\ Description
\\
This track collection shows data from \
Single-nucleus cross-tissue molecular reference maps toward\
understanding disease gene function. The dataset covers ~200,000 single nuclei\
from a total of 16 human donors across 25 samples, using 4 different sample preparation\
protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\
frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\
Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\
and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\
and some shared across all tissue types.\
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\
\ \\ Please see the\ GTEx portal\ for further interactive displays and additional data.
\ \Display Conventions and Configuration
\\ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\
\
| Color | \Cell Type | \
|---|---|
| Endothelial | |
| Epithelial | |
| Glia | |
| Immune | |
| Neuron | |
| Stromal | |
| Other |
\ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\
| Color | \Cell Type | \
|---|---|
| Inflammatory Macrophage | |
| Lung Macrophage | |
| Monocyte/Macrophage FCGR3A High | |
| Monocyte/Macrophage FCGR3A Low | |
| Macrophage HLAII High | |
| Macrophage LYVE1 High | |
| Proliferating Macrophage | |
| Dendritic Cell 1 | |
| Dendritic Cell 2 | |
| Mature Dendritic Cell | |
| Langerhans | |
| CD14+ Monocyte | |
| CD16+ Monocyte | |
| LAM-like | |
| Other |
Methods
\\ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\
\ \\ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\
\ \\ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\
\ \UCSC Methods
\\
The gene expression files were downloaded from the\
\
GTEx portal. The UCSC command line utilities matrixClusterColumns,\
matrixToBarChartBed, and bedToBigBed were used to transform\
these into a bar chart format bigBed file that can be visualized.\
The UCSC utilities can be found on\
our download server.\
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the GTEx Consortium for creating and analyzing these data.
\ \References
\\
Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\
Rouhana JM, Waldman J et al.\
\
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\
Science. 2022 May 13;376(6594):eabl4290.\
PMID: 35549429; PMC:
Description
\ \\
\
\
NOTE:
\
While the DECIPHER database is \
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions.\
Because the UCSC Genes mappings for CNVs are based on associations from\ RefSeq and UniProt, they are dependent on any interpretations from those\ sources. Furthermore, because many DECIPHER records refer to multiple gene\ names, or syndromes not tightly mapped to individual genes, the associations\ in this track should be treated with skepticism and any conclusions\ based on them should be carefully scrutinized using independent\ resources.\
\Data Display Agreement Notice
\
The CNV/SNV data are only available for display in the Browser, and not for bulk\
download. Access to bulk data may be obtained directly from DECIPHER\
(https://www.deciphergenomics.org/about/data-sharing) and is subject to a\
Data Access Agreement, in which the user certifies that no attempt to\
identify individual patients will be undertaken. The same restrictions\
apply to the public data displayed at UCSC in the UCSC Genome Browser;\
no one is authorized to attempt to identify patients by any means.\
These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\
\The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\
\\ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\
\ The CNVs and SNVs tracks show genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site.
\ \\ The Population CNVs track shows common copy-number variants (CNVs) and their\ population frequencies, lifted over from the hg19 assembly.
\ \Display Conventions and Configuration
\\ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \
\ \\ For the CNVs track, the entries are colored by the type of variant:\
- \
- red for loss \
- blue for gain \
- grey for amplification \
\ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\
\ \\ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\
- \
- black for likely or definitely pathogenic \
- dark grey for uncertain or unknown \
- light grey for likely or definitely benign \
\ For the Population CNVs track, genomic variants are visually differentiated to facilitate quick and\ clear identification. Variants are colored according to their clinical significance and type:\
\- \
- Red - exclusively deletion site. (deletions) \
- Blue - exclusively duplication site. (duplication) \
- Grey - deletions and duplications site. (del/dup) \
\ The Population CNVs track's mouseover tooltip provides the following information\ about the data:\
\- \
- Position: Specifies the chromosomal range of the CNV. \
- Type of CNV: Indicates if the variation is a loss, gain, or\ deletions/duplications(del/dup). \
- Frequency of CNV: Reflects how often the CNV occurs in the sampled\ population. \
- Number of Observations: The count of times this CNV was observed in the\ dataset. \
- Sample Size of Study: The total number of samples examined. \
Method
\\ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\
\ \ \Contact
\\ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\
\ \Data Access
\\ The DECIPHER data access and documentation can be found at\ DECIPHER Downloads.\
\ \References
\\
Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\
Carter NP.\
\
DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\
Am J Hum Genet. 2009 Apr;84(4):524-33.\
PMID: 19344873; PMC:
Size of Variant: $size
Genotype: $genotype
Variant Class: $variant_class
Inheritance: $inheritance
Pathogenicity: $pathogenicity
Phenotypes: $phenotypes
\ parent decipherContainer\ priority 1\ searchIndex name\ shortLabel DECIPHER CNVs\ tableBrowser off knownCanonToDecipher knownToDecipher decipherRaw\ track decipher\ type bigBed 9 +\ url https://www.deciphergenomics.org/patient/$$\ urlLabel Decipher Patient View:\ visibility pack\ dgvMerged DGV Struct Var bigBed 9 + Database of Genomic Variants: Structural Var Regions (CNV, Inversion, In/del) 0 1 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D varRep 1 bigDataUrl /gbdb/hg38/dgv/dgvMerged.bb\ dataVersion 2020-02-25\ filter._size 1:9734324\ filterByRange._size on\ filterLabel._size Genomic size of variant\ filterValues.varType complex,deletion,duplication,gain,gain+loss,insertion,inversion,loss,mobile element insertion,novel sequence insertion,sequence alteration,tandem duplication\ longLabel Database of Genomic Variants: Structural Var Regions (CNV, Inversion, In/del)\ mouseOver ID: $name
Position: $chrom:${chromStart}-${chromEnd}
Size: $_size
Type: $varType\ parent dgvPlus on\ priority 1\ searchIndex name\ shortLabel DGV Struct Var\ track dgvMerged\ type bigBed 9 +\ cons100wayViewphastcons Element Conservation (phastCons) bed 4 UCSC 100 Vertebrates - 100 vertebrate genomes aligned with MultiZ by the UCSC Browser Group 0 1 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel UCSC 100 Vertebrates - 100 vertebrate genomes aligned with MultiZ by the UCSC Browser Group\ parent cons100way\ shortLabel Element Conservation (phastCons)\ track cons100wayViewphastcons\ view phastcons\ visibility hide\ ENCFF693WYZ_ENCFF672KET_ENCFF355RRY_ENCFF673UYG ENCFF693WYZ_ENCFF672KET_ENCFF355RRY_ENCFF673UYG bigBed 9 + 5 Adrenal gland, female adult (51 years): (1) cCREs 4 1 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF693WYZ_ENCFF672KET_ENCFF355RRY_ENCFF673UYG.bb\ longLabel Adrenal gland, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 3\ shortLabel ENCFF693WYZ_ENCFF672KET_ENCFF355RRY_ENCFF673UYG\ subGroups organ=adrenal_gland view=cCREs_view simpleBiosample=adrenal_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF693WYZ_ENCFF672KET_ENCFF355RRY_ENCFF673UYG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg ENCODE Regulation Integrated Regulation from ENCODE 0 1 0 0 0 127 127 127 0 0 0
Description
\\ These tracks contain information relevant to the regulation of transcription from the\ ENCODE Project.\ \
- \
- The TF rPeak Clusters track shows genomic regions bound by DNA-associated proteins \ involved in transcriptional regulation from ENCODE 4. \
- The Transcription track shows transcription\ levels assayed by sequencing of polyadenylated RNA from a variety of cell types. \
- The Layered H3K4Me1 and Layered H3K27Ac tracks show where modification of histone proteins\ is suggestive of enhancer and, to a lesser extent, other regulatory activity. These histone \ modifications, particularly H3K4Me1, are quite broad. The actual enhancers are typically just a \ small portion of the area marked by these histone modifications. \
- The Layered H3K4Me3 \ track shows a histone mark associated with promoters. \
- The DNase I Hypersensitivity tracks indicate\ where chromatin is hypersensitive to cutting by the DNase enzyme, which has \ been assayed in a large number of cell types. Regulatory regions, in general, tend to be \ DNase-sensitive, and promoters are particularly DNase-sensitive. \
- The Txn Factor ChIP\ tracks show DNA regions where transcription factors, proteins responsible for \ modulating gene transcription, bind as assayed by chromatin immunoprecipitation with antibodies \ specific to the transcription factor followed by sequencing of the precipitated DNA (ChIP-seq). \
\ These tracks complement each other and together can shed much light on regulatory DNA. The histone\ marks are informative at a high level, but they have a resolution of just ~200 bases and do not\ provide much in the way of functional detail. The DNase hypersensitivity assay is higher in\ resolution at the DNA level and can be done on a large number of cell types since it's just \ a single assay. At the functional level, DNase hypersensitivity suggests that a \ region is very likely to be regulatory in nature, but provides little information beyond that.\ The transcription factor ChIP assay has a high resolution at the DNA level and, due to the very\ specific nature of the transcription factors, is often informative with respect to functional\ detail. However, since each transcription factor must be assayed separately, the information is\ only available for a limited number of transcription factors on a limited number of cell lines. \ Though each assay has its strengths and weaknesses, the fact that all of these assays are \ relatively independent of each other gives increased confidence when multiple tracks are \ suggesting a regulatory function for a region.\
\ \\ For additional information, please click on the hyperlinks for the individual tracks above.\ Also note that additional histone marks and transcription information is available in other\ ENCODE tracks. This integrative supertrack just shows a selection of the most informative data of\ most general interest.\
\ \Display Conventions
\\ By default, the transcription and histone mark displays use a transparent overlay method of \ displaying data from a number of cell lines in a single track. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of the transcription and histone mark tracks\ match their versions from their lifted source on the hg19 assembly.
\\ The DNase tracks, which were not lifted from hg19, are colored differently \ to reflect similarity of cell types. There are three DNase tracks starting with a transparent\ overlay DNase Signal Track to allow viewing signals from all 95 cell types in one track.\ The individual signals and the same coloring scheme can also be found in the DNase HS Track\ where processed peaks and hotspots are also called out as gray boxes with the darkness of\ each box reflecting the underlying signal value. Lastly, in the DNase Clusters track all observed\ hypersensitive regions in the different cell lines at the same location were clustered into a single box\ where a number to the left of the box indicates how many cell types showed a hypersensitivity \ region and the darkness of the grey box is proportional to the maximum value seen from one of\ the underlying cell lines. Clicking on these item takes you to a details page where\ additional information displays, such as the list of cell types that combined to form\ the cluster in the DNase Clusters track.\
\ \Data Access
\\ The raw data for ENCODE 3 Regulation tracks can be accessed from \ \ Table Browser or combined with other data-sets through \ Data Integrator. For automated analysis and downloads, the track data files can be downloaded \ from our downloads server or queried\ using the JSON API or the \ Public SQL Individual regions or the whole genome \ annotation can be accessed as text using our utility bigBedToBed. Instructions for downloading \ the utility can be found \ here. That \ utility can also be used to obtain features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/wgEncodeRegDnase/wgEncodeRegDnaseUwA549Hotspot.broadPeak.bb -chrom=chr21 -start=0 -end=100000000 stdout
\\ For sorting transcription factor binding sites by cell type, we recommend you use the following\ download \ file for hg38.\
\ \ \Credits
\\ Specific labs and contributors for these datasets are listed in the Credits section \ of the individual tracks in this super-track. The integrative view presented here was developed by Jim Kent at UCSC.
\ \Data Use Policy
\Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.
\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE\ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.\ regulation 1 canPack On\ group regulation\ longLabel Integrated Regulation from ENCODE\ priority 1\ shortLabel ENCODE Regulation\ superTrack on show\ track wgEncodeReg\ cCREregistry ENCODE4 cCREs bigBed 9 + 5 ENCODE4 Registry of candidate Cis-Regulatory Elements (cCREs) 4 1 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$Description
\\ This track displays the ENCODE Registry of candidate cis-Regulatory Elements (cCREs) \ in the human genome from ENCODE 4. A total of 2,348,854 elements identified and classified by the \ ENCODE Data Analysis Center according to biochemical signatures. Most cCREs are anchored on \ DNase hypersensitive sites further annotated with histone modifications (H3K4me3 and H3K27ac) \ or CTCF binding measured by ChIP-seq experiments. In this latest version of the Registry (V4), \ the representative DNase hypersensitive sites (rDHSs) were supplemented \ with 86,748 representative transcription factor ChIP-seq peaks (TF \ rPeaks)—peaks that represent binding sites for at least five TFs. The Registry of cCREs is \ one of the core components of the integrative level of the ENCODE Encyclopedia of DNA Elements.
\ \Additional exploration of the cCREs and underlying raw ENCODE signal data can be done with the\ Core Collection track. The data is also available on the SCREEN (Search Candidate cis-Regulatory \ Elements) web tool, designed specifically for the Registry, accessible by item mouseovers and linkouts from the \ track details page.
\ \Display Conventions and Configurations
\\ Each cCRE is displayed as a colored box by type, which reflects its putative functional assignment \ based on biochemical signatures and genomic context:
\\
\ Mousing over the data will display the accession ID, the assigned cCRE class type, and the Max-Z scores\ for the various underlying biosignals (DNase, H3K4me3, H3K27ac, CTCF). A track filter is also available\ to selectively show items based on their cCRE class type.
\ \Methods
\\ Candidate cis-regulatory elements (cCREs) were first anchored on nucleosome-sized DNase \ hypersensitive sites (rDHSs) identified from DNase-seq data. These rDHSs were then annotated \ using ChIP-seq data for histone modifications—H3K4me3 and H3K27ac, marking promoters and \ enhancers, respectively—and CTCF, marking insulators. To supplement rDHS-anchored cCRE \ definitions, transcription factor ChIP-seq peaks were incorporated, enabling identification \ of cCREs even in regions of low chromatin accessibility. Although not used for anchoring, \ ATAC-seq data were used to assess chromatin accessibility in biosamples lacking DNase-seq.
\ \\ Classification of cCRE's was performed based on the following criteria:
\- \
- Promoter-like signatures (promoter) \ must fall within 200 bp of a TSS and have high chromatin accessibility and H3K4me3 signals. \
- TSS-proximal enhancer-like signatures (proximal \ enhancer) have high chromatin accessibility and H3K27ac signals and are \ within 2 kb of an annotated TSS. If they are within 200 bp of a TSS, they must \ also have low H3K4me3 signal. \
- TSS-distal enhancer-like signatures \ (distal enhancer) have high chromatin accessibility and H3K27ac signals \ and are farther than 2 kb from an annotated TSS. \
- Chromatin accessibility + \ H3K4me3 (CA-H3K4me3) have high chromatin accessibility and H3K4me3 \ signals but low H3K27ac signals and do not fall within 200 bp of a TSS. \
- Chromatin accessibility + \ CTCF (CA-CTCF)have high chromatin accessibility and CTCF signals \ but low H3K4me3 and H3K27ac signals. \
- Chromatin accessibility + \ transcription factor (CA-TF) have high chromatin accessibility, \ low H3K4me3, H3K27ac, and CTCF signals, and are bound by a transcription factor. \
- Chromatin accessibility \ (CA)have high chromatin accessibility and low H3K4me3, H3K27ac, and \ CTCF signals. \
- Transcription factor \ (TF) have low chromatin accessibility, low H3K4me3, H3K27ac, \ and CTCF signals and are bound by a transcription factor. \
Data Access
\\ The ENCODE accession numbers of the constituent datasets at the ENCODE Portal are available from the cCRE details page.
\\
The data in this track can be interactively explored with the Table Browser or the Data Integrator. The data can be accessed from \
scripts through our a
\
For automated download and analysis, this annotation is stored in a bigBed file \
that can be downloaded from our download server. \
The file for this track is called cCREregistry.bb. Individual regions or the whole genome \
annotation can be obtained using our tool bigBedToBed which can be compiled from the source \
code or downloaded as a precompiled binary for your system. Instructions for downloading \
source code and binaries can be found here. \
The tool can also be used to obtain only features within a given range, e.g.
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/ccre/cCREregistry.bb -chrom=chr21 -start=0 -end=100000000 stdout
Credits
\\ Data were generated by the ENCODE Consortium. The data were further processed for \ visualization through a collaborative effort between the Weng lab and the Moore lab at UMass Chan Medical \ School (funded by NIH grant HG012343). Integration and visualization were developed \ by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School, who were \ part of the ENCODE Data Analysis Center. We thank the ENCODE production labs \ for generating the data.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T,\
Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N, Fu Y et\
al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Class: ${cCRE_class}
DNase Max-Z: ${DNase_maxZ}
H3K4me3 Max-Z: ${H3K4me3_maxZ}
H3K27ac Max-Z: ${H3K27ac_maxZ}
CTCF Max-Z: ${CTCF_maxZ}\ parent cCREs\ priority 1\ shortLabel ENCODE4 cCREs\ track cCREregistry\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN:\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF281BWX ENCSR000AAA + strand bigWig Aortic smooth muscle cell male adult (21 years) and male adult (54 years) + strand total RNA-seq signal 2 1 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/e2893c99-645f-42a6-922c-577266b2f9e4/ENCFF281BWX.bigWig\ color 255,37,41\ longLabel Aortic smooth muscle cell male adult (21 years) and male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAA + strand\ track wgEncodeReg4RnaSeq_ENCFF281BWX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF881HZW ENCSR000AHD Peak bigBed 5 MCF-7 CTCF peaks 4 1 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2016/11/15/0943edbe-e3b9-4ed6-b366-6b92fe5a2418/ENCFF881HZW.bigBed\ labelFields none\ longLabel MCF-7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AHD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF881HZW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF876YLP ENCSR000AKC Peak bigBed 5 GM12878 H3K27ac peak 4 1 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/d9183916-de40-4ead-9c66-1964b7da39b1/ENCFF876YLP.bigBed\ color 181,145,0\ longLabel GM12878 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AKC Peak\ track wgEncodeReg4Epigenetics_ENCFF876YLP\ type bigBed 5\ visibility squish\ epdNewPromoter EPDnew v6 bigBed 8 Promoters from EPDnew human version 006 0 1 50 50 200 152 152 227 0 0 0 https://epd.epfl.ch/cgi-bin/get_doc?db=hgEpdNew&format=genome&entry=$$
Description
\ \\ These tracks represent the experimentally validated promoters generated by \ the Eukaryotic Promoter Database.\
\ \Display Conventions and Configuration
\ \\ Each item in the track is a representation of the promoter sequence identified by EPD. The\ "thin" part of the element represents the 49 bp upstream of the annotated transcription\ start site (TSS) whereas the "thick" part represents the TSS plus 10 bp downstream. The\ relative position of the thick and thin parts define the orientation of the promoter.
\\ Note that the EPD team has created a public track hub containing\ promoter and supporting annotations for human, mouse, and other vertebrate and model organism\ genomes.
\ \Methods
\\ Briefly, gene transcript coordinates were obtained from multiple sources (HGNC, GENCODE, Ensembl,\ RefSeq) and validated using data from CAGE and RAMPAGE experimental studies obtained from FANTOM 5,\ UCSC, and ENCODE. Peak calling, clustering and filtering based on relative expression were applied\ to identify the most expressed promoters and those present in the largest number of samples.
\\ For the methodology and principles used by EPD to predict TSSs, refer to Dreos et al.\ (2013) in the References section below. A more detailed description of how this data was\ generated can be found at the following links:\ \
- \
- \ Human promoter pipelines: \ coding,\ non-coding\ \
- \ Mouse promoter pipelines:\ coding,\ non-coding\ \
Credits
\ \\ Data was generated by the EPD team at the \ Swiss Institute of Bioinformatics. \ For inquiries, contact the EPD team using this on-line form \ or email \ \ philipp.\ bucher@epfl.\ ch\ \ .\
\ \References
\ \\
Dreos R, Ambrosini G, Perier RC, Bucher P.\
\
EPD and EPDnew, high-quality promoter resources in the\
next-generation sequencing era. Nucleic Acids\
Res. 2013 Jan 1;41(D1):D157-64. PMID:
Description
\ \\ This track shows alignments of fix patch sequences to\ main chromosome sequences in the reference genome assembly.\ When errors are corrected in the reference genome assembly, the\ Genome Reference Consortium\ (GRC) adds fix patch sequences containing the corrected regions.\ This strikes a balance between providing the most complete and correct genome\ sequence, while maintaining stable chromosome coordinates for the original assembly\ sequences.\
\\ Fix patches are often associated with incident reports displayed in the GRC Incidents\ track.\
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ \ PSL alignment tracks.\ Mismatching bases are highlighted in red.\ Several types of alignment gap may also be colored;\ for more information, see\ \ Alignment Insertion/Deletion Display Options.\
\ \Credits
\\ The alignments were provided by NCBI as GFF files and translated into the PSL\ representation for browser display by UCSC.\
\ map 1 baseColorDefault diffBases\ baseColorUseSequence db\ color 231,203,21\ darkerLabels on\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Reference Assembly Fix Patch Sequence Alignments\ parent patchesPsl\ pennantIcon p14 black https://genome-blog.gi.ucsc.edu/blog/patches/ "Includes annotations on GRCh38.p14 patch sequences"\ priority 1\ shortLabel Fix Patches\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track fixSeqLiftOverPsl\ type psl\ visibility pack\ knownGene GENCODE V49 bigGenePred knownGenePep knownGeneMrna GENCODE V49 3 1 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 49, September 2025) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The v49 release was derived from the GTF file that contains annotations only on the main\ chromosomes. Statistics for this build and information on how they were generated can be found on\ the GENCODE site.
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is mostly based on the annotation type:
\- \
- MANE: MANE Select Plus Clinical transcripts.\ For non-MANE transcripts, the following conventions apply.\
- coding: protein coding transcripts, including polymorphic\ pseudogenes\
- non-coding: non-protein coding transcripts\
- pseudogene: pseudogene transcript annotations\
- problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain) \
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \ \Squishy-pack Display
\\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:
\ Protein_coding genes\- \
- MANE or Ensembl canonical\
- \
- 1st: MANE Select / Ensembl canonical \
- 2nd: MANE Plus Clinical \
\
- Coding biotypes\
- \
- 1st: protein_coding and protein_coding_LoF \
- 2nd: NMDs and NSDs \
- 3rd: retained intron and protein_coding_CDS_not_defined \
\
- Completeness\
- \
- 1st: full length \
- 2nd: CDS start/end not found \
\
- CARS score (only for coding transcripts) \
- Transcript genomic span and length (only for non-coding transcripts) \
- \
- Transcript biotype\
- \
- 1st: transcript biotype identical to gene biotype \
\
- Ensembl canonical \
- GENCODE basic \
- Transcript genomic span \
- Transcript length \
Methods
\\
The GENCODE v49 track was built from the GENCODE downloads file \
gencode.v49.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources\
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney. This version of the track was\ generated by Jonathan Casper.
\ \References
\ \\
Mudge JM, Carbonell-Sala S, Diekhans M, Martinez JG, Hunt T, Jungreis I, Loveland JE, Arnan C,\
Barnes I, Bennett R et al.\
\
GENCODE 2025: reference gene annotation for human and mouse.\
Nucleic Acids Res. 2025 Jan 6;53(D1):D966-D975.\
PMID: 39565199; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV49.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ downloadUrl.1 "GFF Format" https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/genes/hg38.knownGene.gtf.gz\ group genes\ hgsid on\ html knownGeneV49\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V49\ maxItems 50000\ priority 1\ searchIndex name\ shortLabel GENCODE V49\ squishyPackField rank\ squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)\ squishyPackPoint 1\ table knownGene\ track knownGene\ type bigGenePred knownGenePep knownGeneMrna\ visibility pack\ pliByGene Gene LoF bigBed 12 + gnomAD Predicted Loss of Function Constraint Metrics By Gene (LOEUF and pLI) v2.1.1 3 1 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/pliByGene.bb\ defaultLabelFields geneName\ filter._pli 0:1\ filterByRange._pli on\ filterLabel._pli Show only items between this pLI range\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Loss of Function Constraint Metrics By Gene (LOEUF and pLI) v2.1.1\ mouseOver LOEUF: $_loeufpLI: $_pli
$synonymous
$pLoF\ parent constraintV2 on\ priority 1\ searchIndex name,geneName\ shortLabel Gene LoF\ subGroups view=v2\ track pliByGene\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1\ urlLabel View this Gene on the gnomAD browser\ geneHancerRegElementsDoubleElite GH Reg Elems (DE) bigBed 9 + Enhancers and promoters from GeneHancer (Double Elite) 1 1 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerRegElementsDoubleElite.hg38.bb\ longLabel Enhancers and promoters from GeneHancer (Double Elite)\ parent ghGeneHancer on\ shortLabel GH Reg Elems (DE)\ subGroups set=a_ELITE view=a_GH\ track geneHancerRegElementsDoubleElite\ wgEncodeRegMarkH3k27acGm12878 GM12878 bigWig 0 223899 H3K27Ac Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 2 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel GM12878\ table wgEncodeBroadHistoneGm12878H3k27acStdSig\ track wgEncodeRegMarkH3k27acGm12878\ type bigWig 0 223899\ wgEncodeBroadHistoneGm12878H3k4me1StdSig GM12878 bigWig 0 5199 H3K4Me1 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel GM12878\ track wgEncodeBroadHistoneGm12878H3k4me1StdSig\ type bigWig 0 5199\ wgEncodeBroadHistoneGm12878H3k4me3StdSig GM12878 bigWig 0 5199 H3K4Me3 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel H3K4Me3 Mark (Often Found Near Regulatory Elements) on GM12878 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel GM12878\ track wgEncodeBroadHistoneGm12878H3k4me3StdSig\ type bigWig 0 5199\ wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled GM12878 bigWig 0 65535 Transcription of GM12878 cells from ENCODE 0 1 255 128 128 255 191 191 0 0 0 regulation 1 color 255,128,128\ longLabel Transcription of GM12878 cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1\ shortLabel GM12878\ track wgEncodeRegTxnCaltechRnaSeqGm12878R2x75Il200SigPooled\ type bigWig 0 65535\ gnomadGenomesVariantsV2 gnomAD Genome v2 vcfTabix Genome Aggregation Database (gnomAD) Genome Variants v2.1 0 1 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/vcf/gnomad.genomes.r2.1.1.sites.liftover_grch38.vcf.gz\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v2.1\ parent gnomadVariantsV2 on\ priority 1\ shortLabel gnomAD Genome v2\ track gnomadGenomesVariantsV2\ gnomadVariantsV4.1 gnomAD v4.1 bigBed 9 + Genome Aggregation Database (gnomAD) Genome and Exome Variants v4.1 4 1 0 0 0 127 127 127 0 0 0
Description
\\ GnomAD 4 used the whole-genome data from gnomAD 3 and added more exomes.\ The current v4.1 release includes a fix for the allele number\ issue.\ The v4.1 track shows variants from 807,162 individuals, including 730,947\ exomes and 76,215 genomes. This includes the 76,156 genomes from the gnomAD v3.1.2 release as well\ as new exome data from 416,555 UK Biobank individuals. For more detailed information on gnomAD\ v4.1, see the related blog post.\
\ \Display Conventions and Configuration
\\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\
| pLoF | |
| Missense | |
| Synonymous | |
| Other |
\ Mouse hover on an item will display the following details about each variant:
\- \
- Position \
- Total Allele Frequency (TotalAF) \
- Genes \
- Annotation \
- FILTER tags from VCF (FILTER) \
- Population with maximum AF (PopMaxAF) \
- Homozygous Individuals \
- Homozygous Individuals in XX samples (chrX and chrY only) \
- Hemizygous Individuals (chrX and chrY only) \
\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\
\ \Label Options
\\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\
\ \Filtering Options
\\ Three filters are available for this track:\
\- \
- FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
- Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP.\
- Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP.\
UCSC Methods
\\ The gnomAD v4.1 data is unfiltered.
\ \\
For the full steps used to create the gnomAD tracks at UCSC, please see the\
Data Access
\\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ The underlying bigBed only contains enough information necessary to use the track in the browser.\ The extra data like VEP annotations and CADD scores are available in the\ same directory\ as the bigBed but in the files details.tab.gz and details.tab.gz.gzi. The\ details.tab.gz contains the gzip compressed extra data in JSON format, and the .gzi file is\ available to speed searching of this data. Each variant has an associated md5sum in the name field\ of the bigBed which can be used along with the _dataOffset and _dataLen fields to get the\ associated external data. For example:
\ \\
# find an item of interest, the last two fields are _dataOffset and _dataLen:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1 12416 12417 854246d79dc5d02dcdbd5f5438542b6e [..omitted..] 67293 902\
\
# use _dataOffset and _dataLen (add one to _dataLen for the newline character):\
bgzip -b 67293 -s 903 gnomad.v4.1.genomes.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e {"DDX11L1": {"cons": ["non_coding_transcript_variant"...\
\
\
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\ varRep 1 compositeTrack on\ configureByPopup off\ dataVersion Release v4.1 (April 19, 2024)\ html gnomadV4.1\ longLabel Genome Aggregation Database (gnomAD) Genome and Exome Variants v4.1\ maxItems 50000\ maxWindowCoverage 200000\ parent gnomadVariants\ priority 1\ shortLabel gnomAD v4.1\ track gnomadVariantsV4.1\ type bigBed 9 +\ visibility squish\ gnomadGenomesVariantsV4_1 gnomAD v4.1 Genomes bigBed 9 + Genome Aggregation Database (gnomAD) Genome Variants v4.1 4 1 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$Description
\\ GnomAD 4 used the whole-genome data from gnomAD 3 and added more exomes.\ The current v4.1 release includes a fix for the allele number\ issue.\ The v4.1 track shows variants from 807,162 individuals, including 730,947\ exomes and 76,215 genomes. This includes the 76,156 genomes from the gnomAD v3.1.2 release as well\ as new exome data from 416,555 UK Biobank individuals. For more detailed information on gnomAD\ v4.1, see the related blog post.\
\ \Display Conventions and Configuration
\\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\
| pLoF | |
| Missense | |
| Synonymous | |
| Other |
\ Mouse hover on an item will display the following details about each variant:
\- \
- Position \
- Total Allele Frequency (TotalAF) \
- Genes \
- Annotation \
- FILTER tags from VCF (FILTER) \
- Population with maximum AF (PopMaxAF) \
- Homozygous Individuals \
- Homozygous Individuals in XX samples (chrX and chrY only) \
- Hemizygous Individuals (chrX and chrY only) \
\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\
\ \Label Options
\\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\
\ \Filtering Options
\\ Three filters are available for this track:\
\- \
- FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
- Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP.\
- Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP.\
UCSC Methods
\\ The gnomAD v4.1 data is unfiltered.
\ \\
For the full steps used to create the gnomAD tracks at UCSC, please see the\
Data Access
\\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ The underlying bigBed only contains enough information necessary to use the track in the browser.\ The extra data like VEP annotations and CADD scores are available in the\ same directory\ as the bigBed but in the files details.tab.gz and details.tab.gz.gzi. The\ details.tab.gz contains the gzip compressed extra data in JSON format, and the .gzi file is\ available to speed searching of this data. Each variant has an associated md5sum in the name field\ of the bigBed which can be used along with the _dataOffset and _dataLen fields to get the\ associated external data. For example:
\ \\
# find an item of interest, the last two fields are _dataOffset and _dataLen:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1 12416 12417 854246d79dc5d02dcdbd5f5438542b6e [..omitted..] 67293 902\
\
# use _dataOffset and _dataLen (add one to _dataLen for the newline character):\
bgzip -b 67293 -s 903 gnomad.v4.1.genomes.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e {"DDX11L1": {"cons": ["non_coding_transcript_variant"...\
\
\
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\ varRep 1 bigDataUrl /gbdb/hg38/gnomAD/v4.1/genomes/genomes.bb\ dataVersion Release v4.1 (April 19, 2024)\ defaultLabelFields _displayName\ detailsDynamicTable _jsonVep|Variant Effect Predictor,_jsonPopTable|Population Frequencies,_jsonHapTable|Haplotype Frequencies\ detailsTabUrls _dataOffset=/gbdb/hg38/gnomAD/v4.1/genomes/gnomad.v4.1.genomes.details.tab.gz\ filter.AF 0.0\ filterLabel.AF Minor Allele Frequency Filter\ filterType.FILTER multipleListAnd\ filterType.variation_type multipleListOr\ filterValues.FILTER PASS,InbreedingCoeff,RF,AC0,AS_VQSR,indel_stack (chrM only),npg (chrM only)\ filterValues.annot pLoF,missense,synonymous,other\ filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,start_retained_variant,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation\ filterValuesDefault.FILTER PASS\ filterValuesDefault.annot pLoF,missense,synonymous\ html gnomadV4.1\ itemRgb on\ labelFields rsId,_displayName\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v4.1\ mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt)TotalAF: ${AF} (${AC}/${AN})
Genes: $genes
Annotation: $annot
FILTER: ${FILTER}
PopMaxAF: ${grpmax}
Homozygous Individuals: ${nhomalt}
Hemizygous Individuals (only in chrX & chrY): ${nhemi}\ parent gnomadVariantsV4.1 on\ priority 1\ searchIndex name,_displayName,rsId\ shortLabel gnomAD v4.1 Genomes\ skipEmptyFields on\ skipFields _displayName\ track gnomadGenomesVariantsV4_1\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$
Splice donor: $donor
Splice acceptor: $acceptor
Intron size: $size bp
Strand: $strand\ parent recount3\ priority 1\ shortLabel GTEx\ showCfg on\ track recount3_gtex\ gtexEqtlCaviar GTEx CAVIAR eQTLs bigBed 12 + GTEx High-Confidence cis-eQTLs from CAVIAR (no chrX) 3 1 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg38/gtex/eQtl/gtexCaviar.bb\ filter.cpp 0\ filterLabel.cpp CPP (Causal Posterior Probability)\ filterLabel.geneName Gene Symbol\ filterLabel.tissue Tissue\ filterText.geneName *\ filterValues.tissue Adipose_Subcutaneous,Adipose_Visceral_Omentum,Adrenal_Gland,Artery_Aorta,Artery_Coronary,Artery_Tibial,Brain_Amygdala,Brain_Anterior_cingulate_cortex_BA24,Brain_Caudate_basal_ganglia,Brain_Cerebellar_Hemisphere,Brain_Cerebellum,Brain_Cortex,Brain_Frontal_Cortex_BA9,Brain_Hippocampus,Brain_Hypothalamus,Brain_Nucleus_accumbens_basal_ganglia,Brain_Putamen_basal_ganglia,Brain_Spinal_cord_cervical_c-1,Brain_Substantia_nigra,Breast_Mammary_Tissue,Cells_Cultured_fibroblasts,Cells_EBV-transformed_lymphocytes,Colon_Sigmoid,Colon_Transverse,Esophagus_Gastroesophageal_Junction,Esophagus_Mucosa,Esophagus_Muscularis,Heart_Atrial_Appendage,Heart_Left_Ventricle,Kidney_Cortex,Liver,Lung,Minor_Salivary_Gland,Muscle_Skeletal,Nerve_Tibial,Ovary,Pancreas,Pituitary,Prostate,Skin_Not_Sun_Exposed_Suprapubic,Skin_Sun_Exposed_Lower_leg,Small_Intestine_Terminal_Ileum,Spleen,Stomach,Testis,Thyroid,Uterus,Vagina,Whole_Blood\ itemRgb on\ longLabel GTEx High-Confidence cis-eQTLs from CAVIAR (no chrX)\ maxItems 100000\ mergeSpannedItems on\ mouseOver $name; CPP: $cpp\ noParentConfig on\ parent gtexEqtlHighConf\ shortLabel GTEx CAVIAR eQTLs\ showCfg on\ track gtexEqtlCaviar\ type bigBed 12 +\ urls eqtlName="https://gtexportal.org/home/snp/$$" geneName="https://gtexportal.org/home/locusBrowserPage/$$" eqtlPos="hgTracks?db=$D&position=$$" genePos="hgTracks?db=$D&position=$$" geneId="https://www.ensembl.org/Homo_sapiens/Gene/Summary?g=$$"\ visibility pack\ gtexGeneV8 GTEx Gene V8 bed 6 + Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019) 3 1 0 0 0 127 127 127 1 0 0
Description
\\ The\ \ NIH Genotype-Tissue Expression (GTEx) project\ was created to establish a sample and data resource for studies on the relationship between \ genetic variation and gene expression in multiple human tissues. \ This track shows median gene expression levels in 52 tissues and 2 cell lines, \ based on RNA-seq data from the GTEx final data release (V8, August 2019).\ This release is based on data from 17,382 tissue samples obtained from 948 adult \ post-mortem individuals.
\ \Display Conventions
\\
In Full and Pack display modes, expression for each gene is represented by a colored bargraph,\
where the height of each bar represents the median expression level across all samples for a \
tissue, and the bar color indicates the tissue.\
Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\
\
The bargraph display has the same width and tissue order for all genes.\
Mouse hover over a bar will show the tissue and median expression level.\
The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\
with highest expression level if it contributes more than 10% to the overall expression\
(and colored black if no tissue predominates).\
In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\
median expression level across all tissues.
\ The GTEx transcript model used to quantify expression level is displayed below the graph,\ colored to indicate the transcript class \ (coding, \ noncoding, \ pseudogene, \ problem), \ following GENCODE conventions.\
\\ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue, along with a link to the corresponding gene page on the GTEx Portal.
\ The track configuration page provides controls to limit the genes and tissues displayed,\ and to select raw or log transformed expression level display.\ \Methods
\ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.\\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 and HiSeq 2500 platforms to produce 76-bp paired end reads with a coverage\ goal of 50M (median achieved was ~82M total reads).\
\ Sequence reads were aligned to the hg38/GRCh38 human genome using STAR v2.5.3a\ assisted by the GENCODE 26 transcriptome definition. \ The alignment pipeline is available\ here.\ \\ Gene annotations were produced using a custom isoform collapsing procedure that excluded\ retained intron and read through transcripts, merged overlapping exon intervals and then excluded\ exon intervals overlapping between genes.\ Gene expression levels in TPM were called via the RNA-SeQC tool (v1.1.9), after filtering for \ unique mapping, proper pairing, and exon overlap.\ For further method details, see the \ \ GTEx Portal Documentation page.
\\ UCSC obtained the gene-level expression files, gene annotations and sample metadata from the \ GTEx Portal Download page.\ Median expression level in TPM was computed per gene/per tissue.
\ \Subject and Sample Characteristics
\\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.
\ \ \Data Access
\\ The raw data for the GTEx Gene expression track can be accessed interactively through the \ \ Table Browser or Data Integrator. Metadata can be \ found in the connected tables below.\
- \
- \ gtexGeneModelV8 describes the gene names and coordinates in genePred format. \
- \ hgFixed.gtexTissueV8 lists each of the 53 tissues in alphabetical order,\ corresponding to the comma separated expression values in gtexGeneV8. \
- \ hgFixed.gtexSampleDataV8 has TPM expression scores for each individual gene-sample \ data point, connected to gtexSampleV8. \
- \ hgFixed.gtexSampleV8 contains metadata about sample time, collection site,\ and tissue, connected to the donor field in the gtexDonorV8 table. \
- \ hgFixed.gtexDonorV8 has anonymized information on the tissue donor.
\
For automated analysis and downloads, the track data files can be downloaded from \
our downloads server\
or the JSON API.\
Individual regions or the whole genome annotation can be accessed as text using our utility\
bigBedToBed. Instructions for downloading the utility can be found \
here. \
That utility can also be used to obtain features within a given range, e.g. \
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gtex/gtexGeneV8.bb -chrom=chr21\
-start=0 -end=100000000 stdout
\ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets
\ \Credits
\\ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.
\ \References
\\ GTEx Consortium. \ \ The GTEx Consortium atlas of genetic regulatory effects across human tissues.\ Science. 2020 Sep 11;369(6509):1318-1330.\ PMID: 32913098; \ PMC: PMC7737656
\ \ \\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069
\ \\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, \ Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181
\ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC:\
DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\
\
RNA-SeQC: RNA-seq metrics for quality control and process optimization.\
Bioinformatics. 2012 Jun 1;28(11):1530-2.\
PMID: 22539670; PMC:
Description
\\ The Human Methylation Atlas tracks display genome-wide DNA methylation profiles from \ deep whole-genome bisulfite sequencing (WGBS) of 39 primary human cell types \ sorted from 205 healthy tissue samples. This comprehensive resource enables fragment-level \ analysis across thousands of unique markers, providing a detailed reference for \ cell-type-specific methylation patterns.\
\ \ Human Methylation Atlas Summary consists of the following subtracks:\- \
- All unmethylated regions track displays a comprehensive catalogue of unmethylated\ \ genomic regions identified independently for each of the 39 cell types in the atlas\ \ using a fragment-level analysis, retaining regions where at least 85% of sequenced DNA\ \ fragments covering four or more CpGs are unmethylated.
- Putative enhancers from unmethylated regions track displays a genome-wide catalogue of\ \ putative transcriptional enhancers derived from regions where at least 85% of sequenced\ \ DNA fragments are unmethylated, and that overlap H3K27ac but not H3K4me3 ChIP-seq peaks,\ \ distinguishing distal enhancer elements from active promoters. This track covers 32 of\ \ the 39 cell types, as H3K27ac ChIP-seq data were unavailable for Adipocytes, Bone\ \ Osteoblasts, Erythrocyte Progenitors, Fallopian Epithelium, Gallbladder, Ovary Epithelium,\ \ and Smooth Muscle.
- Top 250 unmethylated regions specific to each cell type track displays the top 250\ \ genomic regions most specifically unmethylated in each of the 39 cell types, identified\ \ using a one-versus-all comparison approach. Some regions are shared across closely related\ \ cell types (for example, Neuron:Oligodend or Colon-Ep:Gastric-Ep:Small-Int-Ep),\ \ indicating they are unmethylated across those cell types but methylated in all others in\ \ the atlas. \
\
\
\ Unsupervised clustering of these methylomes recapitulates key elements of tissue ontogeny and\ developmental lineage relationships.\
\ \Display Conventions and Configuration
\ \Track Colors
\\ Tracks are colored by tissue/cell type category as follows:\
\ \| Color | Cell Type(s) |
|---|---|
| Neurons | |
| Oligodendrocytes | |
| Thyroid Epithelium | |
| Prostate Epithelium | |
| Bladder Epithelium | |
| Heart Cardiomyocytes | |
| Smooth Muscle | |
| Heart Fibroblasts | |
| Skeletal Muscle | |
| Erythrocyte Progenitors | |
| Blood Granulocytes | |
| Blood Monocytes/Macrophages | |
| Blood T Cells | |
| Blood B Cells | |
| Blood NK Cells | |
| Pancreas Beta Cells | |
| Pancreas Alpha Cells | |
| Pancreas Delta Cells | |
| Pancreas Duct Cells | |
| Pancreas Acinar Cells | |
| Colon Epithelium | |
| Colon Fibroblasts | |
| Small Intestine Epithelium | |
| Gastric Epithelium | |
| Gallbladder | |
| Liver Hepatocytes | |
| Lung Bronchus Epithelium | |
| Lung Alveolar Epithelium | |
| Kidney Epithelium | |
| Endothelial | |
| Breast Basal Epithelium | |
| Breast Luminal Epithelium | |
| Fallopian Epithelium | |
| Ovary Epithelium | |
| Adipocytes | |
| Epidermal Keratinocytes | |
| Dermal Fibroblasts | |
| Bone Osteoblasts | |
| Head Neck Epithelium |
\ Items in these tracks can be filtered by:\
\- \
- Cell/Tissue Type - The cell or tissue type associated with each region.\ Filter values include the 39 cell types for the All Unmethylated Regions track,\ 32 cell types for the Putative Enhancers track, and 39 cell types plus combined\ cell type groups for the Top 250 Unmethylated Regions track. The default is no\ filtering. \
Methods
\ \Sample Collection and Sequencing
\\ Primary human cells were isolated from freshly dissociated adult healthy tissues using \ fluorescence-activated cell sorting (FACS), yielding high-purity preparations across major \ cell lineages. A total of 205 samples representing 77 primary cell types were collected from\ 137 consenting donors and merged into 39 cell type groups based on methylation similarity.\ Average sample purity exceeded 90% as determined by flow cytometry, gene expression, and\ DNA methylation analysis. Some cell types showed lower purity, including colon fibroblasts (78%),\ smooth muscle cells (82%), endothelial cells (86%), and adipocytes (87%).\
\ \\ Several cell types are absent from the atlas, typically due to limited availability of primary\ material. These include osteoblasts, cholangiocytes, cells of the adrenal gland, urethral\ epithelium, and haematopoietic stem cells. Subpopulations of interest, such as distinct neuronal or\ lymphocyte subtypes, were also not resolved separately.\
\ \\ Whole-genome bisulfite sequencing was performed using 150 bp paired-end reads at an average \ sequencing depth of 30× (minimum 6.62×). Libraries were prepared using the \ Accel-NGS Methyl-Seq DNA library preparation kit and sequenced on the Illumina NovaSeq 6000 \ platform.\
\ \Processing and Analysis
\\ Reads were mapped to the human genome (hg38) using bwa-meth, deduplicated with Sambamba, \ and processed into per-CpG methylation calls. The genome was segmented into 7.1 million \ non-overlapping methylation blocks using a multi-channel dynamic programming algorithm \ that identifies regions of homogeneous methylation across samples.\
\ \\ Cell-type-specific differentially methylated regions were identified using a one-versus-all \ comparison approach. Regions uniquely unmethylated in specific cell types were found to be \ enriched for transcriptional enhancers and tissue-specific transcription factor binding motifs.\
\ \\ Data processing was performed using \ wgbstools, an open-source \ computational suite for DNA methylation sequencing data representation, visualization, \ and analysis.\
\ \Data Access
\\ The raw data for these tracks can be explored interactively using the \ Table Browser or the \ Data Integrator. \ For automated analysis, the data may also be queried from our \ REST API.\
\ \\ The complete dataset, including all WGBS data files and processed methylation calls, \ is available from GEO accession \ GSE186458.\
\ \\ For questions regarding the data, please contact \ Prof. Tommy Kaplan at the Hebrew \ University of Jerusalem.\
\ \Credits
\\ Data generation and analysis were performed at the Hebrew University of Jerusalem by the \ Dor, Kaplan, and Glaser laboratories and collaborators. Sample collection involved \ collaboration with Hadassah Medical Center, Oregon Health & Science University, \ Karolinska Institute, and University of Alberta.\
\ \References
\\ Loyfer N, Magenheim J, Peretz A, Cann G, Bredno J, Klochendler A, Fox-Fisher I, \ Shabi-Porat S, Hecht M, Pelet T et al.\ \ A DNA methylation atlas of normal human cell types.\ Nature. 2023 Jan;613(7943):355-364.\ PMID: 36599988\
\ \\ Loyfer N, Rosenski J, Kaplan T.\ \ wgbstools: a computational suite for DNA methylation sequencing data analysis.\ Life Sci Alliance. 2026 Apr;9(4):e202503514.\ PMID: 41611450\
\ \ regulation 1 compositeTrack on\ dataVersion Data release version 2\ html methylationAtlas.html\ longLabel Human Methylation Atlas summary regions and enhancers\ parent dnaMethylation\ priority 1\ shortLabel Human Methylation Atlas Summary\ showCfg on\ track humanMethylationAtlasSummary\ type bigBed 4 .\ visibility pack\ platinumHybrid hybrid vcfTabix Platinum genome hybrid 3 1 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg38/platinumGenomes/hg38.hybrid.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome hybrid\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel hybrid\ showHardyWeinberg on\ track platinumHybrid\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ xGen_Research_Probes_V1 IDT xGen V1 P bigBed IDT - xGen Exome Research Panel V1 Probes 0 1 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-probes-hg38.bb\ color 100,143,255\ longLabel IDT - xGen Exome Research Panel V1 Probes\ parent exomeProbesets off\ shortLabel IDT xGen V1 P\ track xGen_Research_Probes_V1\ type bigBed\ jarvis JARVIS bigWig JARVIS: score to prioritize non-coding regions for disease relevance 1 1 150 130 160 202 192 207 0 0 0Description
\ \\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\
\ \Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\
\ \ The algorithms included in this track are:\- \
- \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
- \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
- \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
- \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ and this score only covers coding regions so gnomAD 2 was more appropriate.\ \
- \ LINSIGHT (hg19 only):\ LINSIGHT is a statistical model for estimating negative selection on\ noncoding sequences in the human genome. The LINSIGHT score measures the\ probability of negative selection on non-coding sites which can be used to\ prioritize SNVs associated with genetic diseases or quantify evolutionary\ constraint on regulatory sequences, e.g., enhancers or promoters. More\ specifically, if a non-coding site is under negative selection, it will be\ less likely to have a substitution or SNV in the human lineage. In\ addition, even if we see a SNV at the site, it will tend to segregate at\ low frequency because of selection. See (Huang et al, Nat Genet 2017).\ \
- \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
Display Conventions and Configuration
\ \JARVIS
\\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.
\ See hg19 makeDoc and\ hg38 makeDoc.\\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.
\ \\
| Percentile | JARVIS score threshold |
|---|---|
| 99th | 0.9998 |
| 95th | 0.9826 |
| 90th | 0.7338 |
HMC
\\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.
\\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\
\ \MetaDome
\ \ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.\\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.
\ \\
| Classification | MetaDome Tolerance Score |
|---|---|
| Highly intolerant | ≤ 0.175 |
| Intolerant | ≤ 0.525 |
| Slightly intolerant | ≤ 0.7 |
MTR
\\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.
\ \Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:
\- \
- Green items MTR percentiles over 75\
- Black items MTR percentiles between 25 and 75\
- Red items MTR percentiles below 25\
- Blue items No MTR score\
\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.
\ \Methods
\ \JARVIS
\\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\
\ \HMC
\\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.
\ \MetaDome
\\
The authors provided a bed file containing codon coordinates along with the scores. \
This file was parsed with a python script to create the two tracks. For the first track\
the scores were aggregated for each coordinate, then the lowest score chosen for any\
overlaps and the result written out to bedGraph format. The file was then converted\
to bigWig with the bedGraphToBigWig utility. For the second track the file\
was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\
utility.
\ See the hg19 makeDoc for details including the build script.
\\ The raw MetaDome data can also be accessed via their Zenodo handle.
\ \MTR
\\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.
\\ See the hg19 makeDoc entry on MTR for more info.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \ \Credits
\ \\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \
\ \ \References
\ \\
Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\
\
Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\
learning.\
Nat Commun. 2021 Mar 8;12(1):1504.\
PMID: 33686085; PMC:
\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\
\ \\
Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\
\
MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\
domains.\
Hum Mutat. 2019 Aug;40(8):1030-1038.\
PMID: 31116477; PMC:
\
Silk M, Petrovski S, Ascher DB.\
\
MTR-Viewer: identifying regions within genes under purifying selection.\
Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\
PMID: 31170280; PMC:
\
Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\
Hardarson MT, Oddsson A, Jensson BO et al.\
\
The sequences of 150,119 genomes in the UK Biobank.\
Nature. 2022 Jul;607(7920):732-740.\
PMID: 35859178; PMC:
\
Huang YF, Gulko B, Siepel A.\
\
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic\
data.\
Nat Genet. 2017 Apr;49(4):618-624.\
PMID: 28288115; PMC:
\
Description
\ This track displays alignments of the tested gene sequences for experiments in\ MaveDB (see the accompanying heatmap track for\ more details). Please note that only a subset of MaveDB experiments could be displayed as\ heatmaps; the sequence alignments in this track only cover those experiments.\\
Display Conventions
\ There are two subtracks - one for alignments of DNA sequences and one for peptide sequences. For convenience,\ the subtracks are set by default to only appear when an alignment appears in the current view window.\\ The DNA subtrack is also configured to highlight base differences from the reference genome. Due to the\ alignment method, this highlighting is currently unavailable for the peptide alignments.\
\
Methods
\ Sequences from MaveDB experiments were aligned using BLAT. DNA sequences went through two processes.\ First they were aligned directly to the genome. Second they were aligned directly to GENCODE transcripts,\ and the resulting alignments were projected onto the genome using pslMap (the former method is more likely\ to capture intronic matches, while the latter does a better job of capturing the expected exon boundaries).\ The two alignment sets were then combined and filtered for overlap with the mapped loci of the corresponding\ heatmaps, and the best alignments were selected for presentation.\\ Two DNA sequences (for 00000002-a-2 and 00000053-a-2) weren't sufficiently identical for this process to\ find a good alignment; in those cases, the sequences were instead aligned using BLAT's translated alignment flags.\
\ Peptide sequences went solely through the GENCODE-pslMap path.\
\
Data Access
\ Direct access to the data files for these experiments can be obtained from\ MaveDB.\\
References
\\
Rubin AF, Stone J, Bianchi AH, Capodanno BJ, Da EY, Dias M, Esposito D, Frazer J, Fu Y, Grindstaff\
SB et al.\
\
MaveDB 2024: a curated community database with over seven million variant effects from multiplexed\
functional assays.\
Genome Biol. 2025 Jan 21;26(1):13.\
PMID: 39838450; PMC:
Description
\\ This tracks contains variants of individual genotypes, usually phased, from the projects\ Human Diversity Genome Project, Simons Genome Diversity Project, gnomad's HGDP+1000 Genomes callset,\ and the Mexico Biobank.\ The original release of 1000 Genomes has its own, separate track.\ Projects where the released variants are not phased can be found in the container track "SNV Frequencies".\
\ \\ Available on hg19 and hg38:
\- \
- \ Mexico Biobank (MXB):\ This track displays phased alleles from the Mexico Biobank Project (MXB), based on array\ genotyping of 6,011 individuals sampled across all 32 states of Mexico during the 2000\ National Health Survey (ENSA 2000) conducted by the National Institute of Public Health\ (INSP). Frequencies can be plotted onto a map on\ MexVar.\ The hg38 track was lifted from hg19.\ \ \
- \ Simons Genome Diversity Project (SGDP):\ Funded by the Simons Foundation, the Simons Genome Diversity Project\ is a large-scale effort that sequenced high-coverage genomes from 300\ individuals (279 in this track) representing 142 diverse and often\ indigenous populations worldwide.\ Its goal was to capture the full range of human genetic\ diversity to better understand population history, migration, and\ adaptation. It is sampling populations in a way that represents as much\ anthropological, linguistic and cultural diversity as possible, and\ thus includes many deeply divergent human populations that are not well\ represented in other datasets. SGDP emphasizes breadth of global representation and\ population history, whereas HGDP emphasizes continuity and\ comparability across major population groups. Not all iits data is\ public, so this track contains only 279 genomes. For details, see\ (Mallick et al, Nature 2016). The hg38 track was lifted from hg19.\ \
\ Available only on hg38:
\- \
- \ Human Genome Diversity Project (HGDP):\ 929 high-coverage genome sequences from 54 diverse human populations,\ 26 of which are physically phased using linked-read sequencing. The\ Human Genome Diversity Project (HGDP) was launched in the early 1990s\ to study the genetic variation and evolutionary history of modern\ humans across global populations. Its goal was to document the full\ spectrum of human genetic diversity, particularly in indigenous and\ geographically isolated groups, to better understand population\ structure, migration, adaptation, and disease susceptibility.The\ project collected samples from ~1,000 individuals representing over 50\ populations worldwide, including groups from Africa, Europe, Asia,\ Oceania, and the Americas. These data have become a foundational\ reference for population genetics and human evolution studies.\ Data can be downloaded from the\ Sanger Website. For details, see (Bergström et al, Science 2020).\ \ \
- \ gnomAD HGDP and 1000 Genomes callset:\ A reprocessed version by the gnomAD project for the 1000 Genomes and\ Human Genome Diversity Project (HGDP) data, with 4094 genomes from 80\ populations. We already have separate, older tracks for 1000 Genomes on the main hg38\ browser and for HGDP, just above. This track combines both datasets, with harmonized data\ quality. For details, see (Koenig et al, 2024).\ \
Display Conventions
\ \\ Full haplotype display:\ In "pack" mode, this track sorts the haplotypes. This can be\ useful for determining the similarity between the samples and inferring\ inheritance at a particular locus.\ Each sample's phased and/or homozygous genotypes are split into haplotypes,\ clustered by similarity around a central variant (in pink), and sorted for\ display by their position in the clustering tree. Click a variant to center on it.\ The tree (as space allows) is drawn in the label area next to the track image.\ Leaf clusters, in which all haplotypes are identical (at least for the variants\ used in clustering), are colored purple. \
\\ For a full description of how the display works, please see our \ Haplotype Display help page.\ \
Data Access
\\ MXB: Allele frequencies by geographical state and ancestry are available via\ the MexVar platform.\ Raw genotype data are available under controlled access at the\ EGA (Study: EGAS00001005797; Dataset: EGAD00010002361). For the VCFs, email\ andres.moreno@cinvestav.mx.\
\ \Methods
\\ SGDP: The version used was\ https://sharehost.hms.harvard.edu/genetics/reich_lab/sgdp/vcf_variants/,\ merged with bcftools and lifted to hg38 with CrossMap. \
\ \Credits
\\ MXB: We thank the Center for Research and Advanced Studies (Cinvestav) of Mexico for\ generating and providing the frequency data, the National Institute of Medical\ Sciences and Nutrition (INCMNSZ) for DNA extraction, and the Ministry of Health\ together with the National Institute of Public Health (INSP) for the design and\ implementation of the National Health Survey 2000 (ENSA 2000). We also thank\ the ENSA-Genomics Consortium for their contributions to sample collection and\ data processing that made possible the construction of the MXB genomic\ resource.\
\\ SGDP: This project was funded by the Simons Foundation. Thanks to David Reich and Swapan \ Mallick for help with importing the data.\
\ \References
\\
Barberena-Jonas C, Medina-Muñoz SG, Cedillo-Castelán V, Sepúlveda-Morales T,\
Gonzaga-Jáuregui C, ENSA Genomics Consortium, García-García L, Ioannidis AG,\
Moreno-Estrada A.\
\
Clinical genetic variation across Hispanic populations in the Mexican Biobank.\
Nat Med. 2026 Jan 21;.\
DOI: 10.1038/s41591-025-04100-z; PMID:
\
Sohail M, Moreno-Estrada A.\
\
The Mexican Biobank Project promotes genetic discovery, inclusive science and local capacity\
building.\
Dis Model Mech. 2024 Jan 1;17(1).\
PMID: 38299665; PMC:
\
Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Corés CD, Barberena-Jonas C, Medina-Muñoz SG,\
Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L et al.\
\
Mexican Biobank advances population and medical genomics of diverse ancestries.\
Nature. 2023 Oct;622(7984):775-783.\
PMID: 37821706; PMC:
\
Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J\
et al.\
\
Insights into human genetic variation and population history from 929 diverse genomes.\
Science. 2020 Mar 20;367(6484).\
PMID: 32193295; PMC:
\
Koenig Z, Yohannes MT, Nkambule LL, Zhao X, Goodrich JK, Kim HA, Wilson MW, Tiao G, Hao SP, Sahakian\
N et al.\
\
A harmonized public resource of deeply sequenced diverse human genomes.\
Genome Res. 2024 Jun 25;34(5):796-809.\
PMID: 38749656; PMC:
\
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S,\
Tandon A et al.\
\
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.\
Nature. 2016 Oct 13;538(7624):201-206.\
PMID: 27654912; PMC:
Description
\\ Massively Parallel Reporter Assays (MPRAs) and related methods such as STARR-seq\ enable quantitative testing of thousands of candidate regulatory DNA sequences in\ parallel by linking each sequence to a reporter gene and measuring transcriptional\ output using sequencing.\
\ \\ The MPRA Base track shows 40,938 experimentally tested cis-regulatory elements\ curated from the MPRA Base\ database\ (Zhao et al., 2023),\ drawn from MPRA, STARR-seq, and related reporter assay experiments.\ The database integrates data from multiple studies, assay platforms (lentiMPRA,\ plasmidMPRA, STARR-seq, CRE-seq, and others), and cell types while preserving\ experiment-level resolution. Only elements derived from genomic fragments that can\ be mapped to the reference genome are included; synthetic or designed oligonucleotide\ libraries without genomic coordinates are excluded.\
\\ The track is a curated union of study-specific libraries rather than a uniform\ genome-wide enhancer catalog: each contributing study targeted a distinct set of\ candidate regions, including HepG2 liver-enhancer panels, melanoma GWAS variants,\ human/mouse pluripotent TSSs, and ASD-associated promoter variants. Each item\ represents one experimental measurement, not a full enhancer; longer regulatory\ elements may be represented by multiple adjacent tiles. Item width corresponds\ to the assayed DNA fragment for tile-based studies (most items, 144–200 bp;\ some Klein et al., 2020 elements 354–678 bp) but collapses to a\ single base for variant-centered studies that mark the SNP location rather than\ the surrounding tested window (Choi et al., 2020).\
\\ Note on cell lines: The cell line shown for each element is the reporter\ cell line in which the genomic fragment was assayed. Most rows test human DNA in\ human cells; the exception is Mattioli et al., 2020, where mESC rows assay the\ mouse orthologous sequence in mouse cells, with hg38 coordinates derived from the\ human ortholog by liftOver.\
\\ The biological context of each cell line is summarized below:\
\| Cell line | Biological context |
|---|---|
| HepG2 | Hepatocellular carcinoma; liver enhancer studies |
| HUES64 | Human embryonic stem cells; pluripotent |
| mESC | Mouse embryonic stem cells; pluripotent |
| NPC | H1-derived neural progenitor cells; developing brain |
| HEK293FT | Embryonic kidney; high-transfection-efficiency reference |
| UACC903 | Melanoma cell line |
Display Conventions
\\ Each item represents a genomic fragment tested within a specific experiment, defined\ as a unique combination of cell line, assay type, and publication (PMID). The same\ genomic region may appear multiple times if tested in different experiments.\
\ \\ Items are colored by percentile rank of the mean raw activity score within each experiment:\
\- \
- Blue — percentile < 50 \
- Orange — percentile 50–74 \
- Red — percentile ≥ 75 \
\ The mouse-over shows the cell line, assay type, raw activity score, percentile rank,\ and citation for each element.\
\ \\ The details page additionally shows the variant allele type for each\ row (reference or alternate for a row that is part of a\ variant comparison, NA for a standard enhancer element that is not a\ variant test) and the tested oligo sequence — the exact DNA\ fragment assayed in the MPRA experiment.\
\ \Interpreting the raw score
\\ For most studies in this track, the raw score is the log2 ratio of reporter\ RNA to input DNA from the source experiment. A score of 0 means the fragment produced\ RNA in proportion to the input plasmid copies (no measurable activity above baseline),\ positive scores indicate the fragment drove the reporter above baseline (enhancer-like\ activity in the assay), and negative scores indicate sub-baseline output (treated as\ inactive, not as validated transcriptional repression). Linear fold change relative to\ baseline is approximately 2raw_score — for example, a raw score of 0.18\ corresponds to roughly 1.13× baseline output, 1.0 to 2×, and 2.0 to 4×.\
\\ Two studies use a different scale: Mattioli et al., 2020 and Koesterich\ et al., 2023 report the MPRAnalyze induced-transcription rate\ (α), which is a positive-only quantity not directly convertible to a fold\ change. As noted in the Methods section, scoring methodology and the threshold\ used to call an element "active" differ between studies, so the percentile rank\ reflects within-experiment ranking only and does not by itself indicate the\ absolute strength of an element.\
\ \Methods
\\ Within each experiment, replicate measurements for the same genomic fragment were\ aggregated by computing the mean raw activity score, yielding 40,938 unique\ experiment-level genomic elements.\
\ \\ Elements are ranked by mean raw activity score independently within each experiment,\ and a percentile rank (0–100) is computed per experiment to avoid cross-study\ distortions caused by differing assay dynamic ranges.\
\ \\ Scoring methodology and the threshold used to call an element "active"\ differ between studies, so percentile-rank comparisons across experiments are\ approximate. Lower scores indicate that the fragment did not measurably activate\ transcription in the assay, rather than that it actively represses transcription.\ For any element of interest, users should consult the source publication for the\ original significance and effect-size calls.\
\ \\ Original genomic coordinates from the source studies (mostly hg19, with some\ mm9 and mm10) were lifted to hg38 by the MPRA Base pipeline using the UCSC\ liftOver tool.\
\ \Experiments
\\ The following table lists the experiments represented in this track.\
\ \| PMID | \Author | \Year | \Lab | \Cell type | \Assay | \Elements | \
|---|---|---|---|---|---|---|
| 27831498 | Inoue et al. | 2017 | Shendure Lab | HepG2 | lentiMPRA | 2,241 |
| 30045748 | Klein et al. | 2018 | Shendure Lab | HepG2 | STARR-seq | 6,728 |
| 32483191 | Choi et al. | 2020 | Brown Lab | HEK293FT | lentiMPRA | 840 |
| 32483191 | Choi et al. | 2020 | Brown Lab | UACC903 | lentiMPRA | 840 |
| 32819422 | Mattioli et al. | 2020 | Mele Lab | HUES64 | plasmidMPRA | 6,954 |
| 32819422 | Mattioli et al. | 2020 | Mele Lab | mESC | plasmidMPRA | 6,954 |
| 33046894 | Klein et al. | 2020 | Shendure Lab | HepG2 | lentiMPRA | 8,116 |
| 33046894 | Klein et al. | 2020 | Shendure Lab | HepG2 | plasmidMPRA | 2,228 |
| 33046894 | Klein et al. | 2020 | Shendure Lab | HepG2 | STARR-seq | 2,230 |
| 36834916 | Koesterich et al. | 2023 | Kreimer Lab | NPC | lentiMPRA | 3,807 |
Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator\ and exported from there to spreadsheet or tab-sep tables.\ From scripts, the data can be accessed through our\ API, track=mprabase.\
\\ For automated download and analysis, the genome annotation is stored in a bigBed\ file that can be downloaded from\ our download server.\ The file for this track is called mprabase.bb. Individual\ regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a\ precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain features within a given range, e.g.\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/mpra/mprabase/mprabase.bb -chrom=chr21 -start=0 -end=100000000 stdout\
\\ The original data can be downloaded from the\ MPRA Base web application.\
\ \Credits
\\ Thanks to Varda Singhal, Jianyu Zhao, and the\ Ahituv Lab\ at the University of California San Francisco for creating and curating MPRA Base and for creating this track.\
\ \References
\ \\
Choi J, Zhang T, Vu A, Ablain J, Makowski MM, Colli LM, Xu M, Hennessey RC, Yin J, Rothschild H\
et al.\
\
Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting\
melanoma.\
Nat Commun. 2020 Jun 1;11(1):2718.\
PMID: 32483191; PMC:
\
Inoue F, Kircher M, Martin B, Cooper GM, Witten DM, McManus MT, Ahituv N, Shendure J.\
\
A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of\
enhancer activity.\
Genome Res. 2017 Jan;27(1):38-52.\
PMID: 27831498; PMC:
\
Klein JC, Keith A, Agarwal V, Durham T, Shendure J.\
\
Functional characterization of enhancer evolution in the primate lineage.\
Genome Biol. 2018 Jul 25;19(1):99.\
PMID: 30045748; PMC:
\
Klein JC, Agarwal V, Inoue F, Keith A, Martin B, Kircher M, Ahituv N, Shendure J.\
\
A systematic evaluation of the design and context dependencies of massively parallel reporter\
assays.\
Nat Methods. 2020 Nov;17(11):1083-1091.\
PMID: 33046894; PMC:
\
Koesterich J, An JY, Inoue F, Sohota A, Ahituv N, Sanders SJ, Kreimer A.\
\
Characterization of De Novo Promoter Variants in Autism Spectrum Disorder with Massively Parallel\
Reporter Assays.\
Int J Mol Sci. 2023 Feb 9;24(4).\
PMID: 36834916; PMC:
\
Mattioli K, Oliveros W, Gerhardinger C, Andergassen D, Maass PG, Rinn JL, Melé M.\
\
Cis and trans effects differentially contribute to the evolution of promoters and enhancers.\
Genome Biol. 2020 Aug 20;21(1):210.\
PMID: 32819422; PMC:
\
Zhao J, Baltoumas FA, Konnaris MA, Mouratidis I, Liu Z, Sims J, Agarwal V, Pavlopoulos GA,\
Georgakopoulos-Soares I, Ahituv N.\
\
MPRAbase: A Massively Parallel Reporter Assay Database.\
bioRxiv. 2023 Nov 22;.\
PMID: 38045264; PMC:
Cell line: $cell_line
Assay: $assay
Raw score: $raw_score
Percentile rank: $percentile_rank
Citation: $citation\ parent mpra on\ priority 1\ shortLabel MPRA Base\ track mprabase\ type bigBed 9 + 11\ urls PMID="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility pack\ hprc90way Multiple Alignment wigMaf 0.0 1.0 Multiple Alignment on 90 human genome assemblies 3 1 0 10 100 0 90 10 0 0 0
Description
\\ This track shows multiple alignments of 90 human genomes generated by the Minigraph-Cactus\ pangenome pipeline, which creates pangenomes directly from whole-genome alignments. This method\ builds graphs containing all forms of genetic variation while allowing use of current mapping and\ genotyping tools.\
\ \Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\ \Methods
\\ The MAF was obtained from the HPRC v1.0 minigraph-cactus HAL file (renamed\ to replace all "." characters in sample names with "#" using\ halRenameGenomes) using cactus v2.6.4 as follows.\
\ cactus-hal2maf ./js ./hprc-v1.0-mc-grch38.h\ al hprc-v1.0-mc-grch38.maf.gz --noAncestors --refGenome GRCh38\ --filterGapCausingDupes --chunkSize 100000 --batchCores 96 --batchCount 1\ 0 --noAncestors --batchParallelTaf 32 --batchSystem slurm --logFile\ hprc-v1.0-mc-grch38.maf.gz.log\ \ zcat hprc-v1.0-mc-grch38.maf.gz | mafDuplicateFilter -m - -k | bgzip >\ hprc-v1.0-mc-grch38-single-copy.maf.gz\ \ \
Credits
\\ Thank you to Glenn Hickey for providing the HAL file from the HPRC project.\
\ \References
\\
Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ et\
al.\
\
A draft human pangenome reference.\
Nature. 2023 May;617(7960):312-324.\
DOI: 10.1038/s41586-023-05896-x; PMID:
\
Hickey G, Monlong J, Ebler J, Novak AM, Eizenga JM, Gao Y, Human Pangenome Reference Consortium,\
Marschall T, Li H, Paten B.\
\
Pangenome graph construction from genome alignments with Minigraph-Cactus.\
Nat Biotechnol. 2023 May 10;.\
DOI: 10.1038/s41587-023-01793-w; PMID:
\
Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\
et al.\
\
Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\
Nature. 2020 Nov;587(7833):246-251.\
DOI: 10.1038/s41586-020-2871-y; PMID:
\
Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\
\
Cactus: Algorithms for genome multiple sequence alignment.\
Genome Res. 2011 Sep;21(9):1512-28.\
DOI: 10.1101/gr.123356.111;\
PMID: 21665927; PMC:
\ OMIM is a compendium of human genes and genetic phenotypes. The full-text, \ referenced overviews in OMIM contain information on all known Mendelian \ disorders and over 12,000 genes. OMIM is authored and edited at the McKusick-Nathans \ Institute of Genetic Medicine, Johns Hopkins University School of Medicine, under \ the direction of Dr. Ada Hamosh. This database was initiated in the early 1960s \ by Dr. Victor A. McKusick as a catalog of Mendelian traits and disorders, \ entitled Mendelian Inheritance in Man (MIM).
\ \\
The OMIM data are separated into three separate tracks:
\
\
OMIM Alellic Variant Phenotypes (OMIM Alleles) - Variants in the OMIM \
database that have associated dbSNP identifiers.
\
\
OMIM Gene Phenotypes (OMIM Genes) - The genomic positions of gene \
entries in the OMIM database. The coloring indicates the associated OMIM phenotype map key.
\
\
OMIM Cytogenetic Loci Phenotypes: Gene Unknown (OMIM Cyto Loci) - Regions \
known to be associated with a phenotype, but for which no specific gene is known \
to be causative. This track also includes known multi-gene syndromes.
\
\
Clicking into the individual tracks provides additional information including display conventions.\
Description
\ \\
\
\
\
NOTE:
\
OMIM is intended for use primarily by physicians and other\
professionals concerned with genetic disorders, by genetics researchers, and\
by advanced students in science and medicine. While the OMIM database is\
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions. Further, please be\
sure to click through to omim.org for the very latest, as they are continually \
updating data.
NOTE ABOUT DOWNLOADS:
\
OMIM is the property \
of Johns Hopkins University and is not available for download or mirroring \
by any third party without their permission. Please see \
OMIM\
for downloads.
OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\
\ \\ The OMIM data are separated into three separate tracks:\
\ \OMIM Alellic Variant Phenotypes (OMIM Alleles)\
Variants in the OMIM database that have associated \
dbSNP identifiers.\
\
OMIM Gene Phenotypes (OMIM Genes)\
The genomic positions of gene entries in the OMIM \
database. The coloring indicates the associated OMIM phenotype map key.\
OMIM Cytogenetic Loci Phenotypes - Gene Unknown (OMIM Cyto Loci)\
Regions known to be associated with a phenotype, \
but for which no specific gene is known to be causative. This track \
also includes known multi-gene syndromes.\
\ \ \
\ This track shows the allelic variants in the Online Mendelian Inheritance in Man\ (OMIM) database that have associated\ dbSNP identifiers.\
\ \Display Conventions and Configuration
\ \Genomic positions of OMIM allelic variants are marked by solid blocks, which appear\ as tick marks when zoomed out. \
The details page for each variant displays the allelic variant description, the amino\ acid replacement, and the associated\ dbSNP and/or\ ClinVar identifiers with links to the\ variant's details at those resources.\
\The descriptions of OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry.\
\ \Methods
\\ This track was constructed as follows: \
- \
- The OMIM allelic variant data file mimAV.txt was obtained from OMIM and\ loaded into the MySQL table omimAv.\
- The genomic position for each allelic variant in omimAv with an associated\ dbSnp identifier was obtained from the snp151 table. The OMIM AV identifiers and\ their corresponding genomic positions from dbSNP were then loaded into the omimAvSnp\ table.\
Data Updates
\ This track is automatically updated once a week from OMIM data. The most recent update time is shown\ at the top of the track documentation page.\ \Data Access
\\ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.
\\ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser 'entitlement'. They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.
\\ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.
\\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.
\ \Credits
\\ Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu,\ Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.
\ \References
\\
Amberger J, Bocchini CA, Scott AF, Hamosh A.\
McKusick's Online Mendelian Inheritance in Man (OMIM).\
Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6.\
PMID: 18842627; PMC:
\
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.\
\
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic\
disorders.\
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\
PMID: 15608251; PMC:
Panel: $panelName
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel\ parent panelApp on\ priority 1\ shortLabel PanelApp GE Genes\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField\ track panelAppGenes\ type bigBed 9 +\ url https://panelapp.genomicsengland.co.uk/panels/$
pHaplo: $pHaplo
Ensembl ID: $ensGene\ parent dosageSensitivity on\ shortLabel pHaploinsufficiency\ showCfg on\ track pHaplo\ type bigBed 9 + 2\ url https://www.deciphergenomics.org/search?q=$$\ urlLabel Link to DECIPHER\ visibility pack\ problematic Problematic Regions bigBed 3 + Problematic/special genomic regions for sequencing or very variable regions 3 1 0 0 0 127 127 127 0 0 0
Description
\ \\ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. The hg19 genome has a track with the same name, but with\ more subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist \ for hg38.\ \
Problematic Regions
\\ The Problematic Regions track contains the following subtracks:\
- \
- \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ The data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\ \ \
- \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \ \ \
- \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\ \
Highly Reproducible Regions (HighRepro)
\\ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\
\- \
- a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8 \
- a HapMap Trio, samples NA10385, NA12248, NA12249 \
- a Genome in a Bottle sample, NA12878s \
GIAB Problematic Regions
\The Genome in a Bottle (GIAB) Problematic Regions tracks provide stratifications of the\ genome to evaluate variant calls in complex regions. It is designed for use with Global Alliance\ for Genomic Health (GA4GH) benchmarking tools like\ hap.py\ and includes regions with low complexity, segmental duplications, functional regions,\ and difficult-to-sequence areas. Developed in collaboration with GA4GH, the\ Genome in a Bottle (GIAB) consortium, and the\ Telomere-to-Telomere Consortium (T2T), the dataset aims to standardize the\ analysis of genetic variation by offering pre-defined BED files for stratifying true and false\ positives in genomic studies, facilitating accurate assessments in complex areas of the genome.
\ \\ The creation of the GIAB Problematic Regions tracks involves using a pipeline and configuration to\ generate stratification BED files that categorize genomic regions based on specific challenges,\ such as low complexity or difficult mapping, to facilitate accurate benchmarking of variant calls.\ For more information on the pipeline and configuration used, please visit the following webpage:\ \ https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/README.md.\ If you have questions or comments, please write to Justin Zook (jzook@nist.gov).
\ \Panmask Easy 151b Regions
\\ The Panmask Easy 151b Regions subtrack contains a set of sample-agnostic easy regions where\ short-read variant calling reaches high accuracy. Easy regions are derived for variant filtration\ agnostic to individual samples. They are genomic intervals where general variant callers achieve\ high accuracy without sophisticated filtering.
\\ A set of easy regions for ancient DNA variant filtering was generated by selecting 35-mers that\ could not be mapped elsewhere within one mismatch or gap. Read alignments from multiple samples\ were inspected to exclude regions with excessively high or low coverage or those enriched with\ low mapping quality alignments. The easy regions generated through this k-mer uniqueness procedure\ are referred to as pm151:lenient, where "pm" stands for panmask. In addition, low\ complexity regions identified by SDUST were removed.
\The pm151 regions are used to filter spurious variant calls in centromeres, long repeats, and\ other genomic regions where short-read mapping is often problematic. They cover 88.2% of hg38,\ 92.2% of coding regions, and 96.3% of ClinVar pathogenic variants. The track can be used to filter\ variant calls for clinical or research human samples. Like the HighRepro track in this container\ (see above), it shows regions that are easy to sequence, not those that are problematic. The data\ was derived from the HPRC assemblies, and this track presents the 151b-easy panmask set.
\ \Display Conventions and Configuration
\ \\ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\
\ \\ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\
\ \Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \
\
For automated download and analysis, the genome annotation is stored in bigBed files that\
can be downloaded from\
our download server.\
Individual\
regions or the whole genome annotation can be obtained using our tool bigBedToBed\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g. \
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout
\
Methods
\ \\ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\
\ \Credits
\\ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\
\ \References
\\
Amemiya HM, Kundaje A, Boyle AP.\
\
The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\
Sci Rep. 2019 Jun 27;9(1):9354.\
PMID: 31249361; PMC:
\
Dwarshuis N, Kalra D, McDaniel J, Sanio P, Alvarez Jerez P, Jadhav B, Huang WE, Mondal R, Busby B,\
Olson ND et al.\
\
The GIAB genomic stratifications resource for human reference genomes.\
Nat Commun. 2024 Oct 19;15(1):9029.\
PMID: 39424793; PMC:
\
Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA,\
Tezak Z, Lababidi S et al.\
\
Best practices for benchmarking germline small-variant calls in human genomes.\
Nat Biotechnol. 2019 May;37(5):555-560.\
PMID: 30858580; PMC:
\
Li H.\
\
Finding easy regions for short-read variant calling from pangenome data.\
ArXiv. 2025 Aug 8;.\
PMID: 40799803; PMC:
\
Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\
al.\
\
Assessing reproducibility of inherited variants detected with short-read whole genome\
sequencing.\
Genome Biol. 2022 Jan 3;23(1):2.\
PMID: 34980216; PMC:
Description
\\ These tracks contain pseudogene predictions and their parents as identified by PseudoPipe.\ PseudoPipe is a homology-based\ computational pipeline that can search a mammalian genome and identify pseudogene sequences\ comprehensively and consistently.\
\\ Pseudogenes are genomic sequences that bear similarity to specific protein-coding genes, but are\ unable to produce functional proteins due to the existence of frameshifts, premature stop codons, or\ other deleterious mutations. They arise from gene duplication or retrotransposition events and are\ important resources in understanding the evolutionary history of genes and genomes.
\ \Display Conventions
\ \This composite track consists of two subtracks: the Pseudogenes track and the Pseudogene\ Parents track.
\\ The Pseudogene Parents track displays parent genes and pseudogenes\ labeled with their HUGO\ IDs, which were derived from Ensembl gene IDs provided by the Gerstein lab after dataset creation. It includes indicators for pseudogenes. \ These indicators do not show pseudogene locations directly but instead indicate how many pseudogenes\ are associated with each gene and link to their genomic regions in the Pseudogenes track.
\\ The Pseudogenes track shows pseudogenes labeled with their parent HUGO ID and colored\ according to pseudogene type. The authors assigned PGOHUMG IDs to genes and PGOHUMT IDs to\ transcripts. Note: Not all PseudoPipe IDs could be mapped back to their original Ensembl\ IDs. In these cases, the gene ID is listed as NA.
\ \ Pseudogene types:\- \
- Unspecified pseudogenes include pseudogenic fragments and protein/chromosome homologies\ \ with high sequence similarity but are too decayed to be reliably classified as processed or\ \ duplicated. \
- Processed pseudogenes (retrotransposed pseudogenes) result from the reverse\ \ transcription of mRNA into DNA, which is then inserted into the genome. These pseudogenes\ \ lack introns, often have small flanking direct repeats, and may retain a 3' polyadenine\ \ tail. PseudoPipe distinguishes them from duplicated pseudogenes by a combination of these\ \ features, with the emphasis on the evidence of ancient introns. \
- Unprocessed pseudogenes (duplicated pseudogenes) arise from genomic DNA duplication or\ \ unequal crossing-over. They often retain the original exon-intron structures of the\ \ functional genes, although sometimes incompletely. \
Pseudogene Parents track
\Each parent gene is shown with associated pseudogenes represented as grey blocks. These blocks\ do not reflect actual pseudogene locations but rather indicate the count of pseudogenes linked to\ the gene.\
\- \
- purple - parent gene \
- grey - pseudogene indicators \
\ If a parent gene has four grey blocks beneath it, this indicates the presence of four pseudogenes\ elsewhere in the genome. Hovering over an item displays the gene type, ID (Ensembl transcript ID\ or PseudoPipe transcript ID), and the genome position of the gene or pseudogene, with a link to\ that genomic region.\
\ \Pseudogenes track
\Pseudogenes are colored by type.
\- \
- orange - unspecified pseudogene \
- blue - unprocessed pseudogene \
- olive green - processed pseudogene \
\ Hovering over a pseudogene item shows the pseudogene type, parent HUGO gene symbol, and the Ensembl\ parent transcript ID, which links to the genome position of the parent gene.
\ \Methods
\\ The PseudoPipe pipeline identifies pseudogenes through a series of steps. It first uses BLAST to\ rapidly cross-reference potential parent proteins against the intergenic regions of the genome. The\ resulting raw hits are then processed by removing redundancies, clustering neighboring sequences,\ and aligning each cluster with a unique parent gene. Finally, pseudogenes are classified based on a\ combination of criteria, including homology, intron-exon structure, and the presence of stop codons\ or frameshifts. This method is designed to detect pseudogenes that are unable to be translated into\ proteins.
\\ These tracks were generated using a Bash script that processes a GTF file with pseudogene\ annotations by removing duplicates, correcting overlapping exons, and converting the data to BED\ format with pseudoPipeToBed.py. This script extracts gene and transcript IDs, merges overlapping\ exons, assigns colors based on pseudogene type, and outputs a BED file with gene and parent\ annotations. PseudoPipeParents.py then links pseudogenes to their functional genes by determining\ parent gene coordinates, updating pseudogene entries with interactive browser links and generating a\ parent BED file. The final data are formatted into pseudoPipePgenes.bb and pseudoPipeParents.bb BigBed\ files. The detailed documentation (makeDoc) and \ Python scripts are available in our GitHub repository.\
\ \Data Access
\The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ The data may also be explored interactively using our\ REST API.
\For automated download and analysis, the genome annotation is stored at UCSC in bigBed files\ that can be downloaded from the\ download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system.
\\ Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/hg38/pseudogenes/pseudoPipePgenes.bb -chrom=chr21 -start=0 -end=10000000 stdout\ \ \Credits
\Thanks to the Gerstein lab at Yale University for making this data available, and to Cristina\ Sisu for providing data in GTF format with parent annotations.
\ \References
\\ Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M.\ \ PseudoPipe: an automated pseudogene identification pipeline.\ Bioinformatics. 2006 Jun 15;22(12):1437-9.\ PMID: 16574694\
\ genes 1 bigDataUrl /gbdb/hg38/pseudogenes/pseudoPipeParents.bb\ html pseudogenes.html\ itemRgb on\ labelFields hugo\ labelSeparator " "\ longLabel Yale Pseudogene Parents\ mouseOver Gene type: ${geneType}ID: ${name}
Pseudogene position: ${url}\ parent pseudogenes\ priority 1\ searchIndex hugo,name\ searchTrix /gbdb/hg38/pseudogenes/pseudoPipeParents.ix\ shortLabel Pseudogene Parents\ skipEmptyFields on\ track yale_parents\ type bigBed 9 +\ visibility pack\ recombAvg Recomb. deCODE Avg bigWig Recombination rate: deCODE Genetics, average from paternal and maternal (mat for chrX) 2 1 0 130 0 127 192 127 0 0 0
Description
\\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\
\ \This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\
\ \Display Conventions and Configuration
\\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\
\ \\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\
\ \Methods
\\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\
\ \The 1000 Genomes genetic map is based on the
As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\
\ \References
\\
1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\
Hurles ME, McVean GA.\
\
A map of human genome variation from population-scale sequencing.\
Nature. 2010 Oct 28;467(7319):1061-73.\
PMID: 20981092; PMC:
\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\
\ map 0 bigDataUrl /gbdb/hg38/recombRate/recombAvg.bw\ html recombRate2.html\ longLabel Recombination rate: deCODE Genetics, average from paternal and maternal (mat for chrX)\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 1\ shortLabel Recomb. deCODE Avg\ track recombAvg\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeq RefSeq All genePred NCBI RefSeq genes, curated and predicted (NM_*, XM_*, NR_*, XR_*, NP_*, YP_*) 1 1 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, curated and predicted (NM_*, XM_*, NR_*, XR_*, NP_*, YP_*)\ parent refSeqComposite off\ priority 1\ shortLabel RefSeq All\ track ncbiRefSeq\ ReMapDensity ReMap density bigWig ReMap density 0 1 0 0 0 127 127 127 0 0 0Description
\\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \
\ \\ Below is a schematic diagram of the types of regulatory regions: \
- \
- ReMap 2022 Atlas (all peaks for each analyzed data set) \
- ReMap 2022 Non-redundant peaks (merged similar target) \
- ReMap 2022 Cis Regulatory Modules \
\
\
Display Conventions and Configuration
\- \
- \ Each transcription factor follows a specific RGB color.\ \
- \ ChIP-seq peak summits are represented by vertical bars.\ \
- \
Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\
GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\
a particular biological condition (e.g. MCF-7).\
Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\ \
- \
Atha: The data set is defined as a ChIP-seq experiment in a given series\
(e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\
condition (i.e. ecotype, tissue type, experimental conditions; e.g.\
Col-0_seedling_3d-6BA-4h).\
Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\ \
Methods
\\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \
\Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \
\ \
\
\
GEO & ArrayExpress
\\
Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\
ArrayExpress (AE) databases. For GEO, the query\
\
'('chip seq' OR 'chipseq' OR\
'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\
sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\
\
was used to return a list of all potential data sets to analyze, which were then manually \
assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\
Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\
were excluded.\
ENCODE
\\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\
- \
- Assay: "ChIP-seq" \
- Organism: "Homo sapiens" \
- Target of assay: "transcription factor" \
- Available data: "fastq" on 2016 June 21st \
ChIP-seq processing
\\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\
\ \ \Quality assessment
\\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\
\\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\
\ \ \ \Data Access
\\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\
\ \References
\ \\
Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\
\
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\
seq experiments.\
Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\
PMID: 29126285; PMC:
\
Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\
F, Ballester B.\
\
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\
DNA-binding sequencing experiments.\
Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\
PMID: 31665499; PMC:
\
Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\
\
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\
landscape.\
Nucleic Acids Res. 2015 Feb 27;43(4):e27.\
PMID: 25477382; PMC:
\
Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\
\
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\
integrative analysis of DNA-binding sequencing experiments.\
Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\
PMID: 34751401; PMC:
Description
\ \\ This track was created by using Arian Smit's\ RepeatMasker\ program, which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences. The program\ outputs a detailed annotation of the repeats that are present in the\ query sequence (represented by this track), as well as a modified version\ of the query sequence in which all the annotated repeats have been masked\ (generally available on the\ Downloads page). RepeatMasker uses the\ Repbase Update library of repeats from the\ Genetic \ Information Research Institute (GIRI).\ Repbase Update is described in Jurka (2000) in the References section below.
\ \This track and the masking information in our \ hg38 genome download FASTA files was created in 2010 with the original RepBase library from 2010-03-02 and RepeatMasker 3.0.1.\ Since April 2019, RepBase is under a commercial license, we cannot distribute\ it or update the track using the RepBase library without a license. Therefore, and for\ compatibility with past results, given how central the masking is for many other\ annotations, we decided to not update the repeatmasking of hg38. However, you can show the\ small differences between the RepeatMasker 3/RepBase from 2010 and RepeatMasker 4/DFAM\ from 2020 using the track "RepeatMasker Viz" in the same track group. It\ contains two subtracks, one with the old and one with the new data. Also, these\ tracks have many more visualization options than the original RepeatMasker\ track.\
\ \However, the last track update time of this track at UCSC is not 2010, because we had to add\ repeatmasking annotations to the rarely used _alt and _fix "patch" sequences of\ the hg38 genome. The repeatmasking annotations of the main chromosomes were unaffected\ and have not changed since 2010.\ For more information on genome patches, see our blog post.\
\ \Display Conventions and Configuration
\ \\ In full display mode, this track displays up to ten different classes of repeats:\
- \
- Short interspersed nuclear elements (SINE), which include ALUs \
- Long interspersed nuclear elements (LINE) \
- Long terminal repeat elements (LTR), which include retroposons \
- DNA repeat elements (DNA) \
- Simple repeats (micro-satellites) \
- Low complexity repeats \
- Satellite repeats \
- RNA repeats (including RNA, tRNA, rRNA, snRNA, scRNA, srpRNA) \
- Other repeats, which includes class RC (Rolling Circle) \
- Unknown \
\ The level of color shading in the graphical display reflects the amount of\ base mismatch, base deletion, and base insertion associated with a repeat\ element. The higher the combined number of these, the lighter the shading.\
\ \\ A "?" at the end of the "Family" or "Class" (for example, DNA?) signifies that\ the curator was unsure of the classification. At some point in the future,\ either the "?" will be removed or the classification will be changed.
\ \Methods
\ \\ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. Repeats are soft-masked. Alignments may\ extend through repeats, but are not permitted to initiate in them.\ See the FAQ for more information.\
\ \Credits
\ \\ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\
\ \References
\ \\ Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0.\ \ https://www.repeatmasker.org/. 1996-2010.\
\ \\ Repbase Update is described in:\
\ \\ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\
\ \\ For a discussion of repeats in mammalian genomes, see:\
\ \\ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\
\ \\ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\
\ rep 0 canPack off\ group rep\ html rmsk\ longLabel Repeating Elements by RepeatMasker\ maxWindowToDraw 10000000\ priority 1\ shortLabel RepeatMasker\ spectrum on\ track rmsk\ type rmsk\ visibility dense\ gnomad31XPercentage Sample % > 1X bigWig gnomAD Percentage of Genome Samples with at least 1X Coverage v3.0.1 2 1 255 0 0 255 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_1.bw\ color 255,0,0\ longLabel gnomAD Percentage of Genome Samples with at least 1X Coverage v3.0.1\ parent gnomad3Coverage off\ priority 1\ shortLabel Sample % > 1X\ track gnomad31XPercentage\ viewLimits 0:1\ gnomad4Exome1XPercentage Sample % > 1X bigWig gnomAD Percentage of Exome Samples with at least 1X Coverage v4.0 2 1 255 0 0 255 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_1.bw\ color 255,0,0\ longLabel gnomAD Percentage of Exome Samples with at least 1X Coverage v4.0\ parent gnomad4ExomeCoverage off\ priority 1\ shortLabel Sample % > 1X\ track gnomad4Exome1XPercentage\ viewLimits 0:1\ miRnaAtlasSample1BarChart Sample 1 bigBarChart miRNA Tissue Atlas microRna Expression 2 1 0 0 0 127 127 127 0 0 0Description
\\ The Human miRNA Tissue Atlas is a\ catalog of tissue-specific microRNA (miRNA) expression across 62 tissues. This track contains\ quantile normalized miRNA expression data sampled from two individuals and mapped to\ miRBase v21 coordinates. The track contains two subtracks, one\ for each individual sampled.
\ \\ The Tissue Specificity Index (TSI) is analogous to the "tau" value for mRNA expression,\ and is calculated as described in the\ \ associated publication. Values closer to 0 indicate miRNAs expressed in many or all tissues,\ while values closer to 1 indicate miRNAs expressed only in a specific tissue or tissues. To\ browse miRNAs by TSI value, please see the\ miRNA Tissue Atlas.
\ \Display Conventions and Configuration
\\ This track is formatted as a barChart track,\ similar to the GTEx or the\ TCGA Cancer Expression tracks, where the\ heights of each bar indicate the expression value for the miRNA in a specific tissue. The tissues\ sampled are described in the table below:\
\| Bar Color | Sample 1 | Sample 2 |
| Adipocyte | Adipocyte | |
| Artery | Artery | |
| Colon | Colon | |
| Dura mater | Dura mater | |
| Kidney | Kidney | |
| Liver | Liver | |
| Lung | Lung | |
| Muscle | Muscle | |
| Myocardium | Myocardium | |
| Skin | Skin | |
| Spleen | Spleen | |
| Stomach | Stomach | |
| Testis | Testis | |
| Thyroid | Thyroid | |
| Small intestine | ||
| Bone | ||
| Gallbladder | ||
| Fascia | ||
| Bladder | ||
| Epididymis | ||
| Tunica albuginea | ||
| Nervus intercostalis | ||
| Arachnoid mater | ||
| Brain | ||
| Small intestine duodenum | ||
| Small intestine jejunum | ||
| Pancreas | ||
| Kidney glandula suprarenalis | ||
| Kidney cortex renalis | ||
| Esophagus | ||
| Prostate | ||
| Bone marrow | ||
| Vein | ||
| Lymph node | ||
| Nerve not specified | ||
| Pleura | ||
| Pituitary gland | ||
| Spinal cord | ||
| Thalamus | ||
| Brain white matter | ||
| Nucleus caudatus | ||
| Kidney medulla renalis | ||
| Brain gray_matter | ||
| Cerebral cortex temporal | ||
| Cerebral cortex frontal | ||
| Cerebral cortex occipital | ||
| Cerebellum |
\ The 14 shared tissues sampled across both individuals are presented in the same order for easier comparison.\
\ \Data Access
\\ The underlying expression matrix and TSI values can be obtained from the\ miRNA tissue atlas website, in the\ data_matrix_quantile.txt and tsi_quantile.csv files.\
\ \References
\\
Ludwig N, Leidinger P, Becker K, Backes C, Fehlmann T, Pallasch C, Rheinheimer S, Meder B,\
Stähler C, Meese E et al.\
\
Distribution of miRNA expression across human tissues.\
Nucleic Acids Res. 2016 May 5;44(8):3865-77.\
PMID: 26921406; PMC:
\ Important: The SpliceAI variant impact data on the UCSC Genome Browser is directly from \ Illumina (See Data Access below). However, since SpliceAI refers to the\ algorithm, and not the computed dataset, the data on the Broad server or other sources may have\ some differences between them.\ \
Description
\\ SpliceAI is an open-source deep\ learning algorithm that predicts splicing probability for nucleotides and \ as a result can score DNA variants for splicing impact.\ Such variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\ SpliceAI was developed at Illumina; a \ lookup tool \ is provided by the Broad institute.\
\ \The spliceAI algorithm is run on the genome sequence itself and scores each\ nucleotide for the probability that it is a donor or acceptor site, on both the\ forward and the reverse strand. Then variants are added and the new sequence is\ scored again. The "wildtype" container track shows the scores for the genome\ sequence itself and the "variants" container track shows the impact of all\ possible variants close to known splice sites. The "wildtype" subtracks are\ useful when looking at new transcript models, to evaluate how likely exon\ boundaries are. The "variants" subtracks are used to evaluate the impact of\ variants onto splicing, typically in medical diagnostics.\
\ \Why are some variants not scored by SpliceAI?
\\ SpliceAI only annotates variants close to splice sites of genes defined by the \ Gencode gene annotation track. Additionally, SpliceAI does not annotate variants if they are\ close to chromosome ends (5kb on either side), deletions of length greater than\ twice the input parameter -D, or inconsistent with the reference fasta file.\
\ \What are the differeneces between masked and unmasked tracks?
\\ The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\ and weakening unannotated splice sites, which are typically much less pathogenic than weakening\ annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\ changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\ splicing analysis and masked tracks for variant interpretation.\
\ \Display Conventions and Interpretation
\\ Variants are colored according to Walker et al. 2023 splicing imact:\
\- \
- Predicted impact on splicing: Score >= 0.2 \
- Not informative: Score < 0.2 and > 0.1 \
- No impact on splicing: Score <= 0.1 \
\ The scores range from 0 to 1 and can be interpreted as the \ probability of the variant being splice-altering. In the paper, a detailed characterization is \ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \Methods
\\
The data were downloaded from Illumina. \
The spliceAI scores are represented in the VCF INFO field as \
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain \
- \
- ALT allele \
- Gene name \
- Acceptor gain score \
- Acceptor loss score \
- Donor gain score \
- Donor loss score \
- Relative location of affected cryptic acceptor \
- Relative location of affected acceptor \
- Relative location of affected cryptic donor \
- Relative location of affected donor \
\ Since most of the values are 0 or almost 0, we selected only those variants \ with a score equal to or greater than 0.02.\
\\ The complete processing of this track can be found in the \ makedoc.\
\ \ \Data Access
\ These data are not available for download from the Genome Browser. \ The raw data can be found directly on\ Illumina. \ See below for a copy of the license restrictions pertaining to these data.\ \ \License
\\ FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are \ made available by Illumina only for academic or not-for-profit research only. \ By accessing the SpliceAI data, you acknowledge and agree that you may only \ use this data for your own personal academic or not-for-profit research only, \ and not for any other purposes. You may not use this data for any for-profit, \ clinical, or other commercial purpose without obtaining a commercial license \ from Illumina, Inc.\
\ \Credits
\\ Thanks to Illumina for making the data available. Thanks to Michael Hiller, Francois Lecoquierre and\ Jean-Madeleine de Sainte Agathe for making available and suggesting the SpliceAI wildtype tracks.\
\ \References
\\ Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\ Arbelaez J, Cui W, Schwartz GB et al.\ \ Predicting Splicing from Primary Sequence with Deep Learning.\ Cell. 2019 Jan 24;176(3):535-548.e24.\ PMID: 30661751\
\ \\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC:
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore\ noScoreFilter on\ parent spliceAI on\ priority 1\ shortLabel SpliceAI SNVs\ tableBrowser off\ track spliceAIsnvs\ type bigBed 9 +\ spliceAI SpliceAI Variants bigBed 9 + SpliceAI: Splice Variant Prediction Score 1 1 0 0 0 127 127 127 0 0 0
\ Important: The SpliceAI variant impact data on the UCSC Genome Browser is directly from \ Illumina (See Data Access below). However, since SpliceAI refers to the\ algorithm, and not the computed dataset, the data on the Broad server or other sources may have\ some differences between them.\ \
Description
\\ SpliceAI is an open-source deep\ learning algorithm that predicts splicing probability for nucleotides and \ as a result can score DNA variants for splicing impact.\ Such variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\ SpliceAI was developed at Illumina; a \ lookup tool \ is provided by the Broad institute.\
\ \The spliceAI algorithm is run on the genome sequence itself and scores each\ nucleotide for the probability that it is a donor or acceptor site, on both the\ forward and the reverse strand. Then variants are added and the new sequence is\ scored again. The "wildtype" container track shows the scores for the genome\ sequence itself and the "variants" container track shows the impact of all\ possible variants close to known splice sites. The "wildtype" subtracks are\ useful when looking at new transcript models, to evaluate how likely exon\ boundaries are. The "variants" subtracks are used to evaluate the impact of\ variants onto splicing, typically in medical diagnostics.\
\ \Why are some variants not scored by SpliceAI?
\\ SpliceAI only annotates variants close to splice sites of genes defined by the \ Gencode gene annotation track. Additionally, SpliceAI does not annotate variants if they are\ close to chromosome ends (5kb on either side), deletions of length greater than\ twice the input parameter -D, or inconsistent with the reference fasta file.\
\ \What are the differeneces between masked and unmasked tracks?
\\ The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\ and weakening unannotated splice sites, which are typically much less pathogenic than weakening\ annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\ changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\ splicing analysis and masked tracks for variant interpretation.\
\ \Display Conventions and Interpretation
\\ Variants are colored according to Walker et al. 2023 splicing imact:\
\- \
- Predicted impact on splicing: Score >= 0.2 \
- Not informative: Score < 0.2 and > 0.1 \
- No impact on splicing: Score <= 0.1 \
\ The scores range from 0 to 1 and can be interpreted as the \ probability of the variant being splice-altering. In the paper, a detailed characterization is \ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \Methods
\\
The data were downloaded from Illumina. \
The spliceAI scores are represented in the VCF INFO field as \
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain \
- \
- ALT allele \
- Gene name \
- Acceptor gain score \
- Acceptor loss score \
- Donor gain score \
- Donor loss score \
- Relative location of affected cryptic acceptor \
- Relative location of affected acceptor \
- Relative location of affected cryptic donor \
- Relative location of affected donor \
\ Since most of the values are 0 or almost 0, we selected only those variants \ with a score equal to or greater than 0.02.\
\\ The complete processing of this track can be found in the \ makedoc.\
\ \ \Data Access
\ These data are not available for download from the Genome Browser. \ The raw data can be found directly on\ Illumina. \ See below for a copy of the license restrictions pertaining to these data.\ \ \License
\\ FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are \ made available by Illumina only for academic or not-for-profit research only. \ By accessing the SpliceAI data, you acknowledge and agree that you may only \ use this data for your own personal academic or not-for-profit research only, \ and not for any other purposes. You may not use this data for any for-profit, \ clinical, or other commercial purpose without obtaining a commercial license \ from Illumina, Inc.\
\ \Credits
\\ Thanks to Illumina for making the data available. Thanks to Michael Hiller, Francois Lecoquierre and\ Jean-Madeleine de Sainte Agathe for making available and suggesting the SpliceAI wildtype tracks.\
\ \References
\\ Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\ Arbelaez J, Cui W, Schwartz GB et al.\ \ Predicting Splicing from Primary Sequence with Deep Learning.\ Cell. 2019 Jan 24;176(3):535-548.e24.\ PMID: 30661751\
\ \\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC:
Protein Name: $protFullNames
UniProt status: $status
\ parent uniprot\ priority 1\ searchIndex name,acc\ shortLabel SwissProt Aln.\ showDiffBasesAllScales on\ skipFields isMain\ track unipAliSwissprot\ type bigPsl\ urls acc="https://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$" refSeqProt="https://www.ncbi.nlm.nih.gov/protein/$$" ncbiGene="https://www.ncbi.nlm.nih.gov/gene/$$" entrezGene="https://www.ncbi.nlm.nih.gov/gene/$$" ensGene="https://www.ensembl.org/Gene/Summary?g=$$"\ visibility pack\ TFrPeakClusters TF rPeak Clusters bigBed 12 + Transcription Factor Representative Peak (rPeak) Clusters (912 factors in 1152 biosamples) from ENCODE 4 0 1 0 0 0 127 127 127 1 0 0
Description
\ \This track displays regulatory regions in the human genome identified using ENCODE \ data, specifically spanning ENCODE phases 2 through 4. It highlights genomic \ regions bound by DNA-associated proteins involved in transcriptional regulation, \ such as RNA polymerase, transcription factors (TFs), and chromatin remodeling \ proteins. Sequence-specific TFs bind directly to short DNA motifs via their \ DNA-binding domains, while other DNA-associated proteins interact with DNA \ indirectly through protein-protein interactions with sequence-specific TFs. Chromatin \ immunoprecipitation followed by sequencing (ChIP-seq) is a high-throughput method \ for mapping genome-wide protein-DNA interactions. Regions of high ChIP signal, \ commonly referred to as ChIP-seq peaks, indicate protein binding sites. For each DNA\ -associated protein, all ENCODE ChIP-seq peaks across biosamples were integrated to generate \ a set of representative peaks (rPeaks). This track displays these rPeaks alongside \ detected DNA motif sites.
\ \Display Conventions and Configuration
\Each rPeak is represented as a gray box, with the shade of gray corresponding \ to the maximum ChIP-seq signal observed across contributing biosamples. The HGNC \ gene name of the associated protein is displayed to the left of the box. If the \ rPeak overlaps a cognate TF motif site in the collection built previously (PMID: \ 37104580 DOI: 10.1126/science.abn7930), \ the motif site is highlighted in green.
\ \Clicking on an rPeak provides detailed information about the biosamples where the \ rPeak was detected, including the count of biosamples with contributing ChIP-seq peaks \ and the total number of biosamples assayed for the protein. Links to relevant ENCODE \ ChIP-seq experiments and overlapping ENCODE candidate cis-regulatory elements (cCREs) \ are also provided.
\ \By default, rPeaks for all 912 DNA-associated proteins with ENCODE ChIP-seq data \ are displayed. Users can customize the display by selecting specific DNA-associated \ proteins in the track settings.
\ \Methods
\ \2,509 ENCODE ChIP-seq experiments were integrated from 912 DNA-associated \ proteins across 1,152 unique biosamples to produce representative peaks (rPeaks) \ for each protein. The processing steps were as follows:
\ \- \
- ChIP-seq peaks for each protein were downloaded from the ENCODE Portal, \ generated using the \ ENCODE Transcription Factor ChIP-seq Processing Pipeline. \
- Using bedtools merge, ChIP-seq peaks were clustered from the protein’s experiments across all biosamples. \
- In each cluster, the peak with the highest ChIP signal (normalized by sequencing depth) was selected as the rPeak. \
- All ChIP-seq peaks overlapping this rPeak by at least one nucleotide were marked as represented and removed from subsequent clustering rounds. \
- Steps 2-4 were repeated until a final list of non-overlapping rPeaks was generated, representing all ChIP-seq peaks for the protein. \
Data Access
\ \The raw data for the ENCODE TF rPeak track will soon be available.
\ \\ The raw data can be explored interactively with the Table Browser,\ for download, intersection or correlations with other tracks. To join this track with others\ based on the chromosome positions, use the Data Integrator.\ \
\ Regarding access to this data track in the Genome Browser, for automated download \ and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called TFrPeakClusters.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g.\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/ENCODE4/TFrPeakClusters.bb -chrom=chr21 -start=0 -end=100000000 stdout
\ \ \For automated access, this track like all others, is also available via our\ API. However, for bulk processing in\ pipelines, downloading the data and/or using bigBed files as described above is\ usually faster.
\ \Credits
\This track was made possible thanks to the efforts of the ENCODE Consortium, \ ENCODE ChIP-seq production laboratories, and the ENCODE Data Coordination Center \ for generating and processing the ChIP-seq datasets. The ENCODE accession numbers \ for the constituent datasets are accessible from the peak details page. Special thanks \ to Drs. Mingshi Gao, Greg Andrews, Jill Moore, and Zhiping Weng at UMass Chan Medical \ School, who were members of the ENCODE Data Analysis Center, for developing this track, \ including providing the rPeak and motif datasets and associated metadata and building the \ track. We also extend our gratitude to Max Haeussler and Jonathan Casper from the UCSC \ Genome Browser Project Team for their assistance in developing this track. For updates \ on the track, please contact the Weng lab.
\ regulation 1 bigDataUrl /gbdb/hg38/bbi/ENCODE4/TFrPeakClusters.bb\ decorator.default.bigDataUrl /gbdb/hg38/bbi/ENCODE4/TFrPeakClustersDecorator.bb\ detailsDynamicTable json_table|experiments support this rPeak\ filterType.factor multipleListOr\ filterValues.factor ADNP,AFF1,AFF4,AGO1,AGO2,AHDC1,AHR,AKAP8,AKNA,ARHGAP35,ARID1B,ARID2,ARID3A,ARID4A,ARID4B,ARID5B,ARNTL,ARNT,AR,ASH1L,ASH2L,ATF1,ATF2,ATF3,ATF4,ATF5,ATF6,ATF7,ATOH8,BACH1,BATF,BCL11A,BCL11B,BCL3,BCL6B,BCL6,BCLAF1,BCOR,BDP1,BHLHE40,BMI1,BNC2,BRCA1,BRCA2,BRD4,BRD9,C11orf30,CAMTA2,CBFA2T2,CBFA2T3,CBFB,CBX1,CBX2,CBX3,CBX5,CBX8,CC2D1A,CCAR2,CCNT2,CDC5L,CEBPA,CEBPB,CEBPD,CEBPG,CEBPZ,CERS6,CGGBP1,CHAMP1,CHD1,CHD2,CHD4,CHD7,CLOCK,CREB1,CREB3L1,CREB3,CREB5,CREM,CSDC2,CSDE1,CSRNP3,CTBP1,CTBP2,CTCFL,CTCF,CUX1,DACH1,DBP,DDIT3,DDX20,DEAF1,DEK,DIDO1,DLX6,DMAP1,DMTF1,DNMT1,DNMT3B,DPF2,DR1,DRAP1,DZIP1,E2F1,E2F2,E2F3,E2F4,E2F5,E2F6,E2F7,E2F8,E4F1,EBF1,EEA1,EED,EGR1,EGR2,EHF,EHMT2,ELF1,ELF2,ELF3,ELF4,ELK1,ELK4,EMX1,EP300,EP400,ERF,ERG,ESR1,ESRRA,ESRRG,ETS1,ETV1,ETV4,ETV5,ETV6,EZH2phosphoT487,EZH2,FEZF1,FIP1L1,FOSB,FOSL1,FOSL2,FOS,FOXA1,FOXA2,FOXA3,FOXC1,FOXF2,FOXJ2,FOXJ3,FOXK1,FOXK2,FOXM1,FOXO1,FOXO4,FOXP1,FOXP2,FOXP4,FOXS1,FUBP1,FUBP3,FUS,GABPA,GABPB1,GATA1,GATA2,GATA3,GATA4,GATAD1,GATAD2A,GATAD2B,GFI1B,GFI1,GLI2,GLI4,GLIS1,GLIS2,GLIS3,GLYR1,GMEB1,GMEB2,GPN1,GTF2A2,GTF2B,GTF2E2,GTF2F1,GTF2I,GTF3A,GTF3C2,GZF1,HBP1,HCFC1,HDAC1,HDAC2,HDAC3,HDAC6,HDAC8,HDGF,HES1,HES2,HES4,HEYL,HHEX,HIC1,HIC2,HINFP,HIVEP1,HLF,HLTF,HMBOX1,HMG20A,HMG20B,HMGA2,HMGN3,HMGXB3,HMGXB4,HNF1A,HNF1B,HNF4A,HNF4G,HNRNPH1,HNRNPK,HNRNPLL,HNRNPL,HNRNPUL1,HOMEZ,HOXA3,HOXA5,HOXA7,HOXB13,HOXB5,HOXD1,HSF1,HSF2,HSF4,ID3,IKZF1,IKZF2,IKZF3,IKZF4,IKZF5,ILF3,INSM2,IRF1,IRF2,IRF3,IRF4,IRF5,IRF9,ISL1,ISL2,ISX,JRK,JUNB,JUND,JUN,KAT2B,KAT7,KAT8,KDM1A,KDM2A,KDM2B,KDM3A,KDM4A,KDM4B,KDM5A,KDM5B,KDM6A,KHSRP,KIAA2018,KLF10,KLF11,KLF12,KLF13,KLF16,KLF17,KLF1,KLF4,KLF5,KLF6,KLF7,KLF8,KLF9,KMT2A,KMT2B,L3MBTL2,LARP7,LBX2,LCORL,LCOR,LEF1,LIN54,MAF1,MAFF,MAFG,MAFK,MAX,MAZ,MBD1,MBD2,MBD4,MED13,MED1,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MGA,MIER1,MIER2,MIER3,MITF,MIXL1,MLLT1,MLXIP,MLX,MNT,MNX1,MSX2,MTA1,MTA2,MTA3,MTF1,MTF2,MXD1,MXD3,MXD4,MXI1,MYBL2,MYB,MYC,MYNN,MYRF,MZF1,NAIF1,NANOG,NBN,NCOA1,NCOA2,NCOA3,NCOA6,NCOR1,NEUROD1,NFAT5,NFATC1,NFATC3,NFATC4,NFE2L1,NFE2L2,NFE2,NFIA,NFIB,NFIC,NFIL3,NFIX,NFKB2,NFKBIZ,NFRKB,NFXL1,NFYA,NFYB,NFYC,NKRF,NKX3-1,NONO,NR0B2,NR1H2,NR2C1,NR2C2,NR2E3,NR2F1,NR2F2,NR2F6,NR3C1,NR4A1,NR5A1,NR5A2,NRF1,NRL,NUFIP1,ONECUT1,ONECUT2,OSR2,OTX2,OVOL1,OVOL3,PAF1,PATZ1,PAWR,PAX5,PAX8,PAXIP1,PBX1,PBX2,PBX3,PCBP1,PCBP2,PHB2,PHB,PHF20,PHF21A,PHF5A,PHF8,PITX1,PKNOX1,PLSCR1,PML,POGZ,POLR2AphosphoS2,POLR2AphosphoS5,POLR2A,POLR2B,POLR2G,POLR2H,POLR3A,POU2F2,POU5F1,POU6F1,PPARG,PRDM10,PRDM15,PRDM1,PRDM4,PRDM6,PRPF4,PRRX2,PTBP1,PTRF,PTTG1,PYGO2,RAD21,RAD51,RARA,RARB,RARG,RB1,RBAK,RBBP5,RBFOX2,RBM14,RBM22,RBM25,RBM39,RBPJ,RCOR1,RCOR2,RELA,RELB,REPIN1,RERE,REST,RFX1,RFX3,RFX5,RFXANK,RFXAP,RLF,RNF219,RNF2,RORA,RREB1,RUNX1,RUNX3,RXRA,RXRB,SAFB2,SAFB,SAP130,SAP30,SATB2,SCRT1,SCRT2,SETDB1,SFPQ,SHOX2,SIN3A,SIN3B,SIRT6,SIX1,SIX4,SIX5,SKIL,SKI,SMAD1,SMAD3,SMAD4,SMAD5,SMAD9,SMARCA4,SMARCA5,SMARCB1,SMARCC1,SMARCC2,SMARCE1,SMC3,SNAI1,SNAI2,SNAPC4,SNIP1,SOX13,SOX18,SOX5,SOX6,SP110,SP140L,SP1,SP2,SP3,SP4,SP5,SP7,SPDEF,SPEN,SPI1,SREBF1,SREBF2,SRF,SRSF1,SRSF3,SRSF4,SSRP1,STAG1,STAT1,STAT3,STAT5A,STAT5B,STAT6,SUPT5H,SUZ12,TAF15,TAF1,TAF7,TAF9B,TAL1,TARDBP,TBL1XR1,TBPL1,TBP,TBX18,TBX21,TBX2,TBX3,TCF12,TCF15,TCF3,TCF4,TCF7L2,TCF7,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP4,TFCP2L1,TFCP2,TFDP1,TFDP2,TFE3,TGIF2,THAP11,THAP12,THAP1,THAP7,THAP8,THAP9,THRAP3,THRA,THRB,TIGD3,TIGD6,TOE1,TOX2,TOX,TP53,TP63,TRAFD1,TRIM22,TRIM24,TRIM25,TRIM28,TSC22D2,TSHZ1,TSHZ2,U2AF1,U2AF2,UBTF,USF1,USF2,VEZF1,WIZ,WRNIP1,WT1,XBP1,XRCC5,YBX1,YEATS2,YEATS4,YY1,YY2,ZBED1,ZBED4,ZBED5,ZBTB10,ZBTB11,ZBTB12,ZBTB14,ZBTB17,ZBTB1,ZBTB20,ZBTB21,ZBTB24,ZBTB25,ZBTB26,ZBTB2,ZBTB33,ZBTB37,ZBTB38,ZBTB39,ZBTB3,ZBTB40,ZBTB42,ZBTB43,ZBTB44,ZBTB46,ZBTB48,ZBTB49,ZBTB4,ZBTB5,ZBTB6,ZBTB7A,ZBTB7B,ZBTB8A,ZBTB9,ZC3H10,ZC3H11A,ZC3H4,ZC3H8,ZCCHC11,ZEB1,ZEB2,ZFHX2,ZFP14,ZFP1,ZFP36L2,ZFP36,ZFP37,ZFP3,ZFP41,ZFP64,ZFP69B,ZFP82,ZFP91,ZFX,ZFY,ZGPAT,ZHX1,ZHX2,ZHX3,ZIC2,ZIK1,ZKSCAN1,ZKSCAN5,ZKSCAN8,ZMAT3,ZMIZ1,ZMYM2,ZMYM3,ZNF101,ZNF10,ZNF121,ZNF124,ZNF12,ZNF133,ZNF134,ZNF138,ZNF140,ZNF142,ZNF143,ZNF146,ZNF148,ZNF157,ZNF165,ZNF16,ZNF175,ZNF17,ZNF180,ZNF184,ZNF189,ZNF18,ZNF197,ZNF202,ZNF205,ZNF207,ZNF20,ZNF215,ZNF217,ZNF219,ZNF221,ZNF223,ZNF224,ZNF225,ZNF230,ZNF232,ZNF234,ZNF239,ZNF24,ZNF251,ZNF256,ZNF257,ZNF25,ZNF263,ZNF264,ZNF266,ZNF26,ZNF274,ZNF276,ZNF280A,ZNF280B,ZNF280D,ZNF281,ZNF282,ZNF296,ZNF2,ZNF30,ZNF311,ZNF316,ZNF317,ZNF318,ZNF319,ZNF324,ZNF329,ZNF331,ZNF333,ZNF335,ZNF337,ZNF33A,ZNF33B,ZNF341,ZNF343,ZNF34,ZNF350,ZNF354B,ZNF354C,ZNF362,ZNF366,ZNF367,ZNF383,ZNF384,ZNF391,ZNF394,ZNF395,ZNF397,ZNF398,ZNF3,ZNF407,ZNF414,ZNF416,ZNF41,ZNF423,ZNF426,ZNF430,ZNF431,ZNF433,ZNF441,ZNF444,ZNF445,ZNF446,ZNF449,ZNF44,ZNF451,ZNF460,ZNF462,ZNF483,ZNF484,ZNF485,ZNF488,ZNF48,ZNF490,ZNF501,ZNF503,ZNF507,ZNF510,ZNF511,ZNF512B,ZNF512,ZNF513,ZNF518A,ZNF526,ZNF529,ZNF530,ZNF532,ZNF543,ZNF547,ZNF548,ZNF549,ZNF550,ZNF552,ZNF555,ZNF556,ZNF557,ZNF558,ZNF561,ZNF569,ZNF570,ZNF572,ZNF574,ZNF576,ZNF579,ZNF580,ZNF583,ZNF584,ZNF585B,ZNF589,ZNF592,ZNF596,ZNF598,ZNF600,ZNF605,ZNF607,ZNF608,ZNF609,ZNF610,ZNF614,ZNF615,ZNF616,ZNF619,ZNF623,ZNF624,ZNF629,ZNF639,ZNF644,ZNF646,ZNF652,ZNF654,ZNF660,ZNF664,ZNF671,ZNF674,ZNF677,ZNF678,ZNF680,ZNF687,ZNF691,ZNF692,ZNF697,ZNF700,ZNF703,ZNF707,ZNF709,ZNF70,ZNF710,ZNF713,ZNF737,ZNF740,ZNF75A,ZNF761,ZNF764,ZNF766,ZNF768,ZNF76,ZNF770,ZNF772,ZNF773,ZNF775,ZNF776,ZNF777,ZNF778,ZNF781,ZNF782,ZNF784,ZNF785,ZNF786,ZNF788,ZNF791,ZNF792,ZNF79,ZNF7,ZNF800,ZNF816,ZNF830,ZNF839,ZNF83,ZNF843,ZNF84,ZNF850,ZNF865,ZNF883,ZNF891,ZNF8,ZSCAN12,ZSCAN16,ZSCAN18,ZSCAN20,ZSCAN21,ZSCAN22,ZSCAN23,ZSCAN29,ZSCAN30,ZSCAN31,ZSCAN32,ZSCAN4,ZSCAN5A,ZSCAN5C,ZSCAN9,ZXDB,ZXDC,ZZZ3\ html TFrPeakClusters.html\ itemRgb on\ labelFields factor\ longLabel Transcription Factor Representative Peak (rPeak) Clusters (912 factors in 1152 biosamples) from ENCODE 4\ mouseOverField factor\ parent wgEncodeReg\ scoreMax 1000\ scoreMin 1\ shortLabel TF rPeak Clusters\ spectrum on\ track TFrPeakClusters\ type bigBed 12 +\ urls exp="https://www.encodeproject.org/experiments/$$/" cCRE="https://screen.wenglab.org/search/?q=$$&assembly=GRCh38" factor="https://www.factorbook.org/tf/human/$$/function"\ visibility hide\ TotalCounts_Fwd Total counts of CAGE reads (fwd) bigWig Total counts of CAGE reads forward 2 1 255 0 0 255 127 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ctssTotalCounts.fwd.bw\ color 255,0,0\ dataVersion FANTOM5 reprocessed7\ longLabel Total counts of CAGE reads forward\ parent Total_counts_multiwig\ shortLabel Total counts of CAGE reads (fwd)\ subGroups category=total strand=forward\ track TotalCounts_Fwd\ type bigWig\ cons100way UCSC 100 Vertebrates bed 4 UCSC 100 Vertebrates - 100 vertebrate genomes aligned with MultiZ by the UCSC Browser Group 2 1 0 0 0 127 127 127 0 0 0\ Downloads for data in this track are available:\
- \
- \ Multiz alignments (MAF format), and phylogenetic trees\
- \ PhyloP conservation (WIG format)\
- \ PhastCons conservation (WIG format)\
Description
\\ This track shows multiple alignments of 100 vertebrate\ species and measurements of evolutionary conservation using\ two methods (phastCons and phyloP) from the\ \ PHAST package, for all species.\ The multiple alignments were generated using multiz and\ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\ PHAST/Multiz are built from chains ("alignable") and nets ("syntenic"), see the documentation of the Chain/Net tracks for a description of the complete\ alignment process.\
\\ PhastCons is a hidden Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\
\\ Another important difference is that phyloP can measure acceleration\ (faster evolution than expected under neutral drift) as well as\ conservation (slower than expected evolution). In the phyloP plots, sites\ predicted to be conserved are assigned positive scores (and shown in blue),\ while sites predicted to be fast-evolving are assigned negative scores (and\ shown in red). The absolute values of the scores represent -log p-values\ under a null hypothesis of neutral evolution. The phastCons scores, by\ contrast, represent probabilities of negative selection and range between 0\ and 1.\
\\ Both phastCons and phyloP treat alignment gaps and unaligned nucleotides as\ missing data, and both were run with the same parameters.\
\\ See also: lastz parameters and other details\ and chain minimum score and gap parameters used in these alignments.\
\ \\ UCSC has repeatmasked and aligned all genome assemblies, and\ provides all the sequences for download. For genome assemblies\ not available in the genome browser, there are alternative assembly hub\ genome browsers. Missing sequence in any assembly\ is highlighted in the track display by regions of yellow when\ zoomed out and by Ns when displayed at base level (see Gap Annotation, below).
\\
\ \\
\ Primate subset \ Organism Species Release date UCSC version Alignment type \ Baboon Papio hamadryas Mar 2012 Baylor Panu_2.0/papAnu2 Reciprocal best net \ Bushbaby Otolemur garnettii Mar 2011 Broad/otoGar3 Syntenic net \ Chimp Pan troglodytes Feb 2011 CSAC 2.1.4/panTro4 Syntenic net \ Crab-eating macaque Macaca fascicularis Jun 2013 Macaca_fascicularis_5.0/macFas5 Syntenic net \ Gibbon Nomascus leucogenys Oct 2012 GGSC Nleu3.0/nomLeu3 Syntenic net \ Gorilla Gorilla gorilla gorilla May 2011 gorGor3.1/gorGor3 Reciprocal best net \ Green monkey Chlorocebus sabaeus Mar 2014 Chlorocebus_sabeus 1.1/chlSab2 Syntenic net \ Human Homo sapiens Dec 2013 GRCh38/hg38 reference species \ Marmoset Callithrix jacchus Mar 2009 WUGSC 3.2/calJac3 Syntenic net \ Orangutan Pongo pygmaeus abelii July 2007 WUGSC 2.0.2/ponAbe2 Reciprocal best net \ Rhesus Macaca mulatta Oct 2010 BGI CR_1.0/rheMac3 Syntenic net \ Squirrel monkey Saimiri boliviensis Oct 2011 Broad/saiBol1 Syntenic net \ Euarchontoglires subset \ Brush-tailed rat Octodon degus Apr 2012 OctDeg1.0/octDeg1 Syntenic net \ Chinchilla Chinchilla lanigera May 2012 ChiLan1.0/chiLan1 Syntenic net \ Chinese hamster Cricetulus griseus Jul 2013 C_griseus_v1.0/criGri1 Syntenic net \ Chinese tree shrew Tupaia chinensis Jan 2013 TupChi_1.0/tupChi1 Syntenic net \ Golden hamster Mesocricetus auratus Mar 2013 MesAur1.0/mesAur1 Syntenic net \ Guinea pig Cavia porcellus Feb 2008 Broad/cavPor3 Syntenic net \ Lesser Egyptian jerboa Jaculus jaculus May 2012 JacJac1.0/jacJac1 Syntenic net \ Mouse Mus musculus Dec 2011 GRCm38/mm10 Syntenic net \ Naked mole-rat Heterocephalus glaber Jan 2012 Broad HetGla_female_1.0/hetGla2 Syntenic net \ Pika Ochotona princeps May 2012 OchPri3.0/ochPri3 Syntenic net \ Prairie vole Microtus ochrogaster Oct 2012 MicOch1.0/micOch1 Syntenic net \ Rabbit Oryctolagus cuniculus Apr 2009 Broad/oryCun2 Syntenic net \ Rat Rattus norvegicus Jul 2014 RGSC 6.0/rn6 Syntenic net \ Squirrel Spermophilus tridecemlineatus Nov 2011 Broad/speTri2 Syntenic net \ Laurasiatheria subset \ Alpaca Vicugna pacos Mar 2013 Vicugna_pacos-2.0.1/vicPac2 Syntenic net \ Bactrian camel Camelus ferus Dec 2011 CB1/camFer1 Syntenic net \ Big brown bat Eptesicus fuscus Jul 2012 EptFus1.0/eptFus1 Syntenic net \ Black flying-fox Pteropus alecto Aug 2012 ASM32557v1/pteAle1 Syntenic net \ Cat Felis catus Nov 2014 ICGSC Felis_catus 8.0/felCat8 Syntenic net \ Cow Bos taurus Jun 2014 Bos_taurus_UMD_3.1.1/bosTau8 Syntenic net \ David's myotis bat Myotis davidii Aug 2012 ASM32734v1/myoDav1 Syntenic net \ Dog Canis lupus familiaris Sep 2011 Broad CanFam3.1/canFam3 Syntenic net \ Dolphin Tursiops truncatus Oct 2011 Baylor Ttru_1.4/turTru2 Reciprocal best net \ Domestic goat Capra hircus May 2012 CHIR_1.0/capHir1 Syntenic net \ Ferret Mustela putorius furo Apr 2011 MusPutFur1.0/musFur1 Syntenic net \ Hedgehog Erinaceus europaeus May 2012 EriEur2.0/eriEur2 Syntenic net \ Horse Equus caballus Sep 2007 Broad/equCab2 Syntenic net \ Killer whale Orcinus orca Jan 2013 Oorc_1.1/orcOrc1 Syntenic net \ Megabat Pteropus vampyrus Jul 2008 Broad/pteVam1 Reciprocal best net \ Little brown bat Myotis lucifugus Jul 2010 Broad Institute Myoluc2.0/myoLuc2 Syntenic net \ Pacific walrus Odobenus rosmarus divergens Jan 2013 Oros_1.0/odoRosDiv1 Syntenic net \ Panda Ailuropoda melanoleuca Dec 2009 BGI-Shenzhen 1.0/ailMel1 Syntenic net \ Pig Sus scrofa Aug 2011 SGSC Sscrofa10.2/susScr3 Syntenic net \ Sheep Ovis aries Aug 2012 ISGC Oar_v3.1/oviAri3 Syntenic net \ Shrew Sorex araneus Aug 2008 Broad/sorAra2 Syntenic net \ Star-nosed mole Condylura cristata Mar 2012 ConCri1.0/conCri1 Syntenic net \ Tibetan antelope Pantholops hodgsonii May 2013 PHO1.0/panHod1 Syntenic net \ Weddell seal Leptonychotes weddellii Mar 2013 LepWed1.0/lepWed1 Reciprocal best net \ White rhinoceros Ceratotherium simum May 2012 CerSimSim1.0/cerSim1 Syntenic net \ Afrotheria subset \ Aardvark Orycteropus afer afer May 2012 OryAfe1.0/oryAfe1 Syntenic net \ Cape elephant shrew Elephantulus edwardii Aug 2012 EleEdw1.0/eleEdw1 Syntenic net \ Cape golden mole Chrysochloris asiatica Aug 2012 ChrAsi1.0/chrAsi1 Syntenic net \ Elephant Loxodonta africana Jul 2009 Broad/loxAfr3 Syntenic net \ Manatee Trichechus manatus latirostris Oct 2011 Broad v1.0/triMan1 Syntenic net \ Tenrec Echinops telfairi Nov 2012 Broad/echTel2 Syntenic net \ Mammal subset \ Armadillo Dasypus novemcinctus Dec 2011 Baylor/dasNov3 Syntenic net \ Opossum Monodelphis domestica Oct 2006 Broad/monDom5 Net \ Platypus Ornithorhynchus anatinus Mar 2007 WUGSC 5.0.1/ornAna1 Reciprocal best net \ Tasmanian devil Sarcophilus harrisii Feb 2011 WTSI Devil_ref v7.0/sarHar1 Net \ Wallaby Macropus eugenii Sep 2009 TWGS Meug_1.1/macEug2 Reciprocal best net \ Aves subset \ Budgerigar Melopsittacus undulatus Sep 2011 WUSTL v6.3/melUnd1 Net \ Chicken Gallus gallus Nov 2011 ICGSC Gallus_gallus-4.0/galGal4 Net \ Collared flycatcher Ficedula albicollis Jun 2013 FicAlb1.5/ficAlb2 Net \ Mallard duck Anas platyrhynchos Apr 2013 BGI_duck_1.0/anaPla1 Net \ Medium ground finch Geospiza fortis Apr 2012 GeoFor_1.0/geoFor1 Net \ Parrot Amazona vittata Jan 2013 AV1/amaVit1 Net \ Peregrine falcon Falco peregrinus Feb 2013 F_peregrinus_v1.0/falPer1 Net \ Rock pigeon Columba livia Feb 2013 Cliv_1.0/colLiv1 Net \ Saker falcon Falco cherrug Feb 2013 F_cherrug_v1.0/falChe1 Net \ Scarlet macaw Ara macao Jun 2013 SMACv1.1/araMac1 Net \ Tibetan ground jay Pseudopodoces humilis Jan 2013 PseHum1.0/pseHum1 Net \ Turkey Meleagris gallopavo Dec 2009 TGC Turkey_2.01/melGal1 Net \ White-throated sparrow Zonotrichia albicollis Apr 2013 ASM38545v1/zonAlb1 Net \ Zebra finch Taeniopygia guttata Feb 2013 WashU taeGut324/taeGut2 Net \ Sarcopterygii subset \ American alligator Alligator mississippiensis Aug 2012 allMis0.2/allMis1 Net \ Chinese softshell turtle Pelodiscus sinensis Oct 2011 PelSin_1.0/pelSin1 Net \ Coelacanth Latimeria chalumnae Aug 2011 Broad/latCha1 Net \ Green seaturtle Chelonia mydas Mar 2013 CheMyd_1.0/cheMyd1 Net \ Lizard Anolis carolinensis May 2010 Broad AnoCar2.0/anoCar2 Net \ Painted turtle Chrysemys picta bellii Mar 2014 v3.0.3/chrPic2 Net \ Spiny softshell turtle Apalone spinifera May 2013 ASM38561v1/apaSpi1 Net \ X. tropicalis Xenopus tropicalis Sep 2012 JGI 7.0/xenTro7 Net \ Fish subset \ Atlantic cod Gadus morhua May 2010 Genofisk GadMor_May2010/gadMor1 Net \ Burton's mouthbreeder Haplochromis burtoni Oct 2011 AstBur1.0/hapBur1 Net \ Fugu Takifugu rubripes Oct 2011 FUGU5/fr3 Net \ Lamprey Petromyzon marinus Sep 2010 WUGSC 7.0/petMar2 Net \ Medaka Oryzias latipes Oct 2005 NIG/UT MEDAKA1/oryLat2 Net \ Mexican tetra (cavefish) Astyanax mexicanus Apr 2013 Astyanax_mexicanus-1.0.2/astMex1 Net \ Nile tilapia Oreochromis niloticus Jan 2011 Broad oreNil1.1/oreNil2 Net \ Princess of Burundi Neolamprologus brichardi May 2011 NeoBri1.0/neoBri1 Net \ Pundamilia nyererei Pundamilia nyererei Oct 2011 PunNye1.0/punNye1 Net \ Southern platyfish Xiphophorus maculatus Jan 2012 Xiphophorus_maculatus-4.4.2/xipMac1 Net \ Spotted gar Lepisosteus oculatus Dec 2011 LepOcu1/lepOcu1 Net \ Stickleback Gasterosteus aculeatus Feb 2006 Broad/gasAcu1 Net \ Tetraodon Tetraodon nigroviridis Mar 2007 Genoscope 8.0/tetNig2 Net \ Yellowbelly pufferfish Takifugu flavidus May 2013 version 1 of Takifugu flavidus genome/takFla1 Net \ Zebra mbuna Maylandia zebra Mar 2012 MetZeb1.1/mayZeb1 Net \ Zebrafish Danio rerio Sep 2014 GRCz10/danRer10 Net
\ Table 1. Genome assemblies included in the 100-way Conservation track.
\
Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ The names of selected species are colored according to their clade,\ alternating between blue and green.\ Note that excluding species from the pairwise display does not alter the\ conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\
- \
- \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
- \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
- \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
- Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\
\ Codon translation uses the following gene tracks as the basis for translation:\ \
\ \\
\ Table 2. Gene tracks used for codon translation.\\ Gene Track Species \ UCSC Genes Human, Mouse \ RefSeq Genes Cow, Frog (X. tropicalis) \ Ensembl Genes v73 Atlantic cod, Bushbaby, Cat, Chicken, Chimp, Coelacanth, Dog, Elephant, Ferret, Fugu, Gorilla, Horse, Lamprey, Little brown bat, Lizard, Mallard duck, Marmoset, Medaka, Megabat, Orangutan, Panda, Pig, Platypus, Rat, Soft-shell Turtle, Southern platyfish, Squirrel, Tasmanian devil, Tetraodon, Zebrafish \ no annotation Aardvark, Alpaca, American alligator, Armadillo, Baboon, Bactrian camel, Big brown bat, Black flying-fox, Brush-tailed rat, Budgerigar, Burton's mouthbreeder, Cape elephant shrew, Cape golden mole, Chinchilla, Chinese hamster, Chinese tree shrew, Collared flycatcher, Crab-eating macaque, David's myotis (bat), Dolphin, Domestic goat, Gibbon, Golden hamster, Green monkey, Green seaturtle, Hedgehog, Killer whale, Lesser Egyptian jerboa, Manatee, Medium ground finch, Mexican tetra (cavefish), Naked mole-rat, Nile tilapia, Pacific walrus, Painted turtle, Parrot, Peregrine falcon, Pika, Prairie vole, Princess of Burundi, Pundamilia nyererei, Rhesus, Rock pigeon, Saker falcon, Scarlet Macaw, Sheep, Shrew, Spiny softshell turtle, Spotted gar, Squirrel monkey, Star-nosed mole, Tawny puffer fish, Tenrec, Tibetan antelope, Tibetan ground jay, Wallaby, Weddell seal, White rhinoceros, White-throated sparrow, Zebra Mbuna, Zebra finch
Methods
\\ Pairwise alignments with the human genome were generated for\ each species using lastz from repeat-masked genomic sequence.\ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\ For more information about the chaining and netting process and\ parameters for each species, see the description pages for the Chain and Net\ tracks.
\\ An additional filtering step was introduced in the generation of the 100-way\ conservation track to reduce the number of paralogs and pseudogenes from the\ high-quality assemblies and the suspect alignments from the low-quality\ assemblies:\ the pairwise alignments of high-quality mammalian\ sequences (placental and marsupial) were filtered based on synteny;\ those for 2X mammalian genomes were filtered to retain only\ alignments of best quality in both the target and query ("reciprocal\ best").
\\ The resulting best-in-genome pairwise alignments\ were progressively aligned using multiz/autoMZ,\ following the tree topology diagrammed above, to produce multiple alignments.\ The multiple alignments were post-processed to\ add annotations indicating alignment gaps, genomic breaks,\ and base quality of the component sequences.\ The annotated multiple alignments, in MAF format, are available for\ bulk download.\ An alignment summary table containing an entry for each\ alignment block in each species was generated to improve\ track display performance at large scales.\ Framing tables were constructed to enable\ visualization of codons in the multiple alignment display.
\ \Phylogenetic Tree Model
\\ Both phastCons and phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all-species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 100-way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene\ set, filtered to select single-coverage long transcripts.\
\\ This same tree model was used in the phyloP calculations; however, the\ background frequencies were modified to maintain reversibility.\ The resulting tree model:\ all species.\
\PhastCons Conservation
\\ The phastCons program computes conservation scores based on a phylo-HMM, a\ type of probabilistic model that describes both the process of DNA\ substitution at each site in a genome and the way this process changes from\ one site to the next (Felsenstein and Churchill 1996, Yang 1995, Siepel and\ Haussler 2005). PhastCons uses a two-state phylo-HMM, with a state for\ conserved regions and a state for non-conserved regions. The value plotted\ at each site is the posterior probability that the corresponding alignment\ column was "generated" by the conserved state of the phylo-HMM. These\ scores reflect the phylogeny (including branch lengths) of the species in\ question, a continuous-time Markov model of the nucleotide substitution\ process, and a tendency for conservation levels to be autocorrelated along\ the genome (i.e., to be similar at adjacent sites). The general reversible\ (REV) substitution model was used. Unlike many conservation-scoring programs,\ phastCons does not rely on a sliding window\ of fixed size; therefore, short highly-conserved regions and long moderately\ conserved regions can both obtain high scores.\ More information about\ phastCons can be found in Siepel et al. 2005.
\\ The phastCons parameters used were: expected-length=45,\ target-coverage=0.3, rho=0.3.
\ \PhyloP Conservation
\\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (\ http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC).\
\Conserved Elements
\\ The conserved elements were predicted by running phastCons with the\ --viterbi option. The predicted elements are segments of the alignment\ that are likely to have been "generated" by the conserved state of the\ phylo-HMM. Each element is assigned a log-odds score equal to its log\ probability under the conserved model minus its log probability under the\ non-conserved model. The "score" field associated with this track contains\ transformed log-odds scores, taking values between 0 and 1000. (The scores\ are transformed using a monotonic function of the form a * log(x) + b.) The\ raw log odds scores are retained in the "name" field and can be seen on the\ details page or in the browser when the track's display mode is set to\ "pack" or "full".\
\ \Credits
\This track was created using the following programs:\
- \
- Alignment tools: lastz (formerly blastz) and multiz by Minmei Hou, Scott Schwartz and Webb\ Miller of the Penn State Bioinformatics Group\
- Chaining and Netting: axtChain, chainNet by Jim Kent at UCSC\
- Conservation scoring: phastCons, phyloP, phyloFit, tree_doctor, msa_view and\ other programs in PHAST by\ Adam Siepel at Cold Spring Harbor Laboratory (original development\ done at the Haussler lab at UCSC).\
- MAF Annotation tools: mafAddIRows by Brian Raney, UCSC; mafAddQRows\ by Richard Burhans, Penn State; genePredToMafFrames by Mark Diekhans, UCSC\
- Tree image generator: phyloPng by Galt Barber, UCSC\
- Conservation track display: Kate Rosenbloom, Hiram Clawson (wiggle\ display), and Brian Raney (gap annotation and codon framing) at UCSC\
The phylogenetic tree is based on Murphy et al. (2001) and general\ consensus in the vertebrate phylogeny community. Thanks to Giacomo Bernardi for\ help with the fish relationships.\
\ \References
\ \Phylo-HMMs, phastCons, and phyloP:
\\ Felsenstein J, Churchill GA.\ A Hidden Markov Model approach to variation among sites in rate of\ evolution. Mol Biol Evol. 1996 Jan;13(1):93-104.\ PMID: 8583911\
\ \\
Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\
\
Detection of nonneutral substitution rates on mammalian phylogenies.\
Genome Res. 2010 Jan;20(1):110-21.\
PMID: 19858363; PMC:
\
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K,\
Clawson H, Spieth J, Hillier LW, Richards S, et al.\
Evolutionarily conserved elements in vertebrate, insect, worm,\
and yeast genomes.\
Genome Res. 2005 Aug;15(8):1034-50.\
PMID: 16024819; PMC:
\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\ DOI: 10.1007/0-387-27733-1_12\
\ \\
Yang Z.\
A space-time process model for the evolution of DNA\
sequences.\
Genetics. 1995 Feb;139(2):993-1005.\
PMID: 7713447; PMC:
Chain/Net:
\\
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\
Evolution's cauldron:\
duplication, deletion, and rearrangement in the mouse and human genomes.\
Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\
PMID: 14500911; PMC:
Multiz:
\\
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM,\
Baertsch R, Rosenbloom K, Clawson H, Green ED, et al.\
Aligning multiple genomic sequences with the threaded blockset aligner.\
Genome Res. 2004 Apr;14(4):708-15.\
PMID: 15060014; PMC:
Lastz (formerly Blastz):
\\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\
\ \\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\
\ \\
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\
Haussler D, Miller W.\
Human-mouse alignments with BLASTZ.\
Genome Res. 2003 Jan;13(1):103-7.\
PMID: 12529312; PMC:
Phylogenetic Tree:
\\ Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E,\ Ryder OA, Stanhope MJ, de Jong WW, Springer MS.\ Resolution of the early placental mammal radiation using Bayesian phylogenetics.\ Science. 2001 Dec 14;294(5550):2348-51.\ PMID: 11743200\
\ compGeno 1 compositeTrack on\ dragAndDrop subTracks\ group compGeno\ longLabel UCSC 100 Vertebrates - 100 vertebrate genomes aligned with MultiZ by the UCSC Browser Group\ priority 1\ shortLabel UCSC 100 Vertebrates\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ track cons100way\ type bed 4\ visibility full\ liftOverHg19 UCSC liftOver to hg19 chain hg19 UCSC liftOver alignments to hg19 0 1 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel UCSC liftOver alignments to hg19\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg19\ parent liftHg19\ priority 1\ shortLabel UCSC liftOver to hg19\ track liftOverHg19\ type chain hg19\ comments UCSC Unusual Regions bigBed 9 + UCSC unusual regions on assembly structure (manually annotated) 3 1 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/comments.bb\ longLabel UCSC unusual regions on assembly structure (manually annotated)\ mouseOverField note\ noScoreFilter on\ parent problematic\ priority 1\ searchIndex name\ searchTrix /gbdb/hg38/problematic/notes.ix\ shortLabel UCSC Unusual Regions\ track comments\ type bigBed 9 +\ umap24 Umap S24 bigBed 6 Single-read mappability with 24-mers 4 1 80 20 240 167 137 247 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb\ color 80,20,240\ longLabel Single-read mappability with 24-mers\ parent umapBigBed on\ priority 1\ shortLabel Umap S24\ subGroups view=SR\ track umap24\ wgEncodeReg4Dnase DNase (Layered) bigWig Chromatin accessibility from DNase-seq signal, averaged by organ/tissue 0 1.1 0 0 0 127 127 127 0 0 0Description
\\ DNase I hypersensitivity identifies regions of open chromatin, which are often associated with\ regulatory elements such as promoters, enhancers, and insulators. This track displays\ genome-wide DNase I hypersensitivity signal, as determined by ENCODE DNase-seq data across all\ phases of the project. Higher signal intensity indicates greater chromatin accessibility,\ suggesting potential regulatory activity. Regulatory elements -- especially promoters -- tend\ to be strongly DNase-sensitive. The data are processed following the\ ENCODE\ DNase-seq pipeline. Additional chromatin accessibility and transcription factor binding\ datasets are available at the\ ENCODE portal.
\ \\ For each organ, this track provides up to two subtracks averaging DNase signal:
\- \
- Tissue and Primary Cell averages only the tissue and primary cell experiments. \
- All Biosamples averages every experiment for that organ, including the\ tissue/primary cell ones plus any from cell lines, in vitro differentiated cells, or\ organoids. \
\ Whether one or two subtracks appear for an organ depends on which kinds of biosamples have\ been assayed:
\- \
- Tissue/primary cell only. There are no cell line, in vitro differentiated cell,\ or organoid experiments to include, so the two averages would be computed from the same\ data and produce identical numbers. Only the Tissue and Primary Cell subtrack\ is shown. \
- Cell line, in vitro differentiated cell, or organoid experiments only.\ There are no tissue or primary cell experiments to average, so only the All Biosamples\ subtrack is shown. In this case it represents those experiments. \
- Both kinds of biosamples available. The two averages give different numbers\ because one covers only the tissue and primary cell experiments while the other includes everything together.\ Both subtracks are shown. \
Available Organs and Tissues
\| Organ/Tissue | \Tissue and Primary Cell Subtrack | \All Biosamples Subtrack | \
|---|---|---|
| adipose | – | ✓ |
| adrenal gland | – | ✓ |
| blood | ✓ | ✓ |
| blood vessel | – | ✓ |
| bone | ✓ | ✓ |
| bone marrow | ✓ | ✓ |
| brain | ✓ | ✓ |
| breast | ✓ | ✓ |
| connective tissue | ✓ | ✓ |
| embryo | ✓ | ✓ |
| epithelium | ✓ | ✓ |
| esophagus | – | ✓ |
| eye | ✓ | ✓ |
| gallbladder | – | ✓ |
| heart | ✓ | ✓ |
| kidney | ✓ | ✓ |
| large intestine | ✓ | ✓ |
| limb | – | ✓ |
| liver | ✓ | ✓ |
| lung | ✓ | ✓ |
| lymphoid tissue | ✓ | – |
| mouth | ✓ | ✓ |
| muscle | ✓ | ✓ |
| nerve | – | ✓ |
| nose | – | ✓ |
| ovary | – | ✓ |
| pancreas | ✓ | ✓ |
| penis | ✓ | ✓ |
| placenta | ✓ | ✓ |
| prostate | ✓ | ✓ |
| skin | ✓ | ✓ |
| small intestine | – | ✓ |
| spinal cord | – | ✓ |
| spleen | – | ✓ |
| stomach | – | ✓ |
| testis | ✓ | ✓ |
| thymus | – | ✓ |
| thyroid | – | ✓ |
| urinary bladder | – | ✓ |
| uterus | ✓ | ✓ |
| vagina | – | ✓ |
Display Conventions and Configuration
\\ By default, this track uses a transparent overlay to visualize data from multiple organs or tissues within\ the same vertical space. For each organ or tissue, signals from all associated experiments were\ averaged to generate the displayed track. Each organ or tissue is assigned a distinct\ color following the\ ENCODE color\ mapping convention,\ selected to be light and saturated to maintain clarity when overlaid. Initially, each layered\ track displays an overlay of five representative organs: blood, brain, kidney, liver, and\ muscle. Clicking on the track opens a details page where you can view and select organs or\ tissues.
\ \ \Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/regulation/organAve/adiposeDNase.bw stdout
Credits
\\ Data were generated by the ENCODE Consortium. We thank the production labs for generating the\ data: Drs. Gregory Crawford (Duke) and John Stamatoyannopoulos (UW). The data were further\ processed for visualization through a collaborative effort between the\ Weng lab and the\ Moore lab\ at UMass Chan Medical School (funded by NIH grant HG012343). Integration and visualization\ were developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\ \This track displays the Human Body Map lincRNAs (large intergenic non\ coding RNAs) and TUCPs (transcripts of uncertain coding potential), as well as their\ expression levels across 22 human tissues and cell lines. The Human Body Map catalog was generated\ by integrating previously existing annotation sources with transcripts that were de-novo assembled\ from RNA-Seq data. These transcripts were collected from ~4 billion RNA-Seq reads across 24 tissues \ and cell types.
\ \Expression abundance was estimated by Cufflinks (Trapnell et al., 2010) based on RNA-Seq. \
Expression abundances were estimated on the gene locus level, rather than for each transcript \
separately and are given as raw FPKM. The prefixes tcons_ and tcons_l2_ are used to describe \
lincRNAs and TUCP transcripts, respectively. Specific details about the catalog generation and data \
sets used for this study can be found in Cabili et al (2011). Extended \
characterization of each transcript in the human body map catalog can be found at the
Expression abundance scores range from 0 to 1000, and are displayed from light blue to dark blue\ respectively:
\ \ \Credits
\ \The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.
\ \References
\ \\
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\
\
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\
specific subclasses.\
Genes Dev. 2011 Sep 15;25(18):1915-27.\
PMID: 21890647; PMC:
\
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\
L.\
\
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\
switching during cell differentiation.\
Nat Biotechnol. 2010 May;28(5):511-5.\
PMID: 20436464; PMC:
\ Important: The SpliceAI variant impact data on the UCSC Genome Browser is directly from \ Illumina (See Data Access below). However, since SpliceAI refers to the\ algorithm, and not the computed dataset, the data on the Broad server or other sources may have\ some differences between them.\ \
Description
\\ SpliceAI is an open-source deep\ learning algorithm that predicts splicing probability for nucleotides and \ as a result can score DNA variants for splicing impact.\ Such variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\ SpliceAI was developed at Illumina; a \ lookup tool \ is provided by the Broad institute.\
\ \The spliceAI algorithm is run on the genome sequence itself and scores each\ nucleotide for the probability that it is a donor or acceptor site, on both the\ forward and the reverse strand. Then variants are added and the new sequence is\ scored again. The "wildtype" container track shows the scores for the genome\ sequence itself and the "variants" container track shows the impact of all\ possible variants close to known splice sites. The "wildtype" subtracks are\ useful when looking at new transcript models, to evaluate how likely exon\ boundaries are. The "variants" subtracks are used to evaluate the impact of\ variants onto splicing, typically in medical diagnostics.\
\ \Why are some variants not scored by SpliceAI?
\\ SpliceAI only annotates variants close to splice sites of genes defined by the \ Gencode gene annotation track. Additionally, SpliceAI does not annotate variants if they are\ close to chromosome ends (5kb on either side), deletions of length greater than\ twice the input parameter -D, or inconsistent with the reference fasta file.\
\ \What are the differeneces between masked and unmasked tracks?
\\ The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\ and weakening unannotated splice sites, which are typically much less pathogenic than weakening\ annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\ changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\ splicing analysis and masked tracks for variant interpretation.\
\ \Display Conventions and Interpretation
\\ Variants are colored according to Walker et al. 2023 splicing imact:\
\- \
- Predicted impact on splicing: Score >= 0.2 \
- Not informative: Score < 0.2 and > 0.1 \
- No impact on splicing: Score <= 0.1 \
\ The scores range from 0 to 1 and can be interpreted as the \ probability of the variant being splice-altering. In the paper, a detailed characterization is \ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \Methods
\\
The data were downloaded from Illumina. \
The spliceAI scores are represented in the VCF INFO field as \
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain \
- \
- ALT allele \
- Gene name \
- Acceptor gain score \
- Acceptor loss score \
- Donor gain score \
- Donor loss score \
- Relative location of affected cryptic acceptor \
- Relative location of affected acceptor \
- Relative location of affected cryptic donor \
- Relative location of affected donor \
\ Since most of the values are 0 or almost 0, we selected only those variants \ with a score equal to or greater than 0.02.\
\\ The complete processing of this track can be found in the \ makedoc.\
\ \ \Data Access
\ These data are not available for download from the Genome Browser. \ The raw data can be found directly on\ Illumina. \ See below for a copy of the license restrictions pertaining to these data.\ \ \License
\\ FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are \ made available by Illumina only for academic or not-for-profit research only. \ By accessing the SpliceAI data, you acknowledge and agree that you may only \ use this data for your own personal academic or not-for-profit research only, \ and not for any other purposes. You may not use this data for any for-profit, \ clinical, or other commercial purpose without obtaining a commercial license \ from Illumina, Inc.\
\ \Credits
\\ Thanks to Illumina for making the data available. Thanks to Michael Hiller, Francois Lecoquierre and\ Jean-Madeleine de Sainte Agathe for making available and suggesting the SpliceAI wildtype tracks.\
\ \References
\\ Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\ Arbelaez J, Cui W, Schwartz GB et al.\ \ Predicting Splicing from Primary Sequence with Deep Learning.\ Cell. 2019 Jan 24;176(3):535-548.e24.\ PMID: 30661751\
\ \\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC:
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore\ noScoreFilter on\ parent spliceAI on\ priority 1.1\ shortLabel SpliceAI indels\ tableBrowser off\ track spliceAIindels\ type bigBed 9 +\ wgEncodeRegTxn Transcription bigWig 0 65500 Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE 0 1.1 0 0 0 127 127 127 0 0 0
Description
\\ This track shows transcription levels for several cell types as assayed by high-throughput\ sequencing of polyadenylated RNA (RNA-seq).\ Additional views of this dataset and additional documentation on the methods used\ for this track are available at the\ ENCODE Caltech RNA-seq\ page. The data shown here are derived from the Raw Signal view from the paired \ 75-mer 200 bp insert size reads. The two replicates of the signal were pooled and normalized\ so that the total genome-wide signal sums to 10 billion.\
\ \Display Conventions and Configuration
\\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the\ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types.\
\ \Credits
\\ This track shows data from the\ Wold Lab at Caltech,\ as part of the ENCODE Consortium. \
\ \Release Notes
\\ This is release 2 (July 2012) of this track which includes two new subtracks for HeLa-S3 and HepG2.\
\ \Data Release Policy
\\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\
\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subTracks\ longLabel Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ parent wgEncodeReg\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.1\ shortLabel Transcription\ showSubtrackColorOnUi on\ track wgEncodeRegTxn\ transformFunc LOG\ type bigWig 0 65500\ viewLimits 0:8\ visibility hide\ wgEncodeReg4Atac ATAC (Layered) bigWig Chromatin accessibility from ATAC-seq signal, averaged by organ/tissue 0 1.2 0 0 0 127 127 127 0 0 0Description
\\ The Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) identifies regions\ of open chromatin, which are often associated with active regulatory elements such as promoters\ and enhancers. This track displays genome-wide chromatin accessibility signal, as determined by\ ENCODE ATAC-seq data across all phases of the project. Higher signal intensity indicates\ increased chromatin accessibility, suggesting potential regulatory activity. The data are\ processed following the\ ENCODE\ ATAC-seq pipeline. Additional chromatin accessibility and transcription factor binding\ datasets are available at the\ ENCODE portal.
\ \\ For each organ, this track provides up to two subtracks averaging ATAC signal:
\- \
- Tissue and Primary Cell averages only the tissue and primary cell experiments. \
- All Biosamples averages every experiment for that organ, including the\ tissue/primary cell ones plus any from cell lines, in vitro differentiated cells, or\ organoids. \
\ Whether one or two subtracks appear for an organ depends on which kinds of biosamples have\ been assayed:
\- \
- Tissue/primary cell only. There are no cell line, in vitro differentiated cell,\ or organoid experiments to include, so the two averages would be computed from the same\ data and produce identical numbers. Only the Tissue and Primary Cell subtrack\ is shown. \
- Cell line, in vitro differentiated cell, or organoid experiments only.\ There are no tissue or primary cell experiments to average, so only the All Biosamples\ subtrack is shown. In this case it represents those experiments. \
- Both kinds of biosamples available. The two averages give different numbers\ because one covers only the tissue and primary cell experiments while the other includes everything together.\ Both subtracks are shown. \
Available Organs and Tissues
\| Organ/Tissue | \Tissue and Primary Cell Subtrack | \All Biosamples Subtrack | \
|---|---|---|
| adipose | – | ✓ |
| adrenal gland | – | ✓ |
| blood | ✓ | ✓ |
| blood vessel | – | ✓ |
| bone marrow | – | ✓ |
| brain | ✓ | ✓ |
| breast | ✓ | ✓ |
| esophagus | – | ✓ |
| gallbladder | – | ✓ |
| heart | – | ✓ |
| large intestine | ✓ | ✓ |
| liver | ✓ | ✓ |
| lung | ✓ | ✓ |
| muscle | – | ✓ |
| nerve | – | ✓ |
| ovary | – | ✓ |
| pancreas | ✓ | ✓ |
| prostate | ✓ | ✓ |
| skin | – | ✓ |
| small intestine | – | ✓ |
| spleen | – | ✓ |
| stomach | – | ✓ |
| testis | – | ✓ |
| thyroid | – | ✓ |
| urinary bladder | – | ✓ |
| uterus | – | ✓ |
Display Conventions and Configuration
\\ By default, this track uses a transparent overlay to visualize data from multiple organs or tissues within\ the same vertical space. For each organ or tissue, signals from all associated experiments were\ averaged to generate the displayed track. Each organ or tissue is assigned a distinct\ color following the\ ENCODE color\ mapping convention,\ selected to be light and saturated to maintain clarity when overlaid. Initially, each layered\ track displays an overlay of five representative organs: blood, brain, kidney, liver, and\ muscle. Clicking on the track opens a details page where you can view and select organs or\ tissues.
\ \ \Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/regulation/organAve/adiposeATAC.bw stdout
Credits
\\ Data were generated by the ENCODE Consortium. We thank the production labs for generating the\ data: Drs. Barbara Wold (Caltech), Michael Snyder, Stephen Montgomery,\ and Will Greenleaf (Stanford), and Yin Shen (UCSF). The data were further processed for\ visualization through a\ collaborative effort between the\ Weng lab and the\ Moore lab\ at UMass Chan Medical School (funded by NIH grant HG012343). Integration and visualization\ were developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K4Me1 histone mark across the genome as\ determined by a ChIP-seq assay. The H3K4me1 histone mark is the mono-methylation of lysine 4\ of the H3 histone protein, and it is associated with enhancers and with DNA regions downstream of\ transcription starts. Additional histone marks and other chromatin associated ChIP-seq data is\ available at the\ Broad Histone page.\
\ \Display Conventions and Configuration
\\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the\ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types.\
\ \Credits
\\ This track shows data from the Bernstein Lab at the Broad Institute, as part of\ the ENCODE Consortium.\
\ \Data Release Policy
\\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\
\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.2\ shortLabel Layered H3K4Me1\ showSubtrackColorOnUi on\ superTrack wgEncodeReg hide\ track wgEncodeRegMarkH3k4me1\ type bigWig 0 10000\ viewLimits 0:50\ visibility hide\ spliceAIsnvsMasked SpliceAI SNVs (masked) bigBed 9 + SpliceAI SNVs (masked) 1 1.2 0 0 0 127 127 127 0 0 0\ Important: The SpliceAI variant impact data on the UCSC Genome Browser is directly from \ Illumina (See Data Access below). However, since SpliceAI refers to the\ algorithm, and not the computed dataset, the data on the Broad server or other sources may have\ some differences between them.\ \
Description
\\ SpliceAI is an open-source deep\ learning algorithm that predicts splicing probability for nucleotides and \ as a result can score DNA variants for splicing impact.\ Such variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\ SpliceAI was developed at Illumina; a \ lookup tool \ is provided by the Broad institute.\
\ \The spliceAI algorithm is run on the genome sequence itself and scores each\ nucleotide for the probability that it is a donor or acceptor site, on both the\ forward and the reverse strand. Then variants are added and the new sequence is\ scored again. The "wildtype" container track shows the scores for the genome\ sequence itself and the "variants" container track shows the impact of all\ possible variants close to known splice sites. The "wildtype" subtracks are\ useful when looking at new transcript models, to evaluate how likely exon\ boundaries are. The "variants" subtracks are used to evaluate the impact of\ variants onto splicing, typically in medical diagnostics.\
\ \Why are some variants not scored by SpliceAI?
\\ SpliceAI only annotates variants close to splice sites of genes defined by the \ Gencode gene annotation track. Additionally, SpliceAI does not annotate variants if they are\ close to chromosome ends (5kb on either side), deletions of length greater than\ twice the input parameter -D, or inconsistent with the reference fasta file.\
\ \What are the differeneces between masked and unmasked tracks?
\\ The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\ and weakening unannotated splice sites, which are typically much less pathogenic than weakening\ annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\ changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\ splicing analysis and masked tracks for variant interpretation.\
\ \Display Conventions and Interpretation
\\ Variants are colored according to Walker et al. 2023 splicing imact:\
\- \
- Predicted impact on splicing: Score >= 0.2 \
- Not informative: Score < 0.2 and > 0.1 \
- No impact on splicing: Score <= 0.1 \
\ The scores range from 0 to 1 and can be interpreted as the \ probability of the variant being splice-altering. In the paper, a detailed characterization is \ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \Methods
\\
The data were downloaded from Illumina. \
The spliceAI scores are represented in the VCF INFO field as \
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain \
- \
- ALT allele \
- Gene name \
- Acceptor gain score \
- Acceptor loss score \
- Donor gain score \
- Donor loss score \
- Relative location of affected cryptic acceptor \
- Relative location of affected acceptor \
- Relative location of affected cryptic donor \
- Relative location of affected donor \
\ Since most of the values are 0 or almost 0, we selected only those variants \ with a score equal to or greater than 0.02.\
\\ The complete processing of this track can be found in the \ makedoc.\
\ \ \Data Access
\ These data are not available for download from the Genome Browser. \ The raw data can be found directly on\ Illumina. \ See below for a copy of the license restrictions pertaining to these data.\ \ \License
\\ FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are \ made available by Illumina only for academic or not-for-profit research only. \ By accessing the SpliceAI data, you acknowledge and agree that you may only \ use this data for your own personal academic or not-for-profit research only, \ and not for any other purposes. You may not use this data for any for-profit, \ clinical, or other commercial purpose without obtaining a commercial license \ from Illumina, Inc.\
\ \Credits
\\ Thanks to Illumina for making the data available. Thanks to Michael Hiller, Francois Lecoquierre and\ Jean-Madeleine de Sainte Agathe for making available and suggesting the SpliceAI wildtype tracks.\
\ \References
\\ Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\ Arbelaez J, Cui W, Schwartz GB et al.\ \ Predicting Splicing from Primary Sequence with Deep Learning.\ Cell. 2019 Jan 24;176(3):535-548.e24.\ PMID: 30661751\
\ \\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC:
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore\ noScoreFilter on\ parent spliceAI off\ priority 1.2\ shortLabel SpliceAI SNVs (masked)\ tableBrowser off\ track spliceAIsnvsMasked\ type bigBed 9 +\ robustPeaks TSS peaks bigBed 8 + FANTOM5: DPI peak, robust set 1 1.2 0 0 0 127 127 127 0 0 0
Description
\\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\
\ \Display Conventions and Configuration
\ \Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \Methods
\Protocol
\Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\
- \
- hCAGE \
- LQhCAGE \
Samples
\Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\
- \
- Primary cell \
- Tissue \
- Cell Line \
- Time course \
- Fractionation \
TSS peaks
\TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\
- \
- TSS (CAGE) peaks\
- \
- the robust peaks \
\
- TSS summary profiles\
- \
- Total counts and TPM (tags per million) in all the samples \
- Maximum counts and TPM among the samples \
\
TSS activity
\\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\
\ \- \
- Categories of individual samples \
- - Cell Line hCAGE \
- - Cell Line LQhCAGE \
- - fractionation hCAGE \
- - Primary cell hCAGE \
- - Primary cell LQhCAGE \
- - Time course hCAGE \
- - Tissue hCAGE \
Data Access
\\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.
\ \Credits
\ \\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.
\ \References
\\
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\
Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\
\
A promoter-level mammalian expression atlas.\
Nature. 2014 Mar 27;507(7493):462-70.\
PMID: 24670764; PMC:
\
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\
N, Daub CO et al.\
\
Unamplified cap analysis of gene expression on a single-molecule sequencer.\
Genome Res. 2011 Jul;21(7):1150-9.\
PMID: 21596820; PMC:
\
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\
Ishikawa-Kato S et al.\
\
Gateways to the FANTOM5 promoter level mammalian expression atlas.\
Genome Biol. 2015 Jan 5;16(1):22.\
PMID: 25723102; PMC:
Description
\\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins present in\ chromatin influence gene expression by changing how accessible the chromatin is to transcription.\ A specific modification of a specific histone protein is called a histone mark. This track\ displays genome-wide enrichment levels of the H3K4me3 histone mark, as determined by ENCODE\ ChIP-seq data across all phases of the project. H3K4me3 refers to the tri-methylation of\ lysine 4 on the H3 histone protein and is associated with active or poised promoters. The data\ are processed following the\ ENCODE Histone\ ChIP-seq pipeline. Additional histone marks and other chromatin-associated ChIP-seq datasets\ are available at the\ ENCODE portal.
\ \\ For each organ, this track provides up to two subtracks averaging H3K4me3 signal:
\- \
- Tissue and Primary Cell averages only the tissue and primary cell experiments. \
- All Biosamples averages every experiment for that organ, including the\ tissue/primary cell ones plus any from cell lines, in vitro differentiated cells, or\ organoids. \
\ Whether one or two subtracks appear for an organ depends on which kinds of biosamples have\ been assayed:
\- \
- Tissue/primary cell only. There are no cell line, in vitro differentiated cell,\ or organoid experiments to include, so the two averages would be computed from the same\ data and produce identical numbers. Only the Tissue and Primary Cell subtrack\ is shown. \
- Cell line, in vitro differentiated cell, or organoid experiments only.\ There are no tissue or primary cell experiments to average, so only the All Biosamples\ subtrack is shown. In this case it represents those experiments. \
- Both kinds of biosamples available. The two averages give different numbers\ because one covers only the tissue and primary cell experiments while the other includes everything together.\ Both subtracks are shown. \
Available Organs and Tissues
\| Organ/Tissue | \Tissue and Primary Cell Subtrack | \All Biosamples Subtrack | \
|---|---|---|
| adipose | – | ✓ |
| adrenal gland | – | ✓ |
| blood | ✓ | ✓ |
| blood vessel | – | ✓ |
| bone | – | ✓ |
| bone marrow | ✓ | ✓ |
| brain | ✓ | ✓ |
| breast | ✓ | ✓ |
| connective tissue | ✓ | ✓ |
| embryo | ✓ | ✓ |
| epithelium | – | ✓ |
| esophagus | – | ✓ |
| eye | ✓ | ✓ |
| heart | ✓ | ✓ |
| kidney | ✓ | ✓ |
| large intestine | ✓ | ✓ |
| liver | ✓ | ✓ |
| lung | ✓ | ✓ |
| mouth | – | ✓ |
| muscle | ✓ | ✓ |
| nerve | – | ✓ |
| ovary | – | ✓ |
| pancreas | ✓ | ✓ |
| parathyroid gland | – | ✓ |
| penis | ✓ | ✓ |
| placenta | – | ✓ |
| prostate | ✓ | ✓ |
| skin | ✓ | ✓ |
| small intestine | – | ✓ |
| spinal cord | – | ✓ |
| spleen | – | ✓ |
| stomach | – | ✓ |
| testis | ✓ | ✓ |
| thymus | – | ✓ |
| thyroid | – | ✓ |
| urinary bladder | – | ✓ |
| uterus | ✓ | ✓ |
| vagina | – | ✓ |
Display Conventions and Configuration
\\ By default, this track uses a transparent overlay to visualize data from multiple organs or tissues within\ the same vertical space. For each organ or tissue, signals from all associated experiments were\ averaged to generate the displayed track. Each organ or tissue is assigned a distinct\ color following the\ ENCODE color\ mapping convention,\ selected to be light and saturated to maintain clarity when overlaid. Initially, each layered\ track displays an overlay of five representative organs: blood, brain, kidney, liver, and\ muscle. Clicking on the track opens a details page where you can view and select organs or\ tissues.
\ \ \Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/regulation/organAve/adiposeH3K4me3.bw stdout
Credits
\\ Data were generated by the ENCODE Consortium. We thank the production labs for generating the\ data: Drs. Bing Ren (UCSD), Bradley Bernstein (Broad),\ John Stamatoyannopoulos (UW), Joseph Costello (UCSF), Michael Snyder (Stanford),\ and Peggy Farnham (USC). The data were further processed for visualization through a collaborative effort between the\ Weng lab and the\ Moore lab\ at UMass Chan Medical School (funded by NIH grant HG012343). Integration and visualization\ were developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K4Me3 histone mark across the genome as\ determined by a ChIP-seq assay. The H3K4Me3 histone mark is the tri-methylation of lysine 4 of the\ H3 histone protein, and it is associated with promoters that are active or poised to be\ activated. Additional histone marks and other chromatin associated ChIP-seq data is available at \ the Broad Histone\ page.\
\ \Display Conventions and Configuration
\\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the\ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types.\
\ \Credits
\\ This track shows data from the Bernstein Lab at the Broad Institute, as part of\ the ENCODE Consortium.\
\ \Data Release Policy
\\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\
\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.3\ shortLabel Layered H3K4Me3\ showSubtrackColorOnUi on\ superTrack wgEncodeReg hide\ track wgEncodeRegMarkH3k4me3\ type bigWig 0 10000\ viewLimits 0:150\ visibility hide\ spliceAIindelsMasked SpliceAI indels (masked) bigBed 9 + SpliceAI Indels (masked) 1 1.3 0 0 0 127 127 127 0 0 0\ Important: The SpliceAI variant impact data on the UCSC Genome Browser is directly from \ Illumina (See Data Access below). However, since SpliceAI refers to the\ algorithm, and not the computed dataset, the data on the Broad server or other sources may have\ some differences between them.\ \
Description
\\ SpliceAI is an open-source deep\ learning algorithm that predicts splicing probability for nucleotides and \ as a result can score DNA variants for splicing impact.\ Such variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\ SpliceAI was developed at Illumina; a \ lookup tool \ is provided by the Broad institute.\
\ \The spliceAI algorithm is run on the genome sequence itself and scores each\ nucleotide for the probability that it is a donor or acceptor site, on both the\ forward and the reverse strand. Then variants are added and the new sequence is\ scored again. The "wildtype" container track shows the scores for the genome\ sequence itself and the "variants" container track shows the impact of all\ possible variants close to known splice sites. The "wildtype" subtracks are\ useful when looking at new transcript models, to evaluate how likely exon\ boundaries are. The "variants" subtracks are used to evaluate the impact of\ variants onto splicing, typically in medical diagnostics.\
\ \Why are some variants not scored by SpliceAI?
\\ SpliceAI only annotates variants close to splice sites of genes defined by the \ Gencode gene annotation track. Additionally, SpliceAI does not annotate variants if they are\ close to chromosome ends (5kb on either side), deletions of length greater than\ twice the input parameter -D, or inconsistent with the reference fasta file.\
\ \What are the differeneces between masked and unmasked tracks?
\\ The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\ and weakening unannotated splice sites, which are typically much less pathogenic than weakening\ annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\ changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\ splicing analysis and masked tracks for variant interpretation.\
\ \Display Conventions and Interpretation
\\ Variants are colored according to Walker et al. 2023 splicing imact:\
\- \
- Predicted impact on splicing: Score >= 0.2 \
- Not informative: Score < 0.2 and > 0.1 \
- No impact on splicing: Score <= 0.1 \
\ The scores range from 0 to 1 and can be interpreted as the \ probability of the variant being splice-altering. In the paper, a detailed characterization is \ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \Methods
\\
The data were downloaded from Illumina. \
The spliceAI scores are represented in the VCF INFO field as \
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain \
- \
- ALT allele \
- Gene name \
- Acceptor gain score \
- Acceptor loss score \
- Donor gain score \
- Donor loss score \
- Relative location of affected cryptic acceptor \
- Relative location of affected acceptor \
- Relative location of affected cryptic donor \
- Relative location of affected donor \
\ Since most of the values are 0 or almost 0, we selected only those variants \ with a score equal to or greater than 0.02.\
\\ The complete processing of this track can be found in the \ makedoc.\
\ \ \Data Access
\ These data are not available for download from the Genome Browser. \ The raw data can be found directly on\ Illumina. \ See below for a copy of the license restrictions pertaining to these data.\ \ \License
\\ FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are \ made available by Illumina only for academic or not-for-profit research only. \ By accessing the SpliceAI data, you acknowledge and agree that you may only \ use this data for your own personal academic or not-for-profit research only, \ and not for any other purposes. You may not use this data for any for-profit, \ clinical, or other commercial purpose without obtaining a commercial license \ from Illumina, Inc.\
\ \Credits
\\ Thanks to Illumina for making the data available. Thanks to Michael Hiller, Francois Lecoquierre and\ Jean-Madeleine de Sainte Agathe for making available and suggesting the SpliceAI wildtype tracks.\
\ \References
\\ Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\ Arbelaez J, Cui W, Schwartz GB et al.\ \ Predicting Splicing from Primary Sequence with Deep Learning.\ Cell. 2019 Jan 24;176(3):535-548.e24.\ PMID: 30661751\
\ \\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC:
Gene: $gene
Type of change: $spliceType
Affected splice location: $relativePos
Score: $AIscore\ noScoreFilter on\ parent spliceAI off\ priority 1.3\ shortLabel SpliceAI indels (masked)\ tableBrowser off\ track spliceAIindelsMasked\ type bigBed 9 +\ Total_counts_multiwig Total counts of CAGE reads bigWig 0 100 FANTOM5: Total counts of CAGE reads 2 1.3 0 0 0 127 127 127 0 0 0
Description
\\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\
\ \Display Conventions and Configuration
\ \Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \Methods
\Protocol
\Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\
- \
- hCAGE \
- LQhCAGE \
Samples
\Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\
- \
- Primary cell \
- Tissue \
- Cell Line \
- Time course \
- Fractionation \
TSS peaks
\TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\
- \
- TSS (CAGE) peaks\
- \
- the robust peaks \
\
- TSS summary profiles\
- \
- Total counts and TPM (tags per million) in all the samples \
- Maximum counts and TPM among the samples \
\
TSS activity
\\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\
\ \- \
- Categories of individual samples \
- - Cell Line hCAGE \
- - Cell Line LQhCAGE \
- - fractionation hCAGE \
- - Primary cell hCAGE \
- - Primary cell LQhCAGE \
- - Time course hCAGE \
- - Tissue hCAGE \
Data Access
\\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.
\ \Credits
\ \\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.
\ \References
\\
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\
Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\
\
A promoter-level mammalian expression atlas.\
Nature. 2014 Mar 27;507(7493):462-70.\
PMID: 24670764; PMC:
\
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\
N, Daub CO et al.\
\
Unamplified cap analysis of gene expression on a single-molecule sequencer.\
Genome Res. 2011 Jul;21(7):1150-9.\
PMID: 21596820; PMC:
\
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\
Ishikawa-Kato S et al.\
\
Gateways to the FANTOM5 promoter level mammalian expression atlas.\
Genome Biol. 2015 Jan 5;16(1):22.\
PMID: 25723102; PMC:
Description
\\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins present in\ chromatin influence gene expression by changing how accessible the chromatin is to transcription.\ A specific modification of a specific histone protein is called a histone mark. This track\ displays genome-wide enrichment levels of the H3K27ac histone mark, as determined by ENCODE\ ChIP-seq data across all phases of the project. H3K27ac refers to the acetylation of lysine 27\ on the H3 histone protein and is associated with active enhancers and promoters. The data are\ processed following the\ ENCODE Histone\ ChIP-seq pipeline. Additional histone marks and other chromatin-associated ChIP-seq datasets\ are available at the\ ENCODE portal.
\ \\ For each organ, this track provides up to two subtracks averaging H3K27ac signal:
\- \
- Tissue and Primary Cell averages only the tissue and primary cell experiments. \
- All Biosamples averages every experiment for that organ, including the\ tissue/primary cell ones plus any from cell lines, in vitro differentiated cells, or\ organoids. \
\ Whether one or two subtracks appear for an organ depends on which kinds of biosamples have\ been assayed:
\- \
- Tissue/primary cell only. There are no cell line, in vitro differentiated cell,\ or organoid experiments to include, so the two averages would be computed from the same\ data and produce identical numbers. Only the Tissue and Primary Cell subtrack\ is shown. \
- Cell line, in vitro differentiated cell, or organoid experiments only.\ There are no tissue or primary cell experiments to average, so only the All Biosamples\ subtrack is shown. In this case it represents those experiments. \
- Both kinds of biosamples available. The two averages give different numbers\ because one covers only the tissue and primary cell experiments while the other includes everything together.\ Both subtracks are shown. \
Available Organs and Tissues
\| Organ/Tissue | \Tissue and Primary Cell Subtrack | \All Biosamples Subtrack | \
|---|---|---|
| adipose | – | ✓ |
| adrenal gland | – | ✓ |
| blood | ✓ | ✓ |
| blood vessel | – | ✓ |
| bone | – | ✓ |
| bone marrow | ✓ | ✓ |
| brain | ✓ | ✓ |
| breast | ✓ | ✓ |
| connective tissue | ✓ | ✓ |
| embryo | ✓ | ✓ |
| epithelium | – | ✓ |
| esophagus | – | ✓ |
| eye | – | ✓ |
| heart | ✓ | ✓ |
| kidney | ✓ | ✓ |
| large intestine | ✓ | ✓ |
| liver | ✓ | ✓ |
| lung | ✓ | ✓ |
| mouth | – | ✓ |
| muscle | ✓ | ✓ |
| nerve | – | ✓ |
| ovary | – | ✓ |
| pancreas | ✓ | ✓ |
| parathyroid gland | – | ✓ |
| penis | ✓ | ✓ |
| placenta | – | ✓ |
| prostate | ✓ | ✓ |
| skin | ✓ | ✓ |
| small intestine | – | ✓ |
| spinal cord | – | ✓ |
| spleen | – | ✓ |
| stomach | – | ✓ |
| testis | – | ✓ |
| thymus | – | ✓ |
| thyroid | – | ✓ |
| urinary bladder | – | ✓ |
| uterus | ✓ | ✓ |
| vagina | – | ✓ |
Display Conventions and Configuration
\\ By default, this track uses a transparent overlay to visualize data from multiple organs or tissues within\ the same vertical space. For each organ or tissue, signals from all associated experiments were\ averaged to generate the displayed track. Each organ or tissue is assigned a distinct\ color following the\ ENCODE color\ mapping convention,\ selected to be light and saturated to maintain clarity when overlaid. Initially, each layered\ track displays an overlay of five representative organs: blood, brain, kidney, liver, and\ muscle. Clicking on the track opens a details page where you can view and select organs or\ tissues.
\ \ \Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/regulation/organAve/adiposeH3K27ac.bw stdout
Credits
\\ Data were generated by the ENCODE Consortium. We thank the production labs for generating the\ data: Drs. Bing Ren (UCSD), Bradley Bernstein (Broad),\ John Stamatoyannopoulos (UW), Joseph Costello (UCSF), Michael Snyder (Stanford),\ and Peggy Farnham (USC). The data were further processed for visualization through a collaborative effort between the\ Weng lab and the\ Moore lab\ at UMass Chan Medical School (funded by NIH grant HG012343). Integration and visualization\ were developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ Chemical modifications (e.g., methylation and acetylation) to the histone proteins\ present in chromatin influence gene expression by changing how\ accessible the chromatin is to transcription. A specific modification of\ a specific histone protein is called a histone mark.\ This track shows the levels of enrichment of the H3K27Ac histone mark across the genome as\ determined by a ChIP-seq assay. The H3K27Ac histone mark is the acetylation of lysine 27 of the H3\ histone protein, and it is thought to enhance transcription possibly by blocking the\ spread of the repressive histone mark H3K27Me3. Additional histone marks and other chromatin \ associated ChIP-seq data is available at the \ Broad Histone page.\
\ \Display Conventions and Configuration
\\ By default, this track uses a transparent overlay method of displaying data from a number of cell\ lines in the same vertical space. Each of the cell lines in this track\ is associated with a particular color, and these colors are relatively light and saturated so\ as to work best with the transparent overlay. The color of these tracks\ match their versions from their lifted source on the hg19 assembly. The colors are consistent with the \ other hg19 lifted tracks located in the ENCODE Regulation\ supertrack, with the exception being the DNase tracks, as they were not lifted from hg19 and are\ colored to reflect similarity of cell types. \
\ \Credits
\\ This track shows data from the Bernstein Lab at the Broad Institute, as part of\ the ENCODE Consortium.\
\ \Data Release Policy
\\ Primary ENCODE data produced during the 2007-2012 production phase were subject to a restriction\ period. However, the data here are past those restrictions and are freely available.\ The full data release policy for ENCODE is available\ here.\
\ regulation 1 aggregate transparentOverlay\ allButtonPair on\ container multiWig\ dragAndDrop subtracks\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE\ maxHeightPixels 100:30:11\ noInherit on\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 1.4\ shortLabel Layered H3K27Ac\ showSubtrackColorOnUi on\ superTrack wgEncodeReg full\ track wgEncodeRegMarkH3k27ac\ type bigWig 0 10000\ viewLimits 0:100\ visibility full\ Max_counts_multiwig Max counts of CAGE reads bigWig 0 100 FANTOM5: Max counts of CAGE reads 2 1.4 0 0 0 127 127 127 0 0 0Description
\\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\
\ \Display Conventions and Configuration
\ \Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \Methods
\Protocol
\Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\
- \
- hCAGE \
- LQhCAGE \
Samples
\Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\
- \
- Primary cell \
- Tissue \
- Cell Line \
- Time course \
- Fractionation \
TSS peaks
\TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\
- \
- TSS (CAGE) peaks\
- \
- the robust peaks \
\
- TSS summary profiles\
- \
- Total counts and TPM (tags per million) in all the samples \
- Maximum counts and TPM among the samples \
\
TSS activity
\\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\
\ \- \
- Categories of individual samples \
- - Cell Line hCAGE \
- - Cell Line LQhCAGE \
- - fractionation hCAGE \
- - Primary cell hCAGE \
- - Primary cell LQhCAGE \
- - Time course hCAGE \
- - Tissue hCAGE \
Data Access
\\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.
\ \Credits
\ \\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.
\ \References
\\
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\
Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\
\
A promoter-level mammalian expression atlas.\
Nature. 2014 Mar 27;507(7493):462-70.\
PMID: 24670764; PMC:
\
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\
N, Daub CO et al.\
\
Unamplified cap analysis of gene expression on a single-molecule sequencer.\
Genome Res. 2011 Jul;21(7):1150-9.\
PMID: 21596820; PMC:
\
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\
Ishikawa-Kato S et al.\
\
Gateways to the FANTOM5 promoter level mammalian expression atlas.\
Genome Biol. 2015 Jan 5;16(1):22.\
PMID: 25723102; PMC:
Description
\\ The NMD escape ruleset tracks show predicted regions where a premature termination\ codon (PTC) or frameshift variant is likely to cause the transcript to\ escape nonsense-mediated decay (NMD), leading to the production of an\ aberrant truncated protein rather than degradation of the mRNA.\
\ \\ The following rules were applied to transcript annotations to define predicted\ NMD escape regions (Nagy et al, Trends Biochem Sci 1998 and Lindeboom et al, Nat Genet 2016):\
\ \- \
- 50 bp rule: Coding positions within 50 bp (mRNA distance)\ upstream of the transcript's last splice junction, plus any coding\ sequence downstream of that junction. A PTC in this window has no\ downstream exon-exon junction (or is too close to the last one) for\ NMD to be triggered. The last junction is determined from all exons\ of the transcript, including 3'UTR introns, since those introns\ deposit EJCs that can trigger NMD. For transcripts with no 3'UTR\ intron (the common case), this reduces to the entire last coding exon\ plus the last 50 bp of the penultimate coding exon. For transcripts\ with a 3'UTR intron (~4.5% of MANE transcripts), the last\ junction sits downstream of the stop codon; the escape region is only\ the stretch of CDS within 50 bp (mRNA distance) of that junction, so\ if the junction is more than 50 bp past the stop codon no CDS position\ escapes via this rule. \
- No downstream EJC rule: Transcripts with a single coding exon and\ no 3'UTR intron. No exon-exon junction exists downstream of the stop\ codon, so no EJC is deposited that could trigger NMD at a PTC. This\ covers truly intronless transcripts as well as transcripts whose only\ introns are in the 5′UTR (where EJCs are cleared by the scanning 40S\ ribosomal subunit or sit upstream of the stop and are never encountered by\ the terminating ribosome). Transcripts with a single coding exon but a\ 3'UTR intron are excluded, because that intron deposits an EJC\ downstream of the stop codon that can trigger NMD. \
- Start-proximal region: The first 100 bp of coding nucleotides.\ PTCs in this region do not lead to NMD, a phenomenon known as start-proximal\ NMD insensitivity. One proposed mechanism, supported by experimental\ evidence, is re-initiation of translation at a downstream AUG codon. \
- Long exon rule: Coding exons longer than 400 bp (excluding the last\ coding exon, which is already covered by the 50 bp rule). Lindeboom et al.\ 2016 showed a marked drop in NMD efficiency (61% vs. 98%) for PTCs in exons\ longer than 400 nt, likely because the large distance between the stalled\ ribosome and the downstream EJC reduces UPF1-EJC contact. \
\ Non-coding transcripts (where CDS start equals CDS end) are excluded.\ Overlapping regions from multiple transcripts with identical coordinates and\ the same rule are collapsed into a single item, with the contributing\ transcript IDs stored as a comma-separated list.\
\ \\ Three versions of this track are available, based on different transcript annotation sets:\
\- \
- NMD escape MANE:\ Derived from the MANE Select plus MANE Plus Clinical transcript set, a\ jointly curated NCBI/EBI annotation that defines a single high-confidence\ transcript per protein-coding gene (Select), supplemented by additional\ transcripts of clinical importance (Plus Clinical). \
- NMD escape Gencode:\ Derived from GENCODE V49 transcript annotations. \
- NMD escape NCBI RefSeq:\ Derived from NCBI RefSeq Curated transcript annotations (NM_ and NR_\ accessions; predicted XM_/XR_ models are excluded). \
Background
\\ NMD escape regions were predicted based on the Exon Junction Complex\ (EJC)-dependent model of NMD. During normal translation, EJCs are deposited at\ exon-exon junctions after splicing. As the ribosome translates the mRNA, it\ displaces each EJC it encounters. When a PTC causes the ribosome to stall\ prematurely, any remaining downstream EJCs recruit surveillance factors\ (notably UPF1) that trigger mRNA degradation via NMD.\
\ \\ However, PTCs located in the last coding exon or within approximately 50 bp\ upstream of the last exon-exon junction are too close to the final EJC (or\ have no downstream EJC at all) for NMD to be triggered—the transcript\ escapes degradation. Conversely, PTCs located more than 50–55 bp\ upstream of the last exon-exon junction are predicted to elicit NMD.\
\ \\ Additional escape mechanisms, supported by Lindeboom et al. 2016 and other\ studies, are captured by three further rules:\
\- \
- Transcripts with no EJC downstream of the stop codon (single coding\ exon and no 3'UTR intron) cannot trigger NMD, so any PTC in the coding\ sequence escapes. 5′UTR introns are tolerated because their EJCs are\ upstream of the stop. \
- Start-proximal PTCs (within the first 100 bp of coding sequence)\ escape NMD, likely through translation re-initiation at a downstream AUG\ codon. \
- PTCs in long coding exons (>400 bp) show reduced NMD\ efficiency (61% vs. 98% for shorter exons in Lindeboom et al. 2016),\ likely because the large distance between the stalled ribosome and the\ downstream EJC reduces UPF1-EJC contact. \
Display Conventions and Configuration
\\ Regions from overlapping transcripts with the same coordinates are collapsed into\ a single item. The gene symbol is shown as the item name. Mouseover displays the\ NMD escape rule and the number of transcripts. The details page lists all\ contributing transcript IDs.\
\ \\ Items are colored by the NMD escape rule that applies:\
\- \
- Red – Rule 1: CDS within\ 50 bp (mRNA distance) upstream of the last splice junction (or\ downstream of it). A PTC here is too close to the last exon junction\ complex (EJC) for NMD to be triggered. \
- Orange – Rule 2: Single coding\ exon and no 3'UTR intron. No EJC is deposited downstream of the stop\ codon, so all PTCs in the coding sequence escape NMD. \
- Dark red – Rule 3: First 100 bp\ of coding nucleotides. PTCs in this start-proximal region are insensitive\ to NMD, possibly due to translation re-initiation at a downstream AUG codon. \
- Gold – Rule 4: Coding exons\ longer than 400 bp (excluding the last coding exon). NMD efficiency is\ reduced in these long exons because the PTC is far from the downstream\ exon-exon junction. \
Data Access
\\ The data underlying this track can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Guido Neidhardt for suggesting this track at HUGO VEPTC 2025 and Andreas Lahner\ for feedback. Thanks to the Decipher Genome Browser team for introducing the idea of a\ track.\
\ \References
\ \\
Kurosaki T, Popp MW, Maquat LE.\
\
Quality and quantity control of gene expression by nonsense-mediated mRNA decay.\
Nat Rev Mol Cell Biol. 2019 Jul;20(7):406-420.\
PMID: 30992545; PMC:
\
Lindeboom RGH, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\ Nagy E, Maquat LE.\ \ A rule for termination-codon position within intron-containing genes: when nonsense affects RNA\ abundance.\ Trends Biochem Sci. 1998 Jun;23(6):198-9.\ PMID: 9644970\
\ \ \ genes 1 bigDataUrl /gbdb/hg38/nmd/nmdEscMane.bb\ dataVersion MANE 1.5\ defaultLabelFields ncbiIds\ filterLabel.ncbiIds RefSeq accession (e.g. "*NM_000546*")\ filterLabel.transcripts Gencode accession (e.g. "*ENST00000269305*")\ filterText.ncbiIds *\ filterText.transcripts *\ filterType.ncbiIds wildcard\ filterType.transcripts wildcard\ html nmdEscTranscripts\ labelFields ncbiIds,name,transcripts\ labelSeparator " / "\ longLabel NMD escape predictions: MANE Select Plus Clinical transcripts\ mouseOverField mouseover\ parent nmd on\ priority 1.4\ shortLabel NMD Escape MANE\ track nmdEscMane\ type bigBed 9 +\ visibility pack\ cCREs_view cCREs bigBed ENCODE4 Core Collection of 170 biosamples with sample-specific cCRE annotations & epigenomic signals 4 1.5 0 0 0 127 127 127 0 0 0 regulation 1 filterLabel.cCRE_class cCRE class\ filterType.cCRE_class multipleListOr\ filterValues.cCRE_class CA-only|Chromatin accessibility only (CA-only),CA-CTCF|Chromatin accessibility + CTCF (CA-CTCF),CA-H3K4me3|Chromatin accessibility + H3K4me3 (CA-H3K4me3),CA-TF|Chromatin accessibility + transcription factor (CA-TF),Distal enhancer|Distal enhancer,Proximal enhancer|Proximal enhancer,Promoter|Promoter,Low-DNase|Low-DNase\ longLabel ENCODE4 Core Collection of 170 biosamples with sample-specific cCRE annotations & epigenomic signals\ parent coreCcres\ shortLabel cCREs\ track cCREs_view\ type bigBed\ view cCREs_view\ visibility squish\ CTCF_view CTCF bigWig ENCODE4 Core Collection of 170 biosamples with sample-specific cCRE annotations & epigenomic signals 2 1.5 0 0 0 127 127 127 0 0 0 regulation 0 longLabel ENCODE4 Core Collection of 170 biosamples with sample-specific cCRE annotations & epigenomic signals\ parent coreCcres\ shortLabel CTCF\ track CTCF_view\ type bigWig\ view CTCF_view\ visibility full\ wgEncodeReg4MarkCtcf CTCF (Layered) bigWig CTCF binding signal from ChIP-seq, averaged by organ/tissue 0 1.5 0 0 0 127 127 127 0 0 0Description
\\ CTCF (CCCTC-binding factor) is a multifunctional DNA-binding protein involved in chromatin\ organization, transcriptional regulation, and insulation of regulatory elements. This track\ displays genome-wide CTCF binding signal, as determined by CTCF ChIP-seq data across all\ phases of the ENCODE project. CTCF plays a key role in establishing chromatin loops and\ boundary elements that influence gene expression and higher-order genome architecture. CTCF\ binding sites often occur at insulators and chromatin loop anchors, which help define\ topologically associating domains (TADs) and mediate enhancer-promoter interactions. The data\ are processed following the\ ENCODE\ transcription factor ChIP-seq pipeline. Additional transcription factor binding and\ chromatin accessibility datasets are available at the\ ENCODE portal.
\ \\ For each organ, this track provides up to two subtracks averaging CTCF signal:
\- \
- Tissue and Primary Cell averages only the tissue and primary cell experiments. \
- All Biosamples averages every experiment for that organ, including the\ tissue/primary cell ones plus any from cell lines, in vitro differentiated cells, or\ organoids. \
\ Whether one or two subtracks appear for an organ depends on which kinds of biosamples have\ been assayed:
\- \
- Tissue/primary cell only. There are no cell line, in vitro differentiated cell,\ or organoid experiments to include, so the two averages would be computed from the same\ data and produce identical numbers. Only the Tissue and Primary Cell subtrack\ is shown. \
- Cell line, in vitro differentiated cell, or organoid experiments only.\ There are no tissue or primary cell experiments to average, so only the All Biosamples\ subtrack is shown. In this case it represents those experiments. \
- Both kinds of biosamples available. The two averages give different numbers\ because one covers only the tissue and primary cell experiments while the other includes everything together.\ Both subtracks are shown. \
Available Organs and Tissues
\| Organ/Tissue | \Tissue and Primary Cell Subtrack | \All Biosamples Subtrack | \
|---|---|---|
| adipose | – | ✓ |
| adrenal gland | – | ✓ |
| blood | ✓ | ✓ |
| blood vessel | – | ✓ |
| bone | – | ✓ |
| bone marrow | – | ✓ |
| brain | ✓ | ✓ |
| breast | ✓ | ✓ |
| connective tissue | ✓ | ✓ |
| embryo | – | ✓ |
| epithelium | – | ✓ |
| esophagus | – | ✓ |
| eye | ✓ | ✓ |
| heart | ✓ | ✓ |
| kidney | ✓ | ✓ |
| large intestine | ✓ | ✓ |
| liver | ✓ | ✓ |
| lung | ✓ | ✓ |
| mouth | – | ✓ |
| muscle | ✓ | ✓ |
| nerve | – | ✓ |
| ovary | – | ✓ |
| pancreas | ✓ | ✓ |
| parathyroid gland | – | ✓ |
| penis | – | ✓ |
| placenta | – | ✓ |
| prostate | ✓ | ✓ |
| skin | ✓ | ✓ |
| small intestine | – | ✓ |
| spinal cord | – | ✓ |
| spleen | – | ✓ |
| stomach | – | ✓ |
| testis | – | ✓ |
| thyroid | – | ✓ |
| uterus | ✓ | ✓ |
| vagina | – | ✓ |
Display Conventions and Configuration
\\ By default, this track uses a transparent overlay to visualize data from multiple organs or tissues within\ the same vertical space. For each organ or tissue, signals from all associated experiments were\ averaged to generate the displayed track. Each organ or tissue is assigned a distinct\ color following the\ ENCODE color\ mapping convention,\ selected to be light and saturated to maintain clarity when overlaid. Initially, each layered\ track displays an overlay of five representative organs: blood, brain, kidney, liver, and\ muscle. Clicking on the track opens a details page where you can view and select organs or\ tissues.
\ \ \Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/regulation/organAve/adiposeCTCF.bw stdout
Credits
\\ Data were generated by the ENCODE Consortium. We thank the production labs for generating the\ data: Drs. Bradley Bernstein (Broad), John Stamatoyannopoulos (UW),\ Michael Snyder (Stanford), Richard Myers (HAIB), and Vishwanath Iyer (UTA). The data were\ further processed for visualization through a collaborative effort between the\ Weng lab and the\ Moore lab\ at UMass Chan Medical School (funded by NIH grant HG012343). Integration and visualization\ were developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ This track displays biosample-specific candidate cis-regulatory elements (cCREs) \ alongside genome-wide epigenomic signals for the ENCODE Core Collection of 170 \ ENCODE biosamples that have been fully profiled using four core assays: \ DNase-seq, ChIP-seq for the histone modifications H3K4me3 and H3K27ac, \ and ChIP-seq for CTCF binding.
\- \
- DNase-seq identifies regions of open chromatin commonly associated with enhancers, \ promoters, and insulators. \
- ChIP-seq for H3K4me3 and H3K27ac marks active and poised promoters and enhancers. \
- CTCF ChIP-seq identifies chromatin loop anchors and insulator elements. \
\ Each subtrack corresponds to an individual experiment in a specific biosample. \ These data form the basis for generating biosample-specific annotations of \ cCREs, which compose the fifth subtrack for the biosample.
\\ Additional epigenomic datasets are available at the ENCODE portal, and further exploration \ of cCREs and their supporting data is available through the SCREEN web tool, accessible via the \ track details page.
\ \Display Conventions and Configurations
\\ Each biosample contains five subtracks (DNase, CTCF, H3K27ac, and H3K4me3 signals \ and biosample-specific cCREs). Click a specific biosample type and organ/tissue \ combination to view available datasets. Epigenomic subtracks can be further \ filtered by the signal type. Below is a graphic summarizing biosampling available:
\\
\ Each signal track is colored based on the type of signal.\ The cCREs subtrack displays each active cCRE in the corresponding biosample \ as a colored box by type \
- \
- Promoter in red\
- Proximal enhancer in orange\
- Distal\ enhancer in yellow\
- CA-H3K4me3 in\ pink\
- CA-CTCF\ in blue\
- CA-TF in\ dark purple\
- CA in green\
- TF in\ light purple\
\
\ For items in the cCREs track, mousing over shows the element ID, along with a linkout to \ the corresponding element on SCREEN, and the cCRE class.
\ \Methods
\\ The DNase-seq data were processed using the ENCODE DNase-seq pipeline, the H3K4me3 and H3K27ac ChIP-seq \ data were processed using the ENCODE histone ChIP-seq pipeline, and the CTCF ChIP-seq data were \ processed using the ENCODE transcription factor ChIP-seq pipeline.
\\ In addition to the cell type-agnostic classification (described in the cCRE Registry track\ in this collection), we evaluated the biochemical activity of each cCRE in individual\ biosamples using the corresponding biosample-specific DNase, H3K4me3, H3K27ac, and CTCF data.\ This allowed us to annotate active cCREs in individual biosamples, included as the cCRE\ subtrack for each biosample. cCREs with low DNase Z-scores in individual biosamples were\ deemed to be inactive and labeled with "Low Chromatin Accessibility."\
\ \Data Access
\\ All data is available from the ENCODE data portal.
\ \\ The data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\ files that can be downloaded from\ our download server.
\\
The cCREs tracks in this data are found as bigBed files, and the biosignal tracks as bigWig files.\
See the Data format link besides the specific data track for a URL to the file on our download\
server. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/ccre/coreCollection/ENCFF811RQX.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/ccre/coreCollection/ENCFF013UBZ_ENCFF901QWB_ENCFF972ZHA_ENCFF500RDL.bb stdout
Credits
\\ Data were generated by the ENCODE Consortium. We thank the production labs for generating\ the DNase-seq and ChIP-seq data: Bing Ren (UCSD), Bradley Bernstein (Broad), Gregory\ Crawford (Duke), John Stamatoyannopoulos (UW), Michael Snyder (Stanford), Peggy Farnham\ (USC), and Richard Myers (HAIB).
\\ The DNase-seq and ChIP-seq data were further processed for visualization through a\ collaborative effort between the Weng lab and the Moore lab at UMass Chan Medical School\ (funded by NIH grant HG012343). Integration and visualization were developed by Drs. Mingshi\ Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School, who were part of the\ ENCODE Data Analysis Center. We thank the ENCODE production labs for generating the data.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T,\
Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N, Fu Y et\
al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ The NMD escape ruleset tracks show predicted regions where a premature termination\ codon (PTC) or frameshift variant is likely to cause the transcript to\ escape nonsense-mediated decay (NMD), leading to the production of an\ aberrant truncated protein rather than degradation of the mRNA.\
\ \\ The following rules were applied to transcript annotations to define predicted\ NMD escape regions (Nagy et al, Trends Biochem Sci 1998 and Lindeboom et al, Nat Genet 2016):\
\ \- \
- 50 bp rule: Coding positions within 50 bp (mRNA distance)\ upstream of the transcript's last splice junction, plus any coding\ sequence downstream of that junction. A PTC in this window has no\ downstream exon-exon junction (or is too close to the last one) for\ NMD to be triggered. The last junction is determined from all exons\ of the transcript, including 3'UTR introns, since those introns\ deposit EJCs that can trigger NMD. For transcripts with no 3'UTR\ intron (the common case), this reduces to the entire last coding exon\ plus the last 50 bp of the penultimate coding exon. For transcripts\ with a 3'UTR intron (~4.5% of MANE transcripts), the last\ junction sits downstream of the stop codon; the escape region is only\ the stretch of CDS within 50 bp (mRNA distance) of that junction, so\ if the junction is more than 50 bp past the stop codon no CDS position\ escapes via this rule. \
- No downstream EJC rule: Transcripts with a single coding exon and\ no 3'UTR intron. No exon-exon junction exists downstream of the stop\ codon, so no EJC is deposited that could trigger NMD at a PTC. This\ covers truly intronless transcripts as well as transcripts whose only\ introns are in the 5′UTR (where EJCs are cleared by the scanning 40S\ ribosomal subunit or sit upstream of the stop and are never encountered by\ the terminating ribosome). Transcripts with a single coding exon but a\ 3'UTR intron are excluded, because that intron deposits an EJC\ downstream of the stop codon that can trigger NMD. \
- Start-proximal region: The first 100 bp of coding nucleotides.\ PTCs in this region do not lead to NMD, a phenomenon known as start-proximal\ NMD insensitivity. One proposed mechanism, supported by experimental\ evidence, is re-initiation of translation at a downstream AUG codon. \
- Long exon rule: Coding exons longer than 400 bp (excluding the last\ coding exon, which is already covered by the 50 bp rule). Lindeboom et al.\ 2016 showed a marked drop in NMD efficiency (61% vs. 98%) for PTCs in exons\ longer than 400 nt, likely because the large distance between the stalled\ ribosome and the downstream EJC reduces UPF1-EJC contact. \
\ Non-coding transcripts (where CDS start equals CDS end) are excluded.\ Overlapping regions from multiple transcripts with identical coordinates and\ the same rule are collapsed into a single item, with the contributing\ transcript IDs stored as a comma-separated list.\
\ \\ Three versions of this track are available, based on different transcript annotation sets:\
\- \
- NMD escape MANE:\ Derived from the MANE Select plus MANE Plus Clinical transcript set, a\ jointly curated NCBI/EBI annotation that defines a single high-confidence\ transcript per protein-coding gene (Select), supplemented by additional\ transcripts of clinical importance (Plus Clinical). \
- NMD escape Gencode:\ Derived from GENCODE V49 transcript annotations. \
- NMD escape NCBI RefSeq:\ Derived from NCBI RefSeq Curated transcript annotations (NM_ and NR_\ accessions; predicted XM_/XR_ models are excluded). \
Background
\\ NMD escape regions were predicted based on the Exon Junction Complex\ (EJC)-dependent model of NMD. During normal translation, EJCs are deposited at\ exon-exon junctions after splicing. As the ribosome translates the mRNA, it\ displaces each EJC it encounters. When a PTC causes the ribosome to stall\ prematurely, any remaining downstream EJCs recruit surveillance factors\ (notably UPF1) that trigger mRNA degradation via NMD.\
\ \\ However, PTCs located in the last coding exon or within approximately 50 bp\ upstream of the last exon-exon junction are too close to the final EJC (or\ have no downstream EJC at all) for NMD to be triggered—the transcript\ escapes degradation. Conversely, PTCs located more than 50–55 bp\ upstream of the last exon-exon junction are predicted to elicit NMD.\
\ \\ Additional escape mechanisms, supported by Lindeboom et al. 2016 and other\ studies, are captured by three further rules:\
\- \
- Transcripts with no EJC downstream of the stop codon (single coding\ exon and no 3'UTR intron) cannot trigger NMD, so any PTC in the coding\ sequence escapes. 5′UTR introns are tolerated because their EJCs are\ upstream of the stop. \
- Start-proximal PTCs (within the first 100 bp of coding sequence)\ escape NMD, likely through translation re-initiation at a downstream AUG\ codon. \
- PTCs in long coding exons (>400 bp) show reduced NMD\ efficiency (61% vs. 98% for shorter exons in Lindeboom et al. 2016),\ likely because the large distance between the stalled ribosome and the\ downstream EJC reduces UPF1-EJC contact. \
Display Conventions and Configuration
\\ Regions from overlapping transcripts with the same coordinates are collapsed into\ a single item. The gene symbol is shown as the item name. Mouseover displays the\ NMD escape rule and the number of transcripts. The details page lists all\ contributing transcript IDs.\
\ \\ Items are colored by the NMD escape rule that applies:\
\- \
- Red – Rule 1: CDS within\ 50 bp (mRNA distance) upstream of the last splice junction (or\ downstream of it). A PTC here is too close to the last exon junction\ complex (EJC) for NMD to be triggered. \
- Orange – Rule 2: Single coding\ exon and no 3'UTR intron. No EJC is deposited downstream of the stop\ codon, so all PTCs in the coding sequence escape NMD. \
- Dark red – Rule 3: First 100 bp\ of coding nucleotides. PTCs in this start-proximal region are insensitive\ to NMD, possibly due to translation re-initiation at a downstream AUG codon. \
- Gold – Rule 4: Coding exons\ longer than 400 bp (excluding the last coding exon). NMD efficiency is\ reduced in these long exons because the PTC is far from the downstream\ exon-exon junction. \
Data Access
\\ The data underlying this track can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Guido Neidhardt for suggesting this track at HUGO VEPTC 2025 and Andreas Lahner\ for feedback. Thanks to the Decipher Genome Browser team for introducing the idea of a\ track.\
\ \References
\ \\
Kurosaki T, Popp MW, Maquat LE.\
\
Quality and quantity control of gene expression by nonsense-mediated mRNA decay.\
Nat Rev Mol Cell Biol. 2019 Jul;20(7):406-420.\
PMID: 30992545; PMC:
\
Lindeboom RGH, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\ Nagy E, Maquat LE.\ \ A rule for termination-codon position within intron-containing genes: when nonsense affects RNA\ abundance.\ Trends Biochem Sci. 1998 Jun;23(6):198-9.\ PMID: 9644970\
\ \ \ genes 1 bigDataUrl /gbdb/hg38/nmd/nmdEscRegions.bb\ dataVersion Gencode V49\ filterLabel.transcripts Filter on transcript ID (e.g. "*ENST00000269305*")\ filterText.transcripts *\ filterType.transcripts wildcard\ html nmdEscTranscripts\ longLabel NMD escape predictions: Gencode transcripts\ mouseOverField mouseover\ parent nmd on\ priority 1.5\ shortLabel NMD Escape Gencode\ track nmdEscGencode\ type bigBed 9 +\ visibility dense\ wgEncodeRegDnaseClustered DNase Clusters bed 5 . DNase I Hypersensitivity Peak Clusters from ENCODE (95 cell types) 0 1.6 0 0 0 127 127 127 1 0 0Description
\\ This track shows clusters of DNaseI hypersensitivity derived from assays in 95 cell types\ by the\ John Stamatoyannapoulos lab\ at the University of Washington from September 2007 to January 2011, as part of the\ ENCODE project first production phase.\ Regulatory regions in general, and promoters in particular, tend to be DNase-sensitive. \
\ \\ Additional views of this data sites are displayed from the\ DNaseI HS track.\ The peaks in that track are the basis for the clusters shown here, \ which combine data from peaks from the different cell lines.\ Please note that track colors for the DNase tracks are based on similiarity of cell types,\ while there is different coloring for cell types on the ENCODE hg38\ Transcription track,\ Layered H3K4Me1 track,\ Layered H3K4Me3 track, and\ Layered H3K27Ac track,\ which match the coloring used in their previous versions lifted from the hg19 assembly.\
\ \ \Display Conventions and Configuration
\\ A gray box indicates the extent of the hypersensitive region. \ The darkness is proportional to the maximum signal strength observed in any cell line. \ The number to the left of the box shows how many cell lines are hypersensitive in the region. \ The track can be configured to restrict the display to elements above a specified score \ in the range 1-1000 (where score is based on signal strength).\
\ \Methods
\\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline (July 2014\ specification), diagrammed here:\
\ \\
\
Credit: Qian Alvin Qin, X. Liu lab\
\
\
\
Credit: Qian Alvin Qin, X. Liu lab\
\ Briefly, sequence files were aligned to the hg38 (GRCh38) genome assembly augmented with 'sponge'\ sequence (ref). Multi-mapped reads were removed, as were reads that aligned to 'sponge' or\ mitochondiral sequence. Results from all replicates were pooled, and further processed by\ the Hotspot program to call peaks.\
\ \\ Peaks of DNaseI hypersensitivity from the ENCODE DNase Analysis Pipeline at UCSC\ were assigned normalized scores (by UCSC regClusterMakeTableOfTables) in the range 0-1000 based\ on the \ narrowPeak\ signalValue and then clustered on score (by UCSC regCluster) to generate singly-linked clusters. \ Additional documentation on the methods used to identify hypersensitive sites are \ available from the\ DNaseI HS track.\
\ \Credits
\\ This track is based on sequence data from the University of Washington ENCODE group, \ with subsequent processing by UCSC.\ For additional credits and references, see the\ DNaseI HS track.\
\ regulation 1 controlledVocabulary cellType=wgEncodeCell treatment=wgEncodeTreatment\ group regulation\ html wgEncodeRegDnaseClustered\ inputTableFieldDisplay cellType treatment\ inputTrackTable wgEncodeRegDnaseClusteredInputs\ longLabel DNase I Hypersensitivity Peak Clusters from ENCODE (95 cell types)\ priority 1.6\ scoreFilter 200\ scoreFilterLimits 1:1000\ shortLabel DNase Clusters\ sourceTable wgEncodeRegDnaseClusteredSources\ spectrum on\ superTrack wgEncodeReg hide\ track wgEncodeRegDnaseClustered\ type bed 5 .\ nmdEscNcbiRefSeq NMD Escape RefSeq bigBed 9 + NMD escape predictions: NCBI RefSeq Curated transcripts 0 1.6 0 0 0 127 127 127 0 0 0Description
\\ The NMD escape ruleset tracks show predicted regions where a premature termination\ codon (PTC) or frameshift variant is likely to cause the transcript to\ escape nonsense-mediated decay (NMD), leading to the production of an\ aberrant truncated protein rather than degradation of the mRNA.\
\ \\ The following rules were applied to transcript annotations to define predicted\ NMD escape regions (Nagy et al, Trends Biochem Sci 1998 and Lindeboom et al, Nat Genet 2016):\
\ \- \
- 50 bp rule: Coding positions within 50 bp (mRNA distance)\ upstream of the transcript's last splice junction, plus any coding\ sequence downstream of that junction. A PTC in this window has no\ downstream exon-exon junction (or is too close to the last one) for\ NMD to be triggered. The last junction is determined from all exons\ of the transcript, including 3'UTR introns, since those introns\ deposit EJCs that can trigger NMD. For transcripts with no 3'UTR\ intron (the common case), this reduces to the entire last coding exon\ plus the last 50 bp of the penultimate coding exon. For transcripts\ with a 3'UTR intron (~4.5% of MANE transcripts), the last\ junction sits downstream of the stop codon; the escape region is only\ the stretch of CDS within 50 bp (mRNA distance) of that junction, so\ if the junction is more than 50 bp past the stop codon no CDS position\ escapes via this rule. \
- No downstream EJC rule: Transcripts with a single coding exon and\ no 3'UTR intron. No exon-exon junction exists downstream of the stop\ codon, so no EJC is deposited that could trigger NMD at a PTC. This\ covers truly intronless transcripts as well as transcripts whose only\ introns are in the 5′UTR (where EJCs are cleared by the scanning 40S\ ribosomal subunit or sit upstream of the stop and are never encountered by\ the terminating ribosome). Transcripts with a single coding exon but a\ 3'UTR intron are excluded, because that intron deposits an EJC\ downstream of the stop codon that can trigger NMD. \
- Start-proximal region: The first 100 bp of coding nucleotides.\ PTCs in this region do not lead to NMD, a phenomenon known as start-proximal\ NMD insensitivity. One proposed mechanism, supported by experimental\ evidence, is re-initiation of translation at a downstream AUG codon. \
- Long exon rule: Coding exons longer than 400 bp (excluding the last\ coding exon, which is already covered by the 50 bp rule). Lindeboom et al.\ 2016 showed a marked drop in NMD efficiency (61% vs. 98%) for PTCs in exons\ longer than 400 nt, likely because the large distance between the stalled\ ribosome and the downstream EJC reduces UPF1-EJC contact. \
\ Non-coding transcripts (where CDS start equals CDS end) are excluded.\ Overlapping regions from multiple transcripts with identical coordinates and\ the same rule are collapsed into a single item, with the contributing\ transcript IDs stored as a comma-separated list.\
\ \\ Three versions of this track are available, based on different transcript annotation sets:\
\- \
- NMD escape MANE:\ Derived from the MANE Select plus MANE Plus Clinical transcript set, a\ jointly curated NCBI/EBI annotation that defines a single high-confidence\ transcript per protein-coding gene (Select), supplemented by additional\ transcripts of clinical importance (Plus Clinical). \
- NMD escape Gencode:\ Derived from GENCODE V49 transcript annotations. \
- NMD escape NCBI RefSeq:\ Derived from NCBI RefSeq Curated transcript annotations (NM_ and NR_\ accessions; predicted XM_/XR_ models are excluded). \
Background
\\ NMD escape regions were predicted based on the Exon Junction Complex\ (EJC)-dependent model of NMD. During normal translation, EJCs are deposited at\ exon-exon junctions after splicing. As the ribosome translates the mRNA, it\ displaces each EJC it encounters. When a PTC causes the ribosome to stall\ prematurely, any remaining downstream EJCs recruit surveillance factors\ (notably UPF1) that trigger mRNA degradation via NMD.\
\ \\ However, PTCs located in the last coding exon or within approximately 50 bp\ upstream of the last exon-exon junction are too close to the final EJC (or\ have no downstream EJC at all) for NMD to be triggered—the transcript\ escapes degradation. Conversely, PTCs located more than 50–55 bp\ upstream of the last exon-exon junction are predicted to elicit NMD.\
\ \\ Additional escape mechanisms, supported by Lindeboom et al. 2016 and other\ studies, are captured by three further rules:\
\- \
- Transcripts with no EJC downstream of the stop codon (single coding\ exon and no 3'UTR intron) cannot trigger NMD, so any PTC in the coding\ sequence escapes. 5′UTR introns are tolerated because their EJCs are\ upstream of the stop. \
- Start-proximal PTCs (within the first 100 bp of coding sequence)\ escape NMD, likely through translation re-initiation at a downstream AUG\ codon. \
- PTCs in long coding exons (>400 bp) show reduced NMD\ efficiency (61% vs. 98% for shorter exons in Lindeboom et al. 2016),\ likely because the large distance between the stalled ribosome and the\ downstream EJC reduces UPF1-EJC contact. \
Display Conventions and Configuration
\\ Regions from overlapping transcripts with the same coordinates are collapsed into\ a single item. The gene symbol is shown as the item name. Mouseover displays the\ NMD escape rule and the number of transcripts. The details page lists all\ contributing transcript IDs.\
\ \\ Items are colored by the NMD escape rule that applies:\
\- \
- Red – Rule 1: CDS within\ 50 bp (mRNA distance) upstream of the last splice junction (or\ downstream of it). A PTC here is too close to the last exon junction\ complex (EJC) for NMD to be triggered. \
- Orange – Rule 2: Single coding\ exon and no 3'UTR intron. No EJC is deposited downstream of the stop\ codon, so all PTCs in the coding sequence escape NMD. \
- Dark red – Rule 3: First 100 bp\ of coding nucleotides. PTCs in this start-proximal region are insensitive\ to NMD, possibly due to translation re-initiation at a downstream AUG codon. \
- Gold – Rule 4: Coding exons\ longer than 400 bp (excluding the last coding exon). NMD efficiency is\ reduced in these long exons because the PTC is far from the downstream\ exon-exon junction. \
Data Access
\\ The data underlying this track can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Guido Neidhardt for suggesting this track at HUGO VEPTC 2025 and Andreas Lahner\ for feedback. Thanks to the Decipher Genome Browser team for introducing the idea of a\ track.\
\ \References
\ \\
Kurosaki T, Popp MW, Maquat LE.\
\
Quality and quantity control of gene expression by nonsense-mediated mRNA decay.\
Nat Rev Mol Cell Biol. 2019 Jul;20(7):406-420.\
PMID: 30992545; PMC:
\
Lindeboom RGH, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\ Nagy E, Maquat LE.\ \ A rule for termination-codon position within intron-containing genes: when nonsense affects RNA\ abundance.\ Trends Biochem Sci. 1998 Jun;23(6):198-9.\ PMID: 9644970\
\ \ \ genes 1 bigDataUrl /gbdb/hg38/nmd/nmdEscNcbiRefSeq.bb\ dataVersion GCF_000001405.40-RS_2025_08\ filterLabel.transcripts Filter on transcript ID (e.g. "NM_005228*")\ filterText.transcripts *\ filterType.transcripts wildcard\ html nmdEscTranscripts\ longLabel NMD escape predictions: NCBI RefSeq Curated transcripts\ mouseOverField mouseover\ parent nmd off\ priority 1.6\ shortLabel NMD Escape RefSeq\ track nmdEscNcbiRefSeq\ type bigBed 9 +\ visibility hide\ wgEncodeReg4Txn Transcription (Layered) bigWig Strand-specific transcription signal measured by total RNA-seq, averaged by organ/tissue 0 1.6 0 0 0 127 127 127 0 0 0Description
\\ For each organ, this track provides up to two subtracks averaging total RNA-seq signal per\ strand:
\- \
- Tissue and Primary Cell averages only the tissue and primary cell experiments. \
- All Biosamples averages every experiment for that organ, including the\ tissue/primary cell ones plus any from cell lines, in vitro differentiated cells, or\ organoids. \
\ Each subtrack provides separate signal tracks for the plus and minus genomic strands.\ Whether one or two pairs of strand subtracks appear for an organ depends on which kinds of\ biosamples have been assayed:
\- \
- Tissue/primary cell only. There are no cell line, in vitro differentiated cell,\ or organoid experiments to include, so the two averages would be computed from the same\ data and produce identical numbers. Only the Tissue and Primary Cell pair\ (plus and minus strand) is shown. \
- Cell line, in vitro differentiated cell, or organoid experiments only.\ There are no tissue or primary cell experiments to average, so only the All Biosamples\ pair is shown. In this case it represents those experiments. \
- Both kinds of biosamples available. The two averages give different numbers\ because one covers only the tissue and primary cell experiments while the other includes everything together.\ Both pairs of subtracks are shown. \
Available Organs and Tissues
\| Organ/Tissue | \Tissue and Primary Cell Subtrack | \All Biosamples Subtrack | \
|---|---|---|
| adipose | ✓ | – |
| adrenal gland | ✓ | – |
| blood | ✓ | ✓ |
| blood vessel | ✓ | – |
| brain | ✓ | ✓ |
| breast | ✓ | ✓ |
| connective tissue | ✓ | ✓ |
| embryo | ✓ | ✓ |
| epithelium | ✓ | ✓ |
| esophagus | ✓ | – |
| eye | ✓ | – |
| gallbladder | ✓ | – |
| heart | ✓ | ✓ |
| kidney | ✓ | ✓ |
| large intestine | ✓ | ✓ |
| liver | ✓ | ✓ |
| lung | ✓ | ✓ |
| mouth | ✓ | – |
| muscle | ✓ | ✓ |
| nerve | ✓ | – |
| nose | ✓ | – |
| ovary | ✓ | – |
| pancreas | ✓ | ✓ |
| placenta | ✓ | – |
| prostate | ✓ | ✓ |
| skin | ✓ | ✓ |
| small intestine | ✓ | – |
| spinal cord | ✓ | – |
| spleen | ✓ | – |
| stomach | ✓ | – |
| testis | ✓ | – |
| thyroid | ✓ | – |
| trachea | ✓ | – |
| urinary bladder | ✓ | – |
| uterus | ✓ | – |
| vagina | ✓ | – |
Display Conventions and Configuration
\\ By default, this track uses a transparent overlay to visualize data from multiple organs or tissues within\ the same vertical space. For each organ or tissue, signals from all associated experiments were\ averaged to generate the displayed track. Each organ or tissue is assigned a distinct\ color following the\ ENCODE color\ mapping convention,\ selected to be light and saturated to maintain clarity when overlaid. Initially, each layered\ track displays an overlay of five representative organs: blood, brain, kidney, liver, and\ muscle. Clicking on the track opens a details page where you can view and select organs or\ tissues. Subtracks can be further filtered by strandedness (+ strand or - strand) and life\ stage of the biosample.
\ \Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/regulation/organAve/adiposePlus.bw stdout
Credits
\\ Data were generated by the ENCODE Consortium. We thank the production labs for generating the\ data: Drs. Barbara Wold (Caltech) and Thomas Gingeras (CSHL). The data were further processed\ for visualization through a collaborative effort between the\ Weng lab and the\ Moore lab\ at UMass Chan Medical School (funded by NIH grant HG012343). Integration and visualization\ were developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ The NMDetective-AI tracks display deep-learning predictions of\ nonsense-mediated mRNA decay (NMD) efficiency for every possible stop-gain\ single-nucleotide variant in MANE Select transcripts. The model was trained on\ ~14,000 somatic premature termination codons (PTCs) measured by allele-specific\ expression in large human cohorts (TCGA) and was tested on ~1,800 held-out\ germline PTCs (TCGA germline and GTEx) (Veiner et al.).\
\ \\ Predictions are continuous: higher values indicate that a PTC at that codon is\ predicted to trigger NMD (the mRNA is degraded); lower values indicate that the\ PTC is predicted to evade NMD (the truncated mRNA may be translated into an\ aberrant protein). The output is normalized against canonical controls so that\ +0.5 corresponds to full NMD efficiency at a PTC and −0.5\ corresponds to no NMD efficiency (a last-exon PTC). The scale is not strictly\ bounded: due to measurement and prediction noise, observed values fall in\ roughly −1.1 to +1.5, with the bulk of items inside the nominal\ −0.5 to +0.5 interval.\
\ \Subtracks
\| Track | Description |
|---|---|
| NMDetective-AI | \Signal track (bigWig) showing the position-averaged prediction across\ all stop-gain SNVs at each codon. Useful for browsing efficiency along a\ transcript at a glance. |
| NMDetective-AI variants | \Per-stop-gain track (bigBed) with one item per (transcript, codon,\ mutant codon) combination. Each item is colored by its prediction and\ carries the reference and mutant codon, amino-acid position, transcript\ accession, and a pre-rendered mouseover summary. |
Display Conventions and Configuration
\\ The NMDetective-AI signal track is drawn with a default y-axis range of\ −1.1 to +1.5. Positions with positive values (predicted NMD-triggering)\ are shown above the baseline; positions with negative values (predicted NMD\ escape) are shown below.\
\ \\ The NMDetective-AI variants track colors each item along a continuous\ diverging Okabe-Ito palette running from blue (most NMD-evading) through grey\ (near zero) to vermillion (most NMD-triggering). The mouseover verdict groups\ items into three categories using the binarization thresholds derived in the\ Veiner et al. Methods (Gaussian mixture model fit to gnomAD\ predictions):\
\- \
- NMD-evading – prediction\ ≤ −0.17. \
- Intermediate / uncertain –\ −0.17 < prediction < +0.43. \
- NMD-triggering – prediction\ ≥ +0.43. \
\ Mouseover for each variant shows the codon change, the prediction value with\ its NMD verdict, and the MANE Select transcript accession. Click an item to\ see the full set of fields on the details page.\
\ \Methods
\\ NMDetective-AI is a fine-tuned version of the Orthrus mRNA foundation model\ (Mamba architecture, ~10M parameters), trained on full-length transcript\ sequences encoded as a six-track representation (four nucleotide channels,\ one CDS-start channel, one splice-site channel). The model integrates\ allele-specific PTC expression from large-scale genomic data with mRNA\ language-model embeddings and high-throughput deep mutational scanning, and\ predicts NMD efficiency for every possible stop-gain mutation in every codon\ of a MANE Select transcript.\
\ \\ The training set comprised 14,337 somatic PTCs from TCGA, with chromosomes 1\ and 20 held out as a validation set. The held-out test set comprised 1,065\ germline PTCs from TCGA and 763 germline PTCs from GTEx. The authors report\ that the model's accuracy on the somatic validation set approaches the\ empirical reproducibility ceiling of the underlying allele-specific\ expression measurements.\
\ \\ The publicly released predictions cover MANE Select transcripts at Gencode\ v46. Predictions for transcripts outside the MANE Select set are not yet\ available; broader coverage is planned by the authors after peer review.\
\ \\ Source files were obtained from the\ Vejni/NMDetectiveAI\ GitHub repository (supplementary files\ NMDetectiveAI_MANE.bw.gz and NMDetectiveAI_MANE.bed.gz) and\ processed at UCSC: the bigWig is used as supplied; the BED was recolored with\ the diverging Okabe-Ito palette described above, rescored into the\ 0–1000 BED range, and augmented with a pre-rendered mouseover column\ before conversion to bigBed.\
\ \\ Note: the manuscript is currently a bioRxiv preprint and has not yet\ completed peer review. Predictions may be refreshed when the final version\ of the data is released.\
\ \Data Access
\\ The data underlying these tracks can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Marcell Veiner and Fran Supek for sharing the NMDetective-AI\ predictions ahead of publication, and to the wider Veiner et al.\ author group for developing the model.\
\ \References
\\ Veiner M, Toledano I, Palou-Márquez G, Lehner B, Supek F.\ \ Quantitative prediction of nonsense-mediated mRNA decay across human genes by\ genomic language model and large-scale mutational scanning.\ bioRxiv. 2026 Mar 26.\ doi: 10.64898/2026.03.24.714003.\ Supplementary prediction files at\ github.com/Vejni/NMDetectiveAI.\
\ genes 0 autoScale off\ bigDataUrl /gbdb/hg38/nmd/nmdDetectAi.bw\ color 128,0,128\ html nmdDetectiveAi\ longLabel NMDetective-AI: Deep-learning NMD efficiency prediction per position (MANE Select only)\ maxHeightPixels 128:120:8\ parent nmd off\ priority 1.7\ shortLabel NMDetective-AI\ track nmdDetectiveAi\ type bigWig\ viewLimits -1.1:1.5\ visibility hide\ wgEncodeReg4TfPeaks TF rPeaks bigBed 12 + Transcription factor representative peak (rPeak) clusters from ENCODE 4 0 1.7 0 0 0 127 127 127 1 0 0Description
\ \This track displays representative ChIP-seq peaks (rPeaks) and detected DNA motif\ sites for regulatory regions in the human genome, identified using ENCODE ChIP-seq data\ across all phases of the project. The regions are bound by DNA-associated proteins\ involved in transcriptional regulation, including RNA polymerase, transcription factors\ (TFs), and chromatin remodeling proteins. Sequence-specific TFs bind directly to short\ DNA motifs via their DNA-binding domains, while other proteins associate indirectly\ through interactions with sequence-specific TFs. Chromatin immunoprecipitation followed\ by sequencing (ChIP-seq) is a high-throughput method used to map genome-wide protein-DNA\ interactions. Regions with high ChIP-seq signal (peaks) frequently contain binding sites\ for the assayed protein. For each DNA-associated protein, ChIP-seq peaks from all ENCODE\ biosamples were integrated to define a set of representative peaks (rPeaks).\ For detailed information on individual factors and their motifs, see\ Factorbook.org.
\ \Display Conventions and Configuration
\ \Each rPeak is colored in grayscale by maximum ChIP-seq signal across contributing\ biosamples (darker = higher signal, score 0 to 1,000):
\| Color | \Score | \
|---|---|
| \ | 1000 (highest signal) | \
| \ | 750 | \
| \ | 500 | \
| \ | 250 | \
| \ | 1 (lowest signal) | \
Low-scoring peaks appear in very light gray by default; the\ Shade of lowest-scoring items setting can darken them for easier visibility.\ Note: Increasing the shade reduces the visible contrast between low and\ high scoring peaks.
\ \If the rPeak overlaps a cognate TF motif site from the collection in Andrews\ et al., 2023, the motif site is colored green using decorators.
\ \Clicking on an rPeak provides detailed information about the biosamples where the\ rPeak was detected, including the count of biosamples with contributing ChIP-seq peaks,\ the total number of biosamples assayed for the protein, and a per-biosample table\ listing each contributing experiment with its ENCODE accession. The protein name links\ to Factorbook, and overlapping\ ENCODE candidate cis-regulatory elements (cCREs) link to\ SCREEN.
\ \By default, rPeaks for all 912 DNA-associated proteins with ENCODE ChIP-seq data are\ displayed. A filter is available to select specific proteins.
\ \Methods
\ \2,509 ENCODE ChIP-seq experiments were integrated from 912 DNA-associated proteins across\ 1,152 unique biosamples to produce representative peaks (rPeaks) for each protein. The\ processing steps were as follows:
\ \- \
- ChIP-seq peaks for each protein were downloaded from the\ ENCODE Portal, generated using the\ ENCODE\ Transcription Factor ChIP-seq Processing Pipeline. \
- Using bedtools merge, ChIP-seq peaks were clustered from the protein’s experiments\ across all biosamples. \
- In each cluster, the peak with the highest ChIP signal (normalized by sequencing depth)\ was selected as the rPeak. \
- All ChIP-seq peaks overlapping this rPeak by at least one nucleotide were marked as\ represented and removed from subsequent clustering rounds. \
- Steps 2-4 were repeated until a final list of non-overlapping rPeaks was generated,\ representing all ChIP-seq peaks for the protein. \
Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigBed\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.
\ \\
These files may also be locally explored using our tool bigBedToBed,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain features confined to a given range, e.g.,\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 https://hgdownload.soe.ucsc.edu/gbdb/hg38/encode4/regulation/tfRpeak/TFrPeakClusters.bb stdout
Credits
\ \This track was made possible by the efforts of the ENCODE Consortium, ENCODE\ ChIP-seq production laboratories, and the ENCODE Data Coordination Center for generating\ and processing the ChIP-seq datasets. The ENCODE accession numbers for the constituent\ datasets are accessible from the peak details page. The data were generated by the\ following production labs: Drs. Bradley Bernstein (Broad),\ John Stamatoyannopoulos (UW), Kevin Struhl (HMS), Kevin White (UChicago),\ Michael Snyder (Stanford), Peggy Farnham (USC), Richard Myers (HAIB),\ Sherman Weissman (Yale), Tim Reddy (Duke), Vishwanath Iyer (UTA),\ and Xiang-Dong Fu (UCSD).
\ \The data were further processed for visualization through a collaborative effort between\ the Weng lab and the\ Moore lab at UMass\ Chan Medical School (funded by NIH grant HG012343). Special thanks to Drs. Mingshi Gao,\ Greg Andrews, Jill Moore, and Zhiping Weng at UMass Chan Medical School, who were members\ of the ENCODE Data Analysis Center, for developing this track, including providing the rPeak\ and motif datasets and associated metadata and building the track.
\ \References
\ \\ Andrews G, Fan K, Pratt HE, Phalke N, Zoonomia Consortium, Karlsson EK, Lindblad-Toh K,\ Weng Z.\ \ Mammalian evolution of human cis-regulatory elements and transcription factor binding\ sites.\ Science. 2023;380(6643):eabn7930.\ PMID: 37104580\
\ \\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
\ Pratt HE, Andrews GR, Phalke N, Huey JD, Purcaro MJ, van der Velde A, Moore JE, Weng Z.\ \ Factorbook: an updated catalog of transcription factor motifs and candidate regulatory\ motif sites.\ Nucleic Acids Research. 2022;50(D1):D141-D149.\ PMID: 34747468\
\ regulation 1 bigDataUrl /gbdb/hg38/encode4/regulation/tfRpeak/TFrPeakClusters.bb\ decorator.default.bigDataUrl /gbdb/hg38/encode4/regulation/tfRpeak/TFrPeakClustersDecorator.bb\ detailsDynamicTable json_table|Experiments supporting this rPeak\ filterType.factor multipleListOr\ filterValues.factor 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610,ZNF614,ZNF615,ZNF616,ZNF619,ZNF623,ZNF624,ZNF629,ZNF639,ZNF644,ZNF646,ZNF652,ZNF654,ZNF660,ZNF664,ZNF671,ZNF674,ZNF677,ZNF678,ZNF680,ZNF687,ZNF691,ZNF692,ZNF697,ZNF700,ZNF703,ZNF707,ZNF709,ZNF70,ZNF710,ZNF713,ZNF737,ZNF740,ZNF75A,ZNF761,ZNF764,ZNF766,ZNF768,ZNF76,ZNF770,ZNF772,ZNF773,ZNF775,ZNF776,ZNF777,ZNF778,ZNF781,ZNF782,ZNF784,ZNF785,ZNF786,ZNF788,ZNF791,ZNF792,ZNF79,ZNF7,ZNF800,ZNF816,ZNF830,ZNF839,ZNF83,ZNF843,ZNF84,ZNF850,ZNF865,ZNF883,ZNF891,ZNF8,ZSCAN12,ZSCAN16,ZSCAN18,ZSCAN20,ZSCAN21,ZSCAN22,ZSCAN23,ZSCAN29,ZSCAN30,ZSCAN31,ZSCAN32,ZSCAN4,ZSCAN5A,ZSCAN5C,ZSCAN9,ZXDB,ZXDC,ZZZ3\ html wgEncodeReg4TfPeaks.html\ itemRgb on\ labelFields factor\ longLabel Transcription factor representative peak (rPeak) clusters from ENCODE 4\ mouseOverField factor\ priority 1.7\ scoreMax 1000\ scoreMin 1\ shortLabel TF rPeaks\ spectrum on\ superTrack wgEncodeReg4 hide\ track wgEncodeReg4TfPeaks\ type bigBed 12 +\ urls exp="https://www.encodeproject.org/experiments/$$/" cCRE="https://screen.wenglab.org/search/?q=$$&assembly=GRCh38" factor="https://www.factorbook.org/tf/human/$$/function"\ visibility hide\ wgEncodeRegDnaseWig DNase Signal bigWig 0 10000 DNase I Hypersensitivity Signal Colored by Similarity from ENCODE 0 1.8 0 0 0 127 127 127 0 0 0Description
\\ This track provides an integrated display of DNase hypersensitivity in multiple\ cell types using overlapping colored graphs of signal density with graph colors\ assigned to cell types based on similarity of signal. The track is based on\ results of experiments performed by the John Stamatoyannapoulos lab at the\ University of Washington from September 2007 to January 2011 as part of the\ ENCODE project first production phase.
\\ The signal graphs displayed here are also included in the comprehensive\ DNaseI HS track,\ which also provides peak and region calls and uses the same coloring based on\ similiarity of cell types (please note there is different coloring on the ENCODE hg38\ Transcription track,\ Layered H3K4Me1 track,\ Layered H3K4Me3 track, and\ Layered H3K27Ac track,\ which match the coloring used in their previous versions lifted from the hg19 assembly). \
\ \Methods
\\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline\ described in the \ DNaseI HS\ track description.\ Signal graphs were normalized so the average value genome-wide is 1.\ Colors for the signal graphs were assigned by the UCSC BigWigCluster tool.\ \
\ The cell types were clustered into a binary tree, a rainbow was cast to the leaf nodes providing coloring based on similarity. \
\\
\
Credit: Chris Eisenhart, J. Kent lab \
\
\
\
\
Credit: Chris Eisenhart, J. Kent lab \
Credits
\\ The processed data for this track were generated at UCSC.\ Credits for the primary data underlying this track are included in the\ DNaseI HS\ track description.\
\ \References
\\ Miga KH, Eisenhart C, Kent WJ.\ \ Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false\ positive alignments.\ Nucleic Acids Res. 2015 Nov 16;43(20):e133.\ PMID: 26163063\
\\
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\
H, Vernot B et al.\
\
The accessible chromatin landscape of the human genome.\
Nature. 2012 Sep 6;489(7414):75-82.\
PMID: 22955617; PMC:
\ See also the references in the\ DNaseI HS\ track.\
\ regulation 1 aggregate transparentOverlay\ configurable on\ container multiWig\ controlledVocabulary cellType=wgEncodeCell\ dimensions dimA=tissue dimB=cancer\ filterComposite dimA dimB\ group regulation\ html wgEncodeRegDnaseSignal\ longLabel DNase I Hypersensitivity Signal Colored by Similarity from ENCODE\ maxHeightPixels 128:64:11\ priority 1.8\ shortLabel DNase Signal\ showSubtrackColorOnUi on\ sortOrder subtrackColor=+ cellType=+ tissue=+\ subGroup1 cellType Cell_Type A549=A549 AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 AoAF=AoAF bone_marrow_MSC=bone_marrow_MSC BE2_C=BE2_C BJ=BJ CD20_RO01778=CD20+_RO01778 Caco-2=Caco-2 GM04503=GM04503 GM04504=GM04504 GM06990=GM06990 GM12865=GM12865 GM12878=GM12878 H7-hESC=H7-hESC HA-h=HA-h HA-sp=HA-sp HAEpiC=HAEpiC HAc=HAc HBMEC=HBMEC HBVSMC=HBVSMC HCF=HCF HCFaa=HCFaa HCM=HCM HCPEpiC=HCPEpiC HCT-116=HCT-116 HConF=HConF HEEpiC=HEEpiC HFF-Myc=HFF-Myc HFF=HFF HGF=HGF HIPEpiC=HIPEpiC HL-60=HL-60 HMEC=HMEC HMF=HMF HMVEC-LBl=HMVEC-LBl HMVEC-LLy=HMVEC-LLy HMVEC-dAd=HMVEC-dAd HMVEC-dBl-Ad=HMVEC-dBl-Ad HMVEC-dBl-Neo=HMVEC-dBl-Neo HMVEC-dLy-Ad=HMVEC-dLy-Ad HMVEC-dLy-Neo=HMVEC-dLy-Neo HMVEC-dNeo=HMVEC-dNeo HNPCEpiC=HNPCEpiC HPAF=HPAF HPF=HPF HPdLF=HPdLF HRCEpiC=HRCEpiC HRE=HRE HRGEC=HRGEC HRPEpiC=HRPEpiC HSMM=HSMM HSMMtube=HSMMtube HUVEC=HUVEC HVMF=HVMF HeLa-S3=HeLa-S3 HepG2=HepG2 Jurkat=Jurkat K562=K562 LHCN-M2=LHCN-M2 LNCaP=LNCaP M059J=M059J MCF-7=MCF-7 Monocytes_CD14_RO01746=Monocytes-CD14+_RO01746 NB4=NB4 NH-A=NH-A NHBE_RA=NHBE_RA NHDF-Ad=NHDF-Ad NHDF-neo=NHDF-neo NHEK=NHEK NHLF=NHLF NT2-D1=NT2-D1 PANC-1=PANC-1 PrEC=PrEC RPMI-7951=RPMI-7951 RPTEC=RPTEC SAEC=SAEC SK-N-MC=SK-N-MC SK-N-SH_RA=SK-N-SH_RA SKMC=SKMC T-47D=T-47D Th1=Th1 Th1_Wb54553204=Th1_Wb54553204 Th2=Th2 WERI-Rb-1=WERI-Rb-1 WI-38=WI-38\ subGroup2 treatment Treatment diffProtA_5d=diffProtA_5d diffProtA_14d=diffProtA_14d DIFF_4d=DIFF_4d n_a=n/a 4OHTAM_20nM_72hr=4OHTAM_20nM_72hr Estradiol_ctrl_0hr=Estradiol_ctrl_0hr Estradiol_100nM_1hr=Estradiol_100nM_1hr\ subGroup3 tissue Tissue blood=blood blood_vessel=blood_vessel bone_marrow=bone_marrow brain=brain breast=breast cervix=cervix colon=colon embryo=embryo esophagus=esophagus eye=eye heart=heart kidney=kidney liver=liver lung=lung muscle=muscle pancreas=pancreas periodontium=periodontium periodontium=periodontium placenta=placenta prostate=prostate skin=skin spinal_cord=spinal_cord testis=testis\ subGroup4 cancer Cancer cancer=cancer normal=normal unknown=unknown\ subGroup5 subtrackColor Similarity\ superTrack wgEncodeReg hide\ track wgEncodeRegDnaseWig\ type bigWig 0 10000\ viewLimits 0:200\ visibility hide\ knownGeneV48 GENCODE V48 bigGenePred knownGenePep knownGeneMrna GENCODE V48 3 1.8 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 48, April 2025) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The v48 release was derived from the GTF file that contains annotations only on the main\ chromosomes. Statistics for this build and information on how they were generated can be found on\ the GENCODE site.
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is mostly based on the annotation type:
\- \
- MANE: MANE Select Plus Clinical transcripts.\ For non-MANE transcripts, the following conventions apply.\
- coding: protein coding transcripts, including polymorphic\ pseudogenes\
- non-coding: non-protein coding transcripts\
- pseudogene: pseudogene transcript annotations\
- problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain) \
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \ \Squishy-pack Display
\\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:
\ Protein_coding genes\- \
- MANE or Ensembl canonical\
- \
- 1st: MANE Select / Ensembl canonical \
- 2nd: MANE Plus Clinical \
\
- Coding biotypes\
- \
- 1st: protein_coding and protein_coding_LoF \
- 2nd: NMDs and NSDs \
- 3rd: retained intron and protein_coding_CDS_not_defined \
\
- Completeness\
- \
- 1st: full length \
- 2nd: CDS start/end not found \
\
- CARS score (only for coding transcripts) \
- Transcript genomic span and length (only for non-coding transcripts) \
- \
- Transcript biotype\
- \
- 1st: transcript biotype identical to gene biotype \
\
- Ensembl canonical \
- GENCODE basic \
- Transcript genomic span \
- Transcript length \
Methods
\\
The GENCODE v48 track was built from the GENCODE downloads file \
gencode.v48.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources\
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney. This version of the track was\ generated by Jonathan Casper.
\ \References
\ \\
Mudge JM, Carbonell-Sala S, Diekhans M, Martinez JG, Hunt T, Jungreis I, Loveland JE, Arnan C,\
Barnes I, Bennett R et al.\
\
GENCODE 2025: reference gene annotation for human and mouse.\
Nucleic Acids Res. 2025 Jan 6;53(D1):D966-D975.\
PMID: 39565199; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV48.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV48\ group genes\ hgsid on\ html knownGeneV48\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V48\ maxItems 50000\ parent knownGeneArchive\ priority 1.8\ searchIndex name\ shortLabel GENCODE V48\ squishyPackField rank\ squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)\ squishyPackPoint 1\ track knownGeneV48\ type bigGenePred knownGenePep knownGeneMrna\ visibility pack\ nmdDetectiveAiBed NMDetective-AI variants bigBed 9 + NMDetective-AI: Per-stop-gain predictions for every codon (MANE Select only) 0 1.8 0 0 0 127 127 127 0 0 0Description
\\ The NMDetective-AI tracks display deep-learning predictions of\ nonsense-mediated mRNA decay (NMD) efficiency for every possible stop-gain\ single-nucleotide variant in MANE Select transcripts. The model was trained on\ ~14,000 somatic premature termination codons (PTCs) measured by allele-specific\ expression in large human cohorts (TCGA) and was tested on ~1,800 held-out\ germline PTCs (TCGA germline and GTEx) (Veiner et al.).\
\ \\ Predictions are continuous: higher values indicate that a PTC at that codon is\ predicted to trigger NMD (the mRNA is degraded); lower values indicate that the\ PTC is predicted to evade NMD (the truncated mRNA may be translated into an\ aberrant protein). The output is normalized against canonical controls so that\ +0.5 corresponds to full NMD efficiency at a PTC and −0.5\ corresponds to no NMD efficiency (a last-exon PTC). The scale is not strictly\ bounded: due to measurement and prediction noise, observed values fall in\ roughly −1.1 to +1.5, with the bulk of items inside the nominal\ −0.5 to +0.5 interval.\
\ \Subtracks
\| Track | Description |
|---|---|
| NMDetective-AI | \Signal track (bigWig) showing the position-averaged prediction across\ all stop-gain SNVs at each codon. Useful for browsing efficiency along a\ transcript at a glance. |
| NMDetective-AI variants | \Per-stop-gain track (bigBed) with one item per (transcript, codon,\ mutant codon) combination. Each item is colored by its prediction and\ carries the reference and mutant codon, amino-acid position, transcript\ accession, and a pre-rendered mouseover summary. |
Display Conventions and Configuration
\\ The NMDetective-AI signal track is drawn with a default y-axis range of\ −1.1 to +1.5. Positions with positive values (predicted NMD-triggering)\ are shown above the baseline; positions with negative values (predicted NMD\ escape) are shown below.\
\ \\ The NMDetective-AI variants track colors each item along a continuous\ diverging Okabe-Ito palette running from blue (most NMD-evading) through grey\ (near zero) to vermillion (most NMD-triggering). The mouseover verdict groups\ items into three categories using the binarization thresholds derived in the\ Veiner et al. Methods (Gaussian mixture model fit to gnomAD\ predictions):\
\- \
- NMD-evading – prediction\ ≤ −0.17. \
- Intermediate / uncertain –\ −0.17 < prediction < +0.43. \
- NMD-triggering – prediction\ ≥ +0.43. \
\ Mouseover for each variant shows the codon change, the prediction value with\ its NMD verdict, and the MANE Select transcript accession. Click an item to\ see the full set of fields on the details page.\
\ \Methods
\\ NMDetective-AI is a fine-tuned version of the Orthrus mRNA foundation model\ (Mamba architecture, ~10M parameters), trained on full-length transcript\ sequences encoded as a six-track representation (four nucleotide channels,\ one CDS-start channel, one splice-site channel). The model integrates\ allele-specific PTC expression from large-scale genomic data with mRNA\ language-model embeddings and high-throughput deep mutational scanning, and\ predicts NMD efficiency for every possible stop-gain mutation in every codon\ of a MANE Select transcript.\
\ \\ The training set comprised 14,337 somatic PTCs from TCGA, with chromosomes 1\ and 20 held out as a validation set. The held-out test set comprised 1,065\ germline PTCs from TCGA and 763 germline PTCs from GTEx. The authors report\ that the model's accuracy on the somatic validation set approaches the\ empirical reproducibility ceiling of the underlying allele-specific\ expression measurements.\
\ \\ The publicly released predictions cover MANE Select transcripts at Gencode\ v46. Predictions for transcripts outside the MANE Select set are not yet\ available; broader coverage is planned by the authors after peer review.\
\ \\ Source files were obtained from the\ Vejni/NMDetectiveAI\ GitHub repository (supplementary files\ NMDetectiveAI_MANE.bw.gz and NMDetectiveAI_MANE.bed.gz) and\ processed at UCSC: the bigWig is used as supplied; the BED was recolored with\ the diverging Okabe-Ito palette described above, rescored into the\ 0–1000 BED range, and augmented with a pre-rendered mouseover column\ before conversion to bigBed.\
\ \\ Note: the manuscript is currently a bioRxiv preprint and has not yet\ completed peer review. Predictions may be refreshed when the final version\ of the data is released.\
\ \Data Access
\\ The data underlying these tracks can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Marcell Veiner and Fran Supek for sharing the NMDetective-AI\ predictions ahead of publication, and to the wider Veiner et al.\ author group for developing the model.\
\ \References
\\ Veiner M, Toledano I, Palou-Márquez G, Lehner B, Supek F.\ \ Quantitative prediction of nonsense-mediated mRNA decay across human genes by\ genomic language model and large-scale mutational scanning.\ bioRxiv. 2026 Mar 26.\ doi: 10.64898/2026.03.24.714003.\ Supplementary prediction files at\ github.com/Vejni/NMDetectiveAI.\
\ genes 1 bigDataUrl /gbdb/hg38/nmd/nmdDetectAi.bb\ html nmdDetectiveAi\ itemRgb on\ longLabel NMDetective-AI: Per-stop-gain predictions for every codon (MANE Select only)\ mouseOverField mouseOver\ parent nmd off\ priority 1.8\ shortLabel NMDetective-AI variants\ track nmdDetectiveAiBed\ type bigBed 9 +\ visibility hide\ wgEncodeRegDnase DNase HS bed 3 + DNase I Hypersensitivity in 95 cell types from ENCODE 0 1.9 0 0 0 127 127 127 0 0 0Description
\\ These tracks contain the results of DNase I hypersensitivity experiments performed by the\ John Stamatoyannapoulos lab\ at the University of Washington from September 2007 to January 2011, as part of the\ ENCODE project first production phase.\ Colors were assigned to cell types based on similarity of signal.\
\ \\ Other views of this data (along with additional documentation) are available from the hg19\ ENCODE UW DNaseI HS track.\
\ \Display Conventions and Configuration
\\ This track is a composite annotation track containing multiple subtracks, one for each cell type.\ The display mode and filtering of each subtrack can be individually controlled. \ For more information about track configuration, see\ Configuring Multi-View Tracks.\
\ \Methods
\\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline (July 2014 specification), diagrammed here:\
\
\
Credit: Qian Alvin Qin, X. Liu lab\
\
\
Credit: Qian Alvin Qin, X. Liu lab\
\ Briefly, sequence files were aligned to the hg38 (GRCh38) genome assembly augmented with 'sponge'\ sequence (ref). Multi-mapped reads were removed, as were reads that aligned to 'sponge' or\ mitochondrial sequence. Results from all replicates were pooled, and further processed by\ the Hotspot program to call peaks as well as broader regions of activity ('hotspots'), and to\ create signal density graphs.\ Signal graphs were normalized so the average value genome-wide is 1.\
\\ The cell types were clustered into a binary tree, a rainbow was cast to the leaf nodes providing coloring based on similarity.\
\\
\
Credit: Chris Eisenhart, J. Kent lab \
\
(Please note there is different coloring on the ENCODE hg38\
Transcription track,\
Layered H3K4Me1 track,\
Layered H3K4Me3 track, and\
Layered H3K27Ac track,\
which match the coloring used in their previous versions lifted from the hg19 assembly).\
\
Credit: Chris Eisenhart, J. Kent lab \
Credits
\\ The processed data for this track were produced by UCSC. Credits for the primary data \ underlying this track are included in the\ ENCODE UW DNaseI HS track\ description.\
\ \References
\\ Miga KH, Eisenhart C, Kent WJ.\ \ Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false\ positive alignments.\ Nucleic Acids Res. 2015 Nov 16;43(20):e133.\ PMID: 26163063\
\\
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\
H, Vernot B et al.\
\
The accessible chromatin landscape of the human genome.\
Nature. 2012 Sep 6;489(7414):75-82.\
PMID: 22955617; PMC:
\ See also the references in the\ ENCODE UW DNaseI HS\ track.\
\ regulation 1 compositeTrack on\ controlledVocabulary cellType=wgEncodeCell\ dimensions dimA=cellType dimB=tissue dimC=cancer\ dragAndDrop subTracks\ filterComposite dimA dimB dimC\ group regulation\ html wgEncodeRegDnase\ longLabel DNase I Hypersensitivity in 95 cell types from ENCODE\ noInherit on\ priority 1.9\ shortLabel DNase HS\ showSubtrackColorOnUi on\ sortOrder view=+ subtrackColor=+ cellType=+ tissue=+\ subGroup1 view Views a_Peaks=Peaks b_Hot=Hotspots c_Signal=Signal\ subGroup2 cellType Cell_Type A549=A549 AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 AoAF=AoAF bone_marrow_MSC=bone_marrow_MSC BE2_C=BE2_C BJ=BJ CD20_RO01778=CD20+_RO01778 Caco-2=Caco-2 GM04503=GM04503 GM04504=GM04504 GM06990=GM06990 GM12865=GM12865 GM12878=GM12878 H7-hESC=H7-hESC HA-h=HA-h HA-sp=HA-sp HAEpiC=HAEpiC HAc=HAc HBMEC=HBMEC HBVSMC=HBVSMC HCF=HCF HCFaa=HCFaa HCM=HCM HCPEpiC=HCPEpiC HCT-116=HCT-116 HConF=HConF HEEpiC=HEEpiC HFF-Myc=HFF-Myc HFF=HFF HGF=HGF HIPEpiC=HIPEpiC HL-60=HL-60 HMEC=HMEC HMF=HMF HMVEC-LBl=HMVEC-LBl HMVEC-LLy=HMVEC-LLy HMVEC-dAd=HMVEC-dAd HMVEC-dBl-Ad=HMVEC-dBl-Ad HMVEC-dBl-Neo=HMVEC-dBl-Neo HMVEC-dLy-Ad=HMVEC-dLy-Ad HMVEC-dLy-Neo=HMVEC-dLy-Neo HMVEC-dNeo=HMVEC-dNeo HNPCEpiC=HNPCEpiC HPAF=HPAF HPF=HPF HPdLF=HPdLF HRCEpiC=HRCEpiC HRE=HRE HRGEC=HRGEC HRPEpiC=HRPEpiC HSMM=HSMM HSMMtube=HSMMtube HUVEC=HUVEC HVMF=HVMF HeLa-S3=HeLa-S3 HepG2=HepG2 Jurkat=Jurkat K562=K562 LHCN-M2=LHCN-M2 LNCaP=LNCaP M059J=M059J MCF-7=MCF-7 Monocytes_CD14_RO01746=Monocytes-CD14+_RO01746 NB4=NB4 NH-A=NH-A NHBE_RA=NHBE_RA NHDF-Ad=NHDF-Ad NHDF-neo=NHDF-neo NHEK=NHEK NHLF=NHLF NT2-D1=NT2-D1 PANC-1=PANC-1 PrEC=PrEC RPMI-7951=RPMI-7951 RPTEC=RPTEC SAEC=SAEC SK-N-MC=SK-N-MC SK-N-SH_RA=SK-N-SH_RA SKMC=SKMC T-47D=T-47D Th1=Th1 Th1_Wb54553204=Th1_Wb54553204 Th2=Th2 WERI-Rb-1=WERI-Rb-1 WI-38=WI-38\ subGroup3 treatment Treatment diffProtA_5d=diffProtA_5d diffProtA_14d=diffProtA_14d DIFF_4d=DIFF_4d n_a=n/a OHTAM_20nM_72hr=4OHTAM_20nM_72hr Estradiol_ctrl_0hr=Estradiol_ctrl_0hr Estradiol_100nM_1hr=Estradiol_100nM_1hr\ subGroup4 tissue Tissue blood=blood blood_vessel=blood_vessel bone_marrow=bone_marrow brain=brain breast=breast cervix=cervix colon=colon embryo=embryo esophagus=esophagus eye=eye heart=heart kidney=kidney liver=liver lung=lung muscle=muscle pancreas=pancreas periodontium=periodontium periodontium=periodontium placenta=placenta prostate=prostate skin=skin spinal_cord=spinal_cord testis=testis\ subGroup5 cancer Cancer cancer=cancer normal=normal unknown=unknown\ subGroup6 subtrackColor Similarity\ superTrack wgEncodeReg hide\ track wgEncodeRegDnase\ type bed 3 +\ knownGeneV47 GENCODE V47 bigGenePred knownGenePep knownGeneMrna GENCODE V47 3 1.9 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 47, October 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The v47 release was derived from the GTF file that contains annotations only on the main\ chromosomes. Statistics for this build and information on how they were generated can be found on\ the GENCODE site.
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is mostly based on the annotation type:
\- \
- MANE: MANE Select Plus Clinical transcripts.\ For non-MANE transcripts, the following conventions apply.\
- coding: protein coding transcripts, including polymorphic\ pseudogenes\
- non-coding: non-protein coding transcripts\
- pseudogene: pseudogene transcript annotations\
- problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain) \
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \ \Squishy-pack Display
\\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:
\ Protein_coding genes\- \
- MANE or Ensembl canonical\
- \
- 1st: MANE Select / Ensembl canonical \
- 2nd: MANE Plus Clinical \
\
- Coding biotypes\
- \
- 1st: protein_coding and protein_coding_LoF \
- 2nd: NMDs and NSDs \
- 3rd: retained intron and protein_coding_CDS_not_defined \
\
- Completeness\
- \
- 1st: full length \
- 2nd: CDS start/end not found \
\
- CARS score (only for coding transcripts) \
- Transcript genomic span and length (only for non-coding transcripts) \
- \
- Transcript biotype\
- \
- 1st: transcript biotype identical to gene biotype \
\
- Ensembl canonical \
- GENCODE basic \
- Transcript genomic span \
- Transcript length \
Methods
\\
The GENCODE v47 track was built from the GENCODE downloads file \
gencode.v47.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources\
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney. This version of the track was\ generated by Jonathan Casper.
\ \References
\ \\
Frankish A, Carbonell-Sala S, Diekhans M, Jungreis I, Loveland JE, Mudge JM, Sisu C, Wright JC,\
Arnan C, Barnes I et al.\
\
GENCODE: reference annotation for the human and mouse genomes in 2023.\
Nucleic Acids Res. 2023 Jan 6;51(D1):D942-D949.\
PMID: 36420896; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV47.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV47\ group genes\ html knownGeneV47\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V47\ maxItems 50000\ parent knownGeneArchive\ priority 1.9\ searchIndex name\ shortLabel GENCODE V47\ squishyPackField rank\ squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)\ squishyPackPoint 1\ track knownGeneV47\ type bigGenePred knownGenePep knownGeneMrna\ visibility pack\ wgEncodeRegDnaseHotspot Hotspots bed 3 + Hotspot5 hotspot calls on BWA. Dupe, sponge and mitochondria filtered 0 1.9 0 0 0 127 127 127 1 0 0 regulation 1 longLabel Hotspot5 hotspot calls on BWA. Dupe, sponge and mitochondria filtered\ minGrayLevel 2\ parent wgEncodeRegDnase\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel Hotspots\ spectrum on\ track wgEncodeRegDnaseHotspot\ view b_Hot\ visibility hide\ wgEncodeRegDnasePeak Peaks narrowPeak HotSpot5 peak calls on BWA. Dupe, sponge and mitochondria filtered 1 1.9 0 0 0 127 127 127 1 0 0 regulation 1 longLabel HotSpot5 peak calls on BWA. Dupe, sponge and mitochondria filtered\ minGrayLevel 2\ parent wgEncodeRegDnase\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel Peaks\ spectrum on\ track wgEncodeRegDnasePeak\ type narrowPeak\ view a_Peaks\ visibility dense\ wgEncodeRegDnaseSignal Signal bed 3 + HotSpot5 signal on BWA. Dupe, sponge and mitochondria filtered 0 1.9 0 0 0 127 127 127 0 0 0Description
\\ This track provides an integrated display of DNase hypersensitivity in multiple\ cell types using overlapping colored graphs of signal density with graph colors\ assigned to cell types based on similarity of signal. The track is based on\ results of experiments performed by the John Stamatoyannapoulos lab at the\ University of Washington from September 2007 to January 2011 as part of the\ ENCODE project first production phase.
\\ The signal graphs displayed here are also included in the comprehensive\ DNaseI HS track,\ which also provides peak and region calls and uses the same coloring based on\ similiarity of cell types (please note there is different coloring on the ENCODE hg38\ Transcription track,\ Layered H3K4Me1 track,\ Layered H3K4Me3 track, and\ Layered H3K27Ac track,\ which match the coloring used in their previous versions lifted from the hg19 assembly). \
\ \Methods
\\ Raw sequence data files were processed by the UCSC ENCODE DNase analysis pipeline\ described in the \ DNaseI HS\ track description.\ Signal graphs were normalized so the average value genome-wide is 1.\ Colors for the signal graphs were assigned by the UCSC BigWigCluster tool.\ \
\ The cell types were clustered into a binary tree, a rainbow was cast to the leaf nodes providing coloring based on similarity. \
\\
\
Credit: Chris Eisenhart, J. Kent lab \
\
\
\
\
Credit: Chris Eisenhart, J. Kent lab \
Credits
\\ The processed data for this track were generated at UCSC.\ Credits for the primary data underlying this track are included in the\ DNaseI HS\ track description.\
\ \References
\\ Miga KH, Eisenhart C, Kent WJ.\ \ Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false\ positive alignments.\ Nucleic Acids Res. 2015 Nov 16;43(20):e133.\ PMID: 26163063\
\\
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang\
H, Vernot B et al.\
\
The accessible chromatin landscape of the human genome.\
Nature. 2012 Sep 6;489(7414):75-82.\
PMID: 22955617; PMC:
\ See also the references in the\ DNaseI HS\ track.\
\ regulation 1 autoScale off\ longLabel HotSpot5 signal on BWA. Dupe, sponge and mitochondria filtered\ maxHeightPixels 100:32:16\ maxLimit 100000\ minLimit 0\ parent wgEncodeRegDnase\ shortLabel Signal\ track wgEncodeRegDnaseSignal\ view c_Signal\ viewLimits 0:100\ visibility hide\ windowingFunction mean+whiskers\ encRegTfbsClustered TF Clusters factorSource Transcription Factor ChIP-seq Clusters (340 factors, 129 cell types) from ENCODE 3 0 1.9 0 0 0 127 127 127 1 0 0 http://www.factorbook.org/mediawiki/index.php/$$Description
\\ This track shows regions of transcription factor binding derived from a large collection\ of ChIP-seq experiments performed by the ENCODE project between February 2011 and November 2018,\ spanning the first production phase of ENCODE ("ENCODE 2") through the second full production\ phase ("ENCODE 3").\
\\ Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to\ regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to \ specific short DNA sequences ('motifs');\ others bind to DNA indirectly through interactions with TFs containing a DNA binding domain.\ High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation\ followed by sequencing, or 'ChIP-seq') can be used to identify regions of\ TF binding genome-wide. These regions are commonly called ChIP-seq peaks.
\\ ENCODE TF ChIP-seq data were processed using the \ ENCODE Transcription Factor ChIP-seq Processing Pipeline to generate peaks of TF binding.\ Peaks from 1264 experiments (1256 in hg38) representing 338 transcription factors \ (340 in hg38) in 130 cell types (129 in hg38) are combined here into clusters to produce a \ summary display showing occupancy regions for each factor.\ The underlying ChIP-seq peak data are available from the\ ENCODE 3 TF ChIP Peaks tracks (\ hg19,\ hg38)
\ \Display Conventions
\\ A gray box encloses each peak cluster of transcription factor occupancy, with the\ darkness of the box being proportional to the maximum signal strength observed in any cell type\ contributing to the cluster. The HGNC gene name for the transcription factor is shown \ to the left of each cluster.
\
\ To the right of the cluster a configurable label can optionally display information about the\ cell types contributing to the cluster and how many cell types were assayed for the factor\ (count where detected / count where assayed).\ For brevity in the display, each cell type is abbreviated to a single letter.\ The darkness of the letter is proportional to the signal strength observed in the cell line. \ Abbreviations starting with capital letters designate\ ENCODE cell types initially identified for intensive study, \ while those starting with lowercase letters designate cell lines added later in the project.
\\ Click on a peak cluster to see more information about the TF/cell assays contributing to the\ cluster and the cell line abbreviation table.\
\ \Methods
\\ Peaks of transcription factor occupancy ("optimal peak set") from ENCODE ChIP-seq datasets\ were clustered using the UCSC hgBedsToBedExps tool. \ Scores were assigned to peaks by multiplying the input signal values by a normalization\ factor calculated as the ratio of the maximum score value (1000) to the signal value at one\ standard deviation from the mean, with values exceeding 1000 capped at 1000. This has the\ effect of distributing scores up to mean plus one 1 standard deviation across the score range,\ but assigning all above to the maximum score.\ The cluster score is the highest score for any peak contributing to the cluster.
\ \Data Access
\\ The raw data for the ENCODE3 TF Clusters track can be accessed from the\ \ Table Browser or combined with other datasets through the \ Data Integrator. This data is stored internally as a BED5+3 MySQL table with additional \ metadata tables. For automated analysis and download, the \ encRegTfbsClusteredWithCells.hg38.bed.gz track data file can be downloaded from \ our \ downloads server, which has 5 fields of BED data followed by a comma-separated list of cell types. \ The data can also be queried using the \ JSON API or the\ Public SQL server.
\ \Credits
\\ Thanks to the ENCODE Consortium, the ENCODE ChIP-seq production laboratories, and the\ ENCODE Data Coordination Center for generating and processing the TF ChIP-seq datasets used here.\ The ENCODE accession numbers of the constituent datasets are available from the peak details page.\ Special thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the \ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center) for providing the peak datasets, metadata,\ and guidance developing this track. Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\
\\ The integrative view presented here was developed by Jim Kent at UCSC.
\ \References
\ \ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585\
\ \ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153\
\\
Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee\
BT et al.\
\
ENCODE data at the ENCODE portal.\
Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32.\
PMID: 26527727; PMC:
\ Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J,\ Alexander R et al.\ \ Architecture of the human regulatory network derived from ENCODE data.\ Nature. 2012 Sep 6;489(7414):91-100.\ PMID: 22955619\
\\
Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y\
et al.\
\
Sequence features and chromatin structure around the genomic regions bound by 119 human\
transcription factors.\
Genome Res. 2012 Sep;22(9):1798-812.\
PMID: 22955990; PMC:
\
Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D et\
al.\
\
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE\
consortium.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6.\
PMID: 23203885; PMC:
Data Use Policy
\Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.
\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE\ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.\ regulation 1 dataVersion ENCODE 3 Nov 2018\ filterBy name:factor=AFF1,AGO1,AGO2,ARHGAP35,ARID1B,ARID2,ARID3A,ARNT,ASH1L,ASH2L,ATF2,ATF3,ATF4,ATF7,ATM,BACH1,BATF,BCL11A,BCL3,BCOR,BHLHE40,BMI1,BRCA1,BRD4,BRD9,C11orf30,CBFA2T2,CBFA2T3,CBFB,CBX1,CBX2,CBX3,CBX5,CBX8,CC2D1A,CCAR2,CDC5L,CEBPB,CHAMP1,CHD1,CHD4,CHD7,CLOCK,COPS2,CREB1,CREB3L1,CREBBP,CREM,CTBP1,CTCF,CUX1,DACH1,DEAF1,DNMT1,DPF2,E2F1,E2F4,E2F6,E2F7,E2F8,E4F1,EBF1,EED,EGR1,EHMT2,ELF1,ELF4,ELK1,EP300,EP400,ESR1,ESRRA,ETS1,ETV4,ETV6,EWSR1,EZH2,FIP1L1,FOS,FOSL1,FOSL2,FOXA1,FOXA2,FOXK2,FOXM1,FOXP1,FUS,GABPA,GABPB1,GATA1,GATA2,GATA3,GATA4,GATAD2A,GATAD2B,GMEB1,HCFC1,HDAC1,HDAC2,HDAC3,HDAC6,HES1,HMBOX1,HNF1A,HNF4A,HNF4G,HNRNPH1,HNRNPK,HNRNPL,HNRNPLL,HNRNPUL1,HSF1,IKZF1,IKZF2,IRF1,IRF2,IRF3,IRF4,IRF5,JUN,JUNB,JUND,KAT2A,KAT2B,KAT8,KDM1A,KDM4A,KDM4B,KDM5A,KDM5B,KLF16,KLF5,L3MBTL2,LCORL,LEF1,MAFF,MAFK,MAX,MBD2,MCM2,MCM3,MCM5,MCM7,MEF2A,MEF2B,MEF2C,MEIS2,MGA,MIER1,MITF,MLLT1,MNT,MTA1,MTA2,MTA3,MXI1,MYB,MYBL2,MYC,MYNN,NANOG,NBN,NCOA1,NCOA2,NCOA3,NCOA4,NCOA6,NCOR1,NEUROD1,NFATC1,NFATC3,NFE2,NFE2L2,NFIB,NFIC,NFRKB,NFXL1,NFYA,NFYB,NR0B1,NR2C1,NR2C2,NR2F1,NR2F2,NR2F6,NR3C1,NRF1,NUFIP1,PAX5,PAX8,PBX3,PCBP1,PCBP2,PHB2,PHF20,PHF21A,PHF8,PKNOX1,PLRG1,PML,POLR2A,POLR2G,POU2F2,PRDM10,PRPF4,PTBP1,PYGO2,RAD21,RAD51,RB1,RBBP5,RBFOX2,RBM14,RBM15,RBM17,RBM22,RBM25,RBM34,RBM39,RCOR1,RELB,REST,RFX1,RFX5,RLF,RNF2,RUNX1,RUNX3,RXRA,SAFB,SAFB2,SAP30,SETDB1,SIN3A,SIN3B,SIRT6,SIX4,SIX5,SKI,SKIL,SMAD1,SMAD2,SMAD5,SMARCA4,SMARCA5,SMARCB1,SMARCC2,SMARCE1,SMC3,SNRNP70,SOX13,SOX6,SP1,SPI1,SREBF1,SREBF2,SRF,SRSF4,SRSF7,SRSF9,STAT1,STAT2,STAT3,STAT5A,SUPT20H,SUZ12,TAF1,TAF15,TAF7,TAF9B,TAL1,TBL1XR1,TBP,TBX21,TBX3,TCF12,TCF7,TCF7L2,TEAD4,TFAP4,THAP1,THRA,TRIM22,TRIM24,TRIM28,TRIP13,U2AF1,U2AF2,UBTF,USF1,USF2,WHSC1,WRNIP1,XRCC3,XRCC5,YY1,ZBED1,ZBTB1,ZBTB11,ZBTB2,ZBTB33,ZBTB40,ZBTB5,ZBTB7A,ZBTB7B,ZBTB8A,ZEB1,ZEB2,ZFP91,ZFX,ZHX1,ZHX2,ZKSCAN1,ZMIZ1,ZMYM3,ZNF143,ZNF184,ZNF207,ZNF217,ZNF24,ZNF263,ZNF274,ZNF280A,ZNF282,ZNF316,ZNF318,ZNF384,ZNF407,ZNF444,ZNF507,ZNF512B,ZNF574,ZNF579,ZNF592,ZNF639,ZNF687,ZNF8,ZNF830,ZSCAN29,ZZZ3\ idInUrlSql select value from factorbookGeneAlias where name='%s'\ inputTableFieldDisplay cellType factor experiment lab\ inputTableFieldUrls experiment="https://www.encodeproject.org/experiments/$$"\ inputTrackTable encRegTfbsClusteredInputs\ longLabel Transcription Factor ChIP-seq Clusters (340 factors, 129 cell types) from ENCODE 3\ maxWindowToDraw 10000000\ parent wgEncodeReg\ priority 1.90\ shortLabel TF Clusters\ sourceTable encRegTfbsClusteredSources\ track encRegTfbsClustered\ type factorSource\ url http://www.factorbook.org/mediawiki/index.php/$$\ urlLabel Factorbook Link:\ useScore 1\ visibility hide\ encTfChipPk TF ChIP narrowPeak Transcription Factor ChIP-seq Peaks (340 factors in 129 cell types) from ENCODE 3 0 1.91 0 0 0 127 127 127 0 0 0Description
\\ This track represents a comprehensive set of human transcription factor binding sites based on \ ChIP-seq experiments generated by production groups in the ENCODE Consortium between \ February 2011 and November 2018.
\\ Transcription factors (TFs) are proteins that bind to DNA and interact with RNA polymerases to\ regulate gene expression. Some TFs contain a DNA binding domain and can bind directly to \ specific short DNA sequences ('motifs');\ others bind to DNA indirectly through interactions with TFs containing a DNA binding domain.\ High-throughput antibody capture and sequencing methods (e.g. chromatin immunoprecipitation\ followed by sequencing, or 'ChIP-seq') can be used to identify regions of\ TF binding genome-wide. These regions are commonly called ChIP-seq peaks.
\ \ The related\ Transcription Factor ChIP-seq Clusters tracks \ (hg19,\ hg38)\ provide summary views of this data.\ \\ \
Display and File Conventions and Configuration
\\ The display for this track shows site location with the point-source of the peak marked with a \ colored vertical bar and the level of enrichment at the site indicated by the darkness of the item.\ The subtracks are colored by UCSC ENCODE 2 cell type color conventions on the hg19 assembly, \ and by similarity of cell types in DNaseI hypersensitivity assays (as in the\ DNase Signal)\ track in the hg38 assembly.
\ \ The display can be filtered to higher valued items, using the \ Score range: configuration item.\ The score values were computed at UCSC based on signal values assigned by the ENCODE\ pipeline.\ The input signal values were multiplied by a normalization factor calculated as the ratio\ of the maximum score value (1000) to the signal value at 1 standard deviation from the mean,\ with values exceeding 1000 capped at 1000. This has the effect of distributing scores up to \ mean + 1std across the score range, but assigning all above to the maximum score.\ \
Methods
\\ The ChIP-seq peaks in this track were\ generated by the\ the ENCODE Transcription Factor ChIP-seq Processing Pipeline.\ Methods documentation and full metadata for each track can be found at the \ ENCODE project portal, using\ The ENCODE file accession (ENCFF*) listed in the track label.\
\ \Credits
\\ Thanks to the ENCODE Consortium, the ENCODE ChIP-seq production laboratories, and the\ ENCODE Data Coordination Center for generating and processing the datasets used here.\ Special thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI, at the \ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center) for providing the peak datasets, metadata,\ and guidance developing this track. Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\
\ \References
\ \ENCODE Project Consortium.\ \ A user's guide to the encyclopedia of DNA elements (ENCODE).\ PLoS Biol. 2011 Apr;9(4):e1001046. PMID: 21526222; PMCID: PMC3079585\
\ \ENCODE Project Consortium.\ \ An integrated encyclopedia of DNA elements in the human genome.\ Nature. 2012 Sep 6;489(7414):57-74. PMID: 22955616; PMCID: PMC3439153\
\\
Sloan CA, Chan ET, Davidson JM, Malladi VS, Strattan JS, Hitz BC, Gabdank I, Narayanan AK, Ho M, Lee\
BT et al.\
\
ENCODE data at the ENCODE portal.\
Nucleic Acids Res. 2016 Jan 4;44(D1):D726-32.\
PMID: 26527727; PMC:
\ Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J,\ Alexander R et al.\ \ Architecture of the human regulatory network derived from ENCODE data.\ Nature. 2012 Sep 6;489(7414):91-100.\ PMID: 22955619\
\\
Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, Greven MC, Pierce BG, Dong X, Kundaje A, Cheng Y\
et al.\
\
Sequence features and chromatin structure around the genomic regions bound by 119 human\
transcription factors.\
Genome Res. 2012 Sep;22(9):1798-812.\
PMID: 22955990; PMC:
\
Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D et\
al.\
\
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE\
consortium.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6.\
PMID: 23203885; PMC:
Data Use Policy
\Users may freely download, analyze and publish results based on any ENCODE data without \ restrictions.\ Researchers using unpublished ENCODE data are encouraged to contact the data producers to discuss possible coordinated publications; however, this is optional.
\\ Users of ENCODE datasets are requested to cite the ENCODE Consortium and ENCODE \ production laboratory(s) that generated the datasets used, as described in\ Citing ENCODE.
\ \ regulation 1 compositeTrack on\ darkerLabels on\ dataVersion ENCODE 3 Nov 2018\ dimensions dimX=cellType dimY=factor\ dragAndDrop subTracks\ group regulation\ longLabel Transcription Factor ChIP-seq Peaks (340 factors in 129 cell types) from ENCODE 3\ parent wgEncodeReg\ priority 1.91\ scoreFilter 0\ scoreFilterLimits 0:1000\ shortLabel TF ChIP\ sortOrder cellType=+ factor=+\ subGroup1 cellType Cell_Type X22Rv1=22Rv1 A549=A549 A673=A673 AG04449=AG04449 AG04450=AG04450 AG09309=AG09309 AG09319=AG09319 AG10803=AG10803 BE2C=BE2C BJ=BJ B_cell=B_cell C4-2B=C4-2B CD14-positive_monocyte=CD14-positive_monocyte Caco-2=Caco-2 DOHH2=DOHH2 GM06990=GM06990 GM08714=GM08714 GM10266=GM10266 GM12864=GM12864 GM12865=GM12865 GM12873=GM12873 GM12874=GM12874 GM12878=GM12878 GM12891=GM12891 GM12892=GM12892 GM13977=GM13977 GM20000=GM20000 GM23248=GM23248 GM23338=GM23338 H1-hESC=H1-hESC H54=H54 HCT116=HCT116 HEK293=HEK293 HEK293T=HEK293T HFF-Myc=HFF-Myc HL-60=HL-60 HeLa-S3=HeLa-S3 HepG2=HepG2 IMR-90=IMR-90 Ishikawa=Ishikawa K562=K562 KMS-11=KMS-11 LNCAP=LNCAP LNCaP_clone_FGC=LNCaP_clone_FGC Loucy=Loucy MCF-7=MCF-7 MCF_10A=MCF_10A MM_1S=MM.1S NB4=NB4 NCI-H929=NCI-H929 NT2_D1=NT2/D1 OCI-LY1=OCI-LY1 OCI-LY3=OCI-LY3 OCI-LY7=OCI-LY7 PC-3=PC-3 PC-9=PC-9 PFSK-1=PFSK-1 Panc1=Panc1 Parathyroid_adenoma=Parathyroid_adenoma Peyers_patch=Peyer's_patch RWPE1=RWPE1 RWPE2=RWPE2 Raji=Raji SH-SY5Y=SH-SY5Y SK-N-MC=SK-N-MC SK-N-SH=SK-N-SH SU-DHL-6=SU-DHL-6 T47D=T47D VCaP=VCaP WERI-Rb-1=WERI-Rb-1 WI38=WI38 adrenal_gland=adrenal_gland ascending_aorta=ascending_aorta astrocyte=astrocyte astrocyte_of_the_cerebellum=astrocyte_of_the_cerebellum astrocyte_of_the_spinal_cord=astrocyte_of_the_spinal_cord bipolar_neuron=bipolar_neuron body_of_pancreas=body_of_pancreas brain_microvascular_endothelial_cell=brain_microvascular_endothelial_cell breast_epithelium=breast_epithelium cardiac_fibroblast=cardiac_fibroblast cardiac_muscle_cell=cardiac_muscle_cell choroid_plexus_epithelial_cell=choroid_plexus_epithelial_cell endothelial_cell_of_umbilical_vein=endothelial_cell_of_umbilical_vein epithelial_cell_of_esophagus=epithelial_cell_of_esophagus epithelial_cell_of_prostate=epithelial_cell_of_prostate erythroblast=erythroblast esophagus_muscularis_mucosa=esophagus_muscularis_mucosa esophagus_squamous_epithelium=esophagus_squamous_epithelium fibroblast_of_lung=fibroblast_of_lung fibroblast_of_mammary_gland=fibroblast_of_mammary_gland fibroblast_of_pulmonary_artery=fibroblast_of_pulmonary_artery fibroblast_of_the_aortic_adventitia=fibroblast_of_the_aortic_adventitia fibroblast_of_villous_mesenchyme=fibroblast_of_villous_mesenchyme foreskin_fibroblast=foreskin_fibroblast foreskin_keratinocyte=foreskin_keratinocyte gastrocnemius_medialis=gastrocnemius_medialis gastroesophageal_sphincter=gastroesophageal_sphincter heart_left_ventricle=heart_left_ventricle hepatocyte=hepatocyte keratinocyte=keratinocyte kidney_epithelial_cell=kidney_epithelial_cell liver=liver lower_leg_skin=lower_leg_skin mammary_epithelial_cell=mammary_epithelial_cell medulloblastoma=medulloblastoma myotube=myotube neural_cell=neural_cell neural_progenitor_cell=neural_progenitor_cell neutrophil=neutrophil omental_fat_pad=omental_fat_pad ovary=ovary prostate_gland=prostate_gland retinal_pigment_epithelial_cell=retinal_pigment_epithelial_cell right_lobe_of_liver=right_lobe_of_liver sigmoid_colon=sigmoid_colon smooth_muscle_cell=smooth_muscle_cell spleen=spleen stomach=stomach subcutaneous_adipose_tissue=subcutaneous_adipose_tissue suprapubic_skin=suprapubic_skin testis=testis thyroid_gland=thyroid_gland tibial_artery=tibial_artery tibial_nerve=tibial_nerve transverse_colon=transverse_colon upper_lobe_of_left_lung=upper_lobe_of_left_lung uterus=uterus vagina=vagina\ subGroup2 factor Factor AFF1=AFF1 AGO1=AGO1 AGO2=AGO2 ARHGAP35=ARHGAP35 ARID1B=ARID1B ARID2=ARID2 ARID3A=ARID3A ARNT=ARNT ASH1L=ASH1L ASH2L=ASH2L ATF2=ATF2 ATF3=ATF3 ATF4=ATF4 ATF7=ATF7 ATM=ATM BACH1=BACH1 BATF=BATF BCL11A=BCL11A BCL3=BCL3 BCOR=BCOR BHLHE40=BHLHE40 BMI1=BMI1 BRCA1=BRCA1 BRD4=BRD4 BRD9=BRD9 C11orf30=C11orf30 CBFA2T2=CBFA2T2 CBFA2T3=CBFA2T3 CBFB=CBFB CBX1=CBX1 CBX2=CBX2 CBX3=CBX3 CBX5=CBX5 CBX8=CBX8 CC2D1A=CC2D1A CCAR2=CCAR2 CDC5L=CDC5L CEBPB=CEBPB CHAMP1=CHAMP1 CHD1=CHD1 CHD4=CHD4 CHD7=CHD7 CLOCK=CLOCK COPS2=COPS2 CREB1=CREB1 CREB3L1=CREB3L1 CREBBP=CREBBP CREM=CREM CTBP1=CTBP1 CTCF=CTCF CUX1=CUX1 DACH1=DACH1 DEAF1=DEAF1 DNMT1=DNMT1 DPF2=DPF2 E2F1=E2F1 E2F4=E2F4 E2F6=E2F6 E2F7=E2F7 E2F8=E2F8 E4F1=E4F1 EBF1=EBF1 EED=EED EGR1=EGR1 EHMT2=EHMT2 ELF1=ELF1 ELF4=ELF4 ELK1=ELK1 EP300=EP300 EP400=EP400 ESR1=ESR1 ESRRA=ESRRA ETS1=ETS1 ETV4=ETV4 ETV6=ETV6 EWSR1=EWSR1 EZH2=EZH2 FIP1L1=FIP1L1 FOS=FOS FOSL1=FOSL1 FOSL2=FOSL2 FOXA1=FOXA1 FOXA2=FOXA2 FOXK2=FOXK2 FOXM1=FOXM1 FOXP1=FOXP1 FUS=FUS GABPA=GABPA GABPB1=GABPB1 GATA1=GATA1 GATA2=GATA2 GATA3=GATA3 GATA4=GATA4 GATAD2A=GATAD2A GATAD2B=GATAD2B GMEB1=GMEB1 HCFC1=HCFC1 HDAC1=HDAC1 HDAC2=HDAC2 HDAC3=HDAC3 HDAC6=HDAC6 HES1=HES1 HMBOX1=HMBOX1 HNF1A=HNF1A HNF4A=HNF4A HNF4G=HNF4G HNRNPH1=HNRNPH1 HNRNPK=HNRNPK HNRNPL=HNRNPL HNRNPLL=HNRNPLL HNRNPUL1=HNRNPUL1 HSF1=HSF1 IKZF1=IKZF1 IKZF2=IKZF2 IRF1=IRF1 IRF2=IRF2 IRF3=IRF3 IRF4=IRF4 IRF5=IRF5 JUN=JUN JUNB=JUNB JUND=JUND KAT2A=KAT2A KAT2B=KAT2B KAT8=KAT8 KDM1A=KDM1A KDM4A=KDM4A KDM4B=KDM4B KDM5A=KDM5A KDM5B=KDM5B KLF16=KLF16 KLF5=KLF5 L3MBTL2=L3MBTL2 LCORL=LCORL LEF1=LEF1 MAFF=MAFF MAFK=MAFK MAX=MAX MBD2=MBD2 MCM2=MCM2 MCM3=MCM3 MCM5=MCM5 MCM7=MCM7 MEF2A=MEF2A MEF2B=MEF2B MEF2C=MEF2C MEIS2=MEIS2 MGA=MGA MIER1=MIER1 MITF=MITF MLLT1=MLLT1 MNT=MNT MTA1=MTA1 MTA2=MTA2 MTA3=MTA3 MXI1=MXI1 MYB=MYB MYBL2=MYBL2 MYC=MYC MYNN=MYNN NANOG=NANOG NBN=NBN NCOA1=NCOA1 NCOA2=NCOA2 NCOA3=NCOA3 NCOA4=NCOA4 NCOA6=NCOA6 NCOR1=NCOR1 NEUROD1=NEUROD1 NFATC1=NFATC1 NFATC3=NFATC3 NFE2=NFE2 NFE2L2=NFE2L2 NFIB=NFIB NFIC=NFIC NFRKB=NFRKB NFXL1=NFXL1 NFYA=NFYA NFYB=NFYB NR0B1=NR0B1 NR2C1=NR2C1 NR2C2=NR2C2 NR2F1=NR2F1 NR2F2=NR2F2 NR2F6=NR2F6 NR3C1=NR3C1 NRF1=NRF1 NUFIP1=NUFIP1 PAX5=PAX5 PAX8=PAX8 PBX3=PBX3 PCBP1=PCBP1 PCBP2=PCBP2 PHB2=PHB2 PHF20=PHF20 PHF21A=PHF21A PHF8=PHF8 PKNOX1=PKNOX1 PLRG1=PLRG1 PML=PML POLR2A=POLR2A POLR2G=POLR2G POU2F2=POU2F2 PRDM10=PRDM10 PRPF4=PRPF4 PTBP1=PTBP1 PYGO2=PYGO2 RAD21=RAD21 RAD51=RAD51 RB1=RB1 RBBP5=RBBP5 RBFOX2=RBFOX2 RBM14=RBM14 RBM15=RBM15 RBM17=RBM17 RBM22=RBM22 RBM25=RBM25 RBM34=RBM34 RBM39=RBM39 RCOR1=RCOR1 RELB=RELB REST=REST RFX1=RFX1 RFX5=RFX5 RLF=RLF RNF2=RNF2 RUNX1=RUNX1 RUNX3=RUNX3 RXRA=RXRA SAFB=SAFB SAFB2=SAFB2 SAP30=SAP30 SETDB1=SETDB1 SIN3A=SIN3A SIN3B=SIN3B SIRT6=SIRT6 SIX4=SIX4 SIX5=SIX5 SKI=SKI SKIL=SKIL SMAD1=SMAD1 SMAD2=SMAD2 SMAD5=SMAD5 SMARCA4=SMARCA4 SMARCA5=SMARCA5 SMARCB1=SMARCB1 SMARCC2=SMARCC2 SMARCE1=SMARCE1 SMC3=SMC3 SNRNP70=SNRNP70 SOX13=SOX13 SOX6=SOX6 SP1=SP1 SPI1=SPI1 SREBF1=SREBF1 SREBF2=SREBF2 SRF=SRF SRSF4=SRSF4 SRSF7=SRSF7 SRSF9=SRSF9 STAT1=STAT1 STAT2=STAT2 STAT3=STAT3 STAT5A=STAT5A SUPT20H=SUPT20H SUZ12=SUZ12 TAF1=TAF1 TAF15=TAF15 TAF7=TAF7 TAF9B=TAF9B TAL1=TAL1 TBL1XR1=TBL1XR1 TBP=TBP TBX21=TBX21 TBX3=TBX3 TCF12=TCF12 TCF7=TCF7 TCF7L2=TCF7L2 TEAD4=TEAD4 TFAP4=TFAP4 THAP1=THAP1 THRA=THRA TRIM22=TRIM22 TRIM24=TRIM24 TRIM28=TRIM28 TRIP13=TRIP13 U2AF1=U2AF1 U2AF2=U2AF2 UBTF=UBTF USF1=USF1 USF2=USF2 WHSC1=WHSC1 WRNIP1=WRNIP1 XRCC3=XRCC3 XRCC5=XRCC5 YY1=YY1 ZBED1=ZBED1 ZBTB1=ZBTB1 ZBTB11=ZBTB11 ZBTB2=ZBTB2 ZBTB33=ZBTB33 ZBTB40=ZBTB40 ZBTB5=ZBTB5 ZBTB7A=ZBTB7A ZBTB7B=ZBTB7B ZBTB8A=ZBTB8A ZEB1=ZEB1 ZEB2=ZEB2 ZFP91=ZFP91 ZFX=ZFX ZHX1=ZHX1 ZHX2=ZHX2 ZKSCAN1=ZKSCAN1 ZMIZ1=ZMIZ1 ZMYM3=ZMYM3 ZNF143=ZNF143 ZNF184=ZNF184 ZNF207=ZNF207 ZNF217=ZNF217 ZNF24=ZNF24 ZNF263=ZNF263 ZNF274=ZNF274 ZNF280A=ZNF280A ZNF282=ZNF282 ZNF316=ZNF316 ZNF318=ZNF318 ZNF384=ZNF384 ZNF407=ZNF407 ZNF444=ZNF444 ZNF507=ZNF507 ZNF512B=ZNF512B ZNF574=ZNF574 ZNF579=ZNF579 ZNF592=ZNF592 ZNF639=ZNF639 ZNF687=ZNF687 ZNF8=ZNF8 ZNF830=ZNF830 ZSCAN29=ZSCAN29 ZZZ3=ZZZ3\ track encTfChipPk\ type narrowPeak\ visibility hide\ netCriGriChoV2 Chinese hamster Net netAlign criGriChoV2 chainCriGriChoV2 Chinese hamster (Jun. 2017 (CHOK1S_HZDv1/criGriChoV2)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chinese hamster (Jun. 2017 (CHOK1S_HZDv1/criGriChoV2)) Alignment Net\ otherDb criGriChoV2\ parent placentalChainNetViewnet off\ shortLabel Chinese hamster Net\ subGroups view=net species=s004b clade=c00\ track netCriGriChoV2\ type netAlign criGriChoV2 chainCriGriChoV2\ netMonDom5 Opossum Net netAlign monDom5 chainMonDom5 Opossum (Oct. 2006 (Broad/monDom5)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Opossum (Oct. 2006 (Broad/monDom5)) Alignment Net\ otherDb monDom5\ parent vertebrateChainNetViewnet on\ shortLabel Opossum Net\ subGroups view=net species=s003 clade=c00\ track netMonDom5\ type netAlign monDom5 chainMonDom5\ netPanTro6 Chimp Net netAlign panTro6 chainPanTro6 Chimp (Jan. 2018 (Clint_PTRv2/panTro6)) Alignment Net 1 2 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chimp (Jan. 2018 (Clint_PTRv2/panTro6)) Alignment Net\ otherDb panTro6\ parent primateChainNetViewnet off\ shortLabel Chimp Net\ subGroups view=net species=s0025 clade=c00\ track netPanTro6\ type netAlign panTro6 chainPanTro6\ lrSv1kgOnt 1KG ONT 1019 SVs bigBed 9 + Structural Variants from 1,019 Diverse Humans (Vienna ONT, Schloissnig et al. 2025) 0 2 0 0 0 127 127 127 0 0 0Description
\\ This track shows structural variants (SVs) identified by Oxford Nanopore long-read\ sequencing of 1,019 individuals from the 1000 Genomes Project, representing 26\ populations across 5 continental regions: Africa (275 samples), East Asia (192),\ South Asia (199), Europe (189), and Americas (164). Median sequencing coverage\ was 16.9x per sample with a median N50 read length of 20.3 kb.\
\\ SVs were discovered using the SAGA framework (SV Analysis by Graph Augmentation)\ and annotated with SVAN, which classifies insertions and deletions by their\ mechanism of origin. The full release is native to the T2T-CHM13 assembly\ (hs1) and contains 161,332 annotated SVs (75,324 insertions, 66,192 deletions,\ and 19,816 complex rearrangements). For GRCh38 (hg38), coordinates were converted\ using liftOver and 148,375 records mapped successfully (73,298 insertions,\ 58,637 deletions, and 16,440 complex rearrangements).\
\\ The 1,019 samples sequenced here are distinct from those in the\ 1KG ONT 100 track (Gustafson et al. 2024);\ the two releases were produced by separate consortia (Vienna and the 1000 Genomes\ ONT Sequencing Consortium, respectively) and there is no sample overlap between\ the two.\
\ \Display Conventions and Configuration
\\ Items are colored by SV class:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Complex (CPX) - orange \
\ Filters are available for SV type, insertion/deletion type, transposon family,\ and SV length. For insertions, the item is placed at the insertion site with a\ width of 1 bp; for deletions, the item spans the deleted region.\
\\ The detail page for each item shows SVAN annotation fields including:\
- \
- Insertion/Deletion Type: solo (single mobile element), partnered\ (with transduction), orphan (transduction only), VNTR, PSD (processed pseudogene),\ NUMT (nuclear mitochondrial insertion), DUP (tandem duplication),\ DUP_INTERSPERSED, INV_DUP (inverted duplication), COMPLEX_DUP, or chimera \
- Transposon Family: Alu, L1, SVA, HERVK, or LTR5_Hs \
- Percent Resolved: fraction of inserted sequence resolved by assembly \
- TSD Length: target site duplication length \
- Poly-A Length: poly-A tail length \
- Conformation: structural conformation of the insertion\ (e.g. FOR+POLYA, Hexamer+Alu-like+VNTR+SINE-R+POLYA) \
- Source Coordinates: genomic location of the source element (for transductions) \
Methods
\\ Schloissnig et al. 2025 generated intermediate-coverage Oxford Nanopore\ long-read sequencing of 1,019 samples from the 1000 Genomes Project on\ PromethION 48 instruments with R9.4.1 (FLO-PRO002) flow cells (SQK-LSK110\ libraries, 24-h runs with flow-cell wash and reload). SVs were discovered\ with the SAGA framework (SV Analysis by Graph Augmentation), which combines\ linear-reference callers (Sniffles and DELLY, run against both GRCh38 and\ T2T-CHM13), graph-aware discovery with SVarp (local long-read assembly of\ SV-supporting graph-aligned reads) and graph-based joint genotyping with\ Giggles across a pangenome graph. Insertions and deletions were then\ annotated with \ SVAN v1.3, which classifies SVs by mechanism of origin. The release\ contains 161,332 SVAN-annotated SVs: 75,324 insertions, 66,192 deletions\ and 19,816 complex rearrangements. The original VCF is on T2T-CHM13 contig\ coordinates; for the hg38 version of this track, SVs were lifted with\ liftOver (148,375 of 161,332 records mapped), while the hs1 version uses\ the native coordinates.\
\\ The SVAN-annotated unphased VCF (final-vcf.unphased.SVAN_1.3.vcf.gz)\ was downloaded from\ \ the IGSR 1KG_ONT_VIENNA v1.1 SVAN-annotation directory; allele counts\ were added from the companion shapeit5-phased-callset\ (shapeit5-phased-callset_final-vcf.phased.vcf.gz) in the same\ release tree.\
\\ The step-by-step build commands (download, liftOver, format conversion,\ bigBed build) are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ Source data is available from the\ 1000 Genomes ONT Vienna data collection at IGSR.\
\ \Credits
\\ Thanks to the 1000 Genomes ONT Vienna consortium for making their structural\ variant calls and SVAN annotations publicly available.\
\ \References
\ \\
Schloissnig S, Pani S, Ebler J, Hain C, Tsapalou V, Söylev A, Hüther P, Ashraf H, Prodanov T,\
Asparuhova M et al.\
\
Structural variation in 1,019 diverse humans based on long-read sequencing.\
Nature. 2025 Aug;644(8076):442-452.\
PMID: 40702182; PMC:
SV len: $svLen
Ins len: $insLen
Type: $insType
Family: $family
AC: $AC
AF: $alleleFreq\ parent longReadVariants\ priority 2\ shortLabel 1KG ONT 1019 SVs\ skipEmptyFields on\ track lrSv1kgOnt\ type bigBed 9 +\ visibility hide\ phyloP447way 447 phyloP SSREV wig -20 8.123 447 mammals / 233 primates Basewise Conservation by PhyloP SSREV model 2 2 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ longLabel 447 mammals / 233 primates Basewise Conservation by PhyloP SSREV model\ maxHeightPixels 100:50:11\ noInherit on\ parent cons447wayViewphyloP\ priority 2\ shortLabel 447 phyloP SSREV\ spanList 1\ subGroups view=phyloP\ track phyloP447way\ type wig -20 8.123\ viewLimits -4.5:7.5\ windowingFunction mean\ encTfChipPkENCFF093ZAB A549 BCL3 narrowPeak Transcription Factor ChIP-seq Peaks of BCL3 in A549 from ENCODE 3 (ENCFF093ZAB) 0 2 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of BCL3 in A549 from ENCODE 3 (ENCFF093ZAB)\ parent encTfChipPk off\ shortLabel A549 BCL3\ subGroups cellType=A549 factor=BCL3\ track encTfChipPkENCFF093ZAB\ wgEncodeRegDnaseUwA549Peak A549 Pk narrowPeak A549 lung adenocarcinoma cell line DNaseI Peaks from ENCODE 1 2 254 93 85 254 174 170 1 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel A549 Pk\ subGroups view=a_Peaks cellType=A549 treatment=n_a tissue=lung cancer=cancer\ track wgEncodeRegDnaseUwA549Peak\ wgEncodeRegDnaseUwA549Wig A549 Sg bigWig 0 30091.1 A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE 0 2 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.00887\ shortLabel A549 Sg\ subGroups cellType=A549 treatment=n_a tissue=lung cancer=cancer\ table wgEncodeRegDnaseUwA549Signal\ track wgEncodeRegDnaseUwA549Wig\ type bigWig 0 30091.1\ cloneEndABC11 ABC11 bed 12 Agencourt fosmid library 11 0 2 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 11\ parent cloneEndSuper off\ priority 2\ shortLabel ABC11\ subGroups source=agencourt\ track cloneEndABC11\ type bed 12\ visibility hide\ ACC ACC bigLolly 12 + Adrenocortical carcinoma 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/ACC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Adrenocortical carcinoma\ parent gdcCancer off\ priority 2\ shortLabel ACC\ track ACC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ gtexCovAdiposeVisceralOmentum Adip Visc Om bigWig Adipose Visceral Omentum - GTEX-14BMU-0626-SM-73KZ6 0 2 238 154 0 246 204 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14BMU-0626-SM-73KZ6.Adipose_Visceral_Omentum.RNAseq.bw\ color 238,154,0\ longLabel Adipose Visceral Omentum - GTEX-14BMU-0626-SM-73KZ6\ parent gtexCov\ shortLabel Adip Visc Om\ track gtexCovAdiposeVisceralOmentum\ wgEncodeReg4TxnAdiposeMinus Adipose - bigWig Avg. - strand total RNA-seq level of 9 adipose experiments (tissues and primary cells only) 0 2 255 119 39 255 187 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/adiposeMinus.bw\ color 255,119,39\ longLabel Avg. - strand total RNA-seq level of 9 adipose experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 2\ shortLabel Adipose -\ track wgEncodeReg4TxnAdiposeMinus\ type bigWig\ lincRNAsCTAdrenal Adrenal bed 5 + lincRNAs from adrenal 1 2 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from adrenal\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Adrenal\ subGroups view=lincRNAsRefseqExp tissueType=adrenal\ track lincRNAsCTAdrenal\ genetiSureCytoCgh4x180 Agilent GenetiSure Cyto CGH 4x180K bigBed 4 Agilent GenetiSure Cyto CGH 4x180K 085589 20200302 3 2 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/snpCnvArrays/agilent/hg38.GenetiSure_Cyto_CGH_Microarray_4x180K_085589_D_BED_20200302.bb\ longLabel Agilent GenetiSure Cyto CGH 4x180K 085589 20200302\ parent genotypeArrays on\ priority 2\ shortLabel Agilent GenetiSure Cyto CGH 4x180K\ track genetiSureCytoCgh4x180\ type bigBed 4\ visibility pack\ allofus AllOfUs v7 245k WGS vcfTabix SNV Frequencies: AllOfUs v7 - 245k WGS, local-ancestry-stratified, AC>=20 0 2 0 0 0 127 127 127 0 0 0
Description
\\ The All of Us Research Program is a\ large-scale biomedical research initiative launched by the U.S. National Institutes of Health (NIH)\ in 2018. Its goal is to build one of the most diverse health databases, enrolling over one\ million participants who reflect the full diversity of the United States, including groups that\ have been historically underrepresented in biomedical research. Participants contribute health\ surveys, electronic health records (EHR), physical measurements, and biosamples for genomic\ analysis.\
\ \\ This track shows allele frequencies from the v7 short-read whole-genome sequencing (srWGS)\ release of 245,388 participants. A minimum allele count filter of ≥20 was applied.\ Frequencies are provided both overall and broken down by genetic ancestry using local ancestry\ inference: European (EUR), East Asian (EAS), African (AFR), Indigenous American (AMR),\ Oceanian (OCE), and South Asian (SAS). Some variants are flagged with an "NW" tag\ (not in window) when the variant was not within a genomic window covered by the ancestry\ reference files; in these cases the closest available position was used for ancestry assignment.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ Variant data and individual-level data are accessible through the\ All of Us Researcher Workbench,\ which requires registration and completion of a training program. Aggregate allele frequency\ data is freely available.\
\ \Methods
\\ Whole-genome sequencing was performed on the Illumina NovaSeq 6000 platform with PCR-free library\ preparation targeting 30x coverage. Reads were aligned to GRCh38 and variants were called using\ the Illumina DRAGEN (Dynamic Read Analysis for GENomics) pipeline, which performs mapping,\ alignment, sorting, duplicate marking, and variant calling (SNVs and indels) in a single\ hardware-accelerated workflow. Joint genotyping was performed across all samples. Quality control\ included sample-level filtering for contamination, sex discordance, and relatedness, and\ variant-level filtering using VQSR.\ Population-specific allele frequencies were determined using local ancestry inference at UCSC by the Ioannidis group.\ The ancestry breakdown into European, East Asian, African, Indigenous American, Oceanian,\ and South Asian components is part of a pending publication.\
\\ The conversion of all source files for the varFreqs track is documented in the makeDoc file of the track.\ For some tracks, python scripts were needed and are also available from GitHub.\
\ \Credits
\\ The All of Us Research Program is supported by the National Institutes of Health. We thank the\ participants and the program for making frequency data available.\ The local ancestry inference was performed by Qudsi Aljabiri and Cole Shanks under\ Prof. Alexander Ioannidis, UC Santa Cruz.\
\ \References
\\
All of Us Research Program Genomics Investigators.\
\
Genomic data in the All of Us Research Program.\
Nature. 2024 Mar;627(8003):340-346.\
PMID: 38374255; PMC:
Triplosensitivity score: $triploScore
Dosage Sensitivity Evidence: $triploDescription\ parent clinGenComp on\ priority 2\ shortLabel ClinGen Triplosensitivity\ track clinGenTriplo\ type bigBed 9 +\ urls url="$$" PMID1="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID2="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID3="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID4="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID5="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" PMID6="https://pubmed.ncbi.nlm.nih.gov/$$/?from_single_result=$$&expanded_search_query=$$" mondoID="https://monarchinitiative.org/disease/$$"\ visibility pack\ clinvarCnv ClinVar CNVs bigBed 12 + ClinVar Copy Number Variants >= 50bp 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/bbi/clinvar/clinvarCnv.bb\ filter._varLen 50:999999999\ filterByRange._varLen on\ filterLabel._originCode Alelle Origin\ filterLimits._varLen 50:999999999\ filterType._allTypeCode multiple\ filterType._clinSignCode multiple\ filterType._originCode multiple\ filterValues._allTypeCode SUBST|single nucleotide variant - SUBST,STRUCT|translocation and fusion - STRUCT,LOSS|deletion and copy loss - LOSS,GAIN|duplication and copy gain - GAIN,INS|indel and insertion - INS,INV|inversion - INV,SEQALT|undetermined - SEQALT,SEQLEN|repeat change - SEQLEN\ filterValues._clinSignCode BN|benign,LB|likely benign,CF|conflicting,PG|pathogenic,LP|likely pathogenic,UC|uncertain,OT|other\ filterValues._originCode GERM|germline,SOM|somatic,GERMSOM|germline/somatic,NOVO|de novo,UNK|unknown\ group phenDis\ itemRgb on\ longLabel ClinVar Copy Number Variants >= 50bp\ mergeSpannedItems on\ mouseOverField _mouseOver\ noScoreFilter on\ parent clinvar\ priority 2\ searchIndex _dbVarSsvId,snpId,vcvId\ shortLabel ClinVar CNVs\ skipFields rcvAcc\ track clinvarCnv\ type bigBed 12 +\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ visibility hide\ dbSnp155ClinVar ClinVar dbSNP(155) bigDbSnp Short Genetic Variants from dbSNP Release 155 Included in ClinVar 1 2 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155ClinVar.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 155 Included in ClinVar\ parent dbSnp155ViewVariants off\ priority 2\ shortLabel ClinVar dbSNP(155)\ subGroups view=variants\ track dbSnp155ClinVar\ cls_gene_models CLS transcripts bigBed 12 + CLS transcript models 3 2 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/cls-models.bb\ itemRgb on\ longLabel CLS transcript models\ parent models_view on\ priority 2\ shortLabel CLS transcripts\ subGroups view=models_view sample=combined type=models\ track cls_gene_models\ type bigBed 12 +\ visibility pack\ wgEncodeGencodeCompV20 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV22 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV23 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV24 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV25 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV26 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV27 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV28 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV29 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV30 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 30 (Ensembl 96) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV31 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV32 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 32 (Ensembl 98) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV33 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV34 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 34 (Ensembl 100) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV35 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 35 (Ensembl 101) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV36 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 36 (Ensembl 102) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV37 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 37 (Ensembl 103) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV38 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 38 (Ensembl 104) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV39 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 39 (Ensembl 105) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV40 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 40 (Ensembl 106) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV41 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 41 (Ensembl 107) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV41\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV42 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 42 (Ensembl 108) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 42 (Ensembl 108)\ parent wgEncodeGencodeV42ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV42\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV43 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 43 (Ensembl 109) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 43 (Ensembl 109)\ parent wgEncodeGencodeV43ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV43\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV44 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 44 (Ensembl 110) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 44 (Ensembl 110)\ parent wgEncodeGencodeV44ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV44\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV45 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 45 (Ensembl 111) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 45 (Ensembl 111)\ parent wgEncodeGencodeV45ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV45\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV46 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 46 (Ensembl 112) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 46 (Ensembl 112)\ parent wgEncodeGencodeV46ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV46\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV47 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 47 (Ensembl 113) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 47 (Ensembl 113)\ parent wgEncodeGencodeV47ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV47\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV48 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 48 (Ensembl 114) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 48 (Ensembl 114)\ parent wgEncodeGencodeV48ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV48\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodeCompV49 Comprehensive genePred Comprehensive Gene Annotation Set from GENCODE Version 49 (Ensembl 115) 3 2 0 0 0 127 127 127 0 0 0 genes 1 longLabel Comprehensive Gene Annotation Set from GENCODE Version 49 (Ensembl 115)\ parent wgEncodeGencodeV49ViewGenes off\ priority 2\ shortLabel Comprehensive\ subGroups view=aGenes name=Comprehensive\ track wgEncodeGencodeCompV49\ trackHandler wgEncodeGencode\ type genePred\ cnvDevDelayControl Control gvf Copy Number Variation Morbidity Map of Developmental Delay - Control 3 2 0 0 0 127 127 127 0 0 0 phenDis 1 longLabel Copy Number Variation Morbidity Map of Developmental Delay - Control\ parent cnvDevDelay on\ priority 2\ shortLabel Control\ track cnvDevDelayControl\ type gvf\ visibility pack\ covidHgiGwasR4Pval COVID GWAS v4 bigLolly 9 + COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020) 3 2 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,
Description
\\ This track set shows the results of the\ GWAS Data Release 4 (October 2020) \ from the \ \ COVID-19 Host Genetics Initiative (HGI): \ a collaborative effort to facilitate \ the generation of meta-analysis across multiple studies contributed by\ partners world-wide\ to identify the genetic determinants of SARS-CoV-2 infection susceptibility, disease severity \ and outcomes. The COVID-19 HGI also aims to provide a platform for study partners to \ share analytical results in the form of summary statistics and/or individual level data of COVID-19\ host genetics research. At the time of this release, a total of 137 studies were registered with \ this effort.\
\ \\ The specific phenotypes studied by the COVID-19 HGI are those that benefit from maximal sample \ size: primary analysis on disease severity. For the Data Release 4 the number of cases have\ increased by nearly ten-fold (more than 30,000 COVID-19 cases and 1.47 million controls) by combining\ data from 34 studies across 16 countries. \
\ \\ The four tracks here are based on data from HGI meta-analyses A2, B2, C1, and C2, described here:\
\ \- \
- Severe COVID vars (A2): Cases with very severe respiratory failure confirmed\ for COVID-19 vs. population (i.e. everybody that is not a case).\ The increased sample size resulted in strong evidence of \ seven genomic regions associated with severe COVID-19 and one additional signal associated with \ COVID-19 partial-susceptibility. Many of these regions were identified by the \ Genetics of Mortality in Critical Care (GenOMICC)\ study and are shown below (table adapted from \ Pairo-Castineira et. al.).\ \ \ \
- Hosp COVID vars (B2): Cases hospitalized and confirmed for COVID-19 vs. \ population (i.e. everybody that is not a case) \ \
- Tested COVID vars (C1): Cases with laboratory confirmed SARS-CoV-2 infection, or \ health record/physician-confirmed COVID-19, or self-reported COVID-19 via questionare vs. laboratory\ /self-reported negative cases \ \
- All COVID vars (C2): Cases with laboratory confirmed SARS-CoV-2 infection, or \ health record/physician-confirmed COVID-19, or self-reported COVID-19 vs. population (i.e. everybody\ that is not a case) \ \
| SNP | \Human GRCh37/hg19 Assembly | \Human GRCh38/hg38 Assembly | \Risk Allele | \Alternative | \Gene nearest to SNP | \
|---|---|---|---|---|---|
| rs73064425 | \chr3:45901089-45901089 | \chr3:45859597-45859597 | \T | \C | \LZTFL1 | \
| rs9380142 | \chr6:29798794-29798794 | \chr6:29831017-29831017 | \A | \G | \HLA-G | \
| rs143334143 | \chr6:31121426-31121426 | \chr6:31153649-31153649 | \A | \G | \CCHCR1 | \
| rs10735079 | \chr12:113380008-113380008 | \chr12:112942203-112942203 | \A | \G | \OAS3 | \
| rs74956615 | \chr19:10427721-10427721 | \chr19:10317045-10317045 | \A | \T | \ICAM5/TYK2 | \
| rs2109069 | \chr19:4719443-4719443 | \chr19:4719431-4719431 | \A | \G | \DPP9 | \
| rs2236757 | \chr21:34624917-34624917 | \chr21:33252612-33252612 | \A | \G | \IFNAR2 | \
\
\
\
Display Conventions
\\ Displayed items are colored by GWAS effect: red for positive (harmful) effect, \ blue for negative (protective) effect.\ The height ('lollipop stem') of the item is based on statistical significance (p-value). \ For better visualization of the data, only SNPs with p-values smaller than 1e-3 are \ displayed by default.
\\ The color saturation indicates effect size (beta coefficient): values over the median of effect \ size are brightly colored (bright red\ \ , bright blue\ \ ),\ those below the median are paler (light red\ \ , light blue\ \ ). \
\\ Each track has separate display controls and data can be filtered according to the\ number of studies, minimum -log10 p-value, and the\ effect size (beta coefficient), using the track Configure options.
\\ Mouseover on items shows the rs ID (or chrom:pos if none assigned), both the non-effect \ and effect alleles, the effect size (beta coefficient), the p-value, and the number of \ studies.\ Additional information on each variant can be found on the details page by clicking on \ the item.
\ \Methods
\\ COVID-19 Host Genetics Initiative (HGI) GWAS meta-analysis round 4 (October 2020) results were \ used in this study. \ Each participating study partner submitted GWAS summary statistics for up to four \ of the COVID-19 phenotype definitions.
\\ Data were generated from genome-wide SNP array and whole exome and genome\ sequencing, leveraging the impact of both common and rare variants. The statistical analysis\ performed takes into account differences between sex, ancestry, and date of sample collection. \ Alleles were harmonized across studies and reported allele frequencies are based on gnomAD \ version 3.0 reference data. Most study partners used the SAIGE GWAS pipeline in order \ to generate summary statistics used for the COVID-19 HGI meta-analysis. The summary statistics \ of individual studies were manually examined for inflation, \ deflation, and excessive number of false positives. \ Qualifying summary statistics were filtered for \ INFO > 0.6 and MAF > 0.0001 prior to meta-analyzing the entirety of the data. \
\ The meta-analysis was performed using fixed effects inverse variance weighting.\ The meta-analysis software and workflow are available here. More information about the \ prospective studies, processing pipeline, results and data sharing can be found \ here.\ \ \Data Access
\\ The data underlying these tracks and summary statistics results are publicly available in COVID19-hg Release 4 (October 2020).\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. \ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the COVID-19 Host Genetics Initiative contributors and project leads for making these \ data available, and in particular to Rachel Liao, Juha Karjalainen, and Kumar Veerapen at the \ Broad Institute for their review and input during browser track development.\
\ \References
\ \\
COVID-19 Host Genetics Initiative.\
\
The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic\
factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.\
Eur J Hum Genet. 2020 Jun;28(6):715-718.\
PMID: 32404885; PMC:
\ Pairo-Castineira E, Clohisey S, Klaric L, Bretherick AD, Rawlik K, Pasko D, Walker S, Parkinson N,\ Fourman MH, Russell CD et al.\ \ Genetic mechanisms of critical illness in Covid-19.\ Nature. 2020 Dec 11;.\ PMID: 33307546\
\ \ \ phenDis 1 autoScale on\ bedNameLabel SNP\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22\ compositeTrack on\ filter._effectSizeAbs 0\ filter.effectSize -1.6:2.2\ filter.pValueLog 3\ filter.sourceCount 1\ filterByRange.effectSize on\ filterLabel._effectSizeAbs Minimum effect size +-\ filterLabel.effectSize Effect size range\ filterLabel.sourceCount Minimum number of studies\ filterLimits.effectSize -1.6:2.2\ lollyField 13\ longLabel COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)\ maxHeightPixels 48:75:128\ maxItems 500000\ mouseOver $name $ref/$alt effect $effectSize pVal $pValue studies $sourceCount\ noScoreFilter on\ priority 2\ shortLabel COVID GWAS v4\ superTrack covid pack\ track covidHgiGwasR4Pval\ type bigLolly 9 +\ viewLimits 0:10\ cq7Vcf CQ-7 Variants vcfTabix CQ-7 Variants 0 2 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/CQ-7.sort.vcf.gz\ longLabel CQ-7 Variants\ parent highReproVcfs\ shortLabel CQ-7 Variants\ subGroups view=vcfs\ track cq7Vcf\ type vcfTabix\ crossTissueMapsFullDetails Cross Tissue Details bigBarChart Cross tissue nuclei full details 0 2 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$\ Description
\\
This track collection shows data from \
Single-nucleus cross-tissue molecular reference maps toward\
understanding disease gene function. The dataset covers ~200,000 single nuclei\
from a total of 16 human donors across 25 samples, using 4 different sample preparation\
protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\
frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\
Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\
and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\
and some shared across all tissue types.\
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\
\ \\ Please see the\ GTEx portal\ for further interactive displays and additional data.
\ \Display Conventions and Configuration
\\ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\
\
| Color | \Cell Type | \
|---|---|
| Endothelial | |
| Epithelial | |
| Glia | |
| Immune | |
| Neuron | |
| Stromal | |
| Other |
\ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\
| Color | \Cell Type | \
|---|---|
| Inflammatory Macrophage | |
| Lung Macrophage | |
| Monocyte/Macrophage FCGR3A High | |
| Monocyte/Macrophage FCGR3A Low | |
| Macrophage HLAII High | |
| Macrophage LYVE1 High | |
| Proliferating Macrophage | |
| Dendritic Cell 1 | |
| Dendritic Cell 2 | |
| Mature Dendritic Cell | |
| Langerhans | |
| CD14+ Monocyte | |
| CD16+ Monocyte | |
| LAM-like | |
| Other |
Methods
\\ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\
\ \\ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\
\ \\ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\
\ \UCSC Methods
\\
The gene expression files were downloaded from the\
\
GTEx portal. The UCSC command line utilities matrixClusterColumns,\
matrixToBarChartBed, and bedToBigBed were used to transform\
these into a bar chart format bigBed file that can be visualized.\
The UCSC utilities can be found on\
our download server.\
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the GTEx Consortium for creating and analyzing these data.
\ \References
\\
Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\
Rouhana JM, Waldman J et al.\
\
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\
Science. 2022 May 13;376(6594):eabl4290.\
PMID: 35549429; PMC:
Description
\ \\
\
\
NOTE:
\
While the DECIPHER database is \
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions.\
Because the UCSC Genes mappings for CNVs are based on associations from\ RefSeq and UniProt, they are dependent on any interpretations from those\ sources. Furthermore, because many DECIPHER records refer to multiple gene\ names, or syndromes not tightly mapped to individual genes, the associations\ in this track should be treated with skepticism and any conclusions\ based on them should be carefully scrutinized using independent\ resources.\
\Data Display Agreement Notice
\
The CNV/SNV data are only available for display in the Browser, and not for bulk\
download. Access to bulk data may be obtained directly from DECIPHER\
(https://www.deciphergenomics.org/about/data-sharing) and is subject to a\
Data Access Agreement, in which the user certifies that no attempt to\
identify individual patients will be undertaken. The same restrictions\
apply to the public data displayed at UCSC in the UCSC Genome Browser;\
no one is authorized to attempt to identify patients by any means.\
These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\
\The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\
\\ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\
\ The CNVs and SNVs tracks show genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site.
\ \\ The Population CNVs track shows common copy-number variants (CNVs) and their\ population frequencies, lifted over from the hg19 assembly.
\ \Display Conventions and Configuration
\\ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \
\ \\ For the CNVs track, the entries are colored by the type of variant:\
- \
- red for loss \
- blue for gain \
- grey for amplification \
\ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\
\ \\ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\
- \
- black for likely or definitely pathogenic \
- dark grey for uncertain or unknown \
- light grey for likely or definitely benign \
\ For the Population CNVs track, genomic variants are visually differentiated to facilitate quick and\ clear identification. Variants are colored according to their clinical significance and type:\
\- \
- Red - exclusively deletion site. (deletions) \
- Blue - exclusively duplication site. (duplication) \
- Grey - deletions and duplications site. (del/dup) \
\ The Population CNVs track's mouseover tooltip provides the following information\ about the data:\
\- \
- Position: Specifies the chromosomal range of the CNV. \
- Type of CNV: Indicates if the variation is a loss, gain, or\ deletions/duplications(del/dup). \
- Frequency of CNV: Reflects how often the CNV occurs in the sampled\ population. \
- Number of Observations: The count of times this CNV was observed in the\ dataset. \
- Sample Size of Study: The total number of samples examined. \
Method
\\ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\
\ \ \Contact
\\ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\
\ \Data Access
\\ The DECIPHER data access and documentation can be found at\ DECIPHER Downloads.\
\ \References
\\
Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\
Carter NP.\
\
DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\
Am J Hum Genet. 2009 Apr;84(4):524-33.\
PMID: 19344873; PMC:
Position: $chrom:${chromStart}-${chromEnd}
Size: $_size
Type: $varType\ parent dgvPlus\ priority 2\ searchIndex name\ shortLabel DGV Supp Var\ track dgvSupporting\ type bigBed 9 +\ wgEncodeReg4Epigenetics DNase/ATAC/Histone/CTCF (Indiv.) bed 3 Peaks and signal from individual DNase, ATAC, histone, and CTCF experiments from ENCODE 4 0 2 0 0 0 127 127 127 0 0 0
Description
\ \This track displays genome-wide epigenomic signals and peaks from 3,201 individual\ ENCODE experiments, including DNase-seq and ATAC-seq for chromatin accessibility, and\ ChIP-seq for the histone modifications H3K4me3 and H3K27ac, as well as CTCF binding.
\ \- \
- DNase-seq identifies regions of open chromatin commonly associated with\ enhancers, promoters, and insulators (shown in\ green) \
- ATAC-seq identifies open chromatin via Tn5 transposase insertion (shown in\ cyan) \
- H3K4me3 ChIP-seq marks active and poised promoters (shown in\ red) \
- H3K27ac ChIP-seq marks active enhancers and promoters (shown in\ yellow) \
- CTCF ChIP-seq identifies binding sites at insulators and chromatin loop\ anchors (shown in blue) \
The track includes two subtrack types:
\- \
- Signal - a bigWig track of the experiment's signal \
- Peak - a bigBed track of the experiment's peaks \
These datasets provide the underlying experimental data used to generate the\ corresponding layered summary tracks. Additional datasets are available at the\ ENCODE portal.
\ \Display Conventions and Configuration
\ \Click a specific biosample type and organ/tissue combination to view available datasets.\ Subtracks can be further filtered by Assay (ATAC, DNase, CTCF, H3K27ac, and H3K4me3),\ Organ, Biosample Type, Data Type (Signal or Peak), and Life Stage.
\ \Available Organs and Tissues
\| Organ/Tissue | \DNase | \ATAC | \H3K4me3 | \H3K27ac | \CTCF | \
|---|---|---|---|---|---|
| adipose | ✓ | ✓ | ✓ | ✓ | ✓ |
| adrenal gland | ✓ | ✓ | ✓ | ✓ | ✓ |
| blood | ✓ | ✓ | ✓ | ✓ | ✓ |
| blood vessel | ✓ | ✓ | ✓ | ✓ | ✓ |
| bone | ✓ | – | ✓ | ✓ | ✓ |
| bone marrow | ✓ | ✓ | ✓ | ✓ | ✓ |
| brain | ✓ | ✓ | ✓ | ✓ | ✓ |
| breast | ✓ | ✓ | ✓ | ✓ | ✓ |
| connective tissue | ✓ | – | ✓ | ✓ | ✓ |
| embryo | ✓ | – | ✓ | ✓ | ✓ |
| epithelium | ✓ | – | ✓ | ✓ | ✓ |
| esophagus | ✓ | ✓ | ✓ | ✓ | ✓ |
| eye | ✓ | – | ✓ | ✓ | ✓ |
| gallbladder | ✓ | ✓ | – | – | – |
| heart | ✓ | ✓ | ✓ | ✓ | ✓ |
| kidney | ✓ | – | ✓ | ✓ | ✓ |
| large intestine | ✓ | ✓ | ✓ | ✓ | ✓ |
| limb | ✓ | – | – | – | – |
| liver | ✓ | ✓ | ✓ | ✓ | ✓ |
| lung | ✓ | ✓ | ✓ | ✓ | ✓ |
| lymphoid tissue | ✓ | – | – | – | – |
| mouth | ✓ | – | ✓ | ✓ | ✓ |
| muscle | ✓ | ✓ | ✓ | ✓ | ✓ |
| nerve | ✓ | ✓ | ✓ | ✓ | ✓ |
| nose | ✓ | – | – | – | – |
| ovary | ✓ | ✓ | ✓ | ✓ | ✓ |
| pancreas | ✓ | ✓ | ✓ | ✓ | ✓ |
| parathyroid gland | – | – | ✓ | ✓ | ✓ |
| penis | ✓ | – | ✓ | ✓ | ✓ |
| placenta | ✓ | – | ✓ | ✓ | ✓ |
| prostate | ✓ | ✓ | ✓ | ✓ | ✓ |
| skin | ✓ | ✓ | ✓ | ✓ | ✓ |
| small intestine | ✓ | ✓ | ✓ | ✓ | ✓ |
| spinal cord | ✓ | – | ✓ | ✓ | ✓ |
| spleen | ✓ | ✓ | ✓ | ✓ | ✓ |
| stomach | ✓ | ✓ | ✓ | ✓ | ✓ |
| testis | ✓ | ✓ | ✓ | ✓ | ✓ |
| thymus | ✓ | – | ✓ | ✓ | – |
| thyroid | ✓ | ✓ | ✓ | ✓ | ✓ |
| urinary bladder | ✓ | ✓ | ✓ | ✓ | – |
| uterus | ✓ | ✓ | ✓ | ✓ | ✓ |
| vagina | ✓ | – | ✓ | ✓ | ✓ |
Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.\ Clicking any accession in the track's configuration table links directly to the\ corresponding file details page on the ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://encode-public.s3.amazonaws.com/2021/02/25/f34812d4-08cd-4abb-956f-b722b516dcc6/ENCFF094EYJ.bigWig stdout
Credits
\ \Data were generated by the ENCODE Consortium through the following production labs:\ Drs. Barbara Wold (Caltech), Bing Ren (UCSD), Bradley Bernstein (Broad), Gregory Crawford (Duke), John Stamatoyannopoulos (UW), Joseph Costello (UCSF), Michael Snyder (Stanford), Peggy Farnham (USC), Richard Myers (HAIB), Stephen Montgomery (Stanford), Vishwanath Iyer (UTA), Will Greenleaf (Stanford), and Yin Shen (UCSF).
\ \The data were further processed for visualization through a collaborative effort between\ the Weng lab and the\ Moore lab at UMass\ Chan Medical School (funded by NIH grant HG012343). Integration and visualization were\ developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\ \\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 6\ shortLabel ENCFF316SZE_ENCFF263CSV_ENCFF144JOJ_ENCFF035TJC\ subGroups organ=adrenal_gland view=cCREs_view simpleBiosample=adrenal_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF316SZE_ENCFF263CSV_ENCFF144JOJ_ENCFF035TJC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ encBlacklist ENCODE Blacklist V2 bigBed 4 ENCODE Blacklist V2 3 2 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/encBlacklist.bb\ longLabel ENCODE Blacklist V2\ parent problematic off\ priority 2\ shortLabel ENCODE Blacklist V2\ track encBlacklist\ type bigBed 4\ wgEncodeReg4RnaSeq_ENCFF948NTI ENCSR000AAA - strand bigWig Aortic smooth muscle cell male adult (21 years) and male adult (54 years) - strand total RNA-seq signal 2 2 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/b66e8561-3245-432f-8265-1809521d9b94/ENCFF948NTI.bigWig\ color 255,37,41\ longLabel Aortic smooth muscle cell male adult (21 years) and male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAA - strand\ track wgEncodeReg4RnaSeq_ENCFF948NTI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF775RBW ENCSR000AHD Signal bigWig MCF-7 CTCF ENCSR000AHD signal 2 2 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d23fee19-4e3b-4d8c-949b-78841621bf50/ENCFF775RBW.bigWig\ color 65,171,173\ longLabel MCF-7 CTCF ENCSR000AHD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AHD Signal\ track wgEncodeReg4TfChip_ENCFF775RBW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF469WVA ENCSR000AKC Signal bigWig GM12878 H3K27ac signal 2 2 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/7ae35df2-f211-4f5a-90e2-1bce9a864622/ENCFF469WVA.bigWig\ color 181,145,0\ longLabel GM12878 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AKC Signal\ track wgEncodeReg4Epigenetics_ENCFF469WVA\ type bigWig\ visibility full\ epdNewPromoterNonCoding EPDnew NC v1 bigBed 8 ncRNA promoters from EPDnewNC human version 001 0 2 180 0 134 217 127 194 0 0 0 https://epd.epfl.ch/cgi-bin/get_doc?db=hsNCEpdNew&format=genome&entry=$$ expression 1 bigDataUrl /gbdb/hg38/bbi/epdNewHumanNc001.hg38.bb\ color 180,0,134\ dataVersion EPDNewNC Human Version 001 (April 2019)\ longLabel ncRNA promoters from EPDnewNC human version 001\ parent epdNew on\ priority 2\ shortLabel EPDnew NC v1\ track epdNewPromoterNonCoding\ url https://epd.epfl.ch/cgi-bin/get_doc?db=hsNCEpdNew&format=genome&entry=$$\ knownGeneV46 GENCODE V46 bigGenePred knownGenePep knownGeneMrna GENCODE V46 3 2 0 0 0 127 127 127 0 0 0
Description
\\ The GENCODE Genes track (version 46, May 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The v46 release was derived from the GTF file that contains annotations only on the main\ chromosomes. Statistics for this build and information on how they were generated can be found on\ the GENCODE site.
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is mostly based on the annotation type:
\- \
- MANE: MANE Select Plus Clinical transcripts.\ For non-MANE transcripts, the following conventions apply.\
- coding: protein coding transcripts, including polymorphic\ pseudogenes\
- non-coding: non-protein coding transcripts\
- pseudogene: pseudogene transcript annotations\
- problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain) \
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \ \Squishy-pack Display
\\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:
\ Protein_coding genes\- \
- MANE or Ensembl canonical\
- \
- 1st: MANE Select / Ensembl canonical \
- 2nd: MANE Plus Clinical \
\
- Coding biotypes\
- \
- 1st: protein_coding and protein_coding_LoF \
- 2nd: NMDs and NSDs \
- 3rd: retained intron and protein_coding_CDS_not_defined \
\
- Completeness\
- \
- 1st: full length \
- 2nd: CDS start/end not found \
\
- CARS score (only for coding transcripts) \
- Transcript genomic span and length (only for non-coding transcripts) \
- \
- Transcript biotype\
- \
- 1st: transcript biotype identical to gene biotype \
\
- Ensembl canonical \
- GENCODE basic \
- Transcript genomic span \
- Transcript length \
Methods
\\
The GENCODE v46 track was built from the GENCODE downloads file \
gencode.v46.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources\
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney. This version of the track was\ generated by Jonathan Casper.
\ \References
\ \\
Frankish A, Carbonell-Sala S, Diekhans M, Jungreis I, Loveland JE, Mudge JM, Sisu C, Wright JC,\
Arnan C, Barnes I et al.\
\
GENCODE: reference annotation for the human and mouse genomes in 2023.\
Nucleic Acids Res. 2023 Jan 6;51(D1):D942-D949.\
PMID: 36420896; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV46.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV46\ group genes\ html knownGeneV46\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V46\ maxItems 50000\ parent knownGeneArchive\ priority 2\ searchIndex name\ shortLabel GENCODE V46\ squishyPackField rank\ squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)\ squishyPackPoint 1\ track knownGeneV46\ type bigGenePred knownGenePep knownGeneMrna\ visibility pack\ missenseByGene Gene Missense bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Gene (Z-scores) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/missenseByGene.bb\ filter._zscore -19:11\ filterByRange._zscore on\ filterLabel._zscore Show only items between this Z-score range\ itemRgb on\ labelFields name,geneName\ longLabel gnomAD Predicted Missense Constraint Metrics By Gene (Z-scores) v2.1.1\ mouseOver Z: $_zscore$synonymous
$missense\ parent constraintV2 off\ priority 2\ searchIndex name,geneName\ shortLabel Gene Missense\ subGroups view=v2\ track missenseByGene\ type bigBed 12 +\ url https://gnomad.broadinstitute.org/gene/$$?dataset=gnomad_r2_1\ urlLabel View this Gene on the gnomAD browser\ geneHancerGenesDoubleElite GH genes TSS (DE) bigBed 9 GeneCards genes TSS (Double Elite) 3 2 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerGenesTssDoubleElite.hg38.bb\ longLabel GeneCards genes TSS (Double Elite)\ parent ghGeneTss on\ shortLabel GH genes TSS (DE)\ subGroups set=a_ELITE view=b_TSS\ track geneHancerGenesDoubleElite\ type bigBed 9\ gnomadExomesVariantsV2 gnomAD Exome v2 vcfTabix Genome Aggregation Database (gnomAD) Exome Variants v2.1 0 2 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/vcf/gnomad.exomes.r2.1.1.sites.liftover_grch38.vcf.gz\ longLabel Genome Aggregation Database (gnomAD) Exome Variants v2.1\ parent gnomadVariantsV2 on\ priority 2\ shortLabel gnomAD Exome v2\ track gnomadExomesVariantsV2\ gnomadExomesVariantsV4_1 gnomAD v4.1 Exomes bigBed 9 + Genome Aggregation Database (gnomAD) Exomes Variants v4.1 4 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$
Description
\\ GnomAD 4 used the whole-genome data from gnomAD 3 and added more exomes.\ The current v4.1 release includes a fix for the allele number\ issue.\ The v4.1 track shows variants from 807,162 individuals, including 730,947\ exomes and 76,215 genomes. This includes the 76,156 genomes from the gnomAD v3.1.2 release as well\ as new exome data from 416,555 UK Biobank individuals. For more detailed information on gnomAD\ v4.1, see the related blog post.\
\ \Display Conventions and Configuration
\\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\
| pLoF | |
| Missense | |
| Synonymous | |
| Other |
\ Mouse hover on an item will display the following details about each variant:
\- \
- Position \
- Total Allele Frequency (TotalAF) \
- Genes \
- Annotation \
- FILTER tags from VCF (FILTER) \
- Population with maximum AF (PopMaxAF) \
- Homozygous Individuals \
- Homozygous Individuals in XX samples (chrX and chrY only) \
- Hemizygous Individuals (chrX and chrY only) \
\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\
\ \Label Options
\\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\
\ \Filtering Options
\\ Three filters are available for this track:\
\- \
- FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
- Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP.\
- Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP.\
UCSC Methods
\\ The gnomAD v4.1 data is unfiltered.
\ \\
For the full steps used to create the gnomAD tracks at UCSC, please see the\
Data Access
\\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ The underlying bigBed only contains enough information necessary to use the track in the browser.\ The extra data like VEP annotations and CADD scores are available in the\ same directory\ as the bigBed but in the files details.tab.gz and details.tab.gz.gzi. The\ details.tab.gz contains the gzip compressed extra data in JSON format, and the .gzi file is\ available to speed searching of this data. Each variant has an associated md5sum in the name field\ of the bigBed which can be used along with the _dataOffset and _dataLen fields to get the\ associated external data. For example:
\ \\
# find an item of interest, the last two fields are _dataOffset and _dataLen:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1 12416 12417 854246d79dc5d02dcdbd5f5438542b6e [..omitted..] 67293 902\
\
# use _dataOffset and _dataLen (add one to _dataLen for the newline character):\
bgzip -b 67293 -s 903 gnomad.v4.1.genomes.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e {"DDX11L1": {"cons": ["non_coding_transcript_variant"...\
\
\
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\ varRep 1 bigDataUrl /gbdb/hg38/gnomAD/v4.1/exomes/exomes.bb\ dataVersion Release v4.1 (April 19, 2024)\ defaultLabelFields _displayName\ detailsDynamicTable _jsonVep|Variant Effect Predictor,_jsonPopTable|Population Frequencies,_jsonHapTable|Haplotype Frequencies\ detailsTabUrls _dataOffset=/gbdb/hg38/gnomAD/v4.1/exomes/gnomad.v4.1.exomes.details.tab.gz\ filter.AF 0.0\ filterLabel.AF Minor Allele Frequency Filter\ filterType.FILTER multipleListAnd\ filterType.variation_type multipleListOr\ filterValues.FILTER PASS,InbreedingCoeff,RF,AC0,AS_VQSR,indel_stack (chrM only),npg (chrM only)\ filterValues.annot pLoF,missense,synonymous,other\ filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,start_retained_variant,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation\ filterValuesDefault.FILTER PASS\ filterValuesDefault.annot pLoF,missense,synonymous\ html gnomadV4.1\ itemRgb on\ labelFields rsId,_displayName\ longLabel Genome Aggregation Database (gnomAD) Exomes Variants v4.1\ mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt)TotalAF: ${AF} (${AC}/${AN})
Genes: $genes
Annotation: $annot
FILTER: ${FILTER}
PopMaxAF: ${grpmax}
Homozygous Individuals: ${nhomalt}
Hemizygous Individuals (only in chrX & chrY): ${nhemi}\ parent gnomadVariantsV4.1 on\ priority 2\ searchIndex name,_displayName,rsId\ shortLabel gnomAD v4.1 Exomes\ skipEmptyFields on\ skipFields _displayName\ track gnomadExomesVariantsV4_1\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$
Description
\ \\ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. The hg19 genome has a track with the same name, but with\ more subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist \ for hg38.\ \
Problematic Regions
\\ The Problematic Regions track contains the following subtracks:\
- \
- \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ The data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\ \ \
- \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \ \ \
- \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\ \
Highly Reproducible Regions (HighRepro)
\\ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\
\- \
- a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8 \
- a HapMap Trio, samples NA10385, NA12248, NA12249 \
- a Genome in a Bottle sample, NA12878s \
GIAB Problematic Regions
\The Genome in a Bottle (GIAB) Problematic Regions tracks provide stratifications of the\ genome to evaluate variant calls in complex regions. It is designed for use with Global Alliance\ for Genomic Health (GA4GH) benchmarking tools like\ hap.py\ and includes regions with low complexity, segmental duplications, functional regions,\ and difficult-to-sequence areas. Developed in collaboration with GA4GH, the\ Genome in a Bottle (GIAB) consortium, and the\ Telomere-to-Telomere Consortium (T2T), the dataset aims to standardize the\ analysis of genetic variation by offering pre-defined BED files for stratifying true and false\ positives in genomic studies, facilitating accurate assessments in complex areas of the genome.
\ \\ The creation of the GIAB Problematic Regions tracks involves using a pipeline and configuration to\ generate stratification BED files that categorize genomic regions based on specific challenges,\ such as low complexity or difficult mapping, to facilitate accurate benchmarking of variant calls.\ For more information on the pipeline and configuration used, please visit the following webpage:\ \ https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/README.md.\ If you have questions or comments, please write to Justin Zook (jzook@nist.gov).
\ \Panmask Easy 151b Regions
\\ The Panmask Easy 151b Regions subtrack contains a set of sample-agnostic easy regions where\ short-read variant calling reaches high accuracy. Easy regions are derived for variant filtration\ agnostic to individual samples. They are genomic intervals where general variant callers achieve\ high accuracy without sophisticated filtering.
\\ A set of easy regions for ancient DNA variant filtering was generated by selecting 35-mers that\ could not be mapped elsewhere within one mismatch or gap. Read alignments from multiple samples\ were inspected to exclude regions with excessively high or low coverage or those enriched with\ low mapping quality alignments. The easy regions generated through this k-mer uniqueness procedure\ are referred to as pm151:lenient, where "pm" stands for panmask. In addition, low\ complexity regions identified by SDUST were removed.
\The pm151 regions are used to filter spurious variant calls in centromeres, long repeats, and\ other genomic regions where short-read mapping is often problematic. They cover 88.2% of hg38,\ 92.2% of coding regions, and 96.3% of ClinVar pathogenic variants. The track can be used to filter\ variant calls for clinical or research human samples. Like the HighRepro track in this container\ (see above), it shows regions that are easy to sequence, not those that are problematic. The data\ was derived from the HPRC assemblies, and this track presents the 151b-easy panmask set.
\ \Display Conventions and Configuration
\ \\ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\
\ \\ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\
\ \Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \
\
For automated download and analysis, the genome annotation is stored in bigBed files that\
can be downloaded from\
our download server.\
Individual\
regions or the whole genome annotation can be obtained using our tool bigBedToBed\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g. \
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout
\
Methods
\ \\ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\
\ \Credits
\\ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\
\ \References
\\
Amemiya HM, Kundaje A, Boyle AP.\
\
The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\
Sci Rep. 2019 Jun 27;9(1):9354.\
PMID: 31249361; PMC:
\
Dwarshuis N, Kalra D, McDaniel J, Sanio P, Alvarez Jerez P, Jadhav B, Huang WE, Mondal R, Busby B,\
Olson ND et al.\
\
The GIAB genomic stratifications resource for human reference genomes.\
Nat Commun. 2024 Oct 19;15(1):9029.\
PMID: 39424793; PMC:
\
Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA,\
Tezak Z, Lababidi S et al.\
\
Best practices for benchmarking germline small-variant calls in human genomes.\
Nat Biotechnol. 2019 May;37(5):555-560.\
PMID: 30858580; PMC:
\
Li H.\
\
Finding easy regions for short-read variant calling from pangenome data.\
ArXiv. 2025 Aug 8;.\
PMID: 40799803; PMC:
\
Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\
al.\
\
Assessing reproducibility of inherited variants detected with short-read whole genome\
sequencing.\
Genome Biol. 2022 Jan 3;23(1):2.\
PMID: 34980216; PMC:
Description
\ \\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\
\ \Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\
\ \ The algorithms included in this track are:\- \
- \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
- \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
- \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
- \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ and this score only covers coding regions so gnomAD 2 was more appropriate.\ \
- \ LINSIGHT (hg19 only):\ LINSIGHT is a statistical model for estimating negative selection on\ noncoding sequences in the human genome. The LINSIGHT score measures the\ probability of negative selection on non-coding sites which can be used to\ prioritize SNVs associated with genetic diseases or quantify evolutionary\ constraint on regulatory sequences, e.g., enhancers or promoters. More\ specifically, if a non-coding site is under negative selection, it will be\ less likely to have a substitution or SNV in the human lineage. In\ addition, even if we see a SNV at the site, it will tend to segregate at\ low frequency because of selection. See (Huang et al, Nat Genet 2017).\ \
- \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
Display Conventions and Configuration
\ \JARVIS
\\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.
\ See hg19 makeDoc and\ hg38 makeDoc.\\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.
\ \\
| Percentile | JARVIS score threshold |
|---|---|
| 99th | 0.9998 |
| 95th | 0.9826 |
| 90th | 0.7338 |
HMC
\\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.
\\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\
\ \MetaDome
\ \ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.\\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.
\ \\
| Classification | MetaDome Tolerance Score |
|---|---|
| Highly intolerant | ≤ 0.175 |
| Intolerant | ≤ 0.525 |
| Slightly intolerant | ≤ 0.7 |
MTR
\\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.
\ \Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:
\- \
- Green items MTR percentiles over 75\
- Black items MTR percentiles between 25 and 75\
- Red items MTR percentiles below 25\
- Blue items No MTR score\
\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.
\ \Methods
\ \JARVIS
\\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\
\ \HMC
\\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.
\ \MetaDome
\\
The authors provided a bed file containing codon coordinates along with the scores. \
This file was parsed with a python script to create the two tracks. For the first track\
the scores were aggregated for each coordinate, then the lowest score chosen for any\
overlaps and the result written out to bedGraph format. The file was then converted\
to bigWig with the bedGraphToBigWig utility. For the second track the file\
was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\
utility.
\ See the hg19 makeDoc for details including the build script.
\\ The raw MetaDome data can also be accessed via their Zenodo handle.
\ \MTR
\\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.
\\ See the hg19 makeDoc entry on MTR for more info.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \ \Credits
\ \\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \
\ \ \References
\ \\
Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\
\
Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\
learning.\
Nat Commun. 2021 Mar 8;12(1):1504.\
PMID: 33686085; PMC:
\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\
\ \\
Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\
\
MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\
domains.\
Hum Mutat. 2019 Aug;40(8):1030-1038.\
PMID: 31116477; PMC:
\
Silk M, Petrovski S, Ascher DB.\
\
MTR-Viewer: identifying regions within genes under purifying selection.\
Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\
PMID: 31170280; PMC:
\
Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\
Hardarson MT, Oddsson A, Jensson BO et al.\
\
The sequences of 150,119 genomes in the UK Biobank.\
Nature. 2022 Jul;607(7920):732-740.\
PMID: 35859178; PMC:
\
Huang YF, Gulko B, Siepel A.\
\
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic\
data.\
Nat Genet. 2017 Apr;49(4):618-624.\
PMID: 28288115; PMC:
Description
\\ This tracks contains variants of individual genotypes, usually phased, from the projects\ Human Diversity Genome Project, Simons Genome Diversity Project, gnomad's HGDP+1000 Genomes callset,\ and the Mexico Biobank.\ The original release of 1000 Genomes has its own, separate track.\ Projects where the released variants are not phased can be found in the container track "SNV Frequencies".\
\ \\ Available on hg19 and hg38:
\- \
- \ Mexico Biobank (MXB):\ This track displays phased alleles from the Mexico Biobank Project (MXB), based on array\ genotyping of 6,011 individuals sampled across all 32 states of Mexico during the 2000\ National Health Survey (ENSA 2000) conducted by the National Institute of Public Health\ (INSP). Frequencies can be plotted onto a map on\ MexVar.\ The hg38 track was lifted from hg19.\ \ \
- \ Simons Genome Diversity Project (SGDP):\ Funded by the Simons Foundation, the Simons Genome Diversity Project\ is a large-scale effort that sequenced high-coverage genomes from 300\ individuals (279 in this track) representing 142 diverse and often\ indigenous populations worldwide.\ Its goal was to capture the full range of human genetic\ diversity to better understand population history, migration, and\ adaptation. It is sampling populations in a way that represents as much\ anthropological, linguistic and cultural diversity as possible, and\ thus includes many deeply divergent human populations that are not well\ represented in other datasets. SGDP emphasizes breadth of global representation and\ population history, whereas HGDP emphasizes continuity and\ comparability across major population groups. Not all iits data is\ public, so this track contains only 279 genomes. For details, see\ (Mallick et al, Nature 2016). The hg38 track was lifted from hg19.\ \
\ Available only on hg38:
\- \
- \ Human Genome Diversity Project (HGDP):\ 929 high-coverage genome sequences from 54 diverse human populations,\ 26 of which are physically phased using linked-read sequencing. The\ Human Genome Diversity Project (HGDP) was launched in the early 1990s\ to study the genetic variation and evolutionary history of modern\ humans across global populations. Its goal was to document the full\ spectrum of human genetic diversity, particularly in indigenous and\ geographically isolated groups, to better understand population\ structure, migration, adaptation, and disease susceptibility.The\ project collected samples from ~1,000 individuals representing over 50\ populations worldwide, including groups from Africa, Europe, Asia,\ Oceania, and the Americas. These data have become a foundational\ reference for population genetics and human evolution studies.\ Data can be downloaded from the\ Sanger Website. For details, see (Bergström et al, Science 2020).\ \ \
- \ gnomAD HGDP and 1000 Genomes callset:\ A reprocessed version by the gnomAD project for the 1000 Genomes and\ Human Genome Diversity Project (HGDP) data, with 4094 genomes from 80\ populations. We already have separate, older tracks for 1000 Genomes on the main hg38\ browser and for HGDP, just above. This track combines both datasets, with harmonized data\ quality. For details, see (Koenig et al, 2024).\ \
Display Conventions
\ \\ Full haplotype display:\ In "pack" mode, this track sorts the haplotypes. This can be\ useful for determining the similarity between the samples and inferring\ inheritance at a particular locus.\ Each sample's phased and/or homozygous genotypes are split into haplotypes,\ clustered by similarity around a central variant (in pink), and sorted for\ display by their position in the clustering tree. Click a variant to center on it.\ The tree (as space allows) is drawn in the label area next to the track image.\ Leaf clusters, in which all haplotypes are identical (at least for the variants\ used in clustering), are colored purple. \
\\ For a full description of how the display works, please see our \ Haplotype Display help page.\ \
Data Access
\\ MXB: Allele frequencies by geographical state and ancestry are available via\ the MexVar platform.\ Raw genotype data are available under controlled access at the\ EGA (Study: EGAS00001005797; Dataset: EGAD00010002361). For the VCFs, email\ andres.moreno@cinvestav.mx.\
\ \Methods
\\ SGDP: The version used was\ https://sharehost.hms.harvard.edu/genetics/reich_lab/sgdp/vcf_variants/,\ merged with bcftools and lifted to hg38 with CrossMap. \
\ \Credits
\\ MXB: We thank the Center for Research and Advanced Studies (Cinvestav) of Mexico for\ generating and providing the frequency data, the National Institute of Medical\ Sciences and Nutrition (INCMNSZ) for DNA extraction, and the Ministry of Health\ together with the National Institute of Public Health (INSP) for the design and\ implementation of the National Health Survey 2000 (ENSA 2000). We also thank\ the ENSA-Genomics Consortium for their contributions to sample collection and\ data processing that made possible the construction of the MXB genomic\ resource.\
\\ SGDP: This project was funded by the Simons Foundation. Thanks to David Reich and Swapan \ Mallick for help with importing the data.\
\ \References
\\
Barberena-Jonas C, Medina-Muñoz SG, Cedillo-Castelán V, Sepúlveda-Morales T,\
Gonzaga-Jáuregui C, ENSA Genomics Consortium, García-García L, Ioannidis AG,\
Moreno-Estrada A.\
\
Clinical genetic variation across Hispanic populations in the Mexican Biobank.\
Nat Med. 2026 Jan 21;.\
DOI: 10.1038/s41591-025-04100-z; PMID:
\
Sohail M, Moreno-Estrada A.\
\
The Mexican Biobank Project promotes genetic discovery, inclusive science and local capacity\
building.\
Dis Model Mech. 2024 Jan 1;17(1).\
PMID: 38299665; PMC:
\
Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Corés CD, Barberena-Jonas C, Medina-Muñoz SG,\
Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L et al.\
\
Mexican Biobank advances population and medical genomics of diverse ancestries.\
Nature. 2023 Oct;622(7984):775-783.\
PMID: 37821706; PMC:
\
Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J\
et al.\
\
Insights into human genetic variation and population history from 929 diverse genomes.\
Science. 2020 Mar 20;367(6484).\
PMID: 32193295; PMC:
\
Koenig Z, Yohannes MT, Nkambule LL, Zhao X, Goodrich JK, Kim HA, Wilson MW, Tiao G, Hao SP, Sahakian\
N et al.\
\
A harmonized public resource of deeply sequenced diverse human genomes.\
Genome Res. 2024 Jun 25;34(5):796-809.\
PMID: 38749656; PMC:
\
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S,\
Tandon A et al.\
\
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.\
Nature. 2016 Oct 13;538(7624):201-206.\
PMID: 27654912; PMC:
Description
\\ The Human Methylation Atlas tracks display genome-wide DNA methylation profiles from \ deep whole-genome bisulfite sequencing (WGBS) of 39 primary human cell types \ sorted from 205 healthy tissue samples. This comprehensive resource enables fragment-level \ analysis across thousands of unique markers, providing a detailed reference for \ cell-type-specific methylation patterns.\
\ \\ The 205 samples from 39 cell type groups are organized into two data types:\
\- \
- Merged tracks display the combined methylation signal across all biological replicates\ \ for a given cell type, providing one representative track per cell type.
- Replicate tracks display the methylation signal for each individual sample and are\ \ available for detailed analysis. \
\
\ DNA methylation patterns are highly reproducible across individuals of the same cell type \ (>99.5% identical), reflecting the robustness of cell identity programs.\
\ \Display Conventions and Configuration
\\ Signal tracks display methylation beta values on a 0-1 scale, where 0 indicates fully \ unmethylated CpGs and 1 indicates fully methylated CpGs. A value of -1 indicates \ missing data. For optimal comparison across cell types, set the vertical viewing range \ to 0-1 with auto-scale off.\
\ \Track Colors
\\ Tracks are colored by tissue/cell type category as follows:\
\ \| Color | Cell Type(s) |
|---|---|
| Neurons | |
| Oligodendrocytes | |
| Thyroid Epithelium | |
| Prostate Epithelium | |
| Bladder Epithelium | |
| Heart Cardiomyocytes | |
| Smooth Muscle | |
| Heart Fibroblasts | |
| Skeletal Muscle | |
| Erythrocyte Progenitors | |
| Blood Granulocytes | |
| Blood Monocytes/Macrophages | |
| Blood T Cells | |
| Blood B Cells | |
| Blood NK Cells | |
| Pancreas Beta Cells | |
| Pancreas Alpha Cells | |
| Pancreas Delta Cells | |
| Pancreas Duct Cells | |
| Pancreas Acinar Cells | |
| Colon Epithelium | |
| Colon Fibroblasts | |
| Small Intestine Epithelium | |
| Gastric Epithelium | |
| Gallbladder | |
| Liver Hepatocytes | |
| Lung Bronchus Epithelium | |
| Lung Alveolar Epithelium | |
| Kidney Epithelium | |
| Endothelial | |
| Breast Basal Epithelium | |
| Breast Luminal Epithelium | |
| Fallopian Epithelium | |
| Ovary Epithelium | |
| Adipocytes | |
| Epidermal Keratinocytes | |
| Dermal Fibroblasts | |
| Bone Osteoblasts | |
| Head Neck Epithelium |
Methods
\ \Sample Collection and Sequencing
\\ Primary human cells were isolated from freshly dissociated adult healthy tissues using \ fluorescence-activated cell sorting (FACS), yielding high-purity preparations across major \ cell lineages. A total of 205 samples representing 77 primary cell types were collected from\ 137 consenting donors and merged into 39 cell type groups based on methylation similarity.\ Average sample purity exceeded 90% as determined by flow cytometry, gene expression, and\ DNA methylation analysis. Some cell types showed lower purity, including colon fibroblasts (78%),\ smooth muscle cells (82%), endothelial cells (86%), and adipocytes (87%).\
\ \\ Several cell types are absent from the atlas, typically due to limited availability of primary\ material. These include osteoblasts, cholangiocytes, cells of the adrenal gland, urethral\ epithelium, and haematopoietic stem cells. Subpopulations of interest, such as distinct neuronal or\ lymphocyte subtypes, were also not resolved separately.\
\ \\ Whole-genome bisulfite sequencing was performed using 150 bp paired-end reads at an average \ sequencing depth of 30× (minimum 6.62×). Libraries were prepared using the \ Accel-NGS Methyl-Seq DNA library preparation kit and sequenced on the Illumina NovaSeq 6000 \ platform.\
\ \Processing and Analysis
\\ Reads were mapped to the human genome (hg38) using bwa-meth, deduplicated with Sambamba, \ and processed into per-CpG methylation calls. The genome was segmented into 7.1 million \ non-overlapping methylation blocks using a multi-channel dynamic programming algorithm \ that identifies regions of homogeneous methylation across samples.\
\ \\ Cell-type-specific differentially methylated regions were identified using a one-versus-all \ comparison approach. Regions uniquely unmethylated in specific cell types were found to be \ enriched for transcriptional enhancers and tissue-specific transcription factor binding motifs.\
\ \\ Data processing was performed using \ wgbstools, an open-source \ computational suite for DNA methylation sequencing data representation, visualization, \ and analysis.\
\ \Data Access
\\ The raw data for these tracks can be explored interactively using the \ Table Browser or the \ Data Integrator. \ For automated analysis, the data may also be queried from our \ REST API.\
\ \\ The complete dataset, including all WGBS data files and processed methylation calls, \ is available from GEO accession \ GSE186458.\
\ \\ For questions regarding the data, please contact \ Prof. Tommy Kaplan at the Hebrew \ University of Jerusalem.\
\ \Credits
\\ Data generation and analysis were performed at the Hebrew University of Jerusalem by the \ Dor, Kaplan, and Glaser laboratories and collaborators. Sample collection involved \ collaboration with Hadassah Medical Center, Oregon Health & Science University, \ Karolinska Institute, and University of Alberta.\
\ \References
\\ Loyfer N, Magenheim J, Peretz A, Cann G, Bredno J, Klochendler A, Fox-Fisher I, \ Shabi-Porat S, Hecht M, Pelet T et al.\ \ A DNA methylation atlas of normal human cell types.\ Nature. 2023 Jan;613(7943):355-364.\ PMID: 36599988\
\ \\ Loyfer N, Rosenski J, Kaplan T.\ \ wgbstools: a computational suite for DNA methylation sequencing data analysis.\ Life Sci Alliance. 2026 Apr;9(4):e202503514.\ PMID: 41611450\
\ \ regulation 0 compositeTrack on\ dataVersion Data release version 2\ dimensions dimY=cellType dimX=dataType\ html methylationAtlasSignals.html\ longLabel Human Methylation Atlas WGBS cell type signals\ parent dnaMethylation\ priority 2\ shortLabel Human Methylation Atlas Signals\ subGroup1 cellType Cell_Type Neuron=Neuron Oligodend=Oligodend Heart-Cardio=Heart_Cardio Smooth-Musc=Smooth_Musc Heart-Fibro=Heart_Fibro Skeletal-Musc=Skeletal_Musc Adipocytes=Adipocytes Endothel=Endothel Blood-T=Blood_T Blood-B=Blood_B Blood-NK=Blood_NK Blood-Mono-Macro=Blood_Mono_Macro Blood-Granul=Blood_Granul Eryth-prog=Eryth_prog Head-Neck-Ep=Head_Neck_Ep Lung-Ep-Bron=Lung_Ep_Bron Lung-Ep-Alveo=Lung_Ep_Alveo Breast-Basal-Ep=Breast_Basal_Ep Breast-Luminal-Ep=Breast_Luminal_Ep Pancreas-Alpha=Pancreas_Alpha Pancreas-Beta=Pancreas_Beta Pancreas-Delta=Pancreas_Delta Pancreas-Acinar=Pancreas_Acinar Pancreas-Duct=Pancreas_Duct Liver-Hep=Liver_Hep Kidney-Ep=Kidney_Ep Gastric-Ep=Gastric_Ep Small-Int-Ep=Small_Int_Ep Colon-Ep=Colon_Ep Bladder-Ep=Bladder_Ep Prostate-Ep=Prostate_Ep Fallopian-Ep=Fallopian_Ep Ovary-Ep=Ovary_Ep Dermal-Fibro=Dermal_Fibro Epid-Kerat=Epid_Kerat Gallbladder=Gallbladder Colon-Fibro=Colon_Fibro Thyroid-Ep=Thyroid_Ep Bone-Osteob=Bone_Osteob\ subGroup2 dataType Data_Type Merged=Merged Replicate=Replicates\ track humanMethylationAtlasSignals\ type bigWig\ visibility full\ yLineOnOff on\ xGen_Research_Targets_V1 IDT xGen V1 T bigBed IDT - xGen Exome Research Panel V1 Target Regions 0 2 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/xgen-exome-research-panel-targets-hg38.bb\ color 100,143,255\ longLabel IDT - xGen Exome Research Panel V1 Target Regions\ parent exomeProbesets off\ shortLabel IDT xGen V1 T\ track xGen_Research_Targets_V1\ type bigBed\ nestedRepeats Interrupted Rpts bed 12 + Fragments of Interrupted Repeats Joined by RepeatMasker ID 0 2 0 0 0 127 127 127 1 0 0Description
\ \\ This track shows joined fragments of interrupted repeats extracted\ from the output of the \ RepeatMasker program which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences using the\ \ Repbase Update library of repeats from the\ Genetic\ Information Research Institute (GIRI). Repbase Update is described in\ Jurka (2000) in the References section below.\
\ \\ The detailed annotations from RepeatMasker are in the RepeatMasker track. This\ track shows fragments of original repeat insertions which have been interrupted\ by insertions of younger repeats or through local rearrangements. The fragments\ are joined using the ID column of RepeatMasker output.\
\ \Display Conventions and Configuration
\ \\ In pack or full mode, each interrupted repeat is displayed as boxes\ (fragments) joined by horizontal lines, labeled with the repeat name.\ If all fragments are on the same strand, arrows are added to the\ horizontal line to indicate the strand. In dense or squish mode, labels\ and arrows are omitted and in dense mode, all items are collapsed to\ fit on a single row.\
\ \\ Items are shaded according to the average identity score of their\ fragments. Usually, the shade of an item is similar to the shades of\ its fragments unless some fragments are much more diverged than\ others. The score displayed above is the average identity score,\ clipped to a range of 50% - 100% and then mapped to the range\ 0 - 1000 for shading in the browser.\
\ \Methods
\ \\ UCSC has used the most current versions of the RepeatMasker software\ and repeat libraries available to generate these data. Note that these\ versions may be newer than those that are publicly available on the Internet.\
\ \\ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. See the\ FAQ for more information.\
\ \Credits
\ \\ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\
\ \References
\ \\ Smit AFA, Hubley R, Green P.\ RepeatMasker Open-3.0.\ \ https://www.repeatmasker.org/. 1996-2010.\
\ \\ Repbase Update is described in:\
\ \\ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\
\ \\ For a discussion of repeats in mammalian genomes, see:\
\ \\ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\
\ \\ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\
\ rep 1 exonNumbers off\ group rep\ longLabel Fragments of Interrupted Repeats Joined by RepeatMasker ID\ priority 2\ shortLabel Interrupted Rpts\ track nestedRepeats\ type bed 12 +\ useScore 1\ visibility hide\ jaspar2022 JASPAR 2022 TFBS bigBed 6 + JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites 0 2 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg38/jaspar/JASPAR2022.bb\ filterValues.TFName Ahr::Arnt,Alx1,ALX3,Alx4,Ar,ARGFX,Arid3a,Arid3b,Arid5a,Arnt,ARNT2,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,ATF2,Atf3,ATF3,ATF4,ATF6,ATF7,Atoh1,ATOH7,BACH1,Bach1::Mafk,BACH2,BARHL1,BARHL2,BARX1,BARX2,BATF,BATF3,BATF::JUN,Bcl11B,BCL6,BCL6B,Bhlha15,BHLHA15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BNC2,BSX,CDX1,CDX2,CDX4,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,CREB3L4,Creb5,CREM,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,DLX1,Dlx2,Dlx3,Dlx4,Dlx5,DLX6,Dmbx1,Dmrt1,DMRT3,DMRTA1,DMRTA2,DMRTC2,DPRX,DRGX,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,Ebf2,EBF3,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF2,ELF3,ELF4,Elf5,ELK1,ELK1::HOXA1,ELK1::HOXB13,ELK1::SREBF2,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERF::FIGLA,ERF::FOXI1,ERF::FOXO1,ERF::HOXB13,ERF::NHLH1,ERF::SREBF2,Erg,ESR1,ESR2,ESRRA,ESRRB,Esrrg,ESX1,ETS1,ETS2,ETV1,ETV2,ETV2::DRGX,ETV2::FIGLA,ETV2::FOXI1,ETV2::HOXB13,ETV3,ETV4,ETV5,ETV5::DRGX,ETV5::FIGLA,ETV5::FOXI1,ETV5::FOXO1,ETV5::HOXA2,ETV6,ETV7,EVX1,EVX2,EWSR1-FLI1,FERD3L,FEV,FIGLA,FLI1,FLI1::DRGX,FLI1::FOXI1,FOS,FOSB::JUN,FOSB::JUNB,FOS::JUN,FOS::JUNB,FOS::JUND,FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUND,FOXA1,FOXA2,FOXA3,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,FOXD3,FOXE1,Foxf1,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,FOXJ2::ELF1,Foxj3,FOXK1,FOXK2,FOXL1,Foxl2,Foxn1,FOXN3,Foxo1,FOXO1::ELF1,FOXO1::ELK1,FOXO1::ELK3,FOXO1::FLI1,Foxo3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,GABPA,GATA1,GATA1::TAL1,GATA2,Gata3,GATA4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,GFI1,Gfi1B,Gli1,Gli2,GLI3,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,HAND2,HES1,HES2,HES5,HES6,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HMBOX1,Hmx1,Hmx2,Hmx3,Hnf1A,HNF1A,HNF1B,HNF4A,HNF4G,HOXA1,HOXA10,Hoxa11,Hoxa13,HOXA2,HOXA4,HOXA5,HOXA6,HOXA7,HOXA9,HOXB13,HOXB2,HOXB2::ELK1,HOXB3,HOXB4,HOXB5,HOXB6,HOXB7,HOXB8,HOXB9,HOXC10,HOXC11,HOXC12,HOXC13,HOXC4,HOXC8,HOXC9,HOXD10,HOXD11,HOXD12,HOXD12::ELK1,Hoxd13,HOXD3,HOXD4,HOXD8,HOXD9,HSF1,HSF2,HSF4,IKZF1,Ikzf3,INSM1,Irf1,IRF2,IRF3,IRF4,IRF5,IRF6,IRF7,IRF8,IRF9,Isl1,ISL2,ISX,JDP2,Jun,JUN,JUNB,JUND,JUN::JUNB,KLF1,KLF10,KLF11,KLF12,KLF13,KLF14,KLF15,KLF16,KLF17,KLF2,KLF3,KLF4,KLF5,KLF6,KLF7,KLF9,LBX1,LBX2,Lef1,Lhx1,LHX2,Lhx3,Lhx4,LHX5,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,MAF,MAFA,Mafb,MAFF,Mafg,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,MAZ,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MGA::EVX1,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSANTD3,MSC,Msgn1,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF5,MYF6,MYOD1,MYOG,MZF1,NEUROD1,Neurod2,NEUROG1,NEUROG2,Nfat5,Nfatc1,Nfatc2,NFATC3,NFATC4,NFE2,Nfe2l2,NFIA,NFIB,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NFYC,NHLH1,NHLH2,Nkx2-1,NKX2-2,NKX2-3,NKX2-4,NKX2-5,NKX2-8,Nkx3-1,Nkx3-2,NKX6-1,NKX6-2,NKX6-3,Nobox,NOTO,Npas2,Npas4,NR1D1,NR1D2,Nr1H2,NR1H2::RXRA,Nr1h3::Rxra,Nr1H4,NR1H4::RXRA,NR1I2,NR1I3,NR2C1,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2F6,NR2F6,NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,NR5A1,Nr5A2,NR6A1,Nrf1,NRL,OLIG1,Olig2,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OSR1,OSR2,OTX1,OTX2,OVOL1,OVOL2,PATZ1,PAX1,PAX2,PAX3,PAX4,PAX5,PAX6,Pax7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,PHOX2B,PITX1,PITX2,PITX3,PKNOX1,PKNOX2,PLAG1,Plagl1,PLAGL2,POU1F1,POU2F1,POU2F1::SOX2,POU2F2,POU2F3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARD,PPARG,Pparg::Rxra,PRDM1,Prdm14,Prdm15,Prdm4,Prdm5,PRDM9,PROP1,PROX1,PRRX1,PRRX2,Ptf1a,Ptf1A,RARA,RARA::RXRA,RARA::RXRG,Rarb,RARB,Rarg,RARG,RAX,RAX2,RBPJ,Rbpjl,REL,RELA,RELB,REST,RFX1,RFX2,RFX3,RFX4,RFX5,Rfx6,RFX7,Rhox11,RHOXF1,RORA,RORB,RORC,RREB1,Runx1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SATB1,SCRT1,SCRT2,Sf1,SHOX,Shox2,SIX1,SIX2,Six3,Six4,SMAD2,Smad2::Smad3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SMAD5,SNAI1,SNAI2,SNAI3,SOHLH2,Sox1,SOX10,Sox11,SOX12,SOX13,SOX14,SOX15,Sox17,SOX18,SOX2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP5,SP8,SP9,SPDEF,Spi1,SPIB,SPIC,Spz1,SREBF1,SREBF2,SRF,SRY,STAT1,STAT1::STAT2,Stat2,STAT3,Stat4,Stat5a,Stat5a::Stat5b,Stat5b,Stat6,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX18,TBX19,TBX2,TBX20,TBX21,TBX3,TBX4,TBX5,Tbx6,TBXT,Tcf12,TCF12,Tcf21,TCF21,TCF3,TCF4,TCF7,TCF7L1,TCF7L2,TCFL5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2B,TFAP2C,TFAP2E,TFAP4,TFAP4::ETV1,TFAP4::FLI1,TFCP2,Tfcp2l1,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,TGIF2LX,TGIF2LY,THAP1,Thap11,THRA,THRB,TLX2,TP53,TP63,TP73,TRPS1,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,Vdr,VENTX,VEZF1,VSX1,VSX2,Wt1,XBP1,Yy1,YY2,ZBED1,ZBED2,ZBTB12,ZBTB14,ZBTB18,ZBTB26,ZBTB32,ZBTB33,ZBTB6,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,ZFP14,Zfp335,ZFP42,ZFP57,Zfx,ZIC1,Zic1::Zic2,Zic2,Zic3,ZIC4,ZIC5,ZIM3,ZKSCAN1,ZKSCAN3,ZKSCAN5,ZNF135,ZNF136,ZNF140,ZNF143,ZNF148,ZNF16,ZNF189,ZNF211,ZNF214,ZNF24,ZNF257,ZNF263,ZNF274,ZNF281,ZNF282,ZNF317,ZNF320,ZNF324,ZNF331,ZNF341,ZNF343,ZNF354A,ZNF354C,ZNF382,ZNF384,ZNF410,ZNF416,ZNF417,ZNF418,Znf423,ZNF449,ZNF454,ZNF460,ZNF528,ZNF530,ZNF549,ZNF574,ZNF582,ZNF610,ZNF652,ZNF667,ZNF669,ZNF675,ZNF680,ZNF682,ZNF684,ZNF692,ZNF701,ZNF707,ZNF708,ZNF740,ZNF75D,ZNF76,ZNF768,ZNF784,ZNF8,ZNF816,ZNF85,ZNF93,ZSCAN29,ZSCAN31,ZSCAN4\ labelFields TFName\ longLabel JASPAR CORE 2022 - Predicted Transcription Factor Binding Sites\ motifPwmTable hgFixed.jasparCore2022\ parent jaspar off\ priority 2\ shortLabel JASPAR 2022 TFBS\ track jaspar2022\ type bigBed 6 +\ visibility hide\ lovdLong LOVD Variants >= 50 bp bigBed 9 + LOVD: Leiden Open Variation Database Public Variants, long >= 50 bp variants 0 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/lovd/lovd.hg38.long.bb\ group phenDis\ longLabel LOVD: Leiden Open Variation Database Public Variants, long >= 50 bp variants\ mergeSpannedItems on\ noScoreFilter on\ parent lovdComp\ shortLabel LOVD Variants >= 50 bp\ track lovdLong\ type bigBed 9 +\ urls id="https://varcache.lovd.nl/redirect/$$"\ visibility hide\ alllowmapandsegdupregions LowMap+SegDup bigBed 3 Genome In a Bottle: lowMap+SegDup regions 1 2 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/GIAB/alllowmapandsegdupregions.bb\ longLabel Genome In a Bottle: lowMap+SegDup regions\ parent problematicGIAB on\ shortLabel LowMap+SegDup\ track alllowmapandsegdupregions\ type bigBed 3\ visibility dense\ tgpNA19675_m004_MXL m004 MXL Trio vcfPhasedTrio 1000 Genomes m004 Mexican Ancestry from Los Angeles Trio 2 2 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes m004 Mexican Ancestry from Los Angeles Trio\ parent tgpTrios\ shortLabel m004 MXL Trio\ track tgpNA19675_m004_MXL\ type vcfPhasedTrio\ vcfChildSample NA19675|child\ vcfParentSamples NA19678|mother,NA19679|father\ visibility full\ mavedb_align_dna MaveDB DNA Align bigPsl Reference-Aligned DNA Sequences from MaveDB Experiments 3 2 0 0 0 127 127 127 0 0 0 expression 1 baseColorDefault diffBases\ baseColorUseSequence lfExtra\ bigDataUrl /gbdb/hg38/maveDB/mavedb_dna.bb\ longLabel Reference-Aligned DNA Sequences from MaveDB Experiments\ parent mavedb_align_composite\ shortLabel MaveDB DNA Align\ showDiffBasesAllScales .\ track mavedb_align_dna\ mavedb_maps MaveDB Heatmaps bigBed 12 + Variant Effect Maps from MaveDB 3 2 0 0 0 127 127 127 0 0 0Description
\\ This track provides heatmaps of multiplexed assays of variant effects (MAVE) from\ MaveDB. Each heatmap presents the results of an\ experiment where many small substitutions were tested within a gene to examine their\ functional consequences.\
\Display Conventions
\\ Heatmaps within the track display the consequence of substituting invididual amino acids within the\ genome with alternatives (alternatives are listed along the left edge of the heatmap). Score ranges\ vary among experiments, but each is presented with the highest scores in\ red, the lowest scores in\ blue, and scores at the midpoint between the two in\ silver. Higher scores correspond to a\ higher enrichment level for that variant compared to others in the experiment set.\
\ The column along the left edge of each heatmap provide single-letter amino acid codes do indicate what\ was substituted in for that piece of the experiment. = indicates a synonymous substitution, - indicates\ a deletion, and * indicates a stop codon.\
\ Cells where multiple scores were reported are marked with the score count (e.g. "2" if two scores were\ reported). Mousing over a cell in the heatmap will display the ID number of that particular substitution\ in the experiment, a MAVE-HGVS\ description of the substitution with three-letter amino acid codes, and the score (or scores, if more\ than one is present).\
\ When the display is zoomed out farther than a 200,000 base window, the display switches to a coverage plot\ of where the MaveDB heatmaps can be found.\
\Track Controls
\\ The track controls include a filter for the URN ID of the experiment (e.g. 00000103-a-1). The display supports\ full, pack, and squish modes. In dense mode, the track switches to a dense BED-like display where items mark\ the extent of individual heatmaps and exons indicate where the heatmap includes score values.\
\Methods
\\ Methods for the various experiments are described briefly on the individual details pages for each heatmap\ in the track, and in greater detail on the MaveDB page for that experiment (link available on our own\ details pages).\
\ JSON files containing data from these experiments were processed into UCSC's heatmap extension of the\ standard BED format for display here.\
\Data Access
\\ Direct access to the data files for these experiments can be obtained from\ MaveDB.\
\References
\\
Rubin AF, Stone J, Bianchi AH, Capodanno BJ, Da EY, Dias M, Esposito D, Frazer J, Fu Y, Grindstaff\
SB et al.\
\
MaveDB 2024: a curated community database with over seven million variant effects from multiplexed\
functional assays.\
Genome Biol. 2025 Jan 21;26(1):13.\
PMID: 39838450; PMC:
Description
\\ The MPRAVarDB track shows 239,028 variants successfully mapped to hg38\ (from 242,818 total) across 18 MPRA studies compiled in the MPRAVarDB database\ (Jin et al., 2024).\ Each variant was experimentally tested in an MPRA experiment to evaluate whether it\ affects regulatory activity. The database covers over 30 cell lines and 30 human\ diseases and traits, including neurodegenerative diseases, immune disorders,\ melanoma, multiple myeloma, and autoimmune diseases.\
\\ Note on cell lines: The cell line shown for each variant is the reporter\ cell line in which the human regulatory element was assayed. Several studies\ used mouse cell lines (e.g. Neuro-2a, N2A, NIH/3T3, MIN6) as reporter systems\ for human sequences; these variants retain human (hg38) coordinates.\
\ \\ Note on study type: Not all studies measure transcriptional regulation\ in the same sense. Two of the larger contributors,\ Griesemer\ et al., 2021 (72,546 variants) and\ Schuster\ et al., 2023 (26,546 variants), test 3'UTR variants placed downstream\ of the reporter, where the log2 fold change between alleles reflects changes\ in mRNA stability, decay, RBP or miRNA binding, or translation efficiency\ rather than transcriptional activation. The remaining studies test 5'\ regulatory elements (promoters and enhancers) where log2FC reflects changes\ in transcription. Together, the 3'UTR studies account for 99,092 of the\ 239,028 variants in the track (~41%).\
\ \Display Conventions
\\ Items are colored by statistical significance:\
- \
- Dark red: FDR < 0.05 (significant after multiple testing correction) — 22,451 variants (9.4%) \
- Orange: nominal p-value < 0.05 but FDR ≥ 0.05 — 17,773 variants (7.4%) \
- Grey: not significant (p-value ≥ 0.05) — 198,804 variants (83.2%) \
\ Each item shows the variant name (rsID when available, otherwise chr:pos:ref>alt),\ the reference and alternate alleles, the associated disease or trait, cell line,\ log2 fold change, p-value, and FDR.\
\ \\ Cell-type specificity: MPRA results are typically cell-type-specific,\ and significance in one cell line does not imply activity in another. For\ example, Tewhey\ et al., 2016 found only modest correlation (R ≈ 0.63)\ between LCL and HepG2 measurements of the same eQTL variants, and\ McAfee\ et al., 2023 reported that only 205 of 1,004 HEK293-positive\ variants overlapped HNP-positive variants. The cell line filter can be used\ to narrow results to a relevant context.\
\ \\ Note on Kircher et al., 2019:\ This study\ contributes 44,647 variants (~19% of the track) using a saturation mutagenesis\ design that tests nearly every possible nucleotide substitution at each\ position of 20 disease-associated regulatory elements at single-base-pair\ resolution: 10 promoters (TERT, LDLR, HBB, HBG1, HNF4A, MSMB, PKLR, F9,\ FOXE1, GP1BB) and 10 enhancers (SORT1, ZRS, BCL11A, IRF4, IRF6, MYC tested\ with two distinct enhancers, RET, TCF7L2, and the UC88 ultraconserved\ enhancer). Regions over those elements show many densely-packed Kircher\ variants that may dominate visualization at those loci.\
\ \Interpreting log2FC
\\ The log2 fold change is computed as\ log2(alt RNA/DNA) − log2(ref RNA/DNA).\ A positive value means the alternate allele drove more reporter activity than\ the reference allele in this assay; a negative value means the reverse. The\ linear allelic ratio is approximately 2log2FC: log2FC = 0.5\ corresponds to roughly 1.41× allelic difference, log2FC = 1.0\ to 2×, and log2FC = 2.0 to 4×. As noted in the\ Description section, log2FC reflects transcriptional activation for\ 5'-regulatory studies and steady-state mRNA abundance, decay, or translation\ efficiency for 3'UTR studies (Griesemer et al., 2021; Schuster\ et al., 2023).\
\ \Studies
\\ The following table lists the 18 MPRA studies included in MPRAVarDB, with the number of\ tested variants, diseases/traits, cell lines, and a brief description of the variant selection.\
\ \| Study | \Variants | \Disease/Trait | \Cell Line(s) | \Description | \
|---|---|---|---|---|
| Griesemer et al., 2021 | \72,546 | \NHGRI-EBI GWAS catalog | \GM12878, HEK293FT, HMEC, HepG2, K562, SKNSH | \3'UTR SNPs and indels in LD with GWAS catalog variants, variants under positive selection, and rare outlier expression variants from GTEx | \
| Kircher et al., 2019 | \44,647 | \Various (18 diseases including diabetes, cancer, blood disorders, limb malformations) | \HEK293T, HEL92.1.7, HaCaT, HeLa, HepG2, K562, LNCaP, MIN6, NIH/3T3, Neuro-2a, SK-MEL-28, SF7996 | \Saturation mutagenesis of 20 disease-associated regulatory elements at single base-pair resolution | \
| Abell et al., 2022 | \29,564 | \eQTL (no specific disease) | \GM12878 | \30,893 variants in LD with independent, common, top-ranked eQTL across 744 eGenes in the CEU cohort | \
| Tewhey et al., 2016 | \23,430 | \eQTL (no specific disease) | \GM12878 | \32,373 variants associated with eQTLs in lymphoblastoid cell lines | \
| Schuster et al., 2023 | \26,546 | \Prostate cancer | \PC3 | \14,497 single-nucleotide mutations enriched in oncogenic pathways and 3'UTR regulatory elements | \
| Mouri et al., 2022 | \14,549 | \Autoimmune diseases (Crohn's, IBD, psoriasis, MS, RA, T1D, ulcerative colitis) | \Jurkat | \GWAS variants from autoimmune disease loci tested for regulatory element activity in T cells | \
| McAfee et al., 2023 | \10,302 | \Schizophrenia | \HEK293s, HNPS | \5,173 fine-mapped schizophrenia GWAS variants | \
| Cooper et al., 2022 | \5,330 | \Alzheimer's disease, Progressive supranuclear palsy | \HEK293T | \5,706 noncoding SNVs from 25 AD and 9 PSP genome-wide significant loci | \
| Long et al., 2022 | \3,980 | \Melanoma | \C283T, UACC903 | \1,992 risk-associated variants in tight LD (r2>0.8) from 54 melanoma risk loci | \
| Myint et al., 2020 | \2,158 | \Schizophrenia, Alzheimer's disease | \K562, SH-SY5Y | \1,049 SZ and 30 AD variants in 64 SZ loci and 9 AD loci | \
| Choi et al., 2020 | \1,664 | \Melanoma | \HEK293FT, UACC903 | \GWAS melanoma risk variants | \
| Ajore et al., 2022 | \1,582 | \Multiple myeloma | \L363, MOLP8 | \1,039 variants in high LD (r2>0.8) at 23 MM risk loci | \
| Klein et al., 2019 | \1,119 | \Osteoarthritis | \Saos-2 | \1,605 SNPs in high LD (r2>0.8) at 35 lead SNPs associated with OA via GWAS | \
| Lu et al., 2021 | \1,036 | \Systemic lupus erythematosus | \GM12878, Jurkat | \18,312 variants in tight LD (r2>0.8) with 578 GWAS index variants at 531 loci | \
| Mulvey & Dougherty, 2021 | \275 | \Major depressive disorder | \N2A | \Over 1,000 SNPs from 39 neuropsychiatric GWAS loci, selected by overlap with eQTL and histone marks | \
| Ferraro et al., 2020 | \150 | \Rare variant expression (no specific disease) | \GM12878 | \Rare variants contributing to extreme expression, allelic expression, and splicing across 49 GTEx tissues | \
| Rao et al., 2021 | \88 | \Alcohol use disorder | \BLA, CE, NAC, SFC | \SNPs in 3'UTR of 88 genes from allele-specific expression analysis (30 AUD subjects vs 30 controls) | \
| Ulirsch et al., 2016 | \62 | \Red blood cell traits | \K562, K562+GATA1 | \2,756 variants in strong LD with 75 sentinel variants associated with RBC traits | \
\ Variant counts above are from the source publications (pre-liftOver totals).\ Of 242,818 total source variants, 239,028 lifted successfully to hg38; see Methods.\
\ \Methods
\\
Data was downloaded from the\
MPRAVarDB web server.\
Variants originally mapped to hg19 (213,689 of 242,818) were lifted to hg38\
using liftOver. 114 variants could not be mapped and were excluded.\
The remaining variants were merged with the 29,129 natively hg38-mapped variants\
to produce a total of 239,028 hg38 records.\
\ Significance thresholds across studies: The source studies in MPRAVarDB\ do not all use the same significance framework. Most studies apply a\ Benjamini-Hochberg FDR threshold (commonly 0.05 or 0.10), but some report only\ nominal regression p-values. For example,\ Tewhey\ et al., 2016 uses BH FDR < 0.05 to call "emVars",\ Griesemer\ et al., 2021 and\ McAfee\ et al., 2023 use BH FDR < 0.10, and\ Kircher\ et al., 2019 reports raw regression p-values rather than FDR. The\ track applies a uniform FDR < 0.05 / nominal\ p < 0.05 color cutoff for visual consistency, which is the\ more conservative of the FDR thresholds reported by the source studies. For\ any variant of interest, consult the source publication for the original\ significance call.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator\ and exported from there to spreadsheet or tab-sep tables.\ From scripts, the data can be accessed through our\ API, track=mpraVarDb.\
\\ For automated download and analysis, the genome annotation is stored in a bigBed\ file that can be downloaded from\ our download server.\ The file for this track is called mpravardb.bb. Individual\ regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a\ precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain features within a given range, e.g.\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/mpra/mpravardb/mpravardb.bb -chrom=chr21 -start=0 -end=100000000 stdout\
\\ The original annotation source data can be downloaded from the\ MPRAVarDB web server.\
\ \Credits
\\ Thanks to Weijia Jin and colleagues at the University of Florida for creating\ and maintaining the MPRAVarDB database.\
\ \References
\ \\
Abell NS, DeGorter MK, Gloudemans MJ, Greenwald E, Smith KS, He Z, Montgomery SB.\
\
Multiple causal variants underlie genetic associations in humans.\
Science. 2022 Mar 18;375(6586):1247-1254.\
PMID: 35298243; PMC:
\
Ajore R, Niroula A, Pertesi M, Cafaro C, Thodberg M, Went M, Bao EL, Duran-Lozano L, Lopez de\
Lapuente Portilla A, Olafsdottir T et al.\
\
Functional dissection of inherited non-coding variation influencing multiple myeloma risk.\
Nat Commun. 2022 Jan 10;13(1):151.\
PMID: 35013207; PMC:
\
Choi J, Zhang T, Vu A, Ablain J, Makowski MM, Colli LM, Xu M, Hennessey RC, Yin J, Rothschild H\
et al.\
\
Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting\
melanoma.\
Nat Commun. 2020 Jun 1;11(1):2718.\
PMID: 32483191; PMC:
\ Cooper YA, Teyssier N, Dräger NM, Guo Q, Davis JE, Sattler SM, Yang Z, Patel A, Wu S, Kosuri S\ et al.\ \ Functional regulatory variants implicate distinct transcriptional networks in dementia.\ Science. 2022 Aug 19;377(6608):eabi8654.\ PMID: 35981026\
\ \\
Ferraro NM, Strober BJ, Einson J, Abell NS, Aguet F, Barbeira AN, Brandt M, Bucan M, Castel SE,\
Davis JR et al.\
\
Transcriptomic signatures across human tissues identify functional rare genetic variation.\
Science. 2020 Sep 11;369(6509).\
PMID: 32913073; PMC:
\
Griesemer D, Xue JR, Reilly SK, Ulirsch JC, Kukreja K, Davis JR, Kanai M, Yang DK, Butts JC, Guney\
MH et al.\
\
Genome-wide functional screen of 3'UTR variants uncovers causal variants for human disease and\
evolution.\
Cell. 2021 Sep 30;184(20):5247-5260.e19.\
PMID: 34534445; PMC:
\
Jin W, Xia Y, Nizomov J, Liu Y, Li Z, Lu Q, Chen L.\
\
MPRAVarDB: an online database and web server for exploring regulatory effects of genetic variants.\
Bioinformatics. 2024 Oct 1;40(10).\
PMID: 39325859; PMC:
\
Kircher M, Xiong C, Martin B, Schubach M, Inoue F, Bell RJA, Costello JF, Shendure J, Ahituv N.\
\
Saturation mutagenesis of twenty disease-associated regulatory elements at single base-pair\
resolution.\
Nat Commun. 2019 Aug 8;10(1):3583.\
PMID: 31395865; PMC:
\
Klein JC, Keith A, Rice SJ, Shepherd C, Agarwal V, Loughlin J, Shendure J.\
\
Functional testing of thousands of osteoarthritis-associated variants for regulatory activity.\
Nat Commun. 2019 Jun 4;10(1):2434.\
PMID: 31164647; PMC:
\
Long E, Yin J, Funderburk KM, Xu M, Feng J, Kane A, Zhang T, Myers T, Golden A, Thakur R et\
al.\
\
Massively parallel reporter assays and variant scoring identified functional variants and target\
genes for melanoma loci and highlighted cell-type specificity.\
Am J Hum Genet. 2022 Dec 1;109(12):2210-2229.\
PMID: 36423637; PMC:
\
Lu X, Chen X, Forney C, Donmez O, Miller D, Parameswaran S, Hong T, Huang Y, Pujato M, Cazares T\
et al.\
\
Global discovery of lupus genetic risk variant allelic enhancer activity.\
Nat Commun. 2021 Mar 12;12(1):1611.\
PMID: 33712590; PMC:
\
McAfee JC, Lee S, Lee J, Bell JL, Krupa O, Davis J, Insigne K, Bond ML, Zhao N, Boyle AP et\
al.\
\
Systematic investigation of allelic regulatory activity of schizophrenia-associated common\
variants.\
Cell Genom. 2023 Oct 11;3(10):100404.\
PMID: 37868037; PMC:
\
Mouri K, Guo MH, de Boer CG, Lissner MM, Harten IA, Newby GA, DeBerg HA, Platt WF, Gentili M, Liu DR\
et al.\
\
Prioritization of autoimmune disease-associated genetic variants that perturb regulatory element\
activity in T cells.\
Nat Genet. 2022 May;54(5):603-612.\
PMID: 35513721; PMC:
\
Mulvey B, Dougherty JD.\
\
Transcriptional-regulatory convergence across functional MDD risk variants identified by massively\
parallel reporter assays.\
Transl Psychiatry. 2021 Jul 22;11(1):403.\
PMID: 34294677; PMC:
\
Myint L, Wang R, Boukas L, Hansen KD, Goff LA, Avramopoulos D.\
\
A screen of 1,049 schizophrenia and 30 Alzheimer's-associated variants for regulatory\
potential.\
Am J Med Genet B Neuropsychiatr Genet. 2020 Jan;183(1):61-73.\
PMID: 31503409; PMC:
\
Rao X, Thapa KS, Chen AB, Lin H, Gao H, Reiter JL, Hargreaves KA, Ipe J, Lai D, Xuei X et\
al.\
\
Allele-specific expression and high-throughput reporter assay reveal functional genetic variants\
associated with alcohol use disorders.\
Mol Psychiatry. 2021 Apr;26(4):1142-1151.\
PMID: 31477794; PMC:
\
Schuster SL, Arora S, Wladyka CL, Itagi P, Corey L, Young D, Stackhouse BL, Kollath L, Wu QV, Corey\
E et al.\
\
Multi-level functional genomics reveals molecular and cellular oncogenicity of patient-based\
3'-untranslated region mutations.\
Cell Rep. 2023 Aug 29;42(8):112840.\
PMID: 37516102; PMC:
\
Tewhey R, Kotliar D, Park DS, Liu B, Winnicki S, Reilly SK, Andersen KG, Mikkelsen TS, Lander ES,\
Schaffner SF et al.\
\
Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter\
Assay.\
Cell. 2016 Jun 2;165(6):1519-1529.\
PMID: 27259153; PMC:
\
Ulirsch JC, Nandakumar SK, Wang L, Giani FC, Zhang X, Rogov P, Melnikov A, McDonel P, Do R,\
Mikkelsen TS et al.\
\
Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.\
Cell. 2016 Jun 2;165(6):1530-1545.\
PMID: 27259154; PMC:
Ref/Alt: $ref/$alt
Cell line: $cellLine
Disease/Trait: $disease
log2FC: $_mouseOverLog2FC
p-value: $_mouseOverPvalue
FDR: $_mouseOverFdr\ parent mpra on\ priority 2\ shortLabel MPRAVarDB\ skipFields _mouseOverLog2FC,_mouseOverPvalue,_mouseOverFdr\ track mpraVarDb\ type bigBed 9 + 13\ urls rsid="https://www.ncbi.nlm.nih.gov/snp/$$"\ visibility dense\ caddC Mutation: C bigWig CADD 1.6 Score: Mutation is C 1 2 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd/c.bw\ longLabel CADD 1.6 Score: Mutation is C\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: C\ track caddC\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ promoterAiC Mutation: C bigWig PromoterAI: Mutation is C 1 2 200 0 0 0 0 200 0 0 0 phenDis 0 altColor 0,0,200\ alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/_promoterAi/c.bw\ color 200,0,0\ longLabel PromoterAI: Mutation is C\ maxHeightPixels 128:40:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent promoterAi on\ shortLabel Mutation: C\ track promoterAiC\ type bigWig\ viewLimits -1:1\ viewLimitsMax -1:1\ visibility dense\ cadd1_7_C Mutation: C bigWig CADD 1.7 Score: Mutation is C 1 2 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd1.7/c.bw\ longLabel CADD 1.7 Score: Mutation is C\ maxHeightPixels 128:20:8\ parent cadd1_7 on\ setColorWith /gbdb/hg38/cadd1.7/c.color.bb\ shortLabel Mutation: C\ track cadd1_7_C\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ revelC Mutation: C bigWig REVEL: Mutation is C 1 2 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/revel/c.bw\ longLabel REVEL: Mutation is C\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ setColorWith /gbdb/hg38/revel/c.color.bb\ shortLabel Mutation: C\ track revelC\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ alphaMissense_C Mutation: C bigWig AlphaMissense Score: Mutation is C 1 2 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/alphaMissense/c.bw\ longLabel AlphaMissense Score: Mutation is C\ maxHeightPixels 128:20:8\ parent alphaMissense on\ setColorWith /gbdb/hg38/alphaMissense/c.color.bb\ shortLabel Mutation: C\ track alphaMissense_C\ type bigWig\ viewLimits 0:1\ visibility dense\ mutScoreC Mutation: C bigWig MutScore: Mutation is C 2 2 50 80 200 152 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/mutscore/mutscoreC.bw\ longLabel MutScore: Mutation is C\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent mutScore on\ shortLabel Mutation: C\ track mutScoreC\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility full\ platinumNA12877 NA12877 vcfTabix Platinum genome variant NA12877 3 2 0 0 0 127 127 127 0 0 23 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX, varRep 1 bigDataUrl /gbdb/hg38/platinumGenomes/NA12877.vcf.gz\ chromosomes chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX\ configureByPopup off\ group varRep\ longLabel Platinum genome variant NA12877\ maxWindowToDraw 200000\ parent platinumGenomes\ shortLabel NA12877\ showHardyWeinberg on\ track platinumNA12877\ type vcfTabix\ vcfDoFilter off\ vcfDoMaf off\ visibility pack\ refSeqComposite NCBI RefSeq genePred RefSeq genes from NCBI 1 2 0 0 0 127 127 127 0 0 0
Description
\\ The NCBI RefSeq Genes composite track shows human protein-coding and non-protein-coding\ genes taken from the NCBI RNA reference sequences collection (RefSeq). All subtracks use\ coordinates provided by RefSeq, except for the UCSC RefSeq track, which UCSC produces by\ realigning the RefSeq RNAs to the genome. This realignment may result in occasional differences\ between the annotation coordinates provided by UCSC and NCBI. For RNA-seq analysis, we advise\ using NCBI aligned tables like RefSeq All or RefSeq Curated. See the \ Methods section for more details about how the different tracks were \ created.
\\ Please visit NCBI's Feedback for Gene and Reference Sequences (RefSeq) page to make suggestions, \ submit additions and corrections, or ask for help concerning RefSeq records.
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ This track is a composite track that contains differing data sets.\ To show only a selected set of subtracks, uncheck the boxes next to the tracks that you wish to \ hide. Note: Not all subtracks are available on all assemblies.
\ \ The possible subtracks include:\- \
- RefSeq aligned annotations and UCSC alignment of RefSeq annotations\ \
- \ RefSeq All – all curated and predicted annotations provided by \ RefSeq. \
- \ RefSeq Curated – subset of RefSeq All that includes only those \ annotations whose accessions begin with NM, NR, NP or YP. (NP and YP are used only for\ protein-coding genes on the mitochondrion; YP is used for human only.) \
- \ RefSeq Predicted – subset of RefSeq All that includes those annotations whose \ accessions begin with XM or XR. \
- \ RefSeq Other – all other annotations produced by the RefSeq group that \ do not fit the requirements for inclusion in the RefSeq Curated or the \ RefSeq Predicted tracks, as they do not have a product and therefore no RefSeq accession.\ More than 90% are pseudogenes, T-cell receptor or immunoglobulin segments.\ The few remaining entries are gene clusters (e.g. protocadherin). \
- \ RefSeq Alignments – alignments of RefSeq RNAs to the human genome provided\ by the RefSeq group, following the display conventions for\ PSL tracks. \
- \ RefSeq Diffs – alignment differences between the human reference genome(s) \ and RefSeq transcripts. (Track not currently available for every assembly.)\ \
- \ UCSC RefSeq – annotations generated from UCSC's realignment of RNAs with NM \ and NR accessions to the human genome. This track was previously known as the "RefSeq \ Genes" track. \
- \ RefSeq Select+MANE (subset) – Subset of RefSeq Curated, transcripts marked as \ RefSeq Select or MANE Select. \ A single Select transcript is chosen as representative for each protein-coding gene. \ This track includes transcripts categorized as MANE, which are further agreed upon as \ representative by both NCBI RefSeq and Ensembl/GENCODE, and have a 100% identical match \ to a transcript in the Ensembl annotation. See NCBI RefSeq Select. \ Note that we provide a separate track, MANE (hg38), \ which contains only the MANE transcripts.\ \
- \ RefSeq HGMD (subset) – Subset of RefSeq Curated, transcripts annotated by the Human\ Gene Mutation Database. This track is only available on the human genomes hg19 and hg38.\ It is the most restricted RefSeq subset, targeting clinical diagnostics.\ \
- \ RefSeq Historical – previous RefSeq transcript versions, including NM_ accessions\ and HGVS searches. This track is only available on hg38.\ \
- \ NCBI Orthologs – Orthologous genes were identified by \ \ NCBI's Eukaryotic Genome Annotation Pipeline\ for the NCBI Gene dataset using a combination of protein sequence similarity\ and local synteny analysis. Orthology is determined between the genome being annotated and a\ reference genome, such as human or zebrafish, and pairs of orthologs are grouped together.\ Transitive relationships are inferred within each group, for example, zebrafish <->\ human <-> mouse. For more information on how NCBI calculates orthologs, see the details \ provided \ \ here. This track is available for the following assemblies:\ hg38,\ mm39,\ danRer11,\ canFam6, and\ bosTau9.\ \
- \
\ The RefSeq All, RefSeq Curated, RefSeq Predicted, RefSeq HGMD,\ RefSeq Select/MANE and UCSC RefSeq tracks follow the display conventions for\ gene prediction tracks.\ The color shading indicates the level of review the RefSeq record has undergone:\ predicted (light), provisional (medium), or reviewed (dark), as defined by RefSeq.
\ \\
| Color | \Level of review | \
|---|---|
| \ | Reviewed: the RefSeq record has been reviewed by NCBI staff or by a collaborator. The NCBI review process includes assessing available sequence data and the literature. Some RefSeq records may incorporate expanded sequence and annotation information. | \
| \ | Provisional: the RefSeq record has not yet been subject to individual review. The initial sequence-to-gene association has been established by outside collaborators or NCBI staff. | \
| \ | Predicted: the RefSeq record has not yet been subject to individual review, and some aspect of the RefSeq record is predicted. | \
\ The item labels and codon display properties for features within this track can be configured \ through the check-box controls at the top of the track description page. To adjust the settings \ for an individual subtrack, click the wrench icon next to the track name in the subtrack list.
\- \
- \ Label: By default, items are labeled by gene name. Click the appropriate Label \ option to display the accession name or OMIM identifier instead of the gene name, show all or a \ subset of these labels including the gene name, OMIM identifier and accession names, or turn off \ the label completely. \
- \ Codon coloring: This track has an optional codon coloring feature that \ allows users to quickly validate and compare gene predictions. To display codon colors, select the\ genomic codons option from the Color track by codons pull-down menu. For more \ information about this feature, go to the Coloring Gene Predictions and Annotations by Codon page. \
The RefSeq Diffs track contains five different types of inconsistency between the\ reference genome sequence and the RefSeq transcript sequences. The five types of differences are\ as follows:\
- \
- \ mismatch – aligned but mismatching bases, plus HGVS g. \ to show the genomic change required to match the transcript and HGVS c./n. \ to show the transcript change required to match the genome. \
- \ short gap – genomic gaps that are too small to be introns (arbitrary cutoff of\ \ < 45 bp), most likely insertions/deletion variants or errors, with HGVS g. and c./n. \ \ showing differences. \
- \ shift gap – shortGap items whose placement could be shifted left and/or right on\ \ the genome due to repetitive sequence, with HGVS c./n. position range of ambiguous region \ \ in transcript. Here, thin and thick lines are used -- the thin line shows the span of the\ \ repetitive sequence, and the thick line shows the rightmost shifted gap.\ \
- \ double gap – genomic gaps that are long enough to be introns but that skip over \ \ transcript sequence (invisible in default setting), with HGVS c./n. deletion. \
- \ skipped – sequence at the beginning or end of a transcript that is not aligned to\ the genome\ (invisible in default setting), with HGVS c./n. deletion \ \
\ When reporting HGVS with RefSeq sequences, to make sure that results from\ research articles can be mapped to the genome unambiguously, \ please specify the RefSeq annotation release displayed on the transcript's\ Genome Browser details page and also the RefSeq transcript ID with version\ (e.g. NM_012309.4 not NM_012309). \
\ \ \ \Methods
\\ Tracks contained in the RefSeq annotation and RefSeq RNA alignment tracks were created at UCSC using \ data from the NCBI RefSeq project. Data files were downloaded from RefSeq in GFF file format and \ converted to the genePred and PSL table formats for display in the Genome Browser. Information about\ the NCBI annotation pipeline can be found \ here.
\ \The RefSeq Diffs track is generated by UCSC using NCBI's RefSeq RNA alignments.
\\ The UCSC RefSeq Genes track is constructed using the same methods as previous RefSeq Genes tracks.\ RefSeq RNAs were aligned against the human genome using BLAT. Those with an alignment of\ less than 15% were discarded. When a single RNA aligned in multiple places, the alignment\ having the highest base identity was identified. Only alignments having a base identity\ level within 0.1% of the best and at least 96% base identity with the genomic sequence were\ kept.
\\
The NCBI Orthologs track was generated using the latest\
NCBI files (gene2accession and\
gene_orthologs). NCBI chromosome identifiers were mapped to UCSC-compatible IDs using\
species-specific chromosome alias files, and genes were filtered to include only those located on\
valid NCBI chromosomes. A custom
Data Access
\\ The raw data for these tracks can be accessed in multiple ways. It can be explored interactively \ using the REST API,\ Table Browser or\ Data Integrator. The tables can also be accessed programmatically through our\ public MySQL server or downloaded from our\ downloads server for local processing. The previous track versions are available\ in the archives of our downloads server. You can also access any RefSeq table\ entries in JSON format through our \ JSON API.
\\ The data in the RefSeq Other, RefSeq Diffs, and NCBI Orthologs tracks are organized in\ bigBed file format; more\ information about accessing the information in this bigBed file can be found\ below. The other subtracks are associated with database tables as follows:
\- \
- genePred format: \
- RefSeq All - ncbiRefSeq \
- RefSeq Curated - ncbiRefSeqCurated \
- RefSeq Predicted - ncbiRefSeqPredicted \
- RefSeq HGMD - ncbiRefSeqHgmd \
- RefSeq Select+MANE - ncbiRefSeqSelect \
- UCSC RefSeq - refGene \
- PSL format: \
- RefSeq Alignments - ncbiRefSeqPsl \
- \
- \ \
\ The first column of each of these tables is "bin". This column is designed\ to speed up access for display in the Genome Browser, but can be safely ignored in downstream\ analysis. You can read more about the bin indexing system\ here.
\\ The annotations in the RefSeqOther, RefSeqDiffs, and NCBI Orthologs tracks are stored in bigBed\ files, which can be obtained from our downloads server here,\ ncbiRefSeqOther.bb,\ ncbiRefSeqDiffs.bb, and\ ncbiOrtho.bb.\ Individual regions or the whole set of genome-wide annotations can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system from the utilities directory linked below. For example, to extract only\ annotations in a given region, you could use the following command:
\\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncbiRefSeq/ncbiRefSeqOther.bb\ -chrom=chr16 -start=34990190 -end=36727467 stdout
\\ You can download a GTF format version of the RefSeq All table from the \ GTF downloads directory.\ The genePred format tracks can also be converted to GTF format using the\ genePredToGtf utility, available from the\ utilities directory on the UCSC downloads \ server. The utility can be run from the command line like so:
\ genePredToGtf hg38 ncbiRefSeqPredicted ncbiRefSeqPredicted.gtf\\ Note that using genePredToGtf in this manner accesses our public MySQL server, and you therefore \ must set up your hg.conf as described on the MySQL page linked near the beginning of the Data Access\ section.
\\ A file containing the RNA sequences in FASTA format for all items in the RefSeq All, RefSeq Curated, \ and RefSeq Predicted tracks can be found on our downloads server\ here.
\\ Please refer to our mailing list archives for questions.
\ \\ Previous versions of the ncbiRefSeq set of tracks can be found on our archive download server.\
\ \Credits
\\ This track was produced at UCSC from data generated by scientists worldwide and curated by the\ NCBI RefSeq project.
\ \References
\\
Kent WJ.\
BLAT - the BLAST-like \
alignment tool. Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
\ Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\ Landrum MJ, McGarvey KM et al.\ RefSeq: an update on mammalian reference sequences.\ Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\ PMID: 24259432; PMC: \ PMC3965018
\\
Pruitt KD, Tatusova T, Maglott DR.\
\
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts \
and proteins.\
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\
PMID: 15608248; PMC:
Description
\\ The NMDetective tracks display genome-wide predictions of nonsense-mediated mRNA\ decay (NMD) efficiency from\ Lindeboom et al. 2016.\ NMDetective scores predict whether a premature termination codon (PTC) at a given position\ will trigger NMD and mRNA degradation, or whether the transcript will escape NMD and\ potentially produce a truncated protein.\
\ \\ Scores range from approximately −1 to +1. Positive values indicate that a PTC at\ that position is predicted to trigger NMD (the mRNA is degraded). Negative values indicate\ that the PTC is predicted to escape NMD (the truncated mRNA may be translated into an\ aberrant protein). Values near zero indicate intermediate or uncertain NMD efficiency.\
\ \Subtracks
\| Track | Description |
|---|---|
| NMDetective-A | \Random forest model predicting NMD efficiency for all possible PTCs introduced\ by single-nucleotide variants. Explains ~71% of systematic variance in NMD\ efficiency. |
| NMDetective-B | \Simplified decision tree model for all possible PTCs. Slightly lower accuracy\ (~68% variance explained) but more interpretable, making it suitable for\ clinical applications. |
| NMDetective-A PTC | \Random forest model predicting NMD efficiency specifically for the first\ out-of-frame PTC introduced by frameshifting indel mutations. |
| NMDetective-B PTC | \Decision tree model for the first out-of-frame PTC from frameshifting\ indels. |
Display Conventions and Configuration
\\ Each subtrack is displayed as a signal (bigWig) track. By default, the vertical axis\ ranges from −1 to +1. Regions with positive values (predicted NMD-triggering) are\ shown above the baseline; regions with negative values (predicted NMD escape) are shown\ below.\
\- \
- Blue tracks (NMDetective-A and -B): predictions\ for all possible PTCs from single-nucleotide nonsense variants. \
- Green tracks (NMDetective-A PTC and -B PTC):\ predictions for the first out-of-frame PTC from frameshifting indels. \
Methods
\\ The NMDetective models were trained on somatic nonsense mutation data from 9,769 cancer\ patients and validated with frameshift mutations and germline variants\ (Lindeboom et al. 2019).\ The models incorporate the following features to predict NMD efficiency:\
\- \
- Whether the PTC falls in the last exon \
- Distance to the last 50 nt of the penultimate exon (the EJC-based “50 bp rule”) \
- Distance from the coding start (start-proximal NMD insensitivity) \
- Exon length \
- mRNA half-life \
- Distance to the downstream exon-junction complex \
- Distance to the wild-type stop codon \
\ NMDetective-A (random forest regression) captures non-linear interactions among\ these features and achieves the highest predictive accuracy.\ NMDetective-B (decision tree) applies a simpler rule-based classification that\ is more transparent, with a modest reduction in accuracy.\
\ \\ The predictions were generated for every possible PTC-introducing single-nucleotide\ variant and for the first out-of-frame PTC from every possible single-nucleotide\ frameshifting indel across all human protein-coding transcripts. The original bedGraph\ custom track files were downloaded from the\ NMDetective Figshare page\ resource and converted to bigWig format at UCSC.\
\ \Data Access
\\ The data underlying these tracks can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Rik Lindeboom for providing custom tracks and the original NMDetective data\ on Figshare.\
\ \References
\ \\
Lindeboom RG, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\
Lindeboom RGH, Vermeulen M, Lehner B, Supek F.\
\
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer\
immunotherapy.\
Nat Genet. 2019 Nov;51(11):1645-1651.\
PMID: 31659324; PMC:
Description
\ \\
\
\
\
NOTE:
\
OMIM is intended for use primarily by physicians and other\
professionals concerned with genetic disorders, by genetics researchers, and\
by advanced students in science and medicine. While the OMIM database is\
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions. Further, please be\
sure to click through to omim.org for the very latest, as they are continually \
updating data.
NOTE ABOUT DOWNLOADS:
\
OMIM is the property \
of Johns Hopkins University and is not available for download or mirroring \
by any third party without their permission. Please see \
OMIM\
for downloads.
OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\
\ \\ The OMIM data are separated into three separate tracks:\
\ \OMIM Alleles \
Variants in the OMIM database that have associated \
dbSNP identifiers. This track is currently unavailable on the hg38 assembly,\
as it depends on dbSNP data that has not been released yet.\
\
OMIM Genes\
The genomic positions of gene entries in the OMIM \
database. The coloring indicates the associated OMIM phenotype map key.\
OMIM Phenotypes - Gene Unknown\
Regions known to be associated with a phenotype, \
but for which no specific gene is known to be causative. This track \
also includes known multi-gene syndromes.\
\ \ \
\ This track shows the genomic positions of all gene entries in the Online Mendelian\ Inheritance in Man (OMIM) database.\
\ \Display Conventions and Configuration
\ \Genomic locations of OMIM gene entries are displayed as solid blocks. The entries are colored\ according to the associated OMIM phenotype map key (if any):\
- \
- Lighter Green for phenotype map key 1 OMIM records\ - the disorder has been placed on the map based on its association with\ a gene, but the underlying defect is not known.\
- Light Green for phenotype map key 2 OMIM records\ - the disorder has been placed on the map by linkage; no mutation has\ been found.\
- Dark Green for phenotype map key 3 OMIM records\ - the molecular basis for the disorder is known; a mutation has been\ found in the gene.\
- Purple for phenotype map key 4 OMIM records\ - a contiguous gene deletion or duplication syndrome; multiple genes\ are deleted or duplicated causing the phenotype.\
- Light Gray for Others\ - no associated OMIM phenotype map key info available.\
Gene symbol and disease information, when available, are displayed on the details page for an\ item, and links to related RefSeq Genes and UCSC Genes are given.\
\The descriptions of the OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry. Items\ displayed can be filtered according to phenotype map key on the track controls page. \
\ \Methods
\\ The mappings displayed in this track are based on OMIM gene entries, their Entrez Gene IDs, and\ the corresponding RefSeq Gene locations:\
- \
- The data file genemap.txt from OMIM was loaded into the MySQL table omimGeneMap.\
- The data file mim2gene.txt from OMIM was processed and loaded into the MySQL table omim2gene.\
- Entries in genemap.txt having disorder info were parsed and loaded into the \ omimPhenotype table.\
- For each OMIM gene in the omim2gene table, the\ Entrez Gene ID was used to get the\ corresponding RefSeq Gene ID via\ the ncbiRefLink table, and the RefSeq ID was used to get the genomic location from the\ ncbiRefSeq table. The OMIM gene IDs and corresponding RefSeq Gene locations were loaded into\ the omimGene2 table, the primary table for this track.\ \
Data Access
\\ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.
\\ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser "entitlement". They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.
\\ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.
\\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.
\ \Example: Retrieve phenotype, Mode of Inheritance, and other OMIM data within a range
\- \
- Go to Table Browser, make sure the right dataset is selected:\ group: Phenotype and Literature, track: OMIM Genes, table: omimGene2. \
- Define region of interest by entering coordinates or a gene symbol into the "Position" textbox, such as\ chr1:11,106,535-11,262,551 or MTOR, or upload a list. \
- Format your data by setting the "Output format" dropdown to "selected fields from primary\ and related Tables" and click . This \ brings up the data field and linked table selection page. \
- Select chrom, chromStart, chromEnd, and name from omimGene2 table. Then select the related tables omim2gene\ and omimPhenotype and click .\ This brings up the fields of the linked tables, where you can select approvedGeneSymbol,\ omimID, description, omimPhenotypeMapKey, and inhMode. \
- Click on the to proceed to the results page:\
chr1\ 11106534\ 11262551\ MTOR\ 601231,\ Smith-Kingsmore syndrome,Focal cortical dysplasia, type II, somatic,\ 3,\ Autosomal dominant
For a quick link to pre-fill these options, click \ \ this session link.\ \
\ \Credits
\\ Thanks to OMIM and NCBI for the use of their data. This track was\ constructed by Fan Hsu, Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.
\ \References
\Amberger J, Bocchini CA, Scott AF, Hamosh A. \ McKusick's Online Mendelian Inheritance in Man (OMIM®). \ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6. Epub 2008 Oct 8.\
\\ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. \ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of \ human genes and genetic disorders. \ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\
\ phenDis 1 color 0, 80, 0\ hgsid on\ longLabel OMIM Gene Phenotypes - Dark Green Can Be Disease-causing\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ parent omimContainer\ priority 2\ shortLabel OMIM Genes\ tableBrowser noGenome omimGeneMap omimGeneMap2 omimPhenotype omimGeneSymbol omim2gene\ track omimGene2\ type bed 4\ url http://www.omim.org/entry/\ visibility dense\ panelAppCNVs PanelApp GE CNVs bigBed 9 + Genomics England PanelApp CNV Regions 3 2 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/panelApp/cnv.bb\ filter.versionCreated 1\ filterLabel.versionCreated Minimum panel version to display\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields entityName\ longLabel Genomics England PanelApp CNV Regions\ mouseOver Gene: $entityNamePanel: $panelName
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel\ parent panelApp on\ priority 2\ shortLabel PanelApp GE CNVs\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes\ track panelAppCNVs\ type bigBed 9 +\ urls omimGene="https://www.omim.org/entry/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" entityName="https://panelapp.genomicsengland.co.uk/panels/entities/$$"\ visibility pack\ yale_pseudogenes Pseudogenes bigBed 12 + Yale Pseudogenes 3 2 0 0 0 127 127 127 0 0 0
Description
\\ These tracks contain pseudogene predictions and their parents as identified by PseudoPipe.\ PseudoPipe is a homology-based\ computational pipeline that can search a mammalian genome and identify pseudogene sequences\ comprehensively and consistently.\
\\ Pseudogenes are genomic sequences that bear similarity to specific protein-coding genes, but are\ unable to produce functional proteins due to the existence of frameshifts, premature stop codons, or\ other deleterious mutations. They arise from gene duplication or retrotransposition events and are\ important resources in understanding the evolutionary history of genes and genomes.
\ \Display Conventions
\ \This composite track consists of two subtracks: the Pseudogenes track and the Pseudogene\ Parents track.
\\ The Pseudogene Parents track displays parent genes and pseudogenes\ labeled with their HUGO\ IDs, which were derived from Ensembl gene IDs provided by the Gerstein lab after dataset creation. It includes indicators for pseudogenes. \ These indicators do not show pseudogene locations directly but instead indicate how many pseudogenes\ are associated with each gene and link to their genomic regions in the Pseudogenes track.
\\ The Pseudogenes track shows pseudogenes labeled with their parent HUGO ID and colored\ according to pseudogene type. The authors assigned PGOHUMG IDs to genes and PGOHUMT IDs to\ transcripts. Note: Not all PseudoPipe IDs could be mapped back to their original Ensembl\ IDs. In these cases, the gene ID is listed as NA.
\ \ Pseudogene types:\- \
- Unspecified pseudogenes include pseudogenic fragments and protein/chromosome homologies\ \ with high sequence similarity but are too decayed to be reliably classified as processed or\ \ duplicated. \
- Processed pseudogenes (retrotransposed pseudogenes) result from the reverse\ \ transcription of mRNA into DNA, which is then inserted into the genome. These pseudogenes\ \ lack introns, often have small flanking direct repeats, and may retain a 3' polyadenine\ \ tail. PseudoPipe distinguishes them from duplicated pseudogenes by a combination of these\ \ features, with the emphasis on the evidence of ancient introns. \
- Unprocessed pseudogenes (duplicated pseudogenes) arise from genomic DNA duplication or\ \ unequal crossing-over. They often retain the original exon-intron structures of the\ \ functional genes, although sometimes incompletely. \
Pseudogene Parents track
\Each parent gene is shown with associated pseudogenes represented as grey blocks. These blocks\ do not reflect actual pseudogene locations but rather indicate the count of pseudogenes linked to\ the gene.\
\- \
- purple - parent gene \
- grey - pseudogene indicators \
\ If a parent gene has four grey blocks beneath it, this indicates the presence of four pseudogenes\ elsewhere in the genome. Hovering over an item displays the gene type, ID (Ensembl transcript ID\ or PseudoPipe transcript ID), and the genome position of the gene or pseudogene, with a link to\ that genomic region.\
\ \Pseudogenes track
\Pseudogenes are colored by type.
\- \
- orange - unspecified pseudogene \
- blue - unprocessed pseudogene \
- olive green - processed pseudogene \
\ Hovering over a pseudogene item shows the pseudogene type, parent HUGO gene symbol, and the Ensembl\ parent transcript ID, which links to the genome position of the parent gene.
\ \Methods
\\ The PseudoPipe pipeline identifies pseudogenes through a series of steps. It first uses BLAST to\ rapidly cross-reference potential parent proteins against the intergenic regions of the genome. The\ resulting raw hits are then processed by removing redundancies, clustering neighboring sequences,\ and aligning each cluster with a unique parent gene. Finally, pseudogenes are classified based on a\ combination of criteria, including homology, intron-exon structure, and the presence of stop codons\ or frameshifts. This method is designed to detect pseudogenes that are unable to be translated into\ proteins.
\\ These tracks were generated using a Bash script that processes a GTF file with pseudogene\ annotations by removing duplicates, correcting overlapping exons, and converting the data to BED\ format with pseudoPipeToBed.py. This script extracts gene and transcript IDs, merges overlapping\ exons, assigns colors based on pseudogene type, and outputs a BED file with gene and parent\ annotations. PseudoPipeParents.py then links pseudogenes to their functional genes by determining\ parent gene coordinates, updating pseudogene entries with interactive browser links and generating a\ parent BED file. The final data are formatted into pseudoPipePgenes.bb and pseudoPipeParents.bb BigBed\ files. The detailed documentation (makeDoc) and \ Python scripts are available in our GitHub repository.\
\ \Data Access
\The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ The data may also be explored interactively using our\ REST API.
\For automated download and analysis, the genome annotation is stored at UCSC in bigBed files\ that can be downloaded from the\ download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system.
\\ Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/hg38/pseudogenes/pseudoPipePgenes.bb -chrom=chr21 -start=0 -end=10000000 stdout\ \ \Credits
\Thanks to the Gerstein lab at Yale University for making this data available, and to Cristina\ Sisu for providing data in GTF format with parent annotations.
\ \References
\\ Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M.\ \ PseudoPipe: an automated pseudogene identification pipeline.\ Bioinformatics. 2006 Jun 15;22(12):1437-9.\ PMID: 16574694\
\ genes 1 bigDataUrl /gbdb/hg38/pseudogenes/pseudoPipePgenes.bb\ defaultLabelFields pgenehugo\ html pseudogenes.html\ itemRgb on\ labelFields pgenehugo\ labelSeparator " "\ longLabel Yale Pseudogenes\ mouseOver Pseudogene type: ${pgeneType}Parent gene ID: ${parenthugo}
Parent transcript ID: ${enstxurl}\ parent pseudogenes\ priority 2\ searchIndex pgenehugo,name,parenthugo,ppgene,pptx,pensgene,penstx,ensgene,_enstx,ensprot\ searchTrix /gbdb/hg38/pseudogenes/pseudoPipePgenes.ix\ shortLabel Pseudogenes\ track yale_pseudogenes\ type bigBed 12 +\ visibility pack\ pTriplo pTriplosensitivity bigBed 9 + 2 Probability of triplosensitivity 3 2 0 0 0 127 127 127 0 0 0 https://www.deciphergenomics.org/search?q=$$ phenDis 1 bigDataUrl /gbdb/hg38/bbi/dosageSensitivityCollins2022/pTriploDosageSensitivity.bb\ filter.pTriplo 0\ filterByRange.pTriplo on\ filterLimits.pTriplo 0:1\ itemRgb on\ longLabel Probability of triplosensitivity\ mouseOver Gene: $name
pTriplo: $pTriplo
Ensembl ID: $ensGene\ parent dosageSensitivity on\ shortLabel pTriplosensitivity\ showCfg on\ track pTriplo\ type bigBed 9 + 2\ url https://www.deciphergenomics.org/search?q=$$\ urlLabel Link to DECIPHER\ visibility pack\ hmaSummaryPutEnhancers Putative Enhancers bigBed 9 . Methylation Atlas: Putative enhancers from unmethylated regions 1 2 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg38/dnaMethylationAtlas/hmaSummaryPutEnhancers.bb\ filterLabel.name Cell/Tissue Type\ filterValues.name Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Breast-Basal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Gastric-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Bron,Neuron,Oligodend,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Small-Int-Ep,Thyroid-Ep\ itemRgb on\ longLabel Methylation Atlas: Putative enhancers from unmethylated regions\ parent humanMethylationAtlasSummary on\ priority 2\ shortLabel Putative Enhancers\ track hmaSummaryPutEnhancers\ type bigBed 9 .\ visibility dense\ recombPat Recomb. deCODE Pat bigWig Recombination rate: deCODE Genetics, paternal 2 2 0 130 0 127 192 127 0 0 0
Description
\\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\
\ \This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\
\ \Display Conventions and Configuration
\\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\
\ \\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\
\ \Methods
\\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\
\ \The 1000 Genomes genetic map is based on the
As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\
\ \References
\\
1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\
Hurles ME, McVean GA.\
\
A map of human genome variation from population-scale sequencing.\
Nature. 2010 Oct 28;467(7319):1061-73.\
PMID: 20981092; PMC:
\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\
\ map 0 bigDataUrl /gbdb/hg38/recombRate/recombPat.bw\ html recombRate2.html\ longLabel Recombination rate: deCODE Genetics, paternal\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 2\ shortLabel Recomb. deCODE Pat\ track recombPat\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeqCurated RefSeq Curated genePred NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*) 1 2 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, curated subset (NM_*, NR_*, NP_* or YP_*)\ parent refSeqComposite on\ priority 2\ shortLabel RefSeq Curated\ track ncbiRefSeqCurated\ ReMapTFs ReMap ChIP-seq bigBed 9 + ReMap Atlas of Regulatory Regions 4 2 0 0 0 127 127 127 0 0 0Description
\\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \
\ \\ Below is a schematic diagram of the types of regulatory regions: \
- \
- ReMap 2022 Atlas (all peaks for each analyzed data set) \
- ReMap 2022 Non-redundant peaks (merged similar target) \
- ReMap 2022 Cis Regulatory Modules \
\
\
Display Conventions and Configuration
\- \
- \ Each transcription factor follows a specific RGB color.\ \
- \ ChIP-seq peak summits are represented by vertical bars.\ \
- \
Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\
GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\
a particular biological condition (e.g. MCF-7).\
Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\ \
- \
Atha: The data set is defined as a ChIP-seq experiment in a given series\
(e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\
condition (i.e. ecotype, tissue type, experimental conditions; e.g.\
Col-0_seedling_3d-6BA-4h).\
Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\ \
Methods
\\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \
\Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \
\ \\
\
GEO & ArrayExpress
\\
Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\
ArrayExpress (AE) databases. For GEO, the query\
\
'('chip seq' OR 'chipseq' OR\
'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\
sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\
\
was used to return a list of all potential data sets to analyze, which were then manually \
assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\
Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\
were excluded.\
ENCODE
\\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\
- \
- Assay: "ChIP-seq" \
- Organism: "Homo sapiens" \
- Target of assay: "transcription factor" \
- Available data: "fastq" on 2016 June 21st \
ChIP-seq processing
\\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\
\ \ \Quality assessment
\\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\
\\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\
\ \ \ \Data Access
\\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\
\ \References
\ \\
Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\
\
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\
seq experiments.\
Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\
PMID: 29126285; PMC:
\
Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\
F, Ballester B.\
\
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\
DNA-binding sequencing experiments.\
Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\
PMID: 31665499; PMC:
\
Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\
\
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\
landscape.\
Nucleic Acids Res. 2015 Feb 27;43(4):e27.\
PMID: 25477382; PMC:
\
Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\
\
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\
integrative analysis of DNA-binding sequencing experiments.\
Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\
PMID: 34751401; PMC:
Description
\\ The Human miRNA Tissue Atlas is a\ catalog of tissue-specific microRNA (miRNA) expression across 62 tissues. This track contains\ quantile normalized miRNA expression data sampled from two individuals and mapped to\ miRBase v21 coordinates. The track contains two subtracks, one\ for each individual sampled.
\ \\ The Tissue Specificity Index (TSI) is analogous to the "tau" value for mRNA expression,\ and is calculated as described in the\ \ associated publication. Values closer to 0 indicate miRNAs expressed in many or all tissues,\ while values closer to 1 indicate miRNAs expressed only in a specific tissue or tissues. To\ browse miRNAs by TSI value, please see the\ miRNA Tissue Atlas.
\ \Display Conventions and Configuration
\\ This track is formatted as a barChart track,\ similar to the GTEx or the\ TCGA Cancer Expression tracks, where the\ heights of each bar indicate the expression value for the miRNA in a specific tissue. The tissues\ sampled are described in the table below:\
\| Bar Color | Sample 1 | Sample 2 |
| Adipocyte | Adipocyte | |
| Artery | Artery | |
| Colon | Colon | |
| Dura mater | Dura mater | |
| Kidney | Kidney | |
| Liver | Liver | |
| Lung | Lung | |
| Muscle | Muscle | |
| Myocardium | Myocardium | |
| Skin | Skin | |
| Spleen | Spleen | |
| Stomach | Stomach | |
| Testis | Testis | |
| Thyroid | Thyroid | |
| Small intestine | ||
| Bone | ||
| Gallbladder | ||
| Fascia | ||
| Bladder | ||
| Epididymis | ||
| Tunica albuginea | ||
| Nervus intercostalis | ||
| Arachnoid mater | ||
| Brain | ||
| Small intestine duodenum | ||
| Small intestine jejunum | ||
| Pancreas | ||
| Kidney glandula suprarenalis | ||
| Kidney cortex renalis | ||
| Esophagus | ||
| Prostate | ||
| Bone marrow | ||
| Vein | ||
| Lymph node | ||
| Nerve not specified | ||
| Pleura | ||
| Pituitary gland | ||
| Spinal cord | ||
| Thalamus | ||
| Brain white matter | ||
| Nucleus caudatus | ||
| Kidney medulla renalis | ||
| Brain gray_matter | ||
| Cerebral cortex temporal | ||
| Cerebral cortex frontal | ||
| Cerebral cortex occipital | ||
| Cerebellum |
\ The 14 shared tissues sampled across both individuals are presented in the same order for easier comparison.\
\ \Data Access
\\ The underlying expression matrix and TSI values can be obtained from the\ miRNA tissue atlas website, in the\ data_matrix_quantile.txt and tsi_quantile.csv files.\
\ \References
\\
Ludwig N, Leidinger P, Becker K, Backes C, Fehlmann T, Pallasch C, Rheinheimer S, Meder B,\
Stähler C, Meese E et al.\
\
Distribution of miRNA expression across human tissues.\
Nucleic Acids Res. 2016 May 5;44(8):3865-77.\
PMID: 26921406; PMC:
Description
\ \\ The "Splicing Impact" container track contains tracks showing the predicted or validated effect of variants\ close to splice sites.\
\ \AbSplice
\AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner,\ Çelik et al., 2023. This track displays precomputed AbSplice scores for all possible\ single-nucleotide variants genome-wide. The scores represent the probability that a given variant\ causes aberrant splicing in a given tissue.\ AbSplice scores\ can be computed from VCF files and are based on quantitative tissue-specific splice site annotations\ (SpliceMaps).\ While SpliceMaps can be generated for any tissue of interest from a cohort of RNA-seq samples, this\ track includes 49 tissues available from the\ Genotype-Tissue\ Expression (GTEx) dataset.\
\ \SpliceAI Variants
\SpliceAI is an open-source deep\ learning splicing prediction algorithm that can predict splicing alterations caused by DNA variations.\ To score variants, the spliceAI algorithm is run on the genome sequence itself and scores each\ nucleotide for the probability that it is a donor or acceptor site, on both the\ forward and the reverse strand. Then variants are added to the sequence and the new sequence is\ scored. Variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\ SpliceAI was developed at Illumina; a\ lookup tool\ is provided by the Broad institute. \
\ \SpliceAI Wildtype
\\ This SpliceAI "Wildtype" container track shows the scores for the genome sequence itself,\ without variants, from predicted splice donor (5' intron boundaries) and splice acceptor\ (3' intron boundaries) sites. Predictions are strand-specific, with separate subtracks for the\ plus and minus strands. These tracks are useful in combination with the variants track for\ evaluating new transcript models. They can be used to assess potential exon boundaries or\ possible splice acceptor sites.
\ \ Why are some variants not scored by SpliceAI?\\ SpliceAI only annotates variants within genes defined by the gene\ annotation file. Additionally, SpliceAI does not annotate variants if they are close to chromosome\ ends (5kb on either side), deletions of length greater than twice the input parameter -D, or\ inconsistent with the reference fasta file.\
\ \ What are the differences between masked and unmasked tracks?\\ The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\ and weakening unannotated splice sites, which are typically much less pathogenic than weakening\ annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\ changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\ splicing analysis and masked tracks for variant interpretation.\
\ \SpliceVarDB
\SpliceVarDB is an online database consolidating over 50,000 variants assayed\ for their effects on splicing in over 8,000 human genes. The authors evaluated\ over 500 published data sources and established a spliceogenicity scale to\ standardize, harmonize, and consolidate variant validation data generated by a\ range of experimental protocols. Genes and variant locations were obtained using\ GENCODE v44. Splice regions were calculated as specific distances from the closest\ canonical exon, including 5' and 3' untranslated regions (UTRs). The\ database is available at\ splicevardb.org.
\ \Display Conventions and Configuration
\ \AbSplice
\The AbSplice score is a probability estimate of how likely aberrant splicing of some sort takes\ place in a given tissue. The authors suggest three cutoffs which are represented by color in the track.\
\ \- \
- High (red) - \ An AbSplice score over 0.2 indicates a high likelihood of aberrant splicing in at least one tissue. \
- Medium (orange) - \ A score between 0.05 and 0.2 indicates a medium likelihood. \
- Low (blue) - \ A score between 0.01 and 0.05 indicates a low likelihood. \
- Scores below 0.01 are not displayed. \
\ Mouseover on items shows the gene name, maximum score, and tissues that had this score. Clicking on\ any item brings up a table with scores for all 49 GTEX tissues.\
\ \SpliceAI
\\ Variants are colored according to Walker et al. 2023 splicing impact:\
\- \
- Predicted impact on splicing: Score >= 0.2 \
- Not informative: Score < 0.2 and > 0.1 \
- No impact on splicing: Score <= 0.1 \
\ The scores range from 0 to 1 and can be interpreted as the\ probability of the variant being splice-altering. In the paper, a detailed characterization is\ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \SpliceAI Wildtype
\\ These tracks are in bigWig format. The signal height represents the SpliceAI probability score.\ This track may be configured in a variety of ways to highlight different aspects of the displayed\ information. Click the "Graph configuration help" link for an explanation of configuration\ options.
\ \SpliceVarDB
\According to the strength of their supporting\ evidence, variants were classified as "splice-altering" (~25%), "not\ splice-altering" (~25%), and "low-frequency splice-altering" (~50%), which\ correspond to weak or indeterminate evidence of spliceogenicity. 55% of the\ splice-altering variants in SpliceVarDB are outside the canonical splice sites\ (5.6% are deep intronic). The data is shown as lollipop plots that can be clicked, \ the details page then shows a link to SpliceVarDB with full details.\
\ \The classification thresholds primarily follow those established by the original study.\ However, most studies only defined criteria for splice-altering variants and did not define\ criteria for variants that resulted in normal splicing. The authors implemented stringent\ thresholds to define the normal category and ensure a high-quality set of control variants.\ Variants that did not meet these criteria were classified as low-frequency splice-altering\ variants with a wide range of sub-optimal scores. Variants that fell between the normal and\ splice-altering classifications were placed into a low-frequency splice-altering category.\ In situations where a variant was validated multiple times, if at least one validation\ returned splice-altering and another returned normal, the "conflicting" category\ was applied.\
\ \\ The lollipop plots are color-coded based on the score value, which corresponds\ to the following classifications:\
- \
- 3 - Splice-altering \
- 2 - Low-frequency \
- 1 - Normal \
- 0 - Conflicting \
Methods
\AbSplice
\Data was converted from the files (AbSplice_DNA_ hg38 _snvs_high_scores.zip) provided by the authors\ at zenodo.org. Files in the\ score_cutoff=0.01 directory were concatenated. To convert the data to bigBed format, scores and\ their tissues were selected from the AbSplice_DNA fields and maximum scores, and then calculated\ using a custom Python script, which can be found in the\ \ makeDoc from our GitHub repository.
\ \SpliceAI
\\
The data were downloaded from \
Since most of the values are 0 or almost 0, we selected only those variants\
with a score equal to or greater than 0.02.\
\
The complete processing of this track can be found in the \
makedoc.\
Data was provided by the Michael Hiller lab. SpliceAI was run on the entire genome reference\
chromosomes. Since the algorithm does not know where transcripts start or end, the scores\
can differ from those on other websites, especially for splice sites before the last exon or\
around the first exon. The data was converted by Patricia Sullivan from SpliceVarDB to\
bigLolly format, and the UCSC\
Browser staff downloaded it for display.\
Precomputed AbSplice-DNA scores in all 49 GTEx tissues are available at\
\
Zenodo. \
The SpliceAI data is not available for download from the Genome Browser.\
The raw data can be found directly on\
Illumina.\
FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are\
made available by Illumina only for academic or not-for-profit research only.\
By accessing the SpliceAI data, you acknowledge and agree that you may only\
use this data for your own personal academic or not-for-profit research only,\
and not for any other purposes. You may not use this data for any for-profit,\
clinical, or other commercial purpose without obtaining a commercial license\
from Illumina, Inc.\
\
The raw data can be explored interactively with the Table Browser\
or the Data Integrator. For automated analysis, the data may\
be queried from our REST API. \
For automated download and analysis, the genome annotation is stored in a bigBed or a bigWig file\
that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools, e.g.\
Thanks to Illumina for making SpliceAI available, both the model and the precomputed data files. Thanks to Francois Lecoquierre from the University of Oxford, Jean-Madeleine de Sainte Agathe\
from Institut Pasteur Paris, and Michael Hiller from the Senckenberg Museum Frankfurt for\
suggesting and then creating the SpliceAI Wildtype annotations. Thanks to Nils Wagner for helpful comments and suggestions for the AbSplice track. Thanks to the SpliceVarDB team for converting the data into our data formats. \
Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\
Arbelaez J, Cui W, Schwartz GB et al.\
\
Predicting Splicing from Primary Sequence with Deep Learning.\
Cell. 2019 Jan 24;176(3):535-548.e24.\
PMID: 30661751\
\
Sullivan PJ, Quinn JMW, Wu W, Pinese M, Cowley MJ.\
\
SpliceVarDB: A comprehensive database of experimentally validated human splicing variants.\
Am J Hum Genet. 2024 Oct 3;111(10):2164-2175.\
PMID: 39226898; PMC: \
Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J.\
\
Aberrant splicing prediction across human tissues.\
Nat Genet. 2023 May;55(5):861-870.\
PMID: 37142848\
\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC: \
The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\
cell lines, and tissues to produce a comprehensive overview of gene expression across the human\
body by using single molecule sequencing.\
Items in this track are colored according to their strand orientation. Blue\
indicates alignment to the negative strand, and red indicates\
alignment to the positive strand.\
Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\
(Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\
requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\
optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\
et al. 2011).\
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain\
\
\
SpliceAI Wildtype
\
SpliceVarDB
\
Data Access
\
\
\
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/splicevardb/SVADB.bb\
\ -chrom=chr21 -start=0 -end=100000000 stdout\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500\
\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/spliceAi/wildtype/spliceAiAcceptorMinus.bw\
\ stdout\
\
\
These tools can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.Credits
\
\
References
\
Splice donor: $donor
Splice acceptor: $acceptor
Intron size: $size bp
Strand: $strand\
parent recount3\
priority 2\
shortLabel TCGA\
track recount3_tcga\
TotalCounts_Rev Total counts of CAGE reads (rev) bigWig Total counts of CAGE reads reverse 2 2 0 0 255 127 127 255 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ctssTotalCounts.rev.bw\
color 0,0,255\
dataVersion FANTOM5 reprocessed7\
longLabel Total counts of CAGE reads reverse\
parent Total_counts_multiwig\
shortLabel Total counts of CAGE reads (rev)\
subGroups category=total strand=reverse\
track TotalCounts_Rev\
type bigWig\
pliByTranscript Transcript LoF v2 bigBed 12 + gnomAD Predicted Loss of Function Constraint Metrics By Transcript (LOEUF and pLI) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/pliByTranscript.bb\
filter._pli 0:1\
filterByRange._pli on\
filterLabel._pli Show only items between this pLI range\
itemRgb on\
labelFields name,geneName\
longLabel gnomAD Predicted Loss of Function Constraint Metrics By Transcript (LOEUF and pLI) v2.1.1\
mouseOver LOEUF: $_loeuf
pLI: $_pli
$synonymous
$pLoF\
parent constraintV2 off\
priority 2\
searchIndex name,geneName\
shortLabel Transcript LoF v2\
subGroups view=v2\
track pliByTranscript\
type bigBed 12 +\
url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1\
urlLabel View this Transcript on the gnomAD browser\
pliByTranscriptV4 Transcript LoF v4 bigBed 12 + gnomAD Predicted Loss of Function Constraint Metrics By Transcript (LOEUF and pLI) v4 0 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/pliByTranscript.v4.bb\
filter._pli 0:1\
filterByRange._pli on\
filterLabel._pli Show only items between this pLI range\
itemRgb on\
labelFields name,geneName\
longLabel gnomAD Predicted Loss of Function Constraint Metrics By Transcript (LOEUF and pLI) v4\
mouseOver LOEUF: $_loeuf
pLI: $_pli
$synonymous
$pLoF\
parent constraintV4\
priority 2\
searchIndex name,geneName\
shortLabel Transcript LoF v4\
subGroups view=v4\
track pliByTranscriptV4\
type bigBed 12 +\
url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4\
urlLabel View this Transcript on the gnomAD browser\
pliByTranscriptV4_1 Transcript LoF v4.1 bigBed 12 + gnomAD Predicted Loss of Function Constraint Metrics By Transcript (LOEUF and pLI) v4.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/pliByTranscript.v4.1.bb\
filter._pli 0:1\
filterByRange._pli on\
filterLabel._pli Show only items between this pLI range\
itemRgb on\
labelFields name,geneName\
longLabel gnomAD Predicted Loss of Function Constraint Metrics By Transcript (LOEUF and pLI) v4.1\
mouseOver LOEUF: $_loeuf
pLI: $_pli
$synonymous
$pLoF\
parent constraintV4_1\
priority 2\
searchIndex name,geneName\
shortLabel Transcript LoF v4.1\
subGroups view=v4_1\
track pliByTranscriptV4_1\
type bigBed 12 +\
url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4\
urlLabel View this Transcript on the gnomAD browser\
missenseByTranscript Transcript Missense v2 bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v2.1.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/missenseByTranscript.bb\
filter._zscore -20:11\
filterByRange._zscore on\
filterLabel._zscore Show only items between this Z-score range\
labelFields name,geneName\
longLabel gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v2.1.1\
mouseOver Z: $_zscore
$synonymous
$missense\
parent constraintV2 off\
priority 2\
searchIndex name,geneName\
shortLabel Transcript Missense v2\
subGroups view=v2\
track missenseByTranscript\
type bigBed 12 +\
url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r2_1\
urlLabel View this Transcript on the gnomAD browser\
missenseByTranscriptV4 Transcript Missense v4 bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v4 0 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/missenseByTranscript.v4.bb\
filter._zscore -20:11\
filterByRange._zscore on\
filterLabel._zscore Show only items between this Z-score range\
labelFields name,geneName\
longLabel gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v4\
mouseOver Z: $_zscore
$synonymous
$missense\
parent constraintV4\
priority 2\
searchIndex name,geneName\
shortLabel Transcript Missense v4\
subGroups view=v4\
track missenseByTranscriptV4\
type bigBed 12 +\
url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4\
urlLabel View this Transcript on the gnomAD browser\
missenseByTranscriptV4_1 Transcript Missense v4.1 bigBed 12 + gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v4.1 3 2 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4 varRep 1 bigDataUrl /gbdb/hg38/gnomAD/pLI/missenseByTranscript.v4.1.bb\
filter._zscore -20:11\
filterByRange._zscore on\
filterLabel._zscore Show only items between this Z-score range\
labelFields name,geneName\
longLabel gnomAD Predicted Missense Constraint Metrics By Transcript (Z-scores) v4.1\
mouseOver Z: $_zscore
$synonymous
$missense\
parent constraintV4_1\
priority 2\
searchIndex name,geneName\
shortLabel Transcript Missense v4.1\
subGroups view=v4_1\
track missenseByTranscriptV4_1\
type bigBed 12 +\
url https://gnomad.broadinstitute.org/transcript/$$?dataset=gnomad_r4\
urlLabel View this Transcript on the gnomAD browser\
unipAliTrembl TrEMBL Aln. bigPsl UCSC alignment of TrEMBL proteins to genome 0 2 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\
baseColorTickColor contrastingColor\
baseColorUseCds given\
bigDataUrl /gbdb/hg38/uniprot/unipAliTrembl.bb\
indelDoubleInsert on\
indelQueryInsert on\
itemRgb on\
labelFields name,acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt\
longLabel UCSC alignment of TrEMBL proteins to genome\
mouseOver UniProt record accession: $acc
Protein Name: $protFullNames
UniProt status: $status
\
parent uniprot off\
priority 2\
searchIndex name,acc\
shortLabel TrEMBL Aln.\
showDiffBasesAllScales on\
skipFields isMain\
track unipAliTrembl\
type bigPsl\
urls acc="https://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" refseq="https://www.ncbi.nlm.nih.gov/nuccore/$$" refSeqProt="https://www.ncbi.nlm.nih.gov/protein/$$" ncbiGene="https://www.ncbi.nlm.nih.gov/gene/$$" entrezGene="https://www.ncbi.nlm.nih.gov/gene/$$" ensGene="https://www.ensembl.org/Gene/Summary?g=$$"\
visibility hide\
TSS_activity_read_counts TSS activity - read counts bigWig FANTOM5: TSS activity per sample read counts 0 2 0 0 0 127 127 127 0 0 0 Description
\
Display Conventions and Configuration
\
\
Methods
\
Protocol
\
\
\
Samples
\Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\
- \
- Primary cell \
- Tissue \
- Cell Line \
- Time course \
- Fractionation \
TSS peaks
\TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\
- \
- TSS (CAGE) peaks\
- \
- the robust peaks \
\
- TSS summary profiles\
- \
- Total counts and TPM (tags per million) in all the samples \
- Maximum counts and TPM among the samples \
\
TSS activity
\\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\
\ \- \
- Categories of individual samples \
- - Cell Line hCAGE \
- - Cell Line LQhCAGE \
- - fractionation hCAGE \
- - Primary cell hCAGE \
- - Primary cell LQhCAGE \
- - Time course hCAGE \
- - Tissue hCAGE \
Data Access
\\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.
\ \Credits
\ \\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.
\ \References
\\
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\
Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\
\
A promoter-level mammalian expression atlas.\
Nature. 2014 Mar 27;507(7493):462-70.\
PMID: 24670764; PMC:
\
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\
N, Daub CO et al.\
\
Unamplified cap analysis of gene expression on a single-molecule sequencer.\
Genome Res. 2011 Jul;21(7):1150-9.\
PMID: 21596820; PMC:
\
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\
Ishikawa-Kato S et al.\
\
Gateways to the FANTOM5 promoter level mammalian expression atlas.\
Genome Biol. 2015 Jan 5;16(1):22.\
PMID: 25723102; PMC:
Description
\ \CpG islands are associated with genes, particularly housekeeping\ genes, in vertebrates. CpG islands are typically common near\ transcription start sites and may be associated with promoter\ regions. Normally a C (cytosine) base followed immediately by a \ G (guanine) base (a CpG) is rare in\ vertebrate DNA because the Cs in such an arrangement tend to be\ methylated. This methylation helps distinguish the newly synthesized\ DNA strand from the parent strand, which aids in the final stages of\ DNA proofreading after duplication. However, over evolutionary time,\ methylated Cs tend to turn into Ts because of spontaneous\ deamination. The result is that CpGs are relatively rare unless\ there is selective pressure to keep them or a region is not methylated\ for some other reason, perhaps having to do with the regulation of gene\ expression. CpG islands are regions where CpGs are present at\ significantly higher levels than is typical for the genome as a whole.
\ \\ The unmasked version of the track displays potential CpG islands\ that exist in repeat regions and would otherwise not be visible\ in the repeat masked version.\
\ \\ By default, only the masked version of the track is displayed. To view the\ unmasked version, change the visibility settings in the track controls at\ the top of this page.\
\ \Methods
\ \CpG islands were predicted by searching the sequence one base at a\ time, scoring each dinucleotide (+17 for CG and -1 for others) and\ identifying maximally scoring segments. Each segment was then\ evaluated for the following criteria:\ \
- \
\
- GC content of 50% or greater \ \
- length greater than 200 bp \ \
- ratio greater than 0.6 of observed number of CG dinucleotides to the expected number on the \ \ basis of the number of Gs and Cs in the segment \
\ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\
\ \The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \
Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)\ \ where N = length of sequence.\
\ The calculation of the track data is performed by the following command sequence:\
\
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
| cpg_lh /dev/stdin 2> cpg_lh.err \\\
| awk '{$2 = $2 - 1; width = $3 - $2; printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
| sort -k1,1 -k2,2n > cpgIsland.bed\
\
The unmasked track data is constructed from\
twoBitToFa -noMask output for the twoBitToFa command.\
\
\
Data access
\\ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\\ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\
\ \Credits
\ \This track was generated using a modification of a program developed by G. Micklem and L. Hillier \ (unpublished).
\ \References
\ \\ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\
\ regulation 1 html cpgIslandSuper\ longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)\ parent cpgIslandSuper hide\ priority 2\ shortLabel Unmasked CpG\ track cpgIslandExtUnmasked\ cons241way Zoonomia 241 Placent bed 4 Zoonomia Alignment - 241 Placental Mammal Genomes aligned by the Zoonomia Project with Cactus 0 2 0 0 0 127 127 127 0 0 0\ Downloads for data in this track are available:\
- \
- \ Cactus alignments (MAF format), and phylogenetic trees, and PhyloP conservation (WIG and bigWig format)\
Description
\ \Warning: Unlike other alignment tracks on the genome browser, this one does not show\ insertions in the query genomes. Also, all other alignment tracks show one query\ genome sequence for each target genome sequence, but in this track, each\ target genome sequence can be aligned to multiple query genome sequences.\ Only the first sequence is shown on the genome browser itself, the others are shown on the details page,\ when one clicks on the alignment. If you are interested in this track and want\ these shortcomings to be fixed, please contact us.\
\ \\ This track shows multiple alignments of 241 vertebrate\ species and measurements of evolutionary conservation\ from the Zoonomia Project.\
\ \\ The multiple alignments were generated using the\ Cactus comparative genomics alignment system.\ Cactus produces reference-free, whole-genome multiple alignments.\
\ \ \
\ The base-wise conservation scores are computed using phyloP from the\ PHAST package, for all species.\ This version was prepared by Michael Dong (Uppsala U) with an improved neutral\ model incorporating better versions of ancestral repeats.\
\ \\ For genome assemblies not available in the genome browser, there are\ alternative assembly hub genome browsers. Missing sequence in any assembly is\ highlighted in the track display by regions of yellow when zoomed out and by\ Ns when displayed at base level (see Gap Annotation, below).
\\
\\ \\
\ count \common \
nameCLADE \group \scientific \
namesequencing \
sourceNCBI \
assemblyspecies \
status\ 1 \Cape golden mole \AFROSORICIDA \Chrysochloridae \Chrysochloris asiatica \1. Zoonomia \GCA_004027935.1 \LC \\ 2 \Small madagascar hedgehog \AFROSORICIDA \Tenrecidae \Echinops telfairi \2. Existing assembly \GCF_000313985.1 \LC \\ 3 \Talazac's shrew tenrec \AFROSORICIDA \Tenrecidae \Microgale talazaci \1. Zoonomia \GCA_004026705.1 \LC \\ 4 \Cheetah \CARNIVORA \Felidae \Acinonyx jubatus \2. Existing assembly \GCF_001443585.1 \CR \\ 5 \Giant panda \CARNIVORA \Ursidae \Ailuropoda melanoleuca \2. Existing assembly \GCA_002007445.1 \VU \\ 6 \Lesser panda \CARNIVORA \Ailuridae \Ailurus fulgens \2. Existing assembly \GCA_002007465.1 \EN \\ 7 \Domestic dog \CARNIVORA \Canidae \Canis lupus familiaris \2. Existing assembly \GCF_000002285.3 \LC \\ 8 \Domestic dog (village dog) \CARNIVORA \Canidae \Canis lupus familiaris \1. Zoonomia \GCA_004027395.1 \LC \\ 9 \Fossa \CARNIVORA \Eupleridae \Cryptoprocta ferox \1. Zoonomia \GCA_004023885.1 \VU \\ 10 \Sea otter \CARNIVORA \Mustelidae \Enhydra lutris \2. Existing assembly \GCF_002288905.1 \EN \\ 11 \Domestic cat \CARNIVORA \Felidae \Felis catus \2. Existing assembly \GCF_000181335.2 \LC \\ 12 \Black-footed cat \CARNIVORA \Felidae \Felis nigripes \1. Zoonomia \GCA_004023925.1 \VU \\ 13 \Dwarf mongoose \CARNIVORA \Herpestidae \Helogale parvula \1. Zoonomia \GCA_004023845.1 \LC \\ 14 \Striped hyena \CARNIVORA \Hyaenidae \Hyaena hyaena \1. Zoonomia \GCA_004023945.1 \NT \\ 15 \Weddell seal \CARNIVORA \Phocidae \Leptonychotes weddellii \2. Existing assembly \GCF_000349705.1 \LC \\ 16 \African hunting dog \CARNIVORA \Canidae \Lycaon pictus \2. Existing assembly \GCA_001887905.1 \EN \\ 17 \Honey badger \CARNIVORA \Mustelidae \Mellivora capensis \1. Zoonomia \GCA_004024625.1 \LC \\ 18 \Northern elephant seal \CARNIVORA \Phocidae \Mirounga angustirostris \1. Zoonomia \GCA_004023865.1 \LC \\ 19 \South African banded mongoose \CARNIVORA \Herpestidae \Mungos mungo \1. Zoonomia \GCA_004023785.1 \LC \\ 20 \Domestic ferret \CARNIVORA \Mustelidae \Mustela putorius \2. Existing assembly \GCF_000239315.1 \LC \\ 21 \Hawaiian monk seal \CARNIVORA \Phocidae \Neomonachus schauinslandi \2. Existing assembly \GCA_002201575.1 \EN \\ 22 \Pacific walrus \CARNIVORA \Odobenidae \Odobenus rosmarus \2. Existing assembly \GCF_000321225.1 \DD \\ 23 \Jaguar \CARNIVORA \Felidae \Panthera onca \1. Zoonomia \GCA_004023805.1 \NT \\ 24 \Leopard \CARNIVORA \Felidae \Panthera pardus \2. Existing assembly \GCA_001857705.1 \VU \\ 25 \Amur tiger \CARNIVORA \Felidae \Panthera tigris \2. Existing assembly \GCF_000464555.1 \EN \\ 26 \Asian palm civet \CARNIVORA \Viverridae \Paradoxurus hermaphroditus \1. Zoonomia \GCA_004024585.1 \LC \\ 27 \Giant otter \CARNIVORA \Mustelidae \Pteronura brasiliensis \1. Zoonomia \GCA_004024605.1 \EN \\ 28 \Puma \CARNIVORA \Felidae \Puma concolor \2. Existing assembly \GCF_003327715.1 \LC \\ 29 \Western spotted skunk \CARNIVORA \Mephitidae \Spilogale gracilis \1. Zoonomia \GCA_004023965.1 \LC \\ 30 \Meerkat \CARNIVORA \Herpestidae \Suricata suricatta \1. Zoonomia \GCA_004023905.1 \LC \\ 31 \Polar bear \CARNIVORA \Ursidae \Ursus maritimus \2. Existing assembly \GCF_000687225.1 \VU \\ 32 \Arctic fox \CARNIVORA \Canidae \Vulpes lagopus \1. Zoonomia \GCA_004023825.1 \LC \\ 33 \California sea lion \CARNIVORA \Otariidae \Zalophus californianus \1. Zoonomia \GCA_004024565.1 \LC \\ 34 \Aoudad \CETARTIODACTYLA \Bovidae \Ammotragus lervia \2. Existing assembly \GCA_002201775.1 \VU \\ 35 \Pronghorn \CETARTIODACTYLA \Antilocapridae \Antilocapra americana \1. Zoonomia \GCA_004027515.1 \LC \\ 36 \Minke whale \CETARTIODACTYLA \Balaenopteridae \Balaenoptera acutorostrata \2. Existing assembly \GCF_000493695.1 \LC \\ 37 \Antarctic minke whale \CETARTIODACTYLA \Balaenopteridae \Balaenoptera bonaerensis \2. Existing assembly \GCA_000978805.1 \DD \\ 38 \Hirola \CETARTIODACTYLA \Bovidae \Beatragus hunteri \1. Zoonomia \GCA_004027495.1 \CR \\ 39 \American bison \CETARTIODACTYLA \Bovidae \Bison bison \2. Existing assembly \GCF_000754665.1 \NT \\ 40 \Zebu cattle \CETARTIODACTYLA \Bovidae \Bos indicus \2. Existing assembly \GCA_000247795.2 \LC \\ 41 \Wild yak \CETARTIODACTYLA \Bovidae \Bos mutus \2. Existing assembly \GCF_000298355.1 \VU \\ 42 \Cattle \CETARTIODACTYLA \Bovidae \Bos taurus \2. Existing assembly \GCF_000003205.7 \LC \\ 43 \Water buffalo \CETARTIODACTYLA \Bovidae \Bubalus bubalis \2. Existing assembly \GCF_000471725.1 \LC \\ 44 \Bactrian camel \CETARTIODACTYLA \Camelidae \Camelus bactrianus \2. Existing assembly \GCF_000767855.1 \LC \\ 45 \Arabian camel \CETARTIODACTYLA \Camelidae \Camelus dromedarius \2. Existing assembly \GCF_000767585.1 \LC \\ 46 \Wild bactrian camel \CETARTIODACTYLA \Camelidae \Camelus ferus \2. Existing assembly \GCF_000311805.1 \CR \\ 47 \Wild goat \CETARTIODACTYLA \Bovidae \Capra aegagrus \2. Existing assembly \GCA_000978405.1 \VU \\ 48 \Goat \CETARTIODACTYLA \Bovidae \Capra hircus \2. Existing assembly \GCF_001704415.1 \LC \\ 49 \Chacoan peccary \CETARTIODACTYLA \Tayassuidae \Catagonus wagneri \1. Zoonomia \GCA_004024745.1 \EN \\ 50 \Beluga whale \CETARTIODACTYLA \Monodontidae \Delphinapterus leucas \2. Existing assembly \GCF_002288925.1 \LC \\ 51 \Pere david's deer \CETARTIODACTYLA \Cervidae \Elaphurus davidianus \2. Existing assembly \GCA_002443075.1 \CR \\ 52 \Grey whale \CETARTIODACTYLA \Eschrichtiidae \Eschrichtius robustus \1. Zoonomia \GCA_004363415.1 \LC \\ 53 \North Pacific right whale \CETARTIODACTYLA \Balaenidae \Eubalaena japonica \1. Zoonomia \GCA_004363455.1 \EN \\ 54 \Giraffe \CETARTIODACTYLA \Giraffidae \Giraffa tippelskirchi \2. Existing assembly \GCA_001651235.1 \VU \\ 55 \Nilgiri tahr \CETARTIODACTYLA \Bovidae \Hemitragus hylocrius \1. Zoonomia \GCA_004026825.1 \EN \\ 56 \Hippopotamus \CETARTIODACTYLA \Hippopotamidae \Hippopotamus amphibius \1. Zoonomia \GCA_004027065.1 \VU \\ 57 \Amazon river dolphin \CETARTIODACTYLA \Iniidae \Inia geoffrensis \1. Zoonomia \GCA_004363515.1 \DD \\ 58 \Pygmy sperm whale \CETARTIODACTYLA \Physeteridae \Kogia breviceps \1. Zoonomia \GCA_004363705.1 \DD \\ 59 \Yangtze river dolphin \CETARTIODACTYLA \Iniidae \Lipotes vexillifer \2. Existing assembly \GCF_000442215.1 \CR \\ 60 \Sowerby's beaked whale \CETARTIODACTYLA \Ziphiidae \Mesoplodon bidens \1. Zoonomia \GCA_004027085.1 \DD \\ 61 \Narwhal \CETARTIODACTYLA \Monodontidae \Monodon monoceros \1. Zoonomia \GCA_004026685.1 \LC \\ 62 \Siberian musk deer \CETARTIODACTYLA \Moschidae \Moschus moschiferus \1. Zoonomia \GCA_004024705.1 \VU \\ 63 \Yangtze finless porpoise \CETARTIODACTYLA \Phocoenidae \Neophocaena asiaeorientalis \2. Existing assembly \GCA_003031525.1 \EN \\ 64 \White-tailed deer \CETARTIODACTYLA \Cervidae \Odocoileus virginianus \2. Existing assembly \GCA_002102435.1 \LC \\ 65 \Okapi \CETARTIODACTYLA \Giraffidae \Okapia johnstoni \2. Existing assembly \GCA_001660835.1 \EN \\ 66 \Killer whale \CETARTIODACTYLA \Delphinidae \Orcinus orca \2. Existing assembly \GCF_000331955.2 \DD \\ 67 \Sheep \CETARTIODACTYLA \Bovidae \Ovis aries \2. Existing assembly \GCF_000298735.2 \LC \\ 68 \Peninsular bighorn sheep \CETARTIODACTYLA \Bovidae \Ovis canadensis cremnobates \1. Zoonomia \GCA_004026945.1 \EN \\ 69 \Chiru \CETARTIODACTYLA \Bovidae \Pantholops hodgsonii \2. Existing assembly \GCF_000400835.1 \NT \\ 70 \Harbor porpoise \CETARTIODACTYLA \Phocoenidae \Phocoena phocoena \1. Zoonomia \GCA_004363495.1 \LC \\ 71 \Indus river dolphin \CETARTIODACTYLA \Platanistidae \Platanista gangetica minor \1. Zoonomia \GCA_004363435.1 \EN \\ 72 \Siberian reindeer \CETARTIODACTYLA \Cervidae \Rangifer tarandus \1. Zoonomia \GCA_004026565.1 \VU \\ 73 \Russian saiga \CETARTIODACTYLA \Bovidae \Saiga tatarica tatarica \1. Zoonomia \GCA_004024985.1 \CR \\ 74 \Pig \CETARTIODACTYLA \Suidae \Sus scrofa \2. Existing assembly \GCF_000003025.5 \LC \\ 75 \Java lesser chevrotain \CETARTIODACTYLA \Tragulidae \Tragulus javanicus \1. Zoonomia \GCA_004024965.1 \DD \\ 76 \Bottlenose dolphin \CETARTIODACTYLA \Delphinidae \Tursiops truncatus \2. Existing assembly \GCA_001922835.1 \LC \\ 77 \Alpaca \CETARTIODACTYLA \Camelidae \Vicugna pacos \2. Existing assembly \GCA_000767525.1 \LC \\ 78 \Cuvier's beaked whale \CETARTIODACTYLA \Ziphiidae \Ziphius cavirostris \1. Zoonomia \GCA_004364475.1 \LC \\ 79 \Tailed tailless bat \CHIROPTERA \Phyllostomidae \Anoura caudifer \1. Zoonomia \GCA_004027475.1 \LC \\ 80 \Jamacian fruit-eating bat \CHIROPTERA \Phyllostomidae \Artibeus jamaicensis \1. Zoonomia \GCA_004027435.1 \LC \\ 81 \Seba's short-tailed bat \CHIROPTERA \Phyllostomidae \Carollia perspicillata \1. Zoonomia \GCA_004027735.1 \LC \\ 82 \Bumblebee bat \CHIROPTERA \Craseonycteridae \Craseonycteris thonglongyai \1. Zoonomia \GCA_004027555.1 \VU \\ 83 \Common vampire bat \CHIROPTERA \Phyllostomidae \Desmodus rotundus \2. Existing assembly \GCA_002940915.2 \LC \\ 84 \Straw-colored fruit bat \CHIROPTERA \Pteropodidae \Eidolon helvum \2. Existing assembly \GCA_000465285.1 \NT \\ 85 \Big brown bat \CHIROPTERA \Vespertilionidae \Eptesicus fuscus \2. Existing assembly \GCF_000308155.1 \LC \\ 86 \Great roundleaf bat \CHIROPTERA \Hipposideridae \Hipposideros armiger \2. Existing assembly \GCA_001890085.1 \LC \\ 87 \Cantor's leaf-nosed bat \CHIROPTERA \Hipposideridae \Hipposideros galeritus \1. Zoonomia \GCA_004027415.1 \LC \\ 88 \Eastern red bat \CHIROPTERA \Vespertilionidae \Lasiurus borealis \1. Zoonomia \GCA_004026805.1 \LC \\ 89 \Long-tongued fruit bat \CHIROPTERA \Pteropodidae \Macroglossus sobrinus \1. Zoonomia \GCA_004027375.1 \LC \\ 90 \Greater false vampire bat \CHIROPTERA \Megadermatidae \Megaderma lyra \1. Zoonomia \GCA_004026885.1 \LC \\ 91 \Hairy big-eared bat \CHIROPTERA \Phyllostomidae \Micronycteris hirsuta \1. Zoonomia \GCA_004026765.1 \LC \\ 92 \Natal long-fingered bat \CHIROPTERA \Vespertilionidae \Miniopterus natalensis \2. Existing assembly \GCF_001595765.1 \LC \\ 93 \Common bent-wing bat \CHIROPTERA \Vespertilionidae \Miniopterus schreibersii \1. Zoonomia \GCA_004026525.1 \NT \\ 94 \Ghost-faced bat \CHIROPTERA \Mormoopidae \Mormoops blainvillei \1. Zoonomia \GCA_004026545.1 \LC \\ 95 \Ashy-gray tube-nosed bat \CHIROPTERA \Vespertilionidae \Murina feae \1. Zoonomia \GCA_004026665.1 \LC \\ 96 \Brandt's bat \CHIROPTERA \Vespertilionidae \Myotis brandtii \2. Existing assembly \GCF_000412655.1 \LC \\ 97 \David's myotis bat \CHIROPTERA \Vespertilionidae \Myotis davidii \2. Existing assembly \GCF_000327345.1 \LC \\ 98 \Little brown bat \CHIROPTERA \Vespertilionidae \Myotis lucifugus \2. Existing assembly \GCF_000147115.1 \LC \\ 99 \Greater mouse-eared bat \CHIROPTERA \Vespertilionidae \Myotis myotis \1. Zoonomia \GCA_004026985.1 \LC \\ 100 \Greater bulldog bat \CHIROPTERA \Noctilionidae \Noctilio leporinus \1. Zoonomia \GCA_004026585.1 \LC \\ 101 \Common pipistrelle \CHIROPTERA \Vespertilionidae \Pipistrellus pipistrellus \1. Zoonomia \GCA_004026625.1 \LC \\ 102 \Parnell's mustached bat \CHIROPTERA \Mormoopidae \Pteronotus parnellii \2. Existing assembly \GCA_000465405.1 \LC \\ 103 \Black flying fox \CHIROPTERA \Pteropodidae \Pteropus alecto \2. Existing assembly \GCF_000325575.1 \LC \\ 104 \Large flying fox \CHIROPTERA \Pteropodidae \Pteropus vampyrus \2. Existing assembly \GCF_000151845.1 \NT \\ 105 \Chinese rufous horseshoe bat \CHIROPTERA \Rhinolophidae \Rhinolophus sinicus \2. Existing assembly \GCA_001888835.1 \LC \\ 106 \Egyptian fruit bat \CHIROPTERA \Pteropodidae \Rousettus aegyptiacus \1. Zoonomia \GCA_004024865.1 \LC \\ 107 \Mexican free-tailed bat \CHIROPTERA \Molossidae \Tadarida brasiliensis \1. Zoonomia \GCA_004025005.1 \LC \\ 108 \Stripe-headed round-eared bat \CHIROPTERA \Phyllostomidae \Tonatia saurophila \1. Zoonomia \GCA_004024845.1 \LC \\ 109 \Screaming hairy armadillo \CINGULATA \Dasypodidae \Chaetophractus vellerosus \1. Zoonomia \GCA_004027955.1 \LC \\ 110 \Nine-banded armadillo \CINGULATA \Dasypodidae \Dasypus novemcinctus \2. Existing assembly \GCF_000208655.1 \LC \\ 111 \Southern three-banded armadillo \CINGULATA \Dasypodidae \Tolypeutes matacus \1. Zoonomia \GCA_004025125.1 \NT \\ 112 \Sunda flying lemur \DERMOPTERA \Cynocephalidae \Galeopterus variegatus \1. Zoonomia \GCA_004027255.1 \LC \\ 113 \Star-nosed mole \EULIPOTYPHLA \Talpidae \Condylura cristata \2. Existing assembly \GCF_000260355.1 \LC \\ 114 \Indochinese shrew \EULIPOTYPHLA \Soricidae \Crocidura indochinensis \1. Zoonomia \GCA_004027635.1 \LC \\ 115 \Western european hedgehog \EULIPOTYPHLA \Erinaceidae \Erinaceus europaeus \2. Existing assembly \GCF_000296755.1 \LC \\ 116 \Eastern mole \EULIPOTYPHLA \Talpidae \Scalopus aquaticus \1. Zoonomia \GCA_004024925.1 \LC \\ 117 \Hispaniolan solenodon \EULIPOTYPHLA \Solenodontidae \Solenodon paradoxus \1. Zoonomia \GCA_004363575.1 \EN \\ 118 \European shrew \EULIPOTYPHLA \Soricidae \Sorex araneus \2. Existing assembly \GCF_000181275.1 \LC \\ 119 \Gracile shrew-like mole \EULIPOTYPHLA \Talpidae \Uropsilus gracilis \1. Zoonomia \GCA_004024945.1 \LC \\ 120 \African yellow-spotted rock hyrax \HYRACOIDEA \Procaviidae \Heterohyrax brucei \1. Zoonomia \GCA_004026845.1 \LC \\ 121 \South African rock hyrax \HYRACOIDEA \Procaviidae \Procavia capensis \1. Zoonomia \GCA_004026925.1 \LC \\ 122 \Snowshoe hare \LAGOMORPHA \Leporidae \Lepus americanus \1. Zoonomia \GCA_004026855.1 \LC \\ 123 \American pika \LAGOMORPHA \Ochotonidae \Ochotona princeps \2. Existing assembly \GCF_000292845.1 \LC \\ 124 \Rabbit \LAGOMORPHA \Leporidae \Oryctolagus cuniculus \2. Existing assembly \GCF_000003625.3 \NT \\ 125 \Cape elephant shrew \MACROSCELIDEA \Macroscelididae \Elephantulus edwardii \1. Zoonomia \GCA_004027355.1 \LC \\ 126 \Southern white rhinoceros \PERISSODACTYLA \Rhinocerotidae \Ceratotherium simum \2. Existing assembly \GCF_000283155.1 \NT \\ 127 \Northern white rhino \PERISSODACTYLA \Rhinocerotidae \Ceratotherium simum cottoni \1. Zoonomia \GCA_004027795.1 \CR \\ 128 \Sumatran rhinoceros \PERISSODACTYLA \Rhinocerotidae \Dicerorhinus sumatrensis \2. Existing assembly \GCA_002844835.1 \CR \\ 129 \Black rhinocerous \PERISSODACTYLA \Rhinocerotidae \Diceros bicornis \1. Zoonomia \GCA_004027315.1 \CR \\ 130 \Ass \PERISSODACTYLA \Equidae \Equus asinus \2. Existing assembly \GCF_001305755.1 \LC \\ 131 \Horse \PERISSODACTYLA \Equidae \Equus caballus \2. Existing assembly \GCF_000002305.2 \LC \\ 132 \Przewalski's horse \PERISSODACTYLA \Equidae \Equus przewalskii \2. Existing assembly \GCF_000696695.1 \EN \\ 133 \Malayan tapir \PERISSODACTYLA \Tapiridae \Tapirus indicus \1. Zoonomia \GCA_004024905.1 \EN \\ 134 \South American tapir \PERISSODACTYLA \Tapiridae \Tapirus terrestris \1. Zoonomia \GCA_004025025.1 \VU \\ 135 \Malayan pangolin \PHOLIDOTA \Manidae \Manis javanica \2. Existing assembly \GCF_001685135.1 \CR \\ 136 \Chinese pangolin \PHOLIDOTA \Manidae \Manis pentadactyla \2. Existing assembly \GCA_000738955.1 \CR \\ 137 \Linnaeus's two toed sloth \PILOSA \Megalonychidae \Choloepus didactylus \1. Zoonomia \GCA_004027855.1 \LC \\ 138 \Hoffmann's two-fingered sloth \PILOSA \Megalonychidae \Choloepus hoffmanni \2. Existing assembly \GCA_000164785.2 \LC \\ 139 \Giant anteater \PILOSA \Myrmecophagidae \Myrmecophaga tridactyla \1. Zoonomia \GCA_004026745.1 \VU \\ 140 \Southern tamandua \PILOSA \Myrmecophagidae \Tamandua tetradactyla \1. Zoonomia \GCA_004025105.1 \LC \\ 141 \Mexican howler monkey \PRIMATES \Atelidae \Alouatta palliata mexicana \1. Zoonomia \GCA_004027835.1 \CR \\ 142 \Ma's night monkey \PRIMATES \Aotidae \Aotus nancymaae \2. Existing assembly \GCA_000952055.2 \VU \\ 143 \Geoffroy's spider monkey \PRIMATES \Atelidae \Ateles geoffroyi \1. Zoonomia \GCA_004024785.1 \EN \\ 144 \White-eared titi \PRIMATES \Pitheciidae \Callicebus donacophilus \1. Zoonomia \GCA_004027715.1 \LC \\ 145 \White-tufted-ear marmoset \PRIMATES \Cebidae \Callithrix jacchus \2. Existing assembly \GCA_002754865.1 \LC \\ 146 \White-fronted capuchin \PRIMATES \Cebidae \Cebus albifrons \1. Zoonomia \GCA_004027755.1 \LC \\ 147 \White-faced sapajou \PRIMATES \Cebidae \Cebus capucinus \2. Existing assembly \GCF_001604975.1 \LC \\ 148 \Sooty mangabey \PRIMATES \Cercopithecidae \Cercocebus atys \2. Existing assembly \GCF_000955945.1 \NT \\ 149 \De brazza's monkey \PRIMATES \Cercopithecidae \Cercopithecus neglectus \1. Zoonomia \GCA_004027615.1 \LC \\ 150 \Fat-tailed dwarf lemur \PRIMATES \Cheirogaleidae \Cheirogaleus medius \1. Zoonomia \GCA_004024725.1 \LC \\ 151 \Green monkey \PRIMATES \Cercopithecidae \Chlorocebus sabaeus \2. Existing assembly \GCF_000409795.2 \LC \\ 152 \Angolan colobus \PRIMATES \Cercopithecidae \Colobus angolensis \2. Existing assembly \GCF_000951035.1 \VU \\ 153 \Aye-aye \PRIMATES \Daubentoniidae \Daubentonia madagascariensis \1. Zoonomia \GCA_004027145.1 \EN \\ 154 \Patas monkey \PRIMATES \Cercopithecidae \Erythrocebus patas \1. Zoonomia \GCA_004027335.1 \LC \\ 155 \Sclater's lemur \PRIMATES \Lemuridae \Eulemur flavifrons \2. Existing assembly \GCA_001262665.1 \CR \\ 156 \Common brown lemur \PRIMATES \Lemuridae \Eulemur fulvus \1. Zoonomia \GCA_004027275.1 \NT \\ 157 \Western lowland gorilla \PRIMATES \Hominidae \Gorilla gorilla \2. Existing assembly \GCA_900006655.3 \CR \\ 158 \Human \PRIMATES \Hominidae \Homo sapiens \2. Existing assembly \GCA_000001405.27 \LC \\ 159 \Indri \PRIMATES \Indridae \Indri indri \1. Zoonomia \GCA_004363605.1 \CR \\ 160 \Ring tailed lemur \PRIMATES \Lemuridae \Lemur catta \1. Zoonomia \GCA_004024665.1 \EN \\ 161 \Crab-eating macaque \PRIMATES \Cercopithecidae \Macaca fascicularis \2. Existing assembly \GCF_000364345.1 \DD \\ 162 \Rhesus monkey \PRIMATES \Cercopithecidae \Macaca mulatta \2. Existing assembly \GCF_000772875.2 \LC \\ 163 \Pig-tailed macaque \PRIMATES \Cercopithecidae \Macaca nemestrina \2. Existing assembly \GCF_000956065.1 \VU \\ 164 \Drill \PRIMATES \Cercopithecidae \Mandrillus leucophaeus \2. Existing assembly \GCF_000951045.1 \EN \\ 165 \Gray mouse lemur \PRIMATES \Cheirogaleidae \Microcebus murinus \2. Existing assembly \GCA_000165445.3 \LC \\ 166 \Coquerel's giant mouse lemur \PRIMATES \Cheirogaleidae \Mirza coquereli \1. Zoonomia \GCA_004024645.1 \EN \\ 167 \Proboscis monkey \PRIMATES \Cercopithecidae \Nasalis larvatus \1. Zoonomia \GCA_004027105.1 \EN \\ 168 \Northern white-cheeked gibbon \PRIMATES \Hylobatidae \Nomascus leucogenys \2. Existing assembly \GCF_000146795.2 \CR \\ 169 \Sunda slow loris \PRIMATES \Lorisidae \Nycticebus coucang \1. Zoonomia \GCA_004027815.1 \VU \\ 170 \Small-eared galago \PRIMATES \Galagidae \Otolemur garnettii \2. Existing assembly \GCF_000181295.1 \LC \\ 171 \Pygmy chimpanzee \PRIMATES \Hominidae \Pan paniscus \2. Existing assembly \GCF_000258655.2 \EN \\ 172 \Chimpanzee \PRIMATES \Hominidae \Pan troglodytes \2. Existing assembly \GCA_002880755.3 \EN \\ 173 \Olive baboon \PRIMATES \Cercopithecidae \Papio anubis \2. Existing assembly \GCA_000264685.2 \LC \\ 174 \Ugandan red colobus \PRIMATES \Cercopithecidae \Piliocolobus tephrosceles \2. Existing assembly \GCA_002776525.1 \EN \\ 175 \White-faced saki \PRIMATES \Pitheciidae \Pithecia pithecia \1. Zoonomia \GCA_004026645.1 \LC \\ 176 \Sumatran orangutan \PRIMATES \Hominidae \Pongo abelii \2. Existing assembly \GCA_002880775.3 \CR \\ 177 \Coquerel's sifaka \PRIMATES \Indridae \Propithecus coquereli \2. Existing assembly \GCF_000956105.1 \EN \\ 178 \Red-shanked douc \PRIMATES \Cercopithecidae \Pygathrix nemaeus \1. Zoonomia \GCA_004024825.1 \EN \\ 179 \Black snub-nosed monkey \PRIMATES \Cercopithecidae \Rhinopithecus bieti \2. Existing assembly \GCF_001698545.1 \EN \\ 180 \Golden snub-nosed monkey \PRIMATES \Cercopithecidae \Rhinopithecus roxellana \2. Existing assembly \GCF_000769185.1 \EN \\ 181 \Emperor tamarin \PRIMATES \Cebidae \Saguinus imperator \1. Zoonomia \GCA_004024885.1 \LC \\ 182 \Bolivian squirrel monkey \PRIMATES \Cebidae \Saimiri boliviensis \2. Existing assembly \GCF_000235385.1 \LC \\ 183 \Northern Plains gray langur \PRIMATES \Cercopithecidae \Semnopithecus entellus \1. Zoonomia \GCA_004025065.1 \LC \\ 184 \African savanna elephant \PROBOSCIDEA \Elephantidae \Loxodonta Africana \2. Existing assembly \GCF_000001905.1 \VU \\ 185 \Cairo spiny mouse \RODENTIA \Muridae \Acomys cahirinus \1. Zoonomia \GCA_004027535.1 \LC \\ 186 \Gobi jerboa \RODENTIA \Dipodidae \Allactaga bullata \1. Zoonomia \GCA_004027895.1 \LC \\ 187 \Mountain beaver \RODENTIA \Aplodontiidae \Aplodontia rufa \1. Zoonomia \GCA_004027875.1 \LC \\ 188 \Desmarest's hutia \RODENTIA \Capromyidae \Capromys pilorides \1. Zoonomia \GCA_004027915.1 \LC \\ 189 \North American beaver \RODENTIA \Castoridae \Castor canadensis \1. Zoonomia \GCA_004027675.1 \LC \\ 190 \Brazilian guinea pig \RODENTIA \Caviidae \Cavia aperea \2. Existing assembly \GCA_000688575.1 \LC \\ 191 \Domestic guinea pig \RODENTIA \Caviidae \Cavia porcellus \2. Existing assembly \GCF_000151735.1 \LC \\ 192 \Montane guinea pig \RODENTIA \Caviidae \Cavia tschudii \1. Zoonomia \GCA_004027695.1 \LC \\ 193 \Long-tailed chinchilla \RODENTIA \Chinchillidae \Chinchilla lanigera \2. Existing assembly \GCF_000276665.1 \EN \\ 194 \Gambian pouched rat \RODENTIA \Nesomyidae \Cricetomys gambianus \1. Zoonomia \GCA_004027575.1 \LC \\ 195 \Chinese hamster \RODENTIA \Nesomyidae \Cricetulus griseus \2. Existing assembly \GCA_900186095.1 \LC \\ 196 \Common gundi \RODENTIA \Ctenodactylidae \Ctenodactylus gundi \1. Zoonomia \GCA_004027205.1 \LC \\ 197 \Social tuco-tuco \RODENTIA \Ctenomyidae \Ctenomys sociabilis \1. Zoonomia \GCA_004027165.1 \CR \\ 198 \Lowland paca \RODENTIA \Cuniculidae \Cuniculus paca \1. Zoonomia \GCA_004365215.1 \LC \\ 199 \Central American agouti \RODENTIA \Dasyproctidae \Dasyprocta punctata \1. Zoonomia \GCA_004363535.1 \LC \\ 200 \Pacarana \RODENTIA \Dinomyidae \Dinomys branickii \1. Zoonomia \GCA_004027595.1 \LC \\ 201 \Ord's kangaroo rat \RODENTIA \Heteromyidae \Dipodomys ordii \2. Existing assembly \GCF_000151885.1 \LC \\ 202 \Stephen's kangaroo rat \RODENTIA \Heteromyidae \Dipodomys stephensi \1. Zoonomia \GCA_004024685.1 \VU \\ 203 \Patagonian mara \RODENTIA \Caviidae \Dolichotis patagonum \1. Zoonomia \GCA_004027295.1 \NT \\ 204 \Transcaucasian mole vole \RODENTIA \Cricetidae \Ellobius lutescens \2. Existing assembly \GCA_001685075.1 \LC \\ 205 \Northern mole vole \RODENTIA \Cricetidae \Ellobius talpinus \2. Existing assembly \GCA_001685095.1 \LC \\ 206 \Damara mole-rat \RODENTIA \Bathyergidae \Fukomys damarensis \2. Existing assembly \GCF_000743615.1 \LC \\ 207 \Edible dormouse \RODENTIA \Gliridae \Glis glis \1. Zoonomia \GCA_004027185.1 \LC \\ 208 \Woodland doormouse \RODENTIA \Gliridae \Graphiurus murinus \1. Zoonomia \GCA_004027655.1 \LC \\ 209 \Naked mole-rat \RODENTIA \Bathyergidae \Heterocephalus glaber \2. Existing assembly \GCF_000247695.1 \LC \\ 210 \Capybara \RODENTIA \Caviidae \Hydrochoerus hydrochaeris \1. Zoonomia \GCA_004027455.1 \LC \\ 211 \Northern crested porcupine \RODENTIA \Hystricidae \Hystrix cristata \1. Zoonomia \GCA_004026905.1 \LC \\ 212 \Thirteen-lined ground squirrel \RODENTIA \Sciuridae \Ictidomys tridecemlineatus \2. Existing assembly \GCF_000236235.1 \LC \\ 213 \Lesser egyptian jerboa \RODENTIA \Dipodidae \Jaculus jaculus \2. Existing assembly \GCF_000280705.1 \LC \\ 214 \Alpine marmot \RODENTIA \Sciuridae \Marmota marmota \2. Existing assembly \GCF_001458135.1 \LC \\ 215 \Mongolian jird \RODENTIA \Muridae \Meriones unguiculatus \1. Zoonomia \GCA_004026785.1 \LC \\ 216 \Golden hamster \RODENTIA \Cricetidae \Mesocricetus auratus \2. Existing assembly \GCF_000349665.1 \VU \\ 217 \Prairie vole \RODENTIA \Cricetidae \Microtus ochrogaster \2. Existing assembly \GCF_000317375.1 \LC \\ 218 \Ryukyu mouse \RODENTIA \Muridae \Mus caroli \2. Existing assembly \GCA_900094665.2 \LC \\ 219 \House mouse \RODENTIA \Muridae \Mus musculus \2. Existing assembly \GCF_000001635.26 \LC \\ 220 \Shrew mouse \RODENTIA \Muridae \Mus pahari \2. Existing assembly \GCA_900095145.2 \LC \\ 221 \Western wild mouse \RODENTIA \Muridae \Mus spretus \2. Existing assembly \GCA_001624865.1 \LC \\ 222 \Hazel dormouse \RODENTIA \Gliridae \Muscardinus avellanarius \1. Zoonomia \GCA_004027005.1 \LC \\ 223 \Coypu \RODENTIA \Myocastoridae \Myocastor coypus \1. Zoonomia \GCA_004027025.1 \LC \\ 224 \Upper galilee mountains blind mole rat \RODENTIA \Spalacidae \Nannospalax galili \2. Existing assembly \GCF_000622305.1 \DD \\ 225 \Degu \RODENTIA \Octodontidae \Octodon degus \2. Existing assembly \GCF_000260255.1 \LC \\ 226 \Muskrat \RODENTIA \Cricetidae \Ondatra zibethicus \1. Zoonomia \GCA_004026605.1 \LC \\ 227 \Scorpion mouse \RODENTIA \Cricetidae \Onychomys torridus \1. Zoonomia \GCA_004026725.1 \LC \\ 228 \Pacific pocket mouse \RODENTIA \Heteromyidae \Perognathus longimembris pacificus \1. Zoonomia \GCA_004363475.1 \LC \\ 229 \Prairie deer mouse \RODENTIA \Cricetidae \Peromyscus maniculatus \2. Existing assembly \GCF_000500345.1 \LC \\ 230 \Dassie rat \RODENTIA \Petromuridae \Petromus typicus \1. Zoonomia \GCA_004026965.1 \LC \\ 231 \Fat sand rat \RODENTIA \Muridae \Psammomys obesus \2. Existing assembly \GCA_002215935.1 \LC \\ 232 \Norway rat \RODENTIA \Muridae \Rattus norvegicus \2. Existing assembly \GCF_000001895.5 \LC \\ 233 \Hispid cotton rat \RODENTIA \Cricetidae \Sigmodon hispidus \1. Zoonomia \GCA_004025045.1 \LC \\ 234 \Daurian ground squirrel \RODENTIA \Sciuridae \Spermophilus dauricus \2. Existing assembly \GCA_002406435.1 \LC \\ 235 \Greater cane rat \RODENTIA \Thryonomyidae \Thryonomys swinderianus \1. Zoonomia \GCA_004025085.1 \LC \\ 236 \Cape ground squirrel \RODENTIA \Sciuridae \Xerus inauris \1. Zoonomia \GCA_004024805.1 \LC \\ 237 \Meadow jumping mouse \RODENTIA \Dipodidae \Zapus hudsonius \1. Zoonomia \GCA_004024765.1 \LC \\ 238 \Northern tree shrew \SCANDENTIA \Tupaiidae \Tupaia belangeri chinensis \2. Existing assembly \GCF_000334495.1 \LC \\ 239 \Large treeshrew \SCANDENTIA \Tupaiidae \Tupaia tana \1. Zoonomia \GCA_004365275.1 \LC \\ 240 \Florida manatee \SIRENIA \Trichechidae \Trichechus manatus \2. Existing assembly \GCF_000243295.1 \EN \\ 241 \Aardvark \TUBULIDENTATA \Orycteropodidae \Orycteropus afer \1. Zoonomia \GCA_004365145.1 \LC \
\ Table 1. Genome assemblies included in the 241-way Conservation track.
\ Species status:LC = Least Concern; NT = Near threatened; VU = Vulnerable; EN = Endangered; CR = Critically endangered
\
Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ The names of selected species are colored according to their clade,\ alternating between blue and green.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\
- \
- \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
- \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
- \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
- Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\
\ Codon translation uses the following gene tracks as the basis for translation:\
\ \\
\ Table 2. Gene tracks used for codon translation.\\ Gene Track Species \ UCSC Genes Human \ Ensembl Genes v104 Brazilian guinea pig, gibbon \ RefSeq Genes Angolan colobus, Balaenoptera acutorostrata, Bison bison, Black flying-fox, Brandt's myotis (bat), Bushbaby, Camelus bactrianus, Camelus ferus, Canis lupus familiaris, Cape elephant shrew, Capra hircus, Cavia porcellus, Ceratotherium simum, Cercocebus atys, Chinchilla, Chinese tree shrew, Chlorocebus sabaeus, Condylura cristata, Damara mole rat, Dasypus novemcinctus, David's myotis (bat), Delphinapterus leucas, Echinops telfairi, Enhydra lutris, Eptesicus fuscus, Equus asinus, Equus przewalskii, Erinaceus europaeus, Felis catus, Heterocephalus glaber, Jaculus jaculus, Kangaroo rat, Killer whale, Leptonychotes weddellii, Lipotes vexillifer, Little brown bat, Loxodonta africana, Macaca fascicularis, Macaca nemestrina, Mandrillus leucophaeus, Manis javanica, Marmota marmota, Mesocricetus auratus, Miniopterus natalensis, Mus musculus, Nannospalax galili, Ochotona princeps, Octodon degus, Oryctolagus cuniculus, Pacific walrus, Pan paniscus, Panthera tigris, Peromyscus maniculatus, Prairie vole, Propithecus coquereli, Pteropus vampyrus, Puma concolor, Rattus norvegicus, Rhinopithecus bieti, Shrew, Squirrel monkey, Squirrel, Sus scrofa, Trichechus manatus, Ursus maritimus, White-faced sapajou, Wild yak \ no annotation Acinonyx jubatus, Acomys cahirinus, Ailuropoda melanoleuca, Ailurus fulgens, Allactaga bullata, Alouatta palliata, Ammotragus lervia, Anoura caudifer, Antilocapra americana, Aotus nancymaae, Aplodontia rufa, Artibeus jamaicensis, Ateles geoffroyi, Balaenoptera bonaerensis, Beatragus hunteri, Bos indicus, Bos taurus, Bubalus bubalis, Callicebus donacophilus, Callithrix jacchus, Camelus dromedarius, Canis lupus, Capra aegagrus, Capromys pilorides, Carollia perspicillata, Castor canadensis, Catagonus wagneri, Cavia tschudii, Cebus albifrons, Ceratotherium simum cottoni, Cercopithecus neglectus, Chaetophractus vellerosus, Cheirogaleus medius, Choloepus didactylus, Choloepus hoffmanni, Chrysochloris asiatica, Craseonycteris thonglongyai, Cricetomys gambianus, Cricetulus griseus, Crocidura indochinensis, Cryptoprocta ferox, Ctenodactylus gundi, Ctenomys sociabilis, Cuniculus paca, Dasyprocta punctata, Daubentonia madagascariensis, Desmodus rotundus, Dicerorhinus sumatrensis, Diceros bicornis, Dinomys branickii, Dipodomys stephensi, Dolichotis patagonum, Elaphurus davidianus, Ellobius lutescens, Ellobius talpinus, Equus caballus, Erythrocebus patas, Eschrichtius robustus, Eubalaena japonica, Eulemur flavifrons, Eulemur fulvus, Felis nigripes, Galeopterus variegatus, Giraffa tippelskirchi, Glis glis, Gorilla gorilla, Graphiurus murinus, Helogale parvula, Hemitragus hylocrius, Heterohyrax brucei, Hippopotamus amphibius, Hipposideros armiger, Hipposideros galeritus, Hyaena hyaena, Hydrochoerus hydrochaeris, Hystrix cristata, Indri indri, Inia geoffrensis, Kogia breviceps, Lasiurus borealis, Lemur catta, Lepus americanus, Lycaon pictus, Macaca mulatta, Macroglossus sobrinus, Manis pentadactyla, Megaderma lyra, Mellivora capensis, Meriones unguiculatus, Mesoplodon bidens, Microcebus murinus, Microgale talazaci, Micronycteris hirsuta, Miniopterus schreibersii, Mirounga angustirostris, Mirza coquereli, Monodon monoceros, Mormoops blainvillei, Moschus moschiferus, Mungos mungo, Murina feae, Mus caroli, Mus pahari, Mus spretus, Muscardinus avellanarius, Mustela putorius, Myocastor coypus, Myotis myotis, Myrmecophaga tridactyla, Nasalis larvatus, Neomonachus schauinslandi, Neophocaena asiaeorientalis, Noctilio leporinus, Nycticebus coucang, Odocoileus virginianus, Okapia johnstoni, Ondatra zibethicus, Onychomys torridus, Orycteropus afer, Ovis aries, Ovis canadensis, Pan troglodytes, Panthera onca, Panthera pardus, Pantholops hodgsonii, Papio anubis, Paradoxurus hermaphroditus
Methods
\\ The Zoonomia alignment was composed of two sets of mammalian genomes: newly\ assembled DISCOVAR assemblies and GenBank assemblies. The DISCOVAR genomes\ were masked with RepeatMasker (commit 2d947604), using Repbase version\ 20170127 as the repeat library and CrossMatch as the alignment engine. The\ pipeline used is available at\ repeatMaskerPipeline\ (commit a6ad966). The\ guide-tree topology was taken from the TimeTree database (using release\ current in October 2018), and the branch lengths were estimated using the\ least-squares-fit mode of PHYLIP, version\ 3.695. The distance matrix used was largely based on distances from the 4d\ site trees from the UCSC browser. To add those species not present in the\ UCSC tree, approximate distances estimated by Mash (commit 541971b)\ to the closest UCSC species\ were added to the distance between the two closest UCSC species. We used the\ HAL package (commit 68db41d)\ produce the HAL file.\
\\
\\
\ \Phylogenetic Tree Model
\\ The phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all-species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 241-way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene\ set, filtered to select single-coverage long transcripts.\
\\ This same tree model was used in the phyloP calculations; however, the\ background frequencies were modified to maintain reversibility.\ The resulting tree model:\ all species.\
\PhyloP Conservation
\\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (\ http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC).\
\ \References
\ \ \Zoonomia:
\\ Zoonomia Consortium..\ \ A comparative genomics multitool for scientific discovery and conservation.\ Nature. 2020 Nov;587(7833):240-245.\ PMID: 33177664;\ PMC: PMC7759459;\ DOI: 10.1038/s41586-020-2876-6\
\ \ \Cactus:
\\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\
\ \\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\
\ \\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\
\ \PhyloP:
\\ Cooper GM, Stone EA, Asimenos G, NISC Comparative Sequencing Program., Green ED, Batzoglou S, Sidow\ A.\ \ Distribution and intensity of constraint in mammalian genomic sequence.\ Genome Res. 2005 Jul;15(7):901-13.\ PMID: 15965027;\ PMC: PMC1172034;\ DOI: 10.1101/gr.3577405\
\ \\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363;\ PMC: PMC2798823\
\ \\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\ DOI: 10.1007/0-387-27733-1_12\
\ \\ Siepel A, Pollard KS, and Haussler D. New methods for detecting\ lineage-specific selection. In Proceedings of the 10th International\ Conference on Research in Computational Molecular Biology (RECOMB 2006), pp. 190-205.\ DOI: 10.1007/11732990_17\
\ compGeno 1 compositeTrack on\ dimensions dimensionX=clade\ dragAndDrop subTracks\ group compGeno\ html cons241way\ longLabel Zoonomia Alignment - 241 Placental Mammal Genomes aligned by the Zoonomia Project with Cactus\ priority 2\ shortLabel Zoonomia 241 Placent\ subGroup1 view Views align=Cactus_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ subGroup2 clade Clade primate=Primate carnivore=Carnivore cetartiodactyla=Cetartiodactyla chiroptera=Chiroptera rodents=Rodents mammals=Mammals all=All_species\ track cons241way\ type bed 4\ visibility hide\ covidHgiGwas COVID GWAS v3 bigLolly 9 + GWAS meta-analyses from the COVID-19 Host Genetics Initiative 0 2.1 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,Description
\\ This track set shows GWAS meta-analyses from the \ \ COVID-19 Host Genetics Initiative (HGI): \ a collaborative effort to facilitate \ the generation, analysis and sharing of COVID-19 host genetics research.\ The COVID-19 HGI organizes meta-analyses across multiple studies contributed by \ partners world-wide\ to identify the genetic determinants of SARS-CoV-2 infection susceptibility and disease severity \ and outcomes. Moreover, the COVID-19 HGI also aims to provide a platform for study partners to \ share analytical results in the form of summary statistics and/or individual level data where \ possible.\
\ \\ The specific phenotypes studied by the COVID-19 HGI are those that benefit from maximal sample \ size: primary analysis on disease severity. Two meta-analyses are represented in this track:\
\ \- \
- ANA_C2_V2: covid vs. population (6696 cases from 18 studies) \
- ANA_B2_V2: hospitalized covid vs. population (3199 cases from 8 studies) \
Display Conventions
\\ Displayed items are colored by GWAS effect: red for positive, blue for negative. \ The height of the item reflects the effect size. The effect size, defined as the \ contribution of a SNP to the genetic variance of the trait, was measured as beta coefficient \ (beta). The higher the absolute value of the beta coefficient, the stronger the effect.\ The color saturation indicates statistical significance: p-values smaller than 1e-5\ are brightly colored (bright red\ \ , bright blue\ \ ),\ those with less significance (p >= 1e-5) are paler (light red\ \ , light blue\ \ ). For better visualization of the data, only SNPs with p-values smaller than 1e-3 are \ displayed by default. \
\ \\ Each track has separate display controls and data can be filtered according to the\ number of studies, minimum -log10 p-value, and the\ effect size (beta coefficient), using the track Configure options.\
\ \\ Mouseover on items shows the rs ID (or chrom:pos if none assigned), both the non-effect \ and effect alleles, the effect size (beta coefficient), the p-value, and the number of \ studies.\ Additional information on each variant can be found on the details page by clicking on the item.\
\ \Methods
\\ COVID-19 Host Genetics Initiative (HGI) GWAS meta-analysis round 3 (July 2020) results were used \ in this study. Each participating study partner submitted GWAS summary statistics for up to four \ of the COVID-19 phenotype definitions.\
\\ Data were generated from genome-wide SNP array and whole exome and genome\ sequencing, leveraging the impact of both common and rare variants. The statistical analysis\ performed takes into account differences between sex, ancestry, and date of sample collection. \ Alleles were harmonized across studies and reported allele frequencies are based on gnomAD \ version 3.0 reference data. Most study partners used the SAIGE GWAS pipeline in order \ to generate summary statistics used for the COVID-19 HGI meta-analysis. The summary statistics \ of individual studies were manually examined for inflation, \ deflation, and excessive number of false positives. Qualifying summary statistics were filtered for \ INFO > 0.6 and MAF > 0.0001 prior to meta-analyzing the entirety of the data. \ The meta-analysis was done using inverse variance weighting of effects method, accounting for \ strand differences and allele flips in the individual studies. \
\\ The meta-analysis results of variants appearing in at least three studies (analysis C2) or two \ studies (all other analyses) were made publicly available.\ The meta-analysis software and workflow are available here. More information about the \ prospective studies, processing pipeline, results and data sharing can be found \ here.\
\ \ \Data Access
\\ The data underlying these tracks and summary statistics results are publicly available in \ COVID19-hg Release 3 (June 2020).\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. \ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the COVID-19 Host Genetics Initiative contributors and project leads for making these \ data available, and in particular to Rachel Liao, Juha Karjalainen, and Kumar Veerapen at the \ Broad Institute for their review and input during browser track development.\
\ \References
\ \\
COVID-19 Host Genetics Initiative.\
\
The COVID-19 Host Genetics Initiative, a global initiative to elucidate the role of host genetic\
factors in susceptibility and severity of the SARS-CoV-2 virus pandemic.\
Eur J Hum Genet. 2020 Jun;28(6):715-718.\
PMID: 32404885; PMC:
Description
\ \This track displays genome-wide, strand-specific transcription levels from 523\ individual ENCODE total RNA-seq experiments. The data capture both coding and non-coding RNAs\ profiled across all phases of the ENCODE project. The signal shown is derived from the\ reads per million (RPM) of uniquely mapped reads on each genomic strand. The data are\ processed following the\ ENCODE\ bulk RNA-seq pipeline.
\ \Each subtrack represents a single RNA-seq experiment in a specific biosample, with\ separate signal tracks for the plus and minus strands. These datasets provide the\ underlying experimental signals used to generate the corresponding layered summary tracks.\ Additional datasets measuring transcription levels are available at the\ ENCODE portal.
\ \Display Conventions and Configuration
\ \Click a specific biosample type and organ/tissue combination to view available datasets.\ Subtracks can be further filtered by Organ, Biosample Type, Life Stage, and Strand (plus\ or minus). Each track is colored based on the organ/tissue of origin.
\ \Plus Strand and Minus Strand subtracks are colored by the organ or tissue of origin, as shown below.
\| adipose | \adrenal gland | \blood | \blood vessel | \
| bone | \brain | \breast | \connective tissue | \
| embryo | \epithelium | \esophagus | \eye | \
| gallbladder | \heart | \kidney | \large intestine | \
| liver | \lung | \mouth | \muscle | \
| nerve | \nose | \ovary | \pancreas | \
| penis | \placenta | \prostate | \skin | \
| small intestine | \spinal cord | \spleen | \stomach | \
| testis | \thyroid | \trachea | \urinary bladder | \
| uterus | \vagina | \\ | \ |
Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigWig\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.\ Clicking any accession in the track's configuration table links directly to the\ corresponding file details page on the ENCODE portal.
\ \\
These files may also be locally explored using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain data confined to a given range, e.g.,\
\
bigWigToWig -chrom=chr1 -start=100000 -end=100500 https://encode-public.s3.amazonaws.com/2020/07/14/2b6cd419-144d-49fe-aa19-b5214ca04297/ENCFF102QGV.bigWig stdout
Credits
\ \Data were generated by the ENCODE Consortium through the following production labs:\ Drs. Barbara Wold (Caltech) and Thomas Gingeras (CSHL).
\ \The data were further processed for visualization through a collaborative effort between\ the Weng lab and the\ Moore lab at UMass\ Chan Medical School (funded by NIH grant HG012343). Integration and visualization were\ developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\ \\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ This track shows rare variants associated with monogenic congenital defects of immunity to \ the SARS-CoV-2 virus identified by the \ COVID Human Genetic Effort. \ This international consortium aims to discover truly causative variations: those underlying \ severe forms of COVID-19 in previously healthy individuals, and those that make certain \ individuals resistant to infection by the SARS-CoV2 virus despite repeated exposure.\
\\ The major feature of the small set of variants in this track is that they are functionally tested\ to be deleterious and genetically tested to be disease-causing. \ Specifically, rare variants were predicted to be loss-of-function at human loci known to govern\ interferon (IFN) immunity to influenza virus in patients with life-threatening COVID-19 pneumonia, \ relative to subjects with asymptomatic or benign infection.\ These genetic defects display incomplete penetrance for influenza respiratory distress and only\ appear clinically upon infection with the more virulent SARS-CoV-2.\
\ \Display Conventions
\\ Only eight genes with 23 variants are contained in this track. \ Use the links below to navigate to the gene of interest or view \ all eight genes together using the following sessions for \ hg38 or\ hg19.\
\ \| Gene Name | \Human GRCh37/hg19 Assembly | \Human GRCh38/hg38 Assembly | \
|---|---|---|
| TLR3 | \\ chr4:186990309-187006252 | \\ chr4:186069152-186088069 | \
| IRF7 | \\ chr11:612555-615999 | \\ chr11:612591-615970 | \
| UNC93B1 | \\ chr11:67758575-67771593 | \\ chr11:67991100-68004097 | \
| TBK1 | \\ chr12:64845840-64895899 | \\ chr12:64452120-64502114 | \
| TICAM1 | \\ chr19:4815936-4831754 | \\ chr19:4815932-4831704 | \
| IRF3 | \\ chr19:50162826-50169132 | \\ chr19:49659570-49665875 | \
| IFNAR1 | \\ chr21:34697214-34732128 | \\ chr21:33324970-33359864 | \
| IFNAR2 | \\ chr21:34602231-34636820 | \\ chr21:33229974-33264525 | \
Methods
\\ This track uses variant calls in autosomal IFN-related genes from whole exome and genome data \ with a MAF lower than 0.001 (gnomAD v2.1.1) and experimental demonstration of loss-of-function.\ The patient population studied consisted of 659 patients with life-threatening COVID-19 pneumonia \ relative to 534 subjects with asymptomatic or benign infection of varying ethnicities. \ Variants underlying autosomal-recessive or autosomal-dominant deficiencies were identified in \ 23 patients (3.5%) 17 to 77 years of age.\ The proportion of individuals carrying at least one variant was compared between severe cases \ and control cases by means of logistic regression with the likelihood ratio test.\ Principal Component Analysis (PCA) was conducted with Plink v1.9 software on whole exome and \ genome sequencing data with the 1000 Genomes (1kG) Project phase 3 public database as reference.\ Analysis of enrichment in rare synonymous variants of the genes was performed to check the \ calibration of the burden test. \ The odds ratio was also estimated by logistic regression and adjusted for ethnic heterogeneity.\
\ \Data Access
\\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator.\ Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the COVID Human Genetic Effort contributors for making these data available, and in\ particular to Qian Zhang at the Rockefeller University for review and input during browser track\ development.\
\ \References
\\ Zhang Q, Bastard P, Liu Z, Le Pen J, Moncada-Velez M, Chen J, Ogishi M, Sabli IKD, Hodeib S, Korol C\ et al.\ \ Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.\ Science. 2020 Sep 24;.\ PMID: 32972995\
\ \ phenDis 1 bigDataUrl /gbdb/hg38/covidMuts/covidMuts.bb\ color 179,0,0\ defaultLabelFields gene, name\ labelFields gene, name\ longLabel Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort\ mouseOver $gene $name $rsId Genotype: $genotype; Zygosity: $zygo ; Inheritance: $inhMode\ multiRegionsBedUrl /gbdb/hg38/covidMuts/covidMuts.regions.bed\ noScoreFilter on\ priority 2.2\ shortLabel COVID Rare Harmful Var\ superTrack covid pack\ track covidMuts\ type bigBed 12 +\ wgEncodeReg4TfChip TF ChIP-seq (Indiv.) bed 3 Peaks and signal from individual transcription factor ChIP experiments from ENCODE 4 0 2.2 0 0 0 127 127 127 0 0 0Description
\ \This track displays genome-wide binding profiles of DNA-associated proteins from 2,503\ individual ENCODE ChIP-seq experiments, which form the experimental basis for the TF rPeaks\ track. These proteins include transcription factors (TFs),\ RNA polymerase, and chromatin-associated proteins involved in transcriptional regulation.\ Sequence-specific TFs bind directly to DNA motifs via DNA-binding domains, while others\ interact indirectly through protein-protein interactions. ChIP-seq (chromatin\ immunoprecipitation followed by sequencing) enables genome-wide mapping of protein-DNA\ interactions. Each ChIP-seq experiment is shown as two subtracks:
\ \- \
- Signal - a bigWig track of the experiment's signal \
- Peak - a bigBed track of the experiment's peaks, colored in grayscale by ChIP-seq signal (darker = higher signal, score 0 to 1,000):\
\ \
\\ \ \Color \Score \\ \\ 1000 (highest signal) \\ \\ 750 \\ \\ 500 \\ \\ 250 \\ \\ 1 (lowest signal) \ \
Peaks often correspond to protein binding sites in specific biosamples. Additional\ ChIP-seq datasets can be explored through the\ ENCODE portal.
\ \Display Conventions and Configuration
\ \Click a specific protein target and organ/tissue combination to view available datasets.\ Subtracks can be further filtered by TF, Organ, Biosample Type, Life Stage, and Data\ Type (Signal or Peak).
\ \Signal subtracks are colored by the organ or tissue of origin, as shown below.\ Peak subtracks use the grayscale shading by ChIP-seq signal described above and are\ not colored by organ.
\| adipose | \adrenal gland | \blood | \blood vessel | \
| bone | \bone marrow | \brain | \breast | \
| connective tissue | \embryo | \epithelium | \esophagus | \
| eye | \heart | \kidney | \large intestine | \
| liver | \lung | \lymphoid tissue | \mouth | \
| muscle | \nerve | \ovary | \pancreas | \
| parathyroid gland | \penis | \placenta | \prostate | \
| skin | \small intestine | \spinal cord | \spleen | \
| stomach | \testis | \thyroid | \uterus | \
| vagina | \\ | \ | \ |
Data Access
\\ The ENCODE 4 Regulation data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored in bigBed\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.\ The original data files are also available from the\ ENCODE portal.\ Clicking any accession in the track's configuration table links directly to the\ corresponding file details page on the ENCODE portal.
\ \\
These files may also be locally explored using our tool bigBedToBed,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain features confined to a given range, e.g.,\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 https://encode-public.s3.amazonaws.com/2020/12/04/ddd64b54-7aad-4a2d-9270-ce677581b64b/ENCFF492SKF.bigBed stdout
Credits
\ \Data were generated by the ENCODE Consortium through the following production labs:\ Drs. Bradley Bernstein (Broad), John Stamatoyannopoulos (UW),\ Kevin Struhl (HMS), Kevin White (UChicago), Michael Snyder (Stanford),\ Peggy Farnham (USC), Richard Myers (HAIB), Sherman Weissman (Yale),\ Tim Reddy (Duke), Vishwanath Iyer (UTA), and Xiang-Dong Fu (UCSD).
\ \The data were further processed for visualization through a collaborative effort between\ the Weng lab and the\ Moore lab at UMass\ Chan Medical School (funded by NIH grant HG012343). Integration and visualization were\ developed by Drs. Mingshi Gao, Jill Moore, and Zhiping Weng at UMass Chan Medical School,\ who were part of the ENCODE Data Analysis Center.
\ \References
\ \\
ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J,\
Kawli T, Davis CA, Dobin A et al.\
\
Expanded encyclopaedias of DNA elements in the human and mouse genomes.\
Nature. 2020 Jul;583(7818):699-710.\
PMID: 32728249; PMC:
\
Moore JE, Pratt HE, Fan K, Phalke N, Fisher J, Elhajjajy SI, Andrews G, Gao M, Shedd N,\
Fu Y et al.\
\
An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional\
Regulation.\
Nature. 2026 January 7.\
PMID: 39763870; PMC:
Description
\\ This track shows structural variants (SVs) from Oxford Nanopore long-read\ whole-genome sequencing of 100 individuals in the 1000 Genomes Project,\ as released by the 1000 Genomes Project ONT Sequencing Consortium and\ described in Gustafson et al. 2024. The cohort spans all five 1000\ Genomes superpopulations and 19 subpopulations. Samples were sequenced\ with ONT R9.4.1 pores at ~37x coverage with median read N50 of ~54 kb.\
\\ The track contains 113,159 SVs (63,177 insertions, 49,700 deletions,\ 211 inversions, 71 duplications; byte-identical duplicate records have been\ removed). Each variant was called by up to five\ independent methods (three alignment-based: Sniffles2, cuteSV, SVIM;\ and assembly-based hapdiff on Flye or Shasta/Hapdup assemblies) and then\ merged across callers and samples with Jasmine to produce a\ cross-sample consensus catalog.\
\\ This 100-sample Gustafson cohort is distinct from the Vienna\ 1000-Genomes-ONT release (1KG ONT SVs),\ which uses different samples, pore chemistry and callers; the two\ releases share neither samples nor calls.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Duplications (DUP) - green \
- Inversions (INV) - orange \
\ Insertions are placed at the insertion site with a width of 1 bp; deletions,\ duplications and inversions span the affected reference interval. Filters\ are available for SV type, SV length and carrier-sample count. The detail\ page also shows the number of per-caller calls supporting each site\ (VARCALLS) and whether the source caller marked the breakpoints as precise.\
\ \Methods
\\ Gustafson et al. 2024 performed Oxford Nanopore long-read sequencing on\ 100 samples from the 1000 Genomes Project (all five superpopulations and\ 19 subpopulations) using R9.4.1 flow cells, at a median per-sample\ coverage of ~37x and read N50 of ~54 kb. Per-sample SV calls were\ generated through the Napu pipeline with five independent methods: three\ alignment-based callers (Sniffles2, cuteSV and SVIM run on minimap2\ alignments to GRCh38) and two assembly-based callers (hapdiff run on Flye\ and on Shasta/Hapdup assemblies). The five per-sample VCFs were merged\ with Jasmine\ in two stages (intra-sample consensus, then cross-sample merge). The\ released confident site-level callset is defined as variants supported by\ hapdiff and at least two unique alignment-based callers, yielding 113,696\ SVs (63,177 insertions, 49,704 deletions, 744 inversions, 71\ duplications). SV counts per sample and multicaller concordance were\ benchmarked against the HPRC Sniffles2 truth and the GIAB HG002 Tier1\ region with Truvari v4.1.0.\
\\ The source Jasmine-merged VCF was downloaded from the 1000 Genomes ONT S3\ bucket:\ \ 20240423_jasmine_intrasample_noBND_custom_suppvec_alphanumeric_header_JASMINE.vcf.gz.\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator, and accessed\ programmatically through our API,\ track=gustafsonSv.\
\\ The bigBed is available from\ our\ download server as gustafson.bb. Example:\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/gustafson.bb -chrom=chr21 -start=0 -end=100000000 stdout.\
\\ The original VCF is available from the 1000 Genomes ONT S3 bucket:\ \ 20240423_jasmine_intrasample_noBND_custom_suppvec_alphanumeric_header_JASMINE.vcf.gz.\
\ \Credits
\\ Thanks to Gustafson and colleagues and the 1000 Genomes Project ONT\ Sequencing Consortium for releasing this dataset.\
\ \References
\ \ \\
Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA,\
Richmond PA, De Coster W et al.\
\
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive\
catalog of human genetic variation.\
Genome Res. 2024 Nov 20;34(11):2061-2073.\
PMID: 39358015; PMC:
SV len: $svLen
Ins len: $insLen
AC: $AC
Samples: $sampleCount\ parent longReadVariants\ priority 3\ shortLabel 1KG ONT 100 SVs\ skipEmptyFields on\ track gustafsonSv\ type bigBed 9 +\ visibility hide\ phyloP447wayPrimates 447 phyloP primates wig -20 1.587 447 mammals / 233 primates Basewise Conservation by PhyloP SSREV, primates subset 2 3 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ longLabel 447 mammals / 233 primates Basewise Conservation by PhyloP SSREV, primates subset\ maxHeightPixels 100:50:11\ noInherit on\ parent cons447wayViewphyloP\ priority 3\ shortLabel 447 phyloP primates\ spanList 1\ subGroups view=phyloP\ track phyloP447wayPrimates\ type wig -20 1.587\ viewLimits -4.5:2\ windowingFunction mean\ encTfChipPkENCFF208AXT A549 CBX2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX2 in A549 from ENCODE 3 (ENCFF208AXT) 0 3 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX2 in A549 from ENCODE 3 (ENCFF208AXT)\ parent encTfChipPk off\ shortLabel A549 CBX2\ subGroups cellType=A549 factor=CBX2\ track encTfChipPkENCFF208AXT\ cloneEndABC12 ABC12 bed 12 Agencourt fosmid library 12 0 3 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 12\ parent cloneEndSuper off\ priority 3\ shortLabel ABC12\ subGroups source=agencourt\ track cloneEndABC12\ type bed 12\ visibility hide\ gtexCovAdrenalGland Adren Gland bigWig Adrenal Gland 0 3 143 188 143 199 221 199 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-0126-SM-4VBRL.Adrenal_Gland.RNAseq.bw\ color 143,188,143\ longLabel Adrenal Gland\ parent gtexCov\ shortLabel Adren Gland\ track gtexCovAdrenalGland\ wgEncodeReg4TxnAdrenalGlandPlus Adrenal gland + bigWig Avg. + strand total RNA-seq level of 8 adrenal gland experiments (tissues and primary cells only) 0 3 90 179 68 172 217 161 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/adrenalGlandPlus.bw\ color 90,179,68\ longLabel Avg. + strand total RNA-seq level of 8 adrenal gland experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 3\ shortLabel Adrenal gland +\ track wgEncodeReg4TxnAdrenalGlandPlus\ type bigWig\ genetiSureCytoCghSnp8x60 Agilent GenetiSure Cyto CGH 8x60 bigBed 4 Agilent GenetiSure Cyto CGH 8x60K 085590 20200302 3 3 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/snpCnvArrays/agilent/hg38.GenetiSure_Cyto_CGH_Microarray_8x60K_085590_D_BED_20200302.bb\ longLabel Agilent GenetiSure Cyto CGH 8x60K 085590 20200302\ parent genotypeArrays on\ priority 3\ shortLabel Agilent GenetiSure Cyto CGH 8x60\ track genetiSureCytoCghSnp8x60\ type bigBed 4\ visibility pack\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_fwd AorticSmsToFgf2_00hr00minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward 0 3 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_fwd AorticSmsToFgf2_00hr00minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward 1 3 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ mgrb Australia MGRB 4k WGS vcfTabix SNV Frequencies: Australia Medical Genome Reference Bank - 4,011 WGS 0 3 0 0 0 127 127 127 0 0 0
Description
\\ The Australian\ Medical Genome Reference Bank (MGRB) collected whole-genome sequencing data of 4,011 healthy\ elderly individuals who lived ≥70 years, so the dataset is depleted of damaging genetic\ variants. Age and sex summary graphs are available from\ the MGRB website.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ VCF access can be requested via a form from\ Sydney Genomics.\
\ \Methods
\\ The 4,011 MGRB samples underwent whole-genome sequencing on Illumina HiSeq X instruments at KCCG\ under ISO 15189 accreditation, with paired-end TruSeq DNA Nano libraries sequenced one lane per\ sample. Sequence reads were aligned to the hg38 reference genome assembly with bwa 0.7.15-r1140.\ Variants were called with GATK 4.1.4.0 following the Genome Analysis Toolkit (GATK) best practices\ procedure. A sites-only VCF with only passing variants (FILTER=PASS) was made with bcftools 1.20.\
\\ We received VCF files from m.hobbs@garvan.org.au via a transfer link and imported them.\ The makeDoc file of the track documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were needed; these are available from GitHub.\
\ \References
\\
Lacaze P, Pinese M, Kaplan W, Stone A, Brion MJ, Woods RL, McNamara M, McNeil JJ, Dinger ME, Thomas\
DM.\
\
The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals.\
Rationale and cohort design.\
Eur J Hum Genet. 2019 Feb;27(2):308-316.\
PMID: 30353151; PMC:
Disease(s): $name
Classification: $Classification\ noScoreFilter on\ parent clinGenComp on\ priority 3\ searchIndex name,geneSymbol,HGNCid,MONDOid,Classification\ sepFields MONDOid,SOPversion\ shortLabel ClinGen Validity\ skipFields Mouseover\ track clinGenGeneDisease\ type bigBed 9 +\ urls geneSymbol="https://search.clinicalgenome.org/kb/genes/$$" ClinGenURL="https://search.clinicalgenome.org/kb/gene-validity/$$" HGNCid="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" MONDOid="https://monarchinitiative.org/disease/$$"\ visibility pack\ cons30wayViewelements Conserved Elements bed 4 UCSC 30 Primates - 30 primate genomes aligned with MultiZ by the UCSC Browser Group 1 3 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel UCSC 30 Primates - 30 primate genomes aligned with MultiZ by the UCSC Browser Group\ parent cons30way\ shortLabel Conserved Elements\ track cons30wayViewelements\ view elements\ visibility dense\ cortexNeuron0TD Cortex - Neuron - Z000000TD bigWig Methylation Atlas: Cortex - Neuron - Z000000TD 2 3 138 43 226 196 149 240 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/cortexNeuron0TD.bw\ color 138,43,226\ longLabel Methylation Atlas: Cortex - Neuron - Z000000TD\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 3\ shortLabel Cortex - Neuron - Z000000TD\ subGroups cellType=Neuron dataType=Replicate\ track cortexNeuron0TD\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ cq8Vcf CQ-8 Variants vcfTabix CQ-8 Variants 0 3 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/CQ-8.sort.vcf.gz\ longLabel CQ-8 Variants\ parent highReproVcfs\ shortLabel CQ-8 Variants\ subGroups view=vcfs\ track cq8Vcf\ type vcfTabix\ dbSnp153Mult dbSNP(153) Mult. bigDbSnp Short Genetic Variants from dbSNP Release 153 that Map to Multiple Genomic Loci 1 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153Mult.bb\ defaultGeneTracks knownGene\ longLabel Short Genetic Variants from dbSNP Release 153 that Map to Multiple Genomic Loci\ parent dbSnp153ViewVariants off\ priority 3\ shortLabel dbSNP(153) Mult.\ subGroups view=variants\ track dbSnp153Mult\ dbVar_common_decipher dbVar Curated DECIPHER SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from DECIPHER 3 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_decipher.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from DECIPHER\ parent dbVar_common on\ priority 3\ shortLabel dbVar Curated DECIPHER SVs\ track dbVar_common_decipher\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ decipherPopulation DECIPHER Population CNVs bigBed 9 + DECIPHER: Population CNVs 3 3 0 0 0 127 127 127 0 0 0
Description
\ \\
\
\
NOTE:
\
While the DECIPHER database is \
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions.\
Because the UCSC Genes mappings for CNVs are based on associations from\ RefSeq and UniProt, they are dependent on any interpretations from those\ sources. Furthermore, because many DECIPHER records refer to multiple gene\ names, or syndromes not tightly mapped to individual genes, the associations\ in this track should be treated with skepticism and any conclusions\ based on them should be carefully scrutinized using independent\ resources.\
\Data Display Agreement Notice
\
The CNV/SNV data are only available for display in the Browser, and not for bulk\
download. Access to bulk data may be obtained directly from DECIPHER\
(https://www.deciphergenomics.org/about/data-sharing) and is subject to a\
Data Access Agreement, in which the user certifies that no attempt to\
identify individual patients will be undertaken. The same restrictions\
apply to the public data displayed at UCSC in the UCSC Genome Browser;\
no one is authorized to attempt to identify patients by any means.\
These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\
\The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\
\\ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\
\ The CNVs and SNVs tracks show genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site.
\ \\ The Population CNVs track shows common copy-number variants (CNVs) and their\ population frequencies, lifted over from the hg19 assembly.
\ \Display Conventions and Configuration
\\ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \
\ \\ For the CNVs track, the entries are colored by the type of variant:\
- \
- red for loss \
- blue for gain \
- grey for amplification \
\ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\
\ \\ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\
- \
- black for likely or definitely pathogenic \
- dark grey for uncertain or unknown \
- light grey for likely or definitely benign \
\ For the Population CNVs track, genomic variants are visually differentiated to facilitate quick and\ clear identification. Variants are colored according to their clinical significance and type:\
\- \
- Red - exclusively deletion site. (deletions) \
- Blue - exclusively duplication site. (duplication) \
- Grey - deletions and duplications site. (del/dup) \
\ The Population CNVs track's mouseover tooltip provides the following information\ about the data:\
\- \
- Position: Specifies the chromosomal range of the CNV. \
- Type of CNV: Indicates if the variation is a loss, gain, or\ deletions/duplications(del/dup). \
- Frequency of CNV: Reflects how often the CNV occurs in the sampled\ population. \
- Number of Observations: The count of times this CNV was observed in the\ dataset. \
- Sample Size of Study: The total number of samples examined. \
Method
\\ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\
\ \ \Contact
\\ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\
\ \Data Access
\\ The DECIPHER data access and documentation can be found at\ DECIPHER Downloads.\
\ \References
\\
Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\
Carter NP.\
\
DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\
Am J Hum Genet. 2009 Apr;84(4):524-33.\
PMID: 19344873; PMC:
Type of CNV: $type
Frequency of CNV: $frequency
Number of Observations: $observations
Sample Size of Study: $sample_size
\ noScoreFilter on\ parent decipherContainer\ priority 3\ searchIndex name\ shortLabel DECIPHER Population CNVs\ track decipherPopulation\ type bigBed 9 +\ visibility pack\ dnaMethylation DNA Methylation DNA Methylation 0 3 0 0 0 127 127 127 0 0 0
Description
\\ This container comprises various DNA Methylation tracks from different sources.\ Click on the specific subtracks for detailed descriptions of the data.
\\ The two tracks available are:\
\ \- \
- Human Methylation Atlas Summary (hg38/hg19) - Contains cell-type-specific marker regions\ identified from the atlas, including all unmethylated regions, putative\ enhancers derived from unmethylated regions, and the top 250 most specifically\ unmethylated regions per cell type. \
- Human Methylation Atlas Signals (hg38/hg19) - Contains per-cell-type\ methylation signal tracks (bigWig format) showing methylation beta values (0-1 scale)\ across the genome, with merged tracks combining all replicates per cell type and\ replicate tracks for each individual sample. \
References
\\ Loyfer N, Magenheim J, Peretz A, Cann G, Bredno J, Klochendler A, Fox-Fisher I,\ Shabi-Porat S, Hecht M, Pelet T et al.\ \ A DNA methylation atlas of normal human cell types.\ Nature. 2023 Jan;613(7943):355-364.\ PMID: 36599988\
\ \\ Loyfer N, Rosenski J, Kaplan T.\ \ wgbstools: a computational suite for DNA methylation sequencing data analysis.\ Life Sci Alliance. 2026 Apr;9(4):e202503514.\ PMID: 41611450\
\ regulation 0 group regulation\ html dnaMethylation.html\ longLabel DNA Methylation\ priority 3\ shortLabel DNA Methylation\ superTrack on\ track dnaMethylation\ cons30wayViewphastcons Element Conservation (phastCons) bed 4 UCSC 30 Primates - 30 primate genomes aligned with MultiZ by the UCSC Browser Group 2 3 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel UCSC 30 Primates - 30 primate genomes aligned with MultiZ by the UCSC Browser Group\ parent cons30way\ shortLabel Element Conservation (phastCons)\ track cons30wayViewphastcons\ view phastcons\ visibility full\ ENCFF237KCK_ENCFF700TZZ_ENCFF988QAR_ENCFF796PZW ENCFF237KCK_ENCFF700TZZ_ENCFF988QAR_ENCFF796PZW bigBed 9 + 5 Adrenal gland, female adult (41 years): (1) cCREs 4 3 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF237KCK_ENCFF700TZZ_ENCFF988QAR_ENCFF796PZW.bb\ longLabel Adrenal gland, female adult (41 years): (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 2\ shortLabel ENCFF237KCK_ENCFF700TZZ_ENCFF988QAR_ENCFF796PZW\ subGroups organ=adrenal_gland view=cCREs_view simpleBiosample=adrenal_gland-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCcres\ track ENCFF237KCK_ENCFF700TZZ_ENCFF988QAR_ENCFF796PZW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ encodeCcreCombined ENCODE3 cCREs bigBed 9 + ENCODE3 Registry of candidate Cis-Regulatory Elements (cCREs) 0 3 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$
Description
\\ This track displays the ENCODE Registry of candidate cis-Regulatory Elements (cCREs) \ in the human genome, a total of 926,535 elements identified and classified by the ENCODE Data \ Analysis Center according to biochemical signatures.\ cCREs are the subset of representative DNase hypersensitive sites across ENCODE and\ Roadmap Epigenomics samples that are supported \ by either histone modifications (H3K4me3 and H3K27ac) or CTCF-binding data.\ The Registry of cCREs is one of the core components of the integrative level of the\ ENCODE Encyclopedia of DNA Elements.
\ \\ Additional exploration of the cCRE's and underlying raw ENCODE data is provided by the\ \ SCREEN\ (Search Candidate cis-Regulatory Elements) web tool,\ designed specifically for the Registry, accessible by linkouts from the track details page.\ The cCREs identified in the mouse genome are available in a companion track, \ here.
\ \ \ \Display Conventions and Configuration
\\ CCREs are colored and labeled according to classification by regulatory signature:\
\
| Color | \\ | UCSC label | \ENCODE classification | \ENCODE label | \
|---|---|---|---|---|
| red | \prom | \promoter-like signature | \PLS | |
| orange | \enhP | \proximal enhancer-like signature | \pELS | |
| yellow | \enhD | \distal enhancer-like signature | \dELS | |
| pink | \K4m3 | \DNase-H3K4me3 | \DNase-H3K4me3 | |
| blue | \CTCF | \CTCF-only | \CTCF-only |
\ The DNase-H3K4me3 elements are those with promoter-like biochemical signature that\ are not within 200bp of an annotated TSS.\
\ \Methods
\\ All individual DNase hypersensitive sites (DHSs) identified from 706 DNase-seq experiments\ in humans (a total of 93 million sites from 706 experiments) were iteratively clustered\ and filtered for the highest signal across all experiments, producing \ representative DHSs (rDHSs), with a total of 2.2 million such sites in human.\ The highest signal elements from this set that were also supported by high H3K4me3, H3K27ac \ and/or CTCF ChIP-seq signals were designated cCRE's (a total of 926,535 in human).\
\\ Classification of cCRE's was performed based on the following criteria:\
- \
- cCREs with promoter-like signatures (cCRE-PLS) fall within 200 bp of an annotated GENCODE TSS\ and have high DNase and H3K4me3 signals. \
- cCREs with enhancer-like signatures (cCRE-ELS) have high DNase and H3K27ac with low H3K4me3\ max-Z score if they are within 200 bp of an annotated TSS. The subset of cCREs-ELS within 2 kb\ of a TSS is denoted proximal (cCRE-pELS), while the remaining subset is denoted distal\ (cCRE-dELS). \
- DNase-H3K4me3 cCREs have high H3K4me3 max-Z scores but low H3K27ac max-Z scores and do not\ fall within 200 bp of a TSS. \
- CTCF-only cCREs have high DNase and CTCF and low H3K4me3 and H3K27ac. \
\
\
\ The GENCODE V24 (Ensembl 33) basic gene annotation set was used in this analysis.\ For further detail about the identification and classification of ENCODE cCREs see \ the About page of the\ SCREEN web tool.\
\ \Data Access
\\ The ENCODE accession numbers of the constituent datasets at the\ ENCODE Portal\ are available from the cCRE details page.\
\\ The data in this track can be interactively explored with the \ Table Browser or the \ Data Integrator. \ The data can be accessed from scripts through our \ API, the track name is "encodeCcreCombined".\ \
\
For automated download and analysis, this annotation is stored in a bigBed file that\
can be downloaded from\
our download server.\
The file for this track is called encodeCcreCombined.bb. \
Individual regions or the whole genome annotation can be obtained using our tool \
bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. \
Instructions for downloading source code and binaries can be found\
here.\
The tool can also be used to obtain only features within a given range, e.g.
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/encode3/ccre/encodeCcreCombined.bb -chrom=chr21 -start=0 -end=100000000 stdout
Release Notes
\\ This annotation is based on ENCODE data released on or before September 14, 2018.
\\ Data from the Common fund supported\ Roadmap Epigenomics Mapping Consortium\ (REMC) were included for building the ENCODE cCREs. Please see the 2015 paper on their analysis\ of reference human genomes for more information.
\ \Credits
\\ This dataset was produced by the\ ENCODE Data Analysis Center\ (ZLab at UMass Medical Center). Please check the\ ZLab ENCODE Public Hubs\ for the most updated data.\ Thanks to Henry Pratt, Jill Moore, Michael Purcaro, and Zhiping Weng, PI for providing\ this data.\ Thanks also to the ENCODE Consortium, the ENCODE production laboratories, \ and the ENCODE Data Coordination Center for generating and processing the datasets used here.\
\ \References
\\ ENCODE Project Consortium.\ \ Expanded Encyclopedias of DNA Elements in the Human and Mouse Genomes.\ Nature. 2020 July 30;583(7818):699-710
\ \\
ENCODE Project Consortium.\
\
An integrated encyclopedia of DNA elements in the human genome.\
Nature. 2012 Sep 6;489(7414):57-74.\
PMID: 22955616; PMC:
Classification: $ccre
\ parent cCREs\ pennantIcon snowflake.png ../goldenPath/newsarch.html#011526 "This data represents ENCODE3 cCREs. For the latest data, see the ENCODE4 cCREs track."\ priority 3\ shortLabel ENCODE3 cCREs\ skipFields encodeLabel,ucscLabel,accessionLabel,description\ track encodeCcreCombined\ type bigBed 9 +\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details at ENCODE SCREEN:\ visibility hide\ wgEncodeReg4RnaSeq_ENCFF168OLY ENCSR000AAB + strand bigWig Bladder microvascular endothelial cell male adult (46 years) and male adult (60 years) + strand total RNA-seq signal 2 3 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/efff5fb7-4cd8-4977-a4f7-3ecf26ef1ea7/ENCFF168OLY.bigWig\ color 255,37,41\ longLabel Bladder microvascular endothelial cell male adult (46 years) and male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAB + strand\ track wgEncodeReg4RnaSeq_ENCFF168OLY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF091WNP ENCSR000AHF Peak bigBed 5 MCF-7 TAF1 peaks 4 3 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1b1d1da1-8a86-467d-80da-cf7493f71ced/ENCFF091WNP.bigBed\ labelFields none\ longLabel MCF-7 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AHF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF091WNP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF869RJX ENCSR000AKN Peak bigBed 5 Endothelial cell of umbilical vein male newborn H3K4me3 peak 4 3 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/2e7d00c1-0c90-473c-b82c-c8ae5d02d771/ENCFF869RJX.bigBed\ color 255,0,0\ longLabel Endothelial cell of umbilical vein male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AKN Peak\ track wgEncodeReg4Epigenetics_ENCFF869RJX\ type bigBed 5\ visibility squish\ knownGeneV45 GENCODE V45 bigGenePred knownGenePep knownGeneMrna GENCODE V45 3 3 0 0 0 127 127 127 0 0 0
Description
\\ The GENCODE Genes track (version 45, January 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The following table provides statistics for the v45 release derived from the GTF file that contains\ annotations only on the main chromosomes. More information on how they were generated can be found\ in the GENCODE site.
\ \\
\ \\
\ GENCODE v45 Release Stats \ Genes Observed Transcripts Observed \ Protein-coding genes 19,395 Protein-coding transcripts 89,110 \ Long non-coding RNA genes 20,424 - full length protein-coding 64,028 \ Small non-coding RNA genes 7,565 - partial length protein-coding 25,082 \ Pseudogenes 14,719 Nonsense mediated decay transcripts 21,427 \ Immunoglobulin/T-cell receptor gene segments 648 Long non-coding RNA loci transcripts 59,719 \ Total No of distinct translations 65,357 Genes that have more than one distinct translations 13,600
\
\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding: protein coding transcripts, including polymorphic\ pseudogenes\
- non-coding: non-protein coding transcripts\
- pseudogene: pseudogene transcript annotations\
- problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain) \
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \ \Squishy-pack Display
\\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:
\ Protein_coding genes\- \
- MANE or Ensembl canonical\
- \
- 1st: MANE Select / Ensembl canonical \
- 2nd: MANE Plus Clinical \
\
- Coding biotypes\
- \
- 1st: protein_coding and protein_coding_LoF \
- 2nd: NMDs and NSDs \
- 3rd: retained intron and protein_coding_CDS_not_defined \
\
- Completeness\
- \
- 1st: full length \
- 2nd: CDS start/end not found \
\
- CARS score (only for coding transcripts) \
- Transcript genomic span and length (only for non-coding transcripts) \
- \
- Transcript biotype\
- \
- 1st: transcript biotype identical to gene biotype \
\
- Ensembl canonical \
- GENCODE basic \
- Transcript genomic span \
- Transcript length \
Methods
\\
The GENCODE v45 track was built from the GENCODE downloads file \
gencode.v45.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources\
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney. This version of the track was\ generated by Jonathan Casper.
\ \References
\ \\
Frankish A, Carbonell-Sala S, Diekhans M, Jungreis I, Loveland JE, Mudge JM, Sisu C, Wright JC,\
Arnan C, Barnes I et al.\
\
GENCODE: reference annotation for the human and mouse genomes in 2023.\
Nucleic Acids Res. 2023 Jan 6;51(D1):D942-D949.\
PMID: 36420896; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV45.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV45\ group genes\ html knownGeneV45\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V45\ maxItems 50000\ parent knownGeneArchive\ priority 3\ searchIndex name\ shortLabel GENCODE V45\ squishyPackField rank\ squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)\ squishyPackPoint 1\ track knownGeneV45\ type bigGenePred knownGenePep knownGeneMrna\ visibility pack\ geneHancerInteractionsDoubleElite GH Interactions (DE) bigInteract Interactions between GeneHancer regulatory elements and genes (Double Elite) 2 3 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$Description
\ \\ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. The hg19 genome has a track with the same name, but with\ more subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist \ for hg38.\ \
Problematic Regions
\\ The Problematic Regions track contains the following subtracks:\
- \
- \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ The data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\ \ \
- \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \ \ \
- \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\ \
Highly Reproducible Regions (HighRepro)
\\ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\
\- \
- a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8 \
- a HapMap Trio, samples NA10385, NA12248, NA12249 \
- a Genome in a Bottle sample, NA12878s \
GIAB Problematic Regions
\The Genome in a Bottle (GIAB) Problematic Regions tracks provide stratifications of the\ genome to evaluate variant calls in complex regions. It is designed for use with Global Alliance\ for Genomic Health (GA4GH) benchmarking tools like\ hap.py\ and includes regions with low complexity, segmental duplications, functional regions,\ and difficult-to-sequence areas. Developed in collaboration with GA4GH, the\ Genome in a Bottle (GIAB) consortium, and the\ Telomere-to-Telomere Consortium (T2T), the dataset aims to standardize the\ analysis of genetic variation by offering pre-defined BED files for stratifying true and false\ positives in genomic studies, facilitating accurate assessments in complex areas of the genome.
\ \\ The creation of the GIAB Problematic Regions tracks involves using a pipeline and configuration to\ generate stratification BED files that categorize genomic regions based on specific challenges,\ such as low complexity or difficult mapping, to facilitate accurate benchmarking of variant calls.\ For more information on the pipeline and configuration used, please visit the following webpage:\ \ https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/README.md.\ If you have questions or comments, please write to Justin Zook (jzook@nist.gov).
\ \Panmask Easy 151b Regions
\\ The Panmask Easy 151b Regions subtrack contains a set of sample-agnostic easy regions where\ short-read variant calling reaches high accuracy. Easy regions are derived for variant filtration\ agnostic to individual samples. They are genomic intervals where general variant callers achieve\ high accuracy without sophisticated filtering.
\\ A set of easy regions for ancient DNA variant filtering was generated by selecting 35-mers that\ could not be mapped elsewhere within one mismatch or gap. Read alignments from multiple samples\ were inspected to exclude regions with excessively high or low coverage or those enriched with\ low mapping quality alignments. The easy regions generated through this k-mer uniqueness procedure\ are referred to as pm151:lenient, where "pm" stands for panmask. In addition, low\ complexity regions identified by SDUST were removed.
\The pm151 regions are used to filter spurious variant calls in centromeres, long repeats, and\ other genomic regions where short-read mapping is often problematic. They cover 88.2% of hg38,\ 92.2% of coding regions, and 96.3% of ClinVar pathogenic variants. The track can be used to filter\ variant calls for clinical or research human samples. Like the HighRepro track in this container\ (see above), it shows regions that are easy to sequence, not those that are problematic. The data\ was derived from the HPRC assemblies, and this track presents the 151b-easy panmask set.
\ \Display Conventions and Configuration
\ \\ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\
\ \\ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\
\ \Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \
\
For automated download and analysis, the genome annotation is stored in bigBed files that\
can be downloaded from\
our download server.\
Individual\
regions or the whole genome annotation can be obtained using our tool bigBedToBed\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g. \
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout
\
Methods
\ \\ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\
\ \Credits
\\ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\
\ \References
\\
Amemiya HM, Kundaje A, Boyle AP.\
\
The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\
Sci Rep. 2019 Jun 27;9(1):9354.\
PMID: 31249361; PMC:
\
Dwarshuis N, Kalra D, McDaniel J, Sanio P, Alvarez Jerez P, Jadhav B, Huang WE, Mondal R, Busby B,\
Olson ND et al.\
\
The GIAB genomic stratifications resource for human reference genomes.\
Nat Commun. 2024 Oct 19;15(1):9029.\
PMID: 39424793; PMC:
\
Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA,\
Tezak Z, Lababidi S et al.\
\
Best practices for benchmarking germline small-variant calls in human genomes.\
Nat Biotechnol. 2019 May;37(5):555-560.\
PMID: 30858580; PMC:
\
Li H.\
\
Finding easy regions for short-read variant calling from pangenome data.\
ArXiv. 2025 Aug 8;.\
PMID: 40799803; PMC:
\
Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\
al.\
\
Assessing reproducibility of inherited variants detected with short-read whole genome\
sequencing.\
Genome Biol. 2022 Jan 3;23(1):2.\
PMID: 34980216; PMC:
\ Description
\\
This track collection shows data from \
Single-nucleus cross-tissue molecular reference maps toward\
understanding disease gene function. The dataset covers ~200,000 single nuclei\
from a total of 16 human donors across 25 samples, using 4 different sample preparation\
protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\
frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\
Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\
and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\
and some shared across all tissue types.\
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\
\ \\ Please see the\ GTEx portal\ for further interactive displays and additional data.
\ \Display Conventions and Configuration
\\ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\
\
| Color | \Cell Type | \
|---|---|
| Endothelial | |
| Epithelial | |
| Glia | |
| Immune | |
| Neuron | |
| Stromal | |
| Other |
\ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\
| Color | \Cell Type | \
|---|---|
| Inflammatory Macrophage | |
| Lung Macrophage | |
| Monocyte/Macrophage FCGR3A High | |
| Monocyte/Macrophage FCGR3A Low | |
| Macrophage HLAII High | |
| Macrophage LYVE1 High | |
| Proliferating Macrophage | |
| Dendritic Cell 1 | |
| Dendritic Cell 2 | |
| Mature Dendritic Cell | |
| Langerhans | |
| CD14+ Monocyte | |
| CD16+ Monocyte | |
| LAM-like | |
| Other |
Methods
\\ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\
\ \\ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\
\ \\ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\
\ \UCSC Methods
\\
The gene expression files were downloaded from the\
\
GTEx portal. The UCSC command line utilities matrixClusterColumns,\
matrixToBarChartBed, and bedToBigBed were used to transform\
these into a bar chart format bigBed file that can be visualized.\
The UCSC utilities can be found on\
our download server.\
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the GTEx Consortium for creating and analyzing these data.
\ \References
\\
Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\
Rouhana JM, Waldman J et al.\
\
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\
Science. 2022 May 13;376(6594):eabl4290.\
PMID: 35549429; PMC:
Description
\\ This track displays regions that are likely to be useful as microsatellite\ markers. These are sequences of at least 15 perfect di-nucleotide and \ tri-nucleotide repeats and tend to be highly polymorphic in the\ population.\
\ \Methods
\\ The data shown in this track are a subset of the Simple Repeats track, \ selecting only those \ repeats of period 2 and 3, with 100% identity and no indels and with\ at least 15 copies of the repeat. The Simple Repeats track is\ created using the \ Tandem Repeats Finder. For more information about this \ program, see Benson (1999).
\ \Credits
\\ Tandem Repeats Finder was written by \ Gary Benson.
\ \References
\ \\
Benson G.\
\
Tandem repeats finder: a program to analyze DNA sequences.\
Nucleic Acids Res. 1999 Jan 15;27(2):573-80.\
PMID: 9862982; PMC:
Description
\\ The NMDetective tracks display genome-wide predictions of nonsense-mediated mRNA\ decay (NMD) efficiency from\ Lindeboom et al. 2016.\ NMDetective scores predict whether a premature termination codon (PTC) at a given position\ will trigger NMD and mRNA degradation, or whether the transcript will escape NMD and\ potentially produce a truncated protein.\
\ \\ Scores range from approximately −1 to +1. Positive values indicate that a PTC at\ that position is predicted to trigger NMD (the mRNA is degraded). Negative values indicate\ that the PTC is predicted to escape NMD (the truncated mRNA may be translated into an\ aberrant protein). Values near zero indicate intermediate or uncertain NMD efficiency.\
\ \Subtracks
\| Track | Description |
|---|---|
| NMDetective-A | \Random forest model predicting NMD efficiency for all possible PTCs introduced\ by single-nucleotide variants. Explains ~71% of systematic variance in NMD\ efficiency. |
| NMDetective-B | \Simplified decision tree model for all possible PTCs. Slightly lower accuracy\ (~68% variance explained) but more interpretable, making it suitable for\ clinical applications. |
| NMDetective-A PTC | \Random forest model predicting NMD efficiency specifically for the first\ out-of-frame PTC introduced by frameshifting indel mutations. |
| NMDetective-B PTC | \Decision tree model for the first out-of-frame PTC from frameshifting\ indels. |
Display Conventions and Configuration
\\ Each subtrack is displayed as a signal (bigWig) track. By default, the vertical axis\ ranges from −1 to +1. Regions with positive values (predicted NMD-triggering) are\ shown above the baseline; regions with negative values (predicted NMD escape) are shown\ below.\
\- \
- Blue tracks (NMDetective-A and -B): predictions\ for all possible PTCs from single-nucleotide nonsense variants. \
- Green tracks (NMDetective-A PTC and -B PTC):\ predictions for the first out-of-frame PTC from frameshifting indels. \
Methods
\\ The NMDetective models were trained on somatic nonsense mutation data from 9,769 cancer\ patients and validated with frameshift mutations and germline variants\ (Lindeboom et al. 2019).\ The models incorporate the following features to predict NMD efficiency:\
\- \
- Whether the PTC falls in the last exon \
- Distance to the last 50 nt of the penultimate exon (the EJC-based “50 bp rule”) \
- Distance from the coding start (start-proximal NMD insensitivity) \
- Exon length \
- mRNA half-life \
- Distance to the downstream exon-junction complex \
- Distance to the wild-type stop codon \
\ NMDetective-A (random forest regression) captures non-linear interactions among\ these features and achieves the highest predictive accuracy.\ NMDetective-B (decision tree) applies a simpler rule-based classification that\ is more transparent, with a modest reduction in accuracy.\
\ \\ The predictions were generated for every possible PTC-introducing single-nucleotide\ variant and for the first out-of-frame PTC from every possible single-nucleotide\ frameshifting indel across all human protein-coding transcripts. The original bedGraph\ custom track files were downloaded from the\ NMDetective Figshare page\ resource and converted to bigWig format at UCSC.\
\ \Data Access
\\ The data underlying these tracks can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Rik Lindeboom for providing custom tracks and the original NMDetective data\ on Figshare.\
\ \References
\ \\
Lindeboom RG, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\
Lindeboom RGH, Vermeulen M, Lehner B, Supek F.\
\
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer\
immunotherapy.\
Nat Genet. 2019 Nov;51(11):1645-1651.\
PMID: 31659324; PMC:
Description and display conventions
\ \\ Nuclear mitochondrial DNA segments (NUMTs) are a kind of insertion from the mitochondrion to the\ nucleus, which is an ongoing and frequent process that happens in all eukaryotes. In previous\ studies, NUMTs have been reported to increase genetic diversity, promote gene and genome evolution,\ and generate novel nuclear exons. NUMTs can also affect the accuracy when nuclear genomes are\ assembled.
\\ This track is a collection of Nuclear mitochondrial DNA segments, provided in BED format.
\Notice: Alignments to incompletely assembled or unmapped chromosome locations are omitted\ in this track.
\\ In this track, the BED score is calculated by -10log10(E-value), representing the alignment\ confidence and is reflected in the level of gray. Scores >=100 (E-values <= 1e-10) are\ colored black. It is important to note that when a NUMT is a merged result, the score is taken as the\ highest score among all results.
\ \ \Methods
\ \\ This dataset identifies nuclear mitochondrial genome segments (NUMTs) by comparing nuclear and\ mitochondrial genomes and proteins using LAST alignment tools. The method involves several steps:\ nuclear genome-mitochondrial genome comparison, nuclear genome-mitochondrial protein comparison,\ and exclusion of overlapping nuclear ribosomal RNA regions using maf-Bed and seg-suite tools.\ Results are merged if alignments are consistent across both comparisons, with sequences under 30bp\ excluded. Bedtools and LAST are used throughout the process for efficient alignment and merging.\
\\ For more detailed information on the methods used for detecting NUMTs, please visit the following\ webpage:
\ https://github.com/Koumokuyou/NUMTs\ \Contact
\If you have questions or comments, please write to:\
Huang Muyao, \ \ 2171272903@edu.k.u-tokyo.ac.jp\ \
\ \References
\ \\
Kleine T, Maier UG, Leister D.\
\
DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis.\
Annu Rev Plant Biol. 2009;60:115-38.\
DOI: 10.1146/annurev.arplant.043008.092119; PMID:
\
Zhang GJ, Dong R, Lan LN, Li SF, Gao WJ, Niu HX.\
\
Nuclear Integrants of Organellar DNA Contribute to Genome Structure and Evolution in Plants.\
Int J Mol Sci. 2020 Jan 21;21(3).\
DOI: 10.3390/ijms21030707; PMID:\
31973163; PMC:
\
Yao Y, Frith MC.\
\
Improved DNA-Versus-Protein Homology Search for Protein Fossils.\
IEEE/ACM Trans Comput Biol Bioinform. 2023 May-Jun;20(3):1691-1699.\
DOI: 10.1109/TCBB.2022.3177855; PMID:
\ Frith MC.\ \ A simple method for finding related sequences by adding probabilities of alternative alignments.\ Genome Res. 2024 Sep 13;.\ DOI: 10.1101/gr.279464.124;\ PMID: 39152037\
\ rep 1 bigDataUrl /gbdb/hg38/bbi/nuMtSeq/nuMtSeq_hg38.bb\ group rep\ longLabel Nuclear mitochondrial DNA segments\ priority 3\ scoreMax 100\ shortLabel NuMTs Sequence\ spectrum on\ track nuMtSeq\ type bigBed 6\ omimLocation OMIM Cyto Loci bed 4 OMIM Cytogenetic Loci Phenotypes - Gene Unknown 0 3 0 80 0 127 167 127 0 0 0 http://www.omim.org/entry/Description
\ \\
\
\
\
NOTE:
\
OMIM is intended for use primarily by physicians and other\
professionals concerned with genetic disorders, by genetics researchers, and\
by advanced students in science and medicine. While the OMIM database is\
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions. Further, please be\
sure to click through to omim.org for the very latest, as they are continually \
updating data.
NOTE ABOUT DOWNLOADS:
\
OMIM is the property \
of Johns Hopkins University and is not available for download or mirroring \
by any third party without their permission. Please see \
OMIM\
for downloads.
OMIM is a compendium of human genes and genetic phenotypes. The full-text,\ referenced overviews in OMIM contain information on all known Mendelian\ disorders and over 12,000 genes. OMIM is authored and edited at the\ McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University\ School of Medicine, under the direction of Dr. Ada Hamosh. This database\ was initiated in the early 1960s by Dr. Victor A. McKusick as a catalog\ of Mendelian traits and disorders, entitled Mendelian Inheritance\ in Man (MIM).\
\ \\ The OMIM data are separated into three separate tracks:\
\ \OMIM Alleles \
Variants in the OMIM database that have associated \
dbSNP identifiers. This track is currently unavailable on the hg38 assembly,\
as it depends on dbSNP data that has not been released yet.\
\
OMIM Genes\
The genomic positions of gene entries in the OMIM \
database. The coloring indicates the associated OMIM phenotype map key.\
OMIM Phenotypes - Gene Unknown\
Regions known to be associated with a phenotype, \
but for which no specific gene is known to be causative. This track \
also includes known multi-gene syndromes.\
\ \ \
\ This track shows the cytogenetic locations of phenotype entries in the Online Mendelian\ Inheritance in Man (OMIM) database for which\ the gene is unknown.\
\ \Display Conventions and Configuration
\ \Cytogenetic locations of OMIM entries are displayed as solid\ blocks. The entries are colored according to the OMIM phenotype map key of associated disorders:\ \
- \
- Lighter Green for phenotype map key 1 OMIM records\ - the disorder has been placed on the map based on its association with\ a gene, but the underlying defect is not known.\
- Light Green for phenotype map key 2 OMIM records\ - the disorder has been placed on the map by linkage; no mutation has\ been found.\
- Dark Green for phenotype map key 3 OMIM records\ - the molecular basis for the disorder is known; a mutation has been\ found in the gene.\
- Purple for phenotype map key 4 OMIM records\ - a contiguous gene deletion or duplication syndrome; multiple genes\ are deleted or duplicated causing the phenotype.\
Gene symbols and disease information, when available, are displayed on the details pages.\
\The descriptions of OMIM entries are shown on the main browser display when Full display\ mode is chosen. In Pack mode, the descriptions are shown when mousing over each entry. Items\ displayed can be filtered according to phenotype map key on the track controls page.\
\ \Methods
\\ This track was constructed as follows: \
- \
- The data file genemap.txt from OMIM was loaded into the MySQL table\ omimGeneMap.\
- Entries in genemap.txt having disorder info were parsed and loaded into the\ omimPhenotype table. The phenotype map keys (the numbers (1)(2)(3)(4) from the\ disorder columns) were placed into a separate field.\
- The cytogenetic location data (from the location column in omimGeneMap) were\ parsed and converted into genomic start and end positions based on the cytoBand table.\ These genomic positions, together with the corresponding OMIM IDs, were loaded into the\ omimLocation table.\
- All entries with no associated phenotype map key and all OMIM gene entries as reported in the\ "OMIM Genes" track were then excluded from the omimLocation table.\
Data Access
\\ Because OMIM has only allowed Data queries within individual chromosomes, no download files are\ available from the Genome Browser. Full genome datasets can be downloaded directly from the\ OMIM Downloads page.\ All genome-wide downloads are freely available from OMIM after registration.
\\ If you need the OMIM data in exactly the format of the UCSC Genome Browser,\ for example if you are running a UCSC Genome Browser local installation (a partial "mirror"),\ please create a user account on omim.org and contact OMIM via\ https://omim.org/contact. Send them your OMIM\ account name and request access to the UCSC Genome Browser 'entitlement'. They will\ then grant you access to a MySQL/MariaDB data dump that contains all UCSC\ Genome Browser OMIM tables.
\\ UCSC offers queries within chromosomes from\ Table Browser that include a variety\ of filtering options and cross-referencing other datasets using our\ Data Integrator tool.\ UCSC also has an API\ that can be used to retrieve data in JSON format from a particular chromosome range.
\\ Please refer to our searchable\ mailing list archives\ for more questions and example queries, or our\ Data Access FAQ\ for more information.
\ \Credits
\\ Thanks to OMIM and NCBI for the use of their data. This track was constructed by Fan Hsu,\ Robert Kuhn, and Brooke Rhead of the UCSC Genome Bioinformatics Group.
\ \References
\Amberger J, Bocchini CA, Scott AF, Hamosh A.\ McKusick's Online Mendelian Inheritance in Man (OMIM®).\ Nucleic Acids Res. 2009 Jan;37(Database issue):D793-6. Epub 2008 Oct 8.\
\\ Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA.\ Online Mendelian Inheritance in Man (OMIM), a knowledgebase of\ human genes and genetic disorders.\ Nucleic Acids Res. 2005 Jan 1;33(Database issue):D514-7.\
\ phenDis 1 color 0, 80, 0\ hgsid on\ longLabel OMIM Cytogenetic Loci Phenotypes - Gene Unknown\ noGenomeReason Distribution restrictions by OMIM. See the track documentation for details. You can download the complete OMIM dataset for free from omim.org\ parent omimContainer\ priority 3\ shortLabel OMIM Cyto Loci\ tableBrowser noGenome\ track omimLocation\ type bed 4\ url http://www.omim.org/entry/\ visibility hide\ panelAppTandRep PanelApp GE STRs bigBed 9 + Genomics England PanelApp Short Tandem Repeats 3 3 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/panelApp/tandRep.bb\ filter.version 1\ filterLabel.version Minimum panel version to display\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields hgncSymbol\ longLabel Genomics England PanelApp Short Tandem Repeats\ mouseOver Gene name: $geneNamePanel: $name
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel\ parent panelApp on\ priority 3\ shortLabel PanelApp GE STRs\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField\ track panelAppTandRep\ type bigBed 9 +\ urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" panelID="https://panelapp.genomicsengland.co.uk/panels/$$/" geneSymbol="https://panelapp.genomicsengland.co.uk/panels/entities/$$"\ visibility pack\ wgEncodeGencodePseudoGeneV20 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV22 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV23 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV24 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV25 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV26 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV27 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV28 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV29 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV30 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV31 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV32 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV33 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV34 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV35 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV36 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV37 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV38 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV39 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV40 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV41 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV41\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV42 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 42 (Ensembl 108) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 42 (Ensembl 108)\ parent wgEncodeGencodeV42ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV42\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV43 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 43 (Ensembl 109) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 43 (Ensembl 109)\ parent wgEncodeGencodeV43ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV43\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV44 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 44 (Ensembl 110) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 44 (Ensembl 110)\ parent wgEncodeGencodeV44ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV44\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV45 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 45 (Ensembl 111) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 45 (Ensembl 111)\ parent wgEncodeGencodeV45ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV45\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV46 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 46 (Ensembl 112) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 46 (Ensembl 112)\ parent wgEncodeGencodeV46ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV46\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV47 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 47 (Ensembl 113) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 47 (Ensembl 113)\ parent wgEncodeGencodeV47ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV47\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV48 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 48 (Ensembl 114) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 48 (Ensembl 114)\ parent wgEncodeGencodeV48ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV48\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePseudoGeneV49 Pseudogenes genePred Pseudogene Annotation Set from GENCODE Version 49 (Ensembl 115) 3 3 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel Pseudogene Annotation Set from GENCODE Version 49 (Ensembl 115)\ parent wgEncodeGencodeV49ViewGenes on\ priority 3\ shortLabel Pseudogenes\ subGroups view=aGenes name=Pseudogenes\ track wgEncodeGencodePseudoGeneV49\ trackHandler wgEncodeGencode\ type genePred\ recombMat Recomb. deCODE Mat bigWig Recombination rate: deCODE Genetics, maternal 2 3 0 130 0 127 192 127 0 0 0
Description
\\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\
\ \This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\
\ \Display Conventions and Configuration
\\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\
\ \\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\
\ \Methods
\\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\
\ \The 1000 Genomes genetic map is based on the
As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\
\ \References
\\
1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\
Hurles ME, McVean GA.\
\
A map of human genome variation from population-scale sequencing.\
Nature. 2010 Oct 28;467(7319):1061-73.\
PMID: 20981092; PMC:
\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\
\ map 0 bigDataUrl /gbdb/hg38/recombRate/recombMat.bw\ html recombRate2.html\ longLabel Recombination rate: deCODE Genetics, maternal\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 3\ shortLabel Recomb. deCODE Mat\ track recombMat\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeqPredicted RefSeq Predicted genePred NCBI RefSeq genes, predicted subset (XM_* or XR_*) 1 3 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq genes, predicted subset (XM_* or XR_*)\ parent refSeqComposite off\ priority 3\ shortLabel RefSeq Predicted\ track ncbiRefSeqPredicted\ chainHg19ReMapAxtChain ReMap + axtChain hg19 chain hg19 NCBI ReMap alignments to hg19/GRCh37, joined by axtChain 0 3 0 0 0 127 127 127 0 0 0 map 1 chainLinearGap medium\ chainMinScore 3000\ longLabel NCBI ReMap alignments to hg19/GRCh37, joined by axtChain\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg19\ parent liftHg19\ priority 3\ shortLabel ReMap + axtChain hg19\ track chainHg19ReMapAxtChain\ type chain hg19\ gnomad310XPercentage Sample % > 10X bigWig gnomAD Percentage of Genome Samples with at least 10X Coverage v3.0.1 2 3 195 0 60 225 127 157 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_10.bw\ color 195,0,60\ longLabel gnomAD Percentage of Genome Samples with at least 10X Coverage v3.0.1\ parent gnomad3Coverage off\ priority 3\ shortLabel Sample % > 10X\ track gnomad310XPercentage\ viewLimits 0:1\ gnomad4Exome10XPercentage Sample % > 10X bigWig gnomAD Percentage of Exome Samples with at least 10X Coverage v4.0 2 3 195 0 60 225 127 157 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_10.bw\ color 195,0,60\ longLabel gnomAD Percentage of Exome Samples with at least 10X Coverage v4.0\ parent gnomad4ExomeCoverage off\ priority 3\ shortLabel Sample % > 10X\ track gnomad4Exome10XPercentage\ viewLimits 0:1\ unipLocSignal Signal Peptide bigBed 12 + UniProt Signal Peptides 1 3 255 0 150 255 127 202 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipLocSignal.bb\ color 255,0,150\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Signal Peptides\ mouseOver UniProt record: $uniProtIdPosition: $position
UniProt record name: $status
\ parent uniprot\ priority 3\ shortLabel Signal Peptide\ track unipLocSignal\ type bigBed 12 +\ visibility dense\ spliceAiDonorPlus SpliceAI Donor Plus bigWig 0 1 SpliceAI Splice Donor Sites, Plus Strand 2 3 0 0 0 127 127 127 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/bbi/spliceAi/wildtype/spliceAiDonorPlus.bw\ longLabel SpliceAI Splice Donor Sites, Plus Strand\ parent spliceAIWt on\ priority 3\ shortLabel SpliceAI Donor Plus\ track spliceAiDonorPlus\ type bigWig 0 1\ recount3_srav3h SRA bigBed 9 + recount3 SRA introns 0 3 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/recount3/srav3h.bb\ filter.readcount 10000:2000000000\ filter.size 30:100000\ filterByRange.readcount on\ filterByRange.size on\ filterLabel.readcount Filter by supporting split reads\ filterLabel.size Filter by intron size\ filterLabel.sjPair splice junctions (format GT/AG)\ filterLabel.strand Strand\ filterLimits.readcount 0:2000000000\ filterText.sjPair *\ filterType.sjPair wildcard\ filterType.strand multiple\ filterValues.strand +,-,.\ iframeOptions height='300' width='1000' scrolling='yes'\ iframeUrl https://snaptron.cs.jhu.edu/snaptron-studies/jxn2studies?compilation=srav3h&jid=$$&coords=$S:${-$}\ itemRgb on\ labelFields none\ longLabel recount3 SRA introns\ mouseOver Split read count: $readcount
Splice donor: $donor
Splice acceptor: $acceptor
Intron size: $size bp
Strand: $strand\ parent recount3\ priority 3\ shortLabel SRA\ track recount3_srav3h\ giabSv Structural Variants bigBed 9 + Genome in a Bottle Structural Variants (dbVar nstd175) 3 3 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails varRep 1 bigDataUrl /gbdb/hg38/giab/structuralVariants/giabSv.bb\ itemRgb on\ longLabel Genome in a Bottle Structural Variants (dbVar nstd175)\ mouseOverField _mouseOver\ parent svView\ shortLabel Structural Variants\ subGroups view=sv\ track giabSv\ type bigBed 9 +\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/#VariantDetails\ urlLabel dbVar Variant Details:\ urls dbVarUrl="$$"\ covidHgiGwasR4PvalC1 Tested COVID vars bigLolly 9 + Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020) 0 3 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, phenDis 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasR4.C1.hg38.bb\ longLabel Tested COVID risk variants from the COVID-19 HGI GWAS Analyis C1 (11085 cases, 20 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 3\ shortLabel Tested COVID vars\ track covidHgiGwasR4PvalC1\ hmaSummaryU250 Top 250 UMRs/Cell bigBed 9 . Methylation Atlas: Top 250 unmethylated regions specific to each cell type 1 3 0 0 0 127 127 127 0 0 0 regulation 1 bigDataUrl /gbdb/hg38/dnaMethylationAtlas/hmaSummaryU250.bb\ filterLabel.name Cell/Tissue Type\ filterValues.name Adipocytes,Bladder-Ep,Blood-B,Blood-Granul,Blood-Mono+Macro,Blood-NK,Blood-T,Bone-Osteob,Breast-Basal-Ep,Breast-Basal-Ep:Breast-Luminal-Ep,Breast-Luminal-Ep,Colon-Ep,Colon-Ep:Gastric-Ep:Small-Int-Ep,Colon-Ep:Small-Int-Ep,Colon-Fibro,Colon-Fibro:Heart-Fibro,Dermal-Fibro,Endothel,Epid-Kerat,Eryth-prog,Fallopian-Ep,Fallopian-Ep:Ovary-Ep,Gallbladder,Gastric-Ep,Gastric-Ep:Small-Int-Ep,Head-Neck-Ep,Heart-Cardio,Heart-Cardio:Heart-Fibro,Heart-Cardio:Skeletal-Musc:Smooth-Musc,Heart-Fibro,Kidney-Ep,Liver-Hep,Lung-Ep-Alveo,Lung-Ep-Alveo:Lung-Ep-Bron,Lung-Ep-Bron,Neuron,Neuron:Oligodend,Oligodend,Ovary-Ep,Pancreas-Acinar,Pancreas-Alpha,Pancreas-Alpha:Pancreas-Beta:Pancreas-Delta,Pancreas-Beta,Pancreas-Delta,Pancreas-Duct,Prostate-Ep,Skeletal-Musc,Skeletal-Musc:Smooth-Musc,Small-Int-Ep,Smooth-Musc,Thyroid-Ep\ itemRgb on\ longLabel Methylation Atlas: Top 250 unmethylated regions specific to each cell type\ parent humanMethylationAtlasSummary on\ priority 3\ shortLabel Top 250 UMRs/Cell\ track hmaSummaryU250\ type bigBed 9 .\ visibility dense\ TSS_activity_TPM TSS activity (TPM) bigWig FANTOM5: TSS activity per sample (TPM) 1 3 0 0 0 127 127 127 0 0 0
Description
\\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\
\ \Display Conventions and Configuration
\ \Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \Methods
\Protocol
\Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\
- \
- hCAGE \
- LQhCAGE \
Samples
\Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\
- \
- Primary cell \
- Tissue \
- Cell Line \
- Time course \
- Fractionation \
TSS peaks
\TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\
- \
- TSS (CAGE) peaks\
- \
- the robust peaks \
\
- TSS summary profiles\
- \
- Total counts and TPM (tags per million) in all the samples \
- Maximum counts and TPM among the samples \
\
TSS activity
\\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\
\ \- \
- Categories of individual samples \
- - Cell Line hCAGE \
- - Cell Line LQhCAGE \
- - fractionation hCAGE \
- - Primary cell hCAGE \
- - Primary cell LQhCAGE \
- - Time course hCAGE \
- - Tissue hCAGE \
Data Access
\\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.
\ \Credits
\ \\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.
\ \References
\\
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\
Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\
\
A promoter-level mammalian expression atlas.\
Nature. 2014 Mar 27;507(7493):462-70.\
PMID: 24670764; PMC:
\
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\
N, Daub CO et al.\
\
Unamplified cap analysis of gene expression on a single-molecule sequencer.\
Genome Res. 2011 Jul;21(7):1150-9.\
PMID: 21596820; PMC:
\
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\
Ishikawa-Kato S et al.\
\
Gateways to the FANTOM5 promoter level mammalian expression atlas.\
Genome Biol. 2015 Jan 5;16(1):22.\
PMID: 25723102; PMC:
Description
\\ This track shows multiple alignments of 30 species and measurements of\ evolutionary conservation using\ two methods (phastCons and phyloP) from the\ \ PHAST package, for all thirty species.\ The multiple alignments were generated using multiz and\ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\
\\ PhastCons (which has been used in previous Conservation tracks) is a hidden\ Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\
\\ Another important difference is that phyloP can measure acceleration\ (faster evolution than expected under neutral drift) as well as\ conservation (slower than expected evolution). In the phyloP plots, sites\ predicted to be conserved are assigned positive scores (and shown in blue),\ while sites predicted to be fast-evolving are assigned negative scores (and\ shown in red). The absolute values of the scores represent -log p-values\ under a null hypothesis of neutral evolution. The phastCons scores, by\ contrast, represent probabilities of negative selection and range between 0\ and 1.\
\\ Both phastCons and phyloP treat alignment gaps and unaligned nucleotides as\ missing data.\
\\ See also: lastz parameters and other details \ and chain minimum score and gap parameters used in these alignments.\
\ \\ Missing sequence in the assemblies is highlighted in the track display\ by regions of yellow when zoomed out and Ns displayed at base\ level (see Gap Annotation, below).
\\
\ \ Downloads for data in this track are available:\\
\ Organism Species Release date UCSC version alignment type \ Human Homo sapiens \ Dec. 2013 (GRCh38/hg38) Dec. 2013 (GRCh38/hg38) MAF Net \ Chimp Pan troglodytes \ May 2016 (Pan_tro 3.0/panTro5) May 2016 (Pan_tro 3.0/panTro5) MAF Net \ Bonobo Pan paniscus \ Aug. 2015 (MPI-EVA panpan1.1/panPan2) Aug. 2015 (MPI-EVA panpan1.1/panPan2) MAF Net \ Gorilla Gorilla gorilla gorilla \ Mar. 2016 (GSMRT3/gorGor5) Mar. 2016 (GSMRT3/gorGor5) MAF Net \ Orangutan Pongo pygmaeus abelii \ July 2007 (WUGSC 2.0.2/ponAbe2) July 2007 (WUGSC 2.0.2/ponAbe2) MAF Net \ Gibbon Nomascus leucogenys \ Oct. 2012 (GGSC Nleu3.0/nomLeu3) Oct. 2012 (GGSC Nleu3.0/nomLeu3) MAF Net \ Rhesus Macaca mulatta \ Nov. 2015 (BCM Mmul_8.0.1/rheMac8) Nov. 2015 (BCM Mmul_8.0.1/rheMac8) MAF Net \ Crab-eating macaque Macaca fascicularis \ Jun. 2013 (Macaca_fascicularis_5.0/macFas5) Jun. 2013 (Macaca_fascicularis_5.0/macFas5) MAF Net \ Pig-tailed macaque Macaca nemestrina \ Mar. 2015 (Mnem_1.0/macNem1) Mar. 2015 (Mnem_1.0/macNem1) MAF Net \ Sooty mangabey Cercocebus atys \ Mar. 2015 (Caty_1.0/cerAty1) Mar. 2015 (Caty_1.0/cerAty1) MAF Net \ Baboon Papio anubis \ Feb. 2013 (Baylor Panu_2.0/papAnu3) Feb. 2013 (Baylor Panu_2.0/papAnu3) MAF Net \ Green monkey Chlorocebus sabaeus \ Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) MAF Net \ Drill Mandrillus leucophaeus \ Mar. 2015 (Mleu.le_1.0/manLeu1) Mar. 2015 (Mleu.le_1.0/manLeu1) MAF Net \ Proboscis monkey Nasalis larvatus \ Nov. 2014 (Charlie1.0/nasLar1) Nov. 2014 (Charlie1.0/nasLar1) MAF Net \ Angolan colobus Colobus angolensis palliatus \ Mar. 2015 (Cang.pa_1.0/colAng1) Mar. 2015 (Cang.pa_1.0/colAng1) MAF Net \ Golden snub-nosed monkey Rhinopithecus roxellana \ Oct. 2014 (Rrox_v1/rhiRox1) Oct. 2014 (Rrox_v1/rhiRox1) MAF Net \ Black snub-nosed monkey Rhinopithecus bieti \ Aug. 2016 (ASM169854v1/rhiBie1) Aug. 2016 (ASM169854v1/rhiBie1) MAF Net \ Marmoset Callithrix jacchus \ March 2009 (WUGSC 3.2/calJac3) March 2009 (WUGSC 3.2/calJac3) MAF Net \ Squirrel monkey Saimiri boliviensis \ Oct. 2011 (Broad/saiBol1) Oct. 2011 (Broad/saiBol1) MAF Net \ White-faced sapajou Cebus capucinus imitator \ Apr. 2016 (Cebus_imitator-1.0/cebCap1) Apr. 2016 (Cebus_imitator-1.0/cebCap1) MAF Net \ Ma's night monkey Aotus nancymaae \ Jun. 2017 (Anan_2.0/aotNan1) Jun. 2017 (Anan_2.0/aotNan1) MAF Net \ Tarsier Tarsius syrichta \ Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) MAF Net \ Mouse lemur Microcebus murinus \ Feb. 2017 (Mmur_3.0/micMur3) Feb. 2017 (Mmur_3.0/micMur3) MAF Net \ Coquerel's sifaka Propithecus coquereli \ Mar. 2015 (Pcoq_1.0/proCoq1) Mar. 2015 (Pcoq_1.0/proCoq1) MAF Net \ Black lemur Eulemur macaco \ Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1) Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1) MAF Net \ Sclater's lemur Eulemur flavifrons \ Aug. 2015 (Eflavifronsk33QCA/eulFla1) Aug. 2015 (Eflavifronsk33QCA/eulFla1) MAF Net \ Bushbaby Otolemur garnettii \ Mar. 2011 (Broad/otoGar3) Mar. 2011 (Broad/otoGar3) MAF Net \ Mouse Mus musculus \ Dec. 2011 (GRCm38/mm10) Dec. 2011 (GRCm38/mm10) MAF Net \ Dog Canis lupus familiaris \ Sep. 2011 (Broad CanFam3.1/canFam3) Sep. 2011 (Broad CanFam3.1/canFam3) MAF Net \ Armadillo Dasypus novemcinctus \ Dec. 2011 (Baylor/dasNov3) Dec. 2011 (Baylor/dasNov3) MAF Net
\ Table 1. Genome assemblies included in the 30-way Conservation track.\
- \
- \ Multiz alignments (MAF format), and phylogenetic trees\
- \ PhyloP conservation (WIG format)\
- \ PhastCons conservation (WIG format)\
Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ value of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ The names of selected species are colored according to their clade,\ alternating between blue and green.\ Configuration buttons are available to select all of the species\ (Set all), deselect all of the species (Clear all), or\ use the default settings (Set defaults).\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment.\ The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\
- \
- \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
- \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
- \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
- Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\
\ Codon translation uses the following gene tracks as the basis for\ translation, depending on the species chosen (Table 2).\ \
\ \\
\ Table 2. Gene tracks used for codon translation.\\ Gene Track Species \ Known Genes human, mouse \ Ensembl Genes v78 baboon, bushbaby, chimp, dog, gorilla, marmoset, mouse lemur, orangutan, tree shrew \ RefSeq crab-eating macaque, rhesus \ no annotation bonobo, green monkey, gibbon, proboscis monkey, golden snub-nosed monkey, squirrel monkey, tarsier
Methods
\\ Pairwise alignments with the human genome were generated for\ each species using lastz from repeat-masked genomic sequence.\ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\ For more information about the chaining and netting process and\ parameters for each species, see the description pages for the Chain and Net\ tracks.
\\ An additional filtering step was introduced in the generation of the 30-way\ conservation track to reduce the number of paralogs and pseudogenes from the\ high-quality assemblies and the suspect alignments from the low-quality\ assemblies.\
\\
\ \\
\ Table 3. Type of Net alignment\\ type of net alignment Species \ Syntenic Net baboon, chimp, dog, gibbon, green monkey, crab-eating macaque, marmoset, mouse, orangutan, rhesus \ Reciprocal best Net bushbaby, bonobo, gorilla, golden snub-nosed monkey, mouse lemur, proboscis monkey, squirrel monkey, tarsier, tree shrew
\ The resulting best-in-genome pairwise alignments\ were progressively aligned using multiz/autoMZ,\ following the tree topology diagrammed above, to produce multiple alignments.\ The multiple alignments were post-processed to\ add annotations indicating alignment gaps, genomic breaks,\ and base quality of the component sequences.\ The annotated multiple alignments, in MAF format, are available for\ bulk download.\ An alignment summary table containing an entry for each\ alignment block in each species was generated to improve\ track display performance at large scales.\ Framing tables were constructed to enable\ visualization of codons in the multiple alignment display.
\ \Phylogenetic Tree Model
\\ Both phastCons and phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 30-way alignment\ (msa_view). The 4d sites were derived from the Xeno RefSeq gene set,\ filtered to select single-coverage long transcripts.\
\\ This same tree model was used in the phyloP calculations, however their\ background frequencies were modified to maintain reversibility.\ The resulting tree model for\ all species.\
\PhastCons Conservation
\\ The phastCons program computes conservation scores based on a phylo-HMM, a\ type of probabilistic model that describes both the process of DNA\ substitution at each site in a genome and the way this process changes from\ one site to the next (Felsenstein and Churchill 1996, Yang 1995, Siepel and\ Haussler 2005). PhastCons uses a two-state phylo-HMM, with a state for\ conserved regions and a state for non-conserved regions. The value plotted\ at each site is the posterior probability that the corresponding alignment\ column was "generated" by the conserved state of the phylo-HMM. These\ scores reflect the phylogeny (including branch lengths) of the species in\ question, a continuous-time Markov model of the nucleotide substitution\ process, and a tendency for conservation levels to be autocorrelated along\ the genome (i.e., to be similar at adjacent sites). The general reversible\ (REV) substitution model was used. Unlike many conservation-scoring programs,\ phastCons does not rely on a sliding window\ of fixed size; therefore, short highly-conserved regions and long moderately\ conserved regions can both obtain high scores.\ More information about\ phastCons can be found in Siepel et al. (2005).
\\ The phastCons parameters used were: expected-length=45,\ target-coverage=0.3, rho=0.3.
\ \PhyloP Conservation
\\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements\ (http://compgen.cshl.edu/phast/).\ Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode CONACC).\
\SSREV PhyloP Conservation
\\ A second phyloP track, Cons 30 Mam (SSREV), computes single-base\ conservation scores using the strand-symmetric reversible (SSREV)\ substitution model rather than the standard REV model. The default REV\ model is not strand-symmetric, which can bias single-base conservation\ scores depending on the strand of the underlying transcript -- most\ visible at splice sites and other strand-specific motifs (Pollard\ et al. 2010, supplementary section 2.4). The SSREV model\ enforces equal substitution rates between complementary base pairs, so\ a splice donor on the plus strand (GT...) and on the minus\ strand (...AC) receive equivalent conservation scores.\
\\
The SSREV track uses the same alignment, tree topology, score range, and\
phyloP options (--method LRT --mode CONACC --wig-scores) as\
the REV phyloP track; only the substitution model differs. Use the SSREV\
track for analyses sensitive to transcript strand (splice sites, miRNA\
seed regions, antisense regulatory features); the REV track remains\
appropriate for general genome-wide conservation analysis.\
Conserved Elements
\\ The conserved elements were predicted by running phastCons with the\ --viterbi option. The predicted elements are segments of the alignment\ that are likely to have been "generated" by the conserved state of the\ phylo-HMM. Each element is assigned a log-odds score equal to its log\ probability under the conserved model minus its log probability under the\ non-conserved model. The "score" field associated with this track contains\ transformed log-odds scores, taking values between 0 and 1000. (The scores\ are transformed using a monotonic function of the form a * log(x) + b.) The\ raw log odds scores are retained in the "name" field and can be seen on the\ details page or in the browser when the track's display mode is set to\ "pack" or "full".\
\ \Credits
\This track was created using the following programs:\
- \
- Alignment tools: blastz and multiz by Minmei Hou, Scott Schwartz and Webb\ Miller of the Penn State Bioinformatics Group\
- Chaining and Netting: axtChain, chainNet by Jim Kent at UCSC\
- Conservation scoring: phastCons, phyloP, phyloFit, tree_doctor, msa_view and\ other programs in PHAST by\ Adam Siepel at Cold Spring Harbor Laboratory (original development\ done at the Haussler lab at UCSC).\
- MAF Annotation tools: mafAddIRows by Brian Raney, UCSC; mafAddQRows\ by Richard Burhans, Penn State; genePredToMafFrames by Mark Diekhans, UCSC\
- Tree image generator: phyloPng by Galt Barber, UCSC\
- Conservation track display: Kate Rosenbloom, Hiram Clawson (wiggle\ display), and Brian Raney (gap annotation and codon framing) at UCSC\
The phylogenetic tree is based on Murphy et al. (2001) and general\ consensus in the vertebrate phylogeny community as of March 2007.\
\ \References
\ \Phylo-HMMs, phastCons, and phyloP:
\ \\ Felsenstein J, Churchill GA.\ A Hidden Markov Model approach to\ variation among sites in rate of evolution.\ Mol Biol Evol. 1996 Jan;13(1):93-104.\ PMID: 8583911\
\ \\
Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\
\
Detection of nonneutral substitution rates on mammalian phylogenies.\
Genome Res. 2010 Jan;20(1):110-21.\
PMID: 19858363; PMC:
\
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K,\
Clawson H, Spieth J, Hillier LW, Richards S, et al.\
Evolutionarily conserved elements in vertebrate, insect, worm,\
and yeast genomes.\
Genome Res. 2005 Aug;15(8):1034-50.\
PMID: 16024819; PMC:
\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351\
\ \\
Yang Z.\
A space-time process model for the evolution of DNA\
sequences.\
Genetics. 1995 Feb;139(2):993-1005.\
PMID: 7713447; PMC:
Chain/Net:
\\
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\
Evolution's cauldron:\
duplication, deletion, and rearrangement in the mouse and human genomes.\
Proc Natl Acad Sci U S A. 2003 Sep 30;100(30):11484-9.\
PMID: 14500911; PMC:
Multiz:
\\
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM,\
Baertsch R, Rosenbloom K, Clawson H, Green ED, et al.\
Aligning multiple genomic sequences with the threaded blockset aligner.\
Genome Res. 2004 Apr;14(4):708-15.\
PMID: 15060014; PMC:
\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\
\ \Blastz:
\\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\
\ \\
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\
Haussler D, Miller W.\
Human-mouse alignments with BLASTZ.\
Genome Res. 2003 Jan;13(1):103-7.\
PMID: 12529312; PMC:
Phylogenetic Tree:
\\ Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E,\ Ryder OA, Stanhope MJ, de Jong WW, Springer MS.\ Resolution of the early placental mammal radiation using Bayesian phylogenetics.\ Science. 2001 Dec 14;294(5550):2348-51.\ PMID: 11743200\
\ compGeno 1 compositeTrack on\ dragAndDrop subTracks\ group compGeno\ longLabel UCSC 30 Primates - 30 primate genomes aligned with MultiZ by the UCSC Browser Group\ priority 3\ shortLabel UCSC 30 Primates\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ track cons30way\ type bed 4\ visibility hide\ umap50 Umap S50 bigBed 6 Single-read mappability with 50-mers 0 3 80 120 240 167 187 247 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k50.Unique.Mappability.bb\ color 80,120,240\ longLabel Single-read mappability with 50-mers\ parent umapBigBed off\ priority 3\ shortLabel Umap S50\ subGroups view=SR\ track umap50\ visibility hide\ gnomadGenomesVariantsV3_1_1 gnomAD v3.1.1 bigBed 9 + Genome Aggregation Database (gnomAD) Genome Variants v3.1.1 0 3.1 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$Description
\ \gnomAD v3.1.1
\\ gnomAD 3 was a genomes-only release. The gnomAD v3.1.1 track is the current version of gnomAD 3\ and shows variants from 76,156 whole genomes (and no exomes), all mapped to the GRCh38/hg38\ reference sequence. 4,454 genomes were added to the number of genomes in the previous v3 release.\ For more detailed information on gnomAD v3.1, see the related blog post.\ A bugfix to v3.1 resulted in gnomAD v3.1.1, see\ changelog.\ Do not use gnomAD v3.1 anymore, we will remove the 3.1 track soon.\
\ \gnomAD v3.1 (Deprecated)
\\ The gnomAD v3.1 track is deprecated. Please use v3.1.1 instead.\
\ \gnomAD v3
\\ The gnomAD v3 track shows variants from 71,702 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. For more detailed\ information on gnomAD v3, see the related blog post.
\ \\ For questions on the gnomAD data, also see the gnomAD FAQ.
\\ More details on the Variant type(s) can be found on the Sequence Ontology page.
\ \Display Conventions and Configuration
\ \gnomAD v3.1.1
\\ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.
\ \- \
- There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
- There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
- Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
- The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
- The VEP annotation is shown as a table instead of spread across multiple fields.\
- Intergenic variants have not been pre-filtered.\
gnomAD v3.1
\\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\
\ \\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\
\ \\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\
\ \\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\
| pLoF | |
| Missense | |
| Synonymous | |
| Other |
Label Options
\\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\
\ \Filtering Options
\\ Three filters are available for these tracks:\
\- \
- FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
- Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
- Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
UCSC Methods
\\ The gnomAD v3.1.1 data is unfiltered.
\ \\ For the deprecated v3.1 update only, in order to cut\ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\
- \
- Regulatory Region Variants\
- Downstream/Upstream Gene Variants\
- Transcription Factor Binding Site Variants\
\
For the full steps used to create the gnomAD tracks at UCSC, please see the\
Data Access
\ \\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\
\
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1 12416 12417 854246d79dc5d02dcdbd5f5438542b6e [..omitted for brevity..] chr1-12417-G-A 67293 902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e {"DDX11L1": {"cons": ["non_coding_transcript_variant", [..omitted for brevity..]\
\
\
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\ varRep 1 bigDataUrl /gbdb/hg38/gnomAD/v3.1.1/genomes.bb\ dataVersion Release v3.1.1 (March 20, 2021) and v3.1 chrM Release (November 17, 2020)\ defaultLabelFields _displayName\ detailsDynamicTable _jsonVep|Variant Effect Predictor,_jsonPopTable|Population Frequencies,_jsonHapTable|Haplotype Frequencies\ detailsTabUrls _dataOffset=/gbdb/hg38/gnomAD/v3.1.1/gnomad.v3.1.1.details.tab.gz\ filter.AF 0.0\ filterLabel.AF Minor Allele Frequency Filter\ filterType.AC_non_cancer single\ filterType.FILTER multipleListAnd\ filterType.variation_type multipleListOr\ filterValues.AC_non_cancer Non-Cancer\ filterValues.FILTER PASS,InbreedingCoeff,RF,AC0,AS_VQSR,indel_stack (chrM only),npg (chrM only)\ filterValues.annot pLoF,missense,synonymous,other\ filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,start_retained_variant,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation\ filterValuesDefault.AC_non_cancer Non-Cancer\ filterValuesDefault.FILTER PASS\ filterValuesDefault.annot pLoF,missense,synonymous\ html gnomadV3.html\ itemRgb on\ labelFields rsId,_displayName\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v3.1.1\ maxItems 50000\ mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt)rsId: $rsId
Genes: $genes
Annotation: $annot
FILTER: $FILTER
Var type: $variation_type\ parent gnomadVariants\ priority 3.1\ searchIndex name,_displayName,rsId\ shortLabel gnomAD v3.1.1\ skipEmptyFields on\ skipFields _displayName\ track gnomadGenomesVariantsV3_1_1\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$
Description
\ \gnomAD v3.1.1
\\ gnomAD 3 was a genomes-only release. The gnomAD v3.1.1 track is the current version of gnomAD 3\ and shows variants from 76,156 whole genomes (and no exomes), all mapped to the GRCh38/hg38\ reference sequence. 4,454 genomes were added to the number of genomes in the previous v3 release.\ For more detailed information on gnomAD v3.1, see the related blog post.\ A bugfix to v3.1 resulted in gnomAD v3.1.1, see\ changelog.\ Do not use gnomAD v3.1 anymore, we will remove the 3.1 track soon.\
\ \gnomAD v3.1 (Deprecated)
\\ The gnomAD v3.1 track is deprecated. Please use v3.1.1 instead.\
\ \gnomAD v3
\\ The gnomAD v3 track shows variants from 71,702 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. For more detailed\ information on gnomAD v3, see the related blog post.
\ \\ For questions on the gnomAD data, also see the gnomAD FAQ.
\\ More details on the Variant type(s) can be found on the Sequence Ontology page.
\ \Display Conventions and Configuration
\ \gnomAD v3.1.1
\\ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.
\ \- \
- There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
- There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
- Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
- The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
- The VEP annotation is shown as a table instead of spread across multiple fields.\
- Intergenic variants have not been pre-filtered.\
gnomAD v3.1
\\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\
\ \\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\
\ \\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\
\ \\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\
| pLoF | |
| Missense | |
| Synonymous | |
| Other |
Label Options
\\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\
\ \Filtering Options
\\ Three filters are available for these tracks:\
\- \
- FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
- Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
- Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
UCSC Methods
\\ The gnomAD v3.1.1 data is unfiltered.
\ \\ For the deprecated v3.1 update only, in order to cut\ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\
- \
- Regulatory Region Variants\
- Downstream/Upstream Gene Variants\
- Transcription Factor Binding Site Variants\
\
For the full steps used to create the gnomAD tracks at UCSC, please see the\
Data Access
\ \\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\
\
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1 12416 12417 854246d79dc5d02dcdbd5f5438542b6e [..omitted for brevity..] chr1-12417-G-A 67293 902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e {"DDX11L1": {"cons": ["non_coding_transcript_variant", [..omitted for brevity..]\
\
\
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\ varRep 1 bigDataUrl /gbdb/hg38/gnomAD/v3.1/variants/genomes.bb\ dataVersion Release 3.1 (October 29, 2020)\ defaultLabelFields name\ detailsStaticTable Population Frequencies|/gbdb/hg38/gnomAD/v3.1/variants/v3.1.genomes.popTable.txt\ filter.AF 0.0\ filterLabel.AF Minor Allele Frequency Filter\ filterType.FILTER multipleListAnd\ filterType.annot multiple\ filterType.variation_type multipleListOr\ filterValues.FILTER PASS,InbreedingCoeff,RF,AC0\ filterValues.annot pLoF,missense,synonymous,other\ filterValues.variation_type 3_prime_UTR_variant,5_prime_UTR_variant,NMD_transcript_variant,TFBS_ablation,TF_binding_site_variant,coding_sequence_variant,frameshift_variant,incomplete_terminal_codon_variant,inframe_deletion,inframe_insertion,intergenic_variant,intron_variant,mature_miRNA_variant,missense_variant,non_coding_transcript_exon_variant,non_coding_transcript_variant,protein_altering_variant,splice_acceptor_variant,splice_donor_variant,splice_region_variant,start_lost,stop_gained,stop_lost,stop_retained_variant,synonymous_variant,transcript_ablation\ filterValuesDefault.FILTER PASS\ html gnomadV3.html\ itemRgb on\ labelFields name,rsId\ longLabel Deprecated: Genome Aggregation Database (gnomAD) Genome Variants v3.1\ maxItems 50000\ mouseOver Position: $chrom:${chromStart}-${chromEnd} ($ref/$alt)rsId: $rsId
Genes: $genes
Type: $annot
Tag: $FILTER
Allele Frequency: $AF ($AC/$AN)\ parent gnomadVariants\ priority 3.2\ sepFields AC_afr\ shortLabel Deprecated: gnomAD v3.1\ track gnomadGenomesVariantsV3_1\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$s-$<_startPos>-$-$
Description
\ \gnomAD v3.1.1
\\ gnomAD 3 was a genomes-only release. The gnomAD v3.1.1 track is the current version of gnomAD 3\ and shows variants from 76,156 whole genomes (and no exomes), all mapped to the GRCh38/hg38\ reference sequence. 4,454 genomes were added to the number of genomes in the previous v3 release.\ For more detailed information on gnomAD v3.1, see the related blog post.\ A bugfix to v3.1 resulted in gnomAD v3.1.1, see\ changelog.\ Do not use gnomAD v3.1 anymore, we will remove the 3.1 track soon.\
\ \gnomAD v3.1 (Deprecated)
\\ The gnomAD v3.1 track is deprecated. Please use v3.1.1 instead.\
\ \gnomAD v3
\\ The gnomAD v3 track shows variants from 71,702 whole genomes (and no exomes), all mapped to the\ GRCh38/hg38 reference sequence. For more detailed\ information on gnomAD v3, see the related blog post.
\ \\ For questions on the gnomAD data, also see the gnomAD FAQ.
\\ More details on the Variant type(s) can be found on the Sequence Ontology page.
\ \Display Conventions and Configuration
\ \gnomAD v3.1.1
\\ The gnomAD v3.1.1 track version follows the same conventions and configuration as the v3.1 track,\ except as noted below.
\ \- \
- There is a Non-cancer filter used to exclude/include variants from samples of individuals who\ were not ascertained for having cancer in a cancer study.\
- There are additional FILTER field filters: AS_VQSR, indel_stack (chrM only), and npg (chrM only).\
- Where possible, variants overlapping multiple transcripts/genes have been collapsed into one\ variant, with additional information available on the details page, which has roughly halved the\ number of items in the bigBed.\
- The bigBed has been split into two files, one with the information necessary for the track\ display, and one with the information necessary for the details page. For more information on\ this data format, please see the Data Access section below.\
- The VEP annotation is shown as a table instead of spread across multiple fields.\
- Intergenic variants have not been pre-filtered.\
gnomAD v3.1
\\ By default, a maximum of 50,000 variants can be displayed at a time (before applying the filters\ described below), before the track switches to dense display mode.\
\ \\ Mouse hover on an item will display many details about each variant, including the affected gene(s),\ the variant type, and annotation (missense, synonymous, etc).\
\ \\ Clicking on an item will display additional details on the variant, including a population frequency\ table showing allele count in each sub-population.\
\ \\ Following the conventions on the gnomAD browser, items are shaded according to their Annotation\ type:\
| pLoF | |
| Missense | |
| Synonymous | |
| Other |
Label Options
\\ To maintain consistency with the gnomAD website, variants are by default labeled according\ to their chromosomal start position followed by the reference and alternate alleles,\ for example "chr1-1234-T-CAG". dbSNP rsID's are also available as an additional\ label, if the variant is present in dbSnp.\
\ \Filtering Options
\\ Three filters are available for these tracks:\
\- \
- FILTER: Used to exclude/include variants that failed Random Forest\ (RF), Inbreeding Coefficient (Inbreeding Coeff), or Allele Count (AC0) filters. The\ PASS option is used to include/exclude variants that pass all of the RF,\ InbreedingCoeff, and AC0 filters, as denoted in the original VCF.\
- Annotation type: Used to exclude/include variants that are annotated as\ Probability Loss of Function (pLoF), Missense, Synonymous, or Other, as\ annotated by VEP version 85 (GENCODE v19).\
- Variant Type: Used to exclude/include variants according to the type of\ variation, as annotated by VEP v85.\
UCSC Methods
\\ The gnomAD v3.1.1 data is unfiltered.
\ \\ For the deprecated v3.1 update only, in order to cut\ down on the amount of displayed data, the following variant\ types have been filtered out, but are still viewable in the gnomAD browser:\
- \
- Regulatory Region Variants\
- Downstream/Upstream Gene Variants\
- Transcription Factor Binding Site Variants\
\
For the full steps used to create the gnomAD tracks at UCSC, please see the\
Data Access
\ \\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ For the v3.1.1 variants in particular, the underlying bigBed only contains enough information\ necessary to use the track in the browser. The extra data like VEP annotations and CADD scores are\ available in the same directory\ as the bigBed but in the files gnomad.v3.1.1.details.tab.gz and\ gnomad.v3.1.1.details.tab.gz.gzi. The gnomad.v3.1.1.details.tab.gz contains the gzip\ compressed extra data in JSON format, and the .gzi file is available to speed searching of\ this data. Each variant has an associated md5sum in the name field of the bigBed which can be\ used along with the _dataOffset and _dataLen fields to get the associated external data, as show\ below:\
\
# find item of interest:\
bigBedToBed genomes.bb stdout | head -4 | tail -1\
chr1 12416 12417 854246d79dc5d02dcdbd5f5438542b6e [..omitted for brevity..] chr1-12417-G-A 67293 902\
\
# use the final two fields, _dataOffset and _dataLen (add one to _dataLen to include a newline), to get the extra data:\
bgzip -b 67293 -s 903 gnomad.v3.1.1.details.tab.gz\
854246d79dc5d02dcdbd5f5438542b6e {"DDX11L1": {"cons": ["non_coding_transcript_variant", [..omitted for brevity..]\
\
\
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\ varRep 1 bigDataUrl /gbdb/hg38/gnomAD/vcf/gnomad.genomes.r3.0.sites.vcf.gz\ configureByPopup off\ dataVersion Release 3.0 (October 16, 2019)\ html gnomadV3.html\ longLabel Genome Aggregation Database (gnomAD) Genome Variants v3\ maxWindowToDraw 200000\ parent gnomadVariants\ priority 3.3\ shortLabel gnomAD v3\ showHardyWeinberg on\ track gnomadGenomesVariantsV3\ type vcfTabix\ url http://gnomad.broadinstitute.org/variant/$s-$Description
\Agilent Arrays
\\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\
\Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\
\ \\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\
\ \Illumina 450k and 850k Methylation Arrays
\\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks, not the probe locations themselves. Contact us\ or Illumina if you need the probe locations directly. More information about\ the arrays can be found on the\ Infinium MethylationEPIC Kit website.\
\ Note: The 450k track on hg38 contains 128,989 regions representing the target regions, not the probes\ themselves.
\ \Illumina CytoSNP 850K Probe Array
\\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \
\ \Affymetrix Cytoscan HD GeneChip Array
\\ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\
\ \Bionano DLE-1 CTTAAG sites
\ \\ Bionano Laboratories provides access to Optical Genome Mapping (OGM) data for projects across a variety of\ applications for researchers, clinicians, and pharmaceutical companies.
\This track shows the CTTAAG sites used by the \ Bionano Optical Genome Mapping system,\ an assay to detect structural variants.\
\ \Display Conventions and Configuration
\ \\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \ \Methods
\\ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.
\\ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.
\\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\
\\ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\
\\ The Bionano track was created by receiving the BED files from\ \ apang@bionano.\ com\ \ and converted to bigBed files using the bedToBigBed tool.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the Agilent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.
\\ Thanks to Andy Pang from Bionano Genomics for providing the BED data file.
\ varRep 1 bigDataUrl /gbdb/hg38/bbi/illumina/illuminaEPICv2.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina EPIC v2 Methylation Array\ mouseOver Probe ID: $IlluminaNameAddress ID: $addressAID
Probe sequence in column: $alleleAProbeSeq
rsID: $sNPID\ noScoreFilter on\ parent genotypeArrays on\ priority 3.5\ shortLabel Illumina EPIC v2\ track epicV2illuminaMethylation\ type bigBed 12 +\ visibility pack\ netGalVar1 Malayan flying lemur Net netAlign galVar1 chainGalVar1 Malayan flying lemur (Jun. 2014 (G_variegatus-3.0.2/galVar1)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Malayan flying lemur (Jun. 2014 (G_variegatus-3.0.2/galVar1)) Alignment Net\ otherDb galVar1\ parent placentalChainNetViewnet off\ shortLabel Malayan flying lemur Net\ subGroups view=net species=s006 clade=c00\ track netGalVar1\ type netAlign galVar1 chainGalVar1\ netMelGal5 Turkey Net netAlign melGal5 chainMelGal5 Turkey (Nov. 2014 (Turkey_5.0/melGal5)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Turkey (Nov. 2014 (Turkey_5.0/melGal5)) Alignment Net\ otherDb melGal5\ parent vertebrateChainNetViewnet off\ shortLabel Turkey Net\ subGroups view=net species=s006 clade=c01\ track netMelGal5\ type netAlign melGal5 chainMelGal5\ netPanPan3 Bonobo Net netAlign panPan3 chainPanPan3 Bonobo (May 2020 (Mhudiblu_PPA_v0/panPan3)) Alignment Net 1 4 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Bonobo (May 2020 (Mhudiblu_PPA_v0/panPan3)) Alignment Net\ otherDb panPan3\ parent primateChainNetViewnet off\ shortLabel Bonobo Net\ subGroups view=net species=s007b clade=c00\ track netPanPan3\ type netAlign panPan3 chainPanPan3\ wgEncodeGencode2wayConsPseudoV20 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV20\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV22 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV23 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV24 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV25 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV26 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV27 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV28 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV29 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV30 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV31 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV32 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV33 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV34 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV35 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV36 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV37 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV38 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV39 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV40 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencode2wayConsPseudoV41 2-way Pseudogenes genePred 2-way Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107) 0 4 255 51 255 255 153 255 0 0 0 genes 1 color 255,51,255\ longLabel 2-way Pseudogene Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41View2Way off\ priority 4\ shortLabel 2-way Pseudogenes\ subGroups view=b2-way name=yTwo-way\ track wgEncodeGencode2wayConsPseudoV41\ trackHandler wgEncodeGencode\ type genePred\ phyloP447wayLRT 447 phyloP primates LRT bigWig -20 1.951 447 mammals / 233 primates Basewise Conservation by PhyloP, primates subset LRT 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phyloP447way/hg38.phyloP447wayLRT.bw\ color 60,60,140\ configurable on\ logo on\ longLabel 447 mammals / 233 primates Basewise Conservation by PhyloP, primates subset LRT\ maxHeightPixels 100:50:11\ noInherit on\ parent cons447wayViewphyloP\ priority 4\ shortLabel 447 phyloP primates LRT\ spanList 1\ subGroups view=phyloP\ track phyloP447wayLRT\ type bigWig -20 1.951\ viewLimits -4.5:2\ windowingFunction mean\ phyloP470wayBW 470 phyloP bigWig -20 11.936 470 mammals Basewise Conservation by PhyloP 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phyloP470way/hg38.phyloP470way.bw\ color 60,60,140\ configurable on\ logoMaf https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470way.bigMaf\ longLabel 470 mammals Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ parent cons470wayViewphyloP\ priority 4\ shortLabel 470 phyloP\ spanList 1\ subGroups view=phyloP\ track phyloP470wayBW\ type bigWig -20 11.936\ viewLimits -4.5:7.5\ windowingFunction mean\ encTfChipPkENCFF330OCU A549 CBX8 narrowPeak Transcription Factor ChIP-seq Peaks of CBX8 in A549 from ENCODE 3 (ENCFF330OCU) 0 4 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX8 in A549 from ENCODE 3 (ENCFF330OCU)\ parent encTfChipPk off\ shortLabel A549 CBX8\ subGroups cellType=A549 factor=CBX8\ track encTfChipPkENCFF330OCU\ cloneEndABC13 ABC13 bed 12 Agencourt fosmid library 13 0 4 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 13\ parent cloneEndSuper off\ priority 4\ shortLabel ABC13\ subGroups source=agencourt\ track cloneEndABC13\ type bed 12\ visibility hide\ wgEncodeReg4TxnAdrenalGlandMinus Adrenal gland - bigWig Avg. - strand total RNA-seq level of 8 adrenal gland experiments (tissues and primary cells only) 0 4 90 179 68 172 217 161 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/adrenalGlandMinus.bw\ color 90,179,68\ longLabel Avg. - strand total RNA-seq level of 8 adrenal gland experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 4\ shortLabel Adrenal gland -\ track wgEncodeReg4TxnAdrenalGlandMinus\ type bigWig\ covidHgiGwasR4PvalC2 All COVID vars bigLolly 9 + COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020) 0 4 0 0 0 127 127 127 0 0 22 chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22, phenDis 1 bigDataUrl /gbdb/hg38/covidHgiGwas/covidHgiGwasR4.C2.hg38.bb\ longLabel COVID risk variants from the COVID-19 HGI GWAS Analysis C2 (17965 cases, 33 studies, Rel 4: Oct 2020)\ parent covidHgiGwasR4Pval on\ priority 4\ shortLabel All COVID vars\ track covidHgiGwasR4PvalC2\ dbSnp153 All dbSNP(153) bigDbSnp All Short Genetic Variants from dbSNP Release 153 1 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153.bb\ defaultGeneTracks knownGene\ longLabel All Short Genetic Variants from dbSNP Release 153\ maxWindowToDraw 1000000\ parent dbSnp153ViewVariants off\ priority 4\ shortLabel All dbSNP(153)\ subGroups view=variants\ tableBrowser noGenome\ track dbSnp153\ dbSnp155 All dbSNP(155) bigDbSnp All Short Genetic Variants from dbSNP Release 155 1 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155.bb\ defaultGeneTracks knownGene\ longLabel All Short Genetic Variants from dbSNP Release 155\ maxWindowToDraw 1000000\ parent dbSnp155ViewVariants off\ priority 4\ shortLabel All dbSNP(155)\ subGroups view=variants\ tableBrowser noGenome\ track dbSnp155\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_rev AorticSmsToFgf2_00hr00minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse 0 4 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_rev AorticSmsToFgf2_00hr00minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse 1 4 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep2%20%28LK2%29.CNhs13358.12740-135I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep2 (LK2)_CNhs13358_12740-135I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12740-135I4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToFgf2_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep2LK2_CNhs13358_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12740-135I4\ urlLabel FANTOM5 Details:\ gtexCovArteryAorta Artery Aorta bigWig Artery Aorta 0 4 139 28 98 197 141 176 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-WYVS-0426-SM-4ONDL.Artery_Aorta.RNAseq.bw\ color 139,28,98\ longLabel Artery Aorta\ parent gtexCov\ shortLabel Artery Aorta\ track gtexCovArteryAorta\ phyloP241wayBW Basewise Cons bigWig -20 9.28 PhyloP Basewise Conservation of Zoonomia 241 Placental Mammals 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241way.phyloP.bw\ color 60,60,140\ configurable on\ logoMaf https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241way.bigMaf\ longLabel PhyloP Basewise Conservation of Zoonomia 241 Placental Mammals\ maxHeightPixels 100:50:11\ parent cons241wayViewphyloP\ priority 4\ shortLabel Basewise Cons\ spanList 1\ subGroups view=phyloP clade=all\ track phyloP241wayBW\ type bigWig -20 9.28\ viewLimits -4.5:7.5\ windowingFunction mean\ iscaBenignLossCum Benign Loss bedGraph 4 ClinGen CNVs: Benign Loss Coverage 2 4 200 0 0 227 127 127 0 0 0 phenDis 0 color 200,0,0\ longLabel ClinGen CNVs: Benign Loss Coverage\ parent iscaViewTotal\ shortLabel Benign Loss\ subGroups view=cov class=ben level=sub\ track iscaBenignLossCum\ bismap100Pos Bismap S100 + bigBed 6 Single-read mappability with 100-mers after bisulfite conversion (forward strand) 0 4 240 170 80 247 212 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k100.C2T-Converted.bb\ color 240,170,80\ longLabel Single-read mappability with 100-mers after bisulfite conversion (forward strand)\ parent bismapBigBed off\ priority 4\ shortLabel Bismap S100 +\ subGroups view=SR\ track bismap100Pos\ visibility hide\ wgEncodeReg4DnaseBrain Brain bigWig Avg. DNase level of 225 brain experiments (tissues and primary cells only) 0 4 155 155 18 205 205 136 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpBrainDNase.bw\ color 155,155,18\ longLabel Avg. DNase level of 225 brain experiments (tissues and primary cells only)\ parent wgEncodeReg4Dnase\ priority 4\ shortLabel Brain\ track wgEncodeReg4DnaseBrain\ type bigWig\ lincRNAsCTBrain_R Brain_R bed 5 + lincRNAs from brain_r 1 4 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from brain_r\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Brain_R\ subGroups view=lincRNAsRefseqExp tissueType=brain_r\ track lincRNAsCTBrain_R\ abraom Brazil ABraOM 1k WGS vcfTabix SNV Frequencies: ABraOM Brazil - 1,171 unrelated individuals 0 4 0 0 0 127 127 127 0 0 0
Description
\\ The Arquivo Brasileiro Online de\ Mutações (ABraOM) provides genomic variants obtained with whole-genome sequencing\ from SABE, a census-based sample of elderly individuals from São Paulo, Brazil's largest\ city. The Brazilian population reflects ~500 years of admixture between Africans,\ Europeans, and Native Americans. About 3% of the cohort has non-admixed Japanese ancestry\ (early 20th century migration). Coverage is 38.6x. TEs, HLAs and new sequence are also available.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is abraom.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original data can also be downloaded from the ABraOM website.\
\ \Methods
\\ For academic use only. Licensing for commercial use might be available under request and agreement.\ By using this resource you agree to cite the flagship paper (Naslavsky et al. Nat Comm 2022).\
\\ Whole-genome sequencing was performed at Human Longevity Inc. using TruSeq Nano DNA HT libraries\ sequenced on Illumina HiSeqX instruments with 150 bp paired-end reads targeting 30x coverage, and\ reads were mapped to GRCh38 using ISIS software. Sample sex was validated by comparing CPMs of X\ chromosome and male-specific Y (MSY) reads relative to autosomes, yielding the expected female\ (~55,000 X CPM, <200 MSY CPM) and male (~27,500 X CPM, >550 MSY CPM) patterns. Germline SNVs\ and indels were called following GATK Best Practices (GATK v3.7) via per-sample GVCFs\ (HaplotypeCaller), joint genotyping (CombineGVCFs, GenotypeGVCFs), and Variant Quality Score\ Recalibration (VQSR-AS); multiallelic variants were split with an in-house script, left-aligned with\ BCFtools, and annotated using Annovar and custom scripts against dbSNP, 1000 Genomes, and gnomAD,\ with putative loss-of-function variants identified using LOFTEE v0.3-beta irrespective of confidence\ labels. Variant and genotype quality was further assessed using the in-house CEGH-Filter two-step\ algorithm based on depth and allele balance, and analyses retained only GATK VQSR-AS PASS variants\ and higher-confidence CEGH-Filter calls. Relatedness was assessed using KING and PC-Relate\ (GENESIS), retaining a single proband per related pair and excluding one contaminated sample\ (>3% by verifyBAMID), resulting in a final dataset of 1,171 unrelated individuals. Final samples\ achieved mean coverages ranging from 31.3x to 64.8x, with an average of 38.65x and a median of\ 36.6x.\ The makeDoc file documents how the source files of the varFreqs track were converted.\ For some tracks, python scripts were necessary and are also available from GitHub.\
\ \References
\\
Naslavsky MS, Scliar MO, Yamamoto GL, Wang JYT, Zverinova S, Karp T, Nunes K, Ceroni JRM, de\
Carvalho DL, da Silva Simões CE et al.\
\
Whole-genome sequencing of 1,171 elderly admixed individuals from São Paulo, Brazil.\
Nat Commun. 2022 Mar 4;13(1):1004.\
PMID: 35246524; PMC:
Splice donor: $donor
Splice acceptor: $acceptor
Intron size: $size bp
Strand: $strand\ parent recount3\ priority 4\ shortLabel CCLE\ track recount3_ccle\ wgEncodeReg4MarkCtcfConnectiveTissue Connective tissue bigWig CTCF level of 1 connective tissue experiment (tissues and primary cells only) 0 4 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpConnectiveTissueCTCF.bw\ color 138,135,169\ longLabel CTCF level of 1 connective tissue experiment (tissues and primary cells only)\ parent wgEncodeReg4MarkCtcf off\ priority 4\ shortLabel Connective tissue\ track wgEncodeReg4MarkCtcfConnectiveTissue\ type bigWig\ phyloP100way Cons 100 Verts wig -20 7.532 100 vertebrates Basewise Conservation by PhyloP 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ logoMaf multiz100way\ longLabel 100 vertebrates Basewise Conservation by PhyloP\ maxHeightPixels 100:50:11\ noInherit on\ parent cons100wayViewphyloP on\ priority 4\ shortLabel Cons 100 Verts\ spanList 1\ subGroups view=phyloP\ track phyloP100way\ type wig -20 7.532\ viewLimits -0.5:4\ windowingFunction mean\ phyloPSSREV30way Cons 30 Mam (SSREV) wig -20 1.226 30 mammals Basewise Conservation by PhyloP SSREV model (27 primates) 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ logoMaf multiz30way\ longLabel 30 mammals Basewise Conservation by PhyloP SSREV model (27 primates)\ maxHeightPixels 100:50:11\ noInherit on\ parent cons30wayViewphyloP on\ priority 4\ shortLabel Cons 30 Mam (SSREV)\ spanList 1\ subGroups view=phyloP\ track phyloPSSREV30way\ type wig -20 1.226\ viewLimits -3:1\ windowingFunction mean\ phyloP30way Cons 30 Mammals wig -20 1.312 30 mammals Basewise Conservation by PhyloP (27 primates) 2 4 60 60 140 140 60 60 0 0 0 compGeno 0 altColor 140,60,60\ autoScale off\ color 60,60,140\ configurable on\ logoMaf multiz30way\ longLabel 30 mammals Basewise Conservation by PhyloP (27 primates)\ maxHeightPixels 100:50:11\ noInherit on\ parent cons30wayViewphyloP on\ priority 4\ shortLabel Cons 30 Mammals\ spanList 1\ subGroups view=phyloP\ track phyloP30way\ type wig -20 1.312\ viewLimits -3:1\ windowingFunction mean\ cortexNeuron0TF Cortex - Neuron - Z000000TF bigWig Methylation Atlas: Cortex - Neuron - Z000000TF 2 4 138 43 226 196 149 240 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/cortexNeuron0TF.bw\ color 138,43,226\ longLabel Methylation Atlas: Cortex - Neuron - Z000000TF\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 4\ shortLabel Cortex - Neuron - Z000000TF\ subGroups cellType=Neuron dataType=Replicate\ track cortexNeuron0TF\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ dbVar_common_lee dbVar Curated Lee SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from Lee 3 4 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_lee.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from Lee\ parent dbVar_common off\ priority 4\ shortLabel dbVar Curated Lee SVs\ track dbVar_common_lee\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ ENCFF518SGA_ENCFF827GEQ_ENCFF235TYQ_ENCFF419QIY ENCFF518SGA_ENCFF827GEQ_ENCFF235TYQ_ENCFF419QIY bigBed 9 + 5 Adrenal gland, female adult (53 years): (1) cCREs 4 4 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF518SGA_ENCFF827GEQ_ENCFF235TYQ_ENCFF419QIY.bb\ longLabel Adrenal gland, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 4\ shortLabel ENCFF518SGA_ENCFF827GEQ_ENCFF235TYQ_ENCFF419QIY\ subGroups organ=adrenal_gland view=cCREs_view simpleBiosample=adrenal_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF518SGA_ENCFF827GEQ_ENCFF235TYQ_ENCFF419QIY\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF474UIV ENCSR000AAB - strand bigWig Bladder microvascular endothelial cell male adult (46 years) and male adult (60 years) - strand total RNA-seq signal 2 4 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/a1071409-4ea7-4b65-8f18-3fe21ebb06f1/ENCFF474UIV.bigWig\ color 255,37,41\ longLabel Bladder microvascular endothelial cell male adult (46 years) and male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAB - strand\ track wgEncodeReg4RnaSeq_ENCFF474UIV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF154VDI ENCSR000AHF Signal bigWig MCF-7 TAF1 ENCSR000AHF signal 2 4 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d9a66774-95db-48e9-93ce-3442826a0dac/ENCFF154VDI.bigWig\ color 65,171,173\ longLabel MCF-7 TAF1 ENCSR000AHF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AHF Signal\ track wgEncodeReg4TfChip_ENCFF154VDI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF399KTR ENCSR000AKN Signal bigWig Endothelial cell of umbilical vein male newborn H3K4me3 signal 2 4 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/926e2056-cac1-4cd2-aadf-240aad941196/ENCFF399KTR.bigWig\ color 255,0,0\ longLabel Endothelial cell of umbilical vein male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AKN Signal\ track wgEncodeReg4Epigenetics_ENCFF399KTR\ type bigWig\ visibility full\ unipLocExtra Extracellular bigBed 12 + UniProt Extracellular Domain 1 4 0 150 255 127 202 255 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipLocExtra.bb\ color 0,150,255\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Extracellular Domain\ mouseOver UniProt record: $uniProtId
Position: $position
UniProt status: $status
\ parent uniprot\ priority 4\ shortLabel Extracellular\ track unipLocExtra\ type bigBed 12 +\ visibility dense\ knownGeneV44 GENCODE V44 bigGenePred knownGenePep knownGeneMrna GENCODE V44 0 4 0 0 0 127 127 127 0 0 0
Description
\\ The GENCODE Genes track (version 44, July 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The following table provides statistics for the v44 release derived from the GTF file that contains\ annotations only on the main chromosomes. More information on how they were generated can be found\ in the GENCODE site.
\ \\
\ \\
\ GENCODE v44 Release Stats \ Genes Observed Transcripts Observed \ Protein-coding genes 19,396 Protein-coding transcripts 89,067 \ Long non-coding RNA genes 19,922 - full length protein-coding 63,968 \ Small non-coding RNA genes 7,566 - partial length protein-coding 25,099 \ Pseudogenes 14,735 Nonsense mediated decay transcripts 21,384 \ Immunoglobulin/T-cell receptor gene segments 647 Long non-coding RNA loci transcripts 58,246 \ Total No of distinct translations 65,342 Genes that have more than one distinct translations 13,594
\
\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding: protein coding transcripts, including polymorphic\ pseudogenes\
- non-coding: non-protein coding transcripts\
- pseudogene: pseudogene transcript annotations\
- problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain) \
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \ \Squishy-pack Display
\\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:
\ Protein_coding genes\- \
- MANE or Ensembl canonical\
- \
- 1st: MANE Select / Ensembl canonical \
- 2nd: MANE Plus Clinical \
\
- Coding biotypes\
- \
- 1st: protein_coding and protein_coding_LoF \
- 2nd: NMDs and NSDs \
- 3rd: retained intron and protein_coding_CDS_not_defined \
\
- Completeness\
- \
- 1st: full length \
- 2nd: CDS start/end not found \
\
- CARS score (only for coding transcripts) \
- Transcript genomic span and length (only for non-coding transcripts) \
- \
- Transcript biotype\
- \
- 1st: transcript biotype identical to gene biotype \
\
- Ensembl canonical \
- GENCODE basic \
- Transcript genomic span \
- Transcript length \
Methods
\\
The GENCODE v44 track was built from the GENCODE downloads file \
gencode.v44.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources\
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney. This version of the track was\ generated by Jonathan Casper.
\ \References
\ \\
Frankish A, Carbonell-Sala S, Diekhans M, Jungreis I, Loveland JE, Mudge JM, Sisu C, Wright JC,\
Arnan C, Barnes I et al.\
\
GENCODE: reference annotation for the human and mouse genomes in 2023.\
Nucleic Acids Res. 2023 Jan 6;51(D1):D942-D949.\
PMID: 36420896; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV44.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV44\ group genes\ html knownGeneV44\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V44\ maxItems 50000\ parent knownGeneArchive\ priority 4\ searchIndex name\ shortLabel GENCODE V44\ squishyPackField rank\ squishyPackLabel Number of transcripts shown at full height (ranked by GENCODE transcript ranking)\ squishyPackPoint 1\ track knownGeneV44\ type bigGenePred knownGenePep knownGeneMrna\ visibility hide\ geneHancerClusteredInteractionsDoubleElite GH Clusters (DE) bigInteract Clustered interactions of GeneHancer regulatory elements and genes (Double Elite) 3 4 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$Description
\\ The gnomAD v2 tracks show variants from 125,748 exomes and 15,708 whole genomes, all mapped to\ the GRCh37/hg19 reference sequence and lifted to the GRCh38/hg38 assembly. The data originate\ from 141,456 unrelated individuals sequenced as part of various population-genetic and\ disease-specific studies\ collected by the Genome Aggregation Database (gnomAD), release 2.1.1.\ Raw data from all studies have been reprocessed through a unified pipeline and jointly\ variant-called to increase consistency across projects. For more information on the processing\ pipeline and population annotations, see the following blog post\ and the 2.1.1 README.
\\ gnomAD v2 data are based on the GRCh37/hg19 assembly. These tracks display the\ GRCh38/hg38 lift-over provided by gnomAD on their downloads site.\
\ \The gnomAD MPC score (Missense Deleteriousness Prediction by Constraint) is available for now only on hg19.
\ \\ For questions on the gnomAD data, also see the gnomAD FAQ.
\ \Display Conventions and Configuration
\\ The gnomAD v2.1.1 track follows the standard display and configuration options available for\ VCF tracks, briefly explained below.\
\- \
- In mode, a vertical line is drawn at the position of\ each variant. \
- In mode, "ref" and "alt" alleles are\ displayed to the left of a vertical line with colored portions corresponding to allele counts.\ Hovering the mouse pointer over a variant pops up a display of alleles and counts. \
Filtering Options
\\ Four filters are available for these tracks, the same as the underlying VCF:\
- \
- AC0: Allele Count 0 after filtering out low confidence genotypes (GQ < 20; DP < 10; and AB < 0.2 for het calls))\
- InbreedingCoeff: Inbreeding Coefficient < -0.3\
- RF: Used to exclude/include variants that failed Random Forest filtering thresholds of 0.055272738028512555, 0.20641025579497013 (probabilities of being a true positive variant) for SNPs, indels)\
- Pass: Variant passes all 3 filters\
\ There are two additional filters available, one for the minimum minor allele frequency, and a configurable filter on the QUAL score.\
\ \Data Access
\\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\ varRep 1 compositeTrack on\ configureByPopup off\ dataVersion Release 2.1.1 (March 6, 2019)\ html gnomadV2.html\ longLabel Genome Aggregation Database (gnomAD) Genome and Exome Variants v2.1\ maxWindowToDraw 200000\ parent gnomadVariants\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 4\ shortLabel gnomAD v2\ showHardyWeinberg on\ track gnomadVariantsV2\ type vcfTabix\ visibility hide\ gnomad4ExomeCoverage gnomAD v4 Exome Coverage bigWig Genome Aggregation Database (gnomAD) Exome Sample Coverage v4.0 2 4 0 0 0 127 127 127 0 0 0Description
\\ The Genome Aggregation Database (gnomAD) v4 - Exome Coverage track shows how many\ times regions of the genomes were sequenced. This track includes several subtracks of average\ coverage metrics and sample percentage of coverage.\
\\ There is no gnomAD v4 genome coverage track because the genomes were unchanged from V3. There is no\ gnomAD v3 exomes track because v3 was a genome-only release.
\ \Display Conventions
\\ The Average/Median Sample Coverage tracks display the mean and median read depth of the\ samples at each base position. The details page shows calculated sample percentages for the range\ of sequence within the browser window.\
\ \\ The nX Coverage Percentage tracks display the percentage of samples whose read\ depth is at least 1X, 5X, 10X, 15X, 20X, 25X, 30X, 50X, and 100X at each base position. The details\ page shows calculated sample percentages for the range of sequence within the browser window.\
\ \Methods
\\ Coverage was computed using all gnomAD 4 exome samples from their gVCFs. The gVCFs were produced\ using a 3-bin blocking scheme:\
\- \
- No coverage \
- Reference genotype quality < Q20 \
- Reference genotype quality ≥ Q20 \
\ The coverage was binned by quality using the thresholds above and the median coverage value for each\ of the resulting coverage blocks was used to compute the coverage metrics presented in the browser.\ Coverage was computed for all callable bases in the genome (all non-N bases, minus telomeres and\ centromeres).\
\ \Data Access
\ \\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \
can be downloaded from our
\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
References
\ \\
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\
AJ, Cummings BB et al.\
\
Analysis of protein-coding genetic variation in 60,706 humans.\
Nature. 2016 Aug 18;536(7616):285-91.\
PMID: 27535533; PMC:
\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\
Ganna A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\
Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\
Gauthier LD, Wang H et al.\
\
A structural variation reference for medical and population genetics.\
Nature. 2020 May;581(7809):444-451.\
PMID: 32461652; PMC:
\
Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\
Satterstrom FK, O'Donnell-Luria AH et al.\
\
Transcript expression-aware annotation improves rare variant interpretation.\
Nature. 2020 May;581(7809):452-458.\
PMID: 32461655; PMC:
Description
\Agilent Arrays
\\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\
\Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\
\ \\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\
\ \Illumina 450k and 850k Methylation Arrays
\\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks, not the probe locations themselves. Contact us\ or Illumina if you need the probe locations directly. More information about\ the arrays can be found on the\ Infinium MethylationEPIC Kit website.\
\ Note: The 450k track on hg38 contains 128,989 regions representing the target regions, not the probes\ themselves.
\ \Illumina CytoSNP 850K Probe Array
\\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \
\ \Affymetrix Cytoscan HD GeneChip Array
\\ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\
\ \Bionano DLE-1 CTTAAG sites
\ \\ Bionano Laboratories provides access to Optical Genome Mapping (OGM) data for projects across a variety of\ applications for researchers, clinicians, and pharmaceutical companies.
\This track shows the CTTAAG sites used by the \ Bionano Optical Genome Mapping system,\ an assay to detect structural variants.\
\ \Display Conventions and Configuration
\ \\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \ \Methods
\\ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.
\\ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.
\\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\
\\ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\
\\ The Bionano track was created by receiving the BED files from\ \ apang@bionano.\ com\ \ and converted to bigBed files using the bedToBigBed tool.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the Agilent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.
\\ Thanks to Andy Pang from Bionano Genomics for providing the BED data file.
\ varRep 1 bigDataUrl /gbdb/hg38/bbi/illumina/illumina450K.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina 450k Methylation Array\ noScoreFilter on\ parent genotypeArrays on\ priority 4\ shortLabel Illumina 450k\ track snpArrayIllumina450k\ type bigBed 6\ urls refGeneAccession="https://www.ncbi.nlm.nih.gov/nuccore/$$" rsID="https://www.ncbi.nlm.nih.gov/snp/?term=$$"\ visibility pack\ unipInterest Interest bigBed 12 + UniProt Regions of Interest 1 4 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipInterest.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ itemRgb off\ longLabel UniProt Regions of Interest\ mouseOver UniProt record: $uniProtIdPosition: $position
UniProt status: $status
\ parent uniprot\ priority 4\ shortLabel Interest\ track unipInterest\ type bigBed 12 +\ visibility dense\ jaspar2018 JASPAR 2018 TFBS bigBed 6 + JASPAR CORE 2018 - Predicted Transcription Factor Binding Sites 3 4 0 0 0 127 127 127 1 0 0 http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all regulation 1 bigDataUrl /gbdb/hg38/jaspar/JASPAR2018.bb\ filterValues.name Ahr::Arnt,Alx1,ALX3,Alx4,Ar,Arid3a,Arid3b,Arid5a,Arnt,ARNT::HIF1A,Arntl,Arx,ASCL1,Ascl2,Atf1,Atf3,ATF4,ATF7,Atoh1,Bach1::Mafk,BACH2,Barhl1,BARHL2,BARX1,BATF3,BATF::JUN,Bcl6,BCL6B,Bhlha15,BHLHE22,BHLHE23,BHLHE40,BHLHE41,BSX,CDX1,CDX2,CEBPA,CEBPB,CEBPD,CEBPE,CEBPG,CENPB,CLOCK,CREB1,CREB3,CREB3L1,Creb3l2,Creb5,Crem,Crx,CTCF,CTCFL,CUX1,CUX2,DBP,Ddit3::Cebpa,Dlx1,Dlx2,Dlx3,Dlx4,DLX6,Dmbx1,DMRT3,Dux,DUX4,DUXA,E2F1,E2F2,E2F3,E2F4,E2F6,E2F7,E2F8,EBF1,EGR1,EGR2,EGR3,EGR4,EHF,ELF1,ELF3,ELF4,ELF5,ELK1,ELK3,ELK4,EMX1,EMX2,EN1,EN2,EOMES,ERF,ERG,ESR1,ESR2,Esrra,ESRRB,Esrrg,ESX1,ETS1,ETV1,ETV2,ETV3,ETV4,ETV5,ETV6,EVX1,EVX2,EWSR1-FLI1,FEV,FIGLA,FLI1,FOS,FOSB::JUN,FOSB::JUNB,FOSB::JUNB(var.2),FOS::JUN,FOS::JUNB,FOS::JUND,FOS::JUN(var.2),FOSL1,FOSL1::JUN,FOSL1::JUNB,FOSL1::JUND,FOSL1::JUND(var.2),FOSL1::JUN(var.2),FOSL2,FOSL2::JUN,FOSL2::JUNB,FOSL2::JUNB(var.2),FOSL2::JUND,FOSL2::JUND(var.2),FOSL2::JUN(var.2),FOXA1,Foxa2,FOXB1,FOXC1,FOXC2,FOXD1,FOXD2,Foxd3,FOXF2,FOXG1,FOXH1,FOXI1,Foxj2,Foxj3,FOXK1,FOXK2,FOXL1,Foxo1,FOXO3,FOXO4,FOXO6,FOXP1,FOXP2,FOXP3,Foxq1,Gabpa,Gata1,GATA1::TAL1,GATA2,GATA3,Gata4,GATA5,GATA6,GBX1,GBX2,GCM1,GCM2,Gfi1,Gfi1b,GLI2,GLIS1,GLIS2,GLIS3,Gmeb1,GMEB2,GRHL1,GRHL2,GSC,GSC2,GSX1,GSX2,Hand1::Tcf3,Hes1,Hes2,HES5,HES7,HESX1,HEY1,HEY2,Hic1,HIC2,HIF1A,HINFP,HLF,HLTF,HMBOX1,Hmx1,Hmx2,Hmx3,HNF1A,HNF1B,Hnf4a,HNF4G,HOXA10,Hoxa11,HOXA13,HOXA2,HOXA5,Hoxa9,HOXB13,HOXB2,HOXB3,Hoxb5,HOXC10,HOXC11,HOXC12,HOXC13,Hoxc9,HOXD11,HOXD12,HOXD13,Hoxd3,Hoxd8,Hoxd9,HSF1,HSF2,HSF4,Id2,ID4,INSM1,IRF1,IRF2,IRF3,IRF4,IRF5,IRF7,IRF8,IRF9,ISL2,ISX,JDP2,JDP2(var.2),JUN,JUNB,JUNB(var.2),JUND,JUND(var.2),JUN::JUNB,JUN::JUNB(var.2),JUN(var.2),Klf1,Klf12,KLF13,KLF14,KLF16,KLF4,KLF5,KLF9,LBX1,LBX2,LEF1,LHX2,Lhx3,Lhx4,LHX6,Lhx8,LHX9,LIN54,LMX1A,LMX1B,Mafb,MAFF,MAFG,MAFG::NFE2L1,MAFK,MAF::NFE2,MAX,MAX::MYC,Mecom,MEF2A,MEF2B,MEF2C,MEF2D,MEIS1,MEIS2,MEIS3,MEOX1,MEOX2,MGA,MITF,mix-a,MIXL1,MLX,Mlxip,MLXIPL,MNT,MNX1,MSC,MSX1,MSX2,Msx3,MTF1,MXI1,MYB,MYBL1,MYBL2,MYC,MYCN,MYF6,Myod1,Myog,MZF1,MZF1(var.2),NEUROD1,NEUROD2,Neurog1,NEUROG2,NFAT5,NFATC1,NFATC2,NFATC3,NFE2,Nfe2l2,NFIA,NFIC,NFIC::TLX1,NFIL3,NFIX,NFKB1,NFKB2,NFYA,NFYB,NHLH1,NKX2-3,Nkx2-5,Nkx2-5(var.2),NKX2-8,Nkx3-1,NKX3-2,NKX6-1,NKX6-2,Nobox,NOTO,Npas2,NR1A4::RXRA,NR1H2::RXRA,Nr1h3::Rxra,NR1H4,NR2C2,Nr2e1,Nr2e3,NR2F1,NR2F2,Nr2f6,Nr2f6(var.2),NR3C1,NR3C2,NR4A1,NR4A2,NR4A2::RXRA,Nr5a2,NRF1,NRL,OLIG1,OLIG2,OLIG3,ONECUT1,ONECUT2,ONECUT3,OTX1,OTX2,PAX1,Pax2,PAX3,PAX4,PAX5,Pax6,PAX7,PAX9,PBX1,PBX2,PBX3,PDX1,PHOX2A,Phox2b,Pitx1,PITX3,PKNOX1,PKNOX2,PLAG1,POU1F1,POU2F1,POU2F2,Pou2f3,POU3F1,POU3F2,POU3F3,POU3F4,POU4F1,POU4F2,POU4F3,POU5F1,POU5F1B,Pou5f1::Sox2,POU6F1,POU6F2,PPARA::RXRA,PPARG,Pparg::Rxra,PRDM1,PROP1,PROX1,PRRX1,Prrx2,RARA,RARA::RXRA,RARA::RXRG,RARA(var.2),Rarb,Rarb(var.2),Rarg,Rarg(var.2),RAX,RAX2,RBPJ,REL,RELA,RELB,REST,Rfx1,RFX2,RFX3,RFX4,RFX5,Rhox11,RHOXF1,RORA,RORA(var.2),RORB,RORC,RREB1,RUNX1,RUNX2,RUNX3,Rxra,RXRA::VDR,RXRB,RXRG,SCRT1,SCRT2,SHOX,Shox2,SIX1,SIX2,Six3,SMAD2::SMAD3::SMAD4,SMAD3,Smad4,SNAI2,Sox1,SOX10,Sox11,SOX13,SOX15,Sox17,Sox2,SOX21,Sox3,SOX4,Sox5,Sox6,SOX8,SOX9,SP1,SP2,SP3,SP4,SP8,SPDEF,SPI1,SPIB,SPIC,Spz1,SREBF1,Srebf1(var.2),SREBF2,SREBF2(var.2),SRF,SRY,STAT1,STAT1::STAT2,STAT3,Stat4,Stat5a::Stat5b,Stat6,T,TAL1::TCF3,TBP,TBR1,TBX1,TBX15,TBX19,TBX2,TBX20,TBX21,TBX4,TBX5,Tcf12,Tcf21,TCF3,TCF4,Tcf7,TCF7L1,TCF7L2,Tcfl5,TEAD1,TEAD2,TEAD3,TEAD4,TEF,TFAP2A,TFAP2A(var.2),TFAP2A(var.3),TFAP2B,TFAP2B(var.2),TFAP2B(var.3),TFAP2C,TFAP2C(var.2),TFAP2C(var.3),TFAP4,TFCP2,TFDP1,TFE3,TFEB,TFEC,TGIF1,TGIF2,THAP1,TP53,TP63,TP73,TWIST1,Twist2,UNCX,USF1,USF2,VAX1,VAX2,VDR,VENTX,VSX1,VSX2,XBP1,YY1,YY2,ZBED1,ZBTB18,ZBTB33,ZBTB7A,ZBTB7B,ZBTB7C,ZEB1,Zfx,ZIC1,ZIC3,ZIC4,ZNF143,ZNF24,ZNF263,ZNF282,ZNF354C,ZNF384,ZNF410,Znf423,ZNF740,ZSCAN4\ longLabel JASPAR CORE 2018 - Predicted Transcription Factor Binding Sites\ parent jaspar off\ priority 4\ shortLabel JASPAR 2018 TFBS\ track jaspar2018\ type bigBed 6 +\ visibility pack\ wgEncodeReg4AtacLargeIntestine Large intestine bigWig Avg. ATAC level of 12 large intestine experiments (tissues and primary cells only) 0 4 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLargeIntestineATAC.bw\ color 86,86,36\ longLabel Avg. ATAC level of 12 large intestine experiments (tissues and primary cells only)\ parent wgEncodeReg4Atac off\ priority 4\ shortLabel Large intestine\ track wgEncodeReg4AtacLargeIntestine\ type bigWig\ caddT Mutation: T bigWig CADD 1.6 Score: Mutation is T 1 4 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd/t.bw\ longLabel CADD 1.6 Score: Mutation is T\ maxHeightPixels 128:20:8\ parent cadd on\ shortLabel Mutation: T\ track caddT\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ promoterAiT Mutation: T bigWig PromoterAI: Mutation is T 1 4 200 0 0 0 0 200 0 0 0 phenDis 0 altColor 0,0,200\ alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/_promoterAi/t.bw\ color 200,0,0\ longLabel PromoterAI: Mutation is T\ maxHeightPixels 128:40:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent promoterAi on\ shortLabel Mutation: T\ track promoterAiT\ type bigWig\ viewLimits -1:1\ viewLimitsMax -1:1\ visibility dense\ cadd1_7_T Mutation: T bigWig CADD 1.7 Score: Mutation is T 1 4 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/cadd1.7/t.bw\ longLabel CADD 1.7 Score: Mutation is T\ maxHeightPixels 128:20:8\ parent cadd1_7 on\ setColorWith /gbdb/hg38/cadd1.7/t.color.bb\ shortLabel Mutation: T\ track cadd1_7_T\ type bigWig\ viewLimits 10:50\ viewLimitsMax 0:100\ visibility dense\ revelT Mutation: T bigWig REVEL: Mutation is T 1 4 150 80 200 202 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/revel/t.bw\ longLabel REVEL: Mutation is T\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent revel on\ setColorWith /gbdb/hg38/revel/t.color.bb\ shortLabel Mutation: T\ track revelT\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility dense\ alphaMissense_T Mutation: T bigWig AlphaMissense Score: Mutation is T 1 4 100 130 160 177 192 207 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/alphaMissense/t.bw\ longLabel AlphaMissense Score: Mutation is T\ maxHeightPixels 128:20:8\ parent alphaMissense on\ setColorWith /gbdb/hg38/alphaMissense/t.color.bb\ shortLabel Mutation: T\ track alphaMissense_T\ type bigWig\ viewLimits 0:1\ visibility dense\ mutScoreT Mutation: T bigWig MutScore: Mutation is T 2 4 50 80 200 152 167 227 0 0 0 phenDis 0 bigDataUrl /gbdb/hg38/mutscore/mutscoreT.bw\ longLabel MutScore: Mutation is T\ maxHeightPixels 128:20:8\ maxWindowToDraw 10000000\ maxWindowToQuery 500000\ mouseOverFunction noAverage\ parent mutScore on\ shortLabel Mutation: T\ track mutScoreT\ type bigWig\ viewLimits 0:1.0\ viewLimitsMax 0:1.0\ visibility full\ nmdDetectiveA_ptc NMDetective-A PTC bigWig NMDetective-A: Random forest NMD efficiency for first out-of-frame PTC 0 4 0 153 102 127 204 178 0 0 0
Description
\\ The NMDetective tracks display genome-wide predictions of nonsense-mediated mRNA\ decay (NMD) efficiency from\ Lindeboom et al. 2016.\ NMDetective scores predict whether a premature termination codon (PTC) at a given position\ will trigger NMD and mRNA degradation, or whether the transcript will escape NMD and\ potentially produce a truncated protein.\
\ \\ Scores range from approximately −1 to +1. Positive values indicate that a PTC at\ that position is predicted to trigger NMD (the mRNA is degraded). Negative values indicate\ that the PTC is predicted to escape NMD (the truncated mRNA may be translated into an\ aberrant protein). Values near zero indicate intermediate or uncertain NMD efficiency.\
\ \Subtracks
\| Track | Description |
|---|---|
| NMDetective-A | \Random forest model predicting NMD efficiency for all possible PTCs introduced\ by single-nucleotide variants. Explains ~71% of systematic variance in NMD\ efficiency. |
| NMDetective-B | \Simplified decision tree model for all possible PTCs. Slightly lower accuracy\ (~68% variance explained) but more interpretable, making it suitable for\ clinical applications. |
| NMDetective-A PTC | \Random forest model predicting NMD efficiency specifically for the first\ out-of-frame PTC introduced by frameshifting indel mutations. |
| NMDetective-B PTC | \Decision tree model for the first out-of-frame PTC from frameshifting\ indels. |
Display Conventions and Configuration
\\ Each subtrack is displayed as a signal (bigWig) track. By default, the vertical axis\ ranges from −1 to +1. Regions with positive values (predicted NMD-triggering) are\ shown above the baseline; regions with negative values (predicted NMD escape) are shown\ below.\
\- \
- Blue tracks (NMDetective-A and -B): predictions\ for all possible PTCs from single-nucleotide nonsense variants. \
- Green tracks (NMDetective-A PTC and -B PTC):\ predictions for the first out-of-frame PTC from frameshifting indels. \
Methods
\\ The NMDetective models were trained on somatic nonsense mutation data from 9,769 cancer\ patients and validated with frameshift mutations and germline variants\ (Lindeboom et al. 2019).\ The models incorporate the following features to predict NMD efficiency:\
\- \
- Whether the PTC falls in the last exon \
- Distance to the last 50 nt of the penultimate exon (the EJC-based “50 bp rule”) \
- Distance from the coding start (start-proximal NMD insensitivity) \
- Exon length \
- mRNA half-life \
- Distance to the downstream exon-junction complex \
- Distance to the wild-type stop codon \
\ NMDetective-A (random forest regression) captures non-linear interactions among\ these features and achieves the highest predictive accuracy.\ NMDetective-B (decision tree) applies a simpler rule-based classification that\ is more transparent, with a modest reduction in accuracy.\
\ \\ The predictions were generated for every possible PTC-introducing single-nucleotide\ variant and for the first out-of-frame PTC from every possible single-nucleotide\ frameshifting indel across all human protein-coding transcripts. The original bedGraph\ custom track files were downloaded from the\ NMDetective Figshare page\ resource and converted to bigWig format at UCSC.\
\ \Data Access
\\ The data underlying these tracks can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Rik Lindeboom for providing custom tracks and the original NMDetective data\ on Figshare.\
\ \References
\ \\
Lindeboom RG, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\
Lindeboom RGH, Vermeulen M, Lehner B, Supek F.\
\
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer\
immunotherapy.\
Nat Genet. 2019 Nov;51(11):1645-1651.\
PMID: 31659324; PMC:
Panel: $panelName
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel\ parent panelApp on\ priority 4\ shortLabel PanelApp Australia Genes\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,entityName,tags,status,mouseOverField\ track panelAppAusGenes\ type bigBed 9 +\ url https://panelapp-aus.org/panels/$
Description
\\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\
\ \This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\
\ \Display Conventions and Configuration
\\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\
\ \\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\
\ \Methods
\\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\
\ \The 1000 Genomes genetic map is based on the
As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\
\ \References
\\
1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\
Hurles ME, McVean GA.\
\
A map of human genome variation from population-scale sequencing.\
Nature. 2010 Oct 28;467(7319):1061-73.\
PMID: 20981092; PMC:
\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\
\ map 1 bigDataUrl /gbdb/hg38/recombRate/events.bb\ html recombRate2.html\ longLabel Recombination events in deCODE Genetic Map (zoom to < 10kbp to see the events)\ parent recombRate2\ priority 4\ shortLabel Recomb. deCODE Evts\ track recombEvents\ type bigBed 4 +\ visibility hide\ ncbiRefSeqOther RefSeq Other bigBed 12 + NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*) 1 4 32 32 32 143 143 143 0 0 0 genes 1 bigDataUrl /gbdb/hg38/ncbiRefSeq/ncbiRefSeqOther.bb\ color 32,32,32\ labelFields gene\ longLabel NCBI RefSeq Other Annotations (not NM_*, NR_*, XM_*, XR_*, NP_* or YP_*)\ parent refSeqComposite off\ priority 4\ searchIndex name\ searchTrix /gbdb/hg38/ncbiRefSeq/ncbiRefSeqOther.ix\ shortLabel RefSeq Other\ skipEmptyFields on\ track ncbiRefSeqOther\ type bigBed 12 +\ urls GeneID="https://www.ncbi.nlm.nih.gov/gene/$$" MIM="https://www.ncbi.nlm.nih.gov/omim/612091" HGNC="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" FlyBase="https://flybase.org/reports/$$" WormBase="http://www.wormbase.org/db/gene/gene?name=$$" RGD="https://rgd.mcw.edu/rgdweb/search/search.html?term=$$" SGD="https://www.yeastgenome.org/locus/$$" miRBase="http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=$$" ZFIN="https://zfin.org/$$" MGI="https://www.informatics.jax.org//marker/$$"\ joinedRmsk RepeatMasker Viz. bed 3 + Detailed Visualization of RepeatMasker Annotations 0 4 0 0 0 127 127 127 1 0 0Description
\ \\ This track was created using Arian Smit's\ RepeatMasker\ program, which screens DNA sequences\ for interspersed repeats and low complexity DNA sequences. The program\ outputs a detailed annotation of the repeats that are present in the\ query sequence (represented by this track), as well as a modified version\ of the query sequence in which all the annotated repeats have been masked\ (generally available on the\ Downloads page). RepeatMasker uses a separately curated version of the \ Repbase Update repeat library from the\ Genetic \ Information Research Institute (GIRI).\ Repbase Update is described in Jurka (2000) in the References section below.
\\ Alternatively, RepeatMasker can use the new\ Dfam database of repeat profile HMMs.\ Profile HMMs provide a richer description of the repeat families and when used with\ RepeatMasker + nhmmer provide a more\ sensitive approach to identifying repeats. Dfam is described in Wheeler et al. (2012)\ in the References section below.\
\ \Display Conventions and Configuration
\ \\ In dense display mode, a single line is displayed denoting the coverage of repeats using a series\ of black boxes. \
\\ In full display mode, the track view is controlled by the scale of the view. At scales between 10 Mb\ and 30 kb, this track displays up to ten different classes of repeats (see below) one class per\ line. The repeat ranges are denoted as grayscale boxes, reflecting both the size of the repeat and\ the amount of base mismatch, base deletion, and base insertion associated with a repeat element.\ The higher the combined number of these, the lighter the shading.\
\\ In full display mode and at scales less than 30 kb, a new detailed display mode is used. Repeats\ are displayed as arrow boxes, indicating the size and orientation of the repeat. The interior\ grayscale shading represents the divergence of the repeat (see above) while the outline color\ represents the class of the repeat. Dotted lines above the repeat and extending left or right\ indicate the length of unaligned repeat consensus sequence. If the length of the unaligned sequence\ is large, a double interruption line is used to indicate that the unaligned sequence is not to scale. \
\\ For example, the following repeat is a SINE element in the forward orientation with average\ divergence. Only the 5' proximal fragment of the consensus sequence is aligned to the genome.\ The 3' unaligned length (384bp) is not drawn to scale and is instead displayed using a set of\ interruption lines along with the length of the unaligned sequence.\
\ \ \ \\ Repeats that have been fragmented by insertions or large internal deletions are now represented\ by join lines. In the example below, a LINE element is found as two fragments. The solid\ connection lines indicate that there are no unaligned consensus bases between the two fragments.\ Also note these fragments represent the end of the repeat, as there is no unaligned consensus\ sequence following the last fragment.\
\ \ \ \\ In cases where there is unaligned consensus sequence between the fragments, the repeat will look like\ the following. The dotted line indicates the length of the unaligned sequence between the two\ fragments. In this case the unaligned consensus is longer than the actual genomic distance between\ these two fragments.\
\ \ \ \\ If there is consensus overlap between the two fragments, the joining lines will be drawn to indicate\ how much of the left fragment is repeated in the right fragment. \
\ \ \ \\ The following table lists the repeat class colors:\
\ \| Color | \Repeat Class | \
|---|---|
| \ | SINE - Short Interspersed Nuclear Element | \
| \ | LINE - Long Interspersed Nuclear Element | \
| \ | LTR - Long Terminal Repeat | \
| \ | DNA - DNA Transposon | \
| \ | Simple - Single Nucleotide Stretches and Tandem Repeats | \
| \ | Low_complexity - Low Complexity DNA | \
| \ | Satellite - Satellite Repeats | \
| \ | RNA - RNA Repeats (including RNA, tRNA, rRNA, snRNA, scRNA, srpRNA) | \
| \ | Other - Other Repeats (including class RC - Rolling Circle) | \
| \ | Unknown - Unknown Classification | \
\ A "?" at the end of the "Family" or "Class" (for example, DNA?)\ signifies that the curator was unsure of the classification. At some point in the future,\ either the "?" will be removed or the classification will be changed.
\ \Methods
\ \\ UCSC has used the most current versions of the RepeatMasker software\ and repeat libraries available to generate these data. Note that these\ versions may be newer than those that are publicly available on the Internet.\
\\ Data are generated using the RepeatMasker -s flag. Additional flags\ may be used for certain organisms. Repeats are soft-masked. Alignments may\ extend through repeats, but are not permitted to initiate in them.\ See the FAQ for more information.\
\ \Credits
\ \\ Thanks to Arian Smit, Robert Hubley and GIRI for providing the tools and\ repeat libraries used to generate this track.\
\ \References
\ \\ Smit AFA, Hubley R, Green P. RepeatMasker Open-3.0.\ \ https://www.repeatmasker.org/. 1996-2010.\
\ \\ Dfam is described in:\
\\
Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD.\
\
Dfam: a database of repetitive DNA based on profile hidden Markov models.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D70-82.\
PMID: 23203985; PMC:
\ Repbase Update is described in:\
\\ Jurka J.\ \ Repbase Update: a database and an electronic journal of repetitive elements.\ Trends Genet. 2000 Sep;16(9):418-420.\ PMID: 10973072\
\ \\ For a discussion of repeats in mammalian genomes, see:\
\\ Smit AF.\ \ Interspersed repeats and other mementos of transposable elements in mammalian genomes.\ Curr Opin Genet Dev. 1999 Dec;9(6):657-63.\ PMID: 10607616\
\ \\ Smit AF.\ \ The origin of interspersed repeats in the human genome.\ Curr Opin Genet Dev. 1996 Dec;6(6):743-8.\ PMID: 8994846\
\ rep 0 allButtonPair on\ canPack off\ compositeTrack on\ group rep\ html joinedRmsk\ longLabel Detailed Visualization of RepeatMasker Annotations\ maxWindowToDraw 10000000\ priority 4\ shortLabel RepeatMasker Viz.\ spectrum on\ track joinedRmsk\ type bed 3 +\ visibility hide\ rmskJoinedBaseline RepeatMasker Viz. bed 3 + RepeatMasker v3.0.1 db20100302 : Browser Baseline Dataset 0 4 0 0 0 127 127 127 1 0 0 rep 0 group rep\ longLabel RepeatMasker v3.0.1 db20100302 : Browser Baseline Dataset\ parent joinedRmsk on\ priority 4\ shortLabel RepeatMasker Viz.\ track rmskJoinedBaseline\ visibility hide\ gnomad315XPercentage Sample % > 15X bigWig gnomAD Percentage of Genome Samples with at least 15X Coverage v3.0.1 2 4 165 0 90 210 127 172 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_15.bw\ color 165,0,90\ longLabel gnomAD Percentage of Genome Samples with at least 15X Coverage v3.0.1\ parent gnomad3Coverage off\ priority 4\ shortLabel Sample % > 15X\ track gnomad315XPercentage\ viewLimits 0:1\ gnomad4Exome15XPercentage Sample % > 15X bigWig gnomAD Percentage of Exome Samples with at least 15X Coverage v4.0 2 4 165 0 90 210 127 172 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_15.bw\ color 165,0,90\ longLabel gnomAD Percentage of Exome Samples with at least 15X Coverage v4.0\ parent gnomad4ExomeCoverage off\ priority 4\ shortLabel Sample % > 15X\ track gnomad4Exome15XPercentage\ viewLimits 0:1\ shorthcondels Short hConDels bigBed 4 + short hConDels: 10032 Short Human hCondels - Human Conserved Deletions < 40bp 0 4 0 0 0 127 127 127 0 0 0 compGeno 1 bigDataUrl /gbdb/hg38/unusualcons/hcondels.bb\ longLabel short hConDels: 10032 Short Human hCondels - Human Conserved Deletions < 40bp\ parent unusualcons on\ shortLabel Short hConDels\ track shorthcondels\ type bigBed 4 +\ sgdp Simons Genome Diversity Project 0.3k WGS vcfTabix Phased Variants: Simons Genome Diversity Project - 279 samples, unmixed populations 3 4 0 0 0 127 127 127 0 0 0Description
\\ This tracks contains variants of individual genotypes, usually phased, from the projects\ Human Diversity Genome Project, Simons Genome Diversity Project, gnomad's HGDP+1000 Genomes callset,\ and the Mexico Biobank.\ The original release of 1000 Genomes has its own, separate track.\ Projects where the released variants are not phased can be found in the container track "SNV Frequencies".\
\ \\ Available on hg19 and hg38:
\- \
- \ Mexico Biobank (MXB):\ This track displays phased alleles from the Mexico Biobank Project (MXB), based on array\ genotyping of 6,011 individuals sampled across all 32 states of Mexico during the 2000\ National Health Survey (ENSA 2000) conducted by the National Institute of Public Health\ (INSP). Frequencies can be plotted onto a map on\ MexVar.\ The hg38 track was lifted from hg19.\ \ \
- \ Simons Genome Diversity Project (SGDP):\ Funded by the Simons Foundation, the Simons Genome Diversity Project\ is a large-scale effort that sequenced high-coverage genomes from 300\ individuals (279 in this track) representing 142 diverse and often\ indigenous populations worldwide.\ Its goal was to capture the full range of human genetic\ diversity to better understand population history, migration, and\ adaptation. It is sampling populations in a way that represents as much\ anthropological, linguistic and cultural diversity as possible, and\ thus includes many deeply divergent human populations that are not well\ represented in other datasets. SGDP emphasizes breadth of global representation and\ population history, whereas HGDP emphasizes continuity and\ comparability across major population groups. Not all iits data is\ public, so this track contains only 279 genomes. For details, see\ (Mallick et al, Nature 2016). The hg38 track was lifted from hg19.\ \
\ Available only on hg38:
\- \
- \ Human Genome Diversity Project (HGDP):\ 929 high-coverage genome sequences from 54 diverse human populations,\ 26 of which are physically phased using linked-read sequencing. The\ Human Genome Diversity Project (HGDP) was launched in the early 1990s\ to study the genetic variation and evolutionary history of modern\ humans across global populations. Its goal was to document the full\ spectrum of human genetic diversity, particularly in indigenous and\ geographically isolated groups, to better understand population\ structure, migration, adaptation, and disease susceptibility.The\ project collected samples from ~1,000 individuals representing over 50\ populations worldwide, including groups from Africa, Europe, Asia,\ Oceania, and the Americas. These data have become a foundational\ reference for population genetics and human evolution studies.\ Data can be downloaded from the\ Sanger Website. For details, see (Bergström et al, Science 2020).\ \ \
- \ gnomAD HGDP and 1000 Genomes callset:\ A reprocessed version by the gnomAD project for the 1000 Genomes and\ Human Genome Diversity Project (HGDP) data, with 4094 genomes from 80\ populations. We already have separate, older tracks for 1000 Genomes on the main hg38\ browser and for HGDP, just above. This track combines both datasets, with harmonized data\ quality. For details, see (Koenig et al, 2024).\ \
Display Conventions
\ \\ Full haplotype display:\ In "pack" mode, this track sorts the haplotypes. This can be\ useful for determining the similarity between the samples and inferring\ inheritance at a particular locus.\ Each sample's phased and/or homozygous genotypes are split into haplotypes,\ clustered by similarity around a central variant (in pink), and sorted for\ display by their position in the clustering tree. Click a variant to center on it.\ The tree (as space allows) is drawn in the label area next to the track image.\ Leaf clusters, in which all haplotypes are identical (at least for the variants\ used in clustering), are colored purple. \
\\ For a full description of how the display works, please see our \ Haplotype Display help page.\ \
Data Access
\\ MXB: Allele frequencies by geographical state and ancestry are available via\ the MexVar platform.\ Raw genotype data are available under controlled access at the\ EGA (Study: EGAS00001005797; Dataset: EGAD00010002361). For the VCFs, email\ andres.moreno@cinvestav.mx.\
\ \Methods
\\ SGDP: The version used was\ https://sharehost.hms.harvard.edu/genetics/reich_lab/sgdp/vcf_variants/,\ merged with bcftools and lifted to hg38 with CrossMap. \
\ \Credits
\\ MXB: We thank the Center for Research and Advanced Studies (Cinvestav) of Mexico for\ generating and providing the frequency data, the National Institute of Medical\ Sciences and Nutrition (INCMNSZ) for DNA extraction, and the Ministry of Health\ together with the National Institute of Public Health (INSP) for the design and\ implementation of the National Health Survey 2000 (ENSA 2000). We also thank\ the ENSA-Genomics Consortium for their contributions to sample collection and\ data processing that made possible the construction of the MXB genomic\ resource.\
\\ SGDP: This project was funded by the Simons Foundation. Thanks to David Reich and Swapan \ Mallick for help with importing the data.\
\ \References
\\
Barberena-Jonas C, Medina-Muñoz SG, Cedillo-Castelán V, Sepúlveda-Morales T,\
Gonzaga-Jáuregui C, ENSA Genomics Consortium, García-García L, Ioannidis AG,\
Moreno-Estrada A.\
\
Clinical genetic variation across Hispanic populations in the Mexican Biobank.\
Nat Med. 2026 Jan 21;.\
DOI: 10.1038/s41591-025-04100-z; PMID:
\
Sohail M, Moreno-Estrada A.\
\
The Mexican Biobank Project promotes genetic discovery, inclusive science and local capacity\
building.\
Dis Model Mech. 2024 Jan 1;17(1).\
PMID: 38299665; PMC:
\
Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Corés CD, Barberena-Jonas C, Medina-Muñoz SG,\
Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L et al.\
\
Mexican Biobank advances population and medical genomics of diverse ancestries.\
Nature. 2023 Oct;622(7984):775-783.\
PMID: 37821706; PMC:
\
Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J\
et al.\
\
Insights into human genetic variation and population history from 929 diverse genomes.\
Science. 2020 Mar 20;367(6484).\
PMID: 32193295; PMC:
\
Koenig Z, Yohannes MT, Nkambule LL, Zhao X, Goodrich JK, Kim HA, Wilson MW, Tiao G, Hao SP, Sahakian\
N et al.\
\
A harmonized public resource of deeply sequenced diverse human genomes.\
Genome Res. 2024 Jun 25;34(5):796-809.\
PMID: 38749656; PMC:
\
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S,\
Tandon A et al.\
\
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.\
Nature. 2016 Oct 13;538(7624):201-206.\
PMID: 27654912; PMC:
Description
\\ This track shows allele frequencies for 147.4 million variants (136.7\ million SNPs and 10.7 million short indels, autosomes only) from\ 10,588 Chinese individuals deep-whole-genome-sequenced at a mean depth\ of about 40x by the China Metabolic Analytics Project (ChinaMAP).\ Participants come from three large Chinese cohort studies (the China\ Noncommunicable Disease Surveillance, the REACTION study and the\ Community-based Cardiovascular Risk During Urbanization in Shanghai\ study) and span 27 provinces of China and eight ethnic populations\ (Han, Hui, Manchu, Miao, Mongolian, Yi, Tibetan and Zhuang). For\ each variant the track records the cohort allele count, allele number\ and allele frequency. The original release also ships the matched 1000\ Genomes Project (1KGP) allele frequencies (global, EAS, AMR, AFR, EUR\ and SAS) as INFO fields, which are kept verbatim in the VCF.\
\ \Display
\\ The track uses the standard UCSC VCF display. When you hover over a\ variant, the popup shows the cohort allele frequency and count, the\ total number of called alleles, and the 1KGP frequencies that the\ ChinaMAP release ships alongside each site.\
\ \Methods
\\ DNA from each participant was prepared with the QIAGEN DNeasy\ Blood & Tissue Kit, sheared by Covaris, ligated to BGISEQ-500\ adapters and rolling-circle amplified into DNA nanoballs for\ 100 bp paired-end sequencing on the BGISEQ-500 platform at BGI\ Genomics. Reads were quality-filtered with SOAPnuke v1.5.6, aligned\ to GRCh38 (GENCODE release) with BWA-MEM v0.7.16a, coordinate-sorted\ with Picard SortSam v2.13.2, and duplicate-marked and base-quality\ recalibrated with GATK v4.beta.4. Samples were required to pass six\ QC criteria (base quality Q30 > 80%, mean depth > 30x, mapping\ rate ≥ 95%, mismatch rate < 1%, duplicate rate < 10% and\ 20x coverage > 80%) and a 21-SNP mass spectrometric fingerprint\ check; 10,588 WGS samples passed. Germline variants were called\ per-sample as GVCFs with GATK HaplotypeCaller v4.0.4.0, combined\ with GATK CombineGVCFs and joint-called with GATK GenotypeGVCFs\ (v4.0.4.0), ignoring low-complexity regions. Variants were filtered\ with GATK VariantFiltration and restricted to length ≤ 10 bp and a\ maximum of 10 alt alleles. Multi-allelic sites were split, and the\ final callset was annotated with SnpEff v4.3. See Cao et al.\ 2020 (in References below) for the full pipeline.\
\\ The bgzipped sites-only VCF\ (mbiobank_ChinaMAP.phase1.vcf.gz) was downloaded from the\ ChinaMAP / mBiobank distribution site\ (http://chinamapwgs.mbiobank.com/download/),\ renamed locally to chinamap.vcf.gz and tabix-indexed. We did\ not need to lift over coordinates or reformat the file: the upstream\ file is already on GRCh38 with chr-prefixed chromosome names,\ autosomes only, and ships standard AC, AF and\ AN INFO fields. The pipeline is recorded in the\ makeDoc\ file of the track.\
\ \Caveats
\\ Only autosomes (chr1-22) are present; chrX, chrY and chrM are not\ in the ChinaMAP phase 1 release. The 1KGP frequency fields\ (1KGP_AF, 1KGP_EAS_AF, 1KGP_AMR_AF,\ 1KGP_AFR_AF, 1KGP_EUR_AF, 1KGP_SAS_AF) are\ carried over verbatim from the ChinaMAP VCF and only populate the\ small fraction of ChinaMAP sites that are also catalogued in the\ matched 1KGP release.\
\ \Data Access
\\ The ChinaMAP Limitations on Use (see the\ ChinaMAP\ download page) prohibit redistribution of the data, so the\ ChinaMAP VCF is not available from the UCSC Table Browser, Data\ Integrator, REST API or the public download server. The track can be\ browsed interactively in the Genome Browser; for bulk access please\ register with the ChinaMAP project at\ http://chinamapwgs.mbiobank.com/\ and download the original VCF directly from them.\
\ \Credits
\\ Thanks to the ChinaMAP participants and to the National Clinical\ Research Center for Metabolic Diseases (Shanghai Jiao Tong\ University School of Medicine, Ruijin Hospital) and BGI Genomics, who\ produced and released the ChinaMAP phase 1 sites VCF.\
\ \References
\ \ \\
Cao Y, Li L, Xu M, Feng Z, Sun X, Lu J, Xu Y, Du P, Wang T, Hu R et al.\
\
The ChinaMAP analytics of deep whole genome sequences in 10,588 individuals.\
Cell Res. 2020 Sep;30(9):717-731.\
PMID: 32355288; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 5\ shortLabel ENCFF801REE_ENCFF053KMZ_ENCFF860MMV_ENCFF804PBU\ subGroups organ=adrenal_gland view=cCREs_view simpleBiosample=adrenal_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF801REE_ENCFF053KMZ_ENCFF860MMV_ENCFF804PBU\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF442VHH ENCSR000AAC + strand bigWig Smooth muscle cell of bladder female adult (53 years) and male adult (62 years) + strand total RNA-seq signal 2 5 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/64b3decb-bb40-4ae7-8256-e6ff890a762e/ENCFF442VHH.bigWig\ color 130,141,158\ longLabel Smooth muscle cell of bladder female adult (53 years) and male adult (62 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAC + strand\ track wgEncodeReg4RnaSeq_ENCFF442VHH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF923ZBP ENCSR000AKB Peak bigBed 5 GM12878 CTCF peaks 4 5 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/01/11/b5831634-d774-4d5d-93e9-1f1b1c657099/ENCFF923ZBP.bigBed\ labelFields none\ longLabel GM12878 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AKB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF923ZBP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF082RJM ENCSR000AKP Peak bigBed 5 K562 H3K27ac peak 4 5 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/a5c944c3-9f56-4887-a6de-9a24003148e9/ENCFF082RJM.bigBed\ color 181,145,0\ longLabel K562 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AKP Peak\ track wgEncodeReg4Epigenetics_ENCFF082RJM\ type bigBed 5\ visibility squish\ wgEncodeReg4MarkCtcfEye Eye bigWig CTCF level of 1 eye experiment (tissues and primary cells only) 0 5 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEyeCTCF.bw\ color 163,127,144\ longLabel CTCF level of 1 eye experiment (tissues and primary cells only)\ parent wgEncodeReg4MarkCtcf off\ priority 5\ shortLabel Eye\ track wgEncodeReg4MarkCtcfEye\ type bigWig\ knownGeneV43 GENCODE V43 bigGenePred GENCODE V43 0 5 0 0 0 127 127 127 0 0 0
Description
\\ The GENCODE Genes track (version 43, February 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The following table provides statistics for the v43 release derived from the GTF file that contains\ annotations only on the main chromosomes. More information on how they were generated can be found\ in the GENCODE site.
\ \\
\ \\
\ GENCODE v43 Release Stats \ Genes Observed Transcripts Observed \ Protein-coding genes 19,393 Protein-coding transcripts 89,411 \ Long non-coding RNA genes 19,928 - full length protein-coding 64,004 \ Small non-coding RNA genes 7,566 - partial length protein-coding 25,407 \ Pseudogenes 14,737 Nonsense mediated decay transcripts 21,354 \ Immunoglobulin/T-cell receptor gene segments 410 Long non-coding RNA loci transcripts 58,023 \ Total No of distinct translations 65,519 Genes that have more than one distinct translations 13,618
\
\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding: protein coding transcripts, including polymorphic\ pseudogenes\
- non-coding: non-protein coding transcripts\
- pseudogene: pseudogene transcript annotations\
- problem: problem transcripts (Biotypes of\ retained_intron, TEC, or disrupted_domain) \
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \ \Squishy-pack Display
\\ Within a gene using the pack display mode, transcripts below a specified rank will be\ condensed into a view similar to squish mode. The transcript ranking approach is\ preliminary and will change in future releases. The transcripts rankings are defined by the\ following criteria for protein-coding and non-coding genes:
\ Protein_coding genes\- \
- MANE or Ensembl canonical\
- \
- 1st: MANE Select / Ensembl canonical \
- 2nd: MANE Plus Clinical \
\
- Coding biotypes\
- \
- 1st: protein_coding and protein_coding_LoF \
- 2nd: NMDs and NSDs \
- 3rd: retained intron and protein_coding_CDS_not_defined \
\
- Completeness\
- \
- 1st: full length \
- 2nd: CDS start/end not found \
\
- CARS score (only for coding transcripts) \
- Transcript genomic span and length (only for non-coding transcripts) \
- \
- Transcript biotype\
- \
- 1st: transcript biotype identical to gene biotype \
\
- Ensembl canonical \
- GENCODE basic \
- Transcript genomic span \
- Transcript length \
Methods
\\
The GENCODE v43 track was built from the GENCODE downloads file \
gencode.v43.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources \
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney.
\ \References
\\
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa\
A, Searle S et al.\
\
GENCODE: the reference human genome annotation for The ENCODE Project.\
Genome Res. 2012 Sep;22(9):1760-74.\
PMID: 22955987; PMC:
\
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R,\
Swarbreck D et al.\
\
GENCODE: producing a reference annotation for ENCODE.\
Genome Biol. 2006;7 Suppl 1:S4.1-9.\
PMID: 16925838; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV43.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV43\ group genes\ html knownGeneV43\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V43\ maxItems 50000\ parent knownGeneArchive\ priority 5\ searchIndex name\ shortLabel GENCODE V43\ squishyPackField rank\ squishyPackPoint 2\ track knownGeneV43\ type bigGenePred\ visibility hide\ geneHancerRegElements GH Reg Elems bigBed 9 + Enhancers and promoters from GeneHancer 1 5 0 0 0 127 127 127 0 0 0 http://www.genecards.org/Search/Keyword?queryString=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerRegElementsAll.hg38.bb\ longLabel Enhancers and promoters from GeneHancer\ parent ghGeneHancer off\ shortLabel GH Reg Elems\ subGroups set=b_ALL view=a_GH\ track geneHancerRegElements\ hgdp1k gnomAD HGDP+1000G 4k WGS vcfTabix Phased Variants: gnomAD HGDP + 1000 genomes callset - 4094 whole genomes, 80 populations 3 5 0 0 0 127 127 127 0 0 0Description
\\ This tracks contains variants of individual genotypes, usually phased, from the projects\ Human Diversity Genome Project, Simons Genome Diversity Project, gnomad's HGDP+1000 Genomes callset,\ and the Mexico Biobank.\ The original release of 1000 Genomes has its own, separate track.\ Projects where the released variants are not phased can be found in the container track "SNV Frequencies".\
\ \\ Available on hg19 and hg38:
\- \
- \ Mexico Biobank (MXB):\ This track displays phased alleles from the Mexico Biobank Project (MXB), based on array\ genotyping of 6,011 individuals sampled across all 32 states of Mexico during the 2000\ National Health Survey (ENSA 2000) conducted by the National Institute of Public Health\ (INSP). Frequencies can be plotted onto a map on\ MexVar.\ The hg38 track was lifted from hg19.\ \ \
- \ Simons Genome Diversity Project (SGDP):\ Funded by the Simons Foundation, the Simons Genome Diversity Project\ is a large-scale effort that sequenced high-coverage genomes from 300\ individuals (279 in this track) representing 142 diverse and often\ indigenous populations worldwide.\ Its goal was to capture the full range of human genetic\ diversity to better understand population history, migration, and\ adaptation. It is sampling populations in a way that represents as much\ anthropological, linguistic and cultural diversity as possible, and\ thus includes many deeply divergent human populations that are not well\ represented in other datasets. SGDP emphasizes breadth of global representation and\ population history, whereas HGDP emphasizes continuity and\ comparability across major population groups. Not all iits data is\ public, so this track contains only 279 genomes. For details, see\ (Mallick et al, Nature 2016). The hg38 track was lifted from hg19.\ \
\ Available only on hg38:
\- \
- \ Human Genome Diversity Project (HGDP):\ 929 high-coverage genome sequences from 54 diverse human populations,\ 26 of which are physically phased using linked-read sequencing. The\ Human Genome Diversity Project (HGDP) was launched in the early 1990s\ to study the genetic variation and evolutionary history of modern\ humans across global populations. Its goal was to document the full\ spectrum of human genetic diversity, particularly in indigenous and\ geographically isolated groups, to better understand population\ structure, migration, adaptation, and disease susceptibility.The\ project collected samples from ~1,000 individuals representing over 50\ populations worldwide, including groups from Africa, Europe, Asia,\ Oceania, and the Americas. These data have become a foundational\ reference for population genetics and human evolution studies.\ Data can be downloaded from the\ Sanger Website. For details, see (Bergström et al, Science 2020).\ \ \
- \ gnomAD HGDP and 1000 Genomes callset:\ A reprocessed version by the gnomAD project for the 1000 Genomes and\ Human Genome Diversity Project (HGDP) data, with 4094 genomes from 80\ populations. We already have separate, older tracks for 1000 Genomes on the main hg38\ browser and for HGDP, just above. This track combines both datasets, with harmonized data\ quality. For details, see (Koenig et al, 2024).\ \
Display Conventions
\ \\ Full haplotype display:\ In "pack" mode, this track sorts the haplotypes. This can be\ useful for determining the similarity between the samples and inferring\ inheritance at a particular locus.\ Each sample's phased and/or homozygous genotypes are split into haplotypes,\ clustered by similarity around a central variant (in pink), and sorted for\ display by their position in the clustering tree. Click a variant to center on it.\ The tree (as space allows) is drawn in the label area next to the track image.\ Leaf clusters, in which all haplotypes are identical (at least for the variants\ used in clustering), are colored purple. \
\\ For a full description of how the display works, please see our \ Haplotype Display help page.\ \
Data Access
\\ MXB: Allele frequencies by geographical state and ancestry are available via\ the MexVar platform.\ Raw genotype data are available under controlled access at the\ EGA (Study: EGAS00001005797; Dataset: EGAD00010002361). For the VCFs, email\ andres.moreno@cinvestav.mx.\
\ \Methods
\\ SGDP: The version used was\ https://sharehost.hms.harvard.edu/genetics/reich_lab/sgdp/vcf_variants/,\ merged with bcftools and lifted to hg38 with CrossMap. \
\ \Credits
\\ MXB: We thank the Center for Research and Advanced Studies (Cinvestav) of Mexico for\ generating and providing the frequency data, the National Institute of Medical\ Sciences and Nutrition (INCMNSZ) for DNA extraction, and the Ministry of Health\ together with the National Institute of Public Health (INSP) for the design and\ implementation of the National Health Survey 2000 (ENSA 2000). We also thank\ the ENSA-Genomics Consortium for their contributions to sample collection and\ data processing that made possible the construction of the MXB genomic\ resource.\
\\ SGDP: This project was funded by the Simons Foundation. Thanks to David Reich and Swapan \ Mallick for help with importing the data.\
\ \References
\\
Barberena-Jonas C, Medina-Muñoz SG, Cedillo-Castelán V, Sepúlveda-Morales T,\
Gonzaga-Jáuregui C, ENSA Genomics Consortium, García-García L, Ioannidis AG,\
Moreno-Estrada A.\
\
Clinical genetic variation across Hispanic populations in the Mexican Biobank.\
Nat Med. 2026 Jan 21;.\
DOI: 10.1038/s41591-025-04100-z; PMID:
\
Sohail M, Moreno-Estrada A.\
\
The Mexican Biobank Project promotes genetic discovery, inclusive science and local capacity\
building.\
Dis Model Mech. 2024 Jan 1;17(1).\
PMID: 38299665; PMC:
\
Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Corés CD, Barberena-Jonas C, Medina-Muñoz SG,\
Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L et al.\
\
Mexican Biobank advances population and medical genomics of diverse ancestries.\
Nature. 2023 Oct;622(7984):775-783.\
PMID: 37821706; PMC:
\
Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J\
et al.\
\
Insights into human genetic variation and population history from 929 diverse genomes.\
Science. 2020 Mar 20;367(6484).\
PMID: 32193295; PMC:
\
Koenig Z, Yohannes MT, Nkambule LL, Zhao X, Goodrich JK, Kim HA, Wilson MW, Tiao G, Hao SP, Sahakian\
N et al.\
\
A harmonized public resource of deeply sequenced diverse human genomes.\
Genome Res. 2024 Jun 25;34(5):796-809.\
PMID: 38749656; PMC:
\
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S,\
Tandon A et al.\
\
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.\
Nature. 2016 Oct 13;538(7624):201-206.\
PMID: 27654912; PMC:
Description
\\ The Genome Aggregation Database (gnomAD) v3 - Genome Coverage track shows how many\ times regions of the genomes were sequenced. This track includes several subtracks of average\ coverage metrics and sample percentage of coverage.\
\\ There is no gnomAD v4 genome coverage track because the genomes were unchanged from V3. There is no\ gnomAD v3 exomes track because v3 was a genome-only release.
\ \Display Conventions
\\ The Average Sample Coverage tracks display the mean and median read depth of the\ samples at each base position. The details page shows calculated sample percentages for the range\ of sequence within the browser window.\
\ \\ The nX Coverage Percentage tracks display the percentage of samples whose read\ depth is at least 1X, 5X, 10X, 15X, 20X, 25X, 30X, 50X, and 100X at each base position. The details\ page shows calculated sample percentages for the range of sequence within the browser window.\
\ \Methods
\\ Coverage was computed using all 71,702 gnomAD v3.01 samples from their gVCFs. The gVCFs were\ produced using a 3-bin blocking scheme:\
\- \
- No coverage \
- Reference genotype quality < Q20 \
- Reference genotype quality ≥ Q20 \
\ The coverage was binned by quality using the thresholds above and the median coverage value for each\ of the resulting coverage blocks was used to compute the coverage metrics presented in the browser.\ Coverage was computed for all callable bases in the genome (all non-N bases, minus telomeres and\ centromeres).\
\ \Data Access
\ \\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that \
can be downloaded from our
\ The data can also be found directly from the gnomAD downloads page. Please refer to \ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
References
\ \\
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\
AJ, Cummings BB et al.\
\
Analysis of protein-coding genetic variation in 60,706 humans.\
Nature. 2016 Aug 18;536(7616):285-91.\
PMID: 27535533; PMC:
\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\
Ganna A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\
Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\
Gauthier LD, Wang H et al.\
\
A structural variation reference for medical and population genetics.\
Nature. 2020 May;581(7809):444-451.\
PMID: 32461652; PMC:
\
Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\
Satterstrom FK, O'Donnell-Luria AH et al.\
\
Transcript expression-aware annotation improves rare variant interpretation.\
Nature. 2020 May;581(7809):452-458.\
PMID: 32461655; PMC:
Description
\Agilent Arrays
\\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\
\Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\
\ \\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\
\ \Illumina 450k and 850k Methylation Arrays
\\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks, not the probe locations themselves. Contact us\ or Illumina if you need the probe locations directly. More information about\ the arrays can be found on the\ Infinium MethylationEPIC Kit website.\
\ Note: The 450k track on hg38 contains 128,989 regions representing the target regions, not the probes\ themselves.
\ \Illumina CytoSNP 850K Probe Array
\\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \
\ \Affymetrix Cytoscan HD GeneChip Array
\\ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\
\ \Bionano DLE-1 CTTAAG sites
\ \\ Bionano Laboratories provides access to Optical Genome Mapping (OGM) data for projects across a variety of\ applications for researchers, clinicians, and pharmaceutical companies.
\This track shows the CTTAAG sites used by the \ Bionano Optical Genome Mapping system,\ an assay to detect structural variants.\
\ \Display Conventions and Configuration
\ \\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \ \Methods
\\ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.
\\ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.
\\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\
\\ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\
\\ The Bionano track was created by receiving the BED files from\ \ apang@bionano.\ com\ \ and converted to bigBed files using the bedToBigBed tool.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the Agilent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.
\\ Thanks to Andy Pang from Bionano Genomics for providing the BED data file.
\ varRep 1 bigDataUrl /gbdb/hg38/bbi/illumina/epic850K.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina 850k EPIC Methylation Array\ noScoreFilter on\ parent genotypeArrays on\ priority 5\ shortLabel Illumina 850k\ track snpArrayIllumina850k\ type bigBed 6\ urls refGeneAccession="https://www.ncbi.nlm.nih.gov/nuccore/$$" rsID="https://www.ncbi.nlm.nih.gov/snp/?term=$$"\ visibility pack\ wgEncodeRegMarkH3k27acK562 K562 bigWig 0 6249 H3K27Ac Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE 2 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k27acStdSig\ track wgEncodeRegMarkH3k27acK562\ type bigWig 0 6249\ wgEncodeRegMarkH3k4me1K562 K562 bigWig 0 5716 H3K4Me1 Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE 0 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on K562 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k4me1StdSig\ track wgEncodeRegMarkH3k4me1K562\ type bigWig 0 5716\ wgEncodeRegMarkH3k4me3K562 K562 bigWig 0 9918 H3K4Me3 Mark (Often Found Near Promoters) on K562 Cells from ENCODE 0 5 128 128 255 191 191 255 0 0 0 regulation 1 color 128,128,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on K562 Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel K562\ table wgEncodeBroadHistoneK562H3k4me3StdSig\ track wgEncodeRegMarkH3k4me3K562\ type bigWig 0 9918\ KAPA_HyperExome_hg38_capture_targets KAPA Hyper P bigBed Roche - KAPA HyperExome Capture Probe Footprint 0 5 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/KAPA_HyperExome_hg38_capture_targets.bb\ color 100,143,255\ longLabel Roche - KAPA HyperExome Capture Probe Footprint\ parent exomeProbesets off\ shortLabel KAPA Hyper P\ track KAPA_HyperExome_hg38_capture_targets\ type bigBed\ wgEncodeReg4AtacLiver Liver bigWig Avg. ATAC level of 7 liver experiments (tissues and primary cells only) 0 5 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLiverATAC.bw\ color 137,152,82\ longLabel Avg. ATAC level of 7 liver experiments (tissues and primary cells only)\ parent wgEncodeReg4Atac\ priority 5\ shortLabel Liver\ track wgEncodeReg4AtacLiver\ type bigWig\ dbSnp153BadCoords Map Err dbSnp(153) bigBed 4 Mappings with Inconsistent Coordinates from dbSNP 153 1 5 100 100 100 177 177 177 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp153BadCoords.bb\ color 100,100,100\ longLabel Mappings with Inconsistent Coordinates from dbSNP 153\ parent dbSnp153ViewErrs off\ priority 5\ shortLabel Map Err dbSnp(153)\ subGroups view=errs\ track dbSnp153BadCoords\ type bigBed 4\ dbSnp155BadCoords Map Err dbSnp(155) bigBed 4 Mappings with Inconsistent Coordinates from dbSNP 155 1 5 100 100 100 177 177 177 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$ varRep 1 bigDataUrl /gbdb/hg38/snp/dbSnp155BadCoords.bb\ color 100,100,100\ longLabel Mappings with Inconsistent Coordinates from dbSNP 155\ parent dbSnp155ViewErrs off\ priority 5\ shortLabel Map Err dbSnp(155)\ subGroups view=errs\ track dbSnp155BadCoords\ type bigBed 4\ multiz470way Multiz 470-way bigMaf Multiz Alignments of 470 mammals 3 5 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470way.bigMaf\ color 0, 10, 100\ frames https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470wayFrames.bb\ group compGeno\ irows on\ itemFirstCharCase noChange\ longLabel Multiz Alignments of 470 mammals\ noInherit on\ parent cons470wayViewalign on\ priority 5\ sGroup_Afrotheria triMan1 HLloxAfr4 HLeleMax1 HLdugDug1 oryAfe1 HLproCap3 HLhetBru1 chrAsi1 echTel2 HLhydGig1 eleEdw1 HLmicTal1\ sGroup_Artiodactyla HLbalMus1 HLeubGla1 HLbalEde1 balAcu1 HLeubJap1 HLmegNov1 HLmonMon1 HLphoSin1 HLlagObl1 HLgloMel1 HLpepEle1 HLbalMys1 HLneoAsi1 HLplaMin1 HLbalPhy1 HLmesBid1 HLkogBre1 HLlniGeo1 HLlamGuaCac1 HLvicVicMen1 HLvicPacHua3 HLlamGlaCha1 HLponBla1 HLzipCav1 HLlamGla1 HLcerHanYar1 HLmunMun1 HLbosGau1 HLaxiPor1 HLranTarGra2 HLranTar1 HLoviOri1 HLgirCam1 HLsynCaf1 HLoryDam1 HLcapSib1 HLmunRee1 HLcatWag1 HLhipEqu1 HLhipNig1 HLcapPyg1 HLhydIne1 HLodoVir1 HLprzAlb1 HLgirCam2 HLhemHyl1 HLmosMos1 HLbeaHun1 HLalcAlc1 HLoviNivLyd1 HLconTau2 HLdamLun1 HLodoHem1 HLoryGaz1 HLkobLecLec1 HLantAme1 HLbosFro1 HLeudTho1 HLkobEll1 HLlitWal1 HLoreAme1 HLbosGru1 bisBis1 HLmosBer1 HLcepHar1 HLaepMel1 HLantMar1 HLoviCan1 HLoreOre1 HLmunCri1 HLproPrz1 HLmadKir1 HLsylGri1 HLtraJav1 HLredRed1 HLsaiTat1 HLtraScr1 HLcerEla1 HLneoMos1 HLnanGra1 HLtraImb1 HLneoPyg1 HLphiMax1 HLrapCam1 HLtraKan1 HLmosChr1 HLcapIbe1\ sGroup_Carnivore HLphoVit1 HLzalCal1 HLodoRos1 HLursArc1 HLeumJub1 odoRosDiv1 neoSch1 HLcalUrs1 HLmirLeo1 HLursThi1 HLeriBar1 HLhalGry1 HLmirAng2 ursMar1 HLursAme2 HLailMel2 felCat9 HLneoNeb1 HLaciJub2 HLpanPar1 HLpanLeo1 HLursAme1 HLlynCan1 HLpumYag1 lepWed1 panTig1 HLpanOnc1 HLpanOnc2 HLarcGaz2 HLcryFer2 canFam4 HLlynPar1 HLpriBen1 enhLutKen1 canFam5 HLailFul2 HLcanLupDin1 HLlonCan1 HLlutLut1 HLvulVul1 HLpumCon1 HLmusErm1 HLpotFla1 HLpteBra2 HLlycPic3 HLhyaHya1 enhLutNer1 HLpteBra1 HLfelNig1 HLmelCap1 HLmusFur2 HLmarZib1 HLvulLag1 HLmusPut1 HLcroCro1 HLparHer1 HLgulGul1 HLneoVis1 HLsurSur1 HLmunMug1 HLbasSum1 HLspiGra1 HLhelPar1 HLsurSur2 HLtaxTax1 HLnasNar1 HLproLot1 HLlycPic2\ sGroup_Cetartiodactyla HLescRob1 HLphyCat2 HLhipAmp3 HLdelLeu2 HLturTru4 phyCat1 HLturAdu2 orcOrc1 HLsouChi1 lipVex1 HLturAdu1 HLbalBon1 HLphoPho1 HLphoPho2 HLturTru3 turTru2 HLcamDro2 HLhipAmp1 HLcamFer3 HLcamBac1 vicPac2 susScr11 bosTau9 HLbubBub2 HLodoVir3 HLelaDav1 HLbosInd2 HLoviAri5 HLcapHir2 HLodoVir2 HLbosMut2 HLcapAeg1 HLammLer1 panHod1 HLgirTip1 HLoviCan2 HLokaJoh2 HLtraStr1 HLoviAmm1\ sGroup_Chiroptera HLrhiFer5 HLrhiSin1 HLptePse1 HLpteGig1 pteAle1 HLpteRuf1 HLhipGal1 HLrouAeg4 HLpteVam2 HLrouLes1 HLhipArm1 HLeonSpe1 HLeidDup1 HLmacSob1 HLeidHel2 HLtadBra1 HLrouMad1 HLdesRot2 HLmolMol2 HLphyDis3 HLlepYer1 HLmorBla1 HLmegLyr2 HLtonSau1 HLanoCau1 HLcarPer3 HLartJam2 HLminNat1 ptePar1 HLartJam1 HLminSch1 HLmacCal1 HLstuHon1 HLcynBra1 HLmyoMyo6 HLmicHir1 HLcraTho1 HLmyoSep1 myoBra1 eptFus1 HLmyoLuc1 myoLuc2 HLnocLep1 myoDav1 HLmurAurFea1 HLnycHum2 HLantPal1 HLaeoCin1 HLlasBor1 HLpipKuh2 HLpipPip2 HLpipPip1\ sGroup_Euarchontoglires HLgalVar2 tupChi1 tupBel1\ sGroup_Glires HLsciCar1 HLsciVul1 HLmarMon2 HLmarFla1 HLxerIna1 HLmarMar1 HLcynGun1 HLmarMon1 HLmarHim1 HLspeDau1 HLmarVan1 HLuroPar1 speTri2 HLereDor1 HLaplRuf1 HLpedCap1 HLgliGli1 hetGla2 HLhysCri1 HLcoePre1 chiLan1 HLdasPun1 HLcasCan3 HLoryCunCun4 HLgraMur1 HLdinBra1 HLfukDam2 oryCun2 HLlepAme1 HLhydHyd1 HLsylBac1 HLcavTsc1 HLdolPat1 cavPor3 HLmusAve1 HLoryCun3 HLlepTim1 octDeg1 HLcteGun1 HLcteSoc1 HLpetTyp1 nanGal1 HLthrSwi1 HLmyoCoy1 HLperCal2 HLperCri1 HLperManBai2 HLperPol1 HLperNas1 HLperLeu1 HLperEre1 HLrhiPru1 HLonyTor1 HLallBul1 jacJac1 HLcriGam1 HLcriGri3 HLondZib1 ochPri3 HLgraSur1 HLarvAmp1 HLarvNil1 HLellTal1 mm10 mm39 HLdipSte1 dipOrd2 HLacoRus1 HLmasCou1 HLzapHud1 HLmicAgr2 HLpsaObe1 HLmusSpr1 HLmyoGla2 HLmusCar1 micOch1 HLratNor7 HLellLut1 HLmusPah1 HLrhoOpi1 HLacoCah1 rn6 HLmusSpi1 HLmicFor1 HLmicArv1 HLmicOec1 HLsigHis1 HLratRat7 HLneoLep1 mesAur1 HLmerUng1 HLperLonPac1 cavApe1 HLapoSyl1\ sGroup_Laurasiatheria HLdicBic1 cerSim1 HLrhiUni1 HLdicSum1 HLtapInd1 HLtapTer1 HLtapInd2 equCab3 HLcerSimCot1 HLequAsi1 HLequQuaBoe1 HLequAsiAsi2 equPrz1 HLmanPen2 HLphaTri2 HLmanJav1 HLmanJav2 HLmanTri1 manPen1 HLsolPar1 HLtalOcc1 HLscaAqu1 HLuroGra1 conCri1 sorAra2 eriEur2\ sGroup_Metatheria HLvomUrs1 HLphaCin1 HLtriVul1 HLgymLea1 HLmacGig1 HLphaGym1 HLnotEug3 HLantFla1 HLmacFul1 HLsarHar2 HLpseCup1 monDom5 HLgraAgi1 HLospRuf1 HLdidVir1 HLpseCor1 HLpseOcc1 HLthyCyn1 macEug2\ sGroup_Monotremata HLornAna3 HLtacAcu1\ sGroup_Primates panTro6 panPan3 gorGor6 ponAbe3 HLnomLeu4 HLhylMol2 rheMac10 HLmacFas6 HLtheGel1 HLmacFus1 HLrhiRox2 chlSab2 HLpapAnu5 cerAty1 HLmanSph1 macNem1 HLtraFra1 HLpygNem1 HLpilTep2 HLeryPat1 HLallNig1 rhiBie1 HLcerMon1 manLeu1 HLsemEnt1 colAng1 HLcerNeg1 HLpitPit1 HLateGeo1 HLsapApe1 HLaloPal1 HLpleDon1 cebCap1 HLcalJac4 aotNan1 HLsagImp1 HLcalPym1 HLcebAlb1 nasLar1 HLsaiBol1 saiBol1 HLdauMad1 tarSyr2 HLindInd1 HLmirZaz1 eulMac1 micMur3 HLproSim1 HLeulFla1 HLmirCoq1 HLlemCat1 HLcheMed1 HLmicSpe31 HLeulFul1 eulFla1 HLmicTav1 HLeulMon1 proCoq1 HLnycCou1 otoGar3\ sGroup_Xenarthra HLchoDid2 HLchoHof3 HLchoDid1 HLtamTet1 HLmyrTri1 dasNov3 HLtolMat1\ shortLabel Multiz 470-way\ speciesCodonDefault hg38\ speciesDefaultOff panPan3 gorGor6 ponAbe3 HLnomLeu4 HLhylMol2 macNem1 HLtheGel1 HLmacFas6 HLcerMon1 HLpilTep2 colAng1 manLeu1 cerAty1 HLpapAnu5 HLmanSph1 HLsemEnt1 HLmacFus1 HLtraFra1 rhiBie1 HLrhiRox2 HLpygNem1 HLcerNeg1 nasLar1 HLallNig1 chlSab2 HLeryPat1 HLpitPit1 HLateGeo1 aotNan1 HLpleDon1 HLaloPal1 HLsaiBol1 HLsagImp1 saiBol1 HLcalJac4 HLcalPym1 HLsapApe1 cebCap1 HLcebAlb1 HLdauMad1 proCoq1 HLgalVar2 HLindInd1 HLeulFul1 eulFla1 HLlemCat1 HLproSim1 HLeulMon1 HLeulFla1 HLcheMed1 eulMac1 tarSyr2 micMur3 HLmirZaz1 HLmirCoq1 HLmicSpe31 HLmicTav1 HLnycCou1 otoGar3 HLtapTer1 HLrhiUni1 HLtapInd1 HLtapInd2 HLdicBic1 HLdicSum1 HLcerSimCot1 cerSim1 HLequQuaBoe1 equPrz1 HLequAsi1 HLequAsiAsi2 HLeubGla1 HLsciCar1 HLeubJap1 HLsciVul1 balAcu1 HLbalBon1 HLxerIna1 HLmegNov1 HLbalPhy1 HLbalMys1 tupChi1 HLbalEde1 HLaplRuf1 HLescRob1 HLmarFla1 phyCat1 HLphyCat2 HLmarMar1 HLmesBid1 HLchoHof3 HLchoDid2 HLmarVan1 HLplaMin1 HLmarHim1 HLspeDau1 HLmarMon1 HLmarMon2 HLzipCav1 HLuroPar1 lipVex1 HLdelLeu2 HLlniGeo1 HLcynGun1 HLmonMon1 HLhipAmp3 HLhipAmp1 speTri2 HLneoAsi1 HLpumCon1 panTig1 HLkogBre1 HLneoNeb1 HLpanPar1 HLphoSin1 HLeriBar1 HLmanTri1 HLgliGli1 HLdugDug1 HLphaTri2 HLpanOnc1 HLphoVit1 HLaciJub2 HLhalGry1 HLchoDid1 HLpedCap1 HLphoPho2 HLphoPho1 neoSch1 lepWed1 HLpanOnc2 HLponBla1 HLpriBen1 HLcamFer3 orcOrc1 HLmanPen2 HLcasCan3 HLursThi1 HLrhiSin1 HLlynPar1 HLmirLeo1 HLlynCan1 HLmirAng2 HLpanLeo1 HLcamBac1 HLsouChi1 manPen1 HLodoRos1 HLcalUrs1 odoRosDiv1 HLvicPacHua3 HLhipArm1 HLlamGla1 HLailMel2 HLzalCal1 HLeumJub1 felCat9 HLpumYag1 pteAle1 HLursArc1 ursMar1 HLpepEle1 HLgloMel1 HLrhiFer5 HLarcGaz2 HLcamDro2 HLlagObl1 HLptePse1 HLmanJav1 HLmanJav2 vicPac2 HLvicVicMen1 HLlamGuaCac1 HLlamGlaCha1 HLturTru4 HLturAdu1 HLturAdu2 HLursAme1 HLursAme2 triMan1 HLtadBra1 HLpteVam2 turTru2 HLpteRuf1 HLpteGig1 HLturTru3 HLfelNig1 HLeidDup1 HLeidHel2 HLeleMax1 HLhipGal1 HLloxAfr4 tupBel1 HLcynBra1 HLeonSpe1 HLcryFer2 HLgraMur1 HLmyrTri1 oryAfe1 HLrouLes1 HLrouAeg4 HLrouMad1 HLvulVul1 HLvulLag1 HLlycPic3 HLtamTet1 HLcanLupDin1 canFam5 HLpotFla1 HLhydGig1 HLmegLyr2 HLlycPic2 HLailFul2 HLmolMol2 HLcroCro1 HLmacSob1 HLhyaHya1 HLlepTim1 susScr11 HLminSch1 HLparHer1 HLminNat1 HLlepAme1 HLcraTho1 HLcatWag1 HLmorBla1 HLoryCunCun4 ptePar1 oryCun2 HLoryCun3 HLsylBac1 HLnasNar1 HLhysCri1 HLereDor1 HLcoePre1 HLmarZib1 HLgulGul1 HLproLot1 HLbasSum1 HLspiGra1 HLtaxTax1 HLmelCap1 HLmusAve1 HLsurSur2 HLsurSur1 HLmunMug1 HLhelPar1 HLscaAqu1 HLlonCan1 HLpteBra2 HLpteBra1 enhLutNer1 enhLutKen1 HLlutLut1 HLmyoMyo6 hetGla2 myoBra1 HLdesRot2 HLtalOcc1 HLgirCam1 HLokaJoh2 HLmacCal1 HLmusErm1 HLmyoSep1 HLneoVis1 HLgirCam2 HLgirTip1 HLmyoLuc1 myoLuc2 HLmusPut1 HLmusFur2 HLlepYer1 myoDav1 HLsynCaf1 HLbubBub2 HLmosBer1 HLmosMos1 HLmosChr1 HLcerHanYar1 HLmicHir1 HLbosInd2 chrAsi1 HLbosGau1 HLanoCau1 HLbosFro1 HLbosMut2 HLprzAlb1 HLmurAurFea1 HLnocLep1 HLhipEqu1 HLcepHar1 HLhipNig1 HLbosGru1 HLoryDam1 HLsylGri1 HLphiMax1 HLoryGaz1 HLtraStr1 HLantAme1 HLmunRee1 HLmunCri1 HLcerEla1 HLtraImb1 HLconTau2 HLtraScr1 HLkobEll1 HLmunMun1 HLammLer1 HLdamLun1 HLoviCan1 HLkobLecLec1 HLcapPyg1 HLcapHir2 HLcapAeg1 panHod1 HLalcAlc1 HLbeaHun1 HLaepMel1 HLodoHem1 HLredRed1 HLfukDam2 HLcapSib1 HLodoVir3 HLranTarGra2 HLranTar1 HLoreOre1 HLhydIne1 HLoviCan2 HLoviNivLyd1 HLneoMos1 HLodoVir2 HLodoVir1 HLhemHyl1 HLoviOri1 HLoviAri5 HLneoPyg1 nanGal1 HLnanGra1 HLproPrz1 HLrapCam1 HLeudTho1 HLantMar1 chiLan1 HLdasPun1 HLcteGun1 HLlitWal1 HLmadKir1 HLcarPer3 HLaxiPor1 HLphyDis3 HLtonSau1 HLtraJav1 HLartJam1 HLartJam2 HLhetBru1 HLuroGra1 HLtraKan1 conCri1 HLstuHon1 HLoreAme1 HLallBul1 HLelaDav1 HLsaiTat1 HLaeoCin1 HLdipSte1 dipOrd2 HLtolMat1 HLantPal1 HLrhiPru1 HLnycHum2 HLoviAmm1 HLcapIbe1 HLdinBra1 jacJac1 HLzapHud1 HLdolPat1 HLlasBor1 HLpipKuh2 HLperLonPac1 HLhydHyd1 HLpipPip1 HLpipPip2 ochPri3 eleEdw1 cavApe1 HLpetTyp1 HLcavTsc1 cavPor3 HLthrSwi1 octDeg1 HLcriGam1 HLneoLep1 HLcteSoc1 HLmyoCoy1 echTel2 eriEur2 HLperNas1 HLcriGri3 HLperCri1 HLondZib1 HLperCal2 HLperEre1 HLonyTor1 mesAur1 HLperLeu1 HLellTal1 HLperPol1 HLperManBai2 HLsigHis1 HLellLut1 HLmyoGla2 HLarvAmp1 HLpsaObe1 HLacoRus1 HLgraSur1 HLarvNil1 HLmicOec1 HLmicTal1 HLmicAgr2 HLmicFor1 HLacoCah1 HLmicArv1 micOch1 HLrhoOpi1 HLmasCou1 HLmerUng1 HLratRat7 HLratNor7 rn6 HLmusPah1 HLmusCar1 HLmusSpi1 mm10 HLmusSpr1 HLapoSyl1 sorAra2 HLvomUrs1 HLphaCin1 HLgraAgi1 HLtriVul1 HLdidVir1 HLphaGym1 monDom5 HLgymLea1 HLthyCyn1 HLpseCup1 HLmacGig1 HLpseCor1 HLmacFul1 HLnotEug3 HLospRuf1 HLpseOcc1 macEug2 HLantFla1 HLornAna3 HLtacAcu1\ speciesDefaultOn panTro6 rheMac10 canFam4 equCab3 HLsolPar1 bosTau9 HLbalMus1 bisBis1 dasNov3 eptFus1 mm39 HLproCap3 HLsarHar2 HLtacAcu1\ speciesGroups Primates Euarchontoglires Carnivore Laurasiatheria Cetartiodactyla Artiodactyla Xenarthra Chiroptera Glires Afrotheria Metatheria Monotremata\ speciesLabels HLnomLeu4="northern white-cheeked gibbon" HLhylMol2="silvery gibbon" HLtheGel1=gelada HLmacFas6="crab-eating macaque" HLcerMon1="Mona monkey" HLpilTep2="Ugandan red Colobus" HLpapAnu5="olive baboon" HLmanSph1=mandrill HLsemEnt1="Hanuman langur" HLmacFus1="Japanese macaque" HLtraFra1="Francois's langur" HLrhiRox2="golden snub-nosed monkey" HLpygNem1="Red shanked douc langur" HLcerNeg1="De Brazza's monkey" HLallNig1="Allen's swamp monkey" HLeryPat1="red guenon" HLpitPit1="white-faced saki" HLateGeo1="black-handed spider monkey" HLpleDon1="Bolivian titi" HLaloPal1="mantled howler monkey" HLsaiBol1="Bolivian squirrel monkey" HLsagImp1=tamarin HLcalJac4="white-tufted-ear marmoset" HLcalPym1="pygmy marmoset" HLsapApe1="tufted capuchin" HLcebAlb1="white-fronted capuchin" HLdauMad1=aye-aye HLgalVar2="Sunda flying lemur" HLindInd1=babakoto HLeulFul1="brown lemur" HLlemCat1="Ring-tailed lemur" HLproSim1="greater bamboo lemur" HLeulMon1="mongoose lemur" HLeulFla1="Sclater's lemur" HLcheMed1="Lesser dwarf lemur" HLmirZaz1="Northern giant mouse lemur" HLmirCoq1="Coquerel's mouse lemur" HLmicSpe31="mouse lemur" HLmicTav1="Northern rufous mouse lemur" HLnycCou1="slow loris" HLtapTer1="Brazilian tapir" HLrhiUni1="greater Indian rhinoceros" HLtapInd1="Asiatic tapir" HLtapInd2="Asiatic tapir" HLdicBic1="black rhinoceros" HLdicSum1="Sumatran rhinoceros" HLcerSimCot1="northern white rhinoceros" HLequQuaBoe1="Equus burchelli boehmi" HLequAsi1=ass HLequAsiAsi2=donkey HLeubGla1="North Atlantic right whale" HLsciCar1="gray squirrel" HLeubJap1="North Pacific right whale" HLsciVul1="Eurasian red squirrel" HLbalBon1="Antarctic minke whale" HLxerIna1="South African ground squirrel" HLmegNov1="humpback whale" HLbalPhy1="Fin whale" HLbalMys1="bowhead whale" HLbalMus1="Blue whale" HLbalEde1="pygmy Bryde's whale" HLaplRuf1="mountain beaver" HLescRob1="grey whale" HLmarFla1="yellow-bellied marmot" HLphyCat2="sperm whale" HLmarMar1="Alpine marmot" HLmesBid1="Sowerby's beaked whale" HLchoHof3="Hoffmann's two-fingered sloth" HLchoDid2="southern two-toed sloth" HLmarVan1="Vancouver Island marmot" HLplaMin1="Indus River dolphin" HLmarHim1="Himalayan marmot" HLspeDau1="Daurian ground squirrel" HLmarMon1=woodchuck HLmarMon2=woodchuck HLzipCav1="Cuvier's beaked whale" HLuroPar1="Arctic ground squirrel" HLdelLeu2="beluga whale" HLlniGeo1=boutu HLcynGun1="Gunnison's prairie dog" HLmonMon1=narwhal HLhipAmp3=hippopotamus HLhipAmp1=hippopotamus HLneoAsi1="Yangtze finless porpoise" HLpumCon1=puma HLkogBre1="pygmy sperm whale" HLneoNeb1="Clouded leopard" HLpanPar1=leopard HLphoSin1=vaquita HLeriBar1="bearded seal" HLmanTri1="Tree pangolin" HLgliGli1="Fat dormouse" HLdugDug1=dugong HLphaTri2="Tree pangolin" HLpanOnc1=jaguar HLphoVit1="harbor seal" HLaciJub2=cheetah HLhalGry1="gray seal" HLchoDid1="southern two-toed sloth" HLpedCap1=springhare HLphoPho2="harbor porpoise" HLphoPho1="harbor porpoise" HLpanOnc2=jaguar HLponBla1=franciscana HLpriBen1="Amur leopard cat" HLcamFer3="Wild Bactrian camel" HLmanPen2="Chinese pangolin" HLcasCan3="American beaver" HLursThi1="Asian black bear" HLrhiSin1="Chinese rufous horseshoe bat" HLlynPar1="Spanish lynx" HLmirLeo1="Southern elephant seal" HLlynCan1="Canada lynx" HLmirAng2="Northern elephant seal" HLpanLeo1=lion HLcamBac1="Bactrian camel" HLsouChi1="Indo-pacific humpbacked dolphin" HLodoRos1=walrus HLcalUrs1="northern fur seal" HLvicPacHua3="Lama pacos huacaya" HLhipArm1="great roundleaf bat" HLlamGla1=llama HLailMel2="giant panda" HLzalCal1="California sea lion" HLeumJub1="Steller sea lion" HLpumYag1=jaguarundi HLursArc1="grizzly bear" HLpepEle1="melon-headed whale" HLgloMel1="long-finned pilot whale" HLrhiFer5="greater horseshoe bat" HLarcGaz2="antarctic fur seal" HLcamDro2="Arabian camel" HLlagObl1="Pacific white-sided dolphin" HLptePse1="Bonin flying fox" HLmanJav1="Malayan pangolin" HLmanJav2="Malayan pangolin" HLvicVicMen1="Vicugna mensalis" HLlamGuaCac1=guanaco HLlamGlaCha1=llama HLturTru4="common bottlenose dolphin" HLturAdu1="Indo-pacific bottlenose dolphin" HLturAdu2="Indo-pacific bottlenose dolphin" HLursAme1="American black bear" HLursAme2="American black bear" HLtadBra1="Brazilian free-tailed bat" HLpteVam2="large flying fox" HLpteRuf1="Malagasy flying fox" HLpteGig1="Indian flying fox" HLturTru3="common bottlenose dolphin" HLfelNig1="black-footed cat" HLeidDup1="Malagasy straw-colored fruit bat" HLeidHel2="straw-colored fruit bat" HLeleMax1="Asiatic elephant" HLhipGal1="Cantor's roundleaf bat" HLloxAfr4="African savanna elephant" HLcynBra1="lesser short-nosed fruit bat" HLeonSpe1="lesser dawn bat" HLcryFer2=fossa HLgraMur1="woodland dormouse" HLmyrTri1="giant anteater" HLrouLes1="Leschenault's rousette" HLrouAeg4="Egyptian rousette" HLrouMad1="Madagascan rousette" HLvulVul1="red fox" HLvulLag1="Arctic fox" HLlycPic3="African hunting dog" HLtamTet1="southern tamandua" HLcanLupDin1=dingo HLpotFla1=kinkajou HLhydGig1="Steller's sea cow" HLmegLyr2="Indian false vampire" HLlycPic2="African hunting dog" HLailFul2="lesser panda" HLmolMol2="Pallas's mastiff bat" HLcroCro1="spotted hyena" HLmacSob1="long-tongued fruit bat" HLhyaHya1="striped hyena" HLlepTim1="Mountain hare" HLminSch1="Schreibers' long-fingered bat" HLparHer1="Asian palm civet" HLminNat1="Miniopterus schreibersii natalensis" HLlepAme1="snowshoe hare" HLcraTho1="hog-nosed bat" HLcatWag1="Chacoan peccary" HLmorBla1="Antillean ghost-faced bat" HLoryCunCun4="European rabbit" HLoryCun3=rabbit HLsylBac1="brush rabbit" HLnasNar1="White-nosed coati" HLhysCri1="crested porcupine" HLereDor1="North American porcupine" HLcoePre1="Brazilian porcupine" HLmarZib1=sable HLsolPar1="Hispaniolan solenodon" HLgulGul1=wolverine HLproLot1=raccoon HLbasSum1=Cacomistle HLspiGra1="western spotted skunk" HLtaxTax1="North American badger" HLmelCap1=ratel HLmusAve1="hazel dormouse" HLsurSur2=meerkat HLsurSur1=meerkat HLmunMug1="banded mongoose" HLhelPar1="dwarf mongoose" HLscaAqu1="eastern mole" HLlonCan1="Northern American river otter" HLpteBra2="giant otter" HLpteBra1="giant otter" HLlutLut1="Eurasian river otter" HLmyoMyo6="greater mouse-eared bat" HLdesRot2="common vampire bat" HLtalOcc1="Iberian mole" HLgirCam1=giraffe HLokaJoh2=okapi HLmacCal1="California big-eared bat" HLmusErm1=ermine HLmyoSep1="Northern long-eared myotis" HLneoVis1="American mink" HLgirCam2=giraffe HLgirTip1="Masai giraffe" HLmyoLuc1="little brown bat" HLmusPut1="European polecat" HLmusFur2="domestic ferret" HLlepYer1="Lesser long-nosed bat" HLsynCaf1="African buffalo" HLbubBub2="water buffalo" HLmosBer1="Chinese forest musk deer" HLmosMos1="Siberian musk deer" HLmosChr1="alpine musk deer" HLcerHanYar1="Yarkand deer" HLmicHir1="Schizostoma hirsutum" HLbosInd2="zebu cattle" HLbosGau1=gaur HLanoCau1="tailed tailless bat" HLbosFro1=gayal HLbosMut2="wild yak" HLprzAlb1="white-lipped deer" HLmurAurFea1="Murina feae" HLnocLep1="greater bulldog bat" HLhipEqu1="roan antelope" HLcepHar1="Harvey's duiker" HLhipNig1="sable antelope" HLbosGru1="domestic yak" HLoryDam1="scimitar-horned oryx" HLsylGri1="bush duiker" HLphiMax1="Maxwell's duiker" HLoryGaz1=gemsbok HLtraStr1="greater kudu" HLantAme1=pronghorn HLmunRee1="Reeves' muntjac" HLmunCri1="black muntjac" HLcerEla1="Central European red deer" HLtraImb1="lesser kudu" HLconTau2="brindled gnu" HLtraScr1=bushbuck HLkobEll1=waterbuck HLmunMun1=muntjak HLammLer1=aoudad HLdamLun1=topi HLoviCan1="bighorn sheep" HLkobLecLec1=lechwe HLcapPyg1="Eastern roe deer" HLcapHir2=goat HLcapAeg1="wild goat" HLalcAlc1="Eurasian elk" HLbeaHun1="Cobus hunteri" HLaepMel1=impala HLodoHem1="mule deer" HLredRed1="Bohar reedbuck" HLfukDam2="Damara mole-rat" HLcapSib1="Siberian ibex" HLodoVir3="white-tailed deer" HLranTarGra2="porcupine caribou" HLranTar1=reindeer HLoreOre1=klipspringer HLhydIne1="Chinese water deer" HLoviCan2="bighorn sheep" HLoviNivLyd1="snow sheep" HLneoMos1=suni HLodoVir2="white-tailed deer" HLodoVir1="white-tailed deer" HLhemHyl1="Nilgiri tahr" HLoviOri1="Asiatic mouflon" HLoviAri5=sheep HLneoPyg1="royal antelope" HLnanGra1="Grant's gazelle" HLproPrz1="Przewalski's gazelle" HLrapCam1=steenbok HLeudTho1="Thomson's gazelle" HLantMar1=springbok HLdasPun1="punctate agouti" HLcteGun1="northern gundi" HLlitWal1=gerenuk HLmadKir1="Kirk's dik-dik" HLcarPer3="Seba's short-tailed bat" HLaxiPor1="Hog deer" HLphyDis3="pale spear-nosed bat" HLtonSau1="stripe-headed round-eared bat" HLtraJav1="Java mouse-deer" HLartJam1="Jamaican fruit-eating bat" HLartJam2="Jamaican fruit-eating bat" HLhetBru1="yellow-spotted hyrax" HLproCap3="Cape rock hyrax" HLuroGra1="gracile shrew mole" HLtraKan1="lesser mouse-deer" HLstuHon1="Honduran yellow-shouldered bat" HLoreAme1="mountain goat" HLallBul1="Gobi jerboa" HLelaDav1="Pere David's deer" HLsaiTat1="saiga antelope" HLaeoCin1="hoary bat" HLdipSte1="Stephens's kangaroo rat" HLtolMat1="Southern three-banded armadillo" HLantPal1="pallid bat" HLrhiPru1="hoary bamboo rat" HLnycHum2="evening bat" HLoviAmm1=argali HLcapIbe1="Alpine ibex" HLdinBra1=pacarana HLzapHud1="meadow jumping mouse" HLdolPat1="Patagonian cavy" HLlasBor1="red bat" HLpipKuh2="Kuhl's pipistrelle" HLperLonPac1="Pacific pocket mouse" HLhydHyd1=capybara HLpipPip1="common pipistrelle" HLpipPip2="common pipistrelle" HLpetTyp1=dassie-rat HLcavTsc1="Montane guinea pig" HLthrSwi1="Greater cane rat" HLcriGam1="Gambian giant pouched rat" HLneoLep1="desert woodrat" HLcteSoc1="social tuco-tuco" HLmyoCoy1=nutria HLperNas1="northern rock mouse" HLcriGri3="Chinese hamster" HLperCri1="Hesperomys crinitus" HLondZib1=muskrat HLperCal2="Peromyscus californicus subsp. insignis" HLperEre1="cactus mouse" HLonyTor1="southern grasshopper mouse" HLperLeu1="white-footed mouse" HLellTal1="Northern mole vole" HLperPol1="oldfield mouse" HLperManBai2="prairie deer mouse" HLsigHis1="hispid cotton rat" HLellLut1="Transcaucasian mole vole" HLmyoGla2="Bank vole" HLarvAmp1="Eurasian water vole" HLpsaObe1="fat sand rat" HLacoRus1="golden spiny mouse" HLgraSur1="African woodland thicket rat" HLarvNil1="African grass rat" HLmicOec1="root vole" HLmicTal1="Talazac's shrew tenrec" HLmicAgr2="short-tailed field vole" HLmicFor1="reed vole" HLacoCah1="Egyptian spiny mouse" HLmicArv1="Common vole" HLrhoOpi1="great gerbil" HLmasCou1="southern multimammate mouse" HLmerUng1="Mongolian gerbil" HLratRat7="black rat" HLratNor7="Norway rat" HLmusPah1="shrew mouse" HLmusCar1="Ryukyu mouse" HLmusSpi1="steppe mouse" HLmusSpr1="western wild mouse" HLapoSyl1="European woodmouse" HLvomUrs1="common wombat" HLphaCin1=koala HLgraAgi1="Agile Gracile Mouse Opossum" HLtriVul1="common brushtail" HLdidVir1="North American opossum" HLphaGym1="ground cuscus" HLgymLea1="Leadbeater's possum" HLthyCyn1="Tasmanian wolf" HLpseCup1="coppery ringtail possum" HLmacGig1="eastern gray kangaroo" HLpseCor1="golden ringtail possum" HLmacFul1="western gray kangaroo" HLnotEug3="tammar wallaby" HLospRuf1="red kangaroo" HLpseOcc1="Western ringtail oppossum" HLantFla1="yellow-footed antechinus" HLsarHar2="Tasmanian devil" HLornAna3=platypus HLtacAcu1="Australian echidna"\ subGroups view=align\ summary https://hgdownload.soe.ucsc.edu/goldenPath/hg38/multiz470way/multiz470waySummary.bb\ track multiz470way\ treeImage phylo/hg38_470way.png\ type bigMaf\ viewUi on\ nmdDetectiveB_ptc NMDetective-B PTC bigWig NMDetective-B: Decision tree NMD efficiency for first out-of-frame PTC 0 5 0 153 102 127 204 178 0 0 0Description
\\ The NMDetective tracks display genome-wide predictions of nonsense-mediated mRNA\ decay (NMD) efficiency from\ Lindeboom et al. 2016.\ NMDetective scores predict whether a premature termination codon (PTC) at a given position\ will trigger NMD and mRNA degradation, or whether the transcript will escape NMD and\ potentially produce a truncated protein.\
\ \\ Scores range from approximately −1 to +1. Positive values indicate that a PTC at\ that position is predicted to trigger NMD (the mRNA is degraded). Negative values indicate\ that the PTC is predicted to escape NMD (the truncated mRNA may be translated into an\ aberrant protein). Values near zero indicate intermediate or uncertain NMD efficiency.\
\ \Subtracks
\| Track | Description |
|---|---|
| NMDetective-A | \Random forest model predicting NMD efficiency for all possible PTCs introduced\ by single-nucleotide variants. Explains ~71% of systematic variance in NMD\ efficiency. |
| NMDetective-B | \Simplified decision tree model for all possible PTCs. Slightly lower accuracy\ (~68% variance explained) but more interpretable, making it suitable for\ clinical applications. |
| NMDetective-A PTC | \Random forest model predicting NMD efficiency specifically for the first\ out-of-frame PTC introduced by frameshifting indel mutations. |
| NMDetective-B PTC | \Decision tree model for the first out-of-frame PTC from frameshifting\ indels. |
Display Conventions and Configuration
\\ Each subtrack is displayed as a signal (bigWig) track. By default, the vertical axis\ ranges from −1 to +1. Regions with positive values (predicted NMD-triggering) are\ shown above the baseline; regions with negative values (predicted NMD escape) are shown\ below.\
\- \
- Blue tracks (NMDetective-A and -B): predictions\ for all possible PTCs from single-nucleotide nonsense variants. \
- Green tracks (NMDetective-A PTC and -B PTC):\ predictions for the first out-of-frame PTC from frameshifting indels. \
Methods
\\ The NMDetective models were trained on somatic nonsense mutation data from 9,769 cancer\ patients and validated with frameshift mutations and germline variants\ (Lindeboom et al. 2019).\ The models incorporate the following features to predict NMD efficiency:\
\- \
- Whether the PTC falls in the last exon \
- Distance to the last 50 nt of the penultimate exon (the EJC-based “50 bp rule”) \
- Distance from the coding start (start-proximal NMD insensitivity) \
- Exon length \
- mRNA half-life \
- Distance to the downstream exon-junction complex \
- Distance to the wild-type stop codon \
\ NMDetective-A (random forest regression) captures non-linear interactions among\ these features and achieves the highest predictive accuracy.\ NMDetective-B (decision tree) applies a simpler rule-based classification that\ is more transparent, with a modest reduction in accuracy.\
\ \\ The predictions were generated for every possible PTC-introducing single-nucleotide\ variant and for the first out-of-frame PTC from every possible single-nucleotide\ frameshifting indel across all human protein-coding transcripts. The original bedGraph\ custom track files were downloaded from the\ NMDetective Figshare page\ resource and converted to bigWig format at UCSC.\
\ \Data Access
\\ The data underlying these tracks can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Rik Lindeboom for providing custom tracks and the original NMDetective data\ on Figshare.\
\ \References
\ \\
Lindeboom RG, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\
Lindeboom RGH, Vermeulen M, Lehner B, Supek F.\
\
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer\
immunotherapy.\
Nat Genet. 2019 Nov;51(11):1645-1651.\
PMID: 31659324; PMC:
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from GENCODE Version 22 (Ensembl 79)\ parent wgEncodeGencodeV22ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV22\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV23 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 23 (Ensembl 81) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 23 (Ensembl 81)\ parent wgEncodeGencodeV23ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV23\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV24 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 24 (Ensembl 83) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 24 (Ensembl 83)\ parent wgEncodeGencodeV24ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV24\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV25 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 25 (Ensembl 85) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 25 (Ensembl 85)\ parent wgEncodeGencodeV25ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV25\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV26 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 26 (Ensembl 88) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 26 (Ensembl 88)\ parent wgEncodeGencodeV26ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV26\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV27 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 27 (Ensembl 90) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 27 (Ensembl 90)\ parent wgEncodeGencodeV27ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV27\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV28 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 28 (Ensembl 92) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 28 (Ensembl 92)\ parent wgEncodeGencodeV28ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV28\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV29 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 29 (Ensembl 94) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 29 (Ensembl 94)\ parent wgEncodeGencodeV29ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV29\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV30 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 30 (Ensembl 96) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 30 (Ensembl 96)\ parent wgEncodeGencodeV30ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV30\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV31 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 31 (Ensembl 97) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 31 (Ensembl 97)\ parent wgEncodeGencodeV31ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV31\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV32 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 32 (Ensembl 98) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 32 (Ensembl 98)\ parent wgEncodeGencodeV32ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV32\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV33 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 33 (Ensembl 99) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 33 (Ensembl 99)\ parent wgEncodeGencodeV33ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV33\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV34 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 34 (Ensembl 100) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 34 (Ensembl 100)\ parent wgEncodeGencodeV34ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV34\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV35 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 35 (Ensembl 101) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 35 (Ensembl 101)\ parent wgEncodeGencodeV35ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV35\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV36 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 36 (Ensembl 102) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 36 (Ensembl 102)\ parent wgEncodeGencodeV36ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV36\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV37 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 37 (Ensembl 103) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 37 (Ensembl 103)\ parent wgEncodeGencodeV37ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV37\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV38 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 38 (Ensembl 104) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 38 (Ensembl 104)\ parent wgEncodeGencodeV38ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV38\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV39 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 39 (Ensembl 105) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 39 (Ensembl 105)\ parent wgEncodeGencodeV39ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV39\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV40 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 40 (Ensembl 106) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 40 (Ensembl 106)\ parent wgEncodeGencodeV40ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV40\ trackHandler wgEncodeGencode\ type genePred\ wgEncodeGencodePolyaV41 PolyA genePred PolyA Transcript Annotation Set from GENCODE Version 41 (Ensembl 107) 0 5 0 0 0 127 127 127 0 0 0 genes 1 color 0,0,0\ longLabel PolyA Transcript Annotation Set from GENCODE Version 41 (Ensembl 107)\ parent wgEncodeGencodeV41ViewPolya off\ priority 5\ shortLabel PolyA\ subGroups view=cPolya name=zPolyA\ track wgEncodeGencodePolyaV41\ trackHandler wgEncodeGencode\ type genePred\ promoterAiOverlaps PromoterAI overlaps bigBed 9 + PromoterAI: Positions with >1 score due to overlapping transcripts 1 5 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/_promoterAi/overlaps.bb\ filter.scoreDiff 0.01\ filterByRange.scoreDiff on\ filterLabel.scoreDiff Minimum score difference across transcripts\ filterLimits.scoreDiff 0:2\ itemRgb on\ longLabel PromoterAI: Positions with >1 score due to overlapping transcripts\ maxItems 50000\ maxWindowToDraw 10000000\ mouseOverField _mouseOver\ parent promoterAi on\ scoreFilter 0\ scoreFilterLimits 0:1000\ scoreLabel Absolute PromoterAI score * 1000\ shortLabel PromoterAI overlaps\ track promoterAiOverlaps\ type bigBed 9 +\ visibility dense\ recombDnm Recomb. deCODE Dmn bigBed 4 + Recombination rate: De-novo mutations found in deCODE samples 0 5 0 130 0 127 192 127 0 0 0
Description
\\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\
\ \This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\
\ \Display Conventions and Configuration
\\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\
\ \\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\
\ \Methods
\\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\
\ \The 1000 Genomes genetic map is based on the
As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\
\ \References
\\
1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\
Hurles ME, McVean GA.\
\
A map of human genome variation from population-scale sequencing.\
Nature. 2010 Oct 28;467(7319):1061-73.\
PMID: 20981092; PMC:
\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\
\ map 1 bigDataUrl /gbdb/hg38/recombRate/recombDenovo.bb\ html recombRate2.html\ longLabel Recombination rate: De-novo mutations found in deCODE samples\ parent recombRate2\ priority 5\ shortLabel Recomb. deCODE Dmn\ track recombDnm\ type bigBed 4 +\ visibility hide\ ncbiRefSeqPsl RefSeq Alignments psl RefSeq Alignments of RNAs 1 5 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault diffCodons\ baseColorUseCds table ncbiRefSeqCds\ baseColorUseSequence extFile seqNcbiRefSeq extNcbiRefSeq\ color 0,0,0\ idXref ncbiRefSeqLink mrnaAcc name\ indelDoubleInsert on\ indelQueryInsert on\ longLabel RefSeq Alignments of RNAs\ parent refSeqComposite off\ pepTable ncbiRefSeqPepTable\ priority 5\ pslSequence no\ shortLabel RefSeq Alignments\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track ncbiRefSeqPsl\ type psl\ revelOverlaps REVEL overlaps bigBed 9 + REVEL: Positions with >1 score due to overlapping transcripts (mouseover for details) 1 5 150 80 200 202 167 227 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/revel/overlap.bb\ extraTableFields _jsonTable|Title\ longLabel REVEL: Positions with >1 score due to overlapping transcripts (mouseover for details)\ mouseOverField _mouseOver\ parent revel on\ shortLabel REVEL overlaps\ track revelOverlaps\ type bigBed 9 +\ visibility dense\ gnomad320XPercentage Sample % > 20X bigWig gnomAD Percentage of Genome Samples with at least 20X Coverage v3.0.1 2 5 135 0 120 195 127 187 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_20.bw\ color 135,0,120\ longLabel gnomAD Percentage of Genome Samples with at least 20X Coverage v3.0.1\ parent gnomad3Coverage off\ priority 5\ shortLabel Sample % > 20X\ track gnomad320XPercentage\ viewLimits 0:1\ gnomad4Exome20XPercentage Sample % > 20X bigWig gnomAD Percentage of Exome Samples with at least 20X Coverage v4.0 2 5 135 0 120 195 127 187 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_20.bw\ color 135,0,120\ longLabel gnomAD Percentage of Exome Samples with at least 20X Coverage v4.0\ parent gnomad4ExomeCoverage off\ priority 5\ shortLabel Sample % > 20X\ track gnomad4Exome20XPercentage\ viewLimits 0:1\ genomicSuperDups Segmental Dups bed 6 + Duplications of >1000 Bases of Non-RepeatMasked Sequence 0 5 0 0 0 127 127 127 0 0 0Description
\\ This track shows regions detected as putative genomic duplications within the\ golden path. The following display conventions are used to distinguish\ levels of similarity:\
- \
- \ Light to dark gray: 90 - 98% similarity\
- \ Light to dark yellow: 98 - 99% similarity\
- \ Light to dark orange: greater than 99% similarity \
- \ Red: duplications of greater than 98% similarity that lack sufficient \ Segmental Duplication Database evidence (most likely missed overlaps) \
Methods
\\ Segmental duplications play an important role in both genomic disease \ and gene evolution. This track displays an analysis of the global \ organization of these long-range segments of identity in genomic sequence.\
\ \Large recent duplications (>= 1 kb and >= 90% identity) were detected\ by identifying high-copy repeats, removing these repeats from the genomic \ sequence ("fuguization") and searching all sequence for similarity. The\ repeats were then reinserted into the pairwise alignments, the ends of \ alignments trimmed, and global alignments were generated.\ For a full description of the "fuguization" detection method, see Bailey\ et al., 2001. This method has become\ known as WGAC (whole-genome assembly comparison); for example, see Bailey \ et al., 2002.\ \
Credits
\\ These data were provided by Ginger Cheng, Xinwei She,\ Archana Raja,\ Tin Louie and\ Evan Eichler \ at the University of Washington.
\ \References
\\ Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, \ Myers EW, Li PW, Eichler EE.\ Recent segmental duplications in the human genome.\ Science. 2002 Aug 9;297(5583):1003-7.\ PMID: 12169732\
\ \\
Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.\
Segmental duplications: organization and impact within the \
current human genome project assembly.\
Genome Res. 2001 Jun;11(6):1005-17.\
PMID: 11381028; PMC:
Position: $position
UniProt status: $status\ parent uniprot\ priority 5\ shortLabel Transmembrane\ track unipLocTransMemb\ type bigBed 12 +\ visibility dense\ ucneChicken UCNE Chicken bigBed 4 + UCNEBase: 4351 Chicken-conserved elements 0 5 0 0 0 127 127 127 0 0 0 https://epd.expasy.org/ucnebase/view.php?data=ucne&entry=$$ compGeno 1 bigDataUrl /gbdb/hg38/unusualcons/chicken.bb\ longLabel UCNEBase: 4351 Chicken-conserved elements\ parent unusualcons on\ shortLabel UCNE Chicken\ track ucneChicken\ type bigBed 4 +\ url https://epd.expasy.org/ucnebase/view.php?data=ucne&entry=$$\ umap24Quantitative Umap M24 bigWig 0.041667 1.0 Multi-read mappability with 24-mers 2 5 80 20 240 167 137 247 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ color 80,20,240\ longLabel Multi-read mappability with 24-mers\ parent umapBigWig on\ priority 5\ shortLabel Umap M24\ subGroups view=MR\ track umap24Quantitative\ type bigWig 0.041667 1.0\ iscaLikelyBenign Uncert Ben gvf ClinGen CNVs: Uncertain: Likely Benign 3 5 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Uncertain: Likely Benign\ parent iscaViewDetail off\ shortLabel Uncert Ben\ subGroups view=cnv class=likB level=sub\ track iscaLikelyBenign\ chainMm10 Mouse Chain chain mm10 Mouse (Dec. 2011 (GRCm38/mm10)) Chained Alignments 3 6 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Mouse (Dec. 2011 (GRCm38/mm10)) Chained Alignments\ otherDb mm10\ parent placentalChainNetViewchain off\ shortLabel Mouse Chain\ subGroups view=chain species=s012a clade=c00\ track chainMm10\ type chain mm10\ netGalGal6 Chicken Net netAlign galGal6 chainGalGal6 Chicken (Mar. 2018 (GRCg6a/galGal6)) Alignment Net 1 6 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Chicken (Mar. 2018 (GRCg6a/galGal6)) Alignment Net\ otherDb galGal6\ parent vertebrateChainNetViewnet on\ shortLabel Chicken Net\ subGroups view=net species=s008a clade=c01\ track netGalGal6\ type netAlign galGal6 chainGalGal6\ netGorGor6 Gorilla Net netAlign gorGor6 chainGorGor6 Gorilla (Aug. 2019 (Kamilah_GGO_v0/gorGor6)) Alignment Net 1 6 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Gorilla (Aug. 2019 (Kamilah_GGO_v0/gorGor6)) Alignment Net\ otherDb gorGor6\ parent primateChainNetViewnet off\ shortLabel Gorilla Net\ subGroups view=net species=s009a clade=c00\ track netGorGor6\ type netAlign gorGor6 chainGorGor6\ encTfChipPkENCFF766YPH A549 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in A549 from ENCODE 3 (ENCFF766YPH) 0 6 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in A549 from ENCODE 3 (ENCFF766YPH)\ parent encTfChipPk off\ shortLabel A549 CHD4\ subGroups cellType=A549 factor=CHD4\ track encTfChipPkENCFF766YPH\ cloneEndABC16 ABC16 bed 12 Agencourt fosmid library 16 0 6 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 16\ parent cloneEndSuper off\ priority 6\ shortLabel ABC16\ subGroups source=agencourt\ track cloneEndABC16\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_rev AorticSmsToFgf2_00hr15minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse 0 6 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_rev AorticSmsToFgf2_00hr15minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse 1 6 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep1%20%28LK4%29.CNhs13340.12643-134G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep1 (LK4)_CNhs13340_12643-134G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12643-134G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep1LK4_CNhs13340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12643-134G6\ urlLabel FANTOM5 Details:\ gtexCovArteryTibial Artery Tibia bigWig Artery Tibial 0 6 255 0 0 255 127 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-XPT6-2226-SM-4B66R.Artery_Tibial.RNAseq.bw\ color 255,0,0\ longLabel Artery Tibial\ parent gtexCov\ shortLabel Artery Tibia\ track gtexCovArteryTibial\ bismap36Neg Bismap S36 - bigBed 6 Single-read mappability with 36-mers after bisulfite conversion (reverse strand) 0 6 240 70 80 247 162 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k36.G2A-Converted.bb\ color 240,70,80\ longLabel Single-read mappability with 36-mers after bisulfite conversion (reverse strand)\ parent bismapBigBed off\ priority 6\ shortLabel Bismap S36 -\ subGroups view=SR\ track bismap36Neg\ visibility hide\ wgEncodeReg4TxnBloodMinus Blood - bigWig Avg. - strand total RNA-seq level of 68 blood experiments (tissues and primary cells only) 0 6 254 75 173 254 165 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpBloodMinus.bw\ color 254,75,173\ longLabel Avg. - strand total RNA-seq level of 68 blood experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn\ priority 6\ shortLabel Blood -\ track wgEncodeReg4TxnBloodMinus\ type bigWig\ wbbc China WBBC 4.5k WGS vcfTabix SNV Frequencies: Westlake BioBank for Chinese - 4,480 WGS, 4 regional Han groups 0 6 0 0 0 127 127 127 0 0 0
Description
\\ This track shows allele frequencies for 78.6 million variants from\ 4,480 whole-genome-sequenced Chinese individuals released by the\ Westlake BioBank for Chinese\ (WBBC) pilot project. The WBBC is a population study of about 35,000\ Chinese volunteers across 31 provinces; about 15,000 have been deeply\ phenotyped and a subset have been whole-genome sequenced.\ The frequencies are also broken down into four Han Chinese regional\ groups (North, Central, South, Lingnan) defined by recruitment province\ in the WBBC paper.\
\ \\ The pilot project has been folded into the larger\ China Precision BioBank\ (CPBB) initiative, which is collecting up to 100,000 samples\ nationwide. The variant frequencies on this track are from the original\ WBBC Phase I release (v20210103) and are unchanged by the rebranding.\
\ \Display
\\ The track uses the standard UCSC VCF display. Hovering a variant shows\ the cohort allele frequency, the four regional frequencies, sequencing\ depth, GATK VQSR log-odds score, and the per-genotype hom-ref / het /\ hom-alt sample counts as reported by WBBC.\
\ \Methods
\\ The WBBC pilot whole-genome-sequenced 4,535 individuals at a mean depth\ of 13.9x on Illumina HiSeq X10 platforms, after dropping samples that\ failed standard QC. Reads were aligned to GRCh38 with BWA-MEM, variants\ were jointly called with GATK 4.0 HaplotypeCaller, and the callset was\ hard-filtered with VQSR. The 4,480 unrelated samples released for download\ were stratified into four Han Chinese regional groups (North, Central,\ South and Lingnan, which together cover 27 of the administrative divisions\ the pilot reached). Allele counts and frequencies are reported overall\ and per region. See Cong et al. 2022 (in References below) for\ full sample-selection and pipeline details.\
\\ The per-chromosome WGS sites VCFs (chr1-22) were downloaded from\ https://wbbc.westlake.edu.cn/\ (URL pattern: WBBC.chr<N>.GRCh38.vcf.gz). We concatenated\ the 22 files with bcftools concat, re-headered the result to\ add the standard hg38 contig lines and proper INFO definitions, then\ dropped variants with cohort allele count zero (multi-allelic splits\ that no WBBC sample carries; ~1.9% of rows), and sorted, bgzipped and\ tabix-indexed the result. No coordinate liftover was\ needed: the upstream files are already on GRCh38 with chr-prefixed\ chromosomes. The pipeline is recorded in the\ makeDoc\ file of the track.\
\ \Caveats
\\ Only autosomes (chr1-22) are present; chrX/Y/M are not in the WBBC\ download. Variants reported as AC=0 in the WBBC release (about 1.9 %\ of rows, mostly multi-allelic split sites that no WBBC individual\ carries) have been removed from this track.\
\ \Data Access
\\ The variant frequencies can be explored interactively using the\ Table Browser or the\ Data Integrator, and exported to\ spreadsheet or tab-separated tables. From scripts, the data can be\ accessed via our REST\ API with track=wbbc.\
\\ The VCF file is also available from\ our\ download server as wbbc.vcf.gz. Individual regions can be\ extracted with tabix, for example\ tabix http://hgdownload.soe.ucsc.edu/gbdb/hg38/varFreqs/wbbc/wbbc.vcf.gz chr21:1-100000000.\ The original per-chromosome WBBC release is distributed at\ https://wbbc.westlake.edu.cn/.\
\ \Credits
\\ Thanks to the WBBC participants and to the Westlake University team\ (Pei-Kuan Cong, Hou-Feng Zheng and colleagues) for making the pilot\ sites-only VCFs publicly available.\
\ \References
\ \ \\
Cong PK, Bai WY, Li JC, Yang MY, Khederzadeh S, Gai SR, Li N, Liu YH, Yu SH, Zhao WW et al.\
\
Genomic analyses of 10,376 individuals in the Westlake BioBank for Chinese (WBBC) pilot project.\
Nat Commun. 2022 May 26;13(1):2939.\
PMID: 35618720; PMC:
Position: $position
UniProt status: $status\ parent uniprot\ priority 6\ shortLabel Cytoplasmic\ track unipLocCytopl\ type bigBed 12 +\ visibility dense\ snpArrayCytoSnp850k CytoSNP 850k bigBed 6 + Illumina 850k CytoSNP Array 3 6 0 0 0 127 127 127 0 0 0
Description
\Agilent Arrays
\\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\
\Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\
\ \\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\
\ \Illumina 450k and 850k Methylation Arrays
\\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks, not the probe locations themselves. Contact us\ or Illumina if you need the probe locations directly. More information about\ the arrays can be found on the\ Infinium MethylationEPIC Kit website.\
\ Note: The 450k track on hg38 contains 128,989 regions representing the target regions, not the probes\ themselves.
\ \Illumina CytoSNP 850K Probe Array
\\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \
\ \Affymetrix Cytoscan HD GeneChip Array
\\ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\
\ \Bionano DLE-1 CTTAAG sites
\ \\ Bionano Laboratories provides access to Optical Genome Mapping (OGM) data for projects across a variety of\ applications for researchers, clinicians, and pharmaceutical companies.
\This track shows the CTTAAG sites used by the \ Bionano Optical Genome Mapping system,\ an assay to detect structural variants.\
\ \Display Conventions and Configuration
\ \\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \ \Methods
\\ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.
\\ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.
\\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\
\\ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\
\\ The Bionano track was created by receiving the BED files from\ \ apang@bionano.\ com\ \ and converted to bigBed files using the bedToBigBed tool.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the Agilent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.
\\ Thanks to Andy Pang from Bionano Genomics for providing the BED data file.
\ varRep 1 bigDataUrl /gbdb/hg38/bbi/cytoSnp/cytoSnp850k.bb\ colorByStrand 255,0,0 0,0,255\ html genotypeArrays\ longLabel Illumina 850k CytoSNP Array\ noScoreFilter on\ parent genotypeArrays on\ priority 6\ shortLabel CytoSNP 850k\ track snpArrayCytoSnp850k\ type bigBed 6 +\ urls rsID="https://www.ncbi.nlm.nih.gov/snp/?term=$$"\ visibility pack\ dbVar_common_byrska_bishop dbVar Curated Byrska-Bishop SVs bigBed 9 + . NCBI dbVar Curated Common SVs: all populations from Byrska-Bishop 3 6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_byrska_bishop.bb\ longLabel NCBI dbVar Curated Common SVs: all populations from Byrska-Bishop\ parent dbVar_common off\ priority 6\ shortLabel dbVar Curated Byrska-Bishop SVs\ track dbVar_common_byrska_bishop\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ wgEncodeReg4MarkH3k27acEmbryo Embryo bigWig Avg. H3K27ac level of 4 embryo experiments (tissues and primary cells only) 2 6 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEmbryoH3K27ac.bw\ color 118,158,101\ longLabel Avg. H3K27ac level of 4 embryo experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k27ac off\ priority 6\ shortLabel Embryo\ track wgEncodeReg4MarkH3k27acEmbryo\ type bigWig\ wgEncodeReg4MarkH3k4me3Embryo Embryo bigWig Avg. H3K4me3 level of 2 embryo experiments (tissues and primary cells only) 0 6 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEmbryoH3K4me3.bw\ color 118,158,101\ longLabel Avg. H3K4me3 level of 2 embryo experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 6\ shortLabel Embryo\ track wgEncodeReg4MarkH3k4me3Embryo\ type bigWig\ ENCFF414OGC_ENCFF806YEZ_ENCFF849TDM_ENCFF736UDR ENCFF414OGC_ENCFF806YEZ_ENCFF849TDM_ENCFF736UDR bigBed 9 + 5 K562: (1) cCREs 4 6 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF414OGC_ENCFF806YEZ_ENCFF849TDM_ENCFF736UDR.bb\ longLabel K562: (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 58\ shortLabel ENCFF414OGC_ENCFF806YEZ_ENCFF849TDM_ENCFF736UDR\ subGroups organ=blood view=cCREs_view simpleBiosample=K562 biosampleType=cell_line donor=ENCDO000AAD dataType=typeCcres\ track ENCFF414OGC_ENCFF806YEZ_ENCFF849TDM_ENCFF736UDR\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF972JBP ENCSR000AAC - strand bigWig Smooth muscle cell of bladder female adult (53 years) and male adult (62 years) - strand total RNA-seq signal 2 6 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/429eced2-92ec-440b-a9b3-936ce139faee/ENCFF972JBP.bigWig\ color 130,141,158\ longLabel Smooth muscle cell of bladder female adult (53 years) and male adult (62 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAC - strand\ track wgEncodeReg4RnaSeq_ENCFF972JBP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF734CUT ENCSR000AKB Signal bigWig GM12878 CTCF ENCSR000AKB signal 2 6 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/01/a42c46dc-c33f-4906-8469-ba93e2cf30d3/ENCFF734CUT.bigWig\ color 254,75,173\ longLabel GM12878 CTCF ENCSR000AKB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AKB Signal\ track wgEncodeReg4TfChip_ENCFF734CUT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF849TDM ENCSR000AKP Signal bigWig K562 H3K27ac signal 2 6 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/f9fe937a-d0b5-4a66-9531-84ec1edf4790/ENCFF849TDM.bigWig\ color 181,145,0\ longLabel K562 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AKP Signal\ track wgEncodeReg4Epigenetics_ENCFF849TDM\ type bigWig\ visibility full\ knownGeneV39 GENCODE V39 bigGenePred GENCODE V39 0 6 0 0 0 127 127 127 0 0 0
Description
\\ The GENCODE Genes track (version 39, December 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The following table provides statistics for the v39 release derived from the GTF file that contains\ annotations only on the main chromosomes. More information on how they were generated can be found\ in the GENCODE site.
\ \\
\ \\
\ GENCODE v39 Release Stats \ Genes Observed Transcripts Observed \ Protein-coding genes 19,982 Protein-coding transcripts 87,151 \ Long non-coding RNA genes 18,811 - full length protein-coding 61,516 \ Small non-coding RNA genes 7,567 - partial length protein-coding 25,635 \ Pseudogenes 14,763 Nonsense mediated decay transcripts 19,762 \ Immunoglobulin/T-cell receptor gene segments 409 Long non-coding RNA loci transcripts 53,009
\
\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding\
- non-coding\
- pseudogene\
- problem\
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \Methods
\\
The GENCODE v39 track was built from the GENCODE downloads file \
gencode.v39.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources \
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney.
\ \References
\\
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa\
A, Searle S et al.\
\
GENCODE: the reference human genome annotation for The ENCODE Project.\
Genome Res. 2012 Sep;22(9):1760-74.\
PMID: 22955987; PMC:
\
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R,\
Swarbreck D et al.\
\
GENCODE: producing a reference annotation for ENCODE.\
Genome Biol. 2006;7 Suppl 1:S4.1-9.\
PMID: 16925838; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV39.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV39\ group genes\ html knownGeneV39\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V39\ maxItems 50000\ parent knownGeneArchive\ priority 6\ searchIndex name\ shortLabel GENCODE V39\ track knownGeneV39\ type bigGenePred\ visibility hide\ geneHancerGenes GH genes TSS bigBed 9 GH genes TSS 3 6 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 bigDataUrl /gbdb/hg38/geneHancer/geneHancerGenesTssAll.hg38.bb\ longLabel GH genes TSS\ parent ghGeneTss off\ shortLabel GH genes TSS\ subGroups set=b_ALL view=b_TSS\ track geneHancerGenes\ type bigBed 9\ urlLabel In GeneCards:\ wgEncodeReg4MarkCtcfHeart Heart bigWig Avg. CTCF level of 24 heart experiments (tissues and primary cells only) 0 6 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpHeartCTCF.bw\ color 116,50,165\ longLabel Avg. CTCF level of 24 heart experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkCtcf off\ priority 6\ shortLabel Heart\ track wgEncodeReg4MarkCtcfHeart\ type bigWig\ netHprcGCA_018467015v1 HG02486.mat netAlign GCA_018467015.1 chainHprcGCA_018467015v1 HG02486.mat HG02486.pri.mat.f1_v2 (May 2021 GCA_018467015.1_HG02486.pri.mat.f1_v2) HPRC project computed Chain Nets 1 6 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02486.mat HG02486.pri.mat.f1_v2 (May 2021 GCA_018467015.1_HG02486.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018467015.1\ parent hprcChainNetViewnet off\ priority 22\ shortLabel HG02486.mat\ subGroups view=net sample=s022 population=afr subpop=acb hap=mat\ track netHprcGCA_018467015v1\ type netAlign GCA_018467015.1 chainHprcGCA_018467015v1\ hr_na12248Vcf HR_NA12248 Variants vcfTabix HR_NA12248 Variants 0 6 0 0 0 127 127 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/problematic/highRepro/HR_NA12248.sort.vcf.gz\ longLabel HR_NA12248 Variants\ parent highReproVcfs\ shortLabel HR_NA12248 Variants\ subGroups view=vcfs\ track hr_na12248Vcf\ type vcfTabix\ wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled HUVEC bigWig 0 65535 Transcription of HUVEC cells from ENCODE 0 6 128 199 255 191 227 255 0 0 0 regulation 1 color 128,199,255\ longLabel Transcription of HUVEC cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 6\ shortLabel HUVEC\ track wgEncodeRegTxnCaltechRnaSeqHuvecR2x75Il200SigPooled\ type bigWig 0 65535\ KAPA_HyperExome_hg38_primary_targets KAPA Hyper T bigBed Roche - KAPA HyperExome Primary Target Regions 0 6 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/KAPA_HyperExome_hg38_primary_targets.bb\ color 100,143,255\ longLabel Roche - KAPA HyperExome Primary Target Regions\ parent exomeProbesets off\ shortLabel KAPA Hyper T\ track KAPA_HyperExome_hg38_primary_targets\ type bigBed\ wgEncodeReg4AtacLung Lung bigWig Avg. ATAC level of 6 lung experiments (tissues and primary cells only) 0 6 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLungATAC.bw\ color 130,163,45\ longLabel Avg. ATAC level of 6 lung experiments (tissues and primary cells only)\ parent wgEncodeReg4Atac off\ priority 6\ shortLabel Lung\ track wgEncodeReg4AtacLung\ type bigWig\ wgEncodeRegMarkH3k27acNhek NHEK bigWig 0 23439 H3K27Ac Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE 2 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K27Ac Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k27ac\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k27acStdSig\ track wgEncodeRegMarkH3k27acNhek\ type bigWig 0 23439\ wgEncodeRegMarkH3k4me1Nhek NHEK bigWig 0 2669 H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE 0 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K4Me1 Mark (Often Found Near Regulatory Elements) on NHEK Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me1\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k4me1StdSig\ track wgEncodeRegMarkH3k4me1Nhek\ type bigWig 0 2669\ wgEncodeRegMarkH3k4me3Nhek NHEK bigWig 0 8230 H3K4Me3 Mark (Often Found Near Promoters) on NHEK Cells from ENCODE 0 6 212 128 255 233 191 255 0 0 0 regulation 1 color 212,128,255\ longLabel H3K4Me3 Mark (Often Found Near Promoters) on NHEK Cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegMarkH3k4me3\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel NHEK\ table wgEncodeBroadHistoneNhekH3k4me3StdSig\ track wgEncodeRegMarkH3k4me3Nhek\ type bigWig 0 8230\ wgEncodeRegDnaseUwPanc1Peak PANC-1 Pk narrowPeak PANC-1 pancreatic carcinoma cell line DNaseI Peaks from ENCODE 1 6 255 141 85 255 198 170 1 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel PANC-1 Pk\ subGroups view=a_Peaks cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ track wgEncodeRegDnaseUwPanc1Peak\ wgEncodeRegDnaseUwPanc1Wig PANC-1 Sg bigWig 0 12279.3 PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE 0 6 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.05908\ shortLabel PANC-1 Sg\ subGroups cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ table wgEncodeRegDnaseUwPanc1Signal\ track wgEncodeRegDnaseUwPanc1Wig\ type bigWig 0 12279.3\ panelAppAusTandRep PanelApp Australia STRs bigBed 9 + PanelApp Australia Short Tandem Repeats 3 6 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/panelApp/tandRepAus.bb\ filter.version 0\ filterLabel.version Minimum panel version to display\ filterValues.confidenceLevel 3,2,1,0\ itemRgb on\ labelFields hgncSymbol\ longLabel PanelApp Australia Short Tandem Repeats\ mouseOver Gene name: $geneNamePanel: $name
MOI: $modeOfInheritance
Phenotypes: $phenotypes
Confidence level: $confidenceLevel\ parent panelApp on\ priority 6\ shortLabel PanelApp Australia STRs\ skipEmptyFields on\ skipFields chrom,chromStart,blockStarts,blockSizes,mouseOverField\ track panelAppAusTandRep\ type bigBed 9 +\ urls omimGene="https://www.omim.org/entry/$$" ensemblID="https://ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=$$" hgncID="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" panelID="https://panelapp-aus.org/panels/$$/" geneSymbol="https://panelapp-aus.org/panels/entities/$$"\ visibility pack\ recomb1000GAvg Recomb. 1k Genomes bigWig Recombination rate: 1000 Genomes, lifted from hg19 (PR Loh) 2 6 0 130 0 127 192 127 0 0 0
Description
\\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\
\ \This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\
\ \Display Conventions and Configuration
\\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\
\ \\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\
\ \Methods
\\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\
\ \The 1000 Genomes genetic map is based on the
As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\
\ \References
\\
1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\
Hurles ME, McVean GA.\
\
A map of human genome variation from population-scale sequencing.\
Nature. 2010 Oct 28;467(7319):1061-73.\
PMID: 20981092; PMC:
\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\
\ map 0 bigDataUrl /gbdb/hg38/recombRate/recomb1000GAvg.bw\ html recombRate2.html\ longLabel Recombination rate: 1000 Genomes, lifted from hg19 (PR Loh)\ maxHeightPixels 128:60:8\ parent recombRate2\ priority 6\ shortLabel Recomb. 1k Genomes\ track recomb1000GAvg\ type bigWig\ viewLimits 0.0:100\ viewLimitsMax 0:150000\ visibility full\ ncbiRefSeqGenomicDiff RefSeq Diffs bigBed 9 + Differences between NCBI RefSeq Transcripts and the Reference Genome 1 6 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/ncbiRefSeq/ncbiRefSeqGenomicDiff.bb\ itemRgb on\ longLabel Differences between NCBI RefSeq Transcripts and the Reference Genome\ parent refSeqComposite off\ priority 6\ shortLabel RefSeq Diffs\ skipEmptyFields on\ track ncbiRefSeqGenomicDiff\ type bigBed 9 +\ gnomad325XPercentage Sample % > 25X bigWig gnomAD Percentage of Genome Samples with at least 25X Coverage v3.0.1 2 6 105 0 150 180 127 202 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_25.bw\ color 105,0,150\ longLabel gnomAD Percentage of Genome Samples with at least 25X Coverage v3.0.1\ parent gnomad3Coverage off\ priority 6\ shortLabel Sample % > 25X\ track gnomad325XPercentage\ viewLimits 0:1\ gnomad4Exome25XPercentage Sample % > 25X bigWig gnomAD Percentage of Exome Samples with at least 25X Coverage v4.0 2 6 105 0 150 180 127 202 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_25.bw\ color 105,0,150\ longLabel gnomAD Percentage of Exome Samples with at least 25X Coverage v4.0\ parent gnomad4ExomeCoverage off\ priority 6\ shortLabel Sample % > 25X\ track gnomad4Exome25XPercentage\ viewLimits 0:1\ chainSelf Self Alignment chain hg38 Human Chained Self Alignments 0 6 100 50 0 255 240 200 1 0 0Description
\\ This track shows alignments of the human genome with itself, using\ a gap scoring system that allows longer gaps than traditional\ affine gap scoring systems. The system can also tolerate gaps\ in both sets of sequence simultaneously. After filtering out the \ "trivial" alignments produced when identical locations of the \ genome map to one another (e.g. chrN mapping to chrN), \ the remaining alignments point out areas of duplication within the \ human genome. The pseudoautosomal regions of chrX and chrY are an \ exception: in this assembly, these regions have been copied from chrX into \ chrY, resulting in a large amount of self chains aligning in these positions \ on both chromosomes.
\\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions. Single lines indicate \ gaps that are largely due to a deletion in the query assembly or an \ insertion in the target assembly. Double lines represent more complex gaps \ that involve substantial sequence in both the query and target assemblies. \ This may result from inversions, overlapping deletions, an abundance of local \ mutation, or an unsequenced gap in one of the assemblies. In cases where \ multiple chains align over a particular region of the human genome, the \ chains with single-lined gaps are often due to processed pseudogenes, while \ chains with double-lined gaps are more often due to paralogs and unprocessed \ pseudogenes.
\\ Chains have both a score and a normalized score. The score is derived by \ comparing sequence similarity, while penalizing both mismatches and gaps\ in a per base fashion. This leads to longer chains having greater scores, \ even if a smaller chain provides a better match. The normalized score divides\ the score by the length of the alignment, providing a more comparable score value\ not dependent on the match length.
\ \Display Conventions and Configuration
\By default, the chains are colored by the normalized score. This can be changed\ to color based on which chromosome they map to in the aligning organism. There is also\ an option to color all the chains black.
\\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.
\\ By default, chains with a score of 20,000 or more are displayed. This default value provides\ a conservative cutoff, filtering out many false-positive alignments with low sequence \ similarity, or high penalties. It should be noted however, that alignments below this \ threshold may still be indicative of homology.
\\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.
\ \Methods
\\ The genome was aligned to itself using blastz. Trivial alignments were \ filtered out, and the remaining alignments were converted into axt format\ using the lavToAxt program. The axt alignments were fed into axtChain, which \ organizes all alignments between a single target chromosome and a single\ query chromosome into a group and creates a kd-tree out of the gapless \ subsections (blocks) of the alignments. A dynamic program was then run over \ the kd-trees to find the maximally scoring chains of these blocks. Chains \ scoring below a threshold were discarded; the remaining chains are displayed \ in this track.
\ \Credits
\\ Blastz was developed at Pennsylvania State University by\ Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from\ Ross Hardison.
\\ Lineage-specific repeats were identified by Arian Smit and his\ RepeatMasker\ program.
\\ The axtChain program was developed at the University of California\ at Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.\
\\ The browser display and database storage of the chains were generated\ by Robert Baertsch and Jim Kent.
\ \References
\ \\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput 2002, 115-26 (2002).\
\ \\ Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\ \ Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.\ Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\
\ \\ Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W.\ \ Human-mouse alignments with BLASTZ.\ Genome Res. 2003 Jan;13(1):103-7.\
\ rep 1 altColor 255,240,200\ baseColorDefault diffBases\ baseColorUseSequence 2bit\ chainColor Normalized Score\ chainNormScoreAvailable yes\ color 100,50,0\ group rep\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Human Chained Self Alignments\ matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91\ matrixHeader A, C, G, T\ otherDb hg38\ otherTwoBitUrl /gbdb/hg38/hg38.2bit\ priority 6\ scoreFilter 20000\ shortLabel Self Alignment\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 100000.0\ spectrum on\ track chainSelf\ type chain hg38\ visibility hide\ ucneClusters UCNE Clusters bigBed 4 + UCNEBase: 239 Cluster of UCNE elements 0 6 0 0 0 127 127 127 0 0 0 https://epd.expasy.org/ucnebase/view.php?data=cluster&entry=$$ compGeno 1 bigDataUrl /gbdb/hg38/unusualcons/clusters.bb\ longLabel UCNEBase: 239 Cluster of UCNE elements\ parent unusualcons on\ shortLabel UCNE Clusters\ track ucneClusters\ type bigBed 4 +\ url https://epd.expasy.org/ucnebase/view.php?data=cluster&entry=$$\ umap36Quantitative Umap M36 bigWig 0.027778 1.0 Multi-read mappability with 36-mers 0 6 80 70 240 167 162 247 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k36.Umap.MultiTrackMappability.bw\ color 80,70,240\ longLabel Multi-read mappability with 36-mers\ parent umapBigWig off\ priority 6\ shortLabel Umap M36\ subGroups view=MR\ track umap36Quantitative\ type bigWig 0.027778 1.0\ visibility hide\ iscaLikelyPathogenic Uncert Path gvf ClinGen CNVs: Uncertain: Likely Pathogenic 3 6 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Uncertain: Likely Pathogenic\ parent iscaViewDetail off\ shortLabel Uncert Path\ subGroups view=cnv class=likP level=sub\ track iscaLikelyPathogenic\ tgpHG02024_VN049_KHV VN049 KHV Trio vcfPhasedTrio 1000 Genomes Kinh in Ho Chi Minh City, Vietnam Trio 2 6 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX, varRep 0 longLabel 1000 Genomes Kinh in Ho Chi Minh City, Vietnam Trio\ parent tgpTrios\ shortLabel VN049 KHV Trio\ track tgpHG02024_VN049_KHV\ type vcfPhasedTrio\ vcfChildSample HG02024|child\ vcfParentSamples HG02025|mother,HG02026|father\ visibility full\ chainAquChr2 aquChr2 Chain chain aquChr2 Golden eagle (Oct. 2014 (aquChr-1.0.2/aquChr2)) Chained Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Golden eagle (Oct. 2014 (aquChr-1.0.2/aquChr2)) Chained Alignments\ otherDb aquChr2\ parent vertebrateChainNetViewchain off\ shortLabel aquChr2 Chain\ subGroups view=chain species=s016 clade=c01\ track chainAquChr2\ type chain aquChr2\ chainPonAbe3 Orangutan Chain chain ponAbe3 Orangutan (Jan. 2018 (Susie_PABv2/ponAbe3)) Chained Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Orangutan (Jan. 2018 (Susie_PABv2/ponAbe3)) Chained Alignments\ otherDb ponAbe3\ parent primateChainNetViewchain off\ shortLabel Orangutan Chain\ subGroups view=chain species=s013a clade=c00\ track chainPonAbe3\ type chain ponAbe3\ netMm39 Mouse Net netAlign mm39 chainMm39 Mouse (Jun. 2020 (GRCm39/mm39)) Alignment Net 1 7 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Mouse (Jun. 2020 (GRCm39/mm39)) Alignment Net\ otherDb mm39\ parent placentalChainNetViewnet on\ shortLabel Mouse Net\ subGroups view=net species=s012a clade=c00\ track netMm39\ type netAlign mm39 chainMm39\ encTfChipPkENCFF576PUH A549 CREB1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF576PUH) 0 7 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in A549 from ENCODE 3 (ENCFF576PUH)\ parent encTfChipPk off\ shortLabel A549 CREB1 1\ subGroups cellType=A549 factor=CREB1\ track encTfChipPkENCFF576PUH\ cloneEndABC18 ABC18 bed 12 Agencourt fosmid library 18 0 7 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 18\ parent cloneEndSuper off\ priority 7\ shortLabel ABC18\ subGroups source=agencourt\ track cloneEndABC18\ type bed 12\ visibility hide\ affyCytoScanHD Affy CytoScan HD bigBed 12 Affymetrix Cytoscan HD GeneChip Array 3 7 0 0 0 127 127 127 0 0 0Description
\Agilent Arrays
\\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\
\Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\
\ \\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\
\ \Illumina 450k and 850k Methylation Arrays
\\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks, not the probe locations themselves. Contact us\ or Illumina if you need the probe locations directly. More information about\ the arrays can be found on the\ Infinium MethylationEPIC Kit website.\
\ Note: The 450k track on hg38 contains 128,989 regions representing the target regions, not the probes\ themselves.
\ \Illumina CytoSNP 850K Probe Array
\\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \
\ \Affymetrix Cytoscan HD GeneChip Array
\\ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\
\ \Bionano DLE-1 CTTAAG sites
\ \\ Bionano Laboratories provides access to Optical Genome Mapping (OGM) data for projects across a variety of\ applications for researchers, clinicians, and pharmaceutical companies.
\This track shows the CTTAAG sites used by the \ Bionano Optical Genome Mapping system,\ an assay to detect structural variants.\
\ \Display Conventions and Configuration
\ \\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \ \Methods
\\ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.
\\ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.
\\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\
\\ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\
\\ The Bionano track was created by receiving the BED files from\ \ apang@bionano.\ com\ \ and converted to bigBed files using the bedToBigBed tool.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the Agilent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.
\\ Thanks to Andy Pang from Bionano Genomics for providing the BED data file.
\ varRep 1 bigDataUrl /gbdb/hg38/genotypeArrays/affyCytoScanHD.bb\ html genotypeArrays\ itemRgb on\ longLabel Affymetrix Cytoscan HD GeneChip Array\ mouseOver Probe ID: $nameSize: $blockSizes
Strand: $strand\ parent genotypeArrays on\ priority 7\ shortLabel Affy CytoScan HD\ track affyCytoScanHD\ type bigBed 12\ visibility pack\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_fwd AorticSmsToFgf2_00hr15minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward 0 7 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_fwd AorticSmsToFgf2_00hr15minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward 1 7 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep2%20%28LK5%29.CNhs13359.12741-135I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep2 (LK5)_CNhs13359_12741-135I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12741-135I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep2LK5_CNhs13359_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12741-135I5\ urlLabel FANTOM5 Details:\ bismap100Neg Bismap S100 - bigBed 6 Single-read mappability with 100-mers after bisulfite conversion (reverse strand) 0 7 240 170 80 247 212 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k100.G2A-Converted.bb\ color 240,170,80\ longLabel Single-read mappability with 100-mers after bisulfite conversion (reverse strand)\ parent bismapBigBed off\ priority 7\ shortLabel Bismap S100 -\ subGroups view=SR\ track bismap100Neg\ visibility hide\ bismap50Neg Bismap S50 - bigBed 6 Single-read mappability with 50-mers after bisulfite conversion (reverse strand) 0 7 240 120 80 247 187 167 0 0 0 map 1 bigDataUrl /gbdb/hg38/hoffmanMappability/k50.G2A-Converted.bb\ color 240,120,80\ longLabel Single-read mappability with 50-mers after bisulfite conversion (reverse strand)\ parent bismapBigBed off\ priority 7\ shortLabel Bismap S50 -\ subGroups view=SR\ track bismap50Neg\ visibility hide\ gtexCovBladder Bladder bigWig Bladder 0 7 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-S3XE-1226-SM-4AD4L.Bladder.RNAseq.bw\ color 205,183,158\ longLabel Bladder\ parent gtexCov\ shortLabel Bladder\ track gtexCovBladder\ wgEncodeReg4TxnBloodVesselPlus Blood vessel + bigWig Avg. + strand total RNA-seq level of 21 blood vessel experiments (tissues and primary cells only) 0 7 255 37 41 255 146 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/bloodVesselPlus.bw\ color 255,37,41\ longLabel Avg. + strand total RNA-seq level of 21 blood vessel experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 7\ shortLabel Blood vessel +\ track wgEncodeReg4TxnBloodVesselPlus\ type bigWig\ primateChainNetViewchain Chains bed 3 Primate Genomes, Chain and Net Alignments 3 7 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Primate Genomes, Chain and Net Alignments\ parent primateChainNet\ shortLabel Chains\ spectrum on\ track primateChainNetViewchain\ view chain\ visibility pack\ unipChain Chains bigBed 12 + UniProt Mature Protein Products (Polypeptide Chains) 1 7 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipChain.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Mature Protein Products (Polypeptide Chains)\ mouseOver UniProt record: $uniProtId
Position: $position
UniProt status: $status\ parent uniprot\ priority 7\ shortLabel Chains\ track unipChain\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#ptm_processing" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ COAD COAD bigLolly 12 + Colon adenocarcinoma 0 7 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/COAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Colon adenocarcinoma\ parent gdcCancer off\ priority 7\ shortLabel COAD\ track COAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ colorsDbSnv CoLoRSdb 1k LR SNV/Ind vcfTabix SNV Frequencies: CoLoRSdb v1.2.0 - 1,027 PacBio HiFi WGS, SNV/indel callset 0 7 0 0 0 127 127 127 0 0 0
Description
\ \\ This track shows allele frequencies for single-nucleotide variants (SNVs)\ and small indels joint-called across 1,027 population-consented human\ samples sequenced with PacBio HiFi long reads by the Consortium of Long\ Read Sequencing (CoLoRSdb). Sites were joint-genotyped with\ DeepVariant\ and merged across samples with\ GLnexus.
\ \\ Two versions of the callset are displayed, chosen automatically according\ to the browser's reference assembly:
\- \
- On hg38, the GRCh38 release is shown. \
- On hs1 (T2T-CHM13v2), the CHM13 release is shown (calls are\ made natively against T2T-CHM13v2, not lifted). \
\ Only population-level allele frequencies (AF), allele counts (AC), and\ total allele numbers (AN) are displayed; per-sample genotypes are not\ included in the released VCF. Multi-allelic sites have been decomposed so\ that each alternate allele has its own VCF row.
\ \Display Conventions
\ \\ The track uses the standard UCSC VCF representation. Mouseover\ shows the variant, reference/alternate alleles, AC, AN and AF. At higher\ zoom levels, alleles use base-specific colors. Homozygous ALT positions\ are marked with one letter, heterozygotes with two letters.
\ \Methods
\ \\ CoLoRSdb member sites sequenced 1,027 individuals with PacBio HiFi\ long reads. Per-sample variant calls came from DeepVariant. GLnexus\ then joint-genotyped them into a cohort-wide population VCF. Only\ sites that passed CoLoRSdb's standard quality filters are included.
\ \Data Access
\ \\ The data can be explored interactively with the\ Table Browser or\ Data Integrator, and accessed from\ scripts via our API\ (track=colorsDbSnv).
\ \The VCF files are available on our download server:\ \ GRCh38 VCF and\ \ CHM13 VCF.\ They are hard symlinks to the upstream CoLoRSdb releases, which are\ distributed from\ colorsdb.org and the\ CoLoRSdb GitHub\ repositories.
\ \Credits
\ \Thanks to the Consortium of Long Read Sequencing (CoLoRSdb) members\ and PacBio, who produced and released these joint-called long-read\ variant frequencies.
\ \References
\ \See the main SNV Frequencies\ container track for the general context and a comparison table across\ all included frequency databases.
\ varRep 1 bigDataUrl /gbdb/hg38/varFreqs/colorsDb/colorsDbSnv.vcf.gz\ dataVersion v1.2.0\ longLabel SNV Frequencies: CoLoRSdb v1.2.0 - 1,027 PacBio HiFi WGS, SNV/indel callset\ parent varFreqs on\ priority 7\ shortLabel CoLoRSdb 1k LR SNV/Ind\ track colorsDbSnv\ type vcfTabix\ visibility hide\ cortexNeuron42J Cortex - Neuron - Z0000042J bigWig Methylation Atlas: Cortex - Neuron - Z0000042J 2 7 138 43 226 196 149 240 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/cortexNeuron42J.bw\ color 138,43,226\ longLabel Methylation Atlas: Cortex - Neuron - Z0000042J\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 7\ shortLabel Cortex - Neuron - Z0000042J\ subGroups cellType=Neuron dataType=Replicate\ track cortexNeuron42J\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ iscaCuratedPathogenic Curated Path gvf ClinGen CNVs: Curated Pathogenic 3 7 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/?term=$$ phenDis 1 longLabel ClinGen CNVs: Curated Pathogenic\ parent iscaViewDetail off\ shortLabel Curated Path\ subGroups view=cnv class=path level=cur\ track iscaCuratedPathogenic\ wgEncodeReg4DnaseEmbryo Embryo bigWig Avg. DNase level of 9 embryo experiments (tissues and primary cells only) 0 7 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEmbryoDNase.bw\ color 118,158,101\ longLabel Avg. DNase level of 9 embryo experiments (tissues and primary cells only)\ parent wgEncodeReg4Dnase off\ priority 7\ shortLabel Embryo\ track wgEncodeReg4DnaseEmbryo\ type bigWig\ ENCFF428XFI_ENCFF280PUF_ENCFF469WVA_ENCFF644EEX ENCFF428XFI_ENCFF280PUF_ENCFF469WVA_ENCFF644EEX bigBed 9 + 5 GM12878: (1) cCREs 4 7 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF428XFI_ENCFF280PUF_ENCFF469WVA_ENCFF644EEX.bb\ longLabel GM12878: (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 34\ shortLabel ENCFF428XFI_ENCFF280PUF_ENCFF469WVA_ENCFF644EEX\ subGroups organ=blood view=cCREs_view simpleBiosample=GM12878 biosampleType=cell_line donor=ENCDO000AAK dataType=typeCcres\ track ENCFF428XFI_ENCFF280PUF_ENCFF469WVA_ENCFF644EEX\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF153YEN ENCSR000AAD + strand bigWig Bronchial epithelial cell female adult (40 years) and male adult (68 years) + strand total RNA-seq signal 2 7 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/05ec519d-5531-4dd3-ab6d-9d03ececda78/ENCFF153YEN.bigWig\ color 130,163,45\ longLabel Bronchial epithelial cell female adult (40 years) and male adult (68 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAD + strand\ track wgEncodeReg4RnaSeq_ENCFF153YEN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF430KTH ENCSR000AKO Peak bigBed 5 K562 CTCF peaks 4 7 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3455872f-f735-4040-87ed-f00a4b7e534e/ENCFF430KTH.bigBed\ labelFields none\ longLabel K562 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AKO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF430KTH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF947JAB ENCSR000ALA Peak bigBed 5 Endothelial cell of umbilical vein male newborn CTCF peak 4 7 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a4d1978d-093c-4082-bc8d-9c390d06d768/ENCFF947JAB.bigBed\ color 0,176,240\ labelFields none\ longLabel Endothelial cell of umbilical vein male newborn CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALA Peak\ track wgEncodeReg4Epigenetics_ENCFF947JAB\ type bigBed 5\ visibility squish\ wgEncodeReg4MarkH3k4me3Eye Eye bigWig H3K4me3 level of 1 eye experiment (tissues and primary cells only) 0 7 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEyeH3K4me3.bw\ color 163,127,144\ longLabel H3K4me3 level of 1 eye experiment (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 7\ shortLabel Eye\ track wgEncodeReg4MarkH3k4me3Eye\ type bigWig\ lincRNAsCTForeskin_R Foreskin_R bed 5 + lincRNAs from foreskin_r 1 7 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from foreskin_r\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Foreskin_R\ subGroups view=lincRNAsRefseqExp tissueType=foreskin_r\ track lincRNAsCTForeskin_R\ knownGeneV38 GENCODE V38 bigGenePred GENCODE V38 0 7 0 0 0 127 127 127 0 0 0
Description
\\ The GENCODE Genes track (version 38, May 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The following table provides statistics for the v38 release derived from the GTF file that contains\ annotations only on the main chromosomes. More information on how they were generated can be found\ in the GENCODE site.
\ \\
\ \\
\ GENCODE v38 Release Stats \ Genes Observed Transcripts Observed \ Protein-coding genes 19,955 Protein-coding transcripts 86,757 \ Long non-coding RNA genes 17,944 - full length protein-coding 61,015 \ Small non-coding RNA genes 7,567 - partial length protein-coding 25,742 \ Pseudogenes 14,773 Nonsense mediated decay transcripts 18,881 \ Immunoglobulin/T-cell receptor gene segments 409 Long non-coding RNA loci transcripts 48,752
\
\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding\
- non-coding\
- pseudogene\
- problem\
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \Methods
\\
The GENCODE v38 track was built from the GENCODE downloads file \
gencode.v38.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources \
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney.
\ \References
\\
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa\
A, Searle S et al.\
\
GENCODE: the reference human genome annotation for The ENCODE Project.\
Genome Res. 2012 Sep;22(9):1760-74.\
PMID: 22955987; PMC:
\
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R,\
Swarbreck D et al.\
\
GENCODE: producing a reference annotation for ENCODE.\
Genome Biol. 2006;7 Suppl 1:S4.1-9.\
PMID: 16925838; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV38.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV38\ group genes\ html knownGeneV38\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V38\ maxItems 50000\ parent knownGeneArchive\ priority 7\ searchIndex name\ shortLabel GENCODE V38\ track knownGeneV38\ type bigGenePred\ visibility hide\ geneHancerInteractions GH Interactions bigInteract Interactions between GeneHancer regulatory elements and genes 2 7 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$Description
\Chain Track
\\ The chain track shows alignments of human (Dec. 2013 (GRCh38/hg38)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \
\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.
\\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.
\ \Net Track
\\ The net track shows only the alignments from the highest-scoring chain\ for each region of the human genome assembly. It is useful for finding\ orthologous regions and for studying genome rearrangement. The human\ sequence used in this annotation is from the Dec. 2013 (GRCh38/hg38) assembly.
\ \Display Conventions and Configuration
\Chain Track
\By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.
\\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.
\ \Net Track
\\ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.
\\ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.
\\ Individual items in the display are categorized as one of four types\ (other than gap):
\- \
- Top - the best, longest match. Displayed on level 1.\
- Syn - line-ups on the same chromosome as the gap in the level above\ it.\
- Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
- NonSyn - a match to a chromosome different from the gap in the \ level above.\
Methods
\Chain track
\\ The assemblies were examined for any transposons that had been inserted\ since the divergence of the two species. Any such transposons were\ removed before running the alignment. The abbreviated genomes were\ aligned with lastz, and the removed transposons were then added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\
\ The lastz matrices used for these alignments can be found in our\ download directory\ for the Dec. 2013 (GRCh38/hg38) assembly. See the README.txt file within the relevant\ vsAssembly directory for details (e.g., parameters for the alignment with\ tarSyr2 can be found in the vsTarSyr2/ subdirectory).\
\
For the alignments to Chimp and Rhesus, chains scoring below a minimum\
score of '5000' were discarded; the remaining chains\
are displayed in this track. The linear gap matrix used with axtChain:
\
-linearGap=loose\ \ tablesize 11\ smallSize 111\ position 1 2 3 11 111 2111 12111 32111 72111 152111 252111\ qGap 325 360 400 450 600 1100 3600 7600 15600 31600 56600\ tGap 325 360 400 450 600 1100 3600 7600 15600 31600 56600\ bothGap 625 660 700 750 900 1400 4000 8000 16000 32000 57000\\ \ For the alignments to Tarsier and Bonobo, chains scoring\ below a minimum score of '3000' were discarded; the remaining chains\ are displayed in this track. The same linear gap matrix shown above\ was used with axtChain.\ \
Chains for low-coverage assemblies for which no browser has been built \ are not available as browser tracks, but only from our\ downloads page.\
\ \ See also: lastz parameters and other details (e.g., update time) \ and chain minimum score and gap parameters used in these alignments.\ \Net track
\\ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.
\ \Credits
\\ Harris, R.S. (2007) Improved pairwise alignment of genomic DNA. Ph.D. Thesis, \ The Pennsylvania State University.
\\ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.
\\ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.
\\ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.
\\ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.
\\ \
References
\\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\
\ \\
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\
Evolution's cauldron:\
duplication, deletion, and rearrangement in the mouse and human genomes.\
Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\
PMID: 14500911; PMC:
Description
\\ This track displays simple tandem repeats (possibly imperfect repeats) located\ by Tandem Repeats\ Finder (TRF) which is specialized for this purpose. These repeats can\ occur within coding regions of genes and may be quite\ polymorphic. Repeat expansions are sometimes associated with specific\ diseases.
\ \Methods
\\ For more information about the TRF program, see Benson (1999).\
\ \Credits
\\ TRF was written by \ Gary Benson.
\ \References
\ \\
Benson G.\
\
Tandem repeats finder: a program to analyze DNA sequences.\
Nucleic Acids Res. 1999 Jan 15;27(2):573-80.\
PMID: 9862982; PMC:
Description
\ \\ The RefSeq Genes track shows known human protein-coding and\ non-protein-coding genes taken from the NCBI RNA reference sequences\ collection (RefSeq). The data underlying this track are updated weekly.
\ \\ Please visit the Feedback for Gene and Reference Sequences (RefSeq) page to\ make suggestions, submit additions and corrections, or ask for help concerning\ RefSeq records.\
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ \ gene prediction tracks.\ The color shading indicates the level of review the RefSeq record has\ undergone: predicted (light), provisional (medium), reviewed (dark).\
\ \\ The item labels and display colors of features within this track can be\ configured through the controls at the top of the track description page.\
- \
- Label: By default, items are labeled by gene name. Click the\ appropriate Label option to display the accession name instead of the gene\ name, show both the gene and accession names, or turn off the label\ completely. \
- Codon coloring: This track contains an optional codon coloring\ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information about this\ feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page. \
- Hide non-coding genes: By default, both the protein-coding and\ non-protein-coding genes are displayed. If you wish to see only the coding\ genes, click this box. \
Methods
\ \\ RefSeq RNAs were aligned against the human genome using BLAT. Those\ with an alignment of less than 15% were discarded. When a single RNA\ aligned in multiple places, the alignment having the highest base identity\ was identified. Only alignments having a base identity level within 0.1% of\ the best and at least 96% base identity with the genomic sequence were kept.\
\ \Credits
\ \\ This track was produced at UCSC from RNA sequence data generated by scientists\ worldwide and curated by the NCBI\ RefSeq project.\
\ \References
\ \\
Kent WJ.\
\
BLAT - the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
\
Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\
Landrum MJ, McGarvey KM et al.\
\
RefSeq: an update on mammalian reference sequences.\
Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\
PMID: 24259432; PMC:
\
Pruitt KD, Tatusova T, Maglott DR.\
\
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.\
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\
PMID: 15608248; PMC:
Position: $position
UniProt status: $status\ parent uniprot\ priority 8\ shortLabel Disulf. Bonds\ track unipDisulfBond\ type bigBed 12 +\ visibility dense\ DLBC DLBC bigLolly 12 + Lymphoid Neoplasm Diffuse Large B-cell Lymphoma 0 8 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/DLBC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Lymphoid Neoplasm Diffuse Large B-cell Lymphoma\ parent gdcCancer off\ priority 8\ shortLabel DLBC\ track DLBC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ unipDomain Domains bigBed 12 + UniProt Domains 1 8 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipDomain.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Domains\ mouseOver UniProt record: $uniProtId
Position: $position
UniProt status: $status\ parent uniprot\ priority 8\ shortLabel Domains\ track unipDomain\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ ENCFF339ZGM_ENCFF695YII_ENCFF383GZA_ENCFF244CXJ ENCFF339ZGM_ENCFF695YII_ENCFF383GZA_ENCFF244CXJ bigBed 9 + 5 HL-60: (1) cCREs 4 8 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF339ZGM_ENCFF695YII_ENCFF383GZA_ENCFF244CXJ.bb\ longLabel HL-60: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 56\ shortLabel ENCFF339ZGM_ENCFF695YII_ENCFF383GZA_ENCFF244CXJ\ subGroups organ=blood view=cCREs_view simpleBiosample=HL-60 biosampleType=cell_line donor=ENCDO000AAM dataType=typeCcres\ track ENCFF339ZGM_ENCFF695YII_ENCFF383GZA_ENCFF244CXJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF891TIX ENCSR000AAD - strand bigWig Bronchial epithelial cell female adult (40 years) and male adult (68 years) - strand total RNA-seq signal 2 8 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/438fe38a-f19f-42da-8c11-18576b7babd9/ENCFF891TIX.bigWig\ color 130,163,45\ longLabel Bronchial epithelial cell female adult (40 years) and male adult (68 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAD - strand\ track wgEncodeReg4RnaSeq_ENCFF891TIX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF979PWH ENCSR000AKO Signal bigWig K562 CTCF ENCSR000AKO signal 2 8 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/85161a5a-d6b5-49d2-bc0a-db0b217ff0d5/ENCFF979PWH.bigWig\ color 254,75,173\ longLabel K562 CTCF ENCSR000AKO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AKO Signal\ track wgEncodeReg4TfChip_ENCFF979PWH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF334OZC ENCSR000ALA Signal bigWig Endothelial cell of umbilical vein male newborn CTCF signal 2 8 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d2c7d617-dcc1-45d5-a069-dfc8c38e902e/ENCFF334OZC.bigWig\ color 0,176,240\ longLabel Endothelial cell of umbilical vein male newborn CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALA Signal\ track wgEncodeReg4Epigenetics_ENCFF334OZC\ type bigWig\ visibility full\ wgEncodeReg4DnaseEpithelium Epithelium bigWig DNase level of 1 epithelium experiment (tissues and primary cells only) 0 8 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEpitheliumDNase.bw\ color 221,126,107\ longLabel DNase level of 1 epithelium experiment (tissues and primary cells only)\ parent wgEncodeReg4Dnase off\ priority 8\ shortLabel Epithelium\ track wgEncodeReg4DnaseEpithelium\ type bigWig\ finngen FinnGen R12 500k imputed vcfTabix SNV Frequencies: Finland FinnGen - 500k samples, arrays, imputation used 8.5k WGS 0 8 0 0 0 127 127 127 0 0 0
Description
\\ FinnGen is a public-private partnership\ that combines genotype data from Finnish biobanks with digital health record data from Finnish\ health registries. The R12 release contains imputed variants from 500,348 biobank samples typed on\ genotyping arrays. The imputation used phased variants from 8,554 high-quality\ whole genome sequences, also from Finland. That is roughly 10% of the Finnish\ population. Phenotype links can be viewed at the\ FinnGen PheWeb.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ TSV data can be requested via the form at\ FinnGen,\ which triggers an automated email containing the download link.\ A script in our GitHub repo converts this file to VCF (see Methods below).\
\ \Methods
\\ FinnGen participants were genotyped using a custom Axiom FinnGen1 array, supplemented by legacy\ collections genotyped with other arrays. Imputation used a population-specific reference panel of\ high-coverage (25–30x) whole-genome sequences from Finnish individuals. Ancestry outliers were\ removed via PCA against 1000 Genomes reference samples, and 5,780 duplicates and monozygotic twins\ were excluded. Variant quality was assessed using VQSR.\
\\ R12 annotated variants were downloaded from the Google Cloud bucket link received through an email\ and converted to VCF with a\ custom Python script.\ The conversion steps for all source files of the varFreqs track are recorded in the makeDoc file of the track.\ Some tracks also need python scripts, which live on GitHub.\
\ \Credits
\\ Thanks to the participants and investigators of the FinnGen study.\
\ \References
\\
Kurki MI, Karjalainen J, Palta P, Sipilä TP, Kristiansson K, Donner KM, Reeve MP, Laivuori H,\
Aavikko M, Kaunisto MA et al.\
\
FinnGen provides genetic insights from a well-phenotyped isolated population.\
Nature. 2023 Jan;613(7944):508-518.\
PMID: 36653562; PMC:
Description
\\ The GENCODE Genes track (version 36, Oct 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ By default, only the basic gene set is\ displayed, which is a subset of the comprehensive gene set. The basic set represents transcripts\ that GENCODE believes will be useful to the majority of users.
\ \\ The track includes protein-coding genes, non-coding RNA genes, and pseudo-genes, though pseudo-genes\ are not displayed by default. It contains annotations on the reference chromosomes as well as\ assembly patches and alternative loci (haplotypes).
\ \\ The following table provides statistics for the v36 release derived from the GTF file that contains\ annotations only on the main chromosomes. More information on how they were generated can be found\ in the GENCODE site.
\ \\
\ \\
\ GENCODE v36 Release Stats \ Genes Observed Transcripts Observed \ Protein-coding genes 19,965 Protein-coding transcripts 83,986 \ Long non-coding RNA genes 17,910 - full length protein-coding 57,935 \ Small non-coding RNA genes 7,576 - partial length protein-coding 26,051 \ Pseudogenes 14,749 Nonsense mediated decay transcripts 15,811 \ Immunoglobulin/T-cell receptor gene segments 645 Long non-coding RNA loci transcripts 48,351
\
\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\\ By default, this track displays only the basic GENCODE set, splice variants, and non-coding genes.\ It includes options to display the entire GENCODE set and pseudogenes. To customize these\ options, the respective boxes can be checked or unchecked at the top of this description page. \ \
\ This track also includes a variety of labels which identify the transcripts when visibility is set\ to "full" or "pack". Gene symbols (e.g. NIPA1) are displayed by default, but\ additional options include GENCODE Transcript ID (ENST00000561183.5), UCSC Known Gene ID\ (uc001yve.4), UniProt Display ID (Q7RTP0). Additional information about gene\ and transcript names can be found in our\ FAQ.
\ \\ This track, in general, follows the display conventions for gene prediction tracks. The exons for\ putative non-coding genes and untranslated regions are represented by relatively thin blocks, while\ those for coding open reading frames are thicker. \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding\
- non-coding\
- pseudogene\
- problem\
- all 2-way pseudogenes\
- all polyA annotations\
\ This track contains an optional codon coloring feature that allows users to\ quickly validate and compare gene predictions. There is also an option to display the data as\ a density graph, which\ can be helpful for visualizing the distribution of items over a region.
\ \Methods
\\
The GENCODE v36 track was built from the GENCODE downloads file \
gencode.v36.chr_patch_hapl_scaff.annotation.gff3.gz. Data from other sources \
were correlated with the GENCODE data to build association tables.
Related Data
\\ The GENCODE Genes transcripts are annotated in numerous tables, each of which is also available as a\ downloadable\ file.\ \
\ One can see a full list of the associated tables in the Table Browser by selecting GENCODE Genes from the track menu; this list\ is then available on the table menu.\ \ \
Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator. \ The genePred format files for hg38 are available from our \ \ downloads directory or in our\ \ GTF download directory. \ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\ \Credits
\\ The GENCODE Genes track was produced at UCSC from the GENCODE comprehensive gene set using a\ computational pipeline developed by Jim Kent and Brian Raney.
\ \References
\\
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa\
A, Searle S et al.\
\
GENCODE: the reference human genome annotation for The ENCODE Project.\
Genome Res. 2012 Sep;22(9):1760-74.\
PMID: 22955987; PMC:
\
Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JG, Storey R,\
Swarbreck D et al.\
\
GENCODE: producing a reference annotation for ENCODE.\
Genome Biol. 2006;7 Suppl 1:S4.1-9.\
PMID: 16925838; PMC:
A full list of GENCODE publications is available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ genes 1 baseColorDefault genomicCodons\ bigDataUrl /gbdb/hg38/gencode/gencodeV36.bb\ defaultLabelFields geneName\ defaultLinkedTables kgXref\ directUrl /cgi-bin/hgGene?hgg_gene=%s&hgg_chrom=%s&hgg_start=%d&hgg_end=%d&hgg_type=%s&db=%s\ externalDb knownGeneV36\ group genes\ html knownGeneV36\ idXref kgAlias kgID alias\ intronGap 12\ isGencode3 on\ itemRgb on\ labelFields geneName,name,geneName2,name2\ longLabel GENCODE V36\ maxItems 50000\ parent knownGeneArchive\ priority 8\ searchIndex name\ shortLabel GENCODE V36\ track knownGeneV36\ type bigGenePred\ visibility hide\ geneHancerClusteredInteractions GH Clusters bigInteract Clustered interactions of GeneHancer regulatory elements and genes 3 8 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$Description
\Chain Track
\\ The chain track shows alignments of human (Dec. 2013 (GRCh38/hg38)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \
\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.
\\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.
\ \Net Track
\\ The net track shows the best human/other chain for \ every part of the other genome. It is useful for\ finding orthologous regions and for studying genome\ rearrangement. The human sequence used in this annotation is from\ the Dec. 2013 (GRCh38/hg38) assembly.
\ \Display Conventions and Configuration
\Chain Track
\By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.
\\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.
\ \Net Track
\\ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.
\\ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.
\\ Individual items in the display are categorized as one of four types\ (other than gap):
\- \
- Top - the best, longest match. Displayed on level 1.\
- Syn - line-ups on the same chromosome as the gap in the level above\ it.\
- Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
- NonSyn - a match to a chromosome different from the gap in the \ level above.\
Methods
\Chain track
\\
Transposons that have been inserted since the human/other\
split were removed from the assemblies. The abbreviated genomes were\
aligned with lastz, and the transposons were added back in.\
The resulting alignments were converted into axt format using the lavToAxt\
program. The axt alignments were fed into axtChain, which organizes all\
alignments between a single human chromosome and a single\
chromosome from the other genome into a group and creates a kd-tree out\
of the gapless subsections (blocks) of the alignments. A dynamic program\
was then run over the kd-trees to find the maximally scoring chains of these\
blocks.\
\
\
\
Chains scoring below a minimum score of '5000' were discarded;\
the remaining chains are displayed in this track. The linear gap\
matrix used with axtChain:
\
-linearGap=loose\ \ tablesize 11\ smallSize 111\ position 1 2 3 11 111 2111 12111 32111 72111 152111 252111\ qGap 325 360 400 450 600 1100 3600 7600 15600 31600 56600\ tGap 325 360 400 450 600 1100 3600 7600 15600 31600 56600\ bothGap 625 660 700 750 900 1400 4000 8000 16000 32000 57000\\ \ See also: lastz parameters used in these alignments,\ and chain minimum score and gap parameters used in these alignments.\ \ \
Net track
\\ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.
\ \Credits
\\ LASTZ was developed at\ Miller Lab at Pennsylvania State University by \ Bob Harris.\
\\ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.
\\ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.
\\ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.
\\ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.
\\ \
References
\\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\
\ \\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\
\ \\
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\
Evolution's cauldron:\
duplication, deletion, and rearrangement in the mouse and human genomes.\
Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\
PMID: 14500911; PMC:
\
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\
Haussler D, Miller W.\
Human-mouse alignments with BLASTZ.\
Genome Res. 2003 Jan;13(1):103-7.\
PMID: 12529312; PMC:
Description
\ \\ This track depicts masked sequence as determined by\ WindowMasker. The\ WindowMasker tool is included in the NCBI C++ toolkit. The source code\ for the entire toolkit is available from the NCBI\ \ FTP site.\
\ \Methods
\ \\ To create this track, WindowMasker was run with the following parameters:\
\ windowmasker -mk_counts true -input hg38.fa -output wm_counts\ windowmasker -ustat wm_counts -sdust true -input hg38.fa -output repeats.bed\\ The repeats.bed (BED3) file was loaded into the "windowmaskerSdust" table for\ this track.\ \ \
References
\ \\ Morgulis A, Gertz EM, Schäffer AA, Agarwala R.\ WindowMasker: window-based masker for sequenced genomes.\ Bioinformatics. 2006 Jan 15;22(2):134-41.\ PMID: 16287941\
\ rep 1 group rep\ longLabel Genomic Intervals Masked by WindowMasker + SDust\ priority 8\ shortLabel WM + SDust\ track windowmaskerSdust\ type bed 3\ visibility hide\ chainThaSir1 thaSir1 Chain chain thaSir1 Garter snake (Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Garter snake (Jun. 2015 (Thamnophis_sirtalis-6.0/thaSir1)) Chained Alignments\ otherDb thaSir1\ parent vertebrateChainNetViewchain off\ shortLabel thaSir1 Chain\ subGroups view=chain species=s028b clade=c02\ track chainThaSir1\ type chain thaSir1\ chainRn7 Rat Chain chain rn7 Rat (Nov. 2020 (mRatBN7.2/rn7)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Rat (Nov. 2020 (mRatBN7.2/rn7)) Chained Alignments\ otherDb rn7\ parent placentalChainNetViewchain off\ shortLabel Rat Chain\ subGroups view=chain species=s024a clade=c00\ track chainRn7\ type chain rn7\ chainNomLeu3 Gibbon Chain chain nomLeu3 Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Gibbon (Oct. 2012 (GGSC Nleu3.0/nomLeu3)) Chained Alignments\ otherDb nomLeu3\ parent primateChainNetViewchain off\ shortLabel Gibbon Chain\ subGroups view=chain species=s014 clade=c00\ track chainNomLeu3\ type chain nomLeu3\ phastConsElements470way 470 Mamm. El bigBed 5 . 470 mammals Conserved Elements 0 9 110 10 40 182 132 147 0 0 0 compGeno 1 bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/phastCons470way/hg38.phastConsElements470way.bb\ color 110,10,40\ longLabel 470 mammals Conserved Elements\ noInherit on\ parent cons470wayViewelements off\ priority 9\ shortLabel 470 Mamm. El\ subGroups view=elements\ track phastConsElements470way\ type bigBed 5 .\ encTfChipPkENCFF535MZG A549 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF535MZG) 0 9 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in A549 from ENCODE 3 (ENCFF535MZG)\ parent encTfChipPk off\ shortLabel A549 CTCF 1\ subGroups cellType=A549 factor=CTCF\ track encTfChipPkENCFF535MZG\ unipModif AA Modifications bigBed 12 + UniProt Amino Acid Modifications 1 9 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipModif.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Amino Acid Modifications\ mouseOver UniProt record: $uniProtIdPosition: $position
UniProt status: $status\ parent uniprot\ priority 9\ shortLabel AA Modifications\ track unipModif\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#aaMod_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ cloneEndABC21 ABC21 bed 12 Agencourt fosmid library 21 0 9 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 21\ parent cloneEndSuper off\ priority 9\ shortLabel ABC21\ subGroups source=agencourt\ track cloneEndABC21\ type bed 12\ visibility hide\ wgEncodeReg4AtacAllAdipose Adipose (all biosamples) bigWig Avg. ATAC level of 3 adipose experiments (all biosamples) 0 9 255 119 39 255 187 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/adiposeATAC.bw\ color 255,119,39\ longLabel Avg. ATAC level of 3 adipose experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 9\ shortLabel Adipose (all biosamples)\ track wgEncodeReg4AtacAllAdipose\ type bigWig\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_fwd AorticSmsToFgf2_00hr15minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward 0 9 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_fwd AorticSmsToFgf2_00hr15minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward 1 9 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr15min%2c%20biol_rep3%20%28LK6%29.CNhs13568.12839-137B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr15min, biol_rep3 (LK6)_CNhs13568_12839-137B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12839-137B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr15minBiolRep3LK6_CNhs13568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12839-137B4\ urlLabel FANTOM5 Details:\ bismap24Quantitative Bismap M24 bigWig 0.041667 1.0 Multi-read mappability with 24-mers after bisulfite conversion 2 9 240 20 80 247 137 167 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k24.Bismap.MultiTrackMappability.bw\ color 240,20,80\ longLabel Multi-read mappability with 24-mers after bisulfite conversion\ parent bismapBigWig on\ priority 9\ shortLabel Bismap M24\ subGroups view=MR\ track bismap24Quantitative\ type bigWig 0.041667 1.0\ visibility full\ wgEncodeReg4TxnBrainPlus Brain + bigWig Avg. + strand total RNA-seq level of 127 brain experiments (tissues and primary cells only) 0 9 155 155 18 205 205 136 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpBrainPlus.bw\ color 155,155,18\ longLabel Avg. + strand total RNA-seq level of 127 brain experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn\ priority 9\ shortLabel Brain +\ track wgEncodeReg4TxnBrainPlus\ type bigWig\ gtexCovBrainAnteriorcingulatecortexBA24 Brain Ant cin cort bigWig Brain Anterior cingulate cortex BA24 0 9 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14PN4-0011-R3b-SM-686ZU.Brain_Anterior_cingulate_cortex_BA24.RNAseq.bw\ color 238,238,0\ longLabel Brain Anterior cingulate cortex BA24\ parent gtexCov\ shortLabel Brain Ant cin cort\ track gtexCovBrainAnteriorcingulatecortexBA24\ vertebrateChainNetViewchain Chains bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 3 9 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ parent vertebrateChainNet\ shortLabel Chains\ spectrum on\ track vertebrateChainNetViewchain\ view chain\ visibility pack\ cortexNeuron42M Cortex - Neuron - Z0000042M bigWig Methylation Atlas: Cortex - Neuron - Z0000042M 2 9 138 43 226 196 149 240 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/cortexNeuron42M.bw\ color 138,43,226\ longLabel Methylation Atlas: Cortex - Neuron - Z0000042M\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 9\ shortLabel Cortex - Neuron - Z0000042M\ subGroups cellType=Neuron dataType=Replicate\ track cortexNeuron42M\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF969JHD_ENCFF308GJB_ENCFF341LLL_ENCFF398MEO ENCFF969JHD_ENCFF308GJB_ENCFF341LLL_ENCFF398MEO bigBed 9 + 5 DND-41: (1) cCREs 4 9 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF969JHD_ENCFF308GJB_ENCFF341LLL_ENCFF398MEO.bb\ longLabel DND-41: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 24\ shortLabel ENCFF969JHD_ENCFF308GJB_ENCFF341LLL_ENCFF398MEO\ subGroups organ=blood view=cCREs_view simpleBiosample=DND-41 biosampleType=cell_line donor=ENCDO183AAA dataType=typeCcres\ track ENCFF969JHD_ENCFF308GJB_ENCFF341LLL_ENCFF398MEO\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF073UEV ENCSR000AAE + strand bigWig Bronchial smooth muscle cell male adult (52 years) and male adult (59 years) + strand total RNA-seq signal 2 9 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/f1c457a0-906e-4d54-bca3-85b63198e2e9/ENCFF073UEV.bigWig\ color 130,163,45\ longLabel Bronchial smooth muscle cell male adult (52 years) and male adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAE + strand\ track wgEncodeReg4RnaSeq_ENCFF073UEV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF947JAB ENCSR000ALA Peak bigBed 5 Endothelial cell of umbilical vein male newborn CTCF peaks 4 9 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a4d1978d-093c-4082-bc8d-9c390d06d768/ENCFF947JAB.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein male newborn CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ALA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF947JAB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF194WGG ENCSR000ALB Peak bigBed 5 Endothelial cell of umbilical vein male newborn H3K27ac peak 4 9 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/edc1e7d2-5d24-49f8-a890-4956bb61d7f8/ENCFF194WGG.bigBed\ color 181,145,0\ longLabel Endothelial cell of umbilical vein male newborn H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALB Peak\ track wgEncodeReg4Epigenetics_ENCFF194WGG\ type bigBed 5\ visibility squish\ ESCA ESCA bigLolly 12 + Esophageal carcinoma 0 9 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/ESCA.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Esophageal carcinoma\ parent gdcCancer off\ priority 9\ shortLabel ESCA\ track ESCA\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4DnaseEye Eye bigWig Avg. DNase level of 8 eye experiments (tissues and primary cells only) 0 9 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEyeDNase.bw\ color 163,127,144\ longLabel Avg. DNase level of 8 eye experiments (tissues and primary cells only)\ parent wgEncodeReg4Dnase off\ priority 9\ shortLabel Eye\ track wgEncodeReg4DnaseEye\ type bigWig\ ga4kSnv GA4K 552 PacBio LR vcfTabix SNV Frequencies: GA4K Children's Mercy - 552 PacBio HiFi WGS, pediatric RD 0 9 0 0 0 127 127 127 0 0 0
Description
\\ This track shows small variants (single-nucleotide variants and short\ insertion/deletion variants) identified by PacBio HiFi long-read sequencing\ of probands and their families enrolled in the Genomic Answers for Kids\ (GA4K) program at Children's Mercy Research Institute. GA4K is a longitudinal\ pediatric genomics initiative that aims to enroll 30,000 children with\ suspected rare genetic disorders, together with their parents, to build a\ large-scale resource of clinical and genomic data.\
\\ The callset contains approximately 36.2 million variants genotyped across\ up to 552 samples (maximum allele number 1104 on the autosomes). Each\ variant is annotated with allele count (AC), total called alleles (AN),\ cohort allele frequency (AF), variant type (substitution, insertion or\ deletion), and the corresponding gnomAD v3.0 allele frequency if one is\ available.\
\ \Display Conventions and Configuration
\\ The track uses the standard VCF display. By default, variants appear as\ colored marks along the genome. Click an item to open its detail page,\ which lists the per-site INFO fields AC, AN, AF and the gnomAD v3 allele\ frequency.\
\ \Methods
\\ Samples were sequenced on PacBio Revio and Sequel II instruments with HiFi\ chemistry. Per-sample variant calls were generated with DeepVariant as gVCFs,\ then merged across the cohort with GLnexus v1.2.7 using the\ DeepVariant_unfiltered configuration. The resulting BCF was converted\ to VCF with bcftools view v1.10.\
\\ To reduce false positives, the merged callset was filtered to variants\ replicated by independent evidence: (1) observed in at least one additional\ unrelated Children's Mercy individual, or (2) matching a variant observed in\ a sample from the Human Pangenome Reference Consortium (HPRC).\
\\ The GA4K release ships as 24 per-chromosome VCF files (chr1-22, chrX,\ chrY). For the Genome Browser, these were concatenated with\ bcftools concat into a single bgzip-compressed, tabix-indexed file.\
\ \Data Access
\\ The VCF file for this track is available from\ our\ download server as ga4kSnv.vcf.gz (with .tbi index).\ Regions can be extracted with tabix, for example:\ tabix http://hgdownload.soe.ucsc.edu/gbdb/hg38/varFreqs/ga4k/ga4kSnv.vcf.gz chr21:1-100000000.\
\\ The original per-chromosome VCFs and full release documentation are\ available from the Children's Mercy Research Institute GA4K data release at\ \ github.com/ChildrensMercyResearchInstitute/GA4K.\
\ \Credits
\\ Thanks to the Children's Mercy Research Institute and the Genomic Answers\ for Kids participants and their families, who released this dataset to the\ public.\
\ \References
\ \ \\ Cohen ASA, Farrow EG, Abdelmoity AT, Alaimo JT, Amudhavalli SM, Anderson JT, Bansal L, Bartik L,\ Baybayan P, Belden B et al.\ \ Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes.\ Genet Med. 2022 Jun;24(6):1336-1348.\ PMID: 35305867\
\ \ varRep 1 bigDataUrl /gbdb/hg38/varFreqs/ga4k/ga4kSnv.vcf.gz\ dataVersion Cohen 2022 release\ longLabel SNV Frequencies: GA4K Children's Mercy - 552 PacBio HiFi WGS, pediatric RD\ parent varFreqs on\ priority 9\ shortLabel GA4K 552 PacBio LR\ track ga4kSnv\ type vcfTabix\ visibility hide\ wgEncodeRegDnaseUwHffPeak HFF Pk narrowPeak HFF foreskin fibroblast DNaseI Peaks from ENCODE 1 9 255 163 85 255 209 170 1 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HFF Pk\ subGroups view=a_Peaks cellType=HFF treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffPeak\ wgEncodeRegDnaseUwHffWig HFF Sg bigWig 0 17635.9 HFF foreskin fibroblast DNaseI Signal from ENCODE 0 9 255 163 85 255 209 170 0 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.0818\ shortLabel HFF Sg\ subGroups cellType=HFF treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwHffSignal\ track wgEncodeRegDnaseUwHffWig\ type bigWig 0 17635.9\ chainHprcGCA_018505825v1 HG02109.mat chain GCA_018505825.1 HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 9 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505825.1\ parent hprcChainNetViewchain off\ priority 25\ shortLabel HG02109.mat\ subGroups view=chain sample=s025 population=afr subpop=acb hap=mat\ track chainHprcGCA_018505825v1\ type chain GCA_018505825.1\ lincRNAsCThLF_r1 hLF_r1 bed 5 + lincRNAs from hlf_r1 1 9 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from hlf_r1\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel hLF_r1\ subGroups view=lincRNAsRefseqExp tissueType=hlf_r1\ track lincRNAsCThLF_r1\ wgEncodeReg4MarkH3k4me3Kidney Kidney bigWig Avg. H3K4me3 level of 5 kidney experiments (tissues and primary cells only) 0 9 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpKidneyH3K4me3.bw\ color 92,161,153\ longLabel Avg. H3K4me3 level of 5 kidney experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k4me3\ priority 9\ shortLabel Kidney\ track wgEncodeReg4MarkH3k4me3Kidney\ type bigWig\ wgEncodeReg4MarkH3k27acLargeIntestine Large intestine bigWig Avg. H3K27ac level of 18 large intestine experiments (tissues and primary cells only) 2 9 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLargeIntestineH3K27ac.bw\ color 86,86,36\ longLabel Avg. H3K27ac level of 18 large intestine experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k27ac off\ priority 9\ shortLabel Large intestine\ track wgEncodeReg4MarkH3k27acLargeIntestine\ type bigWig\ wgEncodeReg4MarkCtcfLiver Liver bigWig Avg. CTCF level of 2 liver experiments (tissues and primary cells only) 0 9 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLiverCTCF.bw\ color 137,152,82\ longLabel Avg. CTCF level of 2 liver experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkCtcf\ priority 9\ shortLabel Liver\ track wgEncodeReg4MarkCtcfLiver\ type bigWig\ vertebrateChainNetViewnet Nets bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 1 9 0 0 0 255 255 0 0 0 0 compGeno 1 longLabel Non-placental Vertebrate Genomes, Chain and Net Alignments\ parent vertebrateChainNet\ shortLabel Nets\ track vertebrateChainNetViewnet\ view net\ visibility dense\ wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled NHLF bigWig 0 65535 Transcription of NHLF cells from ENCODE 0 9 255 128 212 255 191 233 0 0 0 regulation 1 color 255,128,212\ longLabel Transcription of NHLF cells from ENCODE\ origAssembly hg19\ parent wgEncodeRegTxn\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ priority 9\ shortLabel NHLF\ track wgEncodeRegTxnCaltechRnaSeqNhlfR2x75Il200SigPooled\ type bigWig 0 65535\ iscaPathGainCum Path Gain bedGraph 4 ClinGen CNVs: Pathogenic Gain Coverage 2 9 0 0 200 127 127 227 0 0 0 phenDis 0 color 0,0,200\ longLabel ClinGen CNVs: Pathogenic Gain Coverage\ parent iscaViewTotal\ shortLabel Path Gain\ subGroups view=cov class=path level=sub\ track iscaPathGainCum\ ncbiRefSeqHgmd RefSeq HGMD genePred NCBI RefSeq HGMD subset: transcripts with clinical variants in HGMD 1 9 20 20 160 137 137 207 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 20,20,160\ idXref ncbiRefSeqLink mrnaAcc name\ longLabel NCBI RefSeq HGMD subset: transcripts with clinical variants in HGMD\ parent refSeqComposite off\ priority 9\ shortLabel RefSeq HGMD\ track ncbiRefSeqHgmd\ trackHandler ncbiRefSeq\ type genePred\ ncbiRefSeqHistorical RefSeq Historical genePred NCBI RefSeq Historical Transcript Versions 1 9 12 12 120 133 133 187 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 12,12,120\ idXref ncbiRefSeqLinkHistorical mrnaAcc name\ longLabel NCBI RefSeq Historical Transcript Versions\ parent refSeqComposite off\ priority 9\ shortLabel RefSeq Historical\ track ncbiRefSeqHistorical\ type genePred\ gnomad3100XPercentage Sample % > 100X bigWig gnomAD Percentage of Genome Samples with at least 100X Coverage v3.0.1 2 9 15 0 240 135 127 247 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v3-genome/gnomad.coverage.over_100.bw\ color 15,0,240\ longLabel gnomAD Percentage of Genome Samples with at least 100X Coverage v3.0.1\ parent gnomad3Coverage off\ priority 9\ shortLabel Sample % > 100X\ track gnomad3100XPercentage\ viewLimits 0:1\ gnomad4Exome100XPercentage Sample % > 100X bigWig gnomAD Percentage of Exome Samples with at least 100X Coverage v4.0 2 9 15 0 240 135 127 247 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/coverage/v4-exome/gnomad.coverage.over_100.bw\ color 15,0,240\ longLabel gnomAD Percentage of Exome Samples with at least 100X Coverage v4.0\ parent gnomad4ExomeCoverage off\ priority 9\ shortLabel Sample % > 100X\ track gnomad4Exome100XPercentage\ viewLimits 0:1\ SeqCap-EZ_MedExomePlusMito_hg19_capture_targets SeqCap EZ Med+Mito P bigBed Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint 0 9 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg38_capture_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome + Mito Capture Probe Footprint\ parent exomeProbesets on\ shortLabel SeqCap EZ Med+Mito P\ track SeqCap-EZ_MedExomePlusMito_hg19_capture_targets\ type bigBed\ ultraZoo UltraZoos bigBed 3 UltraZoos: 4552 Ultraconserved regions in Zoonomia alignment - 100% identical in 235 species, >20bp 0 9 0 0 0 127 127 127 0 0 0 compGeno 1 bigDataUrl /gbdb/hg38/unusualcons/zooUCEs.bigBed\ longLabel UltraZoos: 4552 Ultraconserved regions in Zoonomia alignment - 100% identical in 235 species, >20bp\ parent unusualcons on\ shortLabel UltraZoos\ track ultraZoo\ type bigBed 3\ vertebrateChainNet Vertebrate Chain/Net bed 3 Non-placental Vertebrate Genomes, Chain and Net Alignments 0 9 0 0 0 255 255 0 0 0 0Description
\Chain Track
\\ The chain track shows alignments of human (Dec. 2013 (GRCh38/hg38)) to\ other genomes using a gap scoring system that allows longer gaps \ than traditional affine gap scoring systems. It can also tolerate gaps in both\ human and the other genome simultaneously. These \ "double-sided" gaps can be caused by local inversions and \ overlapping deletions in both species. \
\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ other assembly or an insertion in the human assembly.\ Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the other genome, the chains with single-lined gaps are often \ due to processed pseudogenes, while chains with double-lined gaps are more \ often due to paralogs and unprocessed pseudogenes.
\\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.
\ \Net Track
\\ The net track shows the best human/other chain for \ every part of the other genome. It is useful for\ finding orthologous regions and for studying genome\ rearrangement. The human sequence used in this annotation is from\ the Dec. 2013 (GRCh38/hg38) assembly.
\ \Display Conventions and Configuration
\Chain Track
\By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.
\\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to: \ Filter by chromosome.
\ \Net Track
\\ In full display mode, the top-level (level 1)\ chains are the largest, highest-scoring chains that\ span this region. In many cases gaps exist in the\ top-level chain. When possible, these are filled in by\ other chains that are displayed at level 2. The gaps in \ level 2 chains may be filled by level 3 chains and so\ forth.
\\ In the graphical display, the boxes represent ungapped \ alignments; the lines represent gaps. Click\ on a box to view detailed information about the chain\ as a whole; click on a line to display information\ about the gap. The detailed information is useful in determining\ the cause of the gap or, for lower level chains, the genomic\ rearrangement.
\\ Individual items in the display are categorized as one of four types\ (other than gap):
\- \
- Top - the best, longest match. Displayed on level 1.\
- Syn - line-ups on the same chromosome as the gap in the level above\ it.\
- Inv - a line-up on the same chromosome as the gap above it, but in \ the opposite orientation.\
- NonSyn - a match to a chromosome different from the gap in the \ level above.\
Methods
\Chain track
\\ Transposons that have been inserted since the human/other\ split were removed from the assemblies. The abbreviated genomes were\ aligned with lastz, and the transposons were added back in.\ The resulting alignments were converted into axt format using the lavToAxt\ program. The axt alignments were fed into axtChain, which organizes all\ alignments between a single human chromosome and a single\ chromosome from the other genome into a group and creates a kd-tree out\ of the gapless subsections (blocks) of the alignments. A dynamic program\ was then run over the kd-trees to find the maximally scoring chains of these\ blocks.\ \
\ \ For the Wallaby alignment, chains scoring below a minimum score\ of '3000' were discarded; the remaining chains are displayed in this track.\ The linear gap matrix used with axtChain:\
\ \
\ The following lastz matrix was used\ \
for the alignments to: Wallaby, Tasmanian Devil\ \\
\ A C G T \ A 91 -114 -31 -123 \ \ C -114 100 -125 -31 \ G -31 -125 100 -114 \ T -123 -31 -114 91 \ \
\ The following lastz matrix was used\
for the alignments to: American Alligator, Medium Ground Finch,
\ Opossum, Platypus, Chicken, Zebra Finch, Lizard, X. tropicalis,
\ Stickleback, Fugu, Zebrafish, Tetraodon, Medaka, Lamprey\ \\
\ A C G T \ A 91 -90 -25 -100 \ C -90 100 -100 -25 \ G -25 -100 100 -90 \ T -100 -25 -90 91
\ \
-linearGap=medium\ \ tableSize 11\ smallSize 111\ position 1 2 3 11 111 2111 12111 32111 72111 152111 252111\ qGap 350 425 450 600 900 2900 22900 57900 117900 217900 317900\ tGap 350 425 450 600 900 2900 22900 57900 117900 217900 317900\ bothGap 750 825 850 1000 1300 3300 23300 58300 118300 218300 318300\\ \ For the alignments to: American Alligator, Medium Ground Finch, Tasmanian Devil, Opossum, Platypus, Chicken,\ Zebra Finch, Lizard, X. tropicalis, Stickleback, Fugu, Zebrafish, Tetraodon,\ Medaka and Lamprey, chains scoring below a minimum score\ of '5000' were discarded; the remaining chains are displayed\ in this track. The linear gap matrix used with axtChain:
\ \
-linearGap=loose\ \ tablesize 11\ smallSize 111\ position 1 2 3 11 111 2111 12111 32111 72111 152111 252111\ qGap 325 360 400 450 600 1100 3600 7600 15600 31600 56600\ tGap 325 360 400 450 600 1100 3600 7600 15600 31600 56600\ bothGap 625 660 700 750 900 1400 4000 8000 16000 32000 57000\\ \ See also: lastz parameters used in these alignments,\ and chain minimum score and gap parameters used in these alignments.\ \ \
Net track
\\ Chains were derived from lastz alignments, using the methods\ described on the chain tracks description pages, and sorted with the \ highest-scoring chains in the genome ranked first. The program\ chainNet was then used to place the chains one at a time, trimming them as \ necessary to fit into sections not already covered by a higher-scoring chain. \ During this process, a natural hierarchy emerged in which a chain that filled \ a gap in a higher-scoring chain was placed underneath that chain. The program \ netSyntenic was used to fill in information about the relationship between \ higher- and lower-level chains, such as whether a lower-level\ chain was syntenic or inverted relative to the higher-level chain. \ The program netClass was then used to fill in how much of the gaps and chains \ contained Ns (sequencing gaps) in one or both species and how much\ was filled with transposons inserted before and after the two organisms \ diverged.
\ \Credits
\\ LASTZ was developed at\ Miller Lab at Pennsylvania State University by \ Bob Harris.\
\\ Lineage-specific repeats were identified by Arian Smit and his \ RepeatMasker\ program.
\\ The axtChain program was developed at the University of California at \ Santa Cruz by Jim Kent with advice from Webb Miller and David Haussler.
\\ The browser display and database storage of the chains and nets were created\ by Robert Baertsch and Jim Kent.
\\ The chainNet, netSyntenic, and netClass programs were\ developed at the University of California\ Santa Cruz by Jim Kent.
\\ \
References
\\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\
\ \\ Chiaromonte F, Yap VB, Miller W.\ Scoring pairwise genomic sequence alignments.\ Pac Symp Biocomput. 2002:115-26.\ PMID: 11928468\
\ \\
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\
Evolution's cauldron:\
duplication, deletion, and rearrangement in the mouse and human genomes.\
Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\
PMID: 14500911; PMC:
\
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC,\
Haussler D, Miller W.\
Human-mouse alignments with BLASTZ.\
Genome Res. 2003 Jan;13(1):103-7.\
PMID: 12529312; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 118\ shortLabel ENCFF136RNO_ENCFF630BQS_ENCFF611XLA_ENCFF975BGM\ subGroups organ=blood view=cCREs_view simpleBiosample=OCI-LY7 biosampleType=cell_line donor=ENCDO351AAA dataType=typeCcres\ track ENCFF136RNO_ENCFF630BQS_ENCFF611XLA_ENCFF975BGM\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF368QGM ENCSR000AAE - strand bigWig Bronchial smooth muscle cell male adult (52 years) and male adult (59 years) - strand total RNA-seq signal 2 10 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/802cf33f-590a-4528-afc4-98b9b37de2b8/ENCFF368QGM.bigWig\ color 130,163,45\ longLabel Bronchial smooth muscle cell male adult (52 years) and male adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAE - strand\ track wgEncodeReg4RnaSeq_ENCFF368QGM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF334OZC ENCSR000ALA Signal bigWig Endothelial cell of umbilical vein male newborn CTCF ENCSR000ALA signal 2 10 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d2c7d617-dcc1-45d5-a069-dfc8c38e902e/ENCFF334OZC.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein male newborn CTCF ENCSR000ALA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ALA Signal\ track wgEncodeReg4TfChip_ENCFF334OZC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF955PAU ENCSR000ALB Signal bigWig Endothelial cell of umbilical vein male newborn H3K27ac signal 2 10 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/28cced5b-2fb9-4073-8125-0d61d056df18/ENCFF955PAU.bigWig\ color 181,145,0\ longLabel Endothelial cell of umbilical vein male newborn H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALB Signal\ track wgEncodeReg4Epigenetics_ENCFF955PAU\ type bigWig\ visibility full\ GBM GBM bigLolly 12 + Glioblastoma multiforme 0 10 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/GBM.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Glioblastoma multiforme\ parent gdcCancer off\ priority 10\ shortLabel GBM\ track GBM\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ gaspIndel GenomeAsia 1.7k Indels vcfTabix SNV Frequencies: GenomeAsia Pilot - Indels 0 10 0 0 0 127 127 127 0 0 0
Description
\\ The GenomeAsia 100K project aims\ to sequence 100,000 Asian individuals. This pilot release (GAsP) contains whole-genome sequencing\ data of 1,739 individuals from 219 population groups across Asia. Frequencies are broken down by\ Northeast Asian, Southeast Asian, and South Asian ancestry groups. The data is split into two\ subtracks: substitutions and indels.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is gasp.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original VCFs are also available from the\ GenomeAsia 100K\ website. No license nor login is required.\
\ \Methods
\\ Samples were sequenced on Illumina HiSeq 2500, HiSeq 4000, and HiSeq X Ten instruments with\ 2×100 bp or 2×150 bp paired-end reads at an average depth of 36x. Reads were aligned to\ GRCh37 using BWA-MEM. Duplicate reads were marked with SAMBLASTER and sorted with Sambamba.\ Per-sample variant calling was performed with GATK HaplotypeCaller in GVCF mode, followed by\ joint genotyping with GenotypeGVCFs. Variant quality score recalibration (VQSR) was applied at\ a 99% sensitivity tranche for both SNPs and indels. Sample-level QC included contamination\ checks with verifyBamID and sex concordance verification. The final callset contains\ ∼65 million variants across 1,739 individuals from 219 populations.\
\\ The upstream callset is on GRCh37. We lifted it to hg38 using\ CrossMap and the UCSC\ hg19ToHg38 chain file. After lifting, variants that landed on alt, random, fix, or\ unplaced contigs were dropped, and the result was sorted and indexed with tabix.\
\\ The makeDoc file documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were needed and are also available from GitHub.\
\ \References
\\
GenomeAsia100K Consortium.\
\
The GenomeAsia 100K Project enables genetic discoveries across Asia.\
Nature. 2019 Dec;576(7785):106-111.\
PMID: 31802016; PMC:
Description
\GnomAD Genome Mutational Constraint, also known as "Genome non-coding constraint of\ haploinsufficient variation (Gnocchi)", is based on v3.1.2 and is available only on hg38.\ It shows the reduced variation caused by purifying\ natural selection. This is similar to negative selection on loss-of-function\ (LoF) for genes, but can be calculated for non-coding regions too.\ Positive values are red and reflect stronger mutation constraint (and less variation), indicating\ higher natural selection pressure in a region. Negative values are green and\ reflect lower mutation constraint\ (and more variation), indicating less selection pressure and less functional effect.\ Briefly, for any 1kbp window in\ the genome, a model based on trinucleotide sequence context, base-level\ methylation, and regional genomic features predicts expected number of mutations,\ and compares this number to the observed number of mutations using a Z-score (see Chen et al 2024\ in the Reference section for details). The chrX scores were added as received from the authors,\ as there are no de novo mutation data available on chrX (for estimating the effects of regional\ genomic features on mutation rates), they are more speculative than the ones on the autosomes.
\ \Data Access
\\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
The mutational constraints score was updated in October 2022 from a previous,\ now deprecated, pre-publication version. The old version can be found in our\ archive\ directory on the download server. It can be loaded by copying the URL into\ our "Custom tracks" input box.
\ \\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\ varRep 0 altColor 0,150,0\ autoScale on\ bigDataUrl /gbdb/hg38/gnomAD/mutConstraint/mutConstraint.bw\ color 150,0,0\ dataVersion Release 3.1.2 (October 22, 2021)\ html gnomadConstraint\ longLabel Gnocchi: Genome Aggregation Database (gnomAD) non-coding constraint of haploinsufficient variation, includes chrX\ maxHeightPixels 128:40:8\ parent gnomadVariants on\ priority 10\ setColorWith /gbdb/hg38/gnomAD/mutConstraint/mutConstraint.color.bb\ shortLabel gnomAD Mut Constraint\ track gnomadConstraint\ type bigWig\ viewLimitsMax -3:3\ windowingFunction minimum\ wgEncodeReg4DnaseHeart Heart bigWig Avg. DNase level of 53 heart experiments (tissues and primary cells only) 0 10 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpHeartDNase.bw\ color 116,50,165\ longLabel Avg. DNase level of 53 heart experiments (tissues and primary cells only)\ parent wgEncodeReg4Dnase off\ priority 10\ shortLabel Heart\ track wgEncodeReg4DnaseHeart\ type bigWig\ wgEncodeRegDnaseUwHffmycPeak HFF-Myc Pk narrowPeak HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Peaks from ENCODE 1 10 255 165 85 255 210 170 1 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HFF-Myc Pk\ subGroups view=a_Peaks cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffmycPeak\ wgEncodeRegDnaseUwHffmycWig HFF-Myc Sg bigWig 0 23416.2 HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE 0 10 255 165 85 255 210 170 0 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.08427\ shortLabel HFF-Myc Sg\ subGroups cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwHffmycSignal\ track wgEncodeRegDnaseUwHffmycWig\ type bigWig 0 23416.2\ netHprcGCA_018505825v1 HG02109.mat netAlign GCA_018505825.1 chainHprcGCA_018505825v1 HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chain Nets 1 10 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02109.mat HG02109.pri.mat.f1_v2 (May 2021 GCA_018505825.1_HG02109.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505825.1\ parent hprcChainNetViewnet off\ priority 25\ shortLabel HG02109.mat\ subGroups view=net sample=s025 population=afr subpop=acb hap=mat\ track netHprcGCA_018505825v1\ type netAlign GCA_018505825.1 chainHprcGCA_018505825v1\ lincRNAsCThLF_r2 hLF_r2 bed 5 + lincRNAs from hlf_r2 1 10 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from hlf_r2\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel hLF_r2\ subGroups view=lincRNAsRefseqExp tissueType=hlf_r2\ track lincRNAsCThLF_r2\ wgEncodeReg4MarkH3k4me3LargeIntestine Large intestine bigWig Avg. H3K4me3 level of 20 large intestine experiments (tissues and primary cells only) 0 10 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLargeIntestineH3K4me3.bw\ color 86,86,36\ longLabel Avg. H3K4me3 level of 20 large intestine experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 10\ shortLabel Large intestine\ track wgEncodeReg4MarkH3k4me3LargeIntestine\ type bigWig\ wgEncodeReg4MarkH3k27acLiver Liver bigWig Avg. H3K27ac level of 4 liver experiments (tissues and primary cells only) 2 10 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLiverH3K27ac.bw\ color 137,152,82\ longLabel Avg. H3K27ac level of 4 liver experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k27ac\ priority 10\ shortLabel Liver\ track wgEncodeReg4MarkH3k27acLiver\ type bigWig\ wgEncodeReg4MarkCtcfLung Lung bigWig Avg. CTCF level of 13 lung experiments (tissues and primary cells only) 0 10 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLungCTCF.bw\ color 130,163,45\ longLabel Avg. CTCF level of 13 lung experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkCtcf off\ priority 10\ shortLabel Lung\ track wgEncodeReg4MarkCtcfLung\ type bigWig\ unipMut Mutations bigBed 12 + UniProt Amino Acid Mutations 1 10 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipMut.bb\ longLabel UniProt Amino Acid Mutations\ mouseOver UniProt record: $uniProtIdUniProt variant: $variationId
UniProt status: $status\ parent uniprot\ priority 10\ shortLabel Mutations\ track unipMut\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#pathology_and_biotech" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$" variationId="http://www.uniprot.org/uniprot/$$"\ visibility dense\ ncbiOrtho NCBI Orthologs bigBed 9 + NCBI Gene Orthologs 0 10 136 0 204 195 127 229 0 0 0 genes 1 bigDataUrl /gbdb/hg38/ncbiOrtho/ncbiOrtho.bb\ color 136,0,204\ defaultLabelFields hugo\ labelFields hugo,name\ longLabel NCBI Gene Orthologs\ mouseOver $url\ parent refSeqComposite off\ priority 10\ searchIndex hugo,name\ searchTrix /gbdb/hg38/ncbiOrtho/ncbiOrtho.ix\ shortLabel NCBI Orthologs\ track ncbiOrtho\ type bigBed 9 +\ visibility hide\ iscaPathLossCum Path Loss bedGraph 4 ClinGen CNVs: Pathogenic Loss Coverage 2 10 200 0 0 227 127 127 0 0 0 phenDis 0 color 200,0,0\ longLabel ClinGen CNVs: Pathogenic Loss Coverage\ parent iscaViewTotal\ shortLabel Path Loss\ subGroups view=cov class=path level=sub\ track iscaPathLossCum\ SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets SeqCap EZ Med+Mito T bigBed Roche - SeqCap EZ MedExome + Mito Empirical Target Regions 0 10 100 143 255 177 199 255 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/SeqCap_EZ_MedExomePlusMito_hg38_empirical_targets.bb\ color 100,143,255\ longLabel Roche - SeqCap EZ MedExome + Mito Empirical Target Regions\ parent exomeProbesets on\ shortLabel SeqCap EZ Med+Mito T\ track SeqCap-EZ_MedExomePlusMito_hg19_empirical_targets\ type bigBed\ hars312 ZooHARs bigBed 4 ZooHARs: 312 Human Accelerated Regions (HARs) from Zoonomia alignments 0 10 0 0 0 127 127 127 0 0 0 compGeno 1 bigDataUrl /gbdb/hg38/unusualcons/KeoughTableS1.bb\ longLabel ZooHARs: 312 Human Accelerated Regions (HARs) from Zoonomia alignments\ parent unusualcons on\ shortLabel ZooHARs\ track hars312\ type bigBed 4\ transMapEnsemblV5 TransMap Ensembl bigPsl TransMap Ensembl and GENCODE Mappings Version 5 3 10.001 0 100 0 127 177 127 0 0 0
Description
\ \\ This track contains GENCODE or Ensembl alignments produced by\ the TransMap cross-species alignment algorithm from other vertebrate\ species in the UCSC Genome Browser. GENCODE is Ensembl for human and mouse,\ for other Ensembl sources, only ones with full gene builds are used.\ Projection Ensembl gene annotations will not be used as sources.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\
\ \ \Display Conventions and Configuration
\ \\ This track follows the display conventions for \ PSL alignment tracks.
\\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \
Methods
\ \\
- \
- Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
- For all vertebrate assemblies that had BLASTZ alignment chains and\
nets to the human (hg38) genome, a subset of the alignment chains were\
selected as follows:\
- \
- For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
- For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
- The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
- The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\
\ accession.version-srcUniq.destUniq\\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\ \
\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\
\ \Data Access
\ \\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\
- \
- TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl \
- TransMap RefGene - hg38.refseq.transMapV4.bigPsl \
- TransMap RNA - hg38.rna.transMapV4.bigPsl \
- TransMap ESTs - hg38.est.transMapV4.bigPsl \
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \
Credits
\ \\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.
\ \References
\\
Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\
Lau C et al.\
\
Targeted discovery of novel human exons by comparative genomics.\
Genome Res. 2007 Dec;17(12):1763-73.\
PMID: 17989246; PMC:
\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\
\ \\
Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\
\
Comparative genomics search for losses of long-established genes on the human lineage.\
PLoS Comput Biol. 2007 Dec;3(12):e247.\
PMID: 18085818; PMC:
Description
\ \\ This track contains RefSeq Gene alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\
\ \ \Display Conventions and Configuration
\ \\ This track follows the display conventions for \ PSL alignment tracks.
\\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \
Methods
\ \\
- \
- Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
- For all vertebrate assemblies that had BLASTZ alignment chains and\
nets to the human (hg38) genome, a subset of the alignment chains were\
selected as follows:\
- \
- For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
- For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
- The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
- The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\
\ accession.version-srcUniq.destUniq\\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\ \
\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\
\ \Data Access
\ \\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\
- \
- TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl \
- TransMap RefGene - hg38.refseq.transMapV4.bigPsl \
- TransMap RNA - hg38.rna.transMapV4.bigPsl \
- TransMap ESTs - hg38.est.transMapV4.bigPsl \
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \
Credits
\ \\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.
\ \References
\\
Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\
Lau C et al.\
\
Targeted discovery of novel human exons by comparative genomics.\
Genome Res. 2007 Dec;17(12):1763-73.\
PMID: 17989246; PMC:
\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\
\ \\
Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\
\
Comparative genomics search for losses of long-established genes on the human lineage.\
PLoS Comput Biol. 2007 Dec;3(12):e247.\
PMID: 18085818; PMC:
Description
\ \\ This track contains GenBank mRNA alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\
\ \ \Display Conventions and Configuration
\ \\ This track follows the display conventions for \ PSL alignment tracks.
\\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \
Methods
\ \\
- \
- Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
- For all vertebrate assemblies that had BLASTZ alignment chains and\
nets to the human (hg38) genome, a subset of the alignment chains were\
selected as follows:\
- \
- For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
- For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
- The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
- The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\
\ accession.version-srcUniq.destUniq\\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\ \
\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\
\ \Data Access
\ \\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\
- \
- TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl \
- TransMap RefGene - hg38.refseq.transMapV4.bigPsl \
- TransMap RNA - hg38.rna.transMapV4.bigPsl \
- TransMap ESTs - hg38.est.transMapV4.bigPsl \
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \
Credits
\ \\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.
\ \References
\\
Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\
Lau C et al.\
\
Targeted discovery of novel human exons by comparative genomics.\
Genome Res. 2007 Dec;17(12):1763-73.\
PMID: 17989246; PMC:
\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\
\ \\
Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\
\
Comparative genomics search for losses of long-established genes on the human lineage.\
PLoS Comput Biol. 2007 Dec;3(12):e247.\
PMID: 18085818; PMC:
Description
\ \\ This track contains GenBank spliced EST alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered BLASTZ alignment chains, resulting in a prediction of the\ orthologous genes in human.\
\ \ \Display Conventions and Configuration
\ \\ This track follows the display conventions for \ PSL alignment tracks.
\\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \
Methods
\ \\
- \
- Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
- For all vertebrate assemblies that had BLASTZ alignment chains and\
nets to the human (hg38) genome, a subset of the alignment chains were\
selected as follows:\
- \
- For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
- For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
- The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
- The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\
\ accession.version-srcUniq.destUniq\\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\ \
\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\
\ \Data Access
\ \\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\
- \
- TransMap Ensembl - hg38.ensembl.transMapV4.bigPsl \
- TransMap RefGene - hg38.refseq.transMapV4.bigPsl \
- TransMap RNA - hg38.rna.transMapV4.bigPsl \
- TransMap ESTs - hg38.est.transMapV4.bigPsl \
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V4/hg38.refseq.transMapV4.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \
Credits
\ \\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.
\ \References
\\
Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\
Lau C et al.\
\
Targeted discovery of novel human exons by comparative genomics.\
Genome Res. 2007 Dec;17(12):1763-73.\
PMID: 17989246; PMC:
\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\
\ \\
Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\
\
Comparative genomics search for losses of long-established genes on the human lineage.\
PLoS Comput Biol. 2007 Dec;3(12):e247.\
PMID: 18085818; PMC:
Description
\\ The\ \ NIH Genotype-Tissue Expression (GTEx) project\ determined genetic variation and gene expression in 52 tissues and 2 cell lines\ using RNA-seq data (V8, August 2019), on 17,382 samples from 948 adults.\ This track focuses on the gene expression part. It shows read coverage, from one\ single sample per tissue, selected for high-quality and high read depth.\ The data is summarized to one number per base pair, the number of sequencing\ reads that cover this position. The plot allows finding out if a given exon is\ transcribed primarily in certain tissues and also whether transcription is\ uniform over the length of a single exon.\
\ \Display Conventions
\\ This track follows the display conventions for composite \ "wiggle" tracks. The subtracks, one per tissue, of this track \ may be configured in a variety of ways to highlight different aspects of the \ displayed data. The graphical configuration options are shown at the top of \ the track description page, followed by a list of subtracks. To display only \ selected subtracks, uncheck the boxes next to the tracks you wish to hide. \ For more information about the graphical configuration options, click the \ Graph\ configuration help link.
\ Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\ \ \ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the absolute\ read count.\ \ \Methods
\For background information about GTEx sample selection, see our \ GTEx gene expression\ track. In short, samples were sequenced with the Illumina TrueSeq protocol\ on unstranded polyA+ librarires to obtain 76-bp paired end reads with\ HiSeq 2000 and 2500 machines.
\ \\ Sequence reads were aligned to the hg38/GRCh38 human genome using STAR v2.5.3a\ and the GENCODE 26 transcriptome. \ The alignment pipeline is available\ here.\ For further method details, see the \ \ GTEx Portal Documentation page.\
\ \\ To obtain read coverage, the GTEx Laboratory, Data Analysis and Coordinating\ Center (LDACC) at the Broad Institute decided to select a single, high-quality\ representative sample for each tissue type, since aggregated tracks may\ obscure certain features or even introduce some artifacts (e.g. intronic\ coverage). For each tissue, the selected sample has the highest RIN value with\ a high coverage (>80M reads) and exonic rate (>85%). \ The alignment-to-coverage pipeline is available from Github:\ Python script,\ Docker file and \ Pipeline WDL description. \
\To show the exact GTEx sample that was used for each tissue,\ click the "Schema" link on the track configuration page (above), the filename\ under "bigDataUrl" includes the identifier.
\ \Subject and Sample Characteristics
\\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.
\ \Data Access
\\ The raw data for the GTEx Read Coverage track can be accessed interactively through the \ Table Browser.\
\ \ For automated analysis and downloads, the track data files can be downloaded from \ our downloads server\ or the JSON API.\ Individual regions or the whole genome annotation can be accessed as text using our utility\bigBedToBed. Instructions for downloading the utility can be found \
here. \
That utility can also be used to obtain features within a given range, e.g. \
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gtex/gtexGeneV8.bb -chrom=chr21\
-start=0 -end=100000000 stdout\
\ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets
\ \Credits
\\ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.
\ \References
\\ GTEx Consortium.\ \ The GTEx Consortium atlas of genetic regulatory effects across human tissues.\ Science. 2020 Sep 11;369(6509):1318-1330.\ PMID: 32913098;\ PMC: PMC7737656
\ \ \\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069
\ \\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, \ Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181
\ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC:\
DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\
\
RNA-SeQC: RNA-seq metrics for quality control and process optimization.\
Bioinformatics. 2012 Jun 1;28(11):1530-2.\
PMID: 22539670; PMC:
Description
\ \\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\
\ \Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\
\ \ The algorithms included in this track are:\- \
- \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
- \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
- \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
- \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ and this score only covers coding regions so gnomAD 2 was more appropriate.\ \
- \ LINSIGHT (hg19 only):\ LINSIGHT is a statistical model for estimating negative selection on\ noncoding sequences in the human genome. The LINSIGHT score measures the\ probability of negative selection on non-coding sites which can be used to\ prioritize SNVs associated with genetic diseases or quantify evolutionary\ constraint on regulatory sequences, e.g., enhancers or promoters. More\ specifically, if a non-coding site is under negative selection, it will be\ less likely to have a substitution or SNV in the human lineage. In\ addition, even if we see a SNV at the site, it will tend to segregate at\ low frequency because of selection. See (Huang et al, Nat Genet 2017).\ \
- \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
Display Conventions and Configuration
\ \JARVIS
\\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.
\ See hg19 makeDoc and\ hg38 makeDoc.\\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.
\ \\
| Percentile | JARVIS score threshold |
|---|---|
| 99th | 0.9998 |
| 95th | 0.9826 |
| 90th | 0.7338 |
HMC
\\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.
\\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\
\ \MetaDome
\ \ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.\\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.
\ \\
| Classification | MetaDome Tolerance Score |
|---|---|
| Highly intolerant | ≤ 0.175 |
| Intolerant | ≤ 0.525 |
| Slightly intolerant | ≤ 0.7 |
MTR
\\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.
\ \Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:
\- \
- Green items MTR percentiles over 75\
- Black items MTR percentiles between 25 and 75\
- Red items MTR percentiles below 25\
- Blue items No MTR score\
\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.
\ \Methods
\ \JARVIS
\\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\
\ \HMC
\\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.
\ \MetaDome
\\
The authors provided a bed file containing codon coordinates along with the scores. \
This file was parsed with a python script to create the two tracks. For the first track\
the scores were aggregated for each coordinate, then the lowest score chosen for any\
overlaps and the result written out to bedGraph format. The file was then converted\
to bigWig with the bedGraphToBigWig utility. For the second track the file\
was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\
utility.
\ See the hg19 makeDoc for details including the build script.
\\ The raw MetaDome data can also be accessed via their Zenodo handle.
\ \MTR
\\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.
\\ See the hg19 makeDoc entry on MTR for more info.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \ \Credits
\ \\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \
\ \ \References
\ \\
Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\
\
Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\
learning.\
Nat Commun. 2021 Mar 8;12(1):1504.\
PMID: 33686085; PMC:
\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\
\ \\
Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\
\
MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\
domains.\
Hum Mutat. 2019 Aug;40(8):1030-1038.\
PMID: 31116477; PMC:
\
Silk M, Petrovski S, Ascher DB.\
\
MTR-Viewer: identifying regions within genes under purifying selection.\
Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\
PMID: 31170280; PMC:
\
Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\
Hardarson MT, Oddsson A, Jensson BO et al.\
\
The sequences of 150,119 genomes in the UK Biobank.\
Nature. 2022 Jul;607(7920):732-740.\
PMID: 35859178; PMC:
\
Huang YF, Gulko B, Siepel A.\
\
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic\
data.\
Nat Genet. 2017 Apr;49(4):618-624.\
PMID: 28288115; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 115\ shortLabel ENCFF735XLO_ENCFF970LMB_ENCFF481LLD_ENCFF838OJW\ subGroups organ=blood view=cCREs_view simpleBiosample=MM_1S biosampleType=cell_line donor=ENCDO697GBW dataType=typeCcres\ track ENCFF735XLO_ENCFF970LMB_ENCFF481LLD_ENCFF838OJW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF678MUA ENCSR000AAF + strand bigWig Endothelial cell of coronary artery female adult (41 years) and male adult (77 years) + strand total RNA-seq signal 2 11 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/aa5d3327-f4bd-47d1-b2b2-ca26e7094d11/ENCFF678MUA.bigWig\ color 255,37,41\ longLabel Endothelial cell of coronary artery female adult (41 years) and male adult (77 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAF + strand\ track wgEncodeReg4RnaSeq_ENCFF678MUA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF805QIE ENCSR000ALJ Peak bigBed 5 Keratinocyte female CTCF peak 4 11 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ea4f12ca-e4af-4350-a5eb-4d5c5c102be2/ENCFF805QIE.bigBed\ color 0,176,240\ labelFields none\ longLabel Keratinocyte female CTCF peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ALJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF805QIE\ type bigBed 5\ useScore 1\ visibility squish\ gasp GenomeAsia 1.7k SNVs vcfTabix SNV Frequencies: GenomeAsia Pilot - Substitutions 0 11 0 0 0 127 127 127 0 0 0
Description
\\ The GenomeAsia 100K project aims\ to sequence 100,000 Asian individuals. This pilot release (GAsP) contains whole-genome sequencing\ data of 1,739 individuals from 219 population groups across Asia. Frequencies are broken down by\ Northeast Asian, Southeast Asian, and South Asian ancestry groups. The data is split into two\ subtracks: substitutions and indels.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is gasp.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original VCFs are also available from the\ GenomeAsia 100K\ website. No license nor login is required.\
\ \Methods
\\ Samples were sequenced on Illumina HiSeq 2500, HiSeq 4000, and HiSeq X Ten instruments with\ 2×100 bp or 2×150 bp paired-end reads at an average depth of 36x. Reads were aligned to\ GRCh37 using BWA-MEM. Duplicate reads were marked with SAMBLASTER and sorted with Sambamba.\ Per-sample variant calling was performed with GATK HaplotypeCaller in GVCF mode, followed by\ joint genotyping with GenotypeGVCFs. Variant quality score recalibration (VQSR) was applied at\ a 99% sensitivity tranche for both SNPs and indels. Sample-level QC included contamination\ checks with verifyBamID and sex concordance verification. The final callset contains\ ∼65 million variants across 1,739 individuals from 219 populations.\
\\ The upstream callset is on GRCh37. We lifted it to hg38 using\ CrossMap and the UCSC\ hg19ToHg38 chain file. After lifting, variants that landed on alt, random, fix, or\ unplaced contigs were dropped, and the result was sorted and indexed with tabix.\
\\ The makeDoc file documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were needed and are also available from GitHub.\
\ \References
\\
GenomeAsia100K Consortium.\
\
The GenomeAsia 100K Project enables genetic discoveries across Asia.\
Nature. 2019 Dec;576(7785):106-111.\
PMID: 31802016; PMC:
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0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in A549 from ENCODE 3 (ENCFF199OOU)\ parent encTfChipPk off\ shortLabel A549 EHMT2\ subGroups cellType=A549 factor=EHMT2\ track encTfChipPkENCFF199OOU\ cloneEndABC24 ABC24 bed 12 Agencourt fosmid library 24 0 12 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 24\ parent cloneEndSuper off\ priority 12\ shortLabel ABC24\ subGroups source=agencourt\ track cloneEndABC24\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_rev AorticSmsToFgf2_00hr30minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse 0 12 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_rev AorticSmsToFgf2_00hr30minBr1- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse 1 12 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep1%20%28LK7%29.CNhs13341.12644-134G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep1 (LK7)_CNhs13341_12644-134G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12644-134G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep1LK7_CNhs13341_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12644-134G7\ urlLabel FANTOM5 Details:\ bismap100Quantitative Bismap M100 bigWig 0.01 1.00 Multi-read mappability with 100-mers after bisulfite conversion 0 12 240 170 80 247 212 167 0 0 0 map 0 bigDataUrl /gbdb/hg38/hoffmanMappability/k100.Bismap.MultiTrackMappability.bw\ color 240,170,80\ longLabel Multi-read mappability with 100-mers after bisulfite conversion\ parent bismapBigWig off\ priority 12\ shortLabel Bismap M100\ subGroups view=MR\ track bismap100Quantitative\ type bigWig 0.01 1.00\ visibility hide\ wgEncodeRegDnaseUwBjPeak BJ Pk narrowPeak BJ foreskin fibroblast cell line DNaseI Peaks from ENCODE 1 12 255 184 85 255 219 170 1 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel BJ Pk\ subGroups view=a_Peaks cellType=BJ treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwBjPeak\ wgEncodeRegDnaseUwBjWig BJ Sg bigWig 0 28788.2 BJ foreskin fibroblast cell line DNaseI Signal from ENCODE 0 12 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.11593\ shortLabel BJ Sg\ subGroups cellType=BJ treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwBjSignal\ track wgEncodeRegDnaseUwBjWig\ type bigWig 0 28788.2\ gtexCovBrainCerebellarHemisphere Brain Cereb Hemisph bigWig Brain Cerebellar Hemisphere 0 12 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13X6J-0011-R11a-SM-5P9HE.Brain_Cerebellar_Hemisphere.RNAseq.bw\ color 238,238,0\ longLabel Brain Cerebellar Hemisphere\ parent gtexCov\ shortLabel Brain Cereb Hemisph\ track gtexCovBrainCerebellarHemisphere\ wgEncodeReg4TxnBreastMinus Breast - bigWig Avg. - strand total RNA-seq level of 4 breast experiments (tissues and primary cells only) 0 12 65 171 173 160 213 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpBreastMinus.bw\ color 65,171,173\ longLabel Avg. - strand total RNA-seq level of 4 breast experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 12\ shortLabel Breast -\ track wgEncodeReg4TxnBreastMinus\ type bigWig\ dbVar_common_american dbVar Curated American SVs bigBed 9 + . NCBI dbVar Curated Common SVs: American 3 12 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_american.bb\ longLabel NCBI dbVar Curated Common SVs: American\ parent dbVar_common off\ priority 12\ shortLabel dbVar Curated American SVs\ track dbVar_common_american\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ ENCFF389PZY_ENCFF587XGD_ENCFF184NWF_ENCFF496PSJ ENCFF389PZY_ENCFF587XGD_ENCFF184NWF_ENCFF496PSJ bigBed 9 + 5 CD14-positive monocyte, female: (1) cCREs 4 12 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF389PZY_ENCFF587XGD_ENCFF184NWF_ENCFF496PSJ.bb\ longLabel CD14-positive monocyte, female: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 20\ shortLabel ENCFF389PZY_ENCFF587XGD_ENCFF184NWF_ENCFF496PSJ\ subGroups organ=blood view=cCREs_view simpleBiosample=CD14-positive_monocyte-_female biosampleType=primary_cell donor=ENCDO265AAA dataType=typeCcres\ track ENCFF389PZY_ENCFF587XGD_ENCFF184NWF_ENCFF496PSJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF273WQL ENCSR000AAF - strand bigWig Endothelial cell of coronary artery female adult (41 years) and male adult (77 years) - strand total RNA-seq signal 2 12 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/c48b9bee-c278-4c76-8c2b-735834dfb9a7/ENCFF273WQL.bigWig\ color 255,37,41\ longLabel Endothelial cell of coronary artery female adult (41 years) and male adult (77 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAF - strand\ track wgEncodeReg4RnaSeq_ENCFF273WQL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF638DZB ENCSR000ALJ Signal bigWig Keratinocyte female CTCF signal 2 12 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d32236d6-0169-45f3-bddc-2bd9fc787ee2/ENCFF638DZB.bigWig\ color 0,176,240\ longLabel Keratinocyte female CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALJ Signal\ track wgEncodeReg4Epigenetics_ENCFF638DZB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF638DZB ENCSR000ALJ Signal bigWig Keratinocyte female CTCF ENCSR000ALJ signal 2 12 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d32236d6-0169-45f3-bddc-2bd9fc787ee2/ENCFF638DZB.bigWig\ color 127,133,209\ longLabel Keratinocyte female CTCF ENCSR000ALJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ALJ Signal\ track wgEncodeReg4TfChip_ENCFF638DZB\ type bigWig\ visibility full\ wgEncodeReg4AtacAllEsophagus Esophagus (all biosamples) bigWig Avg. ATAC level of 2 esophagus experiments (all biosamples) 0 12 159 131 100 207 193 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/esophagusATAC.bw\ color 159,131,100\ longLabel Avg. ATAC level of 2 esophagus experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 12\ shortLabel Esophagus (all biosamples)\ track wgEncodeReg4AtacAllEsophagus\ type bigWig\ hgdp1kFreq gnomAD HGDP+1kG 4k WGS vcfTabix SNV Frequencies: gnomAD HGDP + 1000 Genomes - 4,094 WGS, 80 populations 0 12 0 0 0 127 127 127 0 0 0
Description
\\ A reprocessed callset by the gnomAD project combining the 1000 Genomes and Human Genome Diversity Project\ (HGDP) data, with 4,094 whole genomes from 80 populations. The dataset includes per-population\ allele frequencies for all 80 populations as well as broad continental groupings from gnomAD\ (African, Admixed American, East Asian, European, Middle Eastern, South Asian, and others).\
\ \\ This track shows allele frequencies only. The full phased genotype data with haplotype\ clustering display is available in the\ gnomAD HGDP+1000G track under Phased Variants.\ The track here does not include the full variant frequencies for all subpopulations, instead, \ it aggregates frequencies to the main groups, AFR, AMI, AMR, ASJ, EAS, FIN, MID, NFE, OTH, SAS. \ To access the full frequency information, use the track under "Phased Variants".\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is hgdp1kFreq.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original VCFs with full genotypes can also be downloaded from\ gnomAD Downloads.\
\ \Methods
\\ The gnomAD project reprocessed 4,094 whole genomes from the 1000 Genomes Project and the Human\ Genome Diversity Project (HGDP) through a unified pipeline. Sequencing was performed on Illumina\ platforms at a mean coverage of 32–34x. Reads were aligned to GRCh38 (hs38DH reference with\ decoy and HLA sequences) using BWA-MEM 0.7.15. Variant calling followed GATK best practices:\ per-sample calls with GATK 3.5 HaplotypeCaller, then joint genotyping with GATK4 through\ the Hail VCF combiner, which scales the merge step. Allele-specific variant quality score recalibration\ (AS-VQSR) was applied for both SNPs and indels. Sample QC included contamination estimates\ (verifyBamID), sex concordance, relatedness filters (PC-Relate), and population assignment\ with PCA against gnomAD reference panels. Per-population allele frequencies were computed for\ 80 fine-grained populations and for broad continental groups.\
\\ The makeDoc file documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were also needed and are available from GitHub.\
\ \Credits
\\ Thanks to the gnomAD team at the Broad Institute for harmonizing and making this dataset\ publicly available, and to all participants of the 1000 Genomes Project and the Human Genome\ Diversity Project.\
\ \References
\\
Koenig Z, Yohannes MT, Nkambule LL, Zhao X, Goodrich JK, Kim HA, Wilson MW, Tiao G, Hao SP, Sahakian\
N et al.\
\
A harmonized public resource of deeply sequenced diverse human genomes.\
Genome Res. 2024 Jun 25;34(5):796-809.\
PMID: 38749656; PMC:
\
Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J\
et al.\
\
Insights into human genetic variation and population history from 929 diverse genomes.\
Science. 2020 Mar 20;367(6484).\
PMID: 32193295; PMC:
Position: $position
UniProt status: $status\ parent uniprot\ priority 12\ shortLabel Repeats\ track unipRepeat\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#family_and_domains" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ Agilent_Human_Exon_Clinical_Research_V2_Regions SureSel. Clinical V2 T bigBed Agilent - SureSelect Clinical Research Exome V2 Target Regions 0 12 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S30409818_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect Clinical Research Exome V2 Target Regions\ parent exomeProbesets on\ shortLabel SureSel. Clinical V2 T\ track Agilent_Human_Exon_Clinical_Research_V2_Regions\ type bigBed\ zooUnicorns ZooUNICORNs bigBed 3 + Zoonomia UNICORNs: Unannotated Intergenic Constrained Regions 0 12 0 0 0 127 127 127 0 0 0 compGeno 1 bigDataUrl /gbdb/hg38/unusualcons/UNICORNs.bigBed\ longLabel Zoonomia UNICORNs: Unannotated Intergenic Constrained Regions\ parent unusualcons on\ shortLabel ZooUNICORNs\ track zooUnicorns\ type bigBed 3 +\ chainXenLae2 xenLae2 Chain chain xenLae2 African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Chained Alignments\ otherDb xenLae2\ parent vertebrateChainNetViewchain off\ shortLabel xenLae2 Chain\ subGroups view=chain species=s034 clade=c03\ track chainXenLae2\ type chain xenLae2\ chainRhiRox1 rhiRox1 Chain chain rhiRox1 Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Chained Alignments\ otherDb rhiRox1\ parent primateChainNetViewchain off\ shortLabel rhiRox1 Chain\ subGroups view=chain species=s018 clade=c01\ track chainRhiRox1\ type chain rhiRox1\ chainCanFam6 Dog Chain chain canFam6 Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Chained Alignments\ otherDb canFam6\ parent placentalChainNetViewchain off\ shortLabel Dog Chain\ subGroups view=chain species=s034a clade=c01\ track chainCanFam6\ type chain canFam6\ encTfChipPkENCFF935ZUW A549 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in A549 from ENCODE 3 (ENCFF935ZUW) 0 13 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in A549 from ENCODE 3 (ENCFF935ZUW)\ parent encTfChipPk off\ shortLabel A549 ELF1\ subGroups cellType=A549 factor=ELF1\ track encTfChipPkENCFF935ZUW\ cloneEndABC27 ABC27 bed 12 Agencourt fosmid library 27 0 13 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 27\ parent cloneEndSuper off\ priority 13\ shortLabel ABC27\ subGroups source=agencourt\ track cloneEndABC27\ type bed 12\ visibility hide\ wgEncodeRegDnaseUwAg09309Peak AG09309 Pk narrowPeak AG09309 skin fibroblast DNaseI Peaks from ENCODE 1 13 255 186 85 255 220 170 1 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG09309 Pk\ subGroups view=a_Peaks cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg09309Peak\ wgEncodeRegDnaseUwAg09309Wig AG09309 Sg bigWig 0 29145.4 AG09309 skin fibroblast DNaseI Signal from ENCODE 0 13 255 186 85 255 220 170 0 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.11916\ shortLabel AG09309 Sg\ subGroups cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ table wgEncodeRegDnaseUwAg09309Signal\ track wgEncodeRegDnaseUwAg09309Wig\ type bigWig 0 29145.4\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_fwd AorticSmsToFgf2_00hr30minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward 0 13 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_fwd AorticSmsToFgf2_00hr30minBr2+ bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward 1 13 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ gtexCovBrainCortex Brain Cortex bigWig Brain Cortex 0 13 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-UTHO-3026-SM-3GAFB.Brain_Cortex.RNAseq.bw\ color 238,238,0\ longLabel Brain Cortex\ parent gtexCov\ shortLabel Brain Cortex\ track gtexCovBrainCortex\ wgEncodeReg4TxnConnectiveTissuePlus Connective tissue + bigWig Avg. + strand total RNA-seq level of 1 connective tissue experiments (tissues and primary cells only) 0 13 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpConnectiveTissuePlus.bw\ color 138,135,169\ longLabel Avg. + strand total RNA-seq level of 1 connective tissue experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 13\ shortLabel Connective tissue +\ track wgEncodeReg4TxnConnectiveTissuePlus\ type bigWig\ phastCons100way Cons 100 Verts wig 0 1 100 vertebrates conservation by PhastCons 0 13 70 130 70 130 70 70 0 0 0 compGeno 0 altColor 130,70,70\ autoScale off\ color 70,130,70\ configurable on\ longLabel 100 vertebrates conservation by PhastCons\ maxHeightPixels 100:40:11\ noInherit on\ parent cons100wayViewphastcons off\ priority 13\ shortLabel Cons 100 Verts\ spanList 1\ subGroups view=phastcons\ track phastCons100way\ type wig 0 1\ windowingFunction mean\ phastCons30way Cons 30 Mammals wig 0 1 30 mammals conservation by PhastCons (27 primates) 2 13 70 130 70 130 70 70 0 0 0 compGeno 0 altColor 130,70,70\ autoScale off\ color 70,130,70\ configurable on\ longLabel 30 mammals conservation by PhastCons (27 primates)\ maxHeightPixels 100:40:11\ noInherit on\ parent cons30wayViewphastcons on\ priority 13\ shortLabel Cons 30 Mammals\ spanList 1\ subGroups view=phastcons\ track phastCons30way\ type wig 0 1\ windowingFunction mean\ dbVar_common_east_asian dbVar Curated East Asian SVs bigBed 9 + . NCBI dbVar Curated Common SVs: East Asian 3 13 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_east_asian.bb\ longLabel NCBI dbVar Curated Common SVs: East Asian\ parent dbVar_common off\ priority 13\ shortLabel dbVar Curated East Asian SVs\ track dbVar_common_east_asian\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ ENCFF472WAW_ENCFF559ALK_ENCFF575FKS_ENCFF176ELT ENCFF472WAW_ENCFF559ALK_ENCFF575FKS_ENCFF176ELT bigBed 9 + 5 Brain microvascular endothelial cell: (1) cCREs 4 13 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF472WAW_ENCFF559ALK_ENCFF575FKS_ENCFF176ELT.bb\ longLabel Brain microvascular endothelial cell: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 16\ shortLabel ENCFF472WAW_ENCFF559ALK_ENCFF575FKS_ENCFF176ELT\ subGroups organ=blood_vessel view=cCREs_view simpleBiosample=brain_microvascular_endothelial_cell biosampleType=primary_cell donor=ENCDO227AAA dataType=typeCcres\ track ENCFF472WAW_ENCFF559ALK_ENCFF575FKS_ENCFF176ELT\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF821UQE ENCSR000AAG + strand bigWig Smooth muscle cell of the coronary artery female adult (53 years) and male adult (55 years) + strand total RNA-seq signal 2 13 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/2e871619-2285-4b4d-8660-194fbdb2fc93/ENCFF821UQE.bigWig\ color 255,37,41\ longLabel Smooth muscle cell of the coronary artery female adult (53 years) and male adult (55 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAG + strand\ track wgEncodeReg4RnaSeq_ENCFF821UQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF235NEN ENCSR000ALK Peak bigBed 5 Keratinocyte female H3K27ac peak 4 13 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/276053ad-e04d-4cb0-8149-382a88844f54/ENCFF235NEN.bigBed\ color 181,145,0\ longLabel Keratinocyte female H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALK Peak\ track wgEncodeReg4Epigenetics_ENCFF235NEN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF304VVZ ENCSR000ALV Peak bigBed 5 Mammary epithelial cell female adult (50 years) CTCF peaks 4 13 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/05/02/d608296b-f8b0-4435-bbc0-f8a50962e5c8/ENCFF304VVZ.bigBed\ labelFields none\ longLabel Mammary epithelial cell female adult (50 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ALV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF304VVZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4AtacAllGallbladder Gallbladder (all biosamples) bigWig ATAC level of 1 gallbladder experiment (all biosamples) 0 13 103 78 167 179 166 211 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/gallbladderATAC.bw\ color 103,78,167\ longLabel ATAC level of 1 gallbladder experiment (all biosamples)\ parent wgEncodeReg4Atac off\ priority 13\ shortLabel Gallbladder (all biosamples)\ track wgEncodeReg4AtacAllGallbladder\ type bigWig\ gregor GREGoR R4 3.6k WGS vcfTabix SNV Frequencies: GREGoR Consortium - Release 4, 3,624 WGS samples, rare disease families 0 13 0 0 0 127 127 127 0 0 0
Description
\\ The GREGoR Consortium\ (Genomics Research to Elucidate the Genetics of Rare diseases) is a\ National Human Genome Research Institute (NHGRI)-funded research consortium\ that works to identify the genetic basis of currently unexplained rare diseases.\ GREGoR is a collaboration between multiple research centers and a data coordinating center\ that apply genomic technologies to rare disease cohorts.\
\ \\ This track shows allele frequencies from the GREGoR Release 4 (R04, October 2025)\ joint variant callset of a subset of the 10,683 participants across\ 4,366 families. The joint callset includes only the 8,161 short-read whole-genome sequencing (WGS)\ samples, or a subset of these. The GREGoR site does not specify how many samples exactly are part\ of the joint callset. The callset does not include any of the 2,629 whole-exome sequencing (WES) samples.\ GREGoR also provides some long-read WGS, RNA-seq, and ATAC-seq, but these were not used for the joint callset either.\ The VCF shown here contains variant calls with VEP consequence annotations.\ The INFO fields include allele count (AC), allele frequency (AF), allele number (AN),\ and counts broken down by affected status (AC_AFFECTED, AC_UNAFFECTED, AC_UNKNOWN).\
\ \Display Conventions
\\ This is a VCF track. When zoomed in, variants are displayed with base-specific coloring.\ Mouseover shows the variant position, alleles, and allele frequency.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is gregor.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The full controlled-access GREGoR data is available through the\ AnVIL platform\ via controlled dbGaP access. More information on data access is available at\ the GREGoR data page.\
\ \Methods
\The sample processing methods of the GREGoR project depend on the sequencing center, see the Methods document below for details.\ The GREGoR R04 joint callset for short-read whole genome sequencing (srWGS) was generated\ by the GREGoR Data Coordinating Center (DCC) through a two-stage harmonization and joint\ genotyping pipeline. Raw srWGS data from GREGoR Consortium Research Centers were uniformly\ reprocessed with the Whole Genome Germline Single Sample WARP pipeline in DRAGEN-GATK\ mode (v3.1.6). This pipeline aligns reads to the GRCh38 reference genome\ (GCA_000001405.15_GRCh38_no_alt_analysis_set) with the DRAGMAP aligner, marks duplicates\ with Picard v2.26.10, and performs single-sample variant calling with GATK HaplotypeCaller using the\ DragSTR model with hard filtering. The output is per-sample gVCFs. Joint variant calling across all\ harmonized samples was then performed with the Genomic Variant Store (GVS), a\ scalable cloud-native joint genotyping pipeline developed for large cohort analysis in which\ variants are ingested into a query-optimized store and rendered to a multi-sample variant file\ format. The resulting joint callset was functionally annotated with Ensembl Variant Effect Predictor (VEP) v112.\ Full methods, with per-site library preparation and bioinformatics pipelines for independently\ processed samples, are available in the\ GREGoR R04 Methods document.\
\\ At UCSC, site VCF files were downloaded from GREGoR's Google Drive. \ The VCFs were merged with bcftools.\ We provide documentation that indicates how all source files of the varFreqs track were converted in the makeDoc file of the track. \ For some tracks, python scripts were necessary and are also available from GitHub\
\ \Credits
\\ The GREGoR Consortium is supported by the National Human Genome Research Institute (NHGRI).\ We thank the participants, their families, and the consortium for making this data available.\ For more information, see the\ GREGoR About page.\
\ \References
\\ The GREGoR Consortium does not yet have a peer-reviewed flagship publication describing the\ R04 release. For methods and data access details, see the\ GREGoR R04 Methods document and the\ GREGoR Consortium website.\
\ varRep 1 bigDataUrl /gbdb/hg38/varFreqs/gregor/gregor.vcf.gz\ dataVersion R04 (Oct 2025)\ longLabel SNV Frequencies: GREGoR Consortium - Release 4, 3,624 WGS samples, rare disease families\ parent varFreqs on\ priority 13\ shortLabel GREGoR R4 3.6k WGS\ track gregor\ type vcfTabix\ visibility hide\ chainHprcGCA_018852585v1 HG02145.mat chain GCA_018852585.1 HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 13 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018852585.1\ parent hprcChainNetViewchain off\ priority 29\ shortLabel HG02145.mat\ subGroups view=chain sample=s029 population=afr subpop=acb hap=mat\ track chainHprcGCA_018852585v1\ type chain GCA_018852585.1\ KIRC KIRC bigLolly 12 + Kidney renal clear cell carcinoma 0 13 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/KIRC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Kidney renal clear cell carcinoma\ parent gdcCancer off\ priority 13\ shortLabel KIRC\ track KIRC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4DnaseLiver Liver bigWig Avg. DNase level of 10 liver experiments (tissues and primary cells only) 0 13 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLiverDNase.bw\ color 137,152,82\ longLabel Avg. DNase level of 10 liver experiments (tissues and primary cells only)\ parent wgEncodeReg4Dnase\ priority 13\ shortLabel Liver\ track wgEncodeReg4DnaseLiver\ type bigWig\ lincRNAsCTLung Lung bed 5 + lincRNAs from lung 1 13 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from lung\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Lung\ subGroups view=lincRNAsRefseqExp tissueType=lung\ track lincRNAsCTLung\ wgEncodeReg4MarkH3k4me3Muscle Muscle bigWig Avg. H3K4me3 level of 24 muscle experiments (tissues and primary cells only) 0 13 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpMuscleH3K4me3.bw\ color 137,135,170\ longLabel Avg. H3K4me3 level of 24 muscle experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k4me3\ priority 13\ shortLabel Muscle\ track wgEncodeReg4MarkH3k4me3Muscle\ type bigWig\ oligo0TK Oligodendrocytes - Z000000TK bigWig Methylation Atlas: Oligodendrocytes - Z000000TK 2 13 148 103 189 201 179 222 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/oligo0TK.bw\ color 148,103,189\ longLabel Methylation Atlas: Oligodendrocytes - Z000000TK\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 13\ shortLabel Oligodendrocytes - Z000000TK\ subGroups cellType=Oligodend dataType=Replicate\ track oligo0TK\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k27acPancreas Pancreas bigWig Avg. H3K27ac level of 12 pancreas experiments (tissues and primary cells only) 2 13 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpPancreasH3K27ac.bw\ color 175,100,41\ longLabel Avg. H3K27ac level of 12 pancreas experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k27ac off\ priority 13\ shortLabel Pancreas\ track wgEncodeReg4MarkH3k27acPancreas\ type bigWig\ wgEncodeReg4MarkCtcfProstate Prostate bigWig Avg. CTCF level of 3 prostate experiments (tissues and primary cells only) 0 13 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpProstateCTCF.bw\ color 140,140,140\ longLabel Avg. CTCF level of 3 prostate experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkCtcf off\ priority 13\ shortLabel Prostate\ track wgEncodeReg4MarkCtcfProstate\ type bigWig\ unipConflict Seq. Conflicts bigBed 12 + UniProt Sequence Conflicts 1 13 0 0 0 127 127 127 0 0 0 genes 1 bigDataUrl /gbdb/hg38/uniprot/unipConflict.bb\ filterValues.status Manually reviewed (Swiss-Prot),Unreviewed (TrEMBL)\ longLabel UniProt Sequence Conflicts\ mouseOver UniProt record: $uniProtIdPosition: $position
UniProt status: $status\ parent uniprot off\ priority 13\ shortLabel Seq. Conflicts\ track unipConflict\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#Sequence_conflict_section" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ Agilent_Human_Exon_Focused_Covered SureSel. Focused P bigBed Agilent - SureSelect Focused Exome Covered by Probes 0 13 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07084713_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect Focused Exome Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. Focused P\ track Agilent_Human_Exon_Focused_Covered\ type bigBed\ netXenLae2 xenLae2 Net netAlign xenLae2 chainXenLae2 African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel African clawed frog (Aug. 2016 (Xenopus_laevis_v2/xenLae2)) Alignment Net\ otherDb xenLae2\ parent vertebrateChainNetViewnet off\ shortLabel xenLae2 Net\ subGroups view=net species=s034 clade=c03\ track netXenLae2\ type netAlign xenLae2 chainXenLae2\ netRhiRox1 rhiRox1 Net netAlign rhiRox1 chainRhiRox1 Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Golden snub-nosed monkey (Oct. 2014 (Rrox_v1/rhiRox1)) Alignment Net\ otherDb rhiRox1\ parent primateChainNetViewnet off\ shortLabel rhiRox1 Net\ subGroups view=net species=s018 clade=c01\ track netRhiRox1\ type netAlign rhiRox1 chainRhiRox1\ netCanFam6 Dog Net netAlign canFam6 chainCanFam6 Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Alignment Net 1 14 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Dog (Oct. 2020 (Dog10K_Boxer_Tasha/canFam6)) Alignment Net\ otherDb canFam6\ parent placentalChainNetViewnet on\ shortLabel Dog Net\ subGroups view=net species=s034a clade=c01\ track netCanFam6\ type netAlign canFam6 chainCanFam6\ encTfChipPkENCFF605JXG A549 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in A549 from ENCODE 3 (ENCFF605JXG) 0 14 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in A549 from ENCODE 3 (ENCFF605JXG)\ parent encTfChipPk off\ shortLabel A549 ELK1\ subGroups cellType=A549 factor=ELK1\ track encTfChipPkENCFF605JXG\ cloneEndABC7 ABC7 bed 12 Agencourt fosmid library 7 0 14 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 7\ parent cloneEndSuper off\ priority 14\ shortLabel ABC7\ subGroups source=agencourt\ track cloneEndABC7\ type bed 12\ visibility hide\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_rev AorticSmsToFgf2_00hr30minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse 0 14 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_rev AorticSmsToFgf2_00hr30minBr2- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse 1 14 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep2%20%28LK8%29.CNhs13360.12742-135I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep2 (LK8)_CNhs13360_12742-135I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12742-135I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep2LK8_CNhs13360_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12742-135I6\ urlLabel FANTOM5 Details:\ gtexCovBrainFrontalCortexBA9 Brain Front Cortex bigWig Brain Frontal Cortex BA9 0 14 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R10A-SM-32PM2.Brain_Frontal_Cortex_BA9.RNAseq.bw\ color 238,238,0\ longLabel Brain Frontal Cortex BA9\ parent gtexCov\ shortLabel Brain Front Cortex\ track gtexCovBrainFrontalCortexBA9\ wgEncodeReg4TxnConnectiveTissueMinus Connective tissue - bigWig Avg. - strand total RNA-seq level of 1 connective tissue experiments (tissues and primary cells only) 0 14 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpConnectiveTissueMinus.bw\ color 138,135,169\ longLabel Avg. - strand total RNA-seq level of 1 connective tissue experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 14\ shortLabel Connective tissue -\ track wgEncodeReg4TxnConnectiveTissueMinus\ type bigWig\ dbVar_common_european dbVar Curated European SVs bigBed 9 + . NCBI dbVar Curated Common SVs: European 3 14 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_european.bb\ longLabel NCBI dbVar Curated Common SVs: European\ parent dbVar_common on\ priority 14\ shortLabel dbVar Curated European SVs\ track dbVar_common_european\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ ENCFF707HLC_ENCFF935CPK_ENCFF557HHH_ENCFF880CZK ENCFF707HLC_ENCFF935CPK_ENCFF557HHH_ENCFF880CZK bigBed 9 + 5 Ascending aorta, female adult (51 years): (1) cCREs 4 14 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF707HLC_ENCFF935CPK_ENCFF557HHH_ENCFF880CZK.bb\ longLabel Ascending aorta, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 8\ shortLabel ENCFF707HLC_ENCFF935CPK_ENCFF557HHH_ENCFF880CZK\ subGroups organ=blood_vessel view=cCREs_view simpleBiosample=ascending_aorta-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF707HLC_ENCFF935CPK_ENCFF557HHH_ENCFF880CZK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF086AHW ENCSR000AAG - strand bigWig Smooth muscle cell of the coronary artery female adult (53 years) and male adult (55 years) - strand total RNA-seq signal 2 14 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/327fb1ec-cfe8-405e-a244-5daac8b8750b/ENCFF086AHW.bigWig\ color 255,37,41\ longLabel Smooth muscle cell of the coronary artery female adult (53 years) and male adult (55 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAG - strand\ track wgEncodeReg4RnaSeq_ENCFF086AHW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF443TJZ ENCSR000ALK Signal bigWig Keratinocyte female H3K27ac signal 2 14 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/4341dbab-7192-4402-974c-44ab070844fa/ENCFF443TJZ.bigWig\ color 181,145,0\ longLabel Keratinocyte female H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALK Signal\ track wgEncodeReg4Epigenetics_ENCFF443TJZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF804LBC ENCSR000ALV Signal bigWig Mammary epithelial cell female adult (50 years) CTCF ENCSR000ALV signal 2 14 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0c6547c2-d092-4b5a-9465-28b34cdaca0a/ENCFF804LBC.bigWig\ color 65,171,173\ longLabel Mammary epithelial cell female adult (50 years) CTCF ENCSR000ALV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ALV Signal\ track wgEncodeReg4TfChip_ENCFF804LBC\ type bigWig\ visibility full\ wgEncodeReg4AtacAllHeart Heart (all biosamples) bigWig Avg. ATAC level of 28 heart experiments (all biosamples) 0 14 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/heartATAC.bw\ color 116,50,165\ longLabel Avg. ATAC level of 28 heart experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 14\ shortLabel Heart (all biosamples)\ track wgEncodeReg4AtacAllHeart\ type bigWig\ netHprcGCA_018852585v1 HG02145.mat netAlign GCA_018852585.1 chainHprcGCA_018852585v1 HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chain Nets 1 14 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02145.mat HG02145.pri.mat.f1_v2 (Jun. 2021 GCA_018852585.1_HG02145.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018852585.1\ parent hprcChainNetViewnet off\ priority 29\ shortLabel HG02145.mat\ subGroups view=net sample=s029 population=afr subpop=acb hap=mat\ track netHprcGCA_018852585v1\ type netAlign GCA_018852585.1 chainHprcGCA_018852585v1\ wgEncodeRegDnaseUwHnpcepicPeak HNPCEpiC Pk narrowPeak HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Peaks from ENCODE 1 14 255 188 85 255 221 170 1 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HNPCEpiC Pk\ subGroups view=a_Peaks cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHnpcepicPeak\ wgEncodeRegDnaseUwHnpcepicWig HNPCEpiC Sg bigWig 0 26522.6 HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE 0 14 255 188 85 255 221 170 0 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.124\ shortLabel HNPCEpiC Sg\ subGroups cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ table wgEncodeRegDnaseUwHnpcepicSignal\ track wgEncodeRegDnaseUwHnpcepicWig\ type bigWig 0 26522.6\ hrc HRC 30k WGS vcfTabix SNV Frequencies: Haplotype Reference Consortium - 30k WGS (excl. 1000 Genomes) 0 14 0 0 0 127 127 127 0 0 0
Description
\\ The Haplotype Reference Consortium (HRC) is a collaboration among several\ large sequencing projects to create a reference panel for genotype imputation.\ Release 1.1 contains 64,976 haplotypes from 32,488 whole-genome sequenced samples at\ low coverage (average 7x), with 40 million variant sites (minimum allele count of 5).\
\\ The contributing studies include the 1000 Genomes Project, UK10K, and many other cohorts.\ Since 1000 Genomes data is already available as a separate track, this track shows only\ the frequencies from the non-1000 Genomes samples (~30,000 individuals). After the lift\ from GRCh37 to GRCh38, 38.3 million variants remain.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is hrc.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original site list file can also be downloaded from the\ HRC website.\ Our GitHub repo contains a\ script that converts the tab-separated file to VCF and lifts it to hg38.\
\ \Methods
\\ The HRC r1.1 site list was downloaded from the\ HRC website\ as a tab-separated file on GRCh37, converted to VCF and lifted to GRCh38 with UCSC liftOver.\ Only frequencies from the non-1000 Genomes samples (~30,000 of the 32,488 total) are included,\ since 1000 Genomes data is available separately. Of 40.4M input variants, 8,052 were unmapped\ by liftOver and 2.1M were present only in 1000 Genomes samples and were dropped, leaving\ 38.3M variants.\ The conversion steps for all source files of the varFreqs track are documented in the makeDoc file of the track.\ Some tracks required python scripts, which are also available from GitHub.\
\ \Credits
\\ Thanks to the Haplotype Reference Consortium and all contributing studies for making this\ reference panel publicly available.\
\ \References
\\
McCarthy S, Das S, Kretzschmar W, Delaneau O, Wood AR, Teumer A, Kang HM, Fuchsberger C,\
Danecek P, Sharp K et al.\
\
A reference panel of 64,976 haplotypes for genotype imputation.\
Nat Genet. 2016 Oct;48(10):1279-83.\
PMID: 27548312; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 9\ shortLabel ENCFF022SDS_ENCFF132YWJ_ENCFF118EKX_ENCFF857NIC\ subGroups organ=blood_vessel view=cCREs_view simpleBiosample=ascending_aorta-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF022SDS_ENCFF132YWJ_ENCFF118EKX_ENCFF857NIC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF263MKB ENCSR000AAH + strand bigWig Regular cardiac myocyte female adult (51 years) and male adult (48 years) + strand total RNA-seq signal 2 15 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/9353e2e1-9736-4ede-98f6-1cceef5d38ad/ENCFF263MKB.bigWig\ color 137,135,170\ longLabel Regular cardiac myocyte female adult (51 years) and male adult (48 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAH + strand\ track wgEncodeReg4RnaSeq_ENCFF263MKB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF873ERE ENCSR000ALV Peak bigBed 5 Mammary epithelial cell female adult 50 years CTCF peak 4 15 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/644529a3-c6f0-41f3-a1d4-8012fcab73e9/ENCFF873ERE.bigBed\ color 0,176,240\ labelFields none\ longLabel Mammary epithelial cell female adult 50 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALV Peak\ track wgEncodeReg4Epigenetics_ENCFF873ERE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF194VBQ ENCSR000AMA Peak bigBed 5 HepG2 CTCF peaks 4 15 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/df76abed-732e-4483-90e0-4a310efbc9a3/ENCFF194VBQ.bigBed\ labelFields none\ longLabel HepG2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AMA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF194VBQ\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018466835v1 HG02257.pat chain GCA_018466835.1 HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 15 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018466835.1\ parent hprcChainNetViewchain off\ priority 17\ shortLabel HG02257.pat\ subGroups view=chain sample=s017 population=afr subpop=acb hap=pat\ track chainHprcGCA_018466835v1\ type chain GCA_018466835.1\ genomeindia India GenomeIndia 9.7k WGS vcfTabix SNV Frequencies: GenomeIndia - 9,768 WGS, 83 populations (Bhattacharyya 2025) 0 15 0 0 0 127 127 127 0 0 0
Description
\\ The GenomeIndia\ project is a national initiative that coordinates academic and medical institutions\ across India to characterize the genetic diversity of the Indian subcontinent. The\ release used by this track is whole-genome sequencing of 9,768 healthy adults\ sampled from 83 anthropologically defined endogamous populations across India's\ ethnolinguistic and biogeographic range (Indo-European, Dravidian, Austroasiatic,\ and Tibeto-Burman language families, plus a continentally admixed outgroup). After\ joint genotyping and quality filtering, 129,938,889 high-confidence biallelic\ variants (~121M SNVs and ~8M indels) were reported, of which roughly one third are\ absent from gnomAD, 1000 Genomes, and GenomeAsia. This track shows the alternate\ allele frequency in that 9,768-sample autosomal call set.\
\\ Indian populations are underrepresented in global variant\ databases, so many globally rare alleles are at much higher frequencies in specific\ endogamous groups. The release ships only the cohort-wide alternate allele\ frequency (no per-population breakdown), so this track shows the overall\ GenomeIndia AF; AC is derived from AF (see Methods).\
\ \Display Conventions
\\ Variants are shown as a VCF dense track. Each row reports the genomic position,\ ref/alt alleles, the GenomeIndia alternate allele frequency, and a synthesized\ allele count. The track only includes autosomal variants (chr1–chr22); chrX,\ chrY, and chrM are not in the current release.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API\ can be used; the track name is genomeindia.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\
The original per-chromosome TSV summary statistics can be downloaded directly from\
the GenomeIndia Data Centre at
Methods
\\ PCR-free whole-genome sequencing libraries were prepared from blood-derived DNA and\ sequenced on Illumina NovaSeq 6000 to a per-sample average depth of at least 23×.\ Reads were processed with the Illumina DRAGEN v4.0.3 germline pipeline against\ GRCh38. The resulting per-sample gVCFs were then joint-genotyped with the Illumina\ gVCF genotyper. Site-level filters retained only PASS variants with\ QUAL ≥ 30, posterior genotype probability ≥ 99.9%, GQ > 20\ at every site (GQ > 40 for singletons and doubletons), heterozygous allele\ balance ≥ 0.2, call rate ≥ 98%, and Hardy–Weinberg equilibrium\ p > 1×10-11; sites with an inbreeding coefficient of 1\ were also excluded as technical artefacts. Variants were annotated for protein\ impact with Ensembl VEP v113 plus LOFTEE; details are in the published methods\ (Bhattacharyya et al. 2025, see References).\
\\
The release was downloaded from\
ibdc.dbtindia.gov.in as 9768GI_SummaryStats.tar.gz, which\
contains 22 per-chromosome TSV files of CHROM, POS, ID, REF, ALT, AF (no header).\
The TSV files were converted to a single sorted, bgzipped, tabix-indexed VCF by the\
script
Credits
\\ We thank the GenomeIndia consortium for making the 9,768-sample summary statistics\ publicly available. The track was built at UCSC by Max Haeussler.\
\ \References
\\ Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KB, Arvind P, Rupanagudi\ KV, Maitra A, Nagabandi T et al.\ \ Mapping genetic diversity with the GenomeIndia project.\ Nat Genet. 2025 Apr;57(4):767-773.\ PMID: 40200122\
\ \\ Subramanian K, Bhattacharyya C, Machha P, Mukherjee A, Tripathi D, Chakraborty S, Majumdar SS,\ Sengupta S, Singh P, More V et al; GenomeIndia Consortium.\ \ An Atlas of Indian Genetic Diversity.\ medRxiv. 2026 Mar 20;2026.03.20.26348801 (preprint).\
\ \ varRep 1 bigDataUrl /gbdb/hg38/varFreqs/_genomeindia/genomeindia.vcf.gz\ dataVersion 9768GI_SummaryStats (Apr 2025)\ longLabel SNV Frequencies: GenomeIndia - 9,768 WGS, 83 populations (Bhattacharyya 2025)\ parent varFreqs on\ priority 15\ shortLabel India GenomeIndia 9.7k WGS\ tableBrowser off\ track genomeindia\ type vcfTabix\ visibility hide\ LAML LAML bigLolly 12 + Acute Myeloid Leukemia 0 15 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/LAML.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Acute Myeloid Leukemia\ parent gdcCancer off\ priority 15\ shortLabel LAML\ track LAML\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4DnaseLymphoidTissue Lymphoid tissue bigWig DNase level of 1 lymphoid tissue experiment (tissues and primary cells only) 0 15 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLymphoidTissueDNase.bw\ color 130,141,158\ longLabel DNase level of 1 lymphoid tissue experiment (tissues and primary cells only)\ parent wgEncodeReg4Dnase off\ priority 15\ shortLabel Lymphoid tissue\ track wgEncodeReg4DnaseLymphoidTissue\ type bigWig\ wgEncodeReg4AtacAllMuscle Muscle (all biosamples) bigWig Avg. ATAC level of 12 muscle experiments (all biosamples) 0 15 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/muscleATAC.bw\ color 137,135,170\ longLabel Avg. ATAC level of 12 muscle experiments (all biosamples)\ parent wgEncodeReg4Atac\ priority 15\ shortLabel Muscle (all biosamples)\ track wgEncodeReg4AtacAllMuscle\ type bigWig\ oligo42L Oligodendrocytes - Z0000042L bigWig Methylation Atlas: Oligodendrocytes - Z0000042L 2 15 148 103 189 201 179 222 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/oligo42L.bw\ color 148,103,189\ longLabel Methylation Atlas: Oligodendrocytes - Z0000042L\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 15\ shortLabel Oligodendrocytes - Z0000042L\ subGroups cellType=Oligodend dataType=Replicate\ track oligo42L\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ lincRNAsCTOvary Ovary bed 5 + lincRNAs from ovary 1 15 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from ovary\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Ovary\ subGroups view=lincRNAsRefseqExp tissueType=ovary\ track lincRNAsCTOvary\ wgEncodeReg4MarkH3k4me3Penis Penis bigWig Avg. H3K4me3 level of 3 penis experiments (tissues and primary cells only) 0 15 20 74 159 137 164 207 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpPenisH3K4me3.bw\ color 20,74,159\ longLabel Avg. H3K4me3 level of 3 penis experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 15\ shortLabel Penis\ track wgEncodeReg4MarkH3k4me3Penis\ type bigWig\ wgEncodeReg4MarkH3k27acProstate Prostate bigWig Avg. H3K27ac level of 3 prostate experiments (tissues and primary cells only) 2 15 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpProstateH3K27ac.bw\ color 140,140,140\ longLabel Avg. H3K27ac level of 3 prostate experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkH3k27ac off\ priority 15\ shortLabel Prostate\ track wgEncodeReg4MarkH3k27acProstate\ type bigWig\ Agilent_Human_Exon_V4_Covered SureSel. V4+UTR P bigBed Agilent - SureSelect All Exon V4 + UTRs Covered by Probes 0 15 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S04380110_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V4 + UTRs Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V4+UTR P\ track Agilent_Human_Exon_V4_Covered\ type bigBed\ wgEncodeReg4MarkCtcfUterus Uterus bigWig Avg. CTCF level of 2 uterus experiments (tissues and primary cells only) 0 15 186 111 165 220 183 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpUterusCTCF.bw\ color 186,111,165\ longLabel Avg. CTCF level of 2 uterus experiments (tissues and primary cells only)\ parent wgEncodeReg4MarkCtcf off\ priority 15\ shortLabel Uterus\ track wgEncodeReg4MarkCtcfUterus\ type bigWig\ wgEncodeRegDnaseUwWi38Peak WI-38 Pk narrowPeak WI-38 embryonic lung fibroblast cell line DNaseI Peaks from ENCODE 1 15 255 192 85 255 223 170 1 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel WI-38 Pk\ subGroups view=a_Peaks cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi38Peak\ wgEncodeRegDnaseUwWi38Wig WI-38 Sg bigWig 0 21133.7 WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE 0 15 255 192 85 255 223 170 0 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.13075\ shortLabel WI-38 Sg\ subGroups cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwWi38Signal\ track wgEncodeRegDnaseUwWi38Wig\ type bigWig 0 21133.7\ netCanFam4 Dog Net netAlign canFam4 chainCanFam4 Dog (Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Dog (Mar. 2020 (UU_Cfam_GSD_1.0/canFam4)) Alignment Net\ otherDb canFam4\ parent placentalChainNetViewnet on\ shortLabel Dog Net\ subGroups view=net species=s034c clade=c01\ track netCanFam4\ type netAlign canFam4 chainCanFam4\ netDanRer11 Zebrafish Net netAlign danRer11 chainDanRer11 Zebrafish (May 2017 (GRCz11/danRer11)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Zebrafish (May 2017 (GRCz11/danRer11)) Alignment Net\ otherDb danRer11\ parent vertebrateChainNetViewnet on\ shortLabel Zebrafish Net\ subGroups view=net species=s043 clade=c06\ track netDanRer11\ type netAlign danRer11 chainDanRer11\ netMacFas5 Crab-eating macaque Net netAlign macFas5 chainMacFas5 Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Alignment Net 1 16 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Crab-eating macaque (Jun. 2013 (Macaca_fascicularis_5.0/macFas5)) Alignment Net\ otherDb macFas5\ parent primateChainNetViewnet off\ shortLabel Crab-eating macaque Net\ subGroups view=net species=s020 clade=c01\ track netMacFas5\ type netAlign macFas5 chainMacFas5\ encTfChipPkENCFF896WFR A549 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in A549 from ENCODE 3 (ENCFF896WFR) 0 16 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in A549 from ENCODE 3 (ENCFF896WFR)\ parent encTfChipPk off\ shortLabel A549 ETS1\ subGroups cellType=A549 factor=ETS1\ track encTfChipPkENCFF896WFR\ cloneEndABC9 ABC9 bed 12 Agencourt fosmid library 9 0 16 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Agencourt fosmid library 9\ parent cloneEndSuper off\ priority 16\ shortLabel ABC9\ subGroups source=agencourt\ track cloneEndABC9\ type bed 12\ visibility hide\ wgEncodeReg4MarkCtcfAllAdipose Adipose (all biosamples) bigWig Avg. CTCF level of 4 adipose experiments (all biosamples) 0 16 255 119 39 255 187 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/adiposeCTCF.bw\ color 255,119,39\ longLabel Avg. CTCF level of 4 adipose experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 16\ shortLabel Adipose (all biosamples)\ track wgEncodeReg4MarkCtcfAllAdipose\ type bigWig\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_rev AorticSmsToFgf2_00hr30minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse 0 16 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_rev AorticSmsToFgf2_00hr30minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse 1 16 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr30min%2c%20biol_rep3%20%28LK9%29.CNhs13569.12840-137B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr30min, biol_rep3 (LK9)_CNhs13569_12840-137B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12840-137B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr30minBiolRep3LK9_CNhs13569_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12840-137B5\ urlLabel FANTOM5 Details:\ gtexCovBrainHypothalamus Brain Hypothal bigWig Brain Hypothalamus 0 16 238 238 0 246 246 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R8A-SM-32PLM.Brain_Hypothalamus.RNAseq.bw\ color 238,238,0\ longLabel Brain Hypothalamus\ parent gtexCov\ shortLabel Brain Hypothal\ track gtexCovBrainHypothalamus\ dbVar_common_other dbVar Curated Other Pop SVs bigBed 9 + . NCBI dbVar Curated Common SVs: Other 3 16 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/dbvar/variants/$$ varRep 1 bigDataUrl /gbdb/hg38/bbi/dbVar/common_other.bb\ longLabel NCBI dbVar Curated Common SVs: Other\ parent dbVar_common off\ priority 16\ shortLabel dbVar Curated Other Pop SVs\ track dbVar_common_other\ type bigBed 9 + .\ url https://www.ncbi.nlm.nih.gov/dbvar/variants/$$\ urlLabel NCBI Variant Page:\ wgEncodeReg4TxnEmbryoMinus Embryo - bigWig Avg. - strand total RNA-seq level of 1 embryo experiments (tissues and primary cells only) 0 16 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEmbryoMinus.bw\ color 118,158,101\ longLabel Avg. - strand total RNA-seq level of 1 embryo experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 16\ shortLabel Embryo -\ track wgEncodeReg4TxnEmbryoMinus\ type bigWig\ ENCFF383WYK_ENCFF811RQX_ENCFF130NUG_ENCFF341RAH ENCFF383WYK_ENCFF811RQX_ENCFF130NUG_ENCFF341RAH bigBed 9 + 5 Coronary artery, female adult (53 years): (1) cCREs 4 16 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF383WYK_ENCFF811RQX_ENCFF130NUG_ENCFF341RAH.bb\ longLabel Coronary artery, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 23\ shortLabel ENCFF383WYK_ENCFF811RQX_ENCFF130NUG_ENCFF341RAH\ subGroups organ=blood_vessel view=cCREs_view simpleBiosample=coronary_artery-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF383WYK_ENCFF811RQX_ENCFF130NUG_ENCFF341RAH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF933WED ENCSR000AAH - strand bigWig Regular cardiac myocyte female adult (51 years) and male adult (48 years) - strand total RNA-seq signal 2 16 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/980f57b1-6777-47f1-89ff-17f4ab2d3b29/ENCFF933WED.bigWig\ color 137,135,170\ longLabel Regular cardiac myocyte female adult (51 years) and male adult (48 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAH - strand\ track wgEncodeReg4RnaSeq_ENCFF933WED\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF804LBC ENCSR000ALV Signal bigWig Mammary epithelial cell female adult 50 years CTCF signal 2 16 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0c6547c2-d092-4b5a-9465-28b34cdaca0a/ENCFF804LBC.bigWig\ color 0,176,240\ longLabel Mammary epithelial cell female adult 50 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALV Signal\ track wgEncodeReg4Epigenetics_ENCFF804LBC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF357NFO ENCSR000AMA Signal bigWig HepG2 CTCF ENCSR000AMA signal 2 16 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/74550202-5afe-4e92-bc8a-249e470935fc/ENCFF357NFO.bigWig\ color 137,152,82\ longLabel HepG2 CTCF ENCSR000AMA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AMA Signal\ track wgEncodeReg4TfChip_ENCFF357NFO\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm04503Peak GM04503 Pk narrowPeak GM04503 skin fibroblast DNaseI Peaks from ENCODE 1 16 255 200 85 255 227 170 1 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM04503 Pk\ subGroups view=a_Peaks cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04503Peak\ wgEncodeRegDnaseUwGm04503Wig GM04503 Sg bigWig 0 11390.2 GM04503 skin fibroblast DNaseI Signal from ENCODE 0 16 255 200 85 255 227 170 0 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.1425\ shortLabel GM04503 Sg\ subGroups cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwGm04503Signal\ track wgEncodeRegDnaseUwGm04503Wig\ type bigWig 0 11390.2\ netHprcGCA_018466835v1 HG02257.pat netAlign GCA_018466835.1 chainHprcGCA_018466835v1 HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chain Nets 1 16 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02257.pat HG02257.alt.pat.f1_v2 (May 2021 GCA_018466835.1_HG02257.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018466835.1\ parent hprcChainNetViewnet off\ priority 17\ shortLabel HG02257.pat\ subGroups view=net sample=s017 population=afr subpop=acb hap=pat\ track netHprcGCA_018466835v1\ type netAlign GCA_018466835.1 chainHprcGCA_018466835v1\ indigenomes India IndiGenomes 1k WGS vcfTabix SNV Frequencies: IndiGenomes India - 1,029 samples 0 16 0 0 0 127 127 127 0 0 0
Description
\\ IndiGenomes provides\ whole genome sequencing data of 1,029 healthy Indian individuals under the pilot phase of the\ "IndiGen" program. The IndiGenomes website also provides SV call and Alu insertion VCFs.\
\\ The deployed VCF shown in this track is the public release subset distributed by the\ IndiGenomes project (18,016,257 records). The full Jain 2021 callset reports 55.8 million\ variants from the 1,029-genome cohort; the public release is a curated subset of those\ sites. The deployed VCF is sites-only and carries a per-variant VRT (variant type)\ INFO field. Per-variant allele counts and allele frequencies are not distributed with the\ public release and are not shown in this track.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is indigenomes.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original data can also be downloaded from the IndiGen website.\
\ \Methods
\\ Genomic DNA was extracted from 5 ml of peripheral blood collected via venipuncture from\ 1,029 self-declared healthy Indian individuals representing diverse geographic, ethnic, and\ linguistic groups, using the salting-out method. Whole-genome libraries were prepared using\ the TruSeq DNA PCR-free library preparation kit (Illumina). Sequencing was performed on the\ Illumina NovaSeq 6000 platform with 150×2 bp paired-end reads targeting ≥30×\ mean coverage. Alignment to the GRCh38 reference genome, post-processing, and\ default quality-filtered variant calling were performed end-to-end on the Illumina DRAGEN\ v3.4 Bio-IT platform, which uses field-programmable gate array (FPGA) logic for\ high-throughput processing. The full Jain 2021 callset comprises 55,898,122 single-allelic\ genetic variants (SNVs and indels), of which 32.23% were unique to the Indian samples\ and absent from global reference databases. Variants were annotated using ANNOVAR with\ RefGene, and allele frequencies were cross-referenced against gnomAD v3, 1000 Genomes,\ ExAC, ESP6500, and the Greater Middle East Variome Project. The\ IndiGenomes database\ distributes a public-release subset of these variants (18,016,257 records); that subset is\ the file used in this track.\ (Jain, Bhoyar, Scaria, Sivasubbu & the IndiGen Consortium,\ Nucleic Acids Research 2021).\
\\ The makeDoc file of the track documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were also used and are available from GitHub.\
\ \References
\\
Jain A, Bhoyar RC, Pandhare K, Mishra A, Sharma D, Imran M, Senthivel V, Divakar MK, Rophina M,\
Jolly B et al.\
\
IndiGenomes: a comprehensive resource of genetic variants from over 1000 Indian genomes.\
Nucleic Acids Res. 2021 Jan 8;49(D1):D1225-D1232.\
PMID: 33095885; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 154\ shortLabel ENCFF013UBZ_ENCFF901QWB_ENCFF972ZHA_ENCFF500RDL\ subGroups organ=blood_vessel view=cCREs_view simpleBiosample=tibial_artery-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF013UBZ_ENCFF901QWB_ENCFF972ZHA_ENCFF500RDL\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF827XBB ENCSR000AAI + strand bigWig Dermis blood vessel endothelial cell female child (16 years) and male child (13 years) + strand total RNA-seq signal 2 17 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/ec6c2e97-057e-4bce-aafe-4bf7b11bd93b/ENCFF827XBB.bigWig\ color 255,37,41\ longLabel Dermis blood vessel endothelial cell female child (16 years) and male child (13 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAI + strand\ track wgEncodeReg4RnaSeq_ENCFF827XBB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF165POJ ENCSR000ALW Peak bigBed 5 Mammary epithelial cell female adult 50 years H3K27ac peak 4 17 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/e318b597-de0a-4e3c-bbef-db6b33ef4a35/ENCFF165POJ.bigBed\ color 181,145,0\ longLabel Mammary epithelial cell female adult 50 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALW Peak\ track wgEncodeReg4Epigenetics_ENCFF165POJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF764RHO ENCSR000AMF Peak bigBed 5 H1 CTCF peaks 4 17 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/c202c70a-c44b-48a6-82b0-641107335168/ENCFF764RHO.bigBed\ labelFields none\ longLabel H1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AMF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF764RHO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4TxnEpitheliumPlus Epithelium + bigWig Avg. + strand total RNA-seq level of 1 epithelium experiments (tissues and primary cells only) 0 17 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEpitheliumPlus.bw\ color 221,126,107\ longLabel Avg. + strand total RNA-seq level of 1 epithelium experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 17\ shortLabel Epithelium +\ track wgEncodeReg4TxnEpitheliumPlus\ type bigWig\ wgEncodeRegDnaseUwGm04504Peak GM04504 Pk narrowPeak GM04504 skin fibroblast DNaseI Peaks from ENCODE 1 17 255 204 85 255 229 170 1 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM04504 Pk\ subGroups view=a_Peaks cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04504Peak\ wgEncodeRegDnaseUwGm04504Wig GM04504 Sg bigWig 0 11566.9 GM04504 skin fibroblast DNaseI Signal from ENCODE 0 17 255 204 85 255 229 170 0 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.14786\ shortLabel GM04504 Sg\ subGroups cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwGm04504Signal\ track wgEncodeRegDnaseUwGm04504Wig\ type bigWig 0 11566.9\ heartCardioMerged Heart Cardiomyocytes Merged bigWig Methylation Atlas: Heart Cardiomyocytes Merged Samples 2 17 220 20 60 237 137 157 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartCardioMerged.bw\ color 220,20,60\ longLabel Methylation Atlas: Heart Cardiomyocytes Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 17\ shortLabel Heart Cardiomyocytes Merged\ subGroups cellType=Heart-Cardio dataType=Merged\ track heartCardioMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ chainHprcGCA_018466855v1 HG02559.pat chain GCA_018466855.1 HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 17 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018466855.1\ parent hprcChainNetViewchain off\ priority 19\ shortLabel HG02559.pat\ subGroups view=chain sample=s019 population=afr subpop=acb hap=pat\ track chainHprcGCA_018466855v1\ type chain GCA_018466855.1\ tommo60kjpn Japan ToMMo 61k WGS vcfTabix SNV Frequencies: Japan 61k - ToMMo SNV+Indels 0 17 0 0 0 127 127 127 0 0 0
Description
\\ An allele frequency panel based on short-read whole-genome sequencing analysis of 61,000 Japanese\ individuals, produced by the\ Tohoku Medical Megabank\ Organization (ToMMo) at Tohoku University. The project includes other datatypes such as STRs,\ long-read SVs and short-read CNVs.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is tommo60kjpn.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original data can also be downloaded from the jMorp website, specifically the\ Downloads section.\
\ \Methods
\\ Genomic DNA was obtained from peripheral blood, saliva, or cord blood samples. Sequencing was\ performed on Illumina HiSeq 2500, HiSeq X Five, NovaSeq 6000, and MGI DNBSeq G400/T7 instruments.\ Reads were aligned to the GRCh38 reference using BWA 0.7.15 or BWA-mem2 2.1. Alignments underwent\ base quality score recalibration (BQSR) with the GATK BaseRecalibrator tool. SNV/indel calling was\ performed using GATK HaplotypeCaller, followed by multisample joint genotyping with Sentieon\ Genomics tools and variant quality score recalibration (VQSR) filtering. Related samples were\ identified and removed with KING 2.3.1 to produce the final allele frequency panel.\
\\ The makeDoc file for this track describes how all source files of the varFreqs track were converted.\ For some tracks, python scripts were needed and are available from GitHub.\
\ \References
\\
Tadaka S, Kawashima J, Hishinuma E, Saito S, Okamura Y, Otsuki A, Kojima K, Komaki S, Aoki Y, Kanno\
T et al.\
\
jMorp: Japanese Multi-Omics Reference Panel update report 2023.\
Nucleic Acids Res. 2024 Jan 5;52(D1):D622-D632.\
PMID: 37930845; PMC:
Description
\ \\ This track shows the placements of the BCGSC Human BAC Re-Array,\ a curated "32k set" of bacterial artificial chromosome (BAC) clones that\ represents a minimal-overlap tiling path across the human genome. The clones\ are available for ordering from\ BACPAC\ Genomics at the Children's Hospital Oakland Research Institute (CHORI),\ where additional information on the collection, chromosome-specific sub-plates\ and quality control can also be found.\
\ \\ The set was assembled by the BC Cancer Genome Sciences Centre (Marco Marra\ lab) together with the BACPAC Genomics group at CHORI to provide a compact,\ redundant-free clone collection for physical mapping, functional genomics and\ array-based assays such as comparative genomic hybridization (CGH) and FISH.\
\ \\ The 32k set was selected from the human physical fingerprint map so that every\ region of the map is represented at least once. Additional clones were added\ to fill regions that initially lacked coverage, resulting in an average\ resolution of approximately 46 kb between overlapping BAC segments. The set\ provides coverage for more than 99% of both the fingerprint map and the\ reference genome assembly.\
\ \\ Most clones in the set (about 30,388) are drawn from the RPCI-11 and RPCI-13\ human BAC libraries; a smaller contribution (about 2,062 clones) comes from\ the CalTech CIT-D library (CTD). Unlike the other tracks in this container,\ the 32k set does not rely on BAC end sequences: clone identity and assembly\ placement have been verified repeatedly by HindIII fingerprinting at the\ Genome Sciences Centre.\
\ \Display Conventions and Configuration
\ \\ Each item represents the genomic placement of a single BAC clone in the 32k\ re-array, labeled with its clone name (e.g. RP11-…,\ CTD-…). Clicking a clone opens a detail page with a link\ to the corresponding BACPAC Genomics clone record, where ordering and\ additional clone metadata are available.\
\ \Methods
\ \\ The original placements were generated by CHORI/BACPAC by lifting an earlier\ clone set onto GRCh38/hg38 from older assemblies. The pre-lifted BED file\ provided by BACPAC was downloaded from\ bacpacresources.org, the custom-track header lines were\ removed, the data were sorted and the file was converted to bigBed (BED5)\ format with bedToBigBed.\
\ \\ Note: earlier supporting data such as the original HindIII fingerprints and\ BAC end sequences for this minimal set are no longer available from BACPAC\ Genomics.\
\ \Data Access
\ \\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator, and exported from there\ to spreadsheet or tab-separated tables. From scripts, the data can be accessed\ through our REST API,\ using track=bacRearray32k.\
\ \\ For automated download and analysis, the genome annotation is stored in a\ bigBed file that can be downloaded from\ our\ download server as bacRearray32k.bb. Individual regions or the\ whole annotation can be obtained using our tool bigBedToBed, which\ can be compiled from the source code or downloaded as a precompiled binary for\ your system. Instructions for downloading source code and binaries can be\ found here. The tool can also be used to obtain features within\ a given range, e.g.\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/cloneEnd/bacRearray32k.bb\ -chrom=chr21 -start=0 -end=100000000 stdout.\
\ \\ The original annotation source data can be downloaded from\ BACPAC Genomics. Additional information about the clone\ collection, including ordering, chromosome-specific sub-plates, and quality\ control, is available on the BACPAC\ Human BAC Minimal Tiling Set page.\
\ \Credits
\ \\ The 32k Human BAC Re-Array was generated in collaboration between BACPAC\ Genomics at CHORI (Pieter J. de Jong and colleagues) and the BC Cancer Genome\ Sciences Centre (Marco Marra lab), Vancouver, BC, Canada. We thank Pieter J.\ de Jong for providing the pre-lifted hg38 placements. The RPCI-11 and RPCI-13\ source libraries were constructed at the Roswell Park Cancer Institute. For\ background on de Jong's role in building these clone libraries, see this\ Undark profile.\
\ \References
\ \\
Krzywinski M, Bosdet I, Smailus D, Chiu R, Mathewson C, Wye N, Barber S, Brown-John M, Chan S, Chand\
S et al.\
\
A set of BAC clones spanning the human genome.\
Nucleic Acids Res. 2004;32(12):3651-60.\
PMID: 15247347; PMC:
\
Osoegawa K, Mammoser AG, Wu C, Frengen E, Zeng C, Catanese JJ, de Jong PJ.\
\
A bacterial artificial chromosome library for sequencing the complete human genome.\
Genome Res. 2001 Mar;11(3):483-96.\
PMID: 11230172; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 149\ shortLabel ENCFF156LUX_ENCFF696UEY_ENCFF762YWL_ENCFF429ZQN\ subGroups organ=blood_vessel view=cCREs_view simpleBiosample=thoracic_aorta-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF156LUX_ENCFF696UEY_ENCFF762YWL_ENCFF429ZQN\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF290TZQ ENCSR000AAI - strand bigWig Dermis blood vessel endothelial cell female child (16 years) and male child (13 years) - strand total RNA-seq signal 2 18 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/5cc036c4-71c0-45de-85bc-31a7399f56f6/ENCFF290TZQ.bigWig\ color 255,37,41\ longLabel Dermis blood vessel endothelial cell female child (16 years) and male child (13 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAI - strand\ track wgEncodeReg4RnaSeq_ENCFF290TZQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF425YUM ENCSR000ALW Signal bigWig Mammary epithelial cell female adult 50 years H3K27ac signal 2 18 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/d5a08878-a4d1-4e44-ae42-5774866a0d26/ENCFF425YUM.bigWig\ color 181,145,0\ longLabel Mammary epithelial cell female adult 50 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ALW Signal\ track wgEncodeReg4Epigenetics_ENCFF425YUM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF332TNJ ENCSR000AMF Signal bigWig H1 CTCF ENCSR000AMF signal 2 18 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/0adf9d86-16d9-44bd-b623-f3aea3b1bb01/ENCFF332TNJ.bigWig\ color 118,158,101\ longLabel H1 CTCF ENCSR000AMF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AMF Signal\ track wgEncodeReg4TfChip_ENCFF332TNJ\ type bigWig\ visibility full\ wgEncodeReg4TxnEpitheliumMinus Epithelium - bigWig Avg. - strand total RNA-seq level of 1 epithelium experiments (tissues and primary cells only) 0 18 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpEpitheliumMinus.bw\ color 221,126,107\ longLabel Avg. - strand total RNA-seq level of 1 epithelium experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 18\ shortLabel Epithelium -\ track wgEncodeReg4TxnEpitheliumMinus\ type bigWig\ heartCardio44G Heart - Cardiomyocyte - Z0000044G bigWig Methylation Atlas: Heart - Cardiomyocyte - Z0000044G 2 18 220 20 60 237 137 157 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartCardio44G.bw\ color 220,20,60\ longLabel Methylation Atlas: Heart - Cardiomyocyte - Z0000044G\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 18\ shortLabel Heart - Cardiomyocyte - Z0000044G\ subGroups cellType=Heart-Cardio dataType=Replicate\ track heartCardio44G\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ netHprcGCA_018466855v1 HG02559.pat netAlign GCA_018466855.1 chainHprcGCA_018466855v1 HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chain Nets 1 18 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02559.pat HG02559.alt.pat.f1_v2 (May 2021 GCA_018466855.1_HG02559.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018466855.1\ parent hprcChainNetViewnet off\ priority 19\ shortLabel HG02559.pat\ subGroups view=net sample=s019 population=afr subpop=acb hap=pat\ track netHprcGCA_018466855v1\ type netAlign GCA_018466855.1 chainHprcGCA_018466855v1\ kova Korea KOVA 5.3k mixed vcfTabix SNV Frequencies: KOVA Korea - 5305 samples, 1.9k WGS+3.4k WES 0 18 0 0 0 127 127 127 0 0 0
Description
\\ The Korean Variant Archive (KOVA)\ contains 1,896 whole genome sequencing and 3,409 whole exome sequencing data from healthy\ individuals of Korean ethnicity. Most of the samples originated from normal tissue of cancer\ patients (40.16%), healthy parents of rare disease patients (28.4%), or healthy volunteers\ (31.44%). Korean ancestry is not broken down further in the INFO field. Coverage 100x for WES, 30x for WGS.\ SVs called with Manta are also available.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ TSV data can be requested on the KOVA Downloads website. Our GitHub repo contains a script that\ converts this format to VCF.\
\ \Methods
\\ Raw reads were aligned to the GRCh38+decoy reference with BWA-MEM v0.7.17 with default\ parameters. Duplicates were marked and coordinates sorted with MarkDuplicatesSpark, then base\ quality scores were recalibrated with BQSRPipelineSpark in GATK v4.1.3.0. Mapping quality control\ metrics were generated with Qualimap v2.2.1. Single-nucleotide variants and small\ insertions/deletions were called per sample with GATK HaplotypeCaller in GVCF mode (-ERC GVCF), and\ joint genotyping was performed by creating a GenomicsDB with GenomicsDBImport and followed GATK\ Best Practices. Variant quality score recalibration (VQSR) retained 99.7% of true SNVs\ and 99.0% of true indels based on training sets (workflow detailed in Supplementary Fig. 1).\ Downstream analyses followed a modified version of the gnomAD quality-control framework and were\ primarily conducted with Hail. After WES and WGS data were merged in Hail, multiallelic variants and\ variants with genotype quality <20, read depth <10, allelic balance <0.2, or overlap with\ low-complexity regions were excluded.\
\\ At UCSC, V7 of the TSV.gz was obtained from the KOVA staff by email and converted to VCF. The file is not\ available for download from our site, but can be requested from the KOVA website.\ The makeDoc file for the varFreqs track documents how all source files were converted.\ Python scripts used for some of the tracks are available on GitHub.\
\ \Credits
\\ Thanks to Insu Jang and the KOVA director for providing variant frequencies in TSV format.\
\ \References
\\
Lee J, Lee J, Jeon S, Lee J, Jang I, Yang JO, Park S, Lee B, Choi J, Choi BO et al.\
\
A database of 5305 healthy Korean individuals reveals genetic and clinical implications for an East\
Asian population.\
Exp Mol Med. 2022 Nov;54(11):1862-1871.\
PMID: 36323850; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 119\ shortLabel ENCFF226FAT_ENCFF582GHH_ENCFF441MGU_ENCFF897TLT\ subGroups organ=bone view=cCREs_view simpleBiosample=osteocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF226FAT_ENCFF582GHH_ENCFF441MGU_ENCFF897TLT\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF772AKN ENCSR000AAJ + strand bigWig Dermis lymphatic vessel endothelial cell female adult (45 years) and male child (6 years) + strand total RNA-seq signal 2 19 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9380f94f-5f11-4644-aa6c-5756a5ab644d/ENCFF772AKN.bigWig\ color 127,133,209\ longLabel Dermis lymphatic vessel endothelial cell female adult (45 years) and male child (6 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAJ + strand\ track wgEncodeReg4RnaSeq_ENCFF772AKN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF194VBQ ENCSR000AMA Peak bigBed 5 HepG2 CTCF peak 4 19 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/df76abed-732e-4483-90e0-4a310efbc9a3/ENCFF194VBQ.bigBed\ color 0,176,240\ labelFields none\ longLabel HepG2 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMA Peak\ track wgEncodeReg4Epigenetics_ENCFF194VBQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF813BQI ENCSR000ANE Peak bigBed 5 Skeletal muscle myoblast male adult (22 years) CTCF peaks 4 19 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/66e5694c-317b-409d-909a-339e3b823a8c/ENCFF813BQI.bigBed\ labelFields none\ longLabel Skeletal muscle myoblast male adult (22 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ANE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF813BQI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4MarkCtcfAllEsophagus Esophagus (all biosamples) bigWig Avg. CTCF level of 5 esophagus experiments (all biosamples) 0 19 159 131 100 207 193 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/esophagusCTCF.bw\ color 159,131,100\ longLabel Avg. CTCF level of 5 esophagus experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 19\ shortLabel Esophagus (all biosamples)\ track wgEncodeReg4MarkCtcfAllEsophagus\ type bigWig\ wgEncodeReg4TxnEsophagusPlus Esophagus + bigWig Avg. + strand total RNA-seq level of 5 esophagus experiments (tissues and primary cells only) 0 19 159 131 100 207 193 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/esophagusPlus.bw\ color 159,131,100\ longLabel Avg. + strand total RNA-seq level of 5 esophagus experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 19\ shortLabel Esophagus +\ track wgEncodeReg4TxnEsophagusPlus\ type bigWig\ heartCardio44K Heart - Cardiomyocyte - Z0000044K bigWig Methylation Atlas: Heart - Cardiomyocyte - Z0000044K 2 19 220 20 60 237 137 157 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartCardio44K.bw\ color 220,20,60\ longLabel Methylation Atlas: Heart - Cardiomyocyte - Z0000044K\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 19\ shortLabel Heart - Cardiomyocyte - Z0000044K\ subGroups cellType=Heart-Cardio dataType=Replicate\ track heartCardio44K\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ chainHprcGCA_018467005v1 HG02486.pat chain GCA_018467005.1 HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 19 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018467005.1\ parent hprcChainNetViewchain off\ priority 21\ shortLabel HG02486.pat\ subGroups view=chain sample=s021 population=afr subpop=acb hap=pat\ track chainHprcGCA_018467005v1\ type chain GCA_018467005.1\ LUSC LUSC bigLolly 12 + Lung squamous cell carcinoma 0 19 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/LUSC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Lung squamous cell carcinoma\ parent gdcCancer off\ priority 19\ shortLabel LUSC\ track LUSC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ mxbFreq Mexico Biobank 6k Array vcfTabix SNV Frequencies: Mexico Biobank - 6,011 individuals, genotyping array 0 19 0 0 0 127 127 127 0 0 0
Description
\\ The Mexico Biobank (MXB) project\ genotyped 6,011 individuals sampled across all 32 states of Mexico during the 2000 National\ Health Survey (ENSA 2000) conducted by the National Institute of Public Health (INSP).\ Genotyping used the Illumina Multi-Ethnic Global Array (MEGA, ~1.8M SNPs), which is\ optimized for admixed populations and enriched for ancestry-informative and medically relevant\ variants. Only autosomal, biallelic SNPs that passed quality control are included. Samples\ came from 898 recruitment sites, and indigenous language speakers were prioritized.\
\ \\ This track shows allele frequencies computed from the phased genotypes. The full\ phased genotype data with haplotype clustering display is available in the\ Mexico Biobank track under Phased Variants.\ Frequencies can also be plotted onto a map on the\ MexVar platform.\ The hg38 data was lifted from hg19 by UCSC (see below).\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ Allele frequencies by geographical state and ancestry are available via\ the MexVar platform.\ Raw genotype data are available under controlled access at the\ EGA (Study: EGAS00001005797; Dataset: EGAD00010002361). For the VCFs, email\ andres.moreno@cinvestav.mx to obtain the data.\
\ \Methods
\\ Data processing included GenomeStudio → PLINK conversion, strand alignment, removal\ of duplicates, update of map positions using dbSNP Build 151 and low-quality\ variants/individuals, and relatedness filtering.\ At UCSC, the phased VCF was lifted from hg19 to hg38 with CrossMap, then allele counts\ (AC, AF, AN) were computed using bcftools fill-tags and genotypes were stripped to produce\ a sites-only frequency VCF.\
\ \\ The makeDoc file documents how the source files of the varFreqs track were converted.\ For some tracks, python scripts were needed and are also available from GitHub.\
\ \Credits
\\ We thank the Center for Research and Advanced Studies (Cinvestav) of Mexico for\ generating and providing the frequency data, the National Institute of Medical\ Sciences and Nutrition (INCMNSZ) for DNA extraction, and the Ministry of Health\ together with the National Institute of Public Health (INSP) for the design and\ implementation of the National Health Survey 2000 (ENSA 2000). We also thank\ the ENSA-Genomics Consortium for their contributions to sample collection and\ data processing that made possible the construction of the MXB genomic resource.\
\ \References
\\
Barberena-Jonas C, Medina-Muñoz SG, Cedillo-Castelán V, Sepúlveda-Morales T,\
Gonzaga-Jáuregui C, ENSA Genomics Consortium, García-García L, Ioannidis AG,\
Moreno-Estrada A.\
\
Clinical genetic variation across Hispanic populations in the Mexican Biobank.\
Nat Med. 2026 Jan 21;.\
DOI: 10.1038/s41591-025-04100-z; PMID:
\
Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Corés CD, Barberena-Jonas C, Medina-Muñoz SG,\
Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L et al.\
\
Mexican Biobank advances population and medical genomics of diverse ancestries.\
Nature. 2023 Oct;622(7984):775-783.\
PMID: 37821706; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 116\ shortLabel ENCFF146ZBO_ENCFF684UUJ_ENCFF900UMO_ENCFF327WOL\ subGroups organ=bone_marrow view=cCREs_view simpleBiosample=NCI-H929 biosampleType=cell_line donor=ENCDO220OYR dataType=typeCcres\ track ENCFF146ZBO_ENCFF684UUJ_ENCFF900UMO_ENCFF327WOL\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF765UYO ENCSR000AAJ - strand bigWig Dermis lymphatic vessel endothelial cell female adult (45 years) and male child (6 years) - strand total RNA-seq signal 2 20 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/41f1850b-fa50-4b94-959a-46a9e96daa84/ENCFF765UYO.bigWig\ color 127,133,209\ longLabel Dermis lymphatic vessel endothelial cell female adult (45 years) and male child (6 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAJ - strand\ track wgEncodeReg4RnaSeq_ENCFF765UYO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF357NFO ENCSR000AMA Signal bigWig HepG2 CTCF signal 2 20 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/74550202-5afe-4e92-bc8a-249e470935fc/ENCFF357NFO.bigWig\ color 0,176,240\ longLabel HepG2 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMA Signal\ track wgEncodeReg4Epigenetics_ENCFF357NFO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF755CPB ENCSR000ANE Signal bigWig Skeletal muscle myoblast male adult (22 years) CTCF ENCSR000ANE signal 2 20 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0d271d27-5959-43c9-b88d-cdf683c52609/ENCFF755CPB.bigWig\ color 137,135,170\ longLabel Skeletal muscle myoblast male adult (22 years) CTCF ENCSR000ANE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ANE Signal\ track wgEncodeReg4TfChip_ENCFF755CPB\ type bigWig\ visibility full\ wgEncodeReg4TxnEsophagusMinus Esophagus - bigWig Avg. - strand total RNA-seq level of 5 esophagus experiments (tissues and primary cells only) 0 20 159 131 100 207 193 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/esophagusMinus.bw\ color 159,131,100\ longLabel Avg. - strand total RNA-seq level of 5 esophagus experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 20\ shortLabel Esophagus -\ track wgEncodeReg4TxnEsophagusMinus\ type bigWig\ wgEncodeRegDnaseUwHbmecPeak HBMEC Pk narrowPeak HBMEC brain microvascular endothelial cell (MEC) DNaseI Peaks from ENCODE 1 20 255 214 85 255 234 170 1 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HBMEC Pk\ subGroups view=a_Peaks cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbmecPeak\ wgEncodeRegDnaseUwHbmecWig HBMEC Sg bigWig 0 11394.7 HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE 0 20 255 214 85 255 234 170 0 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.1627\ shortLabel HBMEC Sg\ subGroups cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHbmecSignal\ track wgEncodeRegDnaseUwHbmecWig\ type bigWig 0 11394.7\ heartCardio44Q Heart - Cardiomyocyte - Z0000044Q bigWig Methylation Atlas: Heart - Cardiomyocyte - Z0000044Q 2 20 220 20 60 237 137 157 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartCardio44Q.bw\ color 220,20,60\ longLabel Methylation Atlas: Heart - Cardiomyocyte - Z0000044Q\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 20\ shortLabel Heart - Cardiomyocyte - Z0000044Q\ subGroups cellType=Heart-Cardio dataType=Replicate\ track heartCardio44Q\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ netHprcGCA_018467005v1 HG02486.pat netAlign GCA_018467005.1 chainHprcGCA_018467005v1 HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chain Nets 1 20 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02486.pat HG02486.alt.pat.f1_v2 (May 2021 GCA_018467005.1_HG02486.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018467005.1\ parent hprcChainNetViewnet off\ priority 21\ shortLabel HG02486.pat\ subGroups view=net sample=s021 population=afr subpop=acb hap=pat\ track netHprcGCA_018467005v1\ type netAlign GCA_018467005.1 chainHprcGCA_018467005v1\ MESO MESO bigLolly 12 + Mesothelioma 0 20 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/MESO.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Mesothelioma\ parent gdcCancer off\ priority 20\ shortLabel MESO\ track MESO\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ alfaVcf NCBI ALFA 408k mixed vcfTabix SNV Frequencies: NCBI ALFA (dbGaP data) - 408k mixed WGS/WES/array, 163M variants 0 20 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab
Description
\\ The NCBI ALlele Frequency\ Aggregator (ALFA) pipeline computes allele frequencies from approved, unrestricted dbGaP studies\ and makes them publicly available through dbSNP. Its goal is to release frequency data from over\ one million dbGaP subjects to aid discoveries involving common and rare variants with biological\ or disease relevance. The R4 release aggregates allele frequencies from 408,709 subjects.\ After conversion to VCF and removal of zero-frequency entries, the UCSC track contains\ 163 million variants (146 million SNPs and 17 million indels), including hundreds of\ thousands of ClinVar variants.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is alfaVcf.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ We converted the NCBI track hub to VCF format; the data is freely available.\ Genotype and associated individual-level data are accessible through the dbGaP\ authorized access request system.\
\ \Methods
\\ The ALFA pipeline processes genotype data from approved, unrestricted dbGaP studies, including\ chip array, exome, and genomic sequencing data. Selected study data undergoes quality assurance\ and transformation to standard VCF format. Variants are converted to SPDI notation and normalized\ using VOCA, then aggregated, remapped, and clustered to existing dbSNP rs identifiers or assigned\ new ones. Sample ancestries are validated using GRAF-pop and assigned to 12 major populations.\ QC exclusions include variants and subjects with call rate <95%, datasets failing Ancestry\ Informative Markers consistency checks, and array datasets with conflicting or flipped allele\ orientation.\
\\ The ALFA R4 bigBed files (904M variants) were converted to VCF using a custom script, retaining\ the 163M variants with non-zero allele frequency (146M SNPs, 17M indels).\ The makeDoc file documents how the source files of the varFreqs track were converted.\ For some tracks, python scripts were also needed; these are available on GitHub.\
\ \References
\\ NCBI ALFA does not yet have a peer-reviewed primary publication. Cite the project as:\ Phan L, Jin Y, Zhang H, Qiang W, Shekhtman E, Shao D et al.\ \ ALFA: Allele Frequency Aggregator.\ National Center for Biotechnology Information, U.S. National Library of Medicine, 10 March 2020.\
\ varRep 1 bigDataUrl /gbdb/hg38/varFreqs/alfa/ALFA.vcf.gz\ dataVersion R4\ longLabel SNV Frequencies: NCBI ALFA (dbGaP data) - 408k mixed WGS/WES/array, 163M variants\ parent varFreqs on\ priority 20\ shortLabel NCBI ALFA 408k mixed\ track alfaVcf\ type vcfTabix\ url https://www.ncbi.nlm.nih.gov/snp/$$#frequency_tab\ urlLabel NCBI Variation Page\ visibility hide\ wgEncodeReg4MarkCtcfAllNerve Nerve (all biosamples) bigWig Avg. CTCF level of 4 nerve experiments (all biosamples) 0 20 160 156 0 207 205 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/nerveCTCF.bw\ color 160,156,0\ longLabel Avg. CTCF level of 4 nerve experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 20\ shortLabel Nerve (all biosamples)\ track wgEncodeReg4MarkCtcfAllNerve\ type bigWig\ wgEncodeReg4DnasePlacenta Placenta bigWig Avg. DNase level of 24 placenta experiments (tissues and primary cells only) 0 20 104 171 71 179 213 163 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpPlacentaDNase.bw\ color 104,171,71\ longLabel Avg. DNase level of 24 placenta experiments (tissues and primary cells only)\ parent wgEncodeReg4Dnase off\ priority 20\ shortLabel Placenta\ track wgEncodeReg4DnasePlacenta\ type bigWig\ wgEncodeReg4AtacAllStomach Stomach (all biosamples) bigWig Avg. ATAC level of 2 stomach experiments (all biosamples) 0 20 145 144 99 200 199 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/stomachATAC.bw\ color 145,144,99\ longLabel Avg. ATAC level of 2 stomach experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 20\ shortLabel Stomach (all biosamples)\ track wgEncodeReg4AtacAllStomach\ type bigWig\ Agilent_Human_Exon_V6_Covered SureSel. V6 P bigBed Agilent - SureSelect All Exon V6 r2 Covered by Probes 0 20 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604514_Covered.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 r2 Covered by Probes\ parent exomeProbesets off\ shortLabel SureSel. V6 P\ track Agilent_Human_Exon_V6_Covered\ type bigBed\ lincRNAsCTTestes_R Testes_R bed 5 + lincRNAs from testes_r 1 20 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from testes_r\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Testes_R\ subGroups view=lincRNAsRefseqExp tissueType=testes_r\ track lincRNAsCTTestes_R\ chainNeoSch1 Hawaiian monk seal Chain chain neoSch1 Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Chained Alignments\ otherDb neoSch1\ parent placentalChainNetViewchain off\ shortLabel Hawaiian monk seal Chain\ subGroups view=chain species=s044 clade=c01\ track chainNeoSch1\ type chain neoSch1\ chainChlSab2 Green monkey Chain chain chlSab2 Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Chained Alignments\ otherDb chlSab2\ parent primateChainNetViewchain off\ shortLabel Green monkey Chain\ subGroups view=chain species=s029 clade=c01\ track chainChlSab2\ type chain chlSab2\ encTfChipPkENCFF814DAF A549 HDAC2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in A549 from ENCODE 3 (ENCFF814DAF) 0 21 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in A549 from ENCODE 3 (ENCFF814DAF)\ parent encTfChipPk off\ shortLabel A549 HDAC2\ subGroups cellType=A549 factor=HDAC2\ track encTfChipPkENCFF814DAF\ wgEncodeReg4MarkH3k4me3AllAdrenalGland Adrenal gland (all biosamples) bigWig Avg. H3K4me3 level of 8 adrenal gland experiments (all biosamples) 0 21 90 179 68 172 217 161 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/adrenalGlandH3K4me3.bw\ color 90,179,68\ longLabel Avg. H3K4me3 level of 8 adrenal gland experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 21\ shortLabel Adrenal gland (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllAdrenalGland\ type bigWig\ wgEncodeRegDnaseUwAg09319Peak AG09319 Pk narrowPeak AG09319 gingival fibroblast DNaseI Peaks from ENCODE 1 21 255 221 85 255 238 170 1 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG09319 Pk\ subGroups view=a_Peaks cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwAg09319Peak\ wgEncodeRegDnaseUwAg09319Wig AG09319 Sg bigWig 0 28099 AG09319 gingival fibroblast DNaseI Signal from ENCODE 0 21 255 221 85 255 238 170 0 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.17288\ shortLabel AG09319 Sg\ subGroups cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ table wgEncodeRegDnaseUwAg09319Signal\ track wgEncodeRegDnaseUwAg09319Wig\ type bigWig 0 28099\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_fwd AorticSmsToFgf2_00hr45minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward 0 21 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_fwd AorticSmsToFgf2_00hr45minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward 1 21 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ gtexCovBreastMammaryTissue Breast Mammary bigWig Breast Mammary Tissue 0 21 0 205 205 127 230 230 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZT9W-2026-SM-51MRA.Breast_Mammary_Tissue.RNAseq.bw\ color 0,205,205\ longLabel Breast Mammary Tissue\ parent gtexCov\ shortLabel Breast Mammary\ track gtexCovBreastMammaryTissue\ cloneEndCOR2A COR2A bed 12 NHGRI-CORIELLE CORIELL-02A-F-39-40KB 0 21 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel NHGRI-CORIELLE CORIELL-02A-F-39-40KB\ parent cloneEndSuper off\ priority 19\ shortLabel COR2A\ subGroups source=corielle\ track cloneEndCOR2A\ type bed 12\ visibility hide\ ENCFF280RMA_ENCFF651WOM_ENCFF262UEH_ENCFF850MLW ENCFF280RMA_ENCFF651WOM_ENCFF262UEH_ENCFF850MLW bigBed 9 + 5 SK-N-SH: (1) cCREs 4 21 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF280RMA_ENCFF651WOM_ENCFF262UEH_ENCFF850MLW.bb\ longLabel SK-N-SH: (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 138\ shortLabel ENCFF280RMA_ENCFF651WOM_ENCFF262UEH_ENCFF850MLW\ subGroups organ=brain view=cCREs_view simpleBiosample=SK-N-SH biosampleType=cell_line donor=ENCDO000ABD dataType=typeCcres\ track ENCFF280RMA_ENCFF651WOM_ENCFF262UEH_ENCFF850MLW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF079OMS ENCSR000AAK + strand bigWig Dermis microvascular lymphatic vessel endothelial cell female adult (38 years) and female adult (64 years) + strand total RNA-seq signal 2 21 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/5cba07b6-1654-4d63-9a50-cd7e87cd1e92/ENCFF079OMS.bigWig\ color 255,37,41\ longLabel Dermis microvascular lymphatic vessel endothelial cell female adult (38 years) and female adult (64 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAK + strand\ track wgEncodeReg4RnaSeq_ENCFF079OMS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF764RHO ENCSR000AMF Peak bigBed 5 H1 CTCF peak 4 21 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/c202c70a-c44b-48a6-82b0-641107335168/ENCFF764RHO.bigBed\ color 0,176,240\ labelFields none\ longLabel H1 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMF Peak\ track wgEncodeReg4Epigenetics_ENCFF764RHO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF356FDN ENCSR000ANO Peak bigBed 5 Fibroblast of lung female child (11 years) and male adult (45 years) CTCF peaks 4 21 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/5a8b19cf-4c40-4fbb-a42e-0c5e1f4ba631/ENCFF356FDN.bigBed\ labelFields none\ longLabel Fibroblast of lung female child (11 years) and male adult (45 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ANO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF356FDN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4MarkH3k27acAllEsophagus Esophagus (all biosamples) bigWig Avg. H3K27ac level of 6 esophagus experiments (all biosamples) 2 21 159 131 100 207 193 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/esophagusH3K27ac.bw\ color 159,131,100\ longLabel Avg. H3K27ac level of 6 esophagus experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 21\ shortLabel Esophagus (all biosamples)\ track wgEncodeReg4MarkH3k27acAllEsophagus\ type bigWig\ wgEncodeReg4TxnEyePlus Eye + bigWig Avg. + strand total RNA-seq level of 1 eye experiments (tissues and primary cells only) 0 21 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/eyePlus.bw\ color 163,127,144\ longLabel Avg. + strand total RNA-seq level of 1 eye experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 21\ shortLabel Eye +\ track wgEncodeReg4TxnEyePlus\ type bigWig\ heartCardio44R Heart - Cardiomyocyte - Z0000044R bigWig Methylation Atlas: Heart - Cardiomyocyte - Z0000044R 2 21 220 20 60 237 137 157 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartCardio44R.bw\ color 220,20,60\ longLabel Methylation Atlas: Heart - Cardiomyocyte - Z0000044R\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 21\ shortLabel Heart - Cardiomyocyte - Z0000044R\ subGroups cellType=Heart-Cardio dataType=Replicate\ track heartCardio44R\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ chainHprcGCA_018467165v1 HG01891.pat chain GCA_018467165.1 HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 21 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018467165.1\ parent hprcChainNetViewchain off\ priority 24\ shortLabel HG01891.pat\ subGroups view=chain sample=s024 population=afr subpop=acb hap=pat\ track chainHprcGCA_018467165v1\ type chain GCA_018467165.1\ gonl Netherlands GoNL 498 WGS vcfTabix SNV Frequencies: Genome of the Netherlands - 250 Dutch trios 0 21 0 0 0 127 127 127 0 0 0
Description
\\ The Genome of the Netherlands (GoNL) is a\ whole-genome sequencing project covering the Dutch population. The cohort was drawn from five\ Dutch biobanks and includes 250 parent-offspring families (231 trios and 19 quartets) from 11 of\ the 12 Dutch provinces. Samples were not selected by phenotype or disease status. This track\ shows allele counts and frequencies from the GRCh38 re-analysis of GoNL, restricted to the 498\ unrelated parents (250 fathers and 248 mothers; two mothers failed QC in the original release).\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API\ can be used; the track name is gonl.\ For bulk download, the VCF is available from\ our download\ server. The original file is also available from\ the GoNL download directory at MolGenis.\
\ \Methods
\\ The track shown here uses the GRCh38 re-analysis (version 1.0). All samples were re-aligned from\ raw reads to a GRCh38 analysis set (GRCh38_no_alt_plus_hs38d1 with PhiX as decoy). The processing\ pipeline is documented in the\ README accompanying the data and differs from the original Nature Genetics\ pipeline (reference below). Per-library reads were trimmed with cutadapt 1.13, aligned with bwa mem 0.7.15, sorted\ with Picard SortSam 2.9.0, and base-quality-recalibrated with GATK BaseRecalibrator 3.7. Per-sample\ files were merged and deduplicated with sambamba 0.6.6, and variants were called per sample with\ GATK HaplotypeCaller 3.7. Per-family GVCFs were merged with GATK CombineGVCFs, and all families\ were jointly genotyped with GATK GenotypeGVCFs 3.7. The GRCh38 callset has not been filtered with\ VQSR and missing genotypes have not been imputed, so it is rougher than the original GRCh37\ release.\
\\ The file\ multisample.parents_only.info_only.vcf.gz was downloaded from\ https://download.molgeniscloud.org/downloads/gonl_public/variants/GoNL_GRCh38_1.0/.\ Of the 31,114,481 records in the source file, 30,904,161 were kept after dropping calls on the\ GRCh38 decoy contigs (chrUn_JTFH01* and similar) and the EBV contig, which are not part of the\ UCSC hg38 assembly. The original chromosome naming already uses the UCSC chr prefix, so\ no renaming was needed. The 2,629,361 multiallelic sites were then split with\ bcftools norm -m-any, with indels left-aligned against the hg38 reference, yielding\ 36,363,474 biallelic records (3,559,402 indels realigned). The maximum observed allele number\ (AN) is 996, which matches the 498 diploid parents in the cohort. Loading documentation is in the\ varFreqs makeDoc file; helper scripts for the broader varFreqs collection\ are in our GitHub scripts directory.\
\ \Credits
\\ Data was generated by the Genome of the Netherlands Consortium and distributed via the\ MOLGENIS infrastructure at the\ University Medical Center Groningen. Thanks to the participants who donated samples and to the\ BBMRI-NL biobanks: LifeLines, Leiden Longevity Study, Netherlands Twin Registry, Rotterdam Study\ and Rucphen Study.\
\ \References
\\ Genome of the Netherlands Consortium.\ \ Whole-genome sequence variation, population structure and demographic history of the Dutch\ population.\ Nat Genet. 2014 Aug;46(8):818-25.\ PMID: 24974849\
\ \ varRep 1 bigDataUrl /gbdb/hg38/varFreqs/gonl/gonl.vcf.gz\ dataVersion GRCh38 1.0\ longLabel SNV Frequencies: Genome of the Netherlands - 250 Dutch trios\ parent varFreqs on\ priority 21\ shortLabel Netherlands GoNL 498 WGS\ track gonl\ type vcfTabix\ visibility hide\ OV OV bigLolly 12 + Ovarian serous cystadenocarcinoma 0 21 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/OV.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Ovarian serous cystadenocarcinoma\ parent gdcCancer off\ priority 21\ shortLabel OV\ track OV\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4MarkCtcfAllOvary Ovary (all biosamples) bigWig Avg. CTCF level of 2 ovary experiments (all biosamples) 0 21 161 126 151 208 190 203 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/ovaryCTCF.bw\ color 161,126,151\ longLabel Avg. CTCF level of 2 ovary experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 21\ shortLabel Ovary (all biosamples)\ track wgEncodeReg4MarkCtcfAllOvary\ type bigWig\ wgEncodeReg4DnaseProstate Prostate bigWig Avg. DNase level of 2 prostate experiments (tissues and primary cells only) 0 21 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpProstateDNase.bw\ color 140,140,140\ longLabel Avg. DNase level of 2 prostate experiments (tissues and primary cells only)\ parent wgEncodeReg4Dnase off\ priority 21\ shortLabel Prostate\ track wgEncodeReg4DnaseProstate\ type bigWig\ Agilent_Human_Exon_V6_Regions SureSel. V6 T bigBed Agilent - SureSelect All Exon V6 r2 Target Regions 0 21 255 36 36 255 145 145 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/S07604514_Regions.bb\ color 255,36,36\ longLabel Agilent - SureSelect All Exon V6 r2 Target Regions\ parent exomeProbesets off\ shortLabel SureSel. V6 T\ track Agilent_Human_Exon_V6_Regions\ type bigBed\ wgEncodeReg4AtacAllTestis Testis (all biosamples) bigWig ATAC level of 1 testis experiment (all biosamples) 0 21 139 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/testisATAC.bw\ color 139,140,140\ longLabel ATAC level of 1 testis experiment (all biosamples)\ parent wgEncodeReg4Atac off\ priority 21\ shortLabel Testis (all biosamples)\ track wgEncodeReg4AtacAllTestis\ type bigWig\ lincRNAsCTThyroid Thyroid bed 5 + lincRNAs from thyroid 1 21 0 60 120 127 157 187 1 0 0 genes 1 longLabel lincRNAs from thyroid\ origAssembly hg19\ parent lincRNAsAllCellType on\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel Thyroid\ subGroups view=lincRNAsRefseqExp tissueType=thyroid\ track lincRNAsCTThyroid\ netNeoSch1 Hawaiian monk seal Net netAlign neoSch1 chainNeoSch1 Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Alignment Net 1 22 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)) Alignment Net\ otherDb neoSch1\ parent placentalChainNetViewnet off\ shortLabel Hawaiian monk seal Net\ subGroups view=net species=s044 clade=c01\ track netNeoSch1\ type netAlign neoSch1 chainNeoSch1\ netChlSab2 Green monkey Net netAlign chlSab2 chainChlSab2 Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Alignment Net 1 22 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Green monkey (Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2)) Alignment Net\ otherDb chlSab2\ parent primateChainNetViewnet off\ shortLabel Green monkey Net\ subGroups view=net species=s029 clade=c01\ track netChlSab2\ type netAlign chlSab2 chainChlSab2\ encTfChipPkENCFF127HJG A549 JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in A549 from ENCODE 3 (ENCFF127HJG) 0 22 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in A549 from ENCODE 3 (ENCFF127HJG)\ parent encTfChipPk off\ shortLabel A549 JUN\ subGroups cellType=A549 factor=JUN\ track encTfChipPkENCFF127HJG\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_rev AorticSmsToFgf2_00hr45minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse 0 22 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_rev AorticSmsToFgf2_00hr45minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse 1 22 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr45min%2c%20biol_rep3%20%28LK12%29.CNhs13571.12841-137B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr45min, biol_rep3 (LK12)_CNhs13571_12841-137B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12841-137B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr45minBiolRep3LK12_CNhs13571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12841-137B6\ urlLabel FANTOM5 Details:\ cloneEndbadEnds Bad end mappings bed 12 Clone end placements dropped at UCSC, map distance 3X median library size 0 22 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Clone end placements dropped at UCSC, map distance 3X median library size\ parent cloneEndSuper off\ priority 24\ shortLabel Bad end mappings\ subGroups source=placements\ track cloneEndbadEnds\ type bed 12\ visibility hide\ wgEncodeReg4MarkH3k4me3AllBloodVessel Blood vessel (all biosamples) bigWig Avg. H3K4me3 level of 14 blood vessel experiments (all biosamples) 0 22 255 37 41 255 146 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/bloodVesselH3K4me3.bw\ color 255,37,41\ longLabel Avg. H3K4me3 level of 14 blood vessel experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 22\ shortLabel Blood vessel (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllBloodVessel\ type bigWig\ gtexCovCellsEBV-transformedlymphocytes Cells EBV lymphoc bigWig Cells EBV-transformed lymphocytes 0 22 238 130 238 246 192 246 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1122O-0003-SM-5Q5DL.Cells_EBV-transformed_lymphocytes.RNAseq.bw\ color 238,130,238\ longLabel Cells EBV-transformed lymphocytes\ parent gtexCov\ shortLabel Cells EBV lymphoc\ track gtexCovCellsEBV-transformedlymphocytes\ ENCFF286QGB_ENCFF835JIA_ENCFF618RAO_ENCFF700SCP ENCFF286QGB_ENCFF835JIA_ENCFF618RAO_ENCFF700SCP bigBed 9 + 5 Neural progenitor cell, female embryo (5 days): (1) cCREs 4 22 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF286QGB_ENCFF835JIA_ENCFF618RAO_ENCFF700SCP.bb\ longLabel Neural progenitor cell, female embryo (5 days): (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 117\ shortLabel ENCFF286QGB_ENCFF835JIA_ENCFF618RAO_ENCFF700SCP\ subGroups organ=brain view=cCREs_view simpleBiosample=neural_progenitor_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF286QGB_ENCFF835JIA_ENCFF618RAO_ENCFF700SCP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF149SKB ENCSR000AAK - strand bigWig Dermis microvascular lymphatic vessel endothelial cell female adult (38 years) and female adult (64 years) - strand total RNA-seq signal 2 22 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b38d5db0-fcac-4d0b-acf3-fe33a31ea8f5/ENCFF149SKB.bigWig\ color 255,37,41\ longLabel Dermis microvascular lymphatic vessel endothelial cell female adult (38 years) and female adult (64 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAK - strand\ track wgEncodeReg4RnaSeq_ENCFF149SKB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF332TNJ ENCSR000AMF Signal bigWig H1 CTCF signal 2 22 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/0adf9d86-16d9-44bd-b623-f3aea3b1bb01/ENCFF332TNJ.bigWig\ color 0,176,240\ longLabel H1 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMF Signal\ track wgEncodeReg4Epigenetics_ENCFF332TNJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF616VTY ENCSR000ANO Signal bigWig Fibroblast of lung female child (11 years) and male adult (45 years) CTCF ENCSR000ANO signal 2 22 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/34341810-c8ad-462b-9e8c-17dc4eeef60e/ENCFF616VTY.bigWig\ color 130,163,45\ longLabel Fibroblast of lung female child (11 years) and male adult (45 years) CTCF ENCSR000ANO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ANO Signal\ track wgEncodeReg4TfChip_ENCFF616VTY\ type bigWig\ visibility full\ wgEncodeReg4TxnEyeMinus Eye - bigWig Avg. - strand total RNA-seq level of 1 eye experiments (tissues and primary cells only) 0 22 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/eyeMinus.bw\ color 163,127,144\ longLabel Avg. - strand total RNA-seq level of 1 eye experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 22\ shortLabel Eye -\ track wgEncodeReg4TxnEyeMinus\ type bigWig\ netHprcGCA_018467165v1 HG01891.pat netAlign GCA_018467165.1 chainHprcGCA_018467165v1 HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chain Nets 1 22 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01891.pat HG01891.alt.pat.f1_v2 (May 2021 GCA_018467165.1_HG01891.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018467165.1\ parent hprcChainNetViewnet off\ priority 24\ shortLabel HG01891.pat\ subGroups view=net sample=s024 population=afr subpop=acb hap=pat\ track netHprcGCA_018467165v1\ type netAlign GCA_018467165.1 chainHprcGCA_018467165v1\ wgEncodeRegDnaseUwHpdlfPeak HPdLF Pk narrowPeak HPdLF periodontal ligament fibroblast DNaseI Peaks from ENCODE 1 22 255 224 85 255 239 170 1 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HPdLF Pk\ subGroups view=a_Peaks cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHpdlfPeak\ wgEncodeRegDnaseUwHpdlfWig HPdLF Sg bigWig 0 11009.1 HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE 0 22 255 224 85 255 239 170 0 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.17804\ shortLabel HPdLF Sg\ subGroups cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ table wgEncodeRegDnaseUwHpdlfSignal\ track wgEncodeRegDnaseUwHpdlfWig\ type bigWig 0 11009.1\ wgEncodeReg4MarkH3k27acAllNerve Nerve (all biosamples) bigWig Avg. H3K27ac level of 4 nerve experiments (all biosamples) 2 22 160 156 0 207 205 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/nerveH3K27ac.bw\ color 160,156,0\ longLabel Avg. H3K27ac level of 4 nerve experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 22\ shortLabel Nerve (all biosamples)\ track wgEncodeReg4MarkH3k27acAllNerve\ type bigWig\ topmed NHLBI TOPMed 10 151k WGS vcfTabix SNV Frequencies: NHLBI TOPMed - 151k WGS 0 22 0 0 0 127 127 127 0 0 0
Description
\\ NHLBI TOPMed (Trans-Omics for Precision\ Medicine) is a program launched by the U.S. National Heart, Lung, and Blood Institute that\ integrates whole-genome sequencing with molecular, clinical, and environmental data from large,\ well-phenotyped cohorts. Its goal is to uncover the biological mechanisms underlying heart, lung,\ blood, and sleep disorders to advance precision medicine and improve population health. Freeze 10\ contains 868,581,653 variants from 150,899 whole genomes.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ VCFs with summarized allele frequencies are available from\ the TOPMED BRAVO website. They require a\ login. The VCFs were downloaded from\ BRAVO.\
\ \Methods
\\
TOPMed whole genome sequencing was performed at multiple NHLBI-funded sequencing centers\
using PCR-free library preparation with 150 bp paired-end reads on Illumina short-read\
platforms, targeting ≥30x mean coverage. Reads were aligned to the GRCh38 reference genome\
(hs38DH, including decoy sequences) using BWA-MEM, followed by duplicate marking with\
Picard MarkDuplicates and base quality score recalibration (BQSR) with GATK. Variant calling\
was performed using the TOPMed GotCloud pipeline (developed at the Center for Statistical\
Genetics, University of Michigan), comprising: (1) per-sample candidate variant detection with\
vt discover2 and normalization with vt normalize; (2) cross-sample variant site\
consolidation using cramore vcf-merge-candidate-variants; (3) joint genotyping across all\
samples; and (4) variant filtering using a Support Vector Machine (SVM) classifier\
(libsvm) trained on positive labels derived from HapMap 3.3 and 1000 Genomes Omni2.5\
array sites, and negative labels derived from Mendelian-inconsistent variants identified\
within the cohort's pedigree structure using vt milk-filter. Sample-level quality\
control included estimation of DNA contamination, genetic ancestry, and biological sex\
using cramore cram-verify-bam (verifyBamID2) and relative X/Y chromosomal depth. Full\
methods for TOPMed freeze 10 are available on the\
TOPMed WGS Methods page.\
\ Documentation on how all source files of the varFreqs track were converted is in the makeDoc file of the track.\ For some tracks, python scripts were necessary and are also available from GitHub.\
\ \References
\\
Taliun D, Harris DN, Kessler MD, Carlson J, Szpiech ZA, Torres R, Taliun SAG, Corvelo A, Gogarten SM,\
Kang HM et al.\
\
Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program.\
Nature. 2021 Feb;590(7845):290-299.\
PMID: 33568819; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 33\ shortLabel ENCFF269VAY_ENCFF346LEZ_ENCFF118OBT_ENCFF536VOI\ subGroups organ=brain view=cCREs_view simpleBiosample=glutamatergic_neuron-_male_adult__53_years__male_adult__53_years__nuclear_fraction biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCcres\ track ENCFF269VAY_ENCFF346LEZ_ENCFF118OBT_ENCFF536VOI\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF114NWW ENCSR000AAL + strand bigWig Nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa female adult (70 years) and male adult (46 years) + strand total RNA-seq signal 2 23 181 131 79 218 193 167 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/d15eeb61-5067-4d84-9e28-3973e0365f4e/ENCFF114NWW.bigWig\ color 181,131,79\ longLabel Nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa female adult (70 years) and male adult (46 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAL + strand\ track wgEncodeReg4RnaSeq_ENCFF114NWW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF021AUI ENCSR000AML Peak bigBed 5 Mammary epithelial cell female adult 50 years H3K4me3 peak 4 23 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/564b2f5b-04f5-4d05-8c75-ef8966b284ff/ENCFF021AUI.bigBed\ color 255,0,0\ longLabel Mammary epithelial cell female adult 50 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AML Peak\ track wgEncodeReg4Epigenetics_ENCFF021AUI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF127SFR ENCSR000ANS Peak bigBed 5 Myotube originated from skeletal muscle myoblast CTCF peaks 4 23 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/11/a5049a2e-beff-4127-8552-522a9faf73de/ENCFF127SFR.bigBed\ labelFields none\ longLabel Myotube originated from skeletal muscle myoblast CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ANS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF127SFR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4MarkH3k4me3AllEsophagus Esophagus (all biosamples) bigWig Avg. H3K4me3 level of 7 esophagus experiments (all biosamples) 0 23 159 131 100 207 193 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/esophagusH3K4me3.bw\ color 159,131,100\ longLabel Avg. H3K4me3 level of 7 esophagus experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 23\ shortLabel Esophagus (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllEsophagus\ type bigWig\ wgEncodeReg4TxnGallbladderPlus Gallbladder + bigWig Avg. + strand total RNA-seq level of 1 gallbladder experiments (tissues and primary cells only) 0 23 103 78 167 179 166 211 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/gallbladderPlus.bw\ color 103,78,167\ longLabel Avg. + strand total RNA-seq level of 1 gallbladder experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 23\ shortLabel Gallbladder +\ track wgEncodeReg4TxnGallbladderPlus\ type bigWig\ wgEncodeRegDnaseUwHcfPeak HCF Pk narrowPeak HCF cardiac fibroblast DNaseI Peaks from ENCODE 1 23 255 229 85 255 242 170 1 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCF Pk\ subGroups view=a_Peaks cellType=HCF treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfPeak\ wgEncodeRegDnaseUwHcfWig HCF Sg bigWig 0 19295.8 HCF cardiac fibroblast DNaseI Signal from ENCODE 0 23 255 229 85 255 242 170 0 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.18546\ shortLabel HCF Sg\ subGroups cellType=HCF treatment=n_a tissue=heart cancer=normal\ table wgEncodeRegDnaseUwHcfSignal\ track wgEncodeRegDnaseUwHcfWig\ type bigWig 0 19295.8\ chainHprcGCA_018505855v1 HG02055.pat chain GCA_018505855.1 HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 23 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505855.1\ parent hprcChainNetViewchain off\ priority 26\ shortLabel HG02055.pat\ subGroups view=chain sample=s026 population=afr subpop=acb hap=pat\ track chainHprcGCA_018505855v1\ type chain GCA_018505855.1\ wgEncodeReg4MarkH3k27acAllOvary Ovary (all biosamples) bigWig Avg. H3K27ac level of 2 ovary experiments (all biosamples) 2 23 161 126 151 208 190 203 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/ovaryH3K27ac.bw\ color 161,126,151\ longLabel Avg. H3K27ac level of 2 ovary experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 23\ shortLabel Ovary (all biosamples)\ track wgEncodeReg4MarkH3k27acAllOvary\ type bigWig\ PCPG PCPG bigLolly 12 + Pheochromocytoma and Paraganglioma 0 23 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/PCPG.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Pheochromocytoma and Paraganglioma\ parent gdcCancer off\ priority 23\ shortLabel PCPG\ track PCPG\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4MarkCtcfAllPlacenta Placenta (all biosamples) bigWig CTCF level of 1 placenta experiment (all biosamples) 0 23 104 171 71 179 213 163 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/placentaCTCF.bw\ color 104,171,71\ longLabel CTCF level of 1 placenta experiment (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 23\ shortLabel Placenta (all biosamples)\ track wgEncodeReg4MarkCtcfAllPlacenta\ type bigWig\ saudi Saudi Genome 302 WGS vcfTabix SNV Frequencies: Saudi Genome Project - 302 WGS samples 0 23 0 0 0 127 127 127 0 0 0
Description
\\ Variant frequencies from 302 whole genomes at 30x coverage from the\ Saudi Genome Program. The genotyping data and imputations from 3,352\ individuals do not seem to be available publicly.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is saudi.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ The original data were downloaded from\ Figshare and converted to VCF.\
\ \Methods
\\ Whole-genome sequencing of 302 Saudi Arabian individuals was performed on the Illumina HiSeq\ X Ten platform using TruSeq Nano DNA library preparation at 30x target coverage. Sequencing and\ initial bioinformatics processing were carried out by deCODE Genetics (Reykjavík, Iceland).\ Reads were aligned to the GRCh38 reference genome using BWA 0.7.10. Per-sample variants\ were called with GATK HaplotypeCaller, then jointly genotyped with CombineGVCFs and\ GenotypeGVCFs. Variant quality score recalibration (VQSR) was applied for both SNPs and indels.\ The final autosomal callset contains 25.5 million variants across the 302 individuals.\
\\ The variant data were downloaded from\ Figshare and converted to VCF format using a custom script.\ The makeDoc file documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were needed; these are also available from GitHub.\
\ \References
\\
Malomane DK, Williams MP, Huber CD, Mangul S, Abedalthagafi M, Chiang CWK.\
\
Patterns of population structure and genetic variation within the Saudi Arabian population.\
bioRxiv. 2025 Jan 13;.\
PMID: 39868174; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 12\ shortLabel ENCFF386FNE_ENCFF768NPJ_ENCFF435NQW_ENCFF541XGP\ subGroups organ=brain view=cCREs_view simpleBiosample=bipolar_neuron__treated_-_male_adult__53_years__treated_with_0_5_ug_mL_doxycycline_hyclate_for_4_days biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCcres\ track ENCFF386FNE_ENCFF768NPJ_ENCFF435NQW_ENCFF541XGP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF945NGT ENCSR000AAL - strand bigWig Nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa female adult (70 years) and male adult (46 years) - strand total RNA-seq signal 2 24 181 131 79 218 193 167 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/26334da9-908f-44bf-a918-d213ec76503d/ENCFF945NGT.bigWig\ color 181,131,79\ longLabel Nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa female adult (70 years) and male adult (46 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAL - strand\ track wgEncodeReg4RnaSeq_ENCFF945NGT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF009GAZ ENCSR000AML Signal bigWig Mammary epithelial cell female adult 50 years H3K4me3 signal 2 24 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/ab9734dc-90da-4280-8eb4-f985ef4765b2/ENCFF009GAZ.bigWig\ color 255,0,0\ longLabel Mammary epithelial cell female adult 50 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AML Signal\ track wgEncodeReg4Epigenetics_ENCFF009GAZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF450CWJ ENCSR000ANS Signal bigWig Myotube originated from skeletal muscle myoblast CTCF ENCSR000ANS signal 2 24 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/055c8082-2eb5-4e1f-865b-c6b60670716e/ENCFF450CWJ.bigWig\ color 137,135,170\ longLabel Myotube originated from skeletal muscle myoblast CTCF ENCSR000ANS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ANS Signal\ track wgEncodeReg4TfChip_ENCFF450CWJ\ type bigWig\ visibility full\ wgEncodeReg4TxnGallbladderMinus Gallbladder - bigWig Avg. - strand total RNA-seq level of 1 gallbladder experiments (tissues and primary cells only) 0 24 103 78 167 179 166 211 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/gallbladderMinus.bw\ color 103,78,167\ longLabel Avg. - strand total RNA-seq level of 1 gallbladder experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 24\ shortLabel Gallbladder -\ track wgEncodeReg4TxnGallbladderMinus\ type bigWig\ wgEncodeRegDnaseUwHcmPeak HCM Pk narrowPeak HCM cardiac myocyte DNaseI Peaks from ENCODE 1 24 255 230 85 255 242 170 1 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCM Pk\ subGroups view=a_Peaks cellType=HCM treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcmPeak\ wgEncodeRegDnaseUwHcmWig HCM Sg bigWig 0 14370.2 HCM cardiac myocyte DNaseI Signal from ENCODE 0 24 255 230 85 255 242 170 0 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.18728\ shortLabel HCM Sg\ subGroups cellType=HCM treatment=n_a tissue=heart cancer=normal\ table wgEncodeRegDnaseUwHcmSignal\ track wgEncodeRegDnaseUwHcmWig\ type bigWig 0 14370.2\ netHprcGCA_018505855v1 HG02055.pat netAlign GCA_018505855.1 chainHprcGCA_018505855v1 HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chain Nets 1 24 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02055.pat HG02055.alt.pat.f1_v2 (May 2021 GCA_018505855.1_HG02055.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505855.1\ parent hprcChainNetViewnet off\ priority 26\ shortLabel HG02055.pat\ subGroups view=net sample=s026 population=afr subpop=acb hap=pat\ track netHprcGCA_018505855v1\ type netAlign GCA_018505855.1 chainHprcGCA_018505855v1\ wgEncodeReg4MarkH3k4me3AllNerve Nerve (all biosamples) bigWig Avg. H3K4me3 level of 4 nerve experiments (all biosamples) 0 24 160 156 0 207 205 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/nerveH3K4me3.bw\ color 160,156,0\ longLabel Avg. H3K4me3 level of 4 nerve experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 24\ shortLabel Nerve (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllNerve\ type bigWig\ wgEncodeReg4MarkH3k27acAllParaythroidGland Parathyroid gland (all biosamples) bigWig Avg. H3K27ac level of 2 parathyroid gland experiments (all biosamples) 2 24 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/paraythroidGlandH3K27ac.bw\ color 130,141,158\ longLabel Avg. H3K27ac level of 2 parathyroid gland experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 24\ shortLabel Parathyroid gland (all biosamples)\ track wgEncodeReg4MarkH3k27acAllParaythroidGland\ type bigWig\ PRAD PRAD bigLolly 12 + Prostate adenocarcinoma 0 24 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/PRAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Prostate adenocarcinoma\ parent gdcCancer off\ priority 24\ shortLabel PRAD\ track PRAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ schema SCHEMA 121k WES Sz vcfTabix SNV Frequencies: SCHEMA Schizophrenia Exome Meta-Analysis - WES 24k cases, 97k controls 0 24 0 0 0 127 127 127 0 0 0 https://schema.broadinstitute.org/
Description
\\ The SCHEMA (Schizophrenia Exome\ Meta-Analysis) consortium is an international collaboration that aggregated and harmonized\ whole-exome sequencing data to study the role of rare coding variants in schizophrenia.\ The dataset includes 24,248 cases and 97,322 controls from diverse global cohorts.\ SCHEMA identified genes with exome-wide significant rare variant burden in schizophrenia,\ which point to the biology of the disorder.\
\ \Data Access
\\ Since the data can be downloaded from the SCHEMA website, and does not seem to be under a license,\ we assume that we are allowed to redistribute it in VCF format.\ The data can be explored on our website interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is schema.\ For bulk download, the VCF file can be obtained from\ our download server.\
\\ Summary statistics and variant-level results are also available from the\ SCHEMA Browser.\
\ \Methods
\\ The SCHEMA (Schizophrenia Exome Meta-Analysis) consortium aggregated whole-exome sequencing\ data from 24,248 schizophrenia cases and 97,322 controls (including non-psychiatric,\ non-neurological samples from the gnomAD consortium) across multiple international cohorts.\ Exome sequencing was performed using various capture platforms and Illumina sequencing\ instruments across cohorts sequenced over approximately a decade. Sequence data were\ uniformly reprocessed through the BWA-Picard-GATK best practices pipeline as part of the\ gnomAD v2 infrastructure, including alignment to GRCh37/hg19, duplicate marking, base\ quality score recalibration, and per-sample variant calling with GATK HaplotypeCaller,\ followed by joint genotyping across all samples. A novel exon-by-exon coverage estimation\ pipeline was developed to account for differences in capture technology across sequencing\ batches, and both site-level and genotype-level quality filters were applied. Protein-truncating\ variants (PTVs) were annotated using LOFTEE (Loss-Of-Function Transcript Effect Estimator),\ and missense variant deleteriousness was scored using MPC (Missense badness, PolyPhen-2,\ and Constraint). Gene-level association testing combined: (1) a case-control rare variant\ burden test aggregating ultra-rare PTVs (Class I: PTV and MPC > 3; Class II: missense\ MPC 2–3) across 18,321 protein-coding genes; and (2) de novo variant enrichment\ from 3,402 schizophrenia proband-parent trios assessed via a Poisson rate test against\ gnomAD-derived baseline mutation rates; with the two components combined using a weighted\ Z-score meta-analysis. This identified 10 genes at exome-wide significance (P < 2.14\ × 10-6) with odds ratios for PTVs ranging from 3 to 50, and 32 genes at\ FDR < 5%. Full data are available at\ schema.broadinstitute.org\ (Singh, Neale, Daly & the SCHEMA Consortium,\ Nature 2022).\
\\ We downloaded the TSV data from the SCHEMA website\ and converted it to VCF format using a custom Python script. The VCF was lifted to hg38 using our hg19ToHg38 chain\ file. \ We provide documentation that indicates how all source files of the varFreqs track were converted in the makeDoc file of the track.\ For some tracks, python scripts were necessary and are also available from GitHub.\
\ \References
\\
Singh T, Poterba T, Curtis D, Akil H, Al Eissa M, Barchas JD, Bass N, Bigdeli TB, Breen G,\
Bromet EJ et al.\
\
Exome sequencing identifies rare coding variants in 10 genes which confer substantial risk for\
schizophrenia.\
Nature. 2022 Apr;604(7906):509-516.\
PMID: 35396579; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 11\ shortLabel ENCFF926MIK_ENCFF153BJG_ENCFF751GCN_ENCFF569HGW\ subGroups organ=brain view=cCREs_view simpleBiosample=astrocyte-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCcres\ track ENCFF926MIK_ENCFF153BJG_ENCFF751GCN_ENCFF569HGW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF811OBN ENCSR000AAM + strand bigWig Pulmonary artery endothelial cell male adult (23 years) and male adult (52 years) + strand total RNA-seq signal 2 25 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/fe8de5fe-1422-4c6e-8991-7966d7257b8a/ENCFF811OBN.bigWig\ color 255,37,41\ longLabel Pulmonary artery endothelial cell male adult (23 years) and male adult (52 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAM + strand\ track wgEncodeReg4RnaSeq_ENCFF811OBN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF705YRV ENCSR000AMO Peak bigBed 5 HepG2 H3K27ac peak 4 25 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/886e9a54-76d4-4b4c-a85f-206cb566c990/ENCFF705YRV.bigBed\ color 181,145,0\ longLabel HepG2 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMO Peak\ track wgEncodeReg4Epigenetics_ENCFF705YRV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF255ASZ ENCSR000AOA Peak bigBed 5 HeLa-S3 CTCF peaks 4 25 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/dd8260bd-23e6-4740-87da-495270544b41/ENCFF255ASZ.bigBed\ labelFields none\ longLabel HeLa-S3 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AOA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF255ASZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4TxnHeartPlus Heart + bigWig Avg. + strand total RNA-seq level of 36 heart experiments (tissues and primary cells only) 0 25 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpHeartPlus.bw\ color 116,50,165\ longLabel Avg. + strand total RNA-seq level of 36 heart experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 25\ shortLabel Heart +\ track wgEncodeReg4TxnHeartPlus\ type bigWig\ chainHprcGCA_018505865v1 HG02109.pat chain GCA_018505865.1 HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 25 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505865.1\ parent hprcChainNetViewchain off\ priority 27\ shortLabel HG02109.pat\ subGroups view=chain sample=s027 population=afr subpop=acb hap=pat\ track chainHprcGCA_018505865v1\ type chain GCA_018505865.1\ wgEncodeRegDnaseUwHpafPeak HPAF Pk narrowPeak HPAF pulmonary artery fibroblast DNaseI Peaks from ENCODE 1 25 255 232 85 255 243 170 1 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HPAF Pk\ subGroups view=a_Peaks cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHpafPeak\ wgEncodeRegDnaseUwHpafWig HPAF Sg bigWig 0 11225.6 HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE 0 25 255 232 85 255 243 170 0 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.18958\ shortLabel HPAF Sg\ subGroups cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHpafSignal\ track wgEncodeRegDnaseUwHpafWig\ type bigWig 0 11225.6\ cloneEndmultipleMaps Multiple mappings bed 12 Clone end placements that map to multiple locations in the genome 0 25 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel Clone end placements that map to multiple locations in the genome\ parent cloneEndSuper off\ priority 23\ shortLabel Multiple mappings\ subGroups source=placements\ track cloneEndmultipleMaps\ type bed 12\ visibility hide\ wgEncodeReg4MarkH3k4me3AllOvary Ovary (all biosamples) bigWig Avg. H3K4me3 level of 2 ovary experiments (all biosamples) 0 25 161 126 151 208 190 203 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/ovaryH3K4me3.bw\ color 161,126,151\ longLabel Avg. H3K4me3 level of 2 ovary experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 25\ shortLabel Ovary (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllOvary\ type bigWig\ wgEncodeReg4MarkH3k27acAllPlacenta Placenta (all biosamples) bigWig Avg. H3K27ac level of 10 placenta experiments (all biosamples) 2 25 104 171 71 179 213 163 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/placentaH3K27ac.bw\ color 104,171,71\ longLabel Avg. H3K27ac level of 10 placenta experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 25\ shortLabel Placenta (all biosamples)\ track wgEncodeReg4MarkH3k27acAllPlacenta\ type bigWig\ READ READ bigLolly 12 + Rectum adenocarcinoma 0 25 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/READ.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Rectum adenocarcinoma\ parent gdcCancer off\ priority 25\ shortLabel READ\ track READ\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ sfariSparkWgs SFARI SPARK 12k WGS vcfTabix SNV Frequencies: SFARI SPARK - 12,519 WGS 0 25 0 0 0 127 127 127 0 0 0
Description
\\ The Simons Foundation Autism Research\ Initiative (SFARI) recruited a large cohort of families with autistic children who provided\ DNA samples and phenotypes. 54,558 families, parents and their children were sequenced, a total\ of 142,357 individuals with whole-exome (WES) and 12,519 with whole-genome sequencing (WGS).\ The data contains 32,559 trios and 8,895 quads (one sibling without autism), and 824 twins.\
\ \\ The same frequencies shown here are also available publicly on the\ SFARI Genome Browser.\ See (SPARK et al, Neuron 2018) for details.\
\ \Phenotype-stratified counts
\\ In addition to the overall allele count (AC), allele number (AN), and allele\ frequency (AF), each variant record carries counts split by autism status\ (the asd column of the SPARK individual registration file):\
\- \
- AC_AUT, AN_AUT, AF_AUT — individuals\ coded as autistic (asd=TRUE). \
- AC_NON_AUT, AN_NON_AUT, AF_NON_AUT —\ individuals coded as non-autistic (asd=FALSE); these are\ mostly parents and unaffected siblings of the probands. \
\ A small minority of samples have a blank asd value and so contribute\ only to the overall AC/AN/AF, not to either group total.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ Allele frequencies can also be displayed on the\ SFARI Genome Browser.\ Full CRAMs and VCFs with genotypes are available from\ SFARI Base.\ They require a data access request, which is usually reviewed quickly. More information is\ available in the\ SPARK Welcome Packet.\
\ \Methods
\ \The genome browser track project was approved by the Simons Foundation under request\ number 14584.1. WES and WGS data were downloaded from\ SFARI Base.\ pVCFs were downloaded, anonymized with a script using bcftools and its "fill-tags" plugin and\ normalized. There was no minimum allele frequency cutoff.\ The ASD-status sample-group file derived from the SPARK individuals_registration\ TSV was passed to fill-tags via its -S option, which adds the per-group\ AC_AUT/AN_AUT/AF_AUT and AC_NON_AUT/AN_NON_AUT/AF_NON_AUT\ tags alongside the overall AC/AN/AF.
\ \The methods are documented as follows by SFARI:
\- \
- \ WGS:\ This release consists of sequence and variant call data for 12,519\ unique individuals, of which 12,517 (99.98%) have available genome-wide\ SNP genotype data. Sequencing and genotyping of all samples in this\ release was performed at New York Genome Center (NYGC). DNA from saliva\ samples were extracted and prepared with PCR-free methods and sequenced\ with paired-end sequencing of 150 bases on the Illumina NovaSeq 6000\ system. Alignment of reads to the human reference genome version\ GRCh38, duplicate read marking, and Base Quality Score Recalibration\ (BQSR) were performed by New York Genome Center (NYGC). Whole-genome\ sequencing data were processed using a standardized, functionally\ equivalent CCDG pipeline with alignment to the GRCh38DH (1000 Genomes)\ reference using BWA-MEM v0.7.15 (deterministic settings, no -M, use of\ .alt contigs), Picard-equivalent duplicate marking (Picard ≥2.4.1 or\ equivalent), no indel realignment, and base quality score recalibration\ with GATK (dbSNP138, Mills and 1000G gold-standard indels, known\ indels). Final outputs were stored as lossless CRAM files with\ complete SAM-compliant read-group annotations and mandatory 4-bin\ base-quality compression (Q2—6, 10, 20, 30), and all implementations\ were validated for functional equivalence across centers before use.\ Variant Calling was performed using DeepVariant. See\ CCDG pipeline details.\ \
- \ WES: This release contains\ sequence data for 142,357 individuals and genotyping data for\ 141,368 individuals. DNA was sequenced from saliva for all\ samples and all participants consented to having their genetic\ data shared by Regeneron. Exomes for all samples were sequenced with\ short-read, paired-end sequencing of 150 bases on Illumina\ NovaSeq 6000 machines using S2/S4 flow cells. Sequencing and\ genotyping was performed across nine batches (WES1 through\ WES9) at the Regeneron Genetics Center (RGC) and integrated\ together for this data release. All sequencing batches were\ processed using the same DNA extraction methods and sequencing\ machines, however two different exome capture panels were used,\ as described below. Genotyping was performed using a SNP\ genotyping array for WES1 through WES4 and using\ "genotyping-by-sequencing" (GxS) for WES5 through WES9. The\ first four sequencing batches were sequenced at Regeneron using\ custom NEB/Kapa reagents with the IDT (Integrated DNA\ Technologies) xGen capture platform, including custom exome\ capture regions. Samples starting with batch WES5 were\ sequenced using the Twist Bioscience Human\ Comprehensive Exome panel, combined with spike-ins for\ sequencing genotyping sites (see Genotyping Methods), the full\ mitochondrial genome, and coverage boosted at selected sites\ for assaying clonal hematopoiesis of indeterminate potential\ (CHIP). SFARI performed SNV/indel calling via DeepVariant and\ GATK to generate gVCFs, pairwise relatedness inferred using\ PLINK v1.9 IBD estimates from common SNPs (AF ≥ 0.01, dbSNP\ v151) with ≥15% relatedness flagged, and comprehensive\ individual- and family-level quality control executed using the\ internal GenomeCheckMate pipeline to exclude samples based on\ contamination (≥5%), insufficient coverage (<20x in <80% of\ targets), sex discordance, pedigree/IBD inconsistencies,\ unregistered relationships, unexpected duplicates, or excess\ relatedness, after which QC-passing individuals (selecting the\ most recent passing sample per person) were retained for\ variant calling and joint genotyping.\ \
\ The makeDoc file documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were necessary and are also available from GitHub.\
\ \References
\\
SPARK Consortium. Electronic address: pfeliciano@simonsfoundation.org, SPARK Consortium.\
\
SPARK: A US Cohort of 50,000 Families to Accelerate Autism Research.\
Neuron. 2018 Feb 7;97(3):488-493.\
PMID: 29420931; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 10\ shortLabel ENCFF963PFR_ENCFF577BWJ_ENCFF643ZMC_ENCFF714NPP\ subGroups organ=brain view=cCREs_view simpleBiosample=astrocyte biosampleType=primary_cell donor=ENCDO916IIE dataType=typeCcres\ track ENCFF963PFR_ENCFF577BWJ_ENCFF643ZMC_ENCFF714NPP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF067VBH ENCSR000AAM - strand bigWig Pulmonary artery endothelial cell male adult (23 years) and male adult (52 years) - strand total RNA-seq signal 2 26 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/48a290ca-9b66-490d-972f-800422d39d10/ENCFF067VBH.bigWig\ color 255,37,41\ longLabel Pulmonary artery endothelial cell male adult (23 years) and male adult (52 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAM - strand\ track wgEncodeReg4RnaSeq_ENCFF067VBH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF795ONN ENCSR000AMO Signal bigWig HepG2 H3K27ac signal 2 26 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/c49cad4b-4823-4d4e-ab07-f9645aa098c6/ENCFF795ONN.bigWig\ color 181,145,0\ longLabel HepG2 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMO Signal\ track wgEncodeReg4Epigenetics_ENCFF795ONN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF179RSE ENCSR000AOA Signal bigWig HeLa-S3 CTCF ENCSR000AOA signal 2 26 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a20f696c-35bd-4727-a300-8329bcab5299/ENCFF179RSE.bigWig\ color 186,111,165\ longLabel HeLa-S3 CTCF ENCSR000AOA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AOA Signal\ track wgEncodeReg4TfChip_ENCFF179RSE\ type bigWig\ visibility full\ wgEncodeReg4TxnHeartMinus Heart - bigWig Avg. - strand total RNA-seq level of 36 heart experiments (tissues and primary cells only) 0 26 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpHeartMinus.bw\ color 116,50,165\ longLabel Avg. - strand total RNA-seq level of 36 heart experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 26\ shortLabel Heart -\ track wgEncodeReg4TxnHeartMinus\ type bigWig\ netHprcGCA_018505865v1 HG02109.pat netAlign GCA_018505865.1 chainHprcGCA_018505865v1 HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chain Nets 1 26 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02109.pat HG02109.alt.pat.f1_v2 (May 2021 GCA_018505865.1_HG02109.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505865.1\ parent hprcChainNetViewnet off\ priority 27\ shortLabel HG02109.pat\ subGroups view=net sample=s027 population=afr subpop=acb hap=pat\ track netHprcGCA_018505865v1\ type netAlign GCA_018505865.1 chainHprcGCA_018505865v1\ lungBronSmMusc421 Lung Bronchus - Smooth Muscle - Z00000421 bigWig Methylation Atlas: Lung Bronchus - Smooth Muscle - Z00000421 2 26 205 92 92 230 173 173 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungBronSmMusc421.bw\ color 205,92,92\ longLabel Methylation Atlas: Lung Bronchus - Smooth Muscle - Z00000421\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 26\ shortLabel Lung Bronchus - Smooth Muscle - Z00000421\ subGroups cellType=Smooth-Musc dataType=Replicate\ track lungBronSmMusc421\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k4me3AllParaythroidGland Parathyroid gland (all biosamples) bigWig H3K4me3 level of 1 parathyroid gland experiment (all biosamples) 0 26 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/paraythroidGlandH3K4me3.bw\ color 130,141,158\ longLabel H3K4me3 level of 1 parathyroid gland experiment (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 26\ shortLabel Parathyroid gland (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllParaythroidGland\ type bigWig\ cloneEndRP11 RP11 bed 12 RPCI BAC library 11 0 26 0 0 0 127 127 127 0 0 0 map 1 colorByStrand 0,0,128 0,128,0\ longLabel RPCI BAC library 11\ parent cloneEndSuper on\ priority 21\ shortLabel RP11\ subGroups source=rpci\ track cloneEndRP11\ type bed 12\ visibility hide\ SARC SARC bigLolly 12 + Sarcoma 0 26 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/SARC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Sarcoma\ parent gdcCancer off\ priority 26\ shortLabel SARC\ track SARC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ sfariSparkExomes SFARI SPARK 140k WES vcfTabix SNV Frequencies: SFARI SPARK - 140k WES 0 26 0 0 0 127 127 127 0 0 0
Description
\\ The Simons Foundation Autism Research\ Initiative (SFARI) recruited a large cohort of families with autistic children who provided\ DNA samples and phenotypes. 54,558 families, parents and their children were sequenced, a total\ of 142,357 individuals with whole-exome (WES) and 12,519 with whole-genome sequencing (WGS).\ The data contains 32,559 trios and 8,895 quads (one sibling without autism), and 824 twins.\
\ \\ The same frequencies shown here are also available publicly on the\ SFARI Genome Browser.\ See (SPARK et al, Neuron 2018) for details.\
\ \Phenotype-stratified counts
\\ In addition to the overall allele count (AC), allele number (AN), and allele\ frequency (AF), each variant record carries counts split by autism status\ (the asd column of the SPARK individual registration file):\
\- \
- AC_AUT, AN_AUT, AF_AUT — individuals\ coded as autistic (asd=TRUE). \
- AC_NON_AUT, AN_NON_AUT, AF_NON_AUT —\ individuals coded as non-autistic (asd=FALSE); these are\ mostly parents and unaffected siblings of the probands. \
\ A small minority of samples have a blank asd value and so contribute\ only to the overall AC/AN/AF, not to either group total.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ Allele frequencies can also be displayed on the\ SFARI Genome Browser.\ Full CRAMs and VCFs with genotypes are available from\ SFARI Base.\ They require a data access request, which is usually reviewed quickly. More information is\ available in the\ SPARK Welcome Packet.\
\ \Methods
\ \The genome browser track project was approved by the Simons Foundation under request\ number 14584.1. WES and WGS data were downloaded from\ SFARI Base.\ pVCFs were downloaded, anonymized with a script using bcftools and its "fill-tags" plugin and\ normalized. There was no minimum allele frequency cutoff.\ The ASD-status sample-group file derived from the SPARK individuals_registration\ TSV was passed to fill-tags via its -S option, which adds the per-group\ AC_AUT/AN_AUT/AF_AUT and AC_NON_AUT/AN_NON_AUT/AF_NON_AUT\ tags alongside the overall AC/AN/AF.
\ \The methods are documented as follows by SFARI:
\- \
- \ WGS:\ This release consists of sequence and variant call data for 12,519\ unique individuals, of which 12,517 (99.98%) have available genome-wide\ SNP genotype data. Sequencing and genotyping of all samples in this\ release was performed at New York Genome Center (NYGC). DNA from saliva\ samples were extracted and prepared with PCR-free methods and sequenced\ with paired-end sequencing of 150 bases on the Illumina NovaSeq 6000\ system. Alignment of reads to the human reference genome version\ GRCh38, duplicate read marking, and Base Quality Score Recalibration\ (BQSR) were performed by New York Genome Center (NYGC). Whole-genome\ sequencing data were processed using a standardized, functionally\ equivalent CCDG pipeline with alignment to the GRCh38DH (1000 Genomes)\ reference using BWA-MEM v0.7.15 (deterministic settings, no -M, use of\ .alt contigs), Picard-equivalent duplicate marking (Picard ≥2.4.1 or\ equivalent), no indel realignment, and base quality score recalibration\ with GATK (dbSNP138, Mills and 1000G gold-standard indels, known\ indels). Final outputs were stored as lossless CRAM files with\ complete SAM-compliant read-group annotations and mandatory 4-bin\ base-quality compression (Q2—6, 10, 20, 30), and all implementations\ were validated for functional equivalence across centers before use.\ Variant Calling was performed using DeepVariant. See\ CCDG pipeline details.\ \
- \ WES: This release contains\ sequence data for 142,357 individuals and genotyping data for\ 141,368 individuals. DNA was sequenced from saliva for all\ samples and all participants consented to having their genetic\ data shared by Regeneron. Exomes for all samples were sequenced with\ short-read, paired-end sequencing of 150 bases on Illumina\ NovaSeq 6000 machines using S2/S4 flow cells. Sequencing and\ genotyping was performed across nine batches (WES1 through\ WES9) at the Regeneron Genetics Center (RGC) and integrated\ together for this data release. All sequencing batches were\ processed using the same DNA extraction methods and sequencing\ machines, however two different exome capture panels were used,\ as described below. Genotyping was performed using a SNP\ genotyping array for WES1 through WES4 and using\ "genotyping-by-sequencing" (GxS) for WES5 through WES9. The\ first four sequencing batches were sequenced at Regeneron using\ custom NEB/Kapa reagents with the IDT (Integrated DNA\ Technologies) xGen capture platform, including custom exome\ capture regions. Samples starting with batch WES5 were\ sequenced using the Twist Bioscience Human\ Comprehensive Exome panel, combined with spike-ins for\ sequencing genotyping sites (see Genotyping Methods), the full\ mitochondrial genome, and coverage boosted at selected sites\ for assaying clonal hematopoiesis of indeterminate potential\ (CHIP). SFARI performed SNV/indel calling via DeepVariant and\ GATK to generate gVCFs, pairwise relatedness inferred using\ PLINK v1.9 IBD estimates from common SNPs (AF ≥ 0.01, dbSNP\ v151) with ≥15% relatedness flagged, and comprehensive\ individual- and family-level quality control executed using the\ internal GenomeCheckMate pipeline to exclude samples based on\ contamination (≥5%), insufficient coverage (<20x in <80% of\ targets), sex discordance, pedigree/IBD inconsistencies,\ unregistered relationships, unexpected duplicates, or excess\ relatedness, after which QC-passing individuals (selecting the\ most recent passing sample per person) were retained for\ variant calling and joint genotyping.\ \
\ The makeDoc file documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were necessary and are also available from GitHub.\
\ \References
\\
SPARK Consortium. Electronic address: pfeliciano@simonsfoundation.org, SPARK Consortium.\
\
SPARK: A US Cohort of 50,000 Families to Accelerate Autism Research.\
Neuron. 2018 Feb 7;97(3):488-493.\
PMID: 29420931; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 106\ shortLabel ENCFF796XMI_ENCFF679AWS_ENCFF703DMY_ENCFF782LSR\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO006DAA dataType=typeCcres\ track ENCFF796XMI_ENCFF679AWS_ENCFF703DMY_ENCFF782LSR\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF295TQL ENCSR000AAN + strand bigWig Smooth muscle cell of the pulmonary artery male adult (26 years) and male adult (28 years) + strand total RNA-seq signal 2 27 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/44d61b35-a1d7-4762-85a0-a7709f8def17/ENCFF295TQL.bigWig\ color 255,37,41\ longLabel Smooth muscle cell of the pulmonary artery male adult (26 years) and male adult (28 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAN + strand\ track wgEncodeReg4RnaSeq_ENCFF295TQL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF390IOE ENCSR000AMR Peak bigBed 5 Fibroblast of lung female child 11 years and male adult 45 years H3K27ac peak 4 27 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/3d1d8b46-6753-4210-9407-40923fc50349/ENCFF390IOE.bigBed\ color 181,145,0\ longLabel Fibroblast of lung female child 11 years and male adult 45 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMR Peak\ track wgEncodeReg4Epigenetics_ENCFF390IOE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF861WUP ENCSR000AOO Peak bigBed 5 Astrocyte CTCF peaks 4 27 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/09/fdb4ba35-3019-44db-b086-0898436fa047/ENCFF861WUP.bigBed\ labelFields none\ longLabel Astrocyte CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AOO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF861WUP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeRegDnaseUwHcpepicPeak HCPEpiC Pk narrowPeak HCPEpiC choroid plexus epithelium DNaseI Peaks from ENCODE 1 27 255 242 85 255 248 170 1 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCPEpiC Pk\ subGroups view=a_Peaks cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHcpepicPeak\ wgEncodeRegDnaseUwHcpepicWig HCPEpiC Sg bigWig 0 13163.5 HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE 0 27 255 242 85 255 248 170 0 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.20382\ shortLabel HCPEpiC Sg\ subGroups cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ table wgEncodeRegDnaseUwHcpepicSignal\ track wgEncodeRegDnaseUwHcpepicWig\ type bigWig 0 13163.5\ chainHprcGCA_018852595v1 HG02145.pat chain GCA_018852595.1 HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 27 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018852595.1\ parent hprcChainNetViewchain off\ priority 30\ shortLabel HG02145.pat\ subGroups view=chain sample=s030 population=afr subpop=acb hap=pat\ track chainHprcGCA_018852595v1\ type chain GCA_018852595.1\ wgEncodeReg4TxnKidneyPlus Kidney + bigWig Avg. + strand total RNA-seq level of 8 kidney experiments (tissues and primary cells only) 0 27 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpKidneyPlus.bw\ color 92,161,153\ longLabel Avg. + strand total RNA-seq level of 8 kidney experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn\ priority 27\ shortLabel Kidney +\ track wgEncodeReg4TxnKidneyPlus\ type bigWig\ wgEncodeReg4MarkH3k4me3AllPlacenta Placenta (all biosamples) bigWig Avg. H3K4me3 level of 11 placenta experiments (all biosamples) 0 27 104 171 71 179 213 163 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/placentaH3K4me3.bw\ color 104,171,71\ longLabel Avg. H3K4me3 level of 11 placenta experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 27\ shortLabel Placenta (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllPlacenta\ type bigWig\ prostSmMusc41Y Prostate - Smooth Muscle - Z0000041Y bigWig Methylation Atlas: Prostate - Smooth Muscle - Z0000041Y 2 27 205 92 92 230 173 173 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/prostSmMusc41Y.bw\ color 205,92,92\ longLabel Methylation Atlas: Prostate - Smooth Muscle - Z0000041Y\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 27\ shortLabel Prostate - Smooth Muscle - Z0000041Y\ subGroups cellType=Smooth-Musc dataType=Replicate\ track prostSmMusc41Y\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ sgdpFreq SGDP 279 WGS vcfTabix SNV Frequencies: Simons Genome Diversity Project - 279 WGS, 142 populations 0 27 0 0 0 127 127 127 0 0 0
Description
\\ The Simons Genome Diversity Project (SGDP), funded by the Simons Foundation,\ sequenced high-coverage genomes from 300 individuals (279 in this track) representing 142 diverse\ and often indigenous populations worldwide. Its goal was to capture the full range of human\ genetic diversity to better understand population history, migration, and adaptation. The\ sampling was designed to cover as much anthropological, linguistic and cultural diversity\ as possible, so it includes many deeply divergent human populations that are not well\ represented in other datasets.\
\ \\ This track shows allele frequencies only. The full phased genotype data with haplotype\ clustering display is available in the\ SGDP track under Phased Variants.\ Not all SGDP data is public, so this track contains only 279 genomes.\ The hg38 data was lifted from hg19.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For programmatic access, our REST API can be used; the\ track name is sgdpFreq.\ For bulk download, the VCF file can be obtained from\ our download server.\
\ \The original source VCFs are available from\ https://sharehost.hms.harvard.edu/genetics/reich_lab/sgdp/vcf_variants/.\
\ \Methods
\\ High-coverage whole-genome sequencing of 300 individuals (279 publicly available) from 142\ diverse populations was performed on Illumina instruments using PCR-free library preparation at\ an average depth of 43x. Reads were aligned to the hs37d5 reference (GRCh37 with decoy\ sequences) using BWA-MEM 0.7.12. SNP genotyping was performed using GATK\ HaplotypeCaller with joint genotyping across all samples. (The Mallick 2016 release also\ includes an independent indel callset generated with FermiKit; indels are not carried in\ this track.)\
\\ The per-sample VCFs were merged with bcftools and lifted to hg38 with CrossMap. At UCSC,\ genotypes were stripped to produce a sites-only frequency VCF that keeps the AC, AF, and AN\ INFO fields. The deployed file contains 44,756,737 SNV records (601,775 of which represent\ multiallelic sites split into separate biallelic records). Indels from the source callset\ are not included.\ The conversion steps for all source files are documented in the makeDoc file of the track.\ Python scripts are also available from GitHub.\
\ \Credits
\\ This project was funded by the Simons Foundation. Thanks to David Reich and Swapan\ Mallick for help with importing the data.\
\ \References
\\
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S,\
Tandon A et al.\
\
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.\
Nature. 2016 Oct 13;538(7624):201-206.\
PMID: 27654912; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 86\ shortLabel ENCFF799QGM_ENCFF436OWL_ENCFF484YUA_ENCFF685MPU\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO033BMB dataType=typeCcres\ track ENCFF799QGM_ENCFF436OWL_ENCFF484YUA_ENCFF685MPU\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF492BDO ENCSR000AAN - strand bigWig Smooth muscle cell of the pulmonary artery male adult (26 years) and male adult (28 years) - strand total RNA-seq signal 2 28 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/247cfc59-8610-4ee9-bfbe-ee6d5c0266a6/ENCFF492BDO.bigWig\ color 255,37,41\ longLabel Smooth muscle cell of the pulmonary artery male adult (26 years) and male adult (28 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAN - strand\ track wgEncodeReg4RnaSeq_ENCFF492BDO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF734YQE ENCSR000AMR Signal bigWig Fibroblast of lung female child 11 years and male adult 45 years H3K27ac signal 2 28 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/3c53bef8-7f70-4bf5-87d2-8c802c10c262/ENCFF734YQE.bigWig\ color 181,145,0\ longLabel Fibroblast of lung female child 11 years and male adult 45 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMR Signal\ track wgEncodeReg4Epigenetics_ENCFF734YQE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF714NPP ENCSR000AOO Signal bigWig Astrocyte CTCF ENCSR000AOO signal 2 28 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/51dd93dd-2907-46be-ac82-6e34d0a482c5/ENCFF714NPP.bigWig\ color 155,155,18\ longLabel Astrocyte CTCF ENCSR000AOO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AOO Signal\ track wgEncodeReg4TfChip_ENCFF714NPP\ type bigWig\ visibility full\ gtexCovEsophagusGastroesophagealJunction Esoph Gastroes Junc bigWig Esophagus Gastroesophageal Junction 0 28 139 115 85 197 185 170 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1I1GU-1226-SM-A9SKT.Esophagus_Gastroesophageal_Junction.RNAseq.bw\ color 139,115,85\ longLabel Esophagus Gastroesophageal Junction\ parent gtexCov\ shortLabel Esoph Gastroes Junc\ track gtexCovEsophagusGastroesophagealJunction\ wgEncodeReg4DnaseAllEsophagus Esophagus (all biosamples) bigWig Avg. DNase level of 2 esophagus experiments (all biosamples) 0 28 159 131 100 207 193 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/esophagusDNase.bw\ color 159,131,100\ longLabel Avg. DNase level of 2 esophagus experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 28\ shortLabel Esophagus (all biosamples)\ track wgEncodeReg4DnaseAllEsophagus\ type bigWig\ heartFibroMerged Heart Fibroblasts Merged bigWig Methylation Atlas: Heart Fibroblasts Merged Samples 2 28 178 34 34 216 144 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartFibroMerged.bw\ color 178,34,34\ longLabel Methylation Atlas: Heart Fibroblasts Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 28\ shortLabel Heart Fibroblasts Merged\ subGroups cellType=Heart-Fibro dataType=Merged\ track heartFibroMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ netHprcGCA_018852595v1 HG02145.pat netAlign GCA_018852595.1 chainHprcGCA_018852595v1 HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chain Nets 1 28 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02145.pat HG02145.alt.pat.f1_v2 (Jun. 2021 GCA_018852595.1_HG02145.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018852595.1\ parent hprcChainNetViewnet off\ priority 30\ shortLabel HG02145.pat\ subGroups view=net sample=s030 population=afr subpop=acb hap=pat\ track netHprcGCA_018852595v1\ type netAlign GCA_018852595.1 chainHprcGCA_018852595v1\ wgEncodeRegDnaseUwHpfPeak HPF Pk narrowPeak HPF pulmonary fibroblast DNaseI Peaks from ENCODE 1 28 255 247 85 255 251 170 1 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HPF Pk\ subGroups view=a_Peaks cellType=HPF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwHpfPeak\ wgEncodeRegDnaseUwHpfWig HPF Sg bigWig 0 11172 HPF pulmonary fibroblast DNaseI Signal from ENCODE 0 28 255 247 85 255 251 170 0 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.21201\ shortLabel HPF Sg\ subGroups cellType=HPF treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwHpfSignal\ track wgEncodeRegDnaseUwHpfWig\ type bigWig 0 11172\ wgEncodeReg4TxnKidneyMinus Kidney - bigWig Avg. - strand total RNA-seq level of 8 kidney experiments (tissues and primary cells only) 0 28 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpKidneyMinus.bw\ color 92,161,153\ longLabel Avg. - strand total RNA-seq level of 8 kidney experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn\ priority 28\ shortLabel Kidney -\ track wgEncodeReg4TxnKidneyMinus\ type bigWig\ wgEncodeReg4AtacAllLargeIntestine Large intestine (all biosamples) bigWig Avg. ATAC level of 29 large intestine experiments (all biosamples) 0 28 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/largeIntestineATAC.bw\ color 86,86,36\ longLabel Avg. ATAC level of 29 large intestine experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 28\ shortLabel Large intestine (all biosamples)\ track wgEncodeReg4AtacAllLargeIntestine\ type bigWig\ npm Singapore NPM 9.7k WGS vcfTabix SNV Frequencies: NPM Singapore - 9,770 WGS samples 0 28 0 0 0 127 127 127 0 0 0
Description
\\ The National Precision Medicine (NPM) program\ in Singapore sequenced 9,770 whole genomes, mostly of Chinese, Indian and Malay ancestry.\ A minimum allele count cutoff of >5 was applied. CNV data is also available.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ VCF download can be requested on the Chorus Browser website, which requires an\ account and data access request.\
\ \Methods
\\ Whole Genome Sequencing (WGS) data processing followed GATK4 best practices. The GATK4 germline\ variant analysis workflow written in WDL was adapted to Nextflow and deployed at the National\ Supercomputing Centre, Singapore (NSCC). WGS reads were aligned against GRCh38 with the BWA-MEM\ algorithm and used as input to GATK HaplotypeCaller to produce single sample gVCFs. The gVCF files\ were joint-called then loaded in Hail. Low-quality WGS libraries and low-quality variants were\ removed. QC-ed variants were functionally annotated with Ensembl Variant Effect Predictor (VEP)\ (version 95). For variants that affect protein-coding regions, the annotations also include\ information on potential changes to the cognate protein's 3D structure and drug binding ability.\
\\ Our data access request was approved by the NPM data access committee. It can be contacted at contact_npco@a-star.edu.sg.\ We downloaded the data from the NPM Chorus browser download section.\ The makeDoc file of the track documents how all source files of the varFreqs track were converted.\ For some tracks, python scripts were necessary and are also available from GitHub.\
\ \Credits
\\ Thanks to the NPM Data Access Committee and Eleanor for granting our data request.\ By browsing the data, you agree to use the data only for academic, non-commercial\ research to improve human health (biology/disease). We request all data users\ agree to protect the confidentiality of the data subjects in any research papers or publications\ that they may prepare, by taking all reasonable care to limit the possibility\ of identification. In particular, the data users shall not use, or attempt\ to use, the data to deliberately compromise or otherwise infringe the\ confidentiality of information on data subjects and their right to privacy.\ If you use any of the data obtained from the CHORUS variant browser, we request\ that you cite the NPM flagship paper (Wong et al, 2023). All data users of the\ data must take note that the data provider and relevant SG10K_Health cohort\ owners bear no responsibility for the further analysis or interpretation of the data.\
\ \References
\\ Wong E, Bertin N, Hebrard M, Tirado-Magallanes R, Bellis C, Lim WK, Chua CY, Tong PML, Chua R, Mak K\ et al.\ \ The Singapore National Precision Medicine Strategy.\ Nat Genet. 2023 Feb;55(2):178-186.\ PMID: 36658435\
\ varRep 1 bigDataUrl /gbdb/hg38/varFreqs/_npm/SG10K_Health_r5.3.2.sites.vcf.bgz\ dataVersion r5.3.2\ longLabel SNV Frequencies: NPM Singapore - 9,770 WGS samples\ parent varFreqs on\ priority 28\ shortLabel Singapore NPM 9.7k WGS\ tableBrowser off\ track npm\ type vcfTabix\ visibility hide\ wgEncodeReg4MarkH3k4me3AllSmallIntestine Small intestine (all biosamples) bigWig Avg. H3K4me3 level of 11 small intestine experiments (all biosamples) 0 28 98 98 41 176 176 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/smallIntestineH3K4me3.bw\ color 98,98,41\ longLabel Avg. H3K4me3 level of 11 small intestine experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 28\ shortLabel Small intestine (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllSmallIntestine\ type bigWig\ wgEncodeReg4MarkH3k27acAllSpleen Spleen (all biosamples) bigWig Avg. H3K27ac level of 11 spleen experiments (all biosamples) 2 28 136 157 97 195 206 176 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spleenH3K27ac.bw\ color 136,157,97\ longLabel Avg. H3K27ac level of 11 spleen experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 28\ shortLabel Spleen (all biosamples)\ track wgEncodeReg4MarkH3k27acAllSpleen\ type bigWig\ STAD STAD bigLolly 12 + Stomach adenocarcinoma 0 28 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/STAD.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Stomach adenocarcinoma\ parent gdcCancer off\ priority 28\ shortLabel STAD\ track STAD\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4MarkCtcfAllTestis Testis (all biosamples) bigWig Avg. CTCF level of 2 testis experiments (all biosamples) 0 28 139 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/testisCTCF.bw\ color 139,140,140\ longLabel Avg. CTCF level of 2 testis experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 28\ shortLabel Testis (all biosamples)\ track wgEncodeReg4MarkCtcfAllTestis\ type bigWig\ Twist_Exome_Target Twist Core T bigBed Twist - Bioscience - Core Exome Panel Target Regions 1 28 254 97 0 254 176 127 0 0 0 map 1 bigDataUrl /gbdb/hg38/exomeProbesets/Twist_Exome_Target_hg38.bb\ color 254,97,0\ longLabel Twist - Bioscience - Core Exome Panel Target Regions\ parent exomeProbesets off\ shortLabel Twist Core T\ track Twist_Exome_Target\ type bigBed\ visibility dense\ chainManPen1 Chinese pangolin Chain chain manPen1 Chinese pangolin (Aug 2014 (M_pentadactyla-1.1.1/manPen1)) Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Chinese pangolin (Aug 2014 (M_pentadactyla-1.1.1/manPen1)) Chained Alignments\ otherDb manPen1\ parent placentalChainNetViewchain off\ shortLabel Chinese pangolin Chain\ subGroups view=chain species=s092 clade=c04\ track chainManPen1\ type chain manPen1\ chainMicMur2 Mouse lemur Chain chain micMur2 Mouse lemur (May 2015 (Mouse lemur/micMur2)) Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 compGeno 1 longLabel Mouse lemur (May 2015 (Mouse lemur/micMur2)) Chained Alignments\ otherDb micMur2\ parent primateChainNetViewchain off\ shortLabel Mouse lemur Chain\ subGroups view=chain species=s043 clade=c03\ track chainMicMur2\ type chain micMur2\ encTfChipPkENCFF714KXI A549 NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF714KXI) 0 29 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in A549 from ENCODE 3 (ENCFF714KXI)\ parent encTfChipPk off\ shortLabel A549 NR3C1 1\ subGroups cellType=A549 factor=NR3C1\ track encTfChipPkENCFF714KXI\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_fwd AorticSmsToFgf2_02hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward 0 29 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_fwd AorticSmsToFgf2_02hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward 1 29 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2002hr%2c%20biol_rep2%20%28LK17%29.CNhs13363.12745-135I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 02hr, biol_rep2 (LK17)_CNhs13363_12745-135I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12745-135I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF202hrBiolRep2LK17_CNhs13363_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12745-135I9\ urlLabel FANTOM5 Details:\ ENCFF013AMD_ENCFF563YFA_ENCFF336MIJ_ENCFF302UYV ENCFF013AMD_ENCFF563YFA_ENCFF336MIJ_ENCFF302UYV bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (1) cCREs 4 29 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF013AMD_ENCFF563YFA_ENCFF336MIJ_ENCFF302UYV.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 71\ shortLabel ENCFF013AMD_ENCFF563YFA_ENCFF336MIJ_ENCFF302UYV\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__88_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO070VNS dataType=typeCcres\ track ENCFF013AMD_ENCFF563YFA_ENCFF336MIJ_ENCFF302UYV\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF545THT ENCSR000AAO + strand bigWig Fibroblast of lung female adult (83 years) and male adult (23 years) + strand total RNA-seq signal 2 29 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/da53711d-db68-4e1c-90ea-0e9f8061ac9a/ENCFF545THT.bigWig\ color 130,163,45\ longLabel Fibroblast of lung female adult (83 years) and male adult (23 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAO + strand\ track wgEncodeReg4RnaSeq_ENCFF545THT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF883BDY ENCSR000AMW Signal bigWig Fibroblast of lung female child 11 years and male adult 45 years H3K4me3 signal 2 29 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/059b69ef-bf7a-4775-970b-536a08d9f71f/ENCFF883BDY.bigWig\ color 255,0,0\ longLabel Fibroblast of lung female child 11 years and male adult 45 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AMW Signal\ track wgEncodeReg4Epigenetics_ENCFF883BDY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF491ZJZ ENCSR000APF Peak bigBed 5 Osteoblast CTCF peaks 4 29 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b2461506-83a9-46bc-89aa-25f0c78faeaa/ENCFF491ZJZ.bigBed\ labelFields none\ longLabel Osteoblast CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000APF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF491ZJZ\ type bigBed 5\ useScore 1\ visibility squish\ gtexCovEsophagusMucosa Esoph Mucosa bigWig Esophagus Mucosa 0 29 139 115 85 197 185 170 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-11NSD-1126-SM-5N9BQ.Esophagus_Mucosa.RNAseq.bw\ color 139,115,85\ longLabel Esophagus Mucosa\ parent gtexCov\ shortLabel Esoph Mucosa\ track gtexCovEsophagusMucosa\ wgEncodeReg4DnaseAllGallbladder Gallbladder (all biosamples) bigWig DNase level of 1 gallbladder experiment (all biosamples) 0 29 103 78 167 179 166 211 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/gallbladderDNase.bw\ color 103,78,167\ longLabel DNase level of 1 gallbladder experiment (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 29\ shortLabel Gallbladder (all biosamples)\ track wgEncodeReg4DnaseAllGallbladder\ type bigWig\ wgEncodeRegDnaseUwHconfPeak HConF Pk narrowPeak HConF conjunctival fibroblast DNaseI Peaks from ENCODE 1 29 255 252 85 255 253 170 1 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HConF Pk\ subGroups view=a_Peaks cellType=HConF treatment=n_a tissue=eye cancer=unknown\ track wgEncodeRegDnaseUwHconfPeak\ wgEncodeRegDnaseUwHconfWig HConF Sg bigWig 0 8320.98 HConF conjunctival fibroblast DNaseI Signal from ENCODE 0 29 255 252 85 255 253 170 0 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.2193\ shortLabel HConF Sg\ subGroups cellType=HConF treatment=n_a tissue=eye cancer=unknown\ table wgEncodeRegDnaseUwHconfSignal\ track wgEncodeRegDnaseUwHconfWig\ type bigWig 0 8320.98\ heartFibro41V Heart - Fibroblasts - Z0000041V bigWig Methylation Atlas: Heart - Fibroblasts - Z0000041V 2 29 178 34 34 216 144 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartFibro41V.bw\ color 178,34,34\ longLabel Methylation Atlas: Heart - Fibroblasts - Z0000041V\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 29\ shortLabel Heart - Fibroblasts - Z0000041V\ subGroups cellType=Heart-Fibro dataType=Replicate\ track heartFibro41V\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnLargeIntestinePlus Large intestine + bigWig Avg. + strand total RNA-seq level of 15 large intestine experiments (tissues and primary cells only) 0 29 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLargeIntestinePlus.bw\ color 86,86,36\ longLabel Avg. + strand total RNA-seq level of 15 large intestine experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 29\ shortLabel Large intestine +\ track wgEncodeReg4TxnLargeIntestinePlus\ type bigWig\ wgEncodeReg4AtacAllLiver Liver (all biosamples) bigWig Avg. ATAC level of 8 liver experiments (all biosamples) 0 29 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/liverATAC.bw\ color 137,152,82\ longLabel Avg. ATAC level of 8 liver experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 29\ shortLabel Liver (all biosamples)\ track wgEncodeReg4AtacAllLiver\ type bigWig\ chainHprcGCA_018504635v1 NA20129.mat chain GCA_018504635.1 NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 29 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504635.1\ parent hprcChainNetViewchain off\ priority 42\ shortLabel NA20129.mat\ subGroups view=chain sample=s042 population=afr subpop=asw hap=mat\ track chainHprcGCA_018504635v1\ type chain GCA_018504635.1\ wgEncodeReg4MarkH3k4me3AllSpinalCord Spinal cord (all biosamples) bigWig Avg. H3K4me3 level of 2 spinal cord experiments (all biosamples) 0 29 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spinalCordH3K4me3.bw\ color 130,141,158\ longLabel Avg. H3K4me3 level of 2 spinal cord experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 29\ shortLabel Spinal cord (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllSpinalCord\ type bigWig\ wgEncodeReg4MarkH3k27acAllStomach Stomach (all biosamples) bigWig Avg. H3K27ac level of 8 stomach experiments (all biosamples) 2 29 145 144 99 200 199 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/stomachH3K27ac.bw\ color 145,144,99\ longLabel Avg. H3K27ac level of 8 stomach experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 29\ shortLabel Stomach (all biosamples)\ track wgEncodeReg4MarkH3k27acAllStomach\ type bigWig\ svatalogSnv SVatalog 101 WGS vcfTabix SNV Frequencies: GWAS SVatalog - 101 samples, 10X Genomics linked-read SNPs 0 29 0 0 0 127 127 127 0 0 0
Description
\\ This track shows small-variant (single-nucleotide variant and short-indel)\ allele frequencies from 101 samples released as part of the\ GWAS\ SVatalog tool (Chirmade et al. 2026). The same 101-sample cohort\ underlies the structural-variant sibling track\ SVatalog 101 SVs in the Long-read\ SV collection; this track provides the companion small-variant allele\ frequencies that SVatalog uses to compute linkage disequilibrium between\ SNPs and SVs.\
\\ The callset contains about 8.8 million sites across the autosomes\ and chromosome X. Each site reports the alternate allele frequency in the\ 101 samples, the gnomAD v3.1 non-Finnish European allele frequency (when\ annotated in the source release), and a dbSNP rsID when one was available.\
\ \Display Conventions and Configuration
\\ The track uses the standard VCF display. Variants appear as colored marks\ along the genome; clicking an item opens the detail page with per-site\ INFO fields: AF, AC, AN, the gnomAD v3.1 NFE allele frequency\ (GNOMAD_NFE_AF) and the dbSNP rsID (RSID).\
\\ Note on AC/AN: the source allele-frequency release only ships AF. For this\ track we synthesize AC and AN by assuming the full 2x101 = 202-allele\ denominator (AN=202, AC=round(AF x 202)), so the values are approximate\ at sites where some samples had missing genotypes.\
\ \Methods
\\ Small variants were called from 10X Genomics linked-read (paired-end\ short-read) whole-genome sequencing of the 101 SVatalog samples with\ GATK\ HaplotypeCaller v4.0.0.0 using default parameters. Calls were phased\ across the cohort with\ SHAPEIT\ v4.2.0, and per-site alternate allele frequencies were computed on\ the resulting joint callset. Structural variants, released as a separate\ lrSv subtrack, were called from long-read data and merged with these\ SNPs for the LD analyses reported by GWAS SVatalog.\
\\ For display here, the per-chromosome allele-frequency text files\ (chr{1..22,X}_allele_freq.txt) were converted to a single\ sites-only VCF with approximate AC/AN fields and bgzipped / tabix\ indexed. The step-by-step build commands are recorded in the UCSC\ makeDoc\ \ doc/hg38/varFreqs.txt; the converter script lives in\ \ makeDb/scripts/varFreqs.\
\ \Data Access
\\ The VCF file for this track is available from\ our\ download server as svatalog.vcf.gz (with .tbi index).\ Regions can be extracted with tabix:\ tabix http://hgdownload.soe.ucsc.edu/gbdb/hg38/varFreqs/svatalog/svatalog.vcf.gz chr21:1-100000000.\
\\ The original per-chromosome allele-frequency tables and the accompanying\ LD statistics used by the SVatalog tool are available from the\ companion Zenodo deposit:\ zenodo.org/records/13367574.\ The SVatalog web tool itself is at\ svatalog.research.sickkids.ca.\
\ \Credits
\\ Thanks to Chirmade, Strug and colleagues at The Hospital for Sick\ Children and the University of Toronto for releasing this annotated\ SNP frequency callset alongside the GWAS SVatalog tool.\
\ \References
\ \ \\
Chirmade S, Wang Z, Mastromatteo S, Sanders E, Thiruvahindrapuram B, Nalpathamkalam T, Pellecchia G,\
Lin F, Keenan K, Patel RV et al.\
\
GWAS SVatalog: a visualization tool to aid fine-mapping of GWAS loci with structural variations.\
Heredity (Edinb). 2026 Mar;135(3):199-210.\
PMID: 41203876; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 77\ shortLabel ENCFF987RXP_ENCFF419XND_ENCFF224LYA_ENCFF081IRZ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__81_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO077CCP dataType=typeCcres\ track ENCFF987RXP_ENCFF419XND_ENCFF224LYA_ENCFF081IRZ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF400FIM ENCSR000AAO - strand bigWig Fibroblast of lung female adult (83 years) and male adult (23 years) - strand total RNA-seq signal 2 30 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/7a68e41c-e940-49cf-8a0a-9b5b0fc7affe/ENCFF400FIM.bigWig\ color 130,163,45\ longLabel Fibroblast of lung female adult (83 years) and male adult (23 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAO - strand\ track wgEncodeReg4RnaSeq_ENCFF400FIM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF813BQI ENCSR000ANE Peak bigBed 5 Skeletal muscle myoblast male adult 22 years CTCF peak 4 30 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/66e5694c-317b-409d-909a-339e3b823a8c/ENCFF813BQI.bigBed\ color 0,176,240\ labelFields none\ longLabel Skeletal muscle myoblast male adult 22 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANE Peak\ track wgEncodeReg4Epigenetics_ENCFF813BQI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF185GGC ENCSR000APF Signal bigWig Osteoblast CTCF ENCSR000APF signal 2 30 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b25647d8-d4f3-4832-bca8-c325c917e910/ENCFF185GGC.bigWig\ color 138,135,169\ longLabel Osteoblast CTCF ENCSR000APF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000APF Signal\ track wgEncodeReg4TfChip_ENCFF185GGC\ type bigWig\ visibility full\ gtexCovEsophagusMuscularis Esoph Muscularis bigWig Esophagus Muscularis 0 30 205 170 125 230 212 190 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1C475-0726-SM-73KVL.Esophagus_Muscularis.RNAseq.bw\ color 205,170,125\ longLabel Esophagus Muscularis\ parent gtexCov\ shortLabel Esoph Muscularis\ track gtexCovEsophagusMuscularis\ wgEncodeRegDnaseUwHacPeak HAc Pk narrowPeak HAc cerebellar astrocyte DNaseI Peaks from ENCODE 1 30 250 255 85 252 255 170 1 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HAc Pk\ subGroups view=a_Peaks cellType=HAc treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHacPeak\ wgEncodeRegDnaseUwHacWig HAc Sg bigWig 0 10000.7 HAc cerebellar astrocyte DNaseI Signal from ENCODE 0 30 250 255 85 252 255 170 0 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.22962\ shortLabel HAc Sg\ subGroups cellType=HAc treatment=n_a tissue=brain cancer=normal\ table wgEncodeRegDnaseUwHacSignal\ track wgEncodeRegDnaseUwHacWig\ type bigWig 0 10000.7\ heartFibro41W Heart - Fibroblasts - Z0000041W bigWig Methylation Atlas: Heart - Fibroblasts - Z0000041W 2 30 178 34 34 216 144 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartFibro41W.bw\ color 178,34,34\ longLabel Methylation Atlas: Heart - Fibroblasts - Z0000041W\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 30\ shortLabel Heart - Fibroblasts - Z0000041W\ subGroups cellType=Heart-Fibro dataType=Replicate\ track heartFibro41W\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnLargeIntestineMinus Large intestine - bigWig Avg. - strand total RNA-seq level of 15 large intestine experiments (tissues and primary cells only) 0 30 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLargeIntestineMinus.bw\ color 86,86,36\ longLabel Avg. - strand total RNA-seq level of 15 large intestine experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 30\ shortLabel Large intestine -\ track wgEncodeReg4TxnLargeIntestineMinus\ type bigWig\ wgEncodeReg4DnaseAllLimb Limb (all biosamples) bigWig Avg. DNase level of 6 limb experiments (all biosamples) 0 30 95 88 237 175 171 246 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/limbDNase.bw\ color 95,88,237\ longLabel Avg. DNase level of 6 limb experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 30\ shortLabel Limb (all biosamples)\ track wgEncodeReg4DnaseAllLimb\ type bigWig\ wgEncodeReg4AtacAllLung Lung (all biosamples) bigWig Avg. ATAC level of 8 lung experiments (all biosamples) 0 30 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/lungATAC.bw\ color 130,163,45\ longLabel Avg. ATAC level of 8 lung experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 30\ shortLabel Lung (all biosamples)\ track wgEncodeReg4AtacAllLung\ type bigWig\ netHprcGCA_018504635v1 NA20129.mat netAlign GCA_018504635.1 chainHprcGCA_018504635v1 NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chain Nets 1 30 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA20129.mat NA20129.pri.mat.f1_v2 (May 2021 GCA_018504635.1_NA20129.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504635.1\ parent hprcChainNetViewnet off\ priority 42\ shortLabel NA20129.mat\ subGroups view=net sample=s042 population=afr subpop=asw hap=mat\ track netHprcGCA_018504635v1\ type netAlign GCA_018504635.1 chainHprcGCA_018504635v1\ wgEncodeReg4MarkH3k4me3AllSpleen Spleen (all biosamples) bigWig Avg. H3K4me3 level of 10 spleen experiments (all biosamples) 0 30 136 157 97 195 206 176 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spleenH3K4me3.bw\ color 136,157,97\ longLabel Avg. H3K4me3 level of 10 spleen experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 30\ shortLabel Spleen (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllSpleen\ type bigWig\ swefreq Sweden SweGen 1k WGS vcfTabix SNV Frequencies: Sweden SweGen - 1k WGS 0 30 0 0 0 127 127 127 0 0 0
Description
\\ SweGen provides\ whole-genome sequencing variant frequencies for 1,000 Swedish individuals.\ The 1,000 individuals represent a cross-section of the Swedish population and no disease\ information was used for the selection. The frequency data may therefore include genetic variants\ that are associated with, or causative of, disease. SweGen also provides SV calls, TEs, MELT\ results for TEs, HLAs and a FASTA file with new sequence not in hg38. There is\ also a version for the T2T CHM13 assembly. The full dataset can be browsed at\ the\ SweGen Browser.\
\\ The mobile element insertions called by MELT on the same 1,000 SweGen\ samples are loaded as a separate track,\ SweGen 1000 MEIs, in the\ Mobile Element Insertions collection.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ VCF files can be requested at\ SweGen via a form. The request\ needs manual approval, which is usually quick. If there is no reply, email SweGen directly.\
\ \Methods
\\ Fragment size 350bp on a Covaris E220. Paired-end sequencing with 150bp read length was performed\ on Illumina HiSeq X (HiSeq Control Software 3.3.39/RTA 2.7.1) with v2.5 sequencing chemistry.\ Raw whole-genome reads were aligned to the GRCh37 reference using BWA-MEM v0.7.12, then sorted and\ indexed with samtools v0.1.19 and assessed with qualimap v2.2.20; per-sample alignments from\ multiple lanes and flow cells were merged using Picard MergeSamFiles v1.120. Processing followed\ GATK best practices with GATK v3.3, including indel realignment (RealignerTargetCreator,\ IndelRealigner), duplicate marking (Picard MarkDuplicates v1.120), and base quality score\ recalibration (BaseRecalibrator), producing one finalized BAM per sample. Per-sample gVCFs were\ generated with GATK HaplotypeCaller v3.3 using reference files from the GATK v2.8 resource bundle,\ with all steps coordinated via Piper v1.4.0. Joint genotyping of 1,000 samples was performed by\ merging gVCFs in five batches of 200 using GATK CombineGVCFs, followed by cohort genotyping with\ GATK GenotypeGVCFs and variant quality score recalibration for SNVs and indels using\ VariantRecalibrator and ApplyRecalibration.\
\\ At UCSC, the hg38 VCF was downloaded from\ SweFreq and loaded as-is.\ The file that we use is swegen_frequencies_fixploidy_GRCh38_20190204.vcf.gz.\ The conversion steps for all source files of the varFreqs track are documented in the track's makeDoc file.\ For some tracks, python scripts were needed; these are also available from GitHub.\
\ \Credits
\\ The SweGen allele frequency data was generated by Science for Life Laboratory. \ Any redistributed data derived from the SweGen data set must follow the SweGen terms and conditions.\ The data may not be used to attempt to identify any individual in this or other studies.\ Thanks to the SweGen patients and SciLifeLab for making the data available.\
\ \References
\\
Ameur A, Dahlberg J, Olason P, Vezzi F, Karlsson R, Martin M, Viklund J, Kähäri AK,\
Lundin P, Che H et al.\
\
SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish\
population.\
Eur J Hum Genet. 2017 Nov;25(11):1253-1260.\
PMID: 28832569; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 69\ shortLabel ENCFF521HEY_ENCFF862YHY_ENCFF194KAZ_ENCFF263VJQ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__85_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO080EZF dataType=typeCcres\ track ENCFF521HEY_ENCFF862YHY_ENCFF194KAZ_ENCFF263VJQ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF618FQK ENCSR000AAP + strand bigWig Lung microvascular endothelial cell female adult (55 years) and male adult (63 years) + strand total RNA-seq signal 2 31 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4c4ecfc4-12a8-4c90-bd05-8e789d656ca1/ENCFF618FQK.bigWig\ color 255,37,41\ longLabel Lung microvascular endothelial cell female adult (55 years) and male adult (63 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAP + strand\ track wgEncodeReg4RnaSeq_ENCFF618FQK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF755CPB ENCSR000ANE Signal bigWig Skeletal muscle myoblast male adult 22 years CTCF signal 2 31 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0d271d27-5959-43c9-b88d-cdf683c52609/ENCFF755CPB.bigWig\ color 0,176,240\ longLabel Skeletal muscle myoblast male adult 22 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANE Signal\ track wgEncodeReg4Epigenetics_ENCFF755CPB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF986DNJ ENCSR000APM Peak bigBed 5 Fibroblast of dermis CTCF peaks 4 31 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a509aa3f-7ebc-4332-9481-a24ae01520c8/ENCFF986DNJ.bigBed\ labelFields none\ longLabel Fibroblast of dermis CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000APM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF986DNJ\ type bigBed 5\ useScore 1\ visibility squish\ gtexCovFallopianTube Fallopian Tube bigWig Fallopian Tube 0 31 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-OHPK-2326-SM-3MJH2.Fallopian_Tube.RNAseq.bw\ color 238,213,210\ longLabel Fallopian Tube\ parent gtexCov\ shortLabel Fallopian Tube\ track gtexCovFallopianTube\ heartFibro41X Heart - Fibroblasts - Z0000041X bigWig Methylation Atlas: Heart - Fibroblasts - Z0000041X 2 31 178 34 34 216 144 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartFibro41X.bw\ color 178,34,34\ longLabel Methylation Atlas: Heart - Fibroblasts - Z0000041X\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 31\ shortLabel Heart - Fibroblasts - Z0000041X\ subGroups cellType=Heart-Fibro dataType=Replicate\ track heartFibro41X\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwHvmfPeak HVMF Pk narrowPeak HVMF villous mesenchymal fibroblast DNaseI Peaks from ENCODE 1 31 242 255 85 248 255 170 1 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HVMF Pk\ subGroups view=a_Peaks cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ track wgEncodeRegDnaseUwHvmfPeak\ wgEncodeRegDnaseUwHvmfWig HVMF Sg bigWig 0 5956.46 HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE 0 31 242 255 85 248 255 170 0 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.24127\ shortLabel HVMF Sg\ subGroups cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ table wgEncodeRegDnaseUwHvmfSignal\ track wgEncodeRegDnaseUwHvmfWig\ type bigWig 0 5956.46\ wgEncodeReg4TxnLiverPlus Liver + bigWig Avg. + strand total RNA-seq level of 9 liver experiments (tissues and primary cells only) 0 31 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLiverPlus.bw\ color 137,152,82\ longLabel Avg. + strand total RNA-seq level of 9 liver experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn\ priority 31\ shortLabel Liver +\ track wgEncodeReg4TxnLiverPlus\ type bigWig\ chainHprcGCA_018504625v1 NA20129.pat chain GCA_018504625.1 NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 31 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504625.1\ parent hprcChainNetViewchain off\ priority 41\ shortLabel NA20129.pat\ subGroups view=chain sample=s041 population=afr subpop=asw hap=pat\ track chainHprcGCA_018504625v1\ type chain GCA_018504625.1\ wgEncodeReg4DnaseAllNerve Nerve (all biosamples) bigWig Avg. DNase level of 4 nerve experiments (all biosamples) 0 31 160 156 0 207 205 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/nerveDNase.bw\ color 160,156,0\ longLabel Avg. DNase level of 4 nerve experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 31\ shortLabel Nerve (all biosamples)\ track wgEncodeReg4DnaseAllNerve\ type bigWig\ wgEncodeReg4AtacAllPancreas Pancreas (all biosamples) bigWig Avg. ATAC level of 10 pancreas experiments (all biosamples) 0 31 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/pancreasATAC.bw\ color 175,100,41\ longLabel Avg. ATAC level of 10 pancreas experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 31\ shortLabel Pancreas (all biosamples)\ track wgEncodeReg4AtacAllPancreas\ type bigWig\ wgEncodeReg4MarkH3k4me3AllStomach Stomach (all biosamples) bigWig Avg. H3K4me3 level of 7 stomach experiments (all biosamples) 0 31 145 144 99 200 199 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/stomachH3K4me3.bw\ color 145,144,99\ longLabel Avg. H3K4me3 level of 7 stomach experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 31\ shortLabel Stomach (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllStomach\ type bigWig\ tpmi Taiwan TPMI Axiom array vcfTabix SNV Frequencies: Taiwan Precision Medicine Initiative - Axiom TPM1 chip, Han Chinese 0 31 0 0 0 127 127 127 0 0 0
Description
\\ This track shows allele frequencies for 672,843 variants from the\ Taiwan\ Precision Medicine Initiative (TPMI), a large cohort of people of\ Han Chinese ancestry recruited in Taiwan. The frequencies come from the\ publicly released annotation of the Axiom TPM1 SNP array, the\ population-optimized chip that TPMI used to genotype 165,596 of its\ participants. Variants are positioned on hg38 (GRCh38). About 80% of\ the sites are biallelic SNVs; the remainder are short insertions or\ deletions and a small number of multi-nucleotide variants.\
\ \\ TPMI is one of the largest non-European cohorts in genetic research,\ with 565,390 enrolled participants as of the v37 data freeze. Han\ Chinese people are nearly 20% of the world's population but are\ under-represented in genetic studies. A cohort of this size is useful\ for population-specific allele frequency reference, GWAS replication,\ and clinical variant interpretation in East Asian populations.\
\ \Display
\\ The track uses the standard UCSC VCF display. Hovering a variant shows\ the cohort allele frequency (AF), the derived allele count\ (AC), the assumed total allele number (AN), the TPMI\ NGS concordance score from the chip annotation, and the Affymetrix\ probe set ID.\
\ \Methods
\\ TPMI participants were recruited from 16 partner medical centres (33\ affiliated hospitals) across Taiwan, who together serve about 40% of the\ Taiwanese population. Each participant donated a blood sample and\ consented to access of their electronic medical records. Genomic DNA\ was extracted with the QIAsymphony DSP DNA Mini Kit and genotyped on\ two custom Axiom arrays (TPMv1 and TPMv2; Thermo Fisher Scientific)\ designed to optimally tag Han Chinese variation. Genotype calling was\ done with Applied Biosystems Array Power Tools using the Best Practices\ Workflow at the National Center for Genome Medicine, Academia Sinica.\ After QC, the TPMv1 array had been used on 165,596 participants and\ TPMv2 on 321,360 (486,956 with both genotype and EMR). The cohort has\ broad coverage of Han Chinese subgroups as well as Indigenous Taiwanese\ populations. See the TPMI Nature paper (in References) for sample\ recruitment, calling, imputation and quality control details.\
\\ The source data for this track is the Axiom TPM1 chip annotation file\ TPM1_Array_Annotation.csv distributed by Thermo Fisher\ Scientific (create date 2022-06-01), which embeds the TPMI cohort allele\ frequency in a column named Allele Frequency alongside the\ probe-design metadata. The chip annotation declares hg38 coordinates,\ so no liftover was needed. We converted the CSV to VCF with the script\ tpmiToVcf.py:\ rows on alt or random contigs were dropped, rows flagged as TPMI\ blacklist or with no reported allele frequency were dropped, and indels\ encoded with - for the empty allele were rewritten in\ VCF-compatible form by prepending an anchor base read from the hg38\ reference with twoBitToFa. The resulting VCF was sorted and\ indexed with bcftools sort and tabix. The full\ recipe is in the\ makeDoc\ file.\
\\ The source publishes only allele frequencies, not allele counts. To\ make the track usable in count-based aggregate views, we derived\ AC = round(AF * AN) with AN = 100,000. This AN value\ was chosen because every reported AF in the file is an exact integer\ multiple of 1/100,000, so the source data was rounded to that\ precision. The TPMv1 chip was used on 165,596 participants (~330,000\ chromosomes for autosomes), so the true AN may be roughly three times\ larger; the AC values published here are therefore proportional to the\ true counts but not equal to them. The assumption is documented in the\ VCF header.\
\ \Caveats
\\ Of 752,921 rows in the source CSV, 672,843 were emitted to the VCF.\ The skipped rows are: 80,034 rows with no reported allele frequency\ (the chip carries probe annotations for some sites that the TPMI cohort\ did not type or quality-filter, including the entire chrY content of\ the chip); 36 rows on alt or random contigs; 8 rows with no defined\ reference allele in the source. About 61,000 rows are also flagged as\ TPMI blacklist; none of those have a published allele frequency, so\ they are filtered out by the no-AF rule.\
\\ The TPM2 chip annotation (~755,000 SNPs) is not represented in this\ track because its public annotation does not embed a TPMI cohort allele\ frequency column. It only carries the 1000 Genomes / HapMap CEU/CHB/JPT/YRI\ frequencies that ship with all Affymetrix Axiom chips, which are already\ available through dbSNP. About 234,255 SNPs are shared between TPM1 and\ TPM2, so the TPM1-only track still covers most of the cohort-typed\ content.\
\\ The TPMI authors note that allele frequencies on the TPMv1 chip are\ reliable for variants with MAF above about 0.1%; rarer sites are\ reported but should be interpreted cautiously because SNP arrays have\ higher genotyping error at low MAF.\
\ \Data Access
\\ Due to license restrictions, the data for this track cannot be downloaded from the UCSC\ Genome Browser. The Table Browser, Data Integrator, and download server are not available\ for this track.\
\\ The original Axiom TPM1 chip annotation CSV is distributed by Thermo Fisher Scientific;\ search their support site for "Axiom TPM1 Annotation" to download the matching version\ (we used the 2022-06-01 release).\
\ \Credits
\\ Thanks to the TPMI participants and to the Academia Sinica and Thermo\ Fisher Scientific teams that designed and curated the Axiom TPMv1 SNP\ array and published the chip annotation file.\
\ \References
\\
Yang HC, Kwok PY, Li LH, Liu YM, Jong YJ, Lee KY, Wang DW, Tsai MF, Yang JH, Chen CH et al.\
\
The Taiwan Precision Medicine Initiative provides a cohort for large-scale studies.\
Nature. 2025 Dec;648(8092):117-127.\
PMID: 41092961; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 68\ shortLabel ENCFF541ZVM_ENCFF889QTE_ENCFF480FCW_ENCFF796CNP\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__81_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO097MEH dataType=typeCcres\ track ENCFF541ZVM_ENCFF889QTE_ENCFF480FCW_ENCFF796CNP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF912QIW ENCSR000AAP - strand bigWig Lung microvascular endothelial cell female adult (55 years) and male adult (63 years) - strand total RNA-seq signal 2 32 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0d0e44a1-d4d8-46fb-a6a1-87400513e401/ENCFF912QIW.bigWig\ color 255,37,41\ longLabel Lung microvascular endothelial cell female adult (55 years) and male adult (63 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAP - strand\ track wgEncodeReg4RnaSeq_ENCFF912QIW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF963BYY ENCSR000ANF Peak bigBed 5 Skeletal muscle myoblast male adult 22 years H3K27ac peak 4 32 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/cafcd0b9-a172-4774-879f-e953d80dbe48/ENCFF963BYY.bigBed\ color 181,145,0\ longLabel Skeletal muscle myoblast male adult 22 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANF Peak\ track wgEncodeReg4Epigenetics_ENCFF963BYY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF720GFK ENCSR000APM Signal bigWig Fibroblast of dermis CTCF ENCSR000APM signal 2 32 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6e69edda-743b-4f3a-a802-f318373f7944/ENCFF720GFK.bigWig\ color 127,133,209\ longLabel Fibroblast of dermis CTCF ENCSR000APM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000APM Signal\ track wgEncodeReg4TfChip_ENCFF720GFK\ type bigWig\ visibility full\ heartFibro43R Heart - Fibroblasts - Z0000043R bigWig Methylation Atlas: Heart - Fibroblasts - Z0000043R 2 32 178 34 34 216 144 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/heartFibro43R.bw\ color 178,34,34\ longLabel Methylation Atlas: Heart - Fibroblasts - Z0000043R\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 32\ shortLabel Heart - Fibroblasts - Z0000043R\ subGroups cellType=Heart-Fibro dataType=Replicate\ track heartFibro43R\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ gtexCovHeartAtrialAppendage Heart Atr Append bigWig Heart Atrial Appendage 0 32 180 82 205 217 168 230 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13S86-0326-SM-5SI6K.Heart_Atrial_Appendage.RNAseq.bw\ color 180,82,205\ longLabel Heart Atrial Appendage\ parent gtexCov\ shortLabel Heart Atr Append\ track gtexCovHeartAtrialAppendage\ wgEncodeRegDnaseUwHipepicPeak HIPEpiC Pk narrowPeak HIPEpiC iris pigment epithelium DNaseI Peaks from ENCODE 1 32 236 255 85 245 255 170 1 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HIPEpiC Pk\ subGroups view=a_Peaks cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHipepicPeak\ wgEncodeRegDnaseUwHipepicWig HIPEpiC Sg bigWig 0 8028.81 HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE 0 32 236 255 85 245 255 170 0 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.2515\ shortLabel HIPEpiC Sg\ subGroups cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ table wgEncodeRegDnaseUwHipepicSignal\ track wgEncodeRegDnaseUwHipepicWig\ type bigWig 0 8028.81\ wgEncodeReg4TxnLiverMinus Liver - bigWig Avg. - strand total RNA-seq level of 9 liver experiments (tissues and primary cells only) 0 32 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLiverMinus.bw\ color 137,152,82\ longLabel Avg. - strand total RNA-seq level of 9 liver experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn\ priority 32\ shortLabel Liver -\ track wgEncodeReg4TxnLiverMinus\ type bigWig\ netHprcGCA_018504625v1 NA20129.pat netAlign GCA_018504625.1 chainHprcGCA_018504625v1 NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chain Nets 1 32 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA20129.pat NA20129.alt.pat.f1_v2 (May 2021 GCA_018504625.1_NA20129.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504625.1\ parent hprcChainNetViewnet off\ priority 41\ shortLabel NA20129.pat\ subGroups view=net sample=s041 population=afr subpop=asw hap=pat\ track netHprcGCA_018504625v1\ type netAlign GCA_018504625.1 chainHprcGCA_018504625v1\ wgEncodeReg4DnaseAllNose Nose (all biosamples) bigWig DNase level of 1 nose experiment (all biosamples) 0 32 181 131 79 218 193 167 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/noseDNase.bw\ color 181,131,79\ longLabel DNase level of 1 nose experiment (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 32\ shortLabel Nose (all biosamples)\ track wgEncodeReg4DnaseAllNose\ type bigWig\ wgEncodeReg4AtacAllProstate Prostate (all biosamples) bigWig Avg. ATAC level of 3 prostate experiments (all biosamples) 0 32 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/prostateATAC.bw\ color 140,140,140\ longLabel Avg. ATAC level of 3 prostate experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 32\ shortLabel Prostate (all biosamples)\ track wgEncodeReg4AtacAllProstate\ type bigWig\ wgEncodeReg4MarkH3k4me3AllThymus Thymus (all biosamples) bigWig Avg. H3K4me3 level of 2 thymus experiments (all biosamples) 0 32 142 124 195 198 189 225 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/thymusH3K4me3.bw\ color 142,124,195\ longLabel Avg. H3K4me3 level of 2 thymus experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 32\ shortLabel Thymus (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllThymus\ type bigWig\ wgEncodeReg4MarkH3k27acAllThyroid Thyroid (all biosamples) bigWig Avg. H3K27ac level of 4 thyroid experiments (all biosamples) 2 32 27 119 58 141 187 156 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/thyroidH3K27ac.bw\ color 27,119,58\ longLabel Avg. H3K27ac level of 4 thyroid experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 32\ shortLabel Thyroid (all biosamples)\ track wgEncodeReg4MarkH3k27acAllThyroid\ type bigWig\ UCEC UCEC bigLolly 12 + Uterine Corpus Endometrial Carcinoma 0 32 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/UCEC.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Uterine Corpus Endometrial Carcinoma\ parent gdcCancer off\ priority 32\ shortLabel UCEC\ track UCEC\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ ukbb UK Biobank 361k imputed vcfTabix SNV Frequencies: UK Biobank Genotypes - 361k White British, Neale Lab Round 2 imputed 0 32 0 0 0 127 127 127 0 0 0
Description
\\ This track shows allele frequencies and imputation quality scores for\ 13,743,085 variants observed in 361,194 UK Biobank participants of white\ British ancestry. The\ UK Biobank\ is a prospective study of around 500,000 adults aged 40-69 at recruitment\ in the UK, with linked genotype, imaging and health-record data. The\ allele counts shown here are taken from the Neale Lab's open release of\ imputed-v3 GWAS results, which the Lab made freely available as a\ companion to their large phenotype-wide GWAS of UK Biobank (Round 2 of\ the\ Neale Lab\ UK Biobank GWAS).\
\ \\ The Neale Lab pipeline restricts to white British ancestry to limit\ population-stratification confounding in the GWAS. As a consequence the\ frequencies in this track are not representative of the multi-ancestry UK\ Biobank cohort. They describe a single population subset. The\ gnomAD HGDP+1kG,\ ToMMo Japan,\ AllOfUs and other tracks in this\ collection provide complementary frequencies from other populations.\
\ \Display
\\ The track uses the standard UCSC VCF display. Hover over a variant to see\ the allele frequency, imputation INFO score, HWE p-value, hom-ref / het /\ hom-alt sample counts and the most-severe VEP consequence reported by\ the Neale Lab.\
\ \Methods
\\ UK Biobank participants were genotyped on the UK Biobank Axiom and UK\ BiLEVE Axiom arrays. The Wellcome Trust Centre for Human Genetics imputed\ the array data against a combined reference panel of the Haplotype\ Reference Consortium, UK10K and 1000 Genomes Phase 3. This produced\ approximately 90 million imputed SNPs. The Neale Lab Round 2 (imputed-v3)\ analysis started from the 487,409 individuals with phased and imputed\ genotype data, filtered to 361,194 unrelated samples of white British\ ancestry, and retained variants with imputation INFO score above 0.8,\ minor allele frequency above 0.001 (or 1e-6 for coding variants) and\ HWE p-value above 1e-10. The final set has 13.7 million SNPs and short\ indels on chromosomes 1-22 and X. Variant consequences are from Ensembl VEP. See\ the Neale Lab\ data\ processing blog post and the\ UK_Biobank_GWAS\ GitHub repository for the full pipeline.\
\ \\ The variant manifest\ variants.tsv.bgz was downloaded from the Neale Lab\ UK Biobank\ GWAS results page. The Neale Lab release uses GRCh37 coordinates and\ provides chromosome, position, reference and alternate alleles, dbSNP\ rsID, VEP consequence, imputation INFO score, allele count and\ frequency, Hardy-Weinberg p-value and per-genotype sample counts. We\ converted the TSV to a sites-only VCF using a custom Python script and\ lifted the coordinates to GRCh38 with CrossMap and the UCSC\ hg19ToHg38.over.chain. 39,659 rows with allele count zero (variants\ present only in the imputation panel) were dropped, 6,889 failed\ liftOver and 1,834 mapped to alt/random/fix contigs, leaving 13,743,085\ variants in the final file. AN was set to twice the\ n_called field, per the Neale Lab convention.\ The full pipeline is documented in the\ makeDoc\ file of the track, and the conversion script is available from\ our\ GitHub repository.\
\ \Data Access
\\ The variant frequencies can be explored with the\ Table Browser or the\ Data Integrator, and exported to\ spreadsheet or tab-separated tables. From scripts, data can be accessed\ via our REST API\ with track=ukbb.\
\\ The VCF file is also available from\ our\ download server as ukbb.vcf.gz. Individual regions can be\ extracted with tabix, for example\ tabix http://hgdownload.soe.ucsc.edu/gbdb/hg38/varFreqs/ukbb/ukbb.vcf.gz chr21:1-100000000.\ The original Neale Lab manifest variants.tsv.bgz is linked from\ the\ Neale Lab UK\ Biobank GWAS results page and is distributed under UK Biobank's\ data-access conditions.\
\ \Credits
\\ Thanks to the UK Biobank participants and to Benjamin Neale, Liam\ Abbott, Raymond Walters, Duncan Palmer and the rest of the Neale Lab for\ making the Round 2 imputed-v3 GWAS results, including the variant\ manifest used here, publicly available.\
\ \References
\\
Bycroft C, Freeman C, Petkova D, Band G, Elliott LT, Sharp K, Motyer A, Vukcevic D, Delaneau O,\
O'Connell J et al.\
\
The UK Biobank resource with deep phenotyping and genomic data.\
Nature. 2018 Oct;562(7726):203-209.\
PMID: 30305743; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 105\ shortLabel ENCFF753DPM_ENCFF353SJI_ENCFF649LLS_ENCFF554FTX\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO101GPB dataType=typeCcres\ track ENCFF753DPM_ENCFF353SJI_ENCFF649LLS_ENCFF554FTX\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF818OXF ENCSR000AAQ + strand bigWig Renal cortical epithelial cell female adult (69 years) and male adult (84 years) + strand total RNA-seq signal 2 33 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/b4b89ce0-e22e-4adc-a80c-4e0758acf0ba/ENCFF818OXF.bigWig\ color 92,161,153\ longLabel Renal cortical epithelial cell female adult (69 years) and male adult (84 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAQ + strand\ track wgEncodeReg4RnaSeq_ENCFF818OXF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF203CVC ENCSR000ANF Signal bigWig Skeletal muscle myoblast male adult 22 years H3K27ac signal 2 33 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/83ced748-e622-4c43-8805-b53d946ab0b1/ENCFF203CVC.bigWig\ color 181,145,0\ longLabel Skeletal muscle myoblast male adult 22 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANF Signal\ track wgEncodeReg4Epigenetics_ENCFF203CVC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF049WWX ENCSR000AQA Peak bigBed 5 K562 KDM5B peaks 4 33 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/1874e474-857d-4be6-853c-8ff48508dd6f/ENCFF049WWX.bigBed\ labelFields none\ longLabel K562 KDM5B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF049WWX\ type bigBed 5\ useScore 1\ visibility squish\ gtexCovHeartLeftVentricle Heart Left Ventr bigWig Heart Left Ventricle 0 33 122 55 139 188 155 197 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0926-SM-2HMJU.Heart_Left_Ventricle.RNAseq.bw\ color 122,55,139\ longLabel Heart Left Ventricle\ parent gtexCov\ shortLabel Heart Left Ventr\ track gtexCovHeartLeftVentricle\ chainHprcGCA_018471515v1 HG00438.mat chain GCA_018471515.1 HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 33 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471515.1\ parent hprcChainNetViewchain off\ priority 77\ shortLabel HG00438.mat\ subGroups view=chain sample=s077 population=eas subpop=chs hap=mat\ track chainHprcGCA_018471515v1\ type chain GCA_018471515.1\ wgEncodeReg4TxnLungPlus Lung + bigWig Avg. + strand total RNA-seq level of 20 lung experiments (tissues and primary cells only) 0 33 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLungPlus.bw\ color 130,163,45\ longLabel Avg. + strand total RNA-seq level of 20 lung experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 33\ shortLabel Lung +\ track wgEncodeReg4TxnLungPlus\ type bigWig\ wgEncodeReg4DnaseAllOvary Ovary (all biosamples) bigWig Avg. DNase level of 9 ovary experiments (all biosamples) 0 33 161 126 151 208 190 203 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/ovaryDNase.bw\ color 161,126,151\ longLabel Avg. DNase level of 9 ovary experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 33\ shortLabel Ovary (all biosamples)\ track wgEncodeReg4DnaseAllOvary\ type bigWig\ skelMuscMerged Skeletal Muscle Merged bigWig Methylation Atlas: Skeletal Muscle Merged Samples 2 33 139 0 0 197 127 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/skelMuscMerged.bw\ color 139,0,0\ longLabel Methylation Atlas: Skeletal Muscle Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 33\ shortLabel Skeletal Muscle Merged\ subGroups cellType=Skeletal-Musc dataType=Merged\ track skelMuscMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k4me3AllThyroid Thyroid (all biosamples) bigWig Avg. H3K4me3 level of 4 thyroid experiments (all biosamples) 0 33 27 119 58 141 187 156 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/thyroidH3K4me3.bw\ color 27,119,58\ longLabel Avg. H3K4me3 level of 4 thyroid experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 33\ shortLabel Thyroid (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllThyroid\ type bigWig\ UCS UCS bigLolly 12 + Uterine Carcinosarcoma 0 33 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/UCS.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Uterine Carcinosarcoma\ parent gdcCancer off\ priority 33\ shortLabel UCS\ track UCS\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4MarkH3k27acAllUrinaryBladder Urinary bladder (all biosamples) bigWig H3K27ac level of 1 urinary bladder experiment (all biosamples) 2 33 194 33 39 224 144 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/urinaryBladderH3K27ac.bw\ color 194,33,39\ longLabel H3K27ac level of 1 urinary bladder experiment (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 33\ shortLabel Urinary bladder (all biosamples)\ track wgEncodeReg4MarkH3k27acAllUrinaryBladder\ type bigWig\ netDasNov3 Armadillo Net netAlign dasNov3 chainDasNov3 Armadillo (Dec. 2011 (Baylor/dasNov3)) Alignment Net 1 34 0 0 0 255 255 0 0 0 0 compGeno 0 longLabel Armadillo (Dec. 2011 (Baylor/dasNov3)) Alignment Net\ otherDb dasNov3\ parent placentalChainNetViewnet off\ shortLabel Armadillo Net\ subGroups view=net species=s100 clade=c06\ track netDasNov3\ type netAlign dasNov3 chainDasNov3\ encTfChipPkENCFF907WHF A549 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in A549 from ENCODE 3 (ENCFF907WHF) 0 34 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in A549 from ENCODE 3 (ENCFF907WHF)\ parent encTfChipPk off\ shortLabel A549 PHF8\ subGroups cellType=A549 factor=PHF8\ track encTfChipPkENCFF907WHF\ wgEncodeRegDnaseUwAg10803Peak AG10803 Pk narrowPeak AG10803 skin fibroblast DNaseI Peaks from ENCODE 1 34 220 255 85 237 255 170 1 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG10803 Pk\ subGroups view=a_Peaks cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg10803Peak\ wgEncodeRegDnaseUwAg10803Wig AG10803 Sg bigWig 0 19440.9 AG10803 skin fibroblast DNaseI Signal from ENCODE 0 34 220 255 85 237 255 170 0 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.27484\ shortLabel AG10803 Sg\ subGroups cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ table wgEncodeRegDnaseUwAg10803Signal\ track wgEncodeRegDnaseUwAg10803Wig\ type bigWig 0 19440.9\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_rev AorticSmsToFgf2_03hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse 0 34 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_rev AorticSmsToFgf2_03hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse 1 34 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep1%20%28LK19%29.CNhs13345.12648-134H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep1 (LK19)_CNhs13345_12648-134H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12648-134H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep1LK19_CNhs13345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12648-134H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkCtcfAllConnectiveTissue Connective tissue (all biosamples) bigWig Avg. CTCF level of 2 connective tissue experiments (all biosamples) 0 34 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/connectiveTissueCTCF.bw\ color 138,135,169\ longLabel Avg. CTCF level of 2 connective tissue experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 34\ shortLabel Connective tissue (all biosamples)\ track wgEncodeReg4MarkCtcfAllConnectiveTissue\ type bigWig\ ENCFF686OEZ_ENCFF018QTQ_ENCFF461GFM_ENCFF072ETP ENCFF686OEZ_ENCFF018QTQ_ENCFF461GFM_ENCFF072ETP bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (1) cCREs 4 34 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF686OEZ_ENCFF018QTQ_ENCFF461GFM_ENCFF072ETP.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 83\ shortLabel ENCFF686OEZ_ENCFF018QTQ_ENCFF461GFM_ENCFF072ETP\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__88_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO151OJB dataType=typeCcres\ track ENCFF686OEZ_ENCFF018QTQ_ENCFF461GFM_ENCFF072ETP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF732FPG ENCSR000AAQ - strand bigWig Renal cortical epithelial cell female adult (69 years) and male adult (84 years) - strand total RNA-seq signal 2 34 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/789e29b5-78a3-4eab-9dd7-533398f88c3a/ENCFF732FPG.bigWig\ color 92,161,153\ longLabel Renal cortical epithelial cell female adult (69 years) and male adult (84 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAQ - strand\ track wgEncodeReg4RnaSeq_ENCFF732FPG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF195IXA ENCSR000ANK Peak bigBed 5 Skeletal muscle myoblast male adult 22 years H3K4me3 peak 4 34 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/89c7e60d-82f5-46a7-aefb-dd88e55272ff/ENCFF195IXA.bigBed\ color 255,0,0\ longLabel Skeletal muscle myoblast male adult 22 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANK Peak\ track wgEncodeReg4Epigenetics_ENCFF195IXA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF339MLW ENCSR000AQA Signal bigWig K562 KDM5B ENCSR000AQA signal 2 34 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/4caa0a5b-c173-443c-84e5-fbf0170ef084/ENCFF339MLW.bigWig\ color 254,75,173\ longLabel K562 KDM5B ENCSR000AQA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQA Signal\ track wgEncodeReg4TfChip_ENCFF339MLW\ type bigWig\ visibility full\ netHprcGCA_018471515v1 HG00438.mat netAlign GCA_018471515.1 chainHprcGCA_018471515v1 HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chain Nets 1 34 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00438.mat HG00438.pri.mat.f1_v2 (May 2021 GCA_018471515.1_HG00438.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471515.1\ parent hprcChainNetViewnet off\ priority 77\ shortLabel HG00438.mat\ subGroups view=net sample=s077 population=eas subpop=chs hap=mat\ track netHprcGCA_018471515v1\ type netAlign GCA_018471515.1 chainHprcGCA_018471515v1\ gtexCovKidneyCortex Kidney Cortex bigWig Kidney Cortex 0 34 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13OVI-1126-SM-5KLZF.Kidney_Cortex.RNAseq.bw\ color 205,183,158\ longLabel Kidney Cortex\ parent gtexCov\ shortLabel Kidney Cortex\ track gtexCovKidneyCortex\ wgEncodeReg4TxnLungMinus Lung - bigWig Avg. - strand total RNA-seq level of 20 lung experiments (tissues and primary cells only) 0 34 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpLungMinus.bw\ color 130,163,45\ longLabel Avg. - strand total RNA-seq level of 20 lung experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 34\ shortLabel Lung -\ track wgEncodeReg4TxnLungMinus\ type bigWig\ skelMusc427 Skeletal - Muscle - Z00000427 bigWig Methylation Atlas: Skeletal - Muscle - Z00000427 2 34 139 0 0 197 127 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/skelMusc427.bw\ color 139,0,0\ longLabel Methylation Atlas: Skeletal - Muscle - Z00000427\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 34\ shortLabel Skeletal - Muscle - Z00000427\ subGroups cellType=Skeletal-Musc dataType=Replicate\ track skelMusc427\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4AtacAllSkin Skin (all biosamples) bigWig Avg. ATAC level of 3 skin experiments (all biosamples) 0 34 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/skinATAC.bw\ color 127,133,209\ longLabel Avg. ATAC level of 3 skin experiments (all biosamples)\ parent wgEncodeReg4Atac off\ priority 34\ shortLabel Skin (all biosamples)\ track wgEncodeReg4AtacAllSkin\ type bigWig\ wgEncodeReg4DnaseAllSmallIntestine Small intestine (all biosamples) bigWig Avg. DNase level of 17 small intestine experiments (all biosamples) 0 34 98 98 41 176 176 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/smallIntestineDNase.bw\ color 98,98,41\ longLabel Avg. DNase level of 17 small intestine experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 34\ shortLabel Small intestine (all biosamples)\ track wgEncodeReg4DnaseAllSmallIntestine\ type bigWig\ wgEncodeReg4MarkH3k4me3AllUrinaryBladder Urinary bladder (all biosamples) bigWig H3K4me3 level of 1 urinary bladder experiment (all biosamples) 0 34 194 33 39 224 144 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/urinaryBladderH3K4me3.bw\ color 194,33,39\ longLabel H3K4me3 level of 1 urinary bladder experiment (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 34\ shortLabel Urinary bladder (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllUrinaryBladder\ type bigWig\ UVM UVM bigLolly 12 + Uveal Melanoma 0 34 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/UVM.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Uveal Melanoma\ parent gdcCancer off\ priority 34\ shortLabel UVM\ track UVM\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ wgEncodeReg4MarkH3k27acAllVagina Vagina (all biosamples) bigWig Avg. H3K27ac level of 2 vagina experiments (all biosamples) 2 34 255 101 174 255 178 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/vaginaH3K27ac.bw\ color 255,101,174\ longLabel Avg. H3K27ac level of 2 vagina experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 34\ shortLabel Vagina (all biosamples)\ track wgEncodeReg4MarkH3k27acAllVagina\ type bigWig\ wgEncodeGencodeV49 All GENCODE V49 genePred All GENCODE annotations from V49 (Ensembl 115) 3 34.156 0 0 0 127 127 127 0 0 0
Description
\\ The GENCODE Genes track (version 49, Sept 2025) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 49 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 49 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 49 corresponds to Ensembl 115.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V49 (Ensembl 115)\ maxTransEnabled on\ priority 34.156\ shortLabel All GENCODE V49\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV49\ type genePred\ visibility pack\ wgEncodeGencodeVersion 49\ wgEncodeGencodeV49ViewGenes Genes genePred All GENCODE annotations from V49 (Ensembl 115) 3 34.156 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV49 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV49\ longLabel All GENCODE annotations from V49 (Ensembl 115)\ parent wgEncodeGencodeV49\ shortLabel Genes\ track wgEncodeGencodeV49ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV49ViewPolya PolyA genePred All GENCODE annotations from V49 (Ensembl 115) 0 34.156 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V49 (Ensembl 115)\ parent wgEncodeGencodeV49\ shortLabel PolyA\ track wgEncodeGencodeV49ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV48 All GENCODE V48 genePred All GENCODE annotations from V48 (Ensembl 114) 0 34.157 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 48, May 2025) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 48 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 48 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 48 corresponds to Ensembl 114.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V48 (Ensembl 114)\ maxTransEnabled on\ priority 34.157\ shortLabel All GENCODE V48\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV48\ type genePred\ visibility hide\ wgEncodeGencodeVersion 48\ wgEncodeGencodeV48ViewGenes Genes genePred All GENCODE annotations from V48 (Ensembl 114) 3 34.157 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV48 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV48\ longLabel All GENCODE annotations from V48 (Ensembl 114)\ parent wgEncodeGencodeV48\ shortLabel Genes\ track wgEncodeGencodeV48ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV48ViewPolya PolyA genePred All GENCODE annotations from V48 (Ensembl 114) 0 34.157 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V48 (Ensembl 114)\ parent wgEncodeGencodeV48\ shortLabel PolyA\ track wgEncodeGencodeV48ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV47 All GENCODE V47 genePred All GENCODE annotations from V47 (Ensembl 113) 0 34.158 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 47, Oct 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 47 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 47 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 47 corresponds to Ensembl 113.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V47 (Ensembl 113)\ maxTransEnabled on\ priority 34.158\ shortLabel All GENCODE V47\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV47\ type genePred\ visibility hide\ wgEncodeGencodeVersion 47\ wgEncodeGencodeV47ViewGenes Genes genePred All GENCODE annotations from V47 (Ensembl 113) 3 34.158 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,annotation_in_progress,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,annotation_in_progress,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV47 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV47\ longLabel All GENCODE annotations from V47 (Ensembl 113)\ parent wgEncodeGencodeV47\ shortLabel Genes\ track wgEncodeGencodeV47ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV47ViewPolya PolyA genePred All GENCODE annotations from V47 (Ensembl 113) 0 34.158 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V47 (Ensembl 113)\ parent wgEncodeGencodeV47\ shortLabel PolyA\ track wgEncodeGencodeV47ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV46 All GENCODE V46 genePred All GENCODE annotations from V46 (Ensembl 112) 0 34.159 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 46, May 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 46 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 46 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 46 corresponds to Ensembl 112.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V46 (Ensembl 112)\ maxTransEnabled on\ priority 34.159\ shortLabel All GENCODE V46\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV46\ type genePred\ visibility hide\ wgEncodeGencodeVersion 46\ wgEncodeGencodeV46ViewGenes Genes genePred All GENCODE annotations from V46 (Ensembl 112) 3 34.159 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,annotation_in_progress,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,annotation_in_progress,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,confirm_experimentally,dotter_confirmed,downstream_ATG,Ensembl_canonical,EnsEMBL_merge_exception,exp_conf,fragmented_locus,fragmented_mixed_strand_locus,GENCODE_Primary,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,polymorphic_pseudogene_no_stop,precursor_RNA,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,Selenoprotein,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV46 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV46\ longLabel All GENCODE annotations from V46 (Ensembl 112)\ parent wgEncodeGencodeV46\ shortLabel Genes\ track wgEncodeGencodeV46ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV46ViewPolya PolyA genePred All GENCODE annotations from V46 (Ensembl 112) 0 34.159 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V46 (Ensembl 112)\ parent wgEncodeGencodeV46\ shortLabel PolyA\ track wgEncodeGencodeV46ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV45 All GENCODE V45 genePred All GENCODE annotations from V45 (Ensembl 111) 0 34.16 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 45, Jan 2024) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 45 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 45 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 45 corresponds to Ensembl 111.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V45 (Ensembl 111)\ maxTransEnabled on\ priority 34.160\ shortLabel All GENCODE V45\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV45\ type genePred\ visibility hide\ wgEncodeGencodeVersion 45\ wgEncodeGencodeV45ViewGenes Genes genePred All GENCODE annotations from V45 (Ensembl 111) 3 34.16 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV45 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV45\ longLabel All GENCODE annotations from V45 (Ensembl 111)\ parent wgEncodeGencodeV45\ shortLabel Genes\ track wgEncodeGencodeV45ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV45ViewPolya PolyA genePred All GENCODE annotations from V45 (Ensembl 111) 0 34.16 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V45 (Ensembl 111)\ parent wgEncodeGencodeV45\ shortLabel PolyA\ track wgEncodeGencodeV45ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV44 All GENCODE V44 genePred All GENCODE annotations from V44 (Ensembl 110) 0 34.161 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 44, July 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 44 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 44 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 44 corresponds to Ensembl 110.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V44 (Ensembl 110)\ maxTransEnabled on\ priority 34.161\ shortLabel All GENCODE V44\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV44\ type genePred\ visibility hide\ wgEncodeGencodeVersion 44\ wgEncodeGencodeV44ViewGenes Genes genePred All GENCODE annotations from V44 (Ensembl 110) 3 34.161 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV44 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV44\ longLabel All GENCODE annotations from V44 (Ensembl 110)\ parent wgEncodeGencodeV44\ shortLabel Genes\ track wgEncodeGencodeV44ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV44ViewPolya PolyA genePred All GENCODE annotations from V44 (Ensembl 110) 0 34.161 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V44 (Ensembl 110)\ parent wgEncodeGencodeV44\ shortLabel PolyA\ track wgEncodeGencodeV44ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV43 All GENCODE V43 genePred All GENCODE annotations from V43 (Ensembl 109) 0 34.162 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 43, Feb 2023) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 43 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 43 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 43 corresponds to Ensembl 109.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V43 (Ensembl 109)\ maxTransEnabled on\ priority 34.162\ shortLabel All GENCODE V43\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV43\ type genePred\ visibility hide\ wgEncodeGencodeVersion 43\ wgEncodeGencodeV43ViewGenes Genes genePred All GENCODE annotations from V43 (Ensembl 109) 3 34.162 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV43 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV43\ longLabel All GENCODE annotations from V43 (Ensembl 109)\ parent wgEncodeGencodeV43\ shortLabel Genes\ track wgEncodeGencodeV43ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV43ViewPolya PolyA genePred All GENCODE annotations from V43 (Ensembl 109) 0 34.162 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V43 (Ensembl 109)\ parent wgEncodeGencodeV43\ shortLabel PolyA\ track wgEncodeGencodeV43ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV42 All GENCODE V42 genePred All GENCODE annotations from V42 (Ensembl 108) 0 34.163 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 42, Oct 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 42 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 42 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 42 corresponds to Ensembl 108.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V42 (Ensembl 108)\ maxTransEnabled on\ priority 34.163\ shortLabel All GENCODE V42\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes bPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV42\ type genePred\ visibility hide\ wgEncodeGencodeVersion 42\ wgEncodeGencodeV42ViewGenes Genes genePred All GENCODE annotations from V42 (Ensembl 108) 3 34.163 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_CDS_not_defined,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,overlaps_pseudogene,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV42 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV42\ longLabel All GENCODE annotations from V42 (Ensembl 108)\ parent wgEncodeGencodeV42\ shortLabel Genes\ track wgEncodeGencodeV42ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV42ViewPolya PolyA genePred All GENCODE annotations from V42 (Ensembl 108) 0 34.163 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V42 (Ensembl 108)\ parent wgEncodeGencodeV42\ shortLabel PolyA\ track wgEncodeGencodeV42ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV41View2Way 2-Way genePred All GENCODE annotations from V41 (Ensembl 107) 0 34.164 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ parent wgEncodeGencodeV41\ shortLabel 2-Way\ track wgEncodeGencodeV41View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV41 All GENCODE V41 genePred All GENCODE annotations from V41 (Ensembl 107) 0 34.164 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 41, July 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 41 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 41 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 41 corresponds to Ensembl 107.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ priority 34.164\ shortLabel All GENCODE V41\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper pack\ track wgEncodeGencodeV41\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV41\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV41\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV41\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV41\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV41\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV41\ wgEncodeGencodePdb wgEncodeGencodePdbV41\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV41\ wgEncodeGencodePubMed wgEncodeGencodePubMedV41\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV41\ wgEncodeGencodeTag wgEncodeGencodeTagV41\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV41\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV41\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV41\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV41\ wgEncodeGencodeVersion 41\ wgEncodeGencodeV41ViewGenes Genes genePred All GENCODE annotations from V41 (Ensembl 107) 3 34.164 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=artifact,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,processed_pseudogene,processed_transcript,protein_coding,protein_coding_LoF,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,artifactual_duplication,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_gene,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV41 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV41\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ parent wgEncodeGencodeV41\ shortLabel Genes\ track wgEncodeGencodeV41ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV41ViewPolya PolyA genePred All GENCODE annotations from V41 (Ensembl 107) 0 34.164 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V41 (Ensembl 107)\ parent wgEncodeGencodeV41\ shortLabel PolyA\ track wgEncodeGencodeV41ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV40View2Way 2-Way genePred All GENCODE annotations from V40 (Ensembl 106) 0 34.165 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ parent wgEncodeGencodeV40\ shortLabel 2-Way\ track wgEncodeGencodeV40View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV40 All GENCODE V40 genePred All GENCODE annotations from V40 (Ensembl 106) 0 34.165 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 40, Feb 2022) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 40 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 40 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 40 corresponds to Ensembl 106.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ priority 34.165\ shortLabel All GENCODE V40\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV40\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV40\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV40\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV40\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV40\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV40\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV40\ wgEncodeGencodePdb wgEncodeGencodePdbV40\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV40\ wgEncodeGencodePubMed wgEncodeGencodePubMedV40\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV40\ wgEncodeGencodeTag wgEncodeGencodeTagV40\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV40\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV40\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV40\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV40\ wgEncodeGencodeVersion 40\ wgEncodeGencodeV40ViewGenes Genes genePred All GENCODE annotations from V40 (Ensembl 106) 3 34.165 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV40 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV40\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ parent wgEncodeGencodeV40\ shortLabel Genes\ track wgEncodeGencodeV40ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV40ViewPolya PolyA genePred All GENCODE annotations from V40 (Ensembl 106) 0 34.165 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V40 (Ensembl 106)\ parent wgEncodeGencodeV40\ shortLabel PolyA\ track wgEncodeGencodeV40ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV39View2Way 2-Way genePred All GENCODE annotations from V39 (Ensembl 105) 0 34.166 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ parent wgEncodeGencodeV39\ shortLabel 2-Way\ track wgEncodeGencodeV39View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV39 All GENCODE V39 genePred All GENCODE annotations from V39 (Ensembl 105) 0 34.166 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 39, Oct 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 39 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 39 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 39 corresponds to Ensembl 105.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ priority 34.166\ shortLabel All GENCODE V39\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV39\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV39\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV39\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV39\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV39\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV39\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV39\ wgEncodeGencodePdb wgEncodeGencodePdbV39\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV39\ wgEncodeGencodePubMed wgEncodeGencodePubMedV39\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV39\ wgEncodeGencodeTag wgEncodeGencodeTagV39\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV39\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV39\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV39\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV39\ wgEncodeGencodeVersion 39\ wgEncodeGencodeV39ViewGenes Genes genePred All GENCODE annotations from V39 (Ensembl 105) 3 34.166 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV39 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV39\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ parent wgEncodeGencodeV39\ shortLabel Genes\ track wgEncodeGencodeV39ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV39ViewPolya PolyA genePred All GENCODE annotations from V39 (Ensembl 105) 0 34.166 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V39 (Ensembl 105)\ parent wgEncodeGencodeV39\ shortLabel PolyA\ track wgEncodeGencodeV39ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV38View2Way 2-Way genePred All GENCODE annotations from V38 (Ensembl 104) 0 34.167 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ parent wgEncodeGencodeV38\ shortLabel 2-Way\ track wgEncodeGencodeV38View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV38 All GENCODE V38 genePred All GENCODE annotations from V38 (Ensembl 104) 0 34.167 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 38, May 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 38 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 38 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 38 corresponds to Ensembl 104.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ priority 34.167\ shortLabel All GENCODE V38\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV38\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV38\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV38\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV38\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV38\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV38\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV38\ wgEncodeGencodePdb wgEncodeGencodePdbV38\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV38\ wgEncodeGencodePubMed wgEncodeGencodePubMedV38\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV38\ wgEncodeGencodeTag wgEncodeGencodeTagV38\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV38\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV38\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV38\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV38\ wgEncodeGencodeVersion 38\ wgEncodeGencodeV38ViewGenes Genes genePred All GENCODE annotations from V38 (Ensembl 104) 3 34.167 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,Ensembl_canonical,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV38 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV38\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ parent wgEncodeGencodeV38\ shortLabel Genes\ track wgEncodeGencodeV38ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV38ViewPolya PolyA genePred All GENCODE annotations from V38 (Ensembl 104) 0 34.167 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V38 (Ensembl 104)\ parent wgEncodeGencodeV38\ shortLabel PolyA\ track wgEncodeGencodeV38ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV37View2Way 2-Way genePred All GENCODE annotations from V37 (Ensembl 103) 0 34.168 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ parent wgEncodeGencodeV37\ shortLabel 2-Way\ track wgEncodeGencodeV37View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV37 All GENCODE V37 genePred All GENCODE annotations from V37 (Ensembl 103) 0 34.168 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 37, Feb 2021) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 37 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 37 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 37 corresponds to Ensembl 103.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ priority 34.168\ shortLabel All GENCODE V37\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV37\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV37\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV37\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV37\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV37\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV37\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV37\ wgEncodeGencodePdb wgEncodeGencodePdbV37\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV37\ wgEncodeGencodePubMed wgEncodeGencodePubMedV37\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV37\ wgEncodeGencodeTag wgEncodeGencodeTagV37\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV37\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV37\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV37\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV37\ wgEncodeGencodeVersion 37\ wgEncodeGencodeV37ViewGenes Genes genePred All GENCODE annotations from V37 (Ensembl 103) 3 34.168 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Plus_Clinical,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV37 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV37\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ parent wgEncodeGencodeV37\ shortLabel Genes\ track wgEncodeGencodeV37ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV37ViewPolya PolyA genePred All GENCODE annotations from V37 (Ensembl 103) 0 34.168 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V37 (Ensembl 103)\ parent wgEncodeGencodeV37\ shortLabel PolyA\ track wgEncodeGencodeV37ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV36View2Way 2-Way genePred All GENCODE annotations from V36 (Ensembl 102) 0 34.169 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ parent wgEncodeGencodeV36\ shortLabel 2-Way\ track wgEncodeGencodeV36View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV36 All GENCODE V36 genePred All GENCODE annotations from V36 (Ensembl 102) 0 34.169 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 36, Nov 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 36 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 36 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 36 corresponds to Ensembl 102.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ priority 34.169\ shortLabel All GENCODE V36\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV36\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV36\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV36\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV36\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV36\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV36\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV36\ wgEncodeGencodePdb wgEncodeGencodePdbV36\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV36\ wgEncodeGencodePubMed wgEncodeGencodePubMedV36\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV36\ wgEncodeGencodeTag wgEncodeGencodeTagV36\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV36\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV36\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV36\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV36\ wgEncodeGencodeVersion 36\ wgEncodeGencodeV36ViewGenes Genes genePred All GENCODE annotations from V36 (Ensembl 102) 3 34.169 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV36 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV36\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ parent wgEncodeGencodeV36\ shortLabel Genes\ track wgEncodeGencodeV36ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV36ViewPolya PolyA genePred All GENCODE annotations from V36 (Ensembl 102) 0 34.169 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V36 (Ensembl 102)\ parent wgEncodeGencodeV36\ shortLabel PolyA\ track wgEncodeGencodeV36ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV35View2Way 2-Way genePred All GENCODE annotations from V35 (Ensembl 101) 0 34.17 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ parent wgEncodeGencodeV35\ shortLabel 2-Way\ track wgEncodeGencodeV35View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV35 All GENCODE V35 genePred All GENCODE annotations from V35 (Ensembl 101) 0 34.17 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 35, Aug 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 35 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 35 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 35 corresponds to Ensembl 101.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ priority 34.170\ shortLabel All GENCODE V35\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV35\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV35\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV35\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV35\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV35\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV35\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV35\ wgEncodeGencodePdb wgEncodeGencodePdbV35\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV35\ wgEncodeGencodePubMed wgEncodeGencodePubMedV35\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV35\ wgEncodeGencodeTag wgEncodeGencodeTagV35\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV35\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV35\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV35\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV35\ wgEncodeGencodeVersion 35\ wgEncodeGencodeV35ViewGenes Genes genePred All GENCODE annotations from V35 (Ensembl 101) 3 34.17 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vault_RNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV35 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV35\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ parent wgEncodeGencodeV35\ shortLabel Genes\ track wgEncodeGencodeV35ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV35ViewPolya PolyA genePred All GENCODE annotations from V35 (Ensembl 101) 0 34.17 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V35 (Ensembl 101)\ parent wgEncodeGencodeV35\ shortLabel PolyA\ track wgEncodeGencodeV35ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV34View2Way 2-Way genePred All GENCODE annotations from V34 (Ensembl 100) 0 34.171 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ parent wgEncodeGencodeV34\ shortLabel 2-Way\ track wgEncodeGencodeV34View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV34 All GENCODE V34 genePred All GENCODE annotations from V34 (Ensembl 100) 0 34.171 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 34, April 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 34 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 34 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 34 corresponds to Ensembl 100.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ priority 34.171\ shortLabel All GENCODE V34\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV34\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV34\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV34\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV34\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV34\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV34\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV34\ wgEncodeGencodePdb wgEncodeGencodePdbV34\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV34\ wgEncodeGencodePubMed wgEncodeGencodePubMedV34\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV34\ wgEncodeGencodeTag wgEncodeGencodeTagV34\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV34\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV34\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV34\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV34\ wgEncodeGencodeVersion 34\ wgEncodeGencodeV34ViewGenes Genes genePred All GENCODE annotations from V34 (Ensembl 100) 3 34.171 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV34 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV34\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ parent wgEncodeGencodeV34\ shortLabel Genes\ track wgEncodeGencodeV34ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV34ViewPolya PolyA genePred All GENCODE annotations from V34 (Ensembl 100) 0 34.171 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V34 (Ensembl 100)\ parent wgEncodeGencodeV34\ shortLabel PolyA\ track wgEncodeGencodeV34ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV33View2Way 2-Way genePred All GENCODE annotations from V33 (Ensembl 99) 0 34.172 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ parent wgEncodeGencodeV33\ shortLabel 2-Way\ track wgEncodeGencodeV33View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV33 All GENCODE V33 genePred All GENCODE annotations from V33 (Ensembl 99) 0 34.172 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 33, Jan 2020) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 33 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 33 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 33 corresponds to Ensembl 99.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ priority 34.172\ shortLabel All GENCODE V33\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV33\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV33\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV33\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV33\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV33\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV33\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV33\ wgEncodeGencodePdb wgEncodeGencodePdbV33\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV33\ wgEncodeGencodePubMed wgEncodeGencodePubMedV33\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV33\ wgEncodeGencodeTag wgEncodeGencodeTagV33\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV33\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV33\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV33\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV33\ wgEncodeGencodeVersion 33\ wgEncodeGencodeV33ViewGenes Genes genePred All GENCODE annotations from V33 (Ensembl 99) 3 34.172 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV33 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV33\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ parent wgEncodeGencodeV33\ shortLabel Genes\ track wgEncodeGencodeV33ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV33ViewPolya PolyA genePred All GENCODE annotations from V33 (Ensembl 99) 0 34.172 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V33 (Ensembl 99)\ parent wgEncodeGencodeV33\ shortLabel PolyA\ track wgEncodeGencodeV33ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV32View2Way 2-Way genePred All GENCODE annotations from V32 (Ensembl 98) 0 34.173 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ parent wgEncodeGencodeV32\ shortLabel 2-Way\ track wgEncodeGencodeV32View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV32 All GENCODE V32 genePred All GENCODE annotations from V32 (Ensembl 98) 0 34.173 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 32, Sept 2019) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 32 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\GENCODE GFF3 and GTF files are available from the\ GENCODE release 32 site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 32 corresponds to Ensembl 98.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ priority 34.173\ shortLabel All GENCODE V32\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV32\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV32\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV32\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV32\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV32\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV32\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV32\ wgEncodeGencodePdb wgEncodeGencodePdbV32\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV32\ wgEncodeGencodePubMed wgEncodeGencodePubMedV32\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV32\ wgEncodeGencodeTag wgEncodeGencodeTagV32\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV32\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV32\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV32\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV32\ wgEncodeGencodeVersion 32\ wgEncodeGencodeV32ViewGenes Genes genePred All GENCODE annotations from V32 (Ensembl 98) 3 34.173 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,stop_codon_readthrough,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV32 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV32\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ parent wgEncodeGencodeV32\ shortLabel Genes\ track wgEncodeGencodeV32ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV32ViewPolya PolyA genePred All GENCODE annotations from V32 (Ensembl 98) 0 34.173 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V32 (Ensembl 98)\ parent wgEncodeGencodeV32\ shortLabel PolyA\ track wgEncodeGencodeV32ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV31View2Way 2-Way genePred All GENCODE annotations from V31 (Ensembl 97) 0 34.174 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ parent wgEncodeGencodeV31\ shortLabel 2-Way\ track wgEncodeGencodeV31View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV31 All GENCODE V31 genePred All GENCODE annotations from V31 (Ensembl 97) 0 34.174 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 31, June 2019) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 31 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 31\ site.
\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 31 corresponds to Ensembl 97.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ priority 34.174\ shortLabel All GENCODE V31\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV31\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV31\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV31\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV31\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV31\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV31\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV31\ wgEncodeGencodePdb wgEncodeGencodePdbV31\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV31\ wgEncodeGencodePubMed wgEncodeGencodePubMedV31\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV31\ wgEncodeGencodeTag wgEncodeGencodeTagV31\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV31\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV31\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV31\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV31\ wgEncodeGencodeVersion 31\ wgEncodeGencodeV31ViewGenes Genes genePred All GENCODE annotations from V31 (Ensembl 97) 3 34.174 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,TAGENE,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV31 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV31\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ parent wgEncodeGencodeV31\ shortLabel Genes\ track wgEncodeGencodeV31ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV31ViewPolya PolyA genePred All GENCODE annotations from V31 (Ensembl 97) 0 34.174 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V31 (Ensembl 97)\ parent wgEncodeGencodeV31\ shortLabel PolyA\ track wgEncodeGencodeV31ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV30View2Way 2-Way genePred All GENCODE annotations from V30 (Ensembl 96) 0 34.175 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ parent wgEncodeGencodeV30\ shortLabel 2-Way\ track wgEncodeGencodeV30View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV30 All GENCODE V30 genePred All GENCODE annotations from V30 (Ensembl 96) 0 34.175 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 30, Apr 2019) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 30 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 30 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 30 corresponds to Ensembl 96.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ priority 34.175\ shortLabel All GENCODE V30\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV30\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV30\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV30\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV30\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV30\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV30\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV30\ wgEncodeGencodePdb wgEncodeGencodePdbV30\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV30\ wgEncodeGencodePubMed wgEncodeGencodePubMedV30\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV30\ wgEncodeGencodeTag wgEncodeGencodeTagV30\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV30\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV30\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV30\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV30\ wgEncodeGencodeVersion 30\ wgEncodeGencodeV30ViewGenes Genes genePred All GENCODE annotations from V30 (Ensembl 96) 3 34.175 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,MANE_Select,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV30 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV30\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ parent wgEncodeGencodeV30\ shortLabel Genes\ track wgEncodeGencodeV30ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV30ViewPolya PolyA genePred All GENCODE annotations from V30 (Ensembl 96) 0 34.175 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V30 (Ensembl 96)\ parent wgEncodeGencodeV30\ shortLabel PolyA\ track wgEncodeGencodeV30ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV29View2Way 2-Way genePred All GENCODE annotations from V29 (Ensembl 94) 0 34.176 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ parent wgEncodeGencodeV29\ shortLabel 2-Way\ track wgEncodeGencodeV29View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV29 All GENCODE V29 genePred All GENCODE annotations from V29 (Ensembl 94) 0 34.176 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 29, Oct 2018) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 29 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 29 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 29 corresponds to Ensembl 94.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ priority 34.176\ shortLabel All GENCODE V29\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV29\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV29\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV29\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV29\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV29\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV29\ wgEncodeGencodeHgnc wgEncodeGencodeHgncV29\ wgEncodeGencodePdb wgEncodeGencodePdbV29\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV29\ wgEncodeGencodePubMed wgEncodeGencodePubMedV29\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV29\ wgEncodeGencodeTag wgEncodeGencodeTagV29\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV29\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV29\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV29\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV29\ wgEncodeGencodeVersion 29\ wgEncodeGencodeV29ViewGenes Genes genePred All GENCODE annotations from V29 (Ensembl 94) 3 34.176 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,rRNA_pseudogene,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV29 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV29\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ parent wgEncodeGencodeV29\ shortLabel Genes\ track wgEncodeGencodeV29ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV29ViewPolya PolyA genePred All GENCODE annotations from V29 (Ensembl 94) 0 34.176 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V29 (Ensembl 94)\ parent wgEncodeGencodeV29\ shortLabel PolyA\ track wgEncodeGencodeV29ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV28View2Way 2-Way genePred All GENCODE annotations from V28 (Ensembl 92) 0 34.177 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ parent wgEncodeGencodeV28\ shortLabel 2-Way\ track wgEncodeGencodeV28View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV28 All GENCODE V28 genePred All GENCODE annotations from V28 (Ensembl 92) 0 34.177 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 28, Apr 2018) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 28 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 28 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 28 corresponds to Ensembl 92.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ priority 34.177\ shortLabel All GENCODE V28\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV28\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV28\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV28\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV28\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV28\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV28\ wgEncodeGencodePdb wgEncodeGencodePdbV28\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV28\ wgEncodeGencodePubMed wgEncodeGencodePubMedV28\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV28\ wgEncodeGencodeTag wgEncodeGencodeTagV28\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV28\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV28\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV28\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV28\ wgEncodeGencodeVersion 28\ wgEncodeGencodeV28ViewGenes Genes genePred All GENCODE annotations from V28 (Ensembl 92) 3 34.177 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CAGE_supported_TSS,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV28 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV28\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ parent wgEncodeGencodeV28\ shortLabel Genes\ track wgEncodeGencodeV28ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV28ViewPolya PolyA genePred All GENCODE annotations from V28 (Ensembl 92) 0 34.177 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V28 (Ensembl 92)\ parent wgEncodeGencodeV28\ shortLabel PolyA\ track wgEncodeGencodeV28ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV27View2Way 2-Way genePred All GENCODE annotations from V27 (Ensembl 90) 0 34.178 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ parent wgEncodeGencodeV27\ shortLabel 2-Way\ track wgEncodeGencodeV27View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV27 All GENCODE V27 genePred All GENCODE annotations from V27 (Ensembl 90) 0 34.178 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 27, Aug 2017) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 27 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 27 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 27 corresponds to Ensembl 90.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ priority 34.178\ shortLabel All GENCODE V27\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV27\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV27\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV27\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV27\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV27\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV27\ wgEncodeGencodePdb wgEncodeGencodePdbV27\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV27\ wgEncodeGencodePubMed wgEncodeGencodePubMedV27\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV27\ wgEncodeGencodeTag wgEncodeGencodeTagV27\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV27\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV27\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV27\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV27\ wgEncodeGencodeVersion 27\ wgEncodeGencodeV27ViewGenes Genes genePred All GENCODE annotations from V27 (Ensembl 90) 3 34.178 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense_RNA,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense_RNA,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,fragmented_locus,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,ncRNA_host,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,orphan,overlapping_locus,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,reference_genome_error,retained_intron_CDS,retained_intron_final,retained_intron_first,retrogene,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,semi_processed,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV27 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV27\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ parent wgEncodeGencodeV27\ shortLabel Genes\ track wgEncodeGencodeV27ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV27ViewPolya PolyA genePred All GENCODE annotations from V27 (Ensembl 90) 0 34.178 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V27 (Ensembl 90)\ parent wgEncodeGencodeV27\ shortLabel PolyA\ track wgEncodeGencodeV27ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV26View2Way 2-Way genePred All GENCODE annotations from V26 (Ensembl 88) 0 34.179 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ parent wgEncodeGencodeV26\ shortLabel 2-Way\ track wgEncodeGencodeV26View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV26 All GENCODE V26 genePred All GENCODE annotations from V26 (Ensembl 88) 0 34.179 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 26, March 2017) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The 26 annotation was carried out on genome assembly GRCh38 (hg38).\
\\ The Ensembl human and mouse data sets are the same gene annotations as GENCODE for the\ corresponding release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 26 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 26 corresponds to Ensembl 88.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ priority 34.179\ shortLabel All GENCODE V26\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV26\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV26\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV26\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV26\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV26\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV26\ wgEncodeGencodePdb wgEncodeGencodePdbV26\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV26\ wgEncodeGencodePubMed wgEncodeGencodePubMedV26\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV26\ wgEncodeGencodeTag wgEncodeGencodeTagV26\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV26\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV26\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV26\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV26\ wgEncodeGencodeVersion 26\ wgEncodeGencodeV26ViewGenes Genes genePred All GENCODE annotations from V26 (Ensembl 88) 3 34.179 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=3_nested_supported_extension,3_standard_supported_extension,454_RNA_Seq_supported,5_nested_supported_extension,5_standard_supported_extension,alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,nested_454_RNA_Seq_supported,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_D_pseudogene,IG_J_gene,IG_LV_gene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV26 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV26\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ parent wgEncodeGencodeV26\ shortLabel Genes\ track wgEncodeGencodeV26ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV26ViewPolya PolyA genePred All GENCODE annotations from V26 (Ensembl 88) 0 34.179 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE annotations from V26 (Ensembl 88)\ parent wgEncodeGencodeV26\ shortLabel PolyA\ track wgEncodeGencodeV26ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV25View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V25 0 34.18 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V25\ parent wgEncodeGencodeV25\ shortLabel 2-Way\ track wgEncodeGencodeV25View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV25 All GENCODE V25 genePred All GENCODE transcripts including comprehensive set V25 0 34.18 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 25, July 2016) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\
\\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 25 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
\
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 25 corresponds to Ensembl 85.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V25\ priority 34.180\ shortLabel All GENCODE V25\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV25\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV25\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV25\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV25\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV25\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV25\ wgEncodeGencodePdb wgEncodeGencodePdbV25\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV25\ wgEncodeGencodePubMed wgEncodeGencodePubMedV25\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV25\ wgEncodeGencodeTag wgEncodeGencodeTagV25\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV25\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV25\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV25\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV25\ wgEncodeGencodeVersion 25\ wgEncodeGencodeV25ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V25 3 34.18 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncRNA,antisense,bidirectional_promoter_lncRNA,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,scRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,bicistronic,CCDS,cds_end_NF,cds_start_NF,dotter_confirmed,downstream_ATG,exp_conf,inferred_exon_combination,inferred_transcript_model,low_sequence_quality,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,non_submitted_evidence,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,pseudo_consens,readthrough_transcript,retained_intron_CDS,retained_intron_final,retained_intron_first,RNA_Seq_supported_only,RNA_Seq_supported_partial,RP_supported_TIS,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV25 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV25\ longLabel All GENCODE transcripts including comprehensive set V25\ parent wgEncodeGencodeV25\ shortLabel Genes\ track wgEncodeGencodeV25ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV25ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V25 0 34.18 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V25\ parent wgEncodeGencodeV25\ shortLabel PolyA\ track wgEncodeGencodeV25ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV24View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V24 0 34.181 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V24\ parent wgEncodeGencodeV24\ shortLabel 2-Way\ track wgEncodeGencodeV24View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV24 All GENCODE V24 genePred All GENCODE transcripts including comprehensive set V24 0 34.181 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 24, December 2015) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\
\\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 24 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
\
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 24 corresponds to Ensembl 84.
\ \See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V24\ priority 34.181\ shortLabel All GENCODE V24\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV24\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV24\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV24\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV24\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV24\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV24\ wgEncodeGencodePdb wgEncodeGencodePdbV24\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV24\ wgEncodeGencodePubMed wgEncodeGencodePubMedV24\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV24\ wgEncodeGencodeTag wgEncodeGencodeTagV24\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV24\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV24\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV24\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV24\ wgEncodeGencodeVersion 24\ wgEncodeGencodeV24ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V24 3 34.181 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV24 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV24\ longLabel All GENCODE transcripts including comprehensive set V24\ parent wgEncodeGencodeV24\ shortLabel Genes\ track wgEncodeGencodeV24ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV24ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V24 0 34.181 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V24\ parent wgEncodeGencodeV24\ shortLabel PolyA\ track wgEncodeGencodeV24ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV23View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V23 0 34.182 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V23\ parent wgEncodeGencodeV23\ shortLabel 2-Way\ track wgEncodeGencodeV23View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV23 All GENCODE V23 genePred All GENCODE transcripts including comprehensive set V23 0 34.182 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 23, March 2015) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\
\\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Downloads
\ GENCODE GFF3 and GTF files are available from the\ GENCODE release 23 site.\ \Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 23 corresponds to Ensembl 81 and 82.
\ \See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V23\ priority 34.182\ shortLabel All GENCODE V23\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV23\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV23\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV23\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV23\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV23\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV23\ wgEncodeGencodePdb wgEncodeGencodePdbV23\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV23\ wgEncodeGencodePubMed wgEncodeGencodePubMedV23\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV23\ wgEncodeGencodeTag wgEncodeGencodeTagV23\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV23\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV23\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV23\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV23\ wgEncodeGencodeVersion 23\ wgEncodeGencodeV23ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V23 3 34.182 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV23 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV23\ longLabel All GENCODE transcripts including comprehensive set V23\ parent wgEncodeGencodeV23\ shortLabel Genes\ track wgEncodeGencodeV23ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV23ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V23 0 34.182 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V23\ parent wgEncodeGencodeV23\ shortLabel PolyA\ track wgEncodeGencodeV23ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV22View2Way 2-Way genePred All GENCODE transcripts including comprehensive set V22 0 34.183 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V22\ parent wgEncodeGencodeV22\ shortLabel 2-Way\ track wgEncodeGencodeV22View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV22 All GENCODE V22 genePred All GENCODE transcripts including comprehensive set V22 0 34.183 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 22, March 2015) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\
\\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release.\
\Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
\
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 22 corresponds to Ensembl 79.
\See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel All GENCODE transcripts including comprehensive set V22\ priority 34.183\ shortLabel All GENCODE V22\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV22\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV22\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV22\ wgEncodeGencodeEntrezGene wgEncodeGencodeEntrezGeneV22\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV22\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV22\ wgEncodeGencodePdb wgEncodeGencodePdbV22\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV22\ wgEncodeGencodePubMed wgEncodeGencodePubMedV22\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV22\ wgEncodeGencodeTag wgEncodeGencodeTagV22\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV22\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV22\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV22\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV22\ wgEncodeGencodeVersion 22\ wgEncodeGencodeV22ViewGenes Genes genePred All GENCODE transcripts including comprehensive set V22 3 34.183 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,macro_lncRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_coding,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,ribozyme,rRNA,scaRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,sRNA,TEC,transcribed_processed_pseudogene,transcribed_unitary_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,translated_unprocessed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene,vaultRNA tag:Tag=alternative_3_UTR,alternative_5_UTR,appris_alternative_1,appris_alternative_2,appris_principal_1,appris_principal_2,appris_principal_3,appris_principal_4,appris_principal_5,basic,CCDS,cds_end_NF,cds_start_NF,downstream_ATG,exp_conf,mRNA_end_NF,mRNA_start_NF,NAGNAG_splice_site,NMD_exception,NMD_likely_if_extended,non_ATG_start,non_canonical_conserved,non_canonical_genome_sequence_error,non_canonical_other,non_canonical_polymorphism,non_canonical_TEC,non_canonical_U12,not_best_in_genome_evidence,not_organism_supported,overlapping_uORF,PAR,pseudo_consens,readthrough_transcript,seleno,sequence_error,upstream_ATG,upstream_uORF supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV22 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV22\ longLabel All GENCODE transcripts including comprehensive set V22\ parent wgEncodeGencodeV22\ shortLabel Genes\ track wgEncodeGencodeV22ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV22ViewPolya PolyA genePred All GENCODE transcripts including comprehensive set V22 0 34.183 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel All GENCODE transcripts including comprehensive set V22\ parent wgEncodeGencodeV22\ shortLabel PolyA\ track wgEncodeGencodeV22ViewPolya\ type genePred\ view cPolya\ visibility hide\ wgEncodeGencodeV20View2Way 2-Way genePred Gene Annotations from GENCODE Version 20 (Ensembl 76) 0 34.185 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20\ shortLabel 2-Way\ track wgEncodeGencodeV20View2Way\ type genePred\ view b2-way\ visibility hide\ wgEncodeGencodeV20 GENCODE V20 (Ensembl 76) genePred Gene Annotations from GENCODE Version 20 (Ensembl 76) 0 34.185 0 0 0 127 127 127 0 0 0Description
\\ The GENCODE Genes track (version 20, August 2014) shows high-quality manual\ annotations merged with evidence-based automated annotations across the entire\ human genome generated by the\ GENCODE project.\ The GENCODE gene set presents a full merge\ between HAVANA manual annotation process and Ensembl automatic annotation pipeline.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations.\ The annotation was carried out on genome assembly GRCh38 (hg38).\
\\ As of GENCODE Version 11, Ensembl and GENCODE have converged. The gene\ annotations in the GENCODE comprehensive set are the same as the corresponding\ Ensembl release. UCSC will continue to provide a separate Ensembl track on\ Human in the same format as the Ensembl tracks on other organisms.\
\ \Display Conventions and Configuration
\\ This track is a multi-view composite track that contains differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ To show only selected subtracks, uncheck the boxes next to the tracks that\ you wish to hide.
\ Views available on this track are:\- \
- Genes \
- The gene annotations in this view are divided into three subtracks: \
- \
- GENCODE Basic set is a subset of the Comprehensive set. \ The selection criteria are described in the methods section. \
- GENCODE Comprehensive set contains all GENCODE coding and non-coding transcript annotations,\ including polymorphic pseudogenes. This includes both manual and\ automatic annotations. This is a super-set of the Basic set. \
- GENCODE Pseudogenes include all annotations except polymorphic pseudogenes. \
- \
- PolyA \
- \
- GENCODE PolyA contains polyA signals and sites manually annotated on\ the genome based on transcribed evidence (ESTs and cDNAs) of 3' end of\ transcripts containing at least 3 A's not matching the genome. \
\ Maximum number of transcripts to display\ is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks.\ Starting with the GENCODE human V42 and mouse VM31 releases, \ transcripts are assigned rank within the gene. The ranks may be used to filter the number of transcripts\ displayed in a principled manner. Transcript ranking is not available in the lift37 releases.\ See Methods for details of rank assignment.\
\ \Filtering is available for the items in the GENCODE Basic, Comprehensive and Pseudogene tracks\ using the following criteria:
\- \
- Transcript class: filter by the basic biological function of a transcript\
annotation\
- \
- All - don't filter by transcript class \
- coding - display protein coding transcripts, including polymorphic pseudogenes \
- nonCoding - display non-protein coding transcripts \
- pseudo - display pseudogene transcript annotations \
- problem - display problem transcripts (Biotypes of retained_intron, TEC, or disrupted_domain)\
\
\
- Transcript Annotation Method: filter by the method used to create the annotation\
- \
- All - don't filter by transcript class \
- manual - display manually created annotations, including those that are \ also created automatically \
- automatic - display automatically created annotations, including those that are \ also created manually \
- manual_only - display manually created annotations that were\ not annotated by the automatic method \
- automatic_only - display automatically created annotations that were\ not annotated by the manual method \
\
- Transcript Biotype: filter transcripts by\ Biotype \
- Support Level: filter transcripts by transcription support level \
Coloring for the gene annotations is based on the annotation type:
\- \
- coding \
- non-coding \
- pseudogene \
- problem\
- all polyA annotations\
Methods
\ \\ The GENCODE project aims to annotate all evidence-based gene features on the \ human and mouse reference sequence with high accuracy by integrating \ computational approaches (including comparative methods), manual\ annotation and targeted experimental verification. This goal includes identifying \ all protein-coding loci with associated alternative variants, non-coding\ loci which have transcript evidence, and pseudogenes. \ For a detailed description of the methods and references used, see\ Harrow et al. (2006).\
\ \\ GENCODE Basic Set selection:\ The GENCODE Basic Set is intended to provide a simplified subset of\ the GENCODE transcript annotations that will be useful to the majority of\ users. The goal was to have a high-quality basic set that also covered all loci. \ Selection of GENCODE annotations for inclusion in the basic set\ was determined independently for the coding and non-coding transcripts at each\ gene locus.\
\- \
- Criteria for selection of coding transcripts (including polymorphic pseudogenes) at a given\
locus:\
- \
- All full-length coding transcripts (except problem transcripts or transcripts that are\ nonsense-mediated decay) were included in the basic set. \
- If there were no transcripts meeting the above criteria, then the partial coding\ transcript with the largest CDS was included in the basic set (excluding problem transcripts). \
\
- Criteria for selection of non-coding transcripts at a given locus:\
- \
- All full-length non-coding transcripts (except problem transcripts)\ with a well characterized Biotype (see below) were included in the\ basic set. \
- If there were no transcripts meeting the above criteria, then the largest non-coding\ transcript was included in the basic set (excluding problem transcripts). \
\
- If no transcripts were included by either of the above criteria, the longest\ problem transcript is included.\ \
\ Non-coding transcript categorization: \ Non-coding transcripts are categorized using\ their biotype\ and the following criteria:\
\- \
- well characterized: antisense, Mt_rRNA, Mt_tRNA, miRNA, rRNA, snRNA, snoRNA \
- poorly characterized: 3prime_overlapping_ncrna, lincRNA, misc_RNA, non_coding, processed_transcript, sense_intronic, sense_overlapping \
Transcript ranking:\ Within each gene, transcripts have been ranked according to the \ following criteria. The ranking approach is preliminary and will\ change is future releases.\
\ \- \
- Protein_coding genes\
- \
- MANE or Ensembl canonical
\ -1st: MANE Select / Ensembl canonical
\ -2nd: MANE Plus Clinical
\ - Coding biotypes
\ -1st: protein_coding and protein_coding_LoF
\ -2nd: NMDs and NSDs
\ -3rd: retained intron and protein_coding_CDS_not_defined
\ - Completeness
\ -1st: full length
\ -2nd: CDS start/end not found
\ - CARS score (only for coding transcripts)
\ - Transcript genomic span and length (only for non-coding transcripts)
\
- MANE or Ensembl canonical
- Non-coding genes\
- \
- Transcript biotype
\ -1st: transcript biotype identical to gene biotype\ - Ensembl canonical\
- GENCODE basic\
- Transcript genomic span\
- Transcript length\
- Transcript biotype
\ Transcription Support Level (TSL):\ It is important that users understand how to assess transcript annotations\ that they see in GENCODE. While some transcript models have a high level of\ support through the full length of their exon structure, there are also\ transcripts that are poorly supported and that should be considered\ speculative. The Transcription Support Level (TSL) is a method to highlight the\ well-supported and poorly-supported transcript models for users. The method\ relies on the primary data that can support full-length transcript\ structure: mRNA and EST alignments supplied by UCSC and Ensembl.
\ \The mRNA and EST alignments are compared to the GENCODE transcripts and the\ transcripts are scored according to how well the alignment matches over its\ full length. \ The GENCODE TSL provides a consistent method of evaluating the\ level of support that a GENCODE transcript annotation is\ actually expressed in mouse. Mouse transcript sequences from the \ International Nucleotide\ Sequence Database Collaboration (GenBank, ENA, and DDBJ) are used as\ the evidence for this analysis.\ \ Exonerate RNA alignments from Ensembl,\ BLAT RNA and EST alignments from the UCSC Genome Browser Database are used in\ the analysis. Erroneous transcripts and libraries identified in lists\ maintained by the Ensembl, UCSC, HAVANA and RefSeq groups are flagged as\ suspect. GENCODE annotations for protein-coding and non-protein-coding\ transcripts are compared with the evidence alignments.
\ \Annotations in the MHC region and other immunological genes are not\ evaluated, as automatic alignments tend to be very problematic. \ Methods for evaluating single-exon genes are still being developed and \ they are not included\ in the current analysis. Multi-exon GENCODE annotations are evaluated using\ the criteria that all introns are supported by an evidence alignment and the\ evidence alignment does not indicate that there are unannotated exons. Small\ insertions and deletions in evidence alignments are assumed to be due to\ polymorphisms and not considered as differing from the annotations. All\ intron boundaries must match exactly. The transcript start and end locations\ are allowed to differ.
\ \The following categories are assigned to each of the evaluated annotations:
\ \- \
- tsl1 - all splice junctions of the transcript are supported by\ at least one non-suspect mRNA\
- tsl2 - the best supporting mRNA is flagged as suspect or the support is from multiple ESTs \
- tsl3 - the only support is from a single EST \
- tsl4 - the best supporting EST is flagged as suspect \
- tsl5 - no single transcript supports the model structure \
- tslNA - the transcript was not analyzed for one of the following reasons:\
- \
- pseudogene annotation, including transcribed pseudogenes\
- immunoglobin gene transcript\
- T-cell receptor transcript\
- single-exon transcript (will be included in a future version)\
\
APPRIS\ is a system to annotate alternatively spliced transcripts based on a range of computational\ methods. It provides value to the annotations of the human, mouse, zebrafish, rat, and pig genomes.\ APPRIS has selected a single CDS variant for each gene as the 'PRINCIPAL' isoform. Principal\ isoforms are tagged with the numbers 1 to 5, with 1 being the most reliable.
\- \
- PRINCIPAL:1 - Transcript(s) expected to code for the main functional\ isoform based solely on the core modules in the APPRIS. \
- PRINCIPAL:2 - Where the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ database chooses two or more of the CDS variants as "candidates" to be the\ principal variant.\
- PRINCIPAL:3 - Where the APPRIS core modules are unable to choose a clear\ principal variant and more than one of the variants have distinct\ CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier\ as the principal variant. The lower the CCDS identifier, the earlier it\ was annotated.\
- PRINCIPAL:4 - Where the APPRIS core modules are unable to choose a clear\ principal CDS and there is more than one variant with distinct (but\ consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as\ the principal variant.\
- PRINCIPAL:5 - Where the APPRIS core modules are unable to choose a clear\ principal variant and none of the candidate variants are annotated by CCDS,\ APPRIS selects the longest of the candidate isoforms as the principal variant.\ For genes in which the APPRIS core modules are unable to choose a clear\ principal variant (approximately 25% of human protein coding genes), the\ "candidate" variants not chosen as principal are labeled in the following way:\
- ALTERNATIVE:1 - Candidate transcript(s) models that are conserved in at\ least three tested species.\
- ALTERNATIVE:2 - Candidate transcript(s) models that appear to be\ conserved in fewer than three tested species. Non-candidate transcripts are\ not tagged and are considered as "Minor" transcripts. Further information and\ additional web services can be found at the APPRIS website.\
Verification
\ \\ Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing.\ Those experiments can be found at GEO:
\- \
- GSE30619:[E-MTAB-612] - Batch I is based on annotation from July 2008 (without pseudogenes). \
- GSE25711:[E-MTAB-407] - Batch II is based on annotation from April 2009. \
- GSE30612:[E-MTAB-533] - Batch III is verifying RGASP models for c.elegans and human. \
- GSE34797:[E-MTAB-684] - Batch IV is based on chromosome 3, 4 and 5 annotations from GENCODE 4 (January 2010). \
- GSE34820:[E-MTAB-737] - Batch V is based on annotations from GENCODE 6 (November 2010). \
- GSE34821:[E-MTAB-831] - Batch VI is based on annotations from GENCODE 6 (November 2010) as well as transcript models predicted by the Ensembl Genebuild group based on the Illumina Human BodyMap 2.0 data. \
See Harrow et al. (2006) for information on verification\ techniques.\
\ \Release Notes
\\ GENCODE version 20 corresponds to Ensembl 76 and Vega 56.
\ \See also: The GENCODE Project\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 1 allButtonPair on\ compositeTrack on\ configurable off\ dragAndDrop subTracks\ fileSortOrder labVersion=Contents dccAccession=UCSC_Accession\ group genes\ longLabel Gene Annotations from GENCODE Version 20 (Ensembl 76)\ priority 34.185\ shortLabel GENCODE V20 (Ensembl 76)\ sortOrder name=+ view=+\ subGroup1 view View aGenes=Genes b2-way=2-way cPolya=PolyA\ subGroup2 name Name Basic=Basic Comprehensive=Comprehensive Pseudogenes=Pseudogenes yTwo-way=2-way_Pseudogenes zPolyA=PolyA\ superTrack wgEncodeGencodeSuper hide\ track wgEncodeGencodeV20\ type genePred\ visibility hide\ wgEncodeGencodeAnnotationRemark wgEncodeGencodeAnnotationRemarkV20\ wgEncodeGencodeAttrs wgEncodeGencodeAttrsV20\ wgEncodeGencodeExonSupport wgEncodeGencodeExonSupportV20\ wgEncodeGencodeGeneSource wgEncodeGencodeGeneSourceV20\ wgEncodeGencodePdb wgEncodeGencodePdbV20\ wgEncodeGencodePolyAFeature wgEncodeGencodePolyAFeatureV20\ wgEncodeGencodePubMed wgEncodeGencodePubMedV20\ wgEncodeGencodeRefSeq wgEncodeGencodeRefSeqV20\ wgEncodeGencodeTag wgEncodeGencodeTagV20\ wgEncodeGencodeTranscriptSource wgEncodeGencodeTranscriptSourceV20\ wgEncodeGencodeTranscriptSupport wgEncodeGencodeTranscriptSupportV20\ wgEncodeGencodeTranscriptionSupportLevel wgEncodeGencodeTranscriptionSupportLevelV20\ wgEncodeGencodeUniProt wgEncodeGencodeUniProtV20\ wgEncodeGencodeVersion 20\ wgEncodeGencodeV20ViewGenes Genes genePred Gene Annotations from GENCODE Version 20 (Ensembl 76) 3 34.185 0 0 0 127 127 127 0 0 0 genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ cdsDrawDefault genomic\\ codons\ configurable on\ filterBy attrs.transcriptClass:Transcript_Class=coding,nonCoding,pseudo,problem transcriptMethod:Transcript_Annotation_Method=manual,automatic,manual_only,automatic_only attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA\ gClass_coding 12,12,120\ gClass_nonCoding 0,153,0\ gClass_problem 254,0,0\ gClass_pseudo 255,51,255\ geneClasses coding nonCoding pseudo problem\ highlightBy supportLevel:Support_Level=tsl1,tsl2,tsl3,tsl4,tsl5,tslNA attrs.transcriptType:Transcript_Biotype=3prime_overlapping_ncrna,antisense,IG_C_gene,IG_C_pseudogene,IG_D_gene,IG_J_gene,IG_J_pseudogene,IG_V_gene,IG_V_pseudogene,lincRNA,miRNA,misc_RNA,Mt_rRNA,Mt_tRNA,nonsense_mediated_decay,non_stop_decay,polymorphic_pseudogene,processed_pseudogene,processed_transcript,protein_coding,pseudogene,retained_intron,rRNA,sense_intronic,sense_overlapping,snoRNA,snRNA,transcribed_processed_pseudogene,transcribed_unprocessed_pseudogene,translated_processed_pseudogene,TR_C_gene,TR_D_gene,TR_J_gene,TR_J_pseudogene,TR_V_gene,TR_V_pseudogene,unitary_pseudogene,unprocessed_pseudogene\ highlightColor 255,255,0\ idXref wgEncodeGencodeAttrsV20 transcriptId geneId\ itemClassClassColumn transcriptClass\ itemClassNameColumn transcriptId\ itemClassTbl wgEncodeGencodeAttrsV20\ longLabel Gene Annotations from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20\ shortLabel Genes\ track wgEncodeGencodeV20ViewGenes\ type genePred\ view aGenes\ visibility pack\ wgEncodeGencodeV20ViewPolya PolyA genePred Gene Annotations from GENCODE Version 20 (Ensembl 76) 0 34.185 0 0 0 127 127 127 0 0 0 genes 1 configurable off\ longLabel Gene Annotations from GENCODE Version 20 (Ensembl 76)\ parent wgEncodeGencodeV20\ shortLabel PolyA\ track wgEncodeGencodeV20ViewPolya\ type genePred\ view cPolya\ visibility hide\ encTfChipPkENCFF915LKZ A549 POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF915LKZ) 0 35 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF915LKZ)\ parent encTfChipPk off\ shortLabel A549 POLR2A 1\ subGroups cellType=A549 factor=POLR2A\ track encTfChipPkENCFF915LKZ\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_fwd AorticSmsToFgf2_03hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward 0 35 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_fwd AorticSmsToFgf2_03hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward 1 35 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k27acAllBlood Blood (all biosamples) bigWig Avg. H3K27ac level of 152 blood experiments (all biosamples) 2 35 254 75 173 254 165 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/bloodH3K27ac.bw\ color 254,75,173\ longLabel Avg. H3K27ac level of 152 blood experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 35\ shortLabel Blood (all biosamples)\ track wgEncodeReg4MarkH3k27acAllBlood\ type bigWig\ ENCFF278VYR_ENCFF971OSG_ENCFF238JTO_ENCFF264VOP ENCFF278VYR_ENCFF971OSG_ENCFF238JTO_ENCFF264VOP bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 35 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF278VYR_ENCFF971OSG_ENCFF238JTO_ENCFF264VOP.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 89\ shortLabel ENCFF278VYR_ENCFF971OSG_ENCFF238JTO_ENCFF264VOP\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO153NUY dataType=typeCcres\ track ENCFF278VYR_ENCFF971OSG_ENCFF238JTO_ENCFF264VOP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF792SYD ENCSR000AAR + strand bigWig Tracheal epithelial cell male adult (21 years) and male adult (68 years) + strand total RNA-seq signal 2 35 221 126 107 238 190 181 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/efef5800-c987-4cd7-b907-9de92fb5751c/ENCFF792SYD.bigWig\ color 221,126,107\ longLabel Tracheal epithelial cell male adult (21 years) and male adult (68 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAR + strand\ track wgEncodeReg4RnaSeq_ENCFF792SYD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF577LEK ENCSR000ANK Signal bigWig Skeletal muscle myoblast male adult 22 years H3K4me3 signal 2 35 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/d5d96a4b-8d25-4fc1-a0e6-51a6f128ceab/ENCFF577LEK.bigWig\ color 255,0,0\ longLabel Skeletal muscle myoblast male adult 22 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANK Signal\ track wgEncodeReg4Epigenetics_ENCFF577LEK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF905HFL ENCSR000AQC Peak bigBed 5 H1 RBBP5 peaks 4 35 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/c2a678b5-a664-471c-96a4-4d5c22ff061b/ENCFF905HFL.bigBed\ labelFields none\ longLabel H1 RBBP5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF905HFL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4MarkCtcfAllEye Eye (all biosamples) bigWig Avg. CTCF level of 2 eye experiments (all biosamples) 0 35 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/eyeCTCF.bw\ color 163,127,144\ longLabel Avg. CTCF level of 2 eye experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 35\ shortLabel Eye (all biosamples)\ track wgEncodeReg4MarkCtcfAllEye\ type bigWig\ chainHprcGCA_018472565v1 HG00673.mat chain GCA_018472565.1 HG00673.mat HG00673.pri.mat.f1_v2 (May 2021 GCA_018472565.1_HG00673.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 35 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00673.mat HG00673.pri.mat.f1_v2 (May 2021 GCA_018472565.1_HG00673.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472565.1\ parent hprcChainNetViewchain off\ priority 78\ shortLabel HG00673.mat\ subGroups view=chain sample=s078 population=eas subpop=chs hap=mat\ track chainHprcGCA_018472565v1\ type chain GCA_018472565.1\ wgEncodeRegDnaseUwHmfPeak HMF Pk narrowPeak HMF mammary fibroblast DNaseI Peaks from ENCODE 1 35 212 255 85 233 255 170 1 0 0 regulation 1 color 212,255,85\ longLabel HMF mammary fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMF Pk\ subGroups view=a_Peaks cellType=HMF treatment=n_a tissue=breast cancer=unknown\ track wgEncodeRegDnaseUwHmfPeak\ wgEncodeRegDnaseUwHmfWig HMF Sg bigWig 0 12347.6 HMF mammary fibroblast DNaseI Signal from ENCODE 0 35 212 255 85 233 255 170 0 0 0 regulation 1 color 212,255,85\ longLabel HMF mammary fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.28722\ shortLabel HMF Sg\ subGroups cellType=HMF treatment=n_a tissue=breast cancer=unknown\ table wgEncodeRegDnaseUwHmfSignal\ track wgEncodeRegDnaseUwHmfWig\ type bigWig 0 12347.6\ gtexCovKidneyMedulla Kidney Medulla bigWig Kidney Medulla 0 35 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-1626-SM-EZ6KW.Kidney_Medulla.RNAseq.bw\ color 205,183,158\ longLabel Kidney Medulla\ parent gtexCov\ shortLabel Kidney Medulla\ track gtexCovKidneyMedulla\ wgEncodeReg4TxnMouthPlus Mouth + bigWig Avg. + strand total RNA-seq level of 1 mouth experiments (tissues and primary cells only) 0 35 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/mouthPlus.bw\ color 130,141,158\ longLabel Avg. + strand total RNA-seq level of 1 mouth experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 35\ shortLabel Mouth +\ track wgEncodeReg4TxnMouthPlus\ type bigWig\ skelMusc429 Skeletal - Muscle - Z00000429 bigWig Methylation Atlas: Skeletal - Muscle - Z00000429 2 35 139 0 0 197 127 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/skelMusc429.bw\ color 139,0,0\ longLabel Methylation Atlas: Skeletal - Muscle - Z00000429\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 35\ shortLabel Skeletal - Muscle - Z00000429\ subGroups cellType=Skeletal-Musc dataType=Replicate\ track skelMusc429\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4DnaseAllSpinalCord Spinal cord (all biosamples) bigWig Avg. DNase level of 7 spinal cord experiments (all biosamples) 0 35 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spinalCordDNase.bw\ color 130,141,158\ longLabel Avg. DNase level of 7 spinal cord experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 35\ shortLabel Spinal cord (all biosamples)\ track wgEncodeReg4DnaseAllSpinalCord\ type bigWig\ wgEncodeReg4MarkH3k4me3AllVagina Vagina (all biosamples) bigWig Avg. H3K4me3 level of 2 vagina experiments (all biosamples) 0 35 255 101 174 255 178 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/vaginaH3K4me3.bw\ color 255,101,174\ longLabel Avg. H3K4me3 level of 2 vagina experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 35\ shortLabel Vagina (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllVagina\ type bigWig\ encTfChipPkENCFF664KTN A549 POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF664KTN) 0 36 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in A549 from ENCODE 3 (ENCFF664KTN)\ parent encTfChipPk off\ shortLabel A549 POLR2A 2\ subGroups cellType=A549 factor=POLR2A\ track encTfChipPkENCFF664KTN\ adipocytesMerged Adipocytes Merged bigWig Methylation Atlas: Adipocytes Merged Samples 2 36 210 180 140 232 217 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/adipocytesMerged.bw\ color 210,180,140\ longLabel Methylation Atlas: Adipocytes Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 36\ shortLabel Adipocytes Merged\ subGroups cellType=Adipocytes dataType=Merged\ track adipocytesMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_rev AorticSmsToFgf2_03hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse 0 36 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_rev AorticSmsToFgf2_03hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse 1 36 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep2%20%28LK20%29.CNhs13364.12746-136A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep2 (LK20)_CNhs13364_12746-136A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12746-136A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep2LK20_CNhs13364_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12746-136A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k4me3AllBlood Blood (all biosamples) bigWig Avg. H3K4me3 level of 163 blood experiments (all biosamples) 0 36 254 75 173 254 165 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/bloodH3K4me3.bw\ color 254,75,173\ longLabel Avg. H3K4me3 level of 163 blood experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 36\ shortLabel Blood (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllBlood\ type bigWig\ wgEncodeReg4MarkH3k27acAllBoneMarrow Bone marrow (all biosamples) bigWig Avg. H3K27ac level of 13 bone marrow experiments (all biosamples) 2 36 184 120 120 219 187 187 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneMarrowH3K27ac.bw\ color 184,120,120\ longLabel Avg. H3K27ac level of 13 bone marrow experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 36\ shortLabel Bone marrow (all biosamples)\ track wgEncodeReg4MarkH3k27acAllBoneMarrow\ type bigWig\ ENCFF767BTZ_ENCFF319HQY_ENCFF435BRK_ENCFF891CZD ENCFF767BTZ_ENCFF319HQY_ENCFF435BRK_ENCFF891CZD bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (1) cCREs 4 36 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF767BTZ_ENCFF319HQY_ENCFF435BRK_ENCFF891CZD.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 76\ shortLabel ENCFF767BTZ_ENCFF319HQY_ENCFF435BRK_ENCFF891CZD\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO201EUI dataType=typeCcres\ track ENCFF767BTZ_ENCFF319HQY_ENCFF435BRK_ENCFF891CZD\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF132WII ENCSR000AAR - strand bigWig Tracheal epithelial cell male adult (21 years) and male adult (68 years) - strand total RNA-seq signal 2 36 221 126 107 238 190 181 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/a36626b6-0c4e-49a3-8571-69b03fb6d2ca/ENCFF132WII.bigWig\ color 221,126,107\ longLabel Tracheal epithelial cell male adult (21 years) and male adult (68 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAR - strand\ track wgEncodeReg4RnaSeq_ENCFF132WII\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF356FDN ENCSR000ANO Peak bigBed 5 Fibroblast of lung female child 11 years and male adult 45 years CTCF peak 4 36 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/5a8b19cf-4c40-4fbb-a42e-0c5e1f4ba631/ENCFF356FDN.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of lung female child 11 years and male adult 45 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANO Peak\ track wgEncodeReg4Epigenetics_ENCFF356FDN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF841AUM ENCSR000AQC Signal bigWig H1 RBBP5 ENCSR000AQC signal 2 36 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/90a38e2c-ab7a-42e0-91a2-790cc2ce3309/ENCFF841AUM.bigWig\ color 118,158,101\ longLabel H1 RBBP5 ENCSR000AQC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQC Signal\ track wgEncodeReg4TfChip_ENCFF841AUM\ type bigWig\ visibility full\ wgEncodeReg4MarkCtcfAllHeart Heart (all biosamples) bigWig Avg. CTCF level of 25 heart experiments (all biosamples) 0 36 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/heartCTCF.bw\ color 116,50,165\ longLabel Avg. CTCF level of 25 heart experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 36\ shortLabel Heart (all biosamples)\ track wgEncodeReg4MarkCtcfAllHeart\ type bigWig\ netHprcGCA_018472565v1 HG00673.mat netAlign GCA_018472565.1 chainHprcGCA_018472565v1 HG00673.mat HG00673.pri.mat.f1_v2 (May 2021 GCA_018472565.1_HG00673.pri.mat.f1_v2) HPRC project computed Chain Nets 1 36 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00673.mat HG00673.pri.mat.f1_v2 (May 2021 GCA_018472565.1_HG00673.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472565.1\ parent hprcChainNetViewnet off\ priority 78\ shortLabel HG00673.mat\ subGroups view=net sample=s078 population=eas subpop=chs hap=mat\ track netHprcGCA_018472565v1\ type netAlign GCA_018472565.1 chainHprcGCA_018472565v1\ wgEncodeRegDnaseUwHgfPeak HGF Pk narrowPeak HGF gingival fibroblast DNaseI Peaks from ENCODE 1 36 204 255 85 229 255 170 1 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HGF Pk\ subGroups view=a_Peaks cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHgfPeak\ wgEncodeRegDnaseUwHgfWig HGF Sg bigWig 0 3410.39 HGF gingival fibroblast DNaseI Signal from ENCODE 0 36 204 255 85 229 255 170 0 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.29794\ shortLabel HGF Sg\ subGroups cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ table wgEncodeRegDnaseUwHgfSignal\ track wgEncodeRegDnaseUwHgfWig\ type bigWig 0 3410.39\ gtexCovLiver Liver bigWig Liver 0 36 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-0426-SM-4VBRO.Liver.RNAseq.bw\ color 205,183,158\ longLabel Liver\ parent gtexCov\ shortLabel Liver\ track gtexCovLiver\ wgEncodeReg4TxnMouthMinus Mouth - bigWig Avg. - strand total RNA-seq level of 1 mouth experiments (tissues and primary cells only) 0 36 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/mouthMinus.bw\ color 130,141,158\ longLabel Avg. - strand total RNA-seq level of 1 mouth experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 36\ shortLabel Mouth -\ track wgEncodeReg4TxnMouthMinus\ type bigWig\ wgEncodeReg4DnaseAllSpleen Spleen (all biosamples) bigWig Avg. DNase level of 5 spleen experiments (all biosamples) 0 36 136 157 97 195 206 176 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spleenDNase.bw\ color 136,157,97\ longLabel Avg. DNase level of 5 spleen experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 36\ shortLabel Spleen (all biosamples)\ track wgEncodeReg4DnaseAllSpleen\ type bigWig\ encTfChipPkENCFF897QCA A549 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in A549 from ENCODE 3 (ENCFF897QCA) 0 37 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in A549 from ENCODE 3 (ENCFF897QCA)\ parent encTfChipPk off\ shortLabel A549 RAD21\ subGroups cellType=A549 factor=RAD21\ track encTfChipPkENCFF897QCA\ adipo0T5 Adipocytes - Z000000T5 bigWig Methylation Atlas: Adipocytes - Z000000T5 2 37 210 180 140 232 217 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/adipo0T5.bw\ color 210,180,140\ longLabel Methylation Atlas: Adipocytes - Z000000T5\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 37\ shortLabel Adipocytes - Z000000T5\ subGroups cellType=Adipocytes dataType=Replicate\ track adipo0T5\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_fwd AorticSmsToFgf2_03hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward 0 37 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_fwd AorticSmsToFgf2_03hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward 1 37 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k4me3AllBoneMarrow Bone marrow (all biosamples) bigWig Avg. H3K4me3 level of 18 bone marrow experiments (all biosamples) 0 37 184 120 120 219 187 187 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneMarrowH3K4me3.bw\ color 184,120,120\ longLabel Avg. H3K4me3 level of 18 bone marrow experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 37\ shortLabel Bone marrow (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllBoneMarrow\ type bigWig\ wgEncodeReg4MarkH3k27acAllBrain Brain (all biosamples) bigWig Avg. H3K27ac level of 87 brain experiments (all biosamples) 2 37 155 155 18 205 205 136 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/brainH3K27ac.bw\ color 155,155,18\ longLabel Avg. H3K27ac level of 87 brain experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 37\ shortLabel Brain (all biosamples)\ track wgEncodeReg4MarkH3k27acAllBrain\ type bigWig\ ENCFF636BNY_ENCFF732JQY_ENCFF658QWN_ENCFF961RFY ENCFF636BNY_ENCFF732JQY_ENCFF658QWN_ENCFF961RFY bigBed 9 + 5 Middle frontal area 46, male adult (87 years): (1) cCREs 4 37 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF636BNY_ENCFF732JQY_ENCFF658QWN_ENCFF961RFY.bb\ longLabel Middle frontal area 46, male adult (87 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 114\ shortLabel ENCFF636BNY_ENCFF732JQY_ENCFF658QWN_ENCFF961RFY\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__87_years_ biosampleType=tissue donor=ENCDO203ASI dataType=typeCcres\ track ENCFF636BNY_ENCFF732JQY_ENCFF658QWN_ENCFF961RFY\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF980NBI ENCSR000AAS + strand bigWig Smooth muscle cell of trachea male adult (28 years) and male adult (56 years) + strand total RNA-seq signal 2 37 194 123 160 224 189 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/05658314-be7d-423f-ae70-01a081eaabb0/ENCFF980NBI.bigWig\ color 194,123,160\ longLabel Smooth muscle cell of trachea male adult (28 years) and male adult (56 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAS + strand\ track wgEncodeReg4RnaSeq_ENCFF980NBI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF616VTY ENCSR000ANO Signal bigWig Fibroblast of lung female child 11 years and male adult 45 years CTCF signal 2 37 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/34341810-c8ad-462b-9e8c-17dc4eeef60e/ENCFF616VTY.bigWig\ color 0,176,240\ longLabel Fibroblast of lung female child 11 years and male adult 45 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANO Signal\ track wgEncodeReg4Epigenetics_ENCFF616VTY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF118VJV ENCSR000AQD Peak bigBed 5 K562 CHD1 peaks 4 37 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/18/671ec97f-48da-487c-9fef-407b94a27487/ENCFF118VJV.bigBed\ labelFields none\ longLabel K562 CHD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF118VJV\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018472605v1 HG00621.mat chain GCA_018472605.1 HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 37 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472605.1\ parent hprcChainNetViewchain off\ priority 82\ shortLabel HG00621.mat\ subGroups view=chain sample=s082 population=eas subpop=chs hap=mat\ track chainHprcGCA_018472605v1\ type chain GCA_018472605.1\ wgEncodeReg4MarkCtcfAllKidney Kidney (all biosamples) bigWig Avg. CTCF level of 8 kidney experiments (all biosamples) 0 37 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/kidneyCTCF.bw\ color 92,161,153\ longLabel Avg. CTCF level of 8 kidney experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 37\ shortLabel Kidney (all biosamples)\ track wgEncodeReg4MarkCtcfAllKidney\ type bigWig\ gtexCovLung Lung bigWig Lung 0 37 154 205 50 204 230 152 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5V5-0826-SM-4VBQD.Lung.RNAseq.bw\ color 154,205,50\ longLabel Lung\ parent gtexCov\ shortLabel Lung\ track gtexCovLung\ wgEncodeReg4TxnMusclePlus Muscle + bigWig Avg. + strand total RNA-seq level of 19 muscle experiments (tissues and primary cells only) 0 37 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpMusclePlus.bw\ color 137,135,170\ longLabel Avg. + strand total RNA-seq level of 19 muscle experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn\ priority 37\ shortLabel Muscle +\ track wgEncodeReg4TxnMusclePlus\ type bigWig\ wgEncodeRegDnaseUwNhdfneoPeak NHDF-neo Pk narrowPeak NHDF-neo dermal fibroblast, neonate DNaseI Peaks from ENCODE 1 37 198 255 85 226 255 170 1 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NHDF-neo Pk\ subGroups view=a_Peaks cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfneoPeak\ wgEncodeRegDnaseUwNhdfneoWig NHDF-neo Sg bigWig 0 13455.2 NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE 0 37 198 255 85 226 255 170 0 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.3069\ shortLabel NHDF-neo Sg\ subGroups cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwNhdfneoSignal\ track wgEncodeRegDnaseUwNhdfneoWig\ type bigWig 0 13455.2\ wgEncodeReg4DnaseAllStomach Stomach (all biosamples) bigWig Avg. DNase level of 21 stomach experiments (all biosamples) 0 37 145 144 99 200 199 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/stomachDNase.bw\ color 145,144,99\ longLabel Avg. DNase level of 21 stomach experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 37\ shortLabel Stomach (all biosamples)\ track wgEncodeReg4DnaseAllStomach\ type bigWig\ encTfChipPkENCFF993WZP A549 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in A549 from ENCODE 3 (ENCFF993WZP) 0 38 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in A549 from ENCODE 3 (ENCFF993WZP)\ parent encTfChipPk off\ shortLabel A549 RCOR1\ subGroups cellType=A549 factor=RCOR1\ track encTfChipPkENCFF993WZP\ adipo0T7 Adipocytes - Z000000T7 bigWig Methylation Atlas: Adipocytes - Z000000T7 2 38 210 180 140 232 217 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/adipo0T7.bw\ color 210,180,140\ longLabel Methylation Atlas: Adipocytes - Z000000T7\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 38\ shortLabel Adipocytes - Z000000T7\ subGroups cellType=Adipocytes dataType=Replicate\ track adipo0T7\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_rev AorticSmsToFgf2_03hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse 0 38 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_03hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_rev AorticSmsToFgf2_03hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse 1 38 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2003hr%2c%20biol_rep3%20%28LK21%29.CNhs13573.12844-137B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 03hr, biol_rep3 (LK21)_CNhs13573_12844-137B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12844-137B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_03hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF203hrBiolRep3LK21_CNhs13573_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12844-137B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k4me3AllBrain Brain (all biosamples) bigWig Avg. H3K4me3 level of 102 brain experiments (all biosamples) 0 38 155 155 18 205 205 136 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/brainH3K4me3.bw\ color 155,155,18\ longLabel Avg. H3K4me3 level of 102 brain experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 38\ shortLabel Brain (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllBrain\ type bigWig\ wgEncodeReg4MarkH3k27acAllBreast Breast (all biosamples) bigWig Avg. H3K27ac level of 7 breast experiments (all biosamples) 2 38 65 171 173 160 213 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/breastH3K27ac.bw\ color 65,171,173\ longLabel Avg. H3K27ac level of 7 breast experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 38\ shortLabel Breast (all biosamples)\ track wgEncodeReg4MarkH3k27acAllBreast\ type bigWig\ ENCFF715WQG_ENCFF871ZNR_ENCFF694XDN_ENCFF161XMB ENCFF715WQG_ENCFF871ZNR_ENCFF694XDN_ENCFF161XMB bigBed 9 + 5 Middle frontal area 46, female adult (90 or above years): (1) cCREs 4 38 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF715WQG_ENCFF871ZNR_ENCFF694XDN_ENCFF161XMB.bb\ longLabel Middle frontal area 46, female adult (90 or above years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 104\ shortLabel ENCFF715WQG_ENCFF871ZNR_ENCFF694XDN_ENCFF161XMB\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO218FFZ dataType=typeCcres\ track ENCFF715WQG_ENCFF871ZNR_ENCFF694XDN_ENCFF161XMB\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF228UEL ENCSR000AAS - strand bigWig Smooth muscle cell of trachea male adult (28 years) and male adult (56 years) - strand total RNA-seq signal 2 38 194 123 160 224 189 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/570e6d46-d39a-4cdb-9b21-ada3063f3fe3/ENCFF228UEL.bigWig\ color 194,123,160\ longLabel Smooth muscle cell of trachea male adult (28 years) and male adult (56 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAS - strand\ track wgEncodeReg4RnaSeq_ENCFF228UEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF383SZU ENCSR000ANP Peak bigBed 5 H1 H3K27ac peak 4 38 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/cc6ea3a9-12c2-4d5e-b580-533ef758fb35/ENCFF383SZU.bigBed\ color 181,145,0\ longLabel H1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANP Peak\ track wgEncodeReg4Epigenetics_ENCFF383SZU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF506RWL ENCSR000AQD Signal bigWig K562 CHD1 ENCSR000AQD signal 2 38 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/2215b618-5100-4409-bab6-c8a8bfa4bcfe/ENCFF506RWL.bigWig\ color 254,75,173\ longLabel K562 CHD1 ENCSR000AQD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQD Signal\ track wgEncodeReg4TfChip_ENCFF506RWL\ type bigWig\ visibility full\ wgEncodeRegDnaseUwHaepicPeak HAEpiC Pk narrowPeak HAEpiC amniotic epithelium (AEC) DNaseI Peaks from ENCODE 1 38 189 255 85 222 255 170 1 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HAEpiC Pk\ subGroups view=a_Peaks cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ track wgEncodeRegDnaseUwHaepicPeak\ wgEncodeRegDnaseUwHaepicWig HAEpiC Sg bigWig 0 10858.1 HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE 0 38 189 255 85 222 255 170 0 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.32226\ shortLabel HAEpiC Sg\ subGroups cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ table wgEncodeRegDnaseUwHaepicSignal\ track wgEncodeRegDnaseUwHaepicWig\ type bigWig 0 10858.1\ netHprcGCA_018472605v1 HG00621.mat netAlign GCA_018472605.1 chainHprcGCA_018472605v1 HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chain Nets 1 38 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00621.mat HG00621.pri.mat.f1_v2 (May 2021 GCA_018472605.1_HG00621.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472605.1\ parent hprcChainNetViewnet off\ priority 82\ shortLabel HG00621.mat\ subGroups view=net sample=s082 population=eas subpop=chs hap=mat\ track netHprcGCA_018472605v1\ type netAlign GCA_018472605.1 chainHprcGCA_018472605v1\ wgEncodeReg4MarkCtcfAllLargeIntestine Large intestine (all biosamples) bigWig Avg. CTCF level of 11 large intestine experiments (all biosamples) 0 38 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/largeIntestineCTCF.bw\ color 86,86,36\ longLabel Avg. CTCF level of 11 large intestine experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 38\ shortLabel Large intestine (all biosamples)\ track wgEncodeReg4MarkCtcfAllLargeIntestine\ type bigWig\ gtexCovMinorSalivaryGland Minor Saliv Gland bigWig Minor Salivary Gland 0 38 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-1826-SM-4VDT9.Minor_Salivary_Gland.RNAseq.bw\ color 205,183,158\ longLabel Minor Salivary Gland\ parent gtexCov\ shortLabel Minor Saliv Gland\ track gtexCovMinorSalivaryGland\ wgEncodeReg4TxnMuscleMinus Muscle - bigWig Avg. - strand total RNA-seq level of 19 muscle experiments (tissues and primary cells only) 0 38 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpMuscleMinus.bw\ color 137,135,170\ longLabel Avg. - strand total RNA-seq level of 19 muscle experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn\ priority 38\ shortLabel Muscle -\ track wgEncodeReg4TxnMuscleMinus\ type bigWig\ wgEncodeReg4DnaseAllThymus Thymus (all biosamples) bigWig Avg. DNase level of 9 thymus experiments (all biosamples) 0 38 142 124 195 198 189 225 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/thymusDNase.bw\ color 142,124,195\ longLabel Avg. DNase level of 9 thymus experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 38\ shortLabel Thymus (all biosamples)\ track wgEncodeReg4DnaseAllThymus\ type bigWig\ encTfChipPkENCFF107EWI A549 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF107EWI) 0 39 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF107EWI)\ parent encTfChipPk off\ shortLabel A549 REST 1\ subGroups cellType=A549 factor=REST\ track encTfChipPkENCFF107EWI\ adipo0T9 Adipocytes - Z000000T9 bigWig Methylation Atlas: Adipocytes - Z000000T9 2 39 210 180 140 232 217 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/adipo0T9.bw\ color 210,180,140\ longLabel Methylation Atlas: Adipocytes - Z000000T9\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 39\ shortLabel Adipocytes - Z000000T9\ subGroups cellType=Adipocytes dataType=Replicate\ track adipo0T9\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_fwd AorticSmsToFgf2_05hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward 0 39 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_fwd AorticSmsToFgf2_05hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward 1 39 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k4me3AllBreast Breast (all biosamples) bigWig Avg. H3K4me3 level of 13 breast experiments (all biosamples) 0 39 65 171 173 160 213 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/breastH3K4me3.bw\ color 65,171,173\ longLabel Avg. H3K4me3 level of 13 breast experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 39\ shortLabel Breast (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllBreast\ type bigWig\ wgEncodeReg4MarkH3k27acAllConnectiveTissue Connective tissue (all biosamples) bigWig Avg. H3K27ac level of 3 connective tissue experiments (all biosamples) 2 39 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/connectiveTissueH3K27ac.bw\ color 138,135,169\ longLabel Avg. H3K27ac level of 3 connective tissue experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 39\ shortLabel Connective tissue (all biosamples)\ track wgEncodeReg4MarkH3k27acAllConnectiveTissue\ type bigWig\ ENCFF604AYM_ENCFF298AQY_ENCFF014NIB_ENCFF203LSD ENCFF604AYM_ENCFF298AQY_ENCFF014NIB_ENCFF203LSD bigBed 9 + 5 Middle frontal area 46, female adult (78 years): (1) cCREs 4 39 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF604AYM_ENCFF298AQY_ENCFF014NIB_ENCFF203LSD.bb\ longLabel Middle frontal area 46, female adult (78 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 94\ shortLabel ENCFF604AYM_ENCFF298AQY_ENCFF014NIB_ENCFF203LSD\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__78_years_ biosampleType=tissue donor=ENCDO236YSH dataType=typeCcres\ track ENCFF604AYM_ENCFF298AQY_ENCFF014NIB_ENCFF203LSD\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF572FWT ENCSR000AAT + strand bigWig Epithelial cell of umbilical artery female newborn and male newborn + strand total RNA-seq signal 2 39 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/24c2298b-2776-4fa3-8953-38561b17b17f/ENCFF572FWT.bigWig\ color 255,37,41\ longLabel Epithelial cell of umbilical artery female newborn and male newborn + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAT + strand\ track wgEncodeReg4RnaSeq_ENCFF572FWT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF919FBG ENCSR000ANP Signal bigWig H1 H3K27ac signal 2 39 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/b55106ed-b1c1-44ec-98c1-0b4f6923c7ab/ENCFF919FBG.bigWig\ color 181,145,0\ longLabel H1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANP Signal\ track wgEncodeReg4Epigenetics_ENCFF919FBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF872AQB ENCSR000AQF Peak bigBed 5 K562 HDAC1 peaks 4 39 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/55abb86d-d164-498a-ad6d-386d5f163db0/ENCFF872AQB.bigBed\ labelFields none\ longLabel K562 HDAC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF872AQB\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018472575v1 HG00621.pat chain GCA_018472575.1 HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 39 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472575.1\ parent hprcChainNetViewchain off\ priority 79\ shortLabel HG00621.pat\ subGroups view=chain sample=s079 population=eas subpop=chs hap=pat\ track chainHprcGCA_018472575v1\ type chain GCA_018472575.1\ wgEncodeReg4MarkCtcfAllLiver Liver (all biosamples) bigWig Avg. CTCF level of 4 liver experiments (all biosamples) 0 39 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/liverCTCF.bw\ color 137,152,82\ longLabel Avg. CTCF level of 4 liver experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 39\ shortLabel Liver (all biosamples)\ track wgEncodeReg4MarkCtcfAllLiver\ type bigWig\ gtexCovMuscleSkeletal Muscle Skeletal bigWig Muscle Skeletal 0 39 122 103 238 188 179 246 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0626-SM-2HMIV.Muscle_Skeletal.RNAseq.bw\ color 122,103,238\ longLabel Muscle Skeletal\ parent gtexCov\ shortLabel Muscle Skeletal\ track gtexCovMuscleSkeletal\ wgEncodeReg4TxnNervePlus Nerve + bigWig Avg. + strand total RNA-seq level of 5 nerve experiments (tissues and primary cells only) 0 39 160 156 0 207 205 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/nervePlus.bw\ color 160,156,0\ longLabel Avg. + strand total RNA-seq level of 5 nerve experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 39\ shortLabel Nerve +\ track wgEncodeReg4TxnNervePlus\ type bigWig\ wgEncodeRegDnaseUwSkmcPeak SKMC Pk narrowPeak SKMC skeletal muscle cell DNaseI Peaks from ENCODE 1 39 182 255 85 218 255 170 1 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SKMC Pk\ subGroups view=a_Peaks cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwSkmcPeak\ wgEncodeRegDnaseUwSkmcWig SKMC Sg bigWig 0 2130.04 SKMC skeletal muscle cell DNaseI Signal from ENCODE 0 39 182 255 85 218 255 170 0 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.3337\ shortLabel SKMC Sg\ subGroups cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ table wgEncodeRegDnaseUwSkmcSignal\ track wgEncodeRegDnaseUwSkmcWig\ type bigWig 0 2130.04\ wgEncodeReg4DnaseAllThyroid Thyroid (all biosamples) bigWig Avg. DNase level of 4 thyroid experiments (all biosamples) 0 39 27 119 58 141 187 156 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/thyroidDNase.bw\ color 27,119,58\ longLabel Avg. DNase level of 4 thyroid experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 39\ shortLabel Thyroid (all biosamples)\ track wgEncodeReg4DnaseAllThyroid\ type bigWig\ encTfChipPkENCFF706DRE A549 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF706DRE) 0 40 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in A549 from ENCODE 3 (ENCFF706DRE)\ parent encTfChipPk off\ shortLabel A549 REST 2\ subGroups cellType=A549 factor=REST\ track encTfChipPkENCFF706DRE\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_rev AorticSmsToFgf2_05hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse 0 40 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_rev AorticSmsToFgf2_05hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse 1 40 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep1%20%28LK25%29.CNhs13347.12650-134H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep1 (LK25)_CNhs13347_12650-134H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12650-134H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep1LK25_CNhs13347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12650-134H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k4me3AllConnectiveTissue Connective tissue (all biosamples) bigWig Avg. H3K4me3 level of 5 connective tissue experiments (all biosamples) 0 40 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/connectiveTissueH3K4me3.bw\ color 138,135,169\ longLabel Avg. H3K4me3 level of 5 connective tissue experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 40\ shortLabel Connective tissue (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllConnectiveTissue\ type bigWig\ wgEncodeReg4MarkH3k27acAllEmbryo Embryo (all biosamples) bigWig Avg. H3K27ac level of 20 embryo experiments (all biosamples) 2 40 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/embryoH3K27ac.bw\ color 118,158,101\ longLabel Avg. H3K27ac level of 20 embryo experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 40\ shortLabel Embryo (all biosamples)\ track wgEncodeReg4MarkH3k27acAllEmbryo\ type bigWig\ ENCFF258AWM_ENCFF834IHE_ENCFF519CLG_ENCFF488PRF ENCFF258AWM_ENCFF834IHE_ENCFF519CLG_ENCFF488PRF bigBed 9 + 5 Middle frontal area 46, female adult (90 or above years): (1) cCREs 4 40 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF258AWM_ENCFF834IHE_ENCFF519CLG_ENCFF488PRF.bb\ longLabel Middle frontal area 46, female adult (90 or above years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 103\ shortLabel ENCFF258AWM_ENCFF834IHE_ENCFF519CLG_ENCFF488PRF\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO250PFZ dataType=typeCcres\ track ENCFF258AWM_ENCFF834IHE_ENCFF519CLG_ENCFF488PRF\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF296OUP ENCSR000AAT - strand bigWig Epithelial cell of umbilical artery female newborn and male newborn - strand total RNA-seq signal 2 40 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/b33d0bca-2305-4b87-b559-4fcd402229cd/ENCFF296OUP.bigWig\ color 255,37,41\ longLabel Epithelial cell of umbilical artery female newborn and male newborn - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAT - strand\ track wgEncodeReg4RnaSeq_ENCFF296OUP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF981UHL ENCSR000ANS Peak bigBed 5 Myotube originated from skeletal muscle myoblast CTCF peak 4 40 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/05e1cbdc-bdaa-44bd-b04c-8a4ce6b8a35b/ENCFF981UHL.bigBed\ color 0,176,240\ labelFields none\ longLabel Myotube originated from skeletal muscle myoblast CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANS Peak\ track wgEncodeReg4Epigenetics_ENCFF981UHL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF549WXX ENCSR000AQF Signal bigWig K562 HDAC1 ENCSR000AQF signal 2 40 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/10e038e2-bc40-4e35-a62e-de5bebf865b2/ENCFF549WXX.bigWig\ color 254,75,173\ longLabel K562 HDAC1 ENCSR000AQF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQF Signal\ track wgEncodeReg4TfChip_ENCFF549WXX\ type bigWig\ visibility full\ endothelMerged Endothelial Merged bigWig Methylation Atlas: Endothelial Merged Samples 2 40 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/endothelMerged.bw\ color 255,105,180\ longLabel Methylation Atlas: Endothelial Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 40\ shortLabel Endothelial Merged\ subGroups cellType=Endothel dataType=Merged\ track endothelMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwHbvsmcPeak HBVSMC Pk narrowPeak HBVSMC brain vascular smooth muscle DNaseI Peaks from ENCODE 1 40 176 255 85 215 255 170 1 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HBVSMC Pk\ subGroups view=a_Peaks cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbvsmcPeak\ wgEncodeRegDnaseUwHbvsmcWig HBVSMC Sg bigWig 0 3766.42 HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE 0 40 176 255 85 215 255 170 0 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.34687\ shortLabel HBVSMC Sg\ subGroups cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHbvsmcSignal\ track wgEncodeRegDnaseUwHbvsmcWig\ type bigWig 0 3766.42\ netHprcGCA_018472575v1 HG00621.pat netAlign GCA_018472575.1 chainHprcGCA_018472575v1 HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chain Nets 1 40 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00621.pat HG00621.alt.pat.f1_v2 (May 2021 GCA_018472575.1_HG00621.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472575.1\ parent hprcChainNetViewnet off\ priority 79\ shortLabel HG00621.pat\ subGroups view=net sample=s079 population=eas subpop=chs hap=pat\ track netHprcGCA_018472575v1\ type netAlign GCA_018472575.1 chainHprcGCA_018472575v1\ wgEncodeReg4MarkCtcfAllLung Lung (all biosamples) bigWig Avg. CTCF level of 20 lung experiments (all biosamples) 0 40 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/lungCTCF.bw\ color 130,163,45\ longLabel Avg. CTCF level of 20 lung experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 40\ shortLabel Lung (all biosamples)\ track wgEncodeReg4MarkCtcfAllLung\ type bigWig\ wgEncodeReg4TxnNerveMinus Nerve - bigWig Avg. - strand total RNA-seq level of 5 nerve experiments (tissues and primary cells only) 0 40 160 156 0 207 205 127 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/nerveMinus.bw\ color 160,156,0\ longLabel Avg. - strand total RNA-seq level of 5 nerve experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 40\ shortLabel Nerve -\ track wgEncodeReg4TxnNerveMinus\ type bigWig\ gtexCovNerveTibial Nerve Tibial bigWig Nerve Tibial 0 40 255 215 0 255 235 127 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-TML8-1626-SM-32QOO.Nerve_Tibial.RNAseq.bw\ color 255,215,0\ longLabel Nerve Tibial\ parent gtexCov\ shortLabel Nerve Tibial\ track gtexCovNerveTibial\ wgEncodeReg4DnaseAllUrinaryBladder Urinary bladder (all biosamples) bigWig DNase level of 1 urinary bladder experiment (all biosamples) 0 40 194 33 39 224 144 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/urinaryBladderDNase.bw\ color 194,33,39\ longLabel DNase level of 1 urinary bladder experiment (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 40\ shortLabel Urinary bladder (all biosamples)\ track wgEncodeReg4DnaseAllUrinaryBladder\ type bigWig\ encTfChipPkENCFF179WDI A549 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in A549 from ENCODE 3 (ENCFF179WDI) 0 41 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in A549 from ENCODE 3 (ENCFF179WDI)\ parent encTfChipPk off\ shortLabel A549 RFX5\ subGroups cellType=A549 factor=RFX5\ track encTfChipPkENCFF179WDI\ wgEncodeRegDnaseUwAg04449Peak AG04449 Pk narrowPeak AG04449 fetal skin fibroblast DNaseI Peaks from ENCODE 1 41 152 255 85 203 255 170 1 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG04449 Pk\ subGroups view=a_Peaks cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwAg04449Peak\ wgEncodeRegDnaseUwAg04449Wig AG04449 Sg bigWig 0 20132.8 AG04449 fetal skin fibroblast DNaseI Signal from ENCODE 0 41 152 255 85 203 255 170 0 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.36656\ shortLabel AG04449 Sg\ subGroups cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwAg04449Signal\ track wgEncodeRegDnaseUwAg04449Wig\ type bigWig 0 20132.8\ aortaEndoth422 Aorta - Endothel - Z00000422 bigWig Methylation Atlas: Aorta - Endothel - Z00000422 2 41 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/aortaEndoth422.bw\ color 255,105,180\ longLabel Methylation Atlas: Aorta - Endothel - Z00000422\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 41\ shortLabel Aorta - Endothel - Z00000422\ subGroups cellType=Endothel dataType=Replicate\ track aortaEndoth422\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_fwd AorticSmsToFgf2_05hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward 0 41 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_fwd AorticSmsToFgf2_05hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward 1 41 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k4me3AllEmbryo Embryo (all biosamples) bigWig Avg. H3K4me3 level of 23 embryo experiments (all biosamples) 0 41 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/embryoH3K4me3.bw\ color 118,158,101\ longLabel Avg. H3K4me3 level of 23 embryo experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 41\ shortLabel Embryo (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllEmbryo\ type bigWig\ ENCFF427FGG_ENCFF616FVZ_ENCFF962GLK_ENCFF417AGZ ENCFF427FGG_ENCFF616FVZ_ENCFF962GLK_ENCFF417AGZ bigBed 9 + 5 Middle frontal area 46, female adult (82 years): (1) cCREs 4 41 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF427FGG_ENCFF616FVZ_ENCFF962GLK_ENCFF417AGZ.bb\ longLabel Middle frontal area 46, female adult (82 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 96\ shortLabel ENCFF427FGG_ENCFF616FVZ_ENCFF962GLK_ENCFF417AGZ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__82_years_ biosampleType=tissue donor=ENCDO290OPS dataType=typeCcres\ track ENCFF427FGG_ENCFF616FVZ_ENCFF962GLK_ENCFF417AGZ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF368GDY ENCSR000AAU + strand bigWig Smooth muscle cell of the umbilical artery female newborn and male newborn + strand total RNA-seq signal 2 41 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/d5b9f451-54d6-47fc-9278-3a281ba4aaea/ENCFF368GDY.bigWig\ color 255,37,41\ longLabel Smooth muscle cell of the umbilical artery female newborn and male newborn + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAU + strand\ track wgEncodeReg4RnaSeq_ENCFF368GDY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF450CWJ ENCSR000ANS Signal bigWig Myotube originated from skeletal muscle myoblast CTCF signal 2 41 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/055c8082-2eb5-4e1f-865b-c6b60670716e/ENCFF450CWJ.bigWig\ color 0,176,240\ longLabel Myotube originated from skeletal muscle myoblast CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANS Signal\ track wgEncodeReg4Epigenetics_ENCFF450CWJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF889DON ENCSR000AQG Peak bigBed 5 K562 HDAC2 peaks 4 41 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d6d31426-32fa-465e-9d01-64f73fbd270c/ENCFF889DON.bigBed\ labelFields none\ longLabel K562 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF889DON\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4MarkH3k27acAllHeart Heart (all biosamples) bigWig Avg. H3K27ac level of 28 heart experiments (all biosamples) 2 41 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/heartH3K27ac.bw\ color 116,50,165\ longLabel Avg. H3K27ac level of 28 heart experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 41\ shortLabel Heart (all biosamples)\ track wgEncodeReg4MarkH3k27acAllHeart\ type bigWig\ chainHprcGCA_018472585v1 HG00673.pat chain GCA_018472585.1 HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 41 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472585.1\ parent hprcChainNetViewchain off\ priority 80\ shortLabel HG00673.pat\ subGroups view=chain sample=s080 population=eas subpop=chs hap=pat\ track chainHprcGCA_018472585v1\ type chain GCA_018472585.1\ wgEncodeReg4MarkCtcfAllMuscle Muscle (all biosamples) bigWig Avg. CTCF level of 18 muscle experiments (all biosamples) 0 41 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/muscleCTCF.bw\ color 137,135,170\ longLabel Avg. CTCF level of 18 muscle experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 41\ shortLabel Muscle (all biosamples)\ track wgEncodeReg4MarkCtcfAllMuscle\ type bigWig\ wgEncodeReg4TxnNosePlus Nose + bigWig Avg. + strand total RNA-seq level of 1 nose experiments (tissues and primary cells only) 0 41 181 131 79 218 193 167 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/nosePlus.bw\ color 181,131,79\ longLabel Avg. + strand total RNA-seq level of 1 nose experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 41\ shortLabel Nose +\ track wgEncodeReg4TxnNosePlus\ type bigWig\ gtexCovOvary Ovary bigWig Ovary 0 41 255 182 193 255 218 224 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZVT2-0326-SM-5E44G.Ovary.RNAseq.bw\ color 255,182,193\ longLabel Ovary\ parent gtexCov\ shortLabel Ovary\ track gtexCovOvary\ wgEncodeReg4DnaseAllVagina Vagina (all biosamples) bigWig Avg. DNase level of 2 vagina experiments (all biosamples) 0 41 255 101 174 255 178 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/vaginaDNase.bw\ color 255,101,174\ longLabel Avg. DNase level of 2 vagina experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 41\ shortLabel Vagina (all biosamples)\ track wgEncodeReg4DnaseAllVagina\ type bigWig\ encTfChipPkENCFF110EOX A549 RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in A549 from ENCODE 3 (ENCFF110EOX) 0 42 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in A549 from ENCODE 3 (ENCFF110EOX)\ parent encTfChipPk off\ shortLabel A549 RNF2\ subGroups cellType=A549 factor=RNF2\ track encTfChipPkENCFF110EOX\ wgEncodeRegDnaseUwAg04450Peak AG04450 Pk narrowPeak AG04450 fetal lung fibroblast DNaseI Peaks from ENCODE 1 42 144 255 85 199 255 170 1 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel AG04450 Pk\ subGroups view=a_Peaks cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwAg04450Peak\ wgEncodeRegDnaseUwAg04450Wig AG04450 Sg bigWig 0 18229.7 AG04450 fetal lung fibroblast DNaseI Signal from ENCODE 0 42 144 255 85 199 255 170 0 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.37094\ shortLabel AG04450 Sg\ subGroups cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwAg04450Signal\ track wgEncodeRegDnaseUwAg04450Wig\ type bigWig 0 18229.7\ aortaEndoth43G Aorta - Endothel - Z0000043G bigWig Methylation Atlas: Aorta - Endothel - Z0000043G 2 42 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/aortaEndoth43G.bw\ color 255,105,180\ longLabel Methylation Atlas: Aorta - Endothel - Z0000043G\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 42\ shortLabel Aorta - Endothel - Z0000043G\ subGroups cellType=Endothel dataType=Replicate\ track aortaEndoth43G\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_rev AorticSmsToFgf2_05hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse 0 42 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_rev AorticSmsToFgf2_05hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse 1 42 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep2%20%28LK26%29.CNhs13367.12748-136A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep2 (LK26)_CNhs13367_12748-136A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12748-136A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep2LK26_CNhs13367_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12748-136A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4DnaseAllBlood Blood (all biosamples) bigWig Avg. DNase level of 401 blood experiments (all biosamples) 0 42 254 75 173 254 165 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/bloodDNase.bw\ color 254,75,173\ longLabel Avg. DNase level of 401 blood experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 42\ shortLabel Blood (all biosamples)\ track wgEncodeReg4DnaseAllBlood\ type bigWig\ ENCFF732ABI_ENCFF127DBK_ENCFF794RDI_ENCFF888DOQ ENCFF732ABI_ENCFF127DBK_ENCFF794RDI_ENCFF888DOQ bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (1) cCREs 4 42 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF732ABI_ENCFF127DBK_ENCFF794RDI_ENCFF888DOQ.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 82\ shortLabel ENCFF732ABI_ENCFF127DBK_ENCFF794RDI_ENCFF888DOQ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__87_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO354SJE dataType=typeCcres\ track ENCFF732ABI_ENCFF127DBK_ENCFF794RDI_ENCFF888DOQ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF010WFY ENCSR000AAU - strand bigWig Smooth muscle cell of the umbilical artery female newborn and male newborn - strand total RNA-seq signal 2 42 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/4c980ecc-6934-47c5-a3f5-c80fe6c6c477/ENCFF010WFY.bigWig\ color 255,37,41\ longLabel Smooth muscle cell of the umbilical artery female newborn and male newborn - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAU - strand\ track wgEncodeReg4RnaSeq_ENCFF010WFY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF642LTS ENCSR000ANV Peak bigBed 5 Myotube originated from skeletal muscle myoblast H3K27ac peak 4 42 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/481379be-f17f-4c3e-93b9-af6a62b09553/ENCFF642LTS.bigBed\ color 181,145,0\ longLabel Myotube originated from skeletal muscle myoblast H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANV Peak\ track wgEncodeReg4Epigenetics_ENCFF642LTS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF065PDS ENCSR000AQG Signal bigWig K562 HDAC2 ENCSR000AQG signal 2 42 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d87dd485-20b8-4996-89e5-af5ea30548e3/ENCFF065PDS.bigWig\ color 254,75,173\ longLabel K562 HDAC2 ENCSR000AQG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQG Signal\ track wgEncodeReg4TfChip_ENCFF065PDS\ type bigWig\ visibility full\ wgEncodeReg4MarkH3k4me3AllEye Eye (all biosamples) bigWig Avg. H3K4me3 level of 2 eye experiments (all biosamples) 0 42 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/eyeH3K4me3.bw\ color 163,127,144\ longLabel Avg. H3K4me3 level of 2 eye experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 42\ shortLabel Eye (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllEye\ type bigWig\ netHprcGCA_018472585v1 HG00673.pat netAlign GCA_018472585.1 chainHprcGCA_018472585v1 HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chain Nets 1 42 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00673.pat HG00673.alt.pat.f1_v2 (May 2021 GCA_018472585.1_HG00673.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472585.1\ parent hprcChainNetViewnet off\ priority 80\ shortLabel HG00673.pat\ subGroups view=net sample=s080 population=eas subpop=chs hap=pat\ track netHprcGCA_018472585v1\ type netAlign GCA_018472585.1 chainHprcGCA_018472585v1\ wgEncodeReg4MarkH3k27acAllKidney Kidney (all biosamples) bigWig Avg. H3K27ac level of 7 kidney experiments (all biosamples) 2 42 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/kidneyH3K27ac.bw\ color 92,161,153\ longLabel Avg. H3K27ac level of 7 kidney experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 42\ shortLabel Kidney (all biosamples)\ track wgEncodeReg4MarkH3k27acAllKidney\ type bigWig\ wgEncodeReg4TxnNoseMinus Nose - bigWig Avg. - strand total RNA-seq level of 1 nose experiments (tissues and primary cells only) 0 42 181 131 79 218 193 167 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/noseMinus.bw\ color 181,131,79\ longLabel Avg. - strand total RNA-seq level of 1 nose experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 42\ shortLabel Nose -\ track wgEncodeReg4TxnNoseMinus\ type bigWig\ gtexCovPancreas Pancreas bigWig Pancreas 0 42 205 155 29 230 205 142 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1H1E6-0826-SM-9WG83.Pancreas.RNAseq.bw\ color 205,155,29\ longLabel Pancreas\ parent gtexCov\ shortLabel Pancreas\ track gtexCovPancreas\ wgEncodeReg4MarkCtcfAllPancreas Pancreas (all biosamples) bigWig Avg. CTCF level of 12 pancreas experiments (all biosamples) 0 42 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/pancreasCTCF.bw\ color 175,100,41\ longLabel Avg. CTCF level of 12 pancreas experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 42\ shortLabel Pancreas (all biosamples)\ track wgEncodeReg4MarkCtcfAllPancreas\ type bigWig\ encTfChipPkENCFF567BJI A549 SIN3A 1 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF567BJI) 0 43 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF567BJI)\ parent encTfChipPk off\ shortLabel A549 SIN3A 1\ subGroups cellType=A549 factor=SIN3A\ track encTfChipPkENCFF567BJI\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_fwd AorticSmsToFgf2_05hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward 0 43 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_fwd AorticSmsToFgf2_05hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward 1 43 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4DnaseAllBone Bone (all biosamples) bigWig Avg. DNase level of 4 bone experiments (all biosamples) 0 43 121 147 150 188 201 202 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneDNase.bw\ color 121,147,150\ longLabel Avg. DNase level of 4 bone experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 43\ shortLabel Bone (all biosamples)\ track wgEncodeReg4DnaseAllBone\ type bigWig\ ENCFF305XCA_ENCFF478CLR_ENCFF028IBW_ENCFF258OMT ENCFF305XCA_ENCFF478CLR_ENCFF028IBW_ENCFF258OMT bigBed 9 + 5 Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (1) cCREs 4 43 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF305XCA_ENCFF478CLR_ENCFF028IBW_ENCFF258OMT.bb\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 80\ shortLabel ENCFF305XCA_ENCFF478CLR_ENCFF028IBW_ENCFF258OMT\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO359XWR dataType=typeCcres\ track ENCFF305XCA_ENCFF478CLR_ENCFF028IBW_ENCFF258OMT\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF369BVA ENCSR000AAV + strand bigWig Uterine smooth muscle cell female adult (48 years) and female adult (50 years) + strand total RNA-seq signal 2 43 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/ac399383-9289-47dc-9fb6-136dfc1cd8f1/ENCFF369BVA.bigWig\ color 186,111,165\ longLabel Uterine smooth muscle cell female adult (48 years) and female adult (50 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAV + strand\ track wgEncodeReg4RnaSeq_ENCFF369BVA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF532FVC ENCSR000ANV Signal bigWig Myotube originated from skeletal muscle myoblast H3K27ac signal 2 43 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/a5188b2e-116b-4bbc-822a-ea5217e651dc/ENCFF532FVC.bigWig\ color 181,145,0\ longLabel Myotube originated from skeletal muscle myoblast H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANV Signal\ track wgEncodeReg4Epigenetics_ENCFF532FVC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF217UCA ENCSR000AQH Peak bigBed 5 K562 PHF8 peaks 4 43 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/3998a05e-2f3d-4f75-b391-1cc0a1767b42/ENCFF217UCA.bigBed\ labelFields none\ longLabel K562 PHF8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF217UCA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeRegDnaseUwHahPeak HA-h Pk narrowPeak HA-h hippocampal astrocyte DNaseI Peaks from ENCODE 1 43 122 255 85 188 255 170 1 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HA-h Pk\ subGroups view=a_Peaks cellType=HA-h treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHahPeak\ wgEncodeRegDnaseUwHahWig HA-h Sg bigWig 0 10262.5 HA-h hippocampal astrocyte DNaseI Signal from ENCODE 0 43 122 255 85 188 255 170 0 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.38256\ shortLabel HA-h Sg\ subGroups cellType=HA-h treatment=n_a tissue=brain cancer=normal\ table wgEncodeRegDnaseUwHahSignal\ track wgEncodeRegDnaseUwHahWig\ type bigWig 0 10262.5\ wgEncodeReg4MarkH3k4me3AllHeart Heart (all biosamples) bigWig Avg. H3K4me3 level of 31 heart experiments (all biosamples) 0 43 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/heartH3K4me3.bw\ color 116,50,165\ longLabel Avg. H3K4me3 level of 31 heart experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 43\ shortLabel Heart (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllHeart\ type bigWig\ chainHprcGCA_018472595v1 HG00438.pat chain GCA_018472595.1 HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 43 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472595.1\ parent hprcChainNetViewchain off\ priority 81\ shortLabel HG00438.pat\ subGroups view=chain sample=s081 population=eas subpop=chs hap=pat\ track chainHprcGCA_018472595v1\ type chain GCA_018472595.1\ kidneyGlomEndoth0Q5 Kidney Glomerular - Endothel - Z000000Q5 bigWig Methylation Atlas: Kidney Glomerular - Endothel - Z000000Q5 2 43 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomEndoth0Q5.bw\ color 255,105,180\ longLabel Methylation Atlas: Kidney Glomerular - Endothel - Z000000Q5\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 43\ shortLabel Kidney Glomerular - Endothel - Z000000Q5\ subGroups cellType=Endothel dataType=Replicate\ track kidneyGlomEndoth0Q5\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k27acAllLargeIntestine Large intestine (all biosamples) bigWig Avg. H3K27ac level of 36 large intestine experiments (all biosamples) 2 43 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/largeIntestineH3K27ac.bw\ color 86,86,36\ longLabel Avg. H3K27ac level of 36 large intestine experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 43\ shortLabel Large intestine (all biosamples)\ track wgEncodeReg4MarkH3k27acAllLargeIntestine\ type bigWig\ wgEncodeReg4TxnOvaryPlus Ovary + bigWig Avg. + strand total RNA-seq level of 7 ovary experiments (tissues and primary cells only) 0 43 161 126 151 208 190 203 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/ovaryPlus.bw\ color 161,126,151\ longLabel Avg. + strand total RNA-seq level of 7 ovary experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 43\ shortLabel Ovary +\ track wgEncodeReg4TxnOvaryPlus\ type bigWig\ gtexCovPituitary Pituitary bigWig Pituitary 0 43 180 238 180 217 246 217 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y111-2926-SM-4TT25.Pituitary.RNAseq.bw\ color 180,238,180\ longLabel Pituitary\ parent gtexCov\ shortLabel Pituitary\ track gtexCovPituitary\ wgEncodeReg4MarkCtcfAllProstate Prostate (all biosamples) bigWig Avg. CTCF level of 14 prostate experiments (all biosamples) 0 43 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/prostateCTCF.bw\ color 140,140,140\ longLabel Avg. CTCF level of 14 prostate experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 43\ shortLabel Prostate (all biosamples)\ track wgEncodeReg4MarkCtcfAllProstate\ type bigWig\ encTfChipPkENCFF708HTR A549 SIN3A 2 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF708HTR) 0 44 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in A549 from ENCODE 3 (ENCFF708HTR)\ parent encTfChipPk off\ shortLabel A549 SIN3A 2\ subGroups cellType=A549 factor=SIN3A\ track encTfChipPkENCFF708HTR\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_rev AorticSmsToFgf2_05hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse 0 44 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_05hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_rev AorticSmsToFgf2_05hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse 1 44 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2005hr%2c%20biol_rep3%20%28LK27%29.CNhs13575.12846-137C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 05hr, biol_rep3 (LK27)_CNhs13575_12846-137C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12846-137C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_05hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF205hrBiolRep3LK27_CNhs13575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12846-137C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4DnaseAllBoneMarrow Bone marrow (all biosamples) bigWig Avg. DNase level of 24 bone marrow experiments (all biosamples) 0 44 184 120 120 219 187 187 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneMarrowDNase.bw\ color 184,120,120\ longLabel Avg. DNase level of 24 bone marrow experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 44\ shortLabel Bone marrow (all biosamples)\ track wgEncodeReg4DnaseAllBoneMarrow\ type bigWig\ ENCFF571QPS_ENCFF546VCE_ENCFF272DJL_ENCFF423POG ENCFF571QPS_ENCFF546VCE_ENCFF272DJL_ENCFF423POG bigBed 9 + 5 Middle frontal area 46, male adult (82 years): (1) cCREs 4 44 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF571QPS_ENCFF546VCE_ENCFF272DJL_ENCFF423POG.bb\ longLabel Middle frontal area 46, male adult (82 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 109\ shortLabel ENCFF571QPS_ENCFF546VCE_ENCFF272DJL_ENCFF423POG\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__82_years_ biosampleType=tissue donor=ENCDO407UTA dataType=typeCcres\ track ENCFF571QPS_ENCFF546VCE_ENCFF272DJL_ENCFF423POG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF762IFO ENCSR000AAV - strand bigWig Uterine smooth muscle cell female adult (48 years) and female adult (50 years) - strand total RNA-seq signal 2 44 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/edc1a37e-6d9d-42c7-ab3d-e1f39a4309b5/ENCFF762IFO.bigWig\ color 186,111,165\ longLabel Uterine smooth muscle cell female adult (48 years) and female adult (50 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AAV - strand\ track wgEncodeReg4RnaSeq_ENCFF762IFO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF241ABG ENCSR000ANZ Peak bigBed 5 Myotube originated from skeletal muscle myoblast H3K4me3 peak 4 44 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/3d4656b9-db59-47a0-a9a3-447ca475b975/ENCFF241ABG.bigBed\ color 255,0,0\ longLabel Myotube originated from skeletal muscle myoblast H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANZ Peak\ track wgEncodeReg4Epigenetics_ENCFF241ABG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF092HFK ENCSR000AQH Signal bigWig K562 PHF8 ENCSR000AQH signal 2 44 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/e8bf9179-d7de-4a4e-bedb-b6a8e3f26bd3/ENCFF092HFK.bigWig\ color 254,75,173\ longLabel K562 PHF8 ENCSR000AQH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQH Signal\ track wgEncodeReg4TfChip_ENCFF092HFK\ type bigWig\ visibility full\ netHprcGCA_018472595v1 HG00438.pat netAlign GCA_018472595.1 chainHprcGCA_018472595v1 HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chain Nets 1 44 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00438.pat HG00438.alt.pat.f1_v2 (May 2021 GCA_018472595.1_HG00438.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472595.1\ parent hprcChainNetViewnet off\ priority 81\ shortLabel HG00438.pat\ subGroups view=net sample=s081 population=eas subpop=chs hap=pat\ track netHprcGCA_018472595v1\ type netAlign GCA_018472595.1 chainHprcGCA_018472595v1\ wgEncodeReg4MarkH3k4me3AllKidney Kidney (all biosamples) bigWig Avg. H3K4me3 level of 10 kidney experiments (all biosamples) 0 44 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/kidneyH3K4me3.bw\ color 92,161,153\ longLabel Avg. H3K4me3 level of 10 kidney experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 44\ shortLabel Kidney (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllKidney\ type bigWig\ kidneyGlomEndoth443 Kidney Glomerular - Endothel - Z00000443 bigWig Methylation Atlas: Kidney Glomerular - Endothel - Z00000443 2 44 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomEndoth443.bw\ color 255,105,180\ longLabel Methylation Atlas: Kidney Glomerular - Endothel - Z00000443\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 44\ shortLabel Kidney Glomerular - Endothel - Z00000443\ subGroups cellType=Endothel dataType=Replicate\ track kidneyGlomEndoth443\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k27acAllLiver Liver (all biosamples) bigWig Avg. H3K27ac level of 6 liver experiments (all biosamples) 2 44 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/liverH3K27ac.bw\ color 137,152,82\ longLabel Avg. H3K27ac level of 6 liver experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 44\ shortLabel Liver (all biosamples)\ track wgEncodeReg4MarkH3k27acAllLiver\ type bigWig\ wgEncodeRegDnaseUwM059jPeak M059J Pk narrowPeak M059J glioblastoma cell line DNaseI Peaks from ENCODE 1 44 96 255 85 175 255 170 1 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel M059J Pk\ subGroups view=a_Peaks cellType=M059J treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwM059jPeak\ wgEncodeRegDnaseUwM059jWig M059J Sg bigWig 0 6527.58 M059J glioblastoma cell line DNaseI Signal from ENCODE 0 44 96 255 85 175 255 170 0 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.39616\ shortLabel M059J Sg\ subGroups cellType=M059J treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwM059jSignal\ track wgEncodeRegDnaseUwM059jWig\ type bigWig 0 6527.58\ wgEncodeReg4TxnOvaryMinus Ovary - bigWig Avg. - strand total RNA-seq level of 7 ovary experiments (tissues and primary cells only) 0 44 161 126 151 208 190 203 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/ovaryMinus.bw\ color 161,126,151\ longLabel Avg. - strand total RNA-seq level of 7 ovary experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 44\ shortLabel Ovary -\ track wgEncodeReg4TxnOvaryMinus\ type bigWig\ gtexCovProstate Prostate bigWig Prostate 0 44 217 217 217 236 236 236 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14DAR-1026-SM-73KV3.Prostate.RNAseq.bw\ color 217,217,217\ longLabel Prostate\ parent gtexCov\ shortLabel Prostate\ track gtexCovProstate\ wgEncodeReg4MarkCtcfAllSkin Skin (all biosamples) bigWig Avg. CTCF level of 18 skin experiments (all biosamples) 0 44 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/skinCTCF.bw\ color 127,133,209\ longLabel Avg. CTCF level of 18 skin experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 44\ shortLabel Skin (all biosamples)\ track wgEncodeReg4MarkCtcfAllSkin\ type bigWig\ encTfChipPkENCFF189NMX A549 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in A549 from ENCODE 3 (ENCFF189NMX) 0 45 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in A549 from ENCODE 3 (ENCFF189NMX)\ parent encTfChipPk off\ shortLabel A549 SIX5\ subGroups cellType=A549 factor=SIX5\ track encTfChipPkENCFF189NMX\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_fwd AorticSmsToFgf2_06hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward 0 45 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_fwd AorticSmsToFgf2_06hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward 1 45 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4DnaseAllBrain Brain (all biosamples) bigWig Avg. DNase level of 245 brain experiments (all biosamples) 0 45 155 155 18 205 205 136 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/brainDNase.bw\ color 155,155,18\ longLabel Avg. DNase level of 245 brain experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 45\ shortLabel Brain (all biosamples)\ track wgEncodeReg4DnaseAllBrain\ type bigWig\ ENCFF497CVA_ENCFF981HHV_ENCFF224JSW_ENCFF653MQB ENCFF497CVA_ENCFF981HHV_ENCFF224JSW_ENCFF653MQB bigBed 9 + 5 Middle frontal area 46, female adult (87 years): (1) cCREs 4 45 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF497CVA_ENCFF981HHV_ENCFF224JSW_ENCFF653MQB.bb\ longLabel Middle frontal area 46, female adult (87 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 99\ shortLabel ENCFF497CVA_ENCFF981HHV_ENCFF224JSW_ENCFF653MQB\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO423GGP dataType=typeCcres\ track ENCFF497CVA_ENCFF981HHV_ENCFF224JSW_ENCFF653MQB\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF470BSF ENCSR000AEC + strand bigWig GM12878 + strand total RNA-seq signal 2 45 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/7c45055f-3994-4e31-bc8b-30e7b664ea3f/ENCFF470BSF.bigWig\ color 254,75,173\ longLabel GM12878 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEC + strand\ track wgEncodeReg4RnaSeq_ENCFF470BSF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF127SRZ ENCSR000ANZ Signal bigWig Myotube originated from skeletal muscle myoblast H3K4me3 signal 2 45 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/32ffafe6-728f-42d8-830f-79a13de7866a/ENCFF127SRZ.bigWig\ color 255,0,0\ longLabel Myotube originated from skeletal muscle myoblast H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ANZ Signal\ track wgEncodeReg4Epigenetics_ENCFF127SRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070CVK ENCSR000AQI Peak bigBed 5 K562 RBBP5 peaks 4 45 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/9328ff37-c84e-4094-8e3b-dfa2506a3070/ENCFF070CVK.bigBed\ labelFields none\ longLabel K562 RBBP5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF070CVK\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469405v1 HG01258.mat chain GCA_018469405.1 HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 45 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469405.1\ parent hprcChainNetViewchain off\ priority 69\ shortLabel HG01258.mat\ subGroups view=chain sample=s069 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469405v1\ type chain GCA_018469405.1\ kidneyGlomEndoth45J Kidney Glomerular - Endothel - Z0000045J bigWig Methylation Atlas: Kidney Glomerular - Endothel - Z0000045J 2 45 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomEndoth45J.bw\ color 255,105,180\ longLabel Methylation Atlas: Kidney Glomerular - Endothel - Z0000045J\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 45\ shortLabel Kidney Glomerular - Endothel - Z0000045J\ subGroups cellType=Endothel dataType=Replicate\ track kidneyGlomEndoth45J\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k4me3AllLargeIntestine Large intestine (all biosamples) bigWig Avg. H3K4me3 level of 38 large intestine experiments (all biosamples) 0 45 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/largeIntestineH3K4me3.bw\ color 86,86,36\ longLabel Avg. H3K4me3 level of 38 large intestine experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 45\ shortLabel Large intestine (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllLargeIntestine\ type bigWig\ wgEncodeReg4MarkH3k27acAllLung Lung (all biosamples) bigWig Avg. H3K27ac level of 17 lung experiments (all biosamples) 2 45 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/lungH3K27ac.bw\ color 130,163,45\ longLabel Avg. H3K27ac level of 17 lung experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 45\ shortLabel Lung (all biosamples)\ track wgEncodeReg4MarkH3k27acAllLung\ type bigWig\ wgEncodeReg4TxnPancreasPlus Pancreas + bigWig Avg. + strand total RNA-seq level of 8 pancreas experiments (tissues and primary cells only) 0 45 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpPancreasPlus.bw\ color 175,100,41\ longLabel Avg. + strand total RNA-seq level of 8 pancreas experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 45\ shortLabel Pancreas +\ track wgEncodeReg4TxnPancreasPlus\ type bigWig\ wgEncodeRegDnaseUwRpmi7951Peak RPMI-7951 Pk narrowPeak RPMI-7951 melanoma cell line DNaseI Peaks from ENCODE 1 45 85 255 90 170 255 172 1 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel RPMI-7951 Pk\ subGroups view=a_Peaks cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ track wgEncodeRegDnaseUwRpmi7951Peak\ wgEncodeRegDnaseUwRpmi7951Wig RPMI-7951 Sg bigWig 0 7339.21 RPMI-7951 melanoma cell line DNaseI Signal from ENCODE 0 45 85 255 90 170 255 172 0 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.40485\ shortLabel RPMI-7951 Sg\ subGroups cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ table wgEncodeRegDnaseUwRpmi7951Signal\ track wgEncodeRegDnaseUwRpmi7951Wig\ type bigWig 0 7339.21\ gtexCovSkinNotSunExposedSuprapubic Skin not sun exp bigWig Skin Not Sun Exposed Suprapubic 0 45 58 95 205 156 175 230 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1JN76-0626-SM-CKZOQ.Skin_Not_Sun_Exposed_Suprapubic.RNAseq.bw\ color 58,95,205\ longLabel Skin Not Sun Exposed Suprapubic\ parent gtexCov\ shortLabel Skin not sun exp\ track gtexCovSkinNotSunExposedSuprapubic\ wgEncodeReg4MarkCtcfAllUterus Uterus (all biosamples) bigWig Avg. CTCF level of 5 uterus experiments (all biosamples) 0 45 186 111 165 220 183 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/uterusCTCF.bw\ color 186,111,165\ longLabel Avg. CTCF level of 5 uterus experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 45\ shortLabel Uterus (all biosamples)\ track wgEncodeReg4MarkCtcfAllUterus\ type bigWig\ encTfChipPkENCFF256LDD A549 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in A549 from ENCODE 3 (ENCFF256LDD) 0 46 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in A549 from ENCODE 3 (ENCFF256LDD)\ parent encTfChipPk off\ shortLabel A549 SMC3\ subGroups cellType=A549 factor=SMC3\ track encTfChipPkENCFF256LDD\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_rev AorticSmsToFgf2_06hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse 0 46 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_rev AorticSmsToFgf2_06hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse 1 46 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep1%20%28LK28%29.CNhs13348.12651-134H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep1 (LK28)_CNhs13348_12651-134H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12651-134H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep1LK28_CNhs13348_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12651-134H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkCtcfAllBone Bone (all biosamples) bigWig Avg. CTCF level of 2 bone experiments (all biosamples) 0 46 121 147 150 188 201 202 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneCTCF.bw\ color 121,147,150\ longLabel Avg. CTCF level of 2 bone experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 46\ shortLabel Bone (all biosamples)\ track wgEncodeReg4MarkCtcfAllBone\ type bigWig\ wgEncodeReg4DnaseAllBreast Breast (all biosamples) bigWig Avg. DNase level of 14 breast experiments (all biosamples) 0 46 65 171 173 160 213 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/breastDNase.bw\ color 65,171,173\ longLabel Avg. DNase level of 14 breast experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 46\ shortLabel Breast (all biosamples)\ track wgEncodeReg4DnaseAllBreast\ type bigWig\ ENCFF463EIN_ENCFF005KPT_ENCFF046NYM_ENCFF250VKH ENCFF463EIN_ENCFF005KPT_ENCFF046NYM_ENCFF250VKH bigBed 9 + 5 Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (1) cCREs 4 46 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF463EIN_ENCFF005KPT_ENCFF046NYM_ENCFF250VKH.bb\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 79\ shortLabel ENCFF463EIN_ENCFF005KPT_ENCFF046NYM_ENCFF250VKH\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO448YMQ dataType=typeCcres\ track ENCFF463EIN_ENCFF005KPT_ENCFF046NYM_ENCFF250VKH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF830QII ENCSR000AEC - strand bigWig GM12878 - strand total RNA-seq signal 2 46 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/ac9c6331-efbe-465b-a8ff-a57ca3b894a6/ENCFF830QII.bigWig\ color 254,75,173\ longLabel GM12878 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEC - strand\ track wgEncodeReg4RnaSeq_ENCFF830QII\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF255ASZ ENCSR000AOA Peak bigBed 5 HeLa-S3 CTCF peak 4 46 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/dd8260bd-23e6-4740-87da-495270544b41/ENCFF255ASZ.bigBed\ color 0,176,240\ labelFields none\ longLabel HeLa-S3 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOA Peak\ track wgEncodeReg4Epigenetics_ENCFF255ASZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF569SQS ENCSR000AQI Signal bigWig K562 RBBP5 ENCSR000AQI signal 2 46 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/0f63ae62-9616-4d23-83a2-b7a7363a76b2/ENCFF569SQS.bigWig\ color 254,75,173\ longLabel K562 RBBP5 ENCSR000AQI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQI Signal\ track wgEncodeReg4TfChip_ENCFF569SQS\ type bigWig\ visibility full\ wgEncodeRegDnaseUwHaspPeak HA-sp Pk narrowPeak HA-sp spinal cord astrocyte DNaseI Peaks from ENCODE 1 46 85 255 124 170 255 189 1 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HA-sp Pk\ subGroups view=a_Peaks cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ track wgEncodeRegDnaseUwHaspPeak\ wgEncodeRegDnaseUwHaspWig HA-sp Sg bigWig 0 8189.49 HA-sp spinal cord astrocyte DNaseI Signal from ENCODE 0 46 85 255 124 170 255 189 0 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.42221\ shortLabel HA-sp Sg\ subGroups cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ table wgEncodeRegDnaseUwHaspSignal\ track wgEncodeRegDnaseUwHaspWig\ type bigWig 0 8189.49\ netHprcGCA_018469405v1 HG01258.mat netAlign GCA_018469405.1 chainHprcGCA_018469405v1 HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chain Nets 1 46 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01258.mat HG01258.pri.mat.f1_v2 (May 2021 GCA_018469405.1_HG01258.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469405.1\ parent hprcChainNetViewnet off\ priority 69\ shortLabel HG01258.mat\ subGroups view=net sample=s069 population=amr subpop=clm hap=mat\ track netHprcGCA_018469405v1\ type netAlign GCA_018469405.1 chainHprcGCA_018469405v1\ kidneyTubEndoth0PX Kidney Tubular - Endothel - Z000000PX bigWig Methylation Atlas: Kidney Tubular - Endothel - Z000000PX 2 46 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyTubEndoth0PX.bw\ color 255,105,180\ longLabel Methylation Atlas: Kidney Tubular - Endothel - Z000000PX\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 46\ shortLabel Kidney Tubular - Endothel - Z000000PX\ subGroups cellType=Endothel dataType=Replicate\ track kidneyTubEndoth0PX\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k4me3AllLiver Liver (all biosamples) bigWig Avg. H3K4me3 level of 7 liver experiments (all biosamples) 0 46 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/liverH3K4me3.bw\ color 137,152,82\ longLabel Avg. H3K4me3 level of 7 liver experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 46\ shortLabel Liver (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllLiver\ type bigWig\ wgEncodeReg4MarkH3k27acAllMuscle Muscle (all biosamples) bigWig Avg. H3K27ac level of 25 muscle experiments (all biosamples) 2 46 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/muscleH3K27ac.bw\ color 137,135,170\ longLabel Avg. H3K27ac level of 25 muscle experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 46\ shortLabel Muscle (all biosamples)\ track wgEncodeReg4MarkH3k27acAllMuscle\ type bigWig\ wgEncodeReg4TxnPancreasMinus Pancreas - bigWig Avg. - strand total RNA-seq level of 8 pancreas experiments (tissues and primary cells only) 0 46 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpPancreasMinus.bw\ color 175,100,41\ longLabel Avg. - strand total RNA-seq level of 8 pancreas experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 46\ shortLabel Pancreas -\ track wgEncodeReg4TxnPancreasMinus\ type bigWig\ gtexCovSkinSunExposedLowerleg Skin sun exp bigWig Skin Sun Exposed Lower leg 0 46 30 144 255 142 199 255 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1C475-1826-SM-73KWA.Skin_Sun_Exposed_Lower_leg.RNAseq.bw\ color 30,144,255\ longLabel Skin Sun Exposed Lower leg\ parent gtexCov\ shortLabel Skin sun exp\ track gtexCovSkinSunExposedLowerleg\ encTfChipPkENCFF404OSB A549 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in A549 from ENCODE 3 (ENCFF404OSB) 0 47 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in A549 from ENCODE 3 (ENCFF404OSB)\ parent encTfChipPk off\ shortLabel A549 SP1\ subGroups cellType=A549 factor=SP1\ track encTfChipPkENCFF404OSB\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_fwd AorticSmsToFgf2_06hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward 0 47 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_fwd AorticSmsToFgf2_06hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward 1 47 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkCtcfAllBoneMarrow Bone marrow (all biosamples) bigWig Avg. CTCF level of 4 bone marrow experiments (all biosamples) 0 47 184 120 120 219 187 187 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneMarrowCTCF.bw\ color 184,120,120\ longLabel Avg. CTCF level of 4 bone marrow experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 47\ shortLabel Bone marrow (all biosamples)\ track wgEncodeReg4MarkCtcfAllBoneMarrow\ type bigWig\ wgEncodeReg4DnaseAllConnectiveTissue Connective tissue (all biosamples) bigWig Avg. DNase level of 6 connective tissue experiments (all biosamples) 0 47 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/connectiveTissueDNase.bw\ color 138,135,169\ longLabel Avg. DNase level of 6 connective tissue experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 47\ shortLabel Connective tissue (all biosamples)\ track wgEncodeReg4DnaseAllConnectiveTissue\ type bigWig\ ENCFF813UXN_ENCFF261GPQ_ENCFF398ITJ_ENCFF992YXC ENCFF813UXN_ENCFF261GPQ_ENCFF398ITJ_ENCFF992YXC bigBed 9 + 5 Middle frontal area 46, female adult (83 years): (1) cCREs 4 47 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF813UXN_ENCFF261GPQ_ENCFF398ITJ_ENCFF992YXC.bb\ longLabel Middle frontal area 46, female adult (83 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 97\ shortLabel ENCFF813UXN_ENCFF261GPQ_ENCFF398ITJ_ENCFF992YXC\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__83_years_ biosampleType=tissue donor=ENCDO448ZXP dataType=typeCcres\ track ENCFF813UXN_ENCFF261GPQ_ENCFF398ITJ_ENCFF992YXC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF335LVS ENCSR000AEL + strand bigWig K562 + strand total RNA-seq signal 2 47 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/d18c484f-9768-43e6-be4c-f1578810ba79/ENCFF335LVS.bigWig\ color 254,75,173\ longLabel K562 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEL + strand\ track wgEncodeReg4RnaSeq_ENCFF335LVS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF179RSE ENCSR000AOA Signal bigWig HeLa-S3 CTCF signal 2 47 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a20f696c-35bd-4727-a300-8329bcab5299/ENCFF179RSE.bigWig\ color 0,176,240\ longLabel HeLa-S3 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOA Signal\ track wgEncodeReg4Epigenetics_ENCFF179RSE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF652WJB ENCSR000AQJ Peak bigBed 5 K562 SAP30 peaks 4 47 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/3c6685b1-d1d1-4f90-90be-84d7b84644a2/ENCFF652WJB.bigBed\ labelFields none\ longLabel K562 SAP30 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF652WJB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeRegDnaseUwHcfaaPeak HCFaa Pk narrowPeak HCFaa cardiac fibroblast DNaseI Peaks from ENCODE 1 47 85 255 150 170 255 202 1 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HCFaa Pk\ subGroups view=a_Peaks cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfaaPeak\ wgEncodeRegDnaseUwHcfaaWig HCFaa Sg bigWig 0 3845.33 HCFaa cardiac fibroblast DNaseI Signal from ENCODE 0 47 85 255 150 170 255 202 0 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.43568\ shortLabel HCFaa Sg\ subGroups cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ table wgEncodeRegDnaseUwHcfaaSignal\ track wgEncodeRegDnaseUwHcfaaWig\ type bigWig 0 3845.33\ chainHprcGCA_018469665v1 HG01123.mat chain GCA_018469665.1 HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chained Alignments 3 47 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469665.1\ parent hprcChainNetViewchain off\ priority 70\ shortLabel HG01123.mat\ subGroups view=chain sample=s070 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469665v1\ type chain GCA_018469665.1\ kidneyTubEndoth0Q3 Kidney Tubular - Endothel - Z000000Q3 bigWig Methylation Atlas: Kidney Tubular - Endothel - Z000000Q3 2 47 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyTubEndoth0Q3.bw\ color 255,105,180\ longLabel Methylation Atlas: Kidney Tubular - Endothel - Z000000Q3\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 47\ shortLabel Kidney Tubular - Endothel - Z000000Q3\ subGroups cellType=Endothel dataType=Replicate\ track kidneyTubEndoth0Q3\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k4me3AllLung Lung (all biosamples) bigWig Avg. H3K4me3 level of 25 lung experiments (all biosamples) 0 47 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/lungH3K4me3.bw\ color 130,163,45\ longLabel Avg. H3K4me3 level of 25 lung experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 47\ shortLabel Lung (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllLung\ type bigWig\ wgEncodeReg4MarkH3k27acAllPancreas Pancreas (all biosamples) bigWig Avg. H3K27ac level of 15 pancreas experiments (all biosamples) 2 47 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/pancreasH3K27ac.bw\ color 175,100,41\ longLabel Avg. H3K27ac level of 15 pancreas experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 47\ shortLabel Pancreas (all biosamples)\ track wgEncodeReg4MarkH3k27acAllPancreas\ type bigWig\ wgEncodeReg4TxnPlacentaPlus Placenta + bigWig Avg. + strand total RNA-seq level of 12 placenta experiments (tissues and primary cells only) 0 47 104 171 71 179 213 163 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/placentaPlus.bw\ color 104,171,71\ longLabel Avg. + strand total RNA-seq level of 12 placenta experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 47\ shortLabel Placenta +\ track wgEncodeReg4TxnPlacentaPlus\ type bigWig\ gtexCovSmallIntestineTerminalIleum Small Intestine bigWig Small Intestine Terminal Ileum 0 47 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1PIEJ-1526-SM-E6CP8.Small_Intestine_Terminal_Ileum.RNAseq.bw\ color 205,183,158\ longLabel Small Intestine Terminal Ileum\ parent gtexCov\ shortLabel Small Intestine\ track gtexCovSmallIntestineTerminalIleum\ encTfChipPkENCFF624DDK A549 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in A549 from ENCODE 3 (ENCFF624DDK) 0 48 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in A549 from ENCODE 3 (ENCFF624DDK)\ parent encTfChipPk off\ shortLabel A549 SREBF1\ subGroups cellType=A549 factor=SREBF1\ track encTfChipPkENCFF624DDK\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_rev AorticSmsToFgf2_06hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse 0 48 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_rev AorticSmsToFgf2_06hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse 1 48 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep2%20%28LK29%29.CNhs13368.12749-136A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep2 (LK29)_CNhs13368_12749-136A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12749-136A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep2LK29_CNhs13368_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12749-136A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkCtcfAllEmbryo Embryo (all biosamples) bigWig Avg. CTCF level of 4 embryo experiments (all biosamples) 0 48 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/embryoCTCF.bw\ color 118,158,101\ longLabel Avg. CTCF level of 4 embryo experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 48\ shortLabel Embryo (all biosamples)\ track wgEncodeReg4MarkCtcfAllEmbryo\ type bigWig\ wgEncodeReg4DnaseAllEmbryo Embryo (all biosamples) bigWig Avg. DNase level of 24 embryo experiments (all biosamples) 0 48 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/embryoDNase.bw\ color 118,158,101\ longLabel Avg. DNase level of 24 embryo experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 48\ shortLabel Embryo (all biosamples)\ track wgEncodeReg4DnaseAllEmbryo\ type bigWig\ ENCFF018BZK_ENCFF062WLH_ENCFF156GJU_ENCFF741DPN ENCFF018BZK_ENCFF062WLH_ENCFF156GJU_ENCFF741DPN bigBed 9 + 5 Middle frontal area 46, female adult (84 years): (1) cCREs 4 48 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF018BZK_ENCFF062WLH_ENCFF156GJU_ENCFF741DPN.bb\ longLabel Middle frontal area 46, female adult (84 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 98\ shortLabel ENCFF018BZK_ENCFF062WLH_ENCFF156GJU_ENCFF741DPN\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__84_years_ biosampleType=tissue donor=ENCDO461DJY dataType=typeCcres\ track ENCFF018BZK_ENCFF062WLH_ENCFF156GJU_ENCFF741DPN\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF257NOL ENCSR000AEL - strand bigWig K562 - strand total RNA-seq signal 2 48 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/273f9452-0d2e-45aa-8190-000decf9f91f/ENCFF257NOL.bigWig\ color 254,75,173\ longLabel K562 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEL - strand\ track wgEncodeReg4RnaSeq_ENCFF257NOL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF831LMP ENCSR000AOC Peak bigBed 5 HeLa-S3 H3K27ac peak 4 48 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/bd16d03c-0cdb-4014-9e72-60a4bee52106/ENCFF831LMP.bigBed\ color 181,145,0\ longLabel HeLa-S3 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOC Peak\ track wgEncodeReg4Epigenetics_ENCFF831LMP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF419SOE ENCSR000AQJ Signal bigWig K562 SAP30 ENCSR000AQJ signal 2 48 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/c35e54dd-3ce0-4bd2-9618-17bdbec69f20/ENCFF419SOE.bigWig\ color 254,75,173\ longLabel K562 SAP30 ENCSR000AQJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQJ Signal\ track wgEncodeReg4TfChip_ENCFF419SOE\ type bigWig\ visibility full\ netHprcGCA_018469665v1 HG01123.mat netAlign GCA_018469665.1 chainHprcGCA_018469665v1 HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chain Nets 1 48 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01123.mat HG01123.pri.mat.f1_v2.1 (May 2021 GCA_018469665.1_HG01123.pri.mat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469665.1\ parent hprcChainNetViewnet off\ priority 70\ shortLabel HG01123.mat\ subGroups view=net sample=s070 population=amr subpop=clm hap=mat\ track netHprcGCA_018469665v1\ type netAlign GCA_018469665.1 chainHprcGCA_018469665v1\ kidneyTubEndoth42R Kidney Tubular - Endothel - Z0000042R bigWig Methylation Atlas: Kidney Tubular - Endothel - Z0000042R 2 48 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyTubEndoth42R.bw\ color 255,105,180\ longLabel Methylation Atlas: Kidney Tubular - Endothel - Z0000042R\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 48\ shortLabel Kidney Tubular - Endothel - Z0000042R\ subGroups cellType=Endothel dataType=Replicate\ track kidneyTubEndoth42R\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k4me3AllMuscle Muscle (all biosamples) bigWig Avg. H3K4me3 level of 31 muscle experiments (all biosamples) 0 48 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/muscleH3K4me3.bw\ color 137,135,170\ longLabel Avg. H3K4me3 level of 31 muscle experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 48\ shortLabel Muscle (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllMuscle\ type bigWig\ wgEncodeReg4MarkH3k27acAllPenis Penis (all biosamples) bigWig Avg. H3K27ac level of 3 penis experiments (all biosamples) 2 48 20 74 159 137 164 207 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/penisH3K27ac.bw\ color 20,74,159\ longLabel Avg. H3K27ac level of 3 penis experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 48\ shortLabel Penis (all biosamples)\ track wgEncodeReg4MarkH3k27acAllPenis\ type bigWig\ wgEncodeReg4TxnPlacentaMinus Placenta - bigWig Avg. - strand total RNA-seq level of 12 placenta experiments (tissues and primary cells only) 0 48 104 171 71 179 213 163 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/placentaMinus.bw\ color 104,171,71\ longLabel Avg. - strand total RNA-seq level of 12 placenta experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 48\ shortLabel Placenta -\ track wgEncodeReg4TxnPlacentaMinus\ type bigWig\ gtexCovSpleen Spleen bigWig Spleen 0 48 205 183 158 230 219 206 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14PKU-0526-SM-6871A.Spleen.RNAseq.bw\ color 205,183,158\ longLabel Spleen\ parent gtexCov\ shortLabel Spleen\ track gtexCovSpleen\ wgEncodeRegDnaseUwWi384ohtam20nm72hrPeak WI-38 40HTAM Pk narrowPeak WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Peaks from ENCODE 1 48 85 255 171 170 255 213 1 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel WI-38 40HTAM Pk\ subGroups view=a_Peaks cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrPeak\ wgEncodeRegDnaseUwWi384ohtam20nm72hrWig WI-38 40HTAM Sg bigWig 0 9068.99 WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE 0 48 85 255 171 170 255 213 0 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.44843\ shortLabel WI-38 40HTAM Sg\ subGroups cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ table wgEncodeRegDnaseUwWi384ohtam20nm72hrSignal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrWig\ type bigWig 0 9068.99\ encTfChipPkENCFF483YCC A549 SREBF2 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF2 in A549 from ENCODE 3 (ENCFF483YCC) 0 49 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of SREBF2 in A549 from ENCODE 3 (ENCFF483YCC)\ parent encTfChipPk off\ shortLabel A549 SREBF2\ subGroups cellType=A549 factor=SREBF2\ track encTfChipPkENCFF483YCC\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_fwd AorticSmsToFgf2_06hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward 0 49 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_fwd AorticSmsToFgf2_06hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward 1 49 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=forward\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ ENCFF632MSC_ENCFF499ALA_ENCFF750UAD_ENCFF548SBE ENCFF632MSC_ENCFF499ALA_ENCFF750UAD_ENCFF548SBE bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 49 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF632MSC_ENCFF499ALA_ENCFF750UAD_ENCFF548SBE.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 87\ shortLabel ENCFF632MSC_ENCFF499ALA_ENCFF750UAD_ENCFF548SBE\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO471EKG dataType=typeCcres\ track ENCFF632MSC_ENCFF499ALA_ENCFF750UAD_ENCFF548SBE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF945UHI ENCSR000AEU + strand bigWig Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) + strand total RNA-seq signal 2 49 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/00aa9d8f-2b22-4ee2-a93f-eab7ee086dba/ENCFF945UHI.bigWig\ color 137,152,82\ longLabel Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEU + strand\ track wgEncodeReg4RnaSeq_ENCFF945UHI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF658XKZ ENCSR000AOC Signal bigWig HeLa-S3 H3K27ac signal 2 49 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/83d42045-49ef-49b5-b3c1-b0a19a3fc86c/ENCFF658XKZ.bigWig\ color 181,145,0\ longLabel HeLa-S3 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOC Signal\ track wgEncodeReg4Epigenetics_ENCFF658XKZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF998XEK ENCSR000AQK Peak bigBed 5 H1 CHD1 peaks 4 49 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/b34d4ff5-bb45-46e7-a624-ec8341b2b853/ENCFF998XEK.bigBed\ labelFields none\ longLabel H1 CHD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF998XEK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4MarkCtcfAllEpithelium Epithelium (all biosamples) bigWig CTCF level of 1 epithelium experiment (all biosamples) 0 49 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/epitheliumCTCF.bw\ color 221,126,107\ longLabel CTCF level of 1 epithelium experiment (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 49\ shortLabel Epithelium (all biosamples)\ track wgEncodeReg4MarkCtcfAllEpithelium\ type bigWig\ wgEncodeReg4DnaseAllEpithelium Epithelium (all biosamples) bigWig Avg. DNase level of 4 epithelium experiments (all biosamples) 0 49 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/epitheliumDNase.bw\ color 221,126,107\ longLabel Avg. DNase level of 4 epithelium experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 49\ shortLabel Epithelium (all biosamples)\ track wgEncodeReg4DnaseAllEpithelium\ type bigWig\ chainHprcGCA_018469685v1 HG01361.mat chain GCA_018469685.1 HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 49 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469685.1\ parent hprcChainNetViewchain off\ priority 72\ shortLabel HG01361.mat\ subGroups view=chain sample=s072 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469685v1\ type chain GCA_018469685.1\ liverEndothium0RB Liver - Endothelium - Z000000RB bigWig Methylation Atlas: Liver - Endothelium - Z000000RB 2 49 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverEndothium0RB.bw\ color 255,105,180\ longLabel Methylation Atlas: Liver - Endothelium - Z000000RB\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 49\ shortLabel Liver - Endothelium - Z000000RB\ subGroups cellType=Endothel dataType=Replicate\ track liverEndothium0RB\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwNhdfadPeak NHDF-Ad Pk narrowPeak NHDF-Ad dermal fibroblast DNaseI Peaks from ENCODE 1 49 85 255 180 170 255 217 1 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NHDF-Ad Pk\ subGroups view=a_Peaks cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfadPeak\ wgEncodeRegDnaseUwNhdfadWig NHDF-Ad Sg bigWig 0 2200.64 NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE 0 49 85 255 180 170 255 217 0 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.46595\ shortLabel NHDF-Ad Sg\ subGroups cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwNhdfadSignal\ track wgEncodeRegDnaseUwNhdfadWig\ type bigWig 0 2200.64\ wgEncodeReg4MarkH3k4me3AllPancreas Pancreas (all biosamples) bigWig Avg. H3K4me3 level of 15 pancreas experiments (all biosamples) 0 49 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/pancreasH3K4me3.bw\ color 175,100,41\ longLabel Avg. H3K4me3 level of 15 pancreas experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 49\ shortLabel Pancreas (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllPancreas\ type bigWig\ wgEncodeReg4MarkH3k27acAllProstate Prostate (all biosamples) bigWig Avg. H3K27ac level of 10 prostate experiments (all biosamples) 2 49 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/prostateH3K27ac.bw\ color 140,140,140\ longLabel Avg. H3K27ac level of 10 prostate experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 49\ shortLabel Prostate (all biosamples)\ track wgEncodeReg4MarkH3k27acAllProstate\ type bigWig\ wgEncodeReg4TxnProstatePlus Prostate + bigWig Avg. + strand total RNA-seq level of 2 prostate experiments (tissues and primary cells only) 0 49 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpProstatePlus.bw\ color 140,140,140\ longLabel Avg. + strand total RNA-seq level of 2 prostate experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 49\ shortLabel Prostate +\ track wgEncodeReg4TxnProstatePlus\ type bigWig\ gtexCovStomach Stomach bigWig Stomach 0 49 255 211 155 255 233 205 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-1526-SM-3LK7B.Stomach.RNAseq.bw\ color 255,211,155\ longLabel Stomach\ parent gtexCov\ shortLabel Stomach\ track gtexCovStomach\ encTfChipPkENCFF886KDK A549 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in A549 from ENCODE 3 (ENCFF886KDK) 0 50 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in A549 from ENCODE 3 (ENCFF886KDK)\ parent encTfChipPk off\ shortLabel A549 TAF1\ subGroups cellType=A549 factor=TAF1\ track encTfChipPkENCFF886KDK\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_rev AorticSmsToFgf2_06hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse 0 50 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_rev AorticSmsToFgf2_06hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse 1 50 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2006hr%2c%20biol_rep3%20%28LK30%29.CNhs13576.12847-137C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 06hr, biol_rep3 (LK30)_CNhs13576_12847-137C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12847-137C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_FGF2 strand=reverse\ track AorticSmoothMuscleCellResponseToFGF206hrBiolRep3LK30_CNhs13576_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12847-137C3\ urlLabel FANTOM5 Details:\ ENCFF980SJY_ENCFF752DGV_ENCFF242WZH_ENCFF816YAI ENCFF980SJY_ENCFF752DGV_ENCFF242WZH_ENCFF816YAI bigBed 9 + 5 Middle frontal area 46, male adult (71 years): (1) cCREs 4 50 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF980SJY_ENCFF752DGV_ENCFF242WZH_ENCFF816YAI.bb\ longLabel Middle frontal area 46, male adult (71 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 107\ shortLabel ENCFF980SJY_ENCFF752DGV_ENCFF242WZH_ENCFF816YAI\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__71_years_ biosampleType=tissue donor=ENCDO570AKP dataType=typeCcres\ track ENCFF980SJY_ENCFF752DGV_ENCFF242WZH_ENCFF816YAI\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF552YJA ENCSR000AEU - strand bigWig Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) - strand total RNA-seq signal 2 50 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/6f6878a1-4ba6-43c6-90c8-8a8259194bee/ENCFF552YJA.bigWig\ color 137,152,82\ longLabel Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEU - strand\ track wgEncodeReg4RnaSeq_ENCFF552YJA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF042YJV ENCSR000AOO Peak bigBed 5 Astrocyte CTCF peak 4 50 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/10e2aa21-fa83-4f5a-b4d1-e6a6dcc5b86b/ENCFF042YJV.bigBed\ color 0,176,240\ labelFields none\ longLabel Astrocyte CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOO Peak\ track wgEncodeReg4Epigenetics_ENCFF042YJV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF619DFE ENCSR000AQK Signal bigWig H1 CHD1 ENCSR000AQK signal 2 50 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/f733db58-1d7c-4db2-b38c-13b65dc732d1/ENCFF619DFE.bigWig\ color 118,158,101\ longLabel H1 CHD1 ENCSR000AQK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQK Signal\ track wgEncodeReg4TfChip_ENCFF619DFE\ type bigWig\ visibility full\ wgEncodeReg4DnaseAllEye Eye (all biosamples) bigWig Avg. DNase level of 9 eye experiments (all biosamples) 0 50 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/eyeDNase.bw\ color 163,127,144\ longLabel Avg. DNase level of 9 eye experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 50\ shortLabel Eye (all biosamples)\ track wgEncodeReg4DnaseAllEye\ type bigWig\ netHprcGCA_018469685v1 HG01361.mat netAlign GCA_018469685.1 chainHprcGCA_018469685v1 HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chain Nets 1 50 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01361.mat HG01361.pri.mat.f1_v2 (May 2021 GCA_018469685.1_HG01361.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469685.1\ parent hprcChainNetViewnet off\ priority 72\ shortLabel HG01361.mat\ subGroups view=net sample=s072 population=amr subpop=clm hap=mat\ track netHprcGCA_018469685v1\ type netAlign GCA_018469685.1 chainHprcGCA_018469685v1\ wgEncodeRegDnaseUwHsmmPeak HSMM Pk narrowPeak HSMM skeletal muscle myoblast DNaseI Peaks from ENCODE 1 50 85 255 190 170 255 222 1 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HSMM Pk\ subGroups view=a_Peaks cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmPeak\ wgEncodeRegDnaseUwHsmmWig HSMM Sg bigWig 0 14177.3 HSMM skeletal muscle myoblast DNaseI Signal from ENCODE 0 50 85 255 190 170 255 222 0 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.48469\ shortLabel HSMM Sg\ subGroups cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ table wgEncodeRegDnaseUwHsmmSignal\ track wgEncodeRegDnaseUwHsmmWig\ type bigWig 0 14177.3\ lungAlveoEndoth0Q1 Lung Alveolar - Endothel - Z000000Q1 bigWig Methylation Atlas: Lung Alveolar - Endothel - Z000000Q1 2 50 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoEndoth0Q1.bw\ color 255,105,180\ longLabel Methylation Atlas: Lung Alveolar - Endothel - Z000000Q1\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 50\ shortLabel Lung Alveolar - Endothel - Z000000Q1\ subGroups cellType=Endothel dataType=Replicate\ track lungAlveoEndoth0Q1\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkCtcfAllMouth Mouth (all biosamples) bigWig CTCF level of 1 mouth experiment (all biosamples) 0 50 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/mouthCTCF.bw\ color 130,141,158\ longLabel CTCF level of 1 mouth experiment (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 50\ shortLabel Mouth (all biosamples)\ track wgEncodeReg4MarkCtcfAllMouth\ type bigWig\ wgEncodeReg4MarkH3k4me3AllPenis Penis (all biosamples) bigWig Avg. H3K4me3 level of 5 penis experiments (all biosamples) 0 50 20 74 159 137 164 207 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/penisH3K4me3.bw\ color 20,74,159\ longLabel Avg. H3K4me3 level of 5 penis experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 50\ shortLabel Penis (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllPenis\ type bigWig\ wgEncodeReg4TxnProstateMinus Prostate - bigWig Avg. - strand total RNA-seq level of 2 prostate experiments (tissues and primary cells only) 0 50 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpProstateMinus.bw\ color 140,140,140\ longLabel Avg. - strand total RNA-seq level of 2 prostate experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 50\ shortLabel Prostate -\ track wgEncodeReg4TxnProstateMinus\ type bigWig\ wgEncodeReg4MarkH3k27acAllSkin Skin (all biosamples) bigWig Avg. H3K27ac level of 37 skin experiments (all biosamples) 2 50 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/skinH3K27ac.bw\ color 127,133,209\ longLabel Avg. H3K27ac level of 37 skin experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 50\ shortLabel Skin (all biosamples)\ track wgEncodeReg4MarkH3k27acAllSkin\ type bigWig\ gtexCovTestis Testis bigWig Testis 0 50 166 166 166 210 210 210 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1JKYN-1026-SM-CGQG4.Testis.RNAseq.bw\ color 166,166,166\ longLabel Testis\ parent gtexCov\ shortLabel Testis\ track gtexCovTestis\ encTfChipPkENCFF228CDD A549 TCF12 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in A549 from ENCODE 3 (ENCFF228CDD) 0 51 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in A549 from ENCODE 3 (ENCFF228CDD)\ parent encTfChipPk off\ shortLabel A549 TCF12\ subGroups cellType=A549 factor=TCF12\ track encTfChipPkENCFF228CDD\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_fwd AorticSmsToIL1b_00hr00minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward 0 51 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_fwd AorticSmsToIL1b_00hr00minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward 1 51 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ ENCFF036SMP_ENCFF352MMI_ENCFF942YRH_ENCFF394BNS ENCFF036SMP_ENCFF352MMI_ENCFF942YRH_ENCFF394BNS bigBed 9 + 5 Middle frontal area 46, male adult (83 years): (1) cCREs 4 51 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF036SMP_ENCFF352MMI_ENCFF942YRH_ENCFF394BNS.bb\ longLabel Middle frontal area 46, male adult (83 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 111\ shortLabel ENCFF036SMP_ENCFF352MMI_ENCFF942YRH_ENCFF394BNS\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO592ZWW dataType=typeCcres\ track ENCFF036SMP_ENCFF352MMI_ENCFF942YRH_ENCFF394BNS\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF775XPO ENCSR000AEV + strand bigWig Urinary bladder tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal 2 51 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/6e9cae81-2291-46b6-96ef-7db53832c279/ENCFF775XPO.bigWig\ color 130,141,158\ longLabel Urinary bladder tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEV + strand\ track wgEncodeReg4RnaSeq_ENCFF775XPO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF714NPP ENCSR000AOO Signal bigWig Astrocyte CTCF signal 2 51 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/51dd93dd-2907-46be-ac82-6e34d0a482c5/ENCFF714NPP.bigWig\ color 0,176,240\ longLabel Astrocyte CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOO Signal\ track wgEncodeReg4Epigenetics_ENCFF714NPP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF913MRA ENCSR000AQU Peak bigBed 5 DND-41 CTCF peaks 4 51 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/70cebb64-d4a6-4066-9629-be2496300e1c/ENCFF913MRA.bigBed\ labelFields none\ longLabel DND-41 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF913MRA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4DnaseAllHeart Heart (all biosamples) bigWig Avg. DNase level of 55 heart experiments (all biosamples) 0 51 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/heartDNase.bw\ color 116,50,165\ longLabel Avg. DNase level of 55 heart experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 51\ shortLabel Heart (all biosamples)\ track wgEncodeReg4DnaseAllHeart\ type bigWig\ chainHprcGCA_018469865v1 HG01358.mat chain GCA_018469865.1 HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chained Alignments 3 51 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469865.1\ parent hprcChainNetViewchain off\ priority 75\ shortLabel HG01358.mat\ subGroups view=chain sample=s075 population=amr subpop=clm hap=mat\ track chainHprcGCA_018469865v1\ type chain GCA_018469865.1\ wgEncodeRegDnaseUwLhcnm2Peak LHCN-M2 Pk narrowPeak LHCN-M2 skeletal myoblast DNaseI Peaks from ENCODE 1 51 85 255 193 170 255 224 1 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel LHCN-M2 Pk\ subGroups view=a_Peaks cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Peak\ wgEncodeRegDnaseUwLhcnm2Wig LHCN-M2 Sg bigWig 0 16877.8 LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE 0 51 85 255 193 170 255 224 0 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.48937\ shortLabel LHCN-M2 Sg\ subGroups cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ table wgEncodeRegDnaseUwLhcnm2Signal\ track wgEncodeRegDnaseUwLhcnm2Wig\ type bigWig 0 16877.8\ lungAlveoEndoth0QK Lung Alveolar - Endothel - Z000000QK bigWig Methylation Atlas: Lung Alveolar - Endothel - Z000000QK 2 51 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoEndoth0QK.bw\ color 255,105,180\ longLabel Methylation Atlas: Lung Alveolar - Endothel - Z000000QK\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 51\ shortLabel Lung Alveolar - Endothel - Z000000QK\ subGroups cellType=Endothel dataType=Replicate\ track lungAlveoEndoth0QK\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkCtcfAllPenis Penis (all biosamples) bigWig Avg. CTCF level of 2 penis experiments (all biosamples) 0 51 20 74 159 137 164 207 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/penisCTCF.bw\ color 20,74,159\ longLabel Avg. CTCF level of 2 penis experiments (all biosamples)\ parent wgEncodeReg4MarkCtcf off\ priority 51\ shortLabel Penis (all biosamples)\ track wgEncodeReg4MarkCtcfAllPenis\ type bigWig\ wgEncodeReg4MarkH3k4me3AllProstate Prostate (all biosamples) bigWig Avg. H3K4me3 level of 5 prostate experiments (all biosamples) 0 51 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/prostateH3K4me3.bw\ color 140,140,140\ longLabel Avg. H3K4me3 level of 5 prostate experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 51\ shortLabel Prostate (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllProstate\ type bigWig\ wgEncodeReg4TxnSkinPlus Skin + bigWig Avg. + strand total RNA-seq level of 11 skin experiments (tissues and primary cells only) 0 51 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpSkinPlus.bw\ color 127,133,209\ longLabel Avg. + strand total RNA-seq level of 11 skin experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 51\ shortLabel Skin +\ track wgEncodeReg4TxnSkinPlus\ type bigWig\ gtexCovThyroid Thyroid bigWig Thyroid 0 51 0 139 69 127 197 162 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HSGN-0726-SM-A9G2F.Thyroid.RNAseq.bw\ color 0, 139, 69\ longLabel Thyroid\ parent gtexCov\ shortLabel Thyroid\ track gtexCovThyroid\ wgEncodeReg4MarkH3k27acAllUterus Uterus (all biosamples) bigWig Avg. H3K27ac level of 3 uterus experiments (all biosamples) 2 51 186 111 165 220 183 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/uterusH3K27ac.bw\ color 186,111,165\ longLabel Avg. H3K27ac level of 3 uterus experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 51\ shortLabel Uterus (all biosamples)\ track wgEncodeReg4MarkH3k27acAllUterus\ type bigWig\ encTfChipPkENCFF593EOW A549 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in A549 from ENCODE 3 (ENCFF593EOW) 0 52 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in A549 from ENCODE 3 (ENCFF593EOW)\ parent encTfChipPk off\ shortLabel A549 USF2\ subGroups cellType=A549 factor=USF2\ track encTfChipPkENCFF593EOW\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_rev AorticSmsToIL1b_00hr00minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse 0 52 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_rev AorticSmsToIL1b_00hr00minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse 1 52 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep1%20%28LK31%29.CNhs13349.12652-134H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep1 (LK31)_CNhs13349_12652-134H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12652-134H6 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep1LK31_CNhs13349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12652-134H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k27acAllBone Bone (all biosamples) bigWig Avg. H3K27ac level of 3 bone experiments (all biosamples) 2 52 121 147 150 188 201 202 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneH3K27ac.bw\ color 121,147,150\ longLabel Avg. H3K27ac level of 3 bone experiments (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 52\ shortLabel Bone (all biosamples)\ track wgEncodeReg4MarkH3k27acAllBone\ type bigWig\ ENCFF179VUT_ENCFF711EZK_ENCFF909JLH_ENCFF924IJQ ENCFF179VUT_ENCFF711EZK_ENCFF909JLH_ENCFF924IJQ bigBed 9 + 5 Middle frontal area 46, female adult (79 years): (1) cCREs 4 52 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF179VUT_ENCFF711EZK_ENCFF909JLH_ENCFF924IJQ.bb\ longLabel Middle frontal area 46, female adult (79 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 95\ shortLabel ENCFF179VUT_ENCFF711EZK_ENCFF909JLH_ENCFF924IJQ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__79_years_ biosampleType=tissue donor=ENCDO609ZOG dataType=typeCcres\ track ENCFF179VUT_ENCFF711EZK_ENCFF909JLH_ENCFF924IJQ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF273HCM ENCSR000AEV - strand bigWig Urinary bladder tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal 2 52 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/00e8a1aa-4fed-4e0f-8593-4b8301a925a8/ENCFF273HCM.bigWig\ color 130,141,158\ longLabel Urinary bladder tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEV - strand\ track wgEncodeReg4RnaSeq_ENCFF273HCM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF373KHZ ENCSR000AOQ Peak bigBed 5 Astrocyte H3K27ac peak 4 52 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/4ea9386d-25c0-44f6-82b3-17089636d8ff/ENCFF373KHZ.bigBed\ color 181,145,0\ longLabel Astrocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOQ Peak\ track wgEncodeReg4Epigenetics_ENCFF373KHZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF398MEO ENCSR000AQU Signal bigWig DND-41 CTCF ENCSR000AQU signal 2 52 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/2477ed55-219a-404e-ad1a-2d5887297829/ENCFF398MEO.bigWig\ color 254,75,173\ longLabel DND-41 CTCF ENCSR000AQU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AQU Signal\ track wgEncodeReg4TfChip_ENCFF398MEO\ type bigWig\ visibility full\ netHprcGCA_018469865v1 HG01358.mat netAlign GCA_018469865.1 chainHprcGCA_018469865v1 HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chain Nets 1 52 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01358.mat HG01358.pri.mat.f1_v2.1 (May 2021 GCA_018469865.1_HG01358.pri.mat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469865.1\ parent hprcChainNetViewnet off\ priority 75\ shortLabel HG01358.mat\ subGroups view=net sample=s075 population=amr subpop=clm hap=mat\ track netHprcGCA_018469865v1\ type netAlign GCA_018469865.1 chainHprcGCA_018469865v1\ wgEncodeReg4DnaseAllKidney Kidney (all biosamples) bigWig Avg. DNase level of 86 kidney experiments (all biosamples) 0 52 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/kidneyDNase.bw\ color 92,161,153\ longLabel Avg. DNase level of 86 kidney experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 52\ shortLabel Kidney (all biosamples)\ track wgEncodeReg4DnaseAllKidney\ type bigWig\ wgEncodeRegDnaseUwLhcnm2Diff4dPeak LHCN-M2 diff4d Pk narrowPeak LHCN-M2 skeletal myoblast (diff 4d) DNaseI Peaks from ENCODE 1 52 85 255 198 170 255 226 1 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel LHCN-M2 diff4d Pk\ subGroups view=a_Peaks cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Diff4dPeak\ wgEncodeRegDnaseUwLhcnm2Diff4dWig LHCN-M2 diff4d Sg bigWig 0 44051.9 LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE 0 52 85 255 198 170 255 226 0 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.49766\ shortLabel LHCN-M2 diff4d Sg\ subGroups cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ table wgEncodeRegDnaseUwLhcnm2Diff4dSignal\ track wgEncodeRegDnaseUwLhcnm2Diff4dWig\ type bigWig 0 44051.9\ lungAlveoEndoth45H Lung Alveolar - Endothel - Z0000045H bigWig Methylation Atlas: Lung Alveolar - Endothel - Z0000045H 2 52 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoEndoth45H.bw\ color 255,105,180\ longLabel Methylation Atlas: Lung Alveolar - Endothel - Z0000045H\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 52\ shortLabel Lung Alveolar - Endothel - Z0000045H\ subGroups cellType=Endothel dataType=Replicate\ track lungAlveoEndoth45H\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4MarkH3k4me3AllSkin Skin (all biosamples) bigWig Avg. H3K4me3 level of 34 skin experiments (all biosamples) 0 52 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/skinH3K4me3.bw\ color 127,133,209\ longLabel Avg. H3K4me3 level of 34 skin experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 52\ shortLabel Skin (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllSkin\ type bigWig\ wgEncodeReg4TxnSkinMinus Skin - bigWig Avg. - strand total RNA-seq level of 11 skin experiments (tissues and primary cells only) 0 52 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tpSkinMinus.bw\ color 127,133,209\ longLabel Avg. - strand total RNA-seq level of 11 skin experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 52\ shortLabel Skin -\ track wgEncodeReg4TxnSkinMinus\ type bigWig\ gtexCovUterus Uterus bigWig Uterus 0 52 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1MA7W-1526-SM-DHXKS.Uterus.RNAseq.bw\ color 238,213,210\ longLabel Uterus\ parent gtexCov\ shortLabel Uterus\ track gtexCovUterus\ encTfChipPkENCFF613DTQ A549 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in A549 from ENCODE 3 (ENCFF613DTQ) 0 53 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in A549 from ENCODE 3 (ENCFF613DTQ)\ parent encTfChipPk off\ shortLabel A549 YY1\ subGroups cellType=A549 factor=YY1\ track encTfChipPkENCFF613DTQ\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_fwd AorticSmsToIL1b_00hr00minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward 0 53 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_fwd AorticSmsToIL1b_00hr00minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward 1 53 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ ENCFF284PMB_ENCFF713LKP_ENCFF973ZFT_ENCFF693AEK ENCFF284PMB_ENCFF713LKP_ENCFF973ZFT_ENCFF693AEK bigBed 9 + 5 Middle frontal area 46, male adult (78 years): (1) cCREs 4 53 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF284PMB_ENCFF713LKP_ENCFF973ZFT_ENCFF693AEK.bb\ longLabel Middle frontal area 46, male adult (78 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 108\ shortLabel ENCFF284PMB_ENCFF713LKP_ENCFF973ZFT_ENCFF693AEK\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__78_years_ biosampleType=tissue donor=ENCDO623FPG dataType=typeCcres\ track ENCFF284PMB_ENCFF713LKP_ENCFF973ZFT_ENCFF693AEK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF205FCQ ENCSR000AEW + strand bigWig Cerebellum tissue female embryo (19 weeks) and female embryo (37 weeks) + strand total RNA-seq signal 2 53 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/a217de9a-663b-476e-a427-338253b6eb21/ENCFF205FCQ.bigWig\ color 155,155,18\ longLabel Cerebellum tissue female embryo (19 weeks) and female embryo (37 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEW + strand\ track wgEncodeReg4RnaSeq_ENCFF205FCQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF643ZMC ENCSR000AOQ Signal bigWig Astrocyte H3K27ac signal 2 53 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/f31ec0e2-4bb3-43c5-af19-9a288bfae6c9/ENCFF643ZMC.bigWig\ color 181,145,0\ longLabel Astrocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOQ Signal\ track wgEncodeReg4Epigenetics_ENCFF643ZMC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF224GAI ENCSR000ARE Peak bigBed 5 Mammary epithelial cell female adult (50 years) EZH2 peaks 4 53 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b0d97abc-5400-483a-8c7c-12335d54650d/ENCFF224GAI.bigBed\ labelFields none\ longLabel Mammary epithelial cell female adult (50 years) EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF224GAI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4MarkH3k27acAllEpithelium Epithelium (all biosamples) bigWig H3K27ac level of 1 epithelium experiment (all biosamples) 2 53 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/epitheliumH3K27ac.bw\ color 221,126,107\ longLabel H3K27ac level of 1 epithelium experiment (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 53\ shortLabel Epithelium (all biosamples)\ track wgEncodeReg4MarkH3k27acAllEpithelium\ type bigWig\ chainHprcGCA_018469675v1 HG01258.pat chain GCA_018469675.1 HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 53 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469675.1\ parent hprcChainNetViewchain off\ priority 71\ shortLabel HG01258.pat\ subGroups view=chain sample=s071 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469675v1\ type chain GCA_018469675.1\ wgEncodeRegDnaseUwHsmmtubePeak HSMMtube Pk narrowPeak HSMMtube skeletal muscle myotube DNaseI Peaks from ENCODE 1 53 85 255 204 170 255 229 1 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HSMMtube Pk\ subGroups view=a_Peaks cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmtubePeak\ wgEncodeRegDnaseUwHsmmtubeWig HSMMtube Sg bigWig 0 14719.7 HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE 0 53 85 255 204 170 255 229 0 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.50509\ shortLabel HSMMtube Sg\ subGroups cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ table wgEncodeRegDnaseUwHsmmtubeSignal\ track wgEncodeRegDnaseUwHsmmtubeWig\ type bigWig 0 14719.7\ wgEncodeReg4DnaseAllLargeIntestine Large intestine (all biosamples) bigWig Avg. DNase level of 49 large intestine experiments (all biosamples) 0 53 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/largeIntestineDNase.bw\ color 86,86,36\ longLabel Avg. DNase level of 49 large intestine experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 53\ shortLabel Large intestine (all biosamples)\ track wgEncodeReg4DnaseAllLargeIntestine\ type bigWig\ pancEndoth42D Pancreas - Endothel - Z0000042D bigWig Methylation Atlas: Pancreas - Endothel - Z0000042D 2 53 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancEndoth42D.bw\ color 255,105,180\ longLabel Methylation Atlas: Pancreas - Endothel - Z0000042D\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 53\ shortLabel Pancreas - Endothel - Z0000042D\ subGroups cellType=Endothel dataType=Replicate\ track pancEndoth42D\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnSmallIntestinePlus Small intestine + bigWig Avg. + strand total RNA-seq level of 4 small intestine experiments (tissues and primary cells only) 0 53 98 98 41 176 176 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/smallIntestinePlus.bw\ color 98,98,41\ longLabel Avg. + strand total RNA-seq level of 4 small intestine experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 53\ shortLabel Small intestine +\ track wgEncodeReg4TxnSmallIntestinePlus\ type bigWig\ wgEncodeReg4MarkH3k4me3AllTestis Testis (all biosamples) bigWig Avg. H3K4me3 level of 3 testis experiments (all biosamples) 0 53 139 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/testisH3K4me3.bw\ color 139,140,140\ longLabel Avg. H3K4me3 level of 3 testis experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 53\ shortLabel Testis (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllTestis\ type bigWig\ gtexCovVagina Vagina bigWig Vagina 0 53 238 213 210 246 234 232 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1IDJU-1026-SM-AHZ2U.Vagina.RNAseq.bw\ color 238,213,210\ longLabel Vagina\ parent gtexCov\ shortLabel Vagina\ track gtexCovVagina\ encTfChipPkENCFF593ZJA A549 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in A549 from ENCODE 3 (ENCFF593ZJA) 0 54 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in A549 from ENCODE 3 (ENCFF593ZJA)\ parent encTfChipPk off\ shortLabel A549 ZBTB33\ subGroups cellType=A549 factor=ZBTB33\ track encTfChipPkENCFF593ZJA\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_rev AorticSmsToIL1b_00hr00minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse 0 54 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_rev AorticSmsToIL1b_00hr00minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse 1 54 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep2%20%28LK32%29.CNhs13369.12750-136A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep2 (LK32)_CNhs13369_12750-136A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12750-136A5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel AorticSmsToIL1b_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep2LK32_CNhs13369_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12750-136A5\ urlLabel FANTOM5 Details:\ ENCFF084QJF_ENCFF889GHD_ENCFF646GXZ_ENCFF374AEG ENCFF084QJF_ENCFF889GHD_ENCFF646GXZ_ENCFF374AEG bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 54 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF084QJF_ENCFF889GHD_ENCFF646GXZ_ENCFF374AEG.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 85\ shortLabel ENCFF084QJF_ENCFF889GHD_ENCFF646GXZ_ENCFF374AEG\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO634UMA dataType=typeCcres\ track ENCFF084QJF_ENCFF889GHD_ENCFF646GXZ_ENCFF374AEG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF290HJK ENCSR000AEW - strand bigWig Cerebellum tissue female embryo (19 weeks) and female embryo (37 weeks) - strand total RNA-seq signal 2 54 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/d4936520-97c3-4fa3-a26f-831aa7c85856/ENCFF290HJK.bigWig\ color 155,155,18\ longLabel Cerebellum tissue female embryo (19 weeks) and female embryo (37 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEW - strand\ track wgEncodeReg4RnaSeq_ENCFF290HJK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF038TDR ENCSR000AOU Peak bigBed 5 Astrocyte H3K4me3 peak 4 54 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/233d2d19-87e8-4d93-a257-95871e7c95c5/ENCFF038TDR.bigBed\ color 255,0,0\ longLabel Astrocyte H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOU Peak\ track wgEncodeReg4Epigenetics_ENCFF038TDR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF079PJF ENCSR000ARE Signal bigWig Mammary epithelial cell female adult (50 years) EZH2 ENCSR000ARE signal 2 54 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/162475a0-fca0-42d3-bc62-ac4b44292863/ENCFF079PJF.bigWig\ color 65,171,173\ longLabel Mammary epithelial cell female adult (50 years) EZH2 ENCSR000ARE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARE Signal\ track wgEncodeReg4TfChip_ENCFF079PJF\ type bigWig\ visibility full\ wgEncodeReg4MarkH3k27acAllEye Eye (all biosamples) bigWig H3K27ac level of 1 eye experiment (all biosamples) 2 54 163 127 144 209 191 199 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/eyeH3K27ac.bw\ color 163,127,144\ longLabel H3K27ac level of 1 eye experiment (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 54\ shortLabel Eye (all biosamples)\ track wgEncodeReg4MarkH3k27acAllEye\ type bigWig\ netHprcGCA_018469675v1 HG01258.pat netAlign GCA_018469675.1 chainHprcGCA_018469675v1 HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chain Nets 1 54 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01258.pat HG01258.alt.pat.f1_v2 (May 2021 GCA_018469675.1_HG01258.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469675.1\ parent hprcChainNetViewnet off\ priority 71\ shortLabel HG01258.pat\ subGroups view=net sample=s071 population=amr subpop=clm hap=pat\ track netHprcGCA_018469675v1\ type netAlign GCA_018469675.1 chainHprcGCA_018469675v1\ wgEncodeRegDnaseUwHuvecPeak HUVEC Pk narrowPeak HUVEC umbilical vein endothelial cell DNaseI Peaks from ENCODE 1 54 85 255 215 170 255 235 1 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HUVEC Pk\ subGroups view=a_Peaks cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHuvecPeak\ wgEncodeRegDnaseUwHuvecWig HUVEC Sg bigWig 0 6744.03 HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE 0 54 85 255 215 170 255 235 0 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.52185\ shortLabel HUVEC Sg\ subGroups cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHuvecSignal\ track wgEncodeRegDnaseUwHuvecWig\ type bigWig 0 6744.03\ wgEncodeReg4DnaseAllLiver Liver (all biosamples) bigWig Avg. DNase level of 14 liver experiments (all biosamples) 0 54 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/liverDNase.bw\ color 137,152,82\ longLabel Avg. DNase level of 14 liver experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 54\ shortLabel Liver (all biosamples)\ track wgEncodeReg4DnaseAllLiver\ type bigWig\ pancEndoth42X Pancreas - Endothel - Z0000042X bigWig Methylation Atlas: Pancreas - Endothel - Z0000042X 2 54 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancEndoth42X.bw\ color 255,105,180\ longLabel Methylation Atlas: Pancreas - Endothel - Z0000042X\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 54\ shortLabel Pancreas - Endothel - Z0000042X\ subGroups cellType=Endothel dataType=Replicate\ track pancEndoth42X\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnSmallIntestineMinus Small intestine - bigWig Avg. - strand total RNA-seq level of 4 small intestine experiments (tissues and primary cells only) 0 54 98 98 41 176 176 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/smallIntestineMinus.bw\ color 98,98,41\ longLabel Avg. - strand total RNA-seq level of 4 small intestine experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 54\ shortLabel Small intestine -\ track wgEncodeReg4TxnSmallIntestineMinus\ type bigWig\ wgEncodeReg4MarkH3k4me3AllUterus Uterus (all biosamples) bigWig Avg. H3K4me3 level of 4 uterus experiments (all biosamples) 0 54 186 111 165 220 183 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/uterusH3K4me3.bw\ color 186,111,165\ longLabel Avg. H3K4me3 level of 4 uterus experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 54\ shortLabel Uterus (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllUterus\ type bigWig\ gtexCovWholeBlood Whole Blood bigWig Whole Blood 0 54 255 0 255 255 127 255 0 0 0 expression 0 bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1LG7Z-0005-SM-DKPQ6.Whole_Blood.RNAseq.bw\ color 255,0,255\ longLabel Whole Blood\ parent gtexCov\ shortLabel Whole Blood\ track gtexCovWholeBlood\ encTfChipPkENCFF695QMG A673 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in A673 from ENCODE 3 (ENCFF695QMG) 0 55 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in A673 from ENCODE 3 (ENCFF695QMG)\ parent encTfChipPk off\ shortLabel A673 CTCF\ subGroups cellType=A673 factor=CTCF\ track encTfChipPkENCFF695QMG\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_fwd AorticSmsToIL1b_00hr00minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward 0 55 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_fwd AorticSmsToIL1b_00hr00minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward 1 55 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4MarkH3k4me3AllBone Bone (all biosamples) bigWig Avg. H3K4me3 level of 4 bone experiments (all biosamples) 0 55 121 147 150 188 201 202 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/boneH3K4me3.bw\ color 121,147,150\ longLabel Avg. H3K4me3 level of 4 bone experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 55\ shortLabel Bone (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllBone\ type bigWig\ ENCFF686DIT_ENCFF543PRC_ENCFF111ACH_ENCFF800TZW ENCFF686DIT_ENCFF543PRC_ENCFF111ACH_ENCFF800TZW bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (1) cCREs 4 55 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF686DIT_ENCFF543PRC_ENCFF111ACH_ENCFF800TZW.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 75\ shortLabel ENCFF686DIT_ENCFF543PRC_ENCFF111ACH_ENCFF800TZW\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO637GUS dataType=typeCcres\ track ENCFF686DIT_ENCFF543PRC_ENCFF111ACH_ENCFF800TZW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF409QSM ENCSR000AEX + strand bigWig Diencephalon tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 55 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/7db4f5db-183c-4bd1-8d00-f84e7bfbf42b/ENCFF409QSM.bigWig\ color 155,155,18\ longLabel Diencephalon tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEX + strand\ track wgEncodeReg4RnaSeq_ENCFF409QSM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF577BWJ ENCSR000AOU Signal bigWig Astrocyte H3K4me3 signal 2 55 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/dee04c6c-f681-4940-a9c9-1d65a5e3ec81/ENCFF577BWJ.bigWig\ color 255,0,0\ longLabel Astrocyte H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AOU Signal\ track wgEncodeReg4Epigenetics_ENCFF577BWJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF912EIW ENCSR000ARI Peak bigBed 5 HepG2 EZH2 peaks 4 55 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/30580340-c7c2-4983-b457-fbfdd285f394/ENCFF912EIW.bigBed\ labelFields none\ longLabel HepG2 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF912EIW\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469695v1 HG01123.pat chain GCA_018469695.1 HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chained Alignments 3 55 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469695.1\ parent hprcChainNetViewchain off\ priority 73\ shortLabel HG01123.pat\ subGroups view=chain sample=s073 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469695v1\ type chain GCA_018469695.1\ wgEncodeRegDnaseUwHmveclblPeak HMVEC-LBl Pk narrowPeak HMVEC-LBl lung microvascular epithelium. blood DNaseI Peaks from ENCODE 1 55 85 255 220 170 255 237 1 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-LBl Pk\ subGroups view=a_Peaks cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmveclblPeak\ wgEncodeRegDnaseUwHmveclblWig HMVEC-LBl Sg bigWig 0 2898.86 HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE 0 55 85 255 220 170 255 237 0 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.52972\ shortLabel HMVEC-LBl Sg\ subGroups cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmveclblSignal\ track wgEncodeRegDnaseUwHmveclblWig\ type bigWig 0 2898.86\ wgEncodeReg4DnaseAllLung Lung (all biosamples) bigWig Avg. DNase level of 65 lung experiments (all biosamples) 0 55 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/lungDNase.bw\ color 130,163,45\ longLabel Avg. DNase level of 65 lung experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 55\ shortLabel Lung (all biosamples)\ track wgEncodeReg4DnaseAllLung\ type bigWig\ wgEncodeReg4MarkH3k27acAllMouth Mouth (all biosamples) bigWig H3K27ac level of 1 mouth experiment (all biosamples) 2 55 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/mouthH3K27ac.bw\ color 130,141,158\ longLabel H3K27ac level of 1 mouth experiment (all biosamples)\ parent wgEncodeReg4MarkH3k27ac off\ priority 55\ shortLabel Mouth (all biosamples)\ track wgEncodeReg4MarkH3k27acAllMouth\ type bigWig\ pancEndoth430 Pancreas - Endothel - Z00000430 bigWig Methylation Atlas: Pancreas - Endothel - Z00000430 2 55 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancEndoth430.bw\ color 255,105,180\ longLabel Methylation Atlas: Pancreas - Endothel - Z00000430\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 55\ shortLabel Pancreas - Endothel - Z00000430\ subGroups cellType=Endothel dataType=Replicate\ track pancEndoth430\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnSpinalCordPlus Spinal cord + bigWig Avg. + strand total RNA-seq level of 1 spinal cord experiments (tissues and primary cells only) 0 55 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spinalCordPlus.bw\ color 130,141,158\ longLabel Avg. + strand total RNA-seq level of 1 spinal cord experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 55\ shortLabel Spinal cord +\ track wgEncodeReg4TxnSpinalCordPlus\ type bigWig\ encTfChipPkENCFF807XMX A673 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in A673 from ENCODE 3 (ENCFF807XMX) 0 56 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in A673 from ENCODE 3 (ENCFF807XMX)\ parent encTfChipPk off\ shortLabel A673 EZH2\ subGroups cellType=A673 factor=EZH2\ track encTfChipPkENCFF807XMX\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_rev AorticSmsToIL1b_00hr00minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse 0 56 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_rev AorticSmsToIL1b_00hr00minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse 1 56 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr00min%2c%20biol_rep3%20%28LK33%29.CNhs13577.12848-137C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr00min, biol_rep3 (LK33)_CNhs13577_12848-137C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12848-137C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr00minBiolRep3LK33_CNhs13577_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12848-137C4\ urlLabel FANTOM5 Details:\ ENCFF874WYJ_ENCFF562LUZ_ENCFF489BZS_ENCFF729DUW ENCFF874WYJ_ENCFF562LUZ_ENCFF489BZS_ENCFF729DUW bigBed 9 + 5 Middle frontal area 46, female adult (87 years): (1) cCREs 4 56 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF874WYJ_ENCFF562LUZ_ENCFF489BZS_ENCFF729DUW.bb\ longLabel Middle frontal area 46, female adult (87 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 100\ shortLabel ENCFF874WYJ_ENCFF562LUZ_ENCFF489BZS_ENCFF729DUW\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO640RUC dataType=typeCcres\ track ENCFF874WYJ_ENCFF562LUZ_ENCFF489BZS_ENCFF729DUW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF800CGN ENCSR000AEX - strand bigWig Diencephalon tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 56 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/4673be79-e7e8-4259-95ff-9d1ba28d0c84/ENCFF800CGN.bigWig\ color 155,155,18\ longLabel Diencephalon tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEX - strand\ track wgEncodeReg4RnaSeq_ENCFF800CGN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF491ZJZ ENCSR000APF Peak bigBed 5 Osteoblast CTCF peak 4 56 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b2461506-83a9-46bc-89aa-25f0c78faeaa/ENCFF491ZJZ.bigBed\ color 0,176,240\ labelFields none\ longLabel Osteoblast CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APF Peak\ track wgEncodeReg4Epigenetics_ENCFF491ZJZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF559YWA ENCSR000ARI Signal bigWig HepG2 EZH2 ENCSR000ARI signal 2 56 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/2d63c416-2d00-46e8-8e20-118fdb81e526/ENCFF559YWA.bigWig\ color 137,152,82\ longLabel HepG2 EZH2 ENCSR000ARI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARI Signal\ track wgEncodeReg4TfChip_ENCFF559YWA\ type bigWig\ visibility full\ wgEncodeReg4MarkH3k4me3AllEpithelium Epithelium (all biosamples) bigWig H3K4me3 level of 1 epithelium experiment (all biosamples) 0 56 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/epitheliumH3K4me3.bw\ color 221,126,107\ longLabel H3K4me3 level of 1 epithelium experiment (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 56\ shortLabel Epithelium (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllEpithelium\ type bigWig\ netHprcGCA_018469695v1 HG01123.pat netAlign GCA_018469695.1 chainHprcGCA_018469695v1 HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chain Nets 1 56 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01123.pat HG01123.alt.pat.f1_v2.1 (May 2021 GCA_018469695.1_HG01123.alt.pat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469695.1\ parent hprcChainNetViewnet off\ priority 73\ shortLabel HG01123.pat\ subGroups view=net sample=s073 population=amr subpop=clm hap=pat\ track netHprcGCA_018469695v1\ type netAlign GCA_018469695.1 chainHprcGCA_018469695v1\ wgEncodeRegDnaseUwHmvecdbladPeak HMVEC-dBl-Ad Pk narrowPeak HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Peaks from ENCODE 1 56 85 255 224 170 255 239 1 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dBl-Ad Pk\ subGroups view=a_Peaks cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdbladPeak\ wgEncodeRegDnaseUwHmvecdbladWig HMVEC-dBl-Ad Sg bigWig 0 6571.28 HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE 0 56 85 255 224 170 255 239 0 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.53388\ shortLabel HMVEC-dBl-Ad Sg\ subGroups cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdbladSignal\ track wgEncodeRegDnaseUwHmvecdbladWig\ type bigWig 0 6571.28\ wgEncodeReg4DnaseAllMouth Mouth (all biosamples) bigWig Avg. DNase level of 5 mouth experiments (all biosamples) 0 56 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/mouthDNase.bw\ color 130,141,158\ longLabel Avg. DNase level of 5 mouth experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 56\ shortLabel Mouth (all biosamples)\ track wgEncodeReg4DnaseAllMouth\ type bigWig\ pancIsletEndoth42Y Pancreas Islet - Endothel - Z0000042Y bigWig Methylation Atlas: Pancreas Islet - Endothel - Z0000042Y 2 56 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancIsletEndoth42Y.bw\ color 255,105,180\ longLabel Methylation Atlas: Pancreas Islet - Endothel - Z0000042Y\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 56\ shortLabel Pancreas Islet - Endothel - Z0000042Y\ subGroups cellType=Endothel dataType=Replicate\ track pancIsletEndoth42Y\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnSpinalCordMinus Spinal cord - bigWig Avg. - strand total RNA-seq level of 1 spinal cord experiments (tissues and primary cells only) 0 56 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spinalCordMinus.bw\ color 130,141,158\ longLabel Avg. - strand total RNA-seq level of 1 spinal cord experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 56\ shortLabel Spinal cord -\ track wgEncodeReg4TxnSpinalCordMinus\ type bigWig\ encTfChipPkENCFF652LEH AG04449 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG04449 from ENCODE 3 (ENCFF652LEH) 0 57 152 255 85 203 255 170 0 0 0 regulation 1 color 152,255,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG04449 from ENCODE 3 (ENCFF652LEH)\ parent encTfChipPk off\ shortLabel AG04449 CTCF\ subGroups cellType=AG04449 factor=CTCF\ track encTfChipPkENCFF652LEH\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_fwd AorticSmsToIL1b_00hr15minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward 0 57 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_fwd AorticSmsToIL1b_00hr15minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward 1 57 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ ENCFF592RWK_ENCFF922WUL_ENCFF686LXM_ENCFF111MOL ENCFF592RWK_ENCFF922WUL_ENCFF686LXM_ENCFF111MOL bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 57 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF592RWK_ENCFF922WUL_ENCFF686LXM_ENCFF111MOL.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 91\ shortLabel ENCFF592RWK_ENCFF922WUL_ENCFF686LXM_ENCFF111MOL\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO660TGP dataType=typeCcres\ track ENCFF592RWK_ENCFF922WUL_ENCFF686LXM_ENCFF111MOL\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF217HQN ENCSR000AEY + strand bigWig Frontal cortex tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 57 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/407d7be2-7c22-4b50-90f7-7ec2e94c2164/ENCFF217HQN.bigWig\ color 155,155,18\ longLabel Frontal cortex tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEY + strand\ track wgEncodeReg4RnaSeq_ENCFF217HQN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF185GGC ENCSR000APF Signal bigWig Osteoblast CTCF signal 2 57 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b25647d8-d4f3-4832-bca8-c325c917e910/ENCFF185GGC.bigWig\ color 0,176,240\ longLabel Osteoblast CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APF Signal\ track wgEncodeReg4Epigenetics_ENCFF185GGC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070STK ENCSR000ARK Peak bigBed 5 Keratinocyte male EZH2 peaks 4 57 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/ebcf580c-cb2d-4f27-aad9-8aaea5e76cca/ENCFF070STK.bigBed\ labelFields none\ longLabel Keratinocyte male EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF070STK\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469705v1 HG01361.pat chain GCA_018469705.1 HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 57 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469705.1\ parent hprcChainNetViewchain off\ priority 74\ shortLabel HG01361.pat\ subGroups view=chain sample=s074 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469705v1\ type chain GCA_018469705.1\ wgEncodeRegDnaseUwHmvecdlyneoPeak HMVEC-dLy-Neo Pk narrowPeak HMVEC-dLy-Neo dermal MV endothelial cell, neonate lymph DNaseI Peaks from ENCODE 1 57 85 255 226 170 255 240 1 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV endothelial cell, neonate lymph DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dLy-Neo Pk\ subGroups view=a_Peaks cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyneoPeak\ wgEncodeRegDnaseUwHmvecdlyneoWig HMVEC-dLy-Neo Sg bigWig 0 9237.62 HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Signal from ENCODE 0 57 85 255 226 170 255 240 0 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.53734\ shortLabel HMVEC-dLy-Neo Sg\ subGroups cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdlyneoSignal\ track wgEncodeRegDnaseUwHmvecdlyneoWig\ type bigWig 0 9237.62\ wgEncodeReg4MarkH3k4me3AllMouth Mouth (all biosamples) bigWig Avg. H3K4me3 level of 2 mouth experiments (all biosamples) 0 57 130 141 158 192 198 206 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/mouthH3K4me3.bw\ color 130,141,158\ longLabel Avg. H3K4me3 level of 2 mouth experiments (all biosamples)\ parent wgEncodeReg4MarkH3k4me3 off\ priority 57\ shortLabel Mouth (all biosamples)\ track wgEncodeReg4MarkH3k4me3AllMouth\ type bigWig\ wgEncodeReg4DnaseAllMuscle Muscle (all biosamples) bigWig Avg. DNase level of 71 muscle experiments (all biosamples) 0 57 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/muscleDNase.bw\ color 137,135,170\ longLabel Avg. DNase level of 71 muscle experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 57\ shortLabel Muscle (all biosamples)\ track wgEncodeReg4DnaseAllMuscle\ type bigWig\ saphVeinEndoth0RM Saphenous Vein - Endothel - Z000000RM bigWig Methylation Atlas: Saphenous Vein - Endothel - Z000000RM 2 57 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/saphVeinEndoth0RM.bw\ color 255,105,180\ longLabel Methylation Atlas: Saphenous Vein - Endothel - Z000000RM\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 57\ shortLabel Saphenous Vein - Endothel - Z000000RM\ subGroups cellType=Endothel dataType=Replicate\ track saphVeinEndoth0RM\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnSpleenPlus Spleen + bigWig Avg. + strand total RNA-seq level of 8 spleen experiments (tissues and primary cells only) 0 57 136 157 97 195 206 176 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spleenPlus.bw\ color 136,157,97\ longLabel Avg. + strand total RNA-seq level of 8 spleen experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 57\ shortLabel Spleen +\ track wgEncodeReg4TxnSpleenPlus\ type bigWig\ encTfChipPkENCFF788LNG AG04450 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG04450 from ENCODE 3 (ENCFF788LNG) 0 58 144 255 85 199 255 170 0 0 0 regulation 1 color 144,255,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG04450 from ENCODE 3 (ENCFF788LNG)\ parent encTfChipPk off\ shortLabel AG04450 CTCF\ subGroups cellType=AG04450 factor=CTCF\ track encTfChipPkENCFF788LNG\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_rev AorticSmsToIL1b_00hr15minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse 0 58 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_rev AorticSmsToIL1b_00hr15minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse 1 58 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep1%20%28LK34%29.CNhs13350.12653-134H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep1 (LK34)_CNhs13350_12653-134H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12653-134H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep1LK34_CNhs13350_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12653-134H7\ urlLabel FANTOM5 Details:\ ENCFF769AFQ_ENCFF557GVR_ENCFF943HGP_ENCFF393UAO ENCFF769AFQ_ENCFF557GVR_ENCFF943HGP_ENCFF393UAO bigBed 9 + 5 Middle frontal area 46, male adult (86 years): (1) cCREs 4 58 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF769AFQ_ENCFF557GVR_ENCFF943HGP_ENCFF393UAO.bb\ longLabel Middle frontal area 46, male adult (86 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 113\ shortLabel ENCFF769AFQ_ENCFF557GVR_ENCFF943HGP_ENCFF393UAO\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__86_years_ biosampleType=tissue donor=ENCDO666UNK dataType=typeCcres\ track ENCFF769AFQ_ENCFF557GVR_ENCFF943HGP_ENCFF393UAO\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF167SSR ENCSR000AEY - strand bigWig Frontal cortex tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 58 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/7423dd44-d999-4f29-87d7-9641b9cdbe48/ENCFF167SSR.bigWig\ color 155,155,18\ longLabel Frontal cortex tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEY - strand\ track wgEncodeReg4RnaSeq_ENCFF167SSR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF989KNN ENCSR000APH Peak bigBed 5 Osteoblast H3K27ac peak 4 58 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/4e5abb7c-07c4-48a5-b46a-8d2074bc1114/ENCFF989KNN.bigBed\ color 181,145,0\ longLabel Osteoblast H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APH Peak\ track wgEncodeReg4Epigenetics_ENCFF989KNN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF566SGP ENCSR000ARK Signal bigWig Keratinocyte male EZH2 ENCSR000ARK signal 2 58 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/eb82da23-2414-4460-83b1-bf1712e1889c/ENCFF566SGP.bigWig\ color 127,133,209\ longLabel Keratinocyte male EZH2 ENCSR000ARK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARK Signal\ track wgEncodeReg4TfChip_ENCFF566SGP\ type bigWig\ visibility full\ netHprcGCA_018469705v1 HG01361.pat netAlign GCA_018469705.1 chainHprcGCA_018469705v1 HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chain Nets 1 58 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01361.pat HG01361.alt.pat.f1_v2 (May 2021 GCA_018469705.1_HG01361.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469705.1\ parent hprcChainNetViewnet off\ priority 74\ shortLabel HG01361.pat\ subGroups view=net sample=s074 population=amr subpop=clm hap=pat\ track netHprcGCA_018469705v1\ type netAlign GCA_018469705.1 chainHprcGCA_018469705v1\ wgEncodeRegDnaseUwHmvecdblneoPeak HMVEC-dBl-Neo Pk narrowPeak HMVEC-dBl-Neo dermal MV endothelial cell, neonate blood DNaseI Peaks from ENCODE 1 58 85 255 229 170 255 242 1 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endothelial cell, neonate blood DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dBl-Neo Pk\ subGroups view=a_Peaks cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdblneoPeak\ wgEncodeRegDnaseUwHmvecdblneoWig HMVEC-dBl-Neo Sg bigWig 0 6275.08 HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE 0 58 85 255 229 170 255 242 0 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.54191\ shortLabel HMVEC-dBl-Neo Sg\ subGroups cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdblneoSignal\ track wgEncodeRegDnaseUwHmvecdblneoWig\ type bigWig 0 6275.08\ wgEncodeReg4DnaseAllPancreas Pancreas (all biosamples) bigWig Avg. DNase level of 18 pancreas experiments (all biosamples) 0 58 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/pancreasDNase.bw\ color 175,100,41\ longLabel Avg. DNase level of 18 pancreas experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 58\ shortLabel Pancreas (all biosamples)\ track wgEncodeReg4DnaseAllPancreas\ type bigWig\ saphVeinEndoth0S7 Saphenous Vein - Endothel - Z000000S7 bigWig Methylation Atlas: Saphenous Vein - Endothel - Z000000S7 2 58 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/saphVeinEndoth0S7.bw\ color 255,105,180\ longLabel Methylation Atlas: Saphenous Vein - Endothel - Z000000S7\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 58\ shortLabel Saphenous Vein - Endothel - Z000000S7\ subGroups cellType=Endothel dataType=Replicate\ track saphVeinEndoth0S7\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnSpleenMinus Spleen - bigWig Avg. - strand total RNA-seq level of 8 spleen experiments (tissues and primary cells only) 0 58 136 157 97 195 206 176 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/spleenMinus.bw\ color 136,157,97\ longLabel Avg. - strand total RNA-seq level of 8 spleen experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 58\ shortLabel Spleen -\ track wgEncodeReg4TxnSpleenMinus\ type bigWig\ encTfChipPkENCFF826NCK AG09309 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG09309 from ENCODE 3 (ENCFF826NCK) 0 59 255 186 85 255 220 170 0 0 0 regulation 1 color 255,186,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG09309 from ENCODE 3 (ENCFF826NCK)\ parent encTfChipPk off\ shortLabel AG09309 CTCF\ subGroups cellType=AG09309 factor=CTCF\ track encTfChipPkENCFF826NCK\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_fwd AorticSmsToIL1b_00hr15minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward 0 59 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_fwd AorticSmsToIL1b_00hr15minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward 1 59 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ ENCFF052CPA_ENCFF198NDW_ENCFF371ZKC_ENCFF294XWZ ENCFF052CPA_ENCFF198NDW_ENCFF371ZKC_ENCFF294XWZ bigBed 9 + 5 Middle frontal area 46, female adult (88 years): (1) cCREs 4 59 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF052CPA_ENCFF198NDW_ENCFF371ZKC_ENCFF294XWZ.bb\ longLabel Middle frontal area 46, female adult (88 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 101\ shortLabel ENCFF052CPA_ENCFF198NDW_ENCFF371ZKC_ENCFF294XWZ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__88_years_ biosampleType=tissue donor=ENCDO669IVL dataType=typeCcres\ track ENCFF052CPA_ENCFF198NDW_ENCFF371ZKC_ENCFF294XWZ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF454SXU ENCSR000AEZ + strand bigWig Heart tissue female embryo (19 weeks) and female embryo (28 weeks) + strand total RNA-seq signal 2 59 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/b32b2ed9-a825-49a8-962d-1a0b09358b6e/ENCFF454SXU.bigWig\ color 116,50,165\ longLabel Heart tissue female embryo (19 weeks) and female embryo (28 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEZ + strand\ track wgEncodeReg4RnaSeq_ENCFF454SXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF103MXT ENCSR000APH Signal bigWig Osteoblast H3K27ac signal 2 59 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/5c985504-2d74-454f-bc55-b0c8ac691624/ENCFF103MXT.bigWig\ color 181,145,0\ longLabel Osteoblast H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APH Signal\ track wgEncodeReg4Epigenetics_ENCFF103MXT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF479BAW ENCSR000ARO Peak bigBed 5 Fibroblast of lung female child (11 years) and male adult (45 years) EZH2 peaks 4 59 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/dfc3c342-6c7a-4d0e-a9a4-f437af965254/ENCFF479BAW.bigBed\ labelFields none\ longLabel Fibroblast of lung female child (11 years) and male adult (45 years) EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF479BAW\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469965v1 HG01358.pat chain GCA_018469965.1 HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chained Alignments 3 59 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chained Alignments\ otherDb GCA_018469965.1\ parent hprcChainNetViewchain off\ priority 76\ shortLabel HG01358.pat\ subGroups view=chain sample=s076 population=amr subpop=clm hap=pat\ track chainHprcGCA_018469965v1\ type chain GCA_018469965.1\ wgEncodeRegDnaseUwHrgecPeak HRGEC Pk narrowPeak HRGEC renal glomerular endothelial cell DNaseI Peaks from ENCODE 1 59 85 255 232 170 255 243 1 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRGEC Pk\ subGroups view=a_Peaks cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrgecPeak\ wgEncodeRegDnaseUwHrgecWig HRGEC Sg bigWig 0 7095.64 HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE 0 59 85 255 232 170 255 243 0 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.54737\ shortLabel HRGEC Sg\ subGroups cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwHrgecSignal\ track wgEncodeRegDnaseUwHrgecWig\ type bigWig 0 7095.64\ wgEncodeReg4DnaseAllPenis Penis (all biosamples) bigWig Avg. DNase level of 7 penis experiments (all biosamples) 0 59 20 74 159 137 164 207 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/penisDNase.bw\ color 20,74,159\ longLabel Avg. DNase level of 7 penis experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 59\ shortLabel Penis (all biosamples)\ track wgEncodeReg4DnaseAllPenis\ type bigWig\ saphVeinEndoth0SB Saphenous Vein - Endothel - Z000000SB bigWig Methylation Atlas: Saphenous Vein - Endothel - Z000000SB 2 59 255 105 180 255 180 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/saphVeinEndoth0SB.bw\ color 255,105,180\ longLabel Methylation Atlas: Saphenous Vein - Endothel - Z000000SB\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 59\ shortLabel Saphenous Vein - Endothel - Z000000SB\ subGroups cellType=Endothel dataType=Replicate\ track saphVeinEndoth0SB\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnStomachPlus Stomach + bigWig Avg. + strand total RNA-seq level of 5 stomach experiments (tissues and primary cells only) 0 59 145 144 99 200 199 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/stomachPlus.bw\ color 145,144,99\ longLabel Avg. + strand total RNA-seq level of 5 stomach experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 59\ shortLabel Stomach +\ track wgEncodeReg4TxnStomachPlus\ type bigWig\ encTfChipPkENCFF119XBW AG09319 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG09319 from ENCODE 3 (ENCFF119XBW) 0 60 255 221 85 255 238 170 0 0 0 regulation 1 color 255,221,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG09319 from ENCODE 3 (ENCFF119XBW)\ parent encTfChipPk off\ shortLabel AG09319 CTCF\ subGroups cellType=AG09319 factor=CTCF\ track encTfChipPkENCFF119XBW\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_rev AorticSmsToIL1b_00hr15minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse 0 60 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_rev AorticSmsToIL1b_00hr15minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse 1 60 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep2%20%28LK35%29.CNhs13370.12751-136A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep2 (LK35)_CNhs13370_12751-136A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12751-136A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep2LK35_CNhs13370_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12751-136A6\ urlLabel FANTOM5 Details:\ bloodTMerged Blood T Cells Merged bigWig Methylation Atlas: Blood T Cells Merged Samples 2 60 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTMerged.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood T Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 60\ shortLabel Blood T Cells Merged\ subGroups cellType=Blood-T dataType=Merged\ track bloodTMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF456EHL_ENCFF867WWB_ENCFF701XQB_ENCFF968SXQ ENCFF456EHL_ENCFF867WWB_ENCFF701XQB_ENCFF968SXQ bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 60 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF456EHL_ENCFF867WWB_ENCFF701XQB_ENCFF968SXQ.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 90\ shortLabel ENCFF456EHL_ENCFF867WWB_ENCFF701XQB_ENCFF968SXQ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO672KST dataType=typeCcres\ track ENCFF456EHL_ENCFF867WWB_ENCFF701XQB_ENCFF968SXQ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF187OVQ ENCSR000AEZ - strand bigWig Heart tissue female embryo (19 weeks) and female embryo (28 weeks) - strand total RNA-seq signal 2 60 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/f370dfa0-09eb-4f3b-ad59-f8b356d5d61c/ENCFF187OVQ.bigWig\ color 116,50,165\ longLabel Heart tissue female embryo (19 weeks) and female embryo (28 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AEZ - strand\ track wgEncodeReg4RnaSeq_ENCFF187OVQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF986DNJ ENCSR000APM Peak bigBed 5 Fibroblast of dermis CTCF peak 4 60 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a509aa3f-7ebc-4332-9481-a24ae01520c8/ENCFF986DNJ.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of dermis CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APM Peak\ track wgEncodeReg4Epigenetics_ENCFF986DNJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF469MCE ENCSR000ARO Signal bigWig Fibroblast of lung female child (11 years) and male adult (45 years) EZH2 ENCSR000ARO signal 2 60 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/67b2d3f4-f02a-48ac-89cd-cae63c7fdcdc/ENCFF469MCE.bigWig\ color 130,163,45\ longLabel Fibroblast of lung female child (11 years) and male adult (45 years) EZH2 ENCSR000ARO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARO Signal\ track wgEncodeReg4TfChip_ENCFF469MCE\ type bigWig\ visibility full\ netHprcGCA_018469965v1 HG01358.pat netAlign GCA_018469965.1 chainHprcGCA_018469965v1 HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chain Nets 1 60 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01358.pat HG01358.alt.pat.f1_v2.1 (May 2021 GCA_018469965.1_HG01358.alt.pat.f1_v2.1) HPRC project computed Chain Nets\ otherDb GCA_018469965.1\ parent hprcChainNetViewnet off\ priority 76\ shortLabel HG01358.pat\ subGroups view=net sample=s076 population=amr subpop=clm hap=pat\ track netHprcGCA_018469965v1\ type netAlign GCA_018469965.1 chainHprcGCA_018469965v1\ wgEncodeRegDnaseUwHmvecllyPeak HMVEC-LLy Pk narrowPeak HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Peaks from ENCODE 1 60 85 255 243 170 255 249 1 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-LLy Pk\ subGroups view=a_Peaks cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecllyPeak\ wgEncodeRegDnaseUwHmvecllyWig HMVEC-LLy Sg bigWig 0 21274 HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE 0 60 85 255 243 170 255 249 0 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.56304\ shortLabel HMVEC-LLy Sg\ subGroups cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecllySignal\ track wgEncodeRegDnaseUwHmvecllyWig\ type bigWig 0 21274\ wgEncodeReg4DnaseAllPlacenta Placenta (all biosamples) bigWig Avg. DNase level of 25 placenta experiments (all biosamples) 0 60 104 171 71 179 213 163 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/placentaDNase.bw\ color 104,171,71\ longLabel Avg. DNase level of 25 placenta experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 60\ shortLabel Placenta (all biosamples)\ track wgEncodeReg4DnaseAllPlacenta\ type bigWig\ wgEncodeReg4TxnStomachMinus Stomach - bigWig Avg. - strand total RNA-seq level of 5 stomach experiments (tissues and primary cells only) 0 60 145 144 99 200 199 177 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/stomachMinus.bw\ color 145,144,99\ longLabel Avg. - strand total RNA-seq level of 5 stomach experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 60\ shortLabel Stomach -\ track wgEncodeReg4TxnStomachMinus\ type bigWig\ encTfChipPkENCFF100IYW AG10803 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in AG10803 from ENCODE 3 (ENCFF100IYW) 0 61 220 255 85 237 255 170 0 0 0 regulation 1 color 220,255,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in AG10803 from ENCODE 3 (ENCFF100IYW)\ parent encTfChipPk off\ shortLabel AG10803 CTCF\ subGroups cellType=AG10803 factor=CTCF\ track encTfChipPkENCFF100IYW\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_fwd AorticSmsToIL1b_00hr15minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward 0 61 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_fwd AorticSmsToIL1b_00hr15minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward 1 61 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ bloodTCd30TV Blood - T CD3 - Z000000TV bigWig Methylation Atlas: Blood - T CD3 - Z000000TV 2 61 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd30TV.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD3 - Z000000TV\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 61\ shortLabel Blood - T CD3 - Z000000TV\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd30TV\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF986YEI_ENCFF345SEW_ENCFF137KZR_ENCFF341CQE ENCFF986YEI_ENCFF345SEW_ENCFF137KZR_ENCFF341CQE bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (1) cCREs 4 61 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF986YEI_ENCFF345SEW_ENCFF137KZR_ENCFF341CQE.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view on\ priority 92\ shortLabel ENCFF986YEI_ENCFF345SEW_ENCFF137KZR_ENCFF341CQE\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__89_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO697SWU dataType=typeCcres\ track ENCFF986YEI_ENCFF345SEW_ENCFF137KZR_ENCFF341CQE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF236DSW ENCSR000AFA + strand bigWig Metanephros tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal 2 61 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/37f3ca00-f0d7-4b01-aec9-bb0d58f3be4b/ENCFF236DSW.bigWig\ color 92,161,153\ longLabel Metanephros tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFA + strand\ track wgEncodeReg4RnaSeq_ENCFF236DSW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF720GFK ENCSR000APM Signal bigWig Fibroblast of dermis CTCF signal 2 61 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6e69edda-743b-4f3a-a802-f318373f7944/ENCFF720GFK.bigWig\ color 0,176,240\ longLabel Fibroblast of dermis CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APM Signal\ track wgEncodeReg4Epigenetics_ENCFF720GFK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF365JTP ENCSR000ARR Peak bigBed 5 Astrocyte EZH2 peaks 4 61 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8b9b8f3c-71ec-40b0-85a0-71f23356a6f9/ENCFF365JTP.bigBed\ labelFields none\ longLabel Astrocyte EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF365JTP\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469425v1 HG03516.mat chain GCA_018469425.1 HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 61 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469425.1\ parent hprcChainNetViewchain off\ priority 44\ shortLabel HG03516.mat\ subGroups view=chain sample=s044 population=afr subpop=esn hap=mat\ track chainHprcGCA_018469425v1\ type chain GCA_018469425.1\ wgEncodeRegDnaseUwHmvecdneoPeak HMVEC-dNeo Pk narrowPeak HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Peaks from ENCODE 1 61 85 255 244 170 255 249 1 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dNeo Pk\ subGroups view=a_Peaks cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdneoPeak\ wgEncodeRegDnaseUwHmvecdneoWig HMVEC-dNeo Sg bigWig 0 16586 HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE 0 61 85 255 244 170 255 249 0 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.56474\ shortLabel HMVEC-dNeo Sg\ subGroups cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdneoSignal\ track wgEncodeRegDnaseUwHmvecdneoWig\ type bigWig 0 16586\ wgEncodeReg4DnaseAllProstate Prostate (all biosamples) bigWig Avg. DNase level of 7 prostate experiments (all biosamples) 0 61 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/prostateDNase.bw\ color 140,140,140\ longLabel Avg. DNase level of 7 prostate experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 61\ shortLabel Prostate (all biosamples)\ track wgEncodeReg4DnaseAllProstate\ type bigWig\ wgEncodeReg4TxnTestisPlus Testis + bigWig Avg. + strand total RNA-seq level of 2 testis experiments (tissues and primary cells only) 0 61 139 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/testisPlus.bw\ color 139,140,140\ longLabel Avg. + strand total RNA-seq level of 2 testis experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 61\ shortLabel Testis +\ track wgEncodeReg4TxnTestisPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_rev AorticSmsToIL1b_00hr15minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse 0 62 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_rev AorticSmsToIL1b_00hr15minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse 1 62 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr15min%2c%20biol_rep3%20%28LK36%29.CNhs13578.12849-137C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr15min, biol_rep3 (LK36)_CNhs13578_12849-137C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12849-137C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr15minBiolRep3LK36_CNhs13578_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12849-137C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF594OZI BE2C CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in BE2C from ENCODE 3 (ENCFF594OZI) 0 62 237 85 255 246 170 255 0 0 0 regulation 1 color 237,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in BE2C from ENCODE 3 (ENCFF594OZI)\ parent encTfChipPk off\ shortLabel BE2C CTCF\ subGroups cellType=BE2C factor=CTCF\ track encTfChipPkENCFF594OZI\ bloodTCd30UP Blood - T CD3 - Z000000UP bigWig Methylation Atlas: Blood - T CD3 - Z000000UP 2 62 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd30UP.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD3 - Z000000UP\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 62\ shortLabel Blood - T CD3 - Z000000UP\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd30UP\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF286BFK_ENCFF617PMJ_ENCFF986LOD_ENCFF450HJC ENCFF286BFK_ENCFF617PMJ_ENCFF986LOD_ENCFF450HJC bigBed 9 + 5 Middle frontal area 46, female adult (89 years): (1) cCREs 4 62 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF286BFK_ENCFF617PMJ_ENCFF986LOD_ENCFF450HJC.bb\ longLabel Middle frontal area 46, female adult (89 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 102\ shortLabel ENCFF286BFK_ENCFF617PMJ_ENCFF986LOD_ENCFF450HJC\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_female_adult__89_years_ biosampleType=tissue donor=ENCDO707TUE dataType=typeCcres\ track ENCFF286BFK_ENCFF617PMJ_ENCFF986LOD_ENCFF450HJC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF277EOS ENCSR000AFA - strand bigWig Metanephros tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal 2 62 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/c4c12733-6b95-471e-90a5-45e05728daf1/ENCFF277EOS.bigWig\ color 92,161,153\ longLabel Metanephros tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFA - strand\ track wgEncodeReg4RnaSeq_ENCFF277EOS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF722VPL ENCSR000APN Peak bigBed 5 Fibroblast of dermis H3K27ac peak 4 62 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/69d9c951-2cfb-4eeb-93aa-d25d82ffe5d7/ENCFF722VPL.bigBed\ color 181,145,0\ longLabel Fibroblast of dermis H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APN Peak\ track wgEncodeReg4Epigenetics_ENCFF722VPL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF245GAF ENCSR000ARR Signal bigWig Astrocyte EZH2 ENCSR000ARR signal 2 62 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c272d6e4-d189-4770-b6c1-b84cda3228c5/ENCFF245GAF.bigWig\ color 155,155,18\ longLabel Astrocyte EZH2 ENCSR000ARR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ARR Signal\ track wgEncodeReg4TfChip_ENCFF245GAF\ type bigWig\ visibility full\ netHprcGCA_018469425v1 HG03516.mat netAlign GCA_018469425.1 chainHprcGCA_018469425v1 HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chain Nets 1 62 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03516.mat HG03516.pri.mat.f1_v2 (May 2021 GCA_018469425.1_HG03516.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469425.1\ parent hprcChainNetViewnet off\ priority 44\ shortLabel HG03516.mat\ subGroups view=net sample=s044 population=afr subpop=esn hap=mat\ track netHprcGCA_018469425v1\ type netAlign GCA_018469425.1 chainHprcGCA_018469425v1\ wgEncodeRegDnaseUwHmvecdadPeak HMVEC-dAd Pk narrowPeak HMVEC-dAd dermal microvascular endothelial cell DNaseI Peaks from ENCODE 1 62 85 255 246 170 255 250 1 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dAd Pk\ subGroups view=a_Peaks cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdadPeak\ wgEncodeRegDnaseUwHmvecdadWig HMVEC-dAd Sg bigWig 0 7923.4 HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE 0 62 85 255 246 170 255 250 0 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.56686\ shortLabel HMVEC-dAd Sg\ subGroups cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdadSignal\ track wgEncodeRegDnaseUwHmvecdadWig\ type bigWig 0 7923.4\ wgEncodeReg4DnaseAllSkin Skin (all biosamples) bigWig Avg. DNase level of 46 skin experiments (all biosamples) 0 62 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/skinDNase.bw\ color 127,133,209\ longLabel Avg. DNase level of 46 skin experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 62\ shortLabel Skin (all biosamples)\ track wgEncodeReg4DnaseAllSkin\ type bigWig\ wgEncodeReg4TxnTestisMinus Testis - bigWig Avg. - strand total RNA-seq level of 2 testis experiments (tissues and primary cells only) 0 62 139 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/testisMinus.bw\ color 139,140,140\ longLabel Avg. - strand total RNA-seq level of 2 testis experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 62\ shortLabel Testis -\ track wgEncodeReg4TxnTestisMinus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_fwd AorticSmsToIL1b_00hr30minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward 0 63 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_fwd AorticSmsToIL1b_00hr30minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward 1 63 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF704JHR BJ CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in BJ from ENCODE 3 (ENCFF704JHR) 0 63 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in BJ from ENCODE 3 (ENCFF704JHR)\ parent encTfChipPk off\ shortLabel BJ CTCF\ subGroups cellType=BJ factor=CTCF\ track encTfChipPkENCFF704JHR\ bloodTCd40TT Blood - T CD4 - Z000000TT bigWig Methylation Atlas: Blood - T CD4 - Z000000TT 2 63 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd40TT.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD4 - Z000000TT\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 63\ shortLabel Blood - T CD4 - Z000000TT\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd40TT\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF163NDW_ENCFF730XOV_ENCFF156YTC_ENCFF280OBE ENCFF163NDW_ENCFF730XOV_ENCFF156YTC_ENCFF280OBE bigBed 9 + 5 Middle frontal area 46, male adult (83 years): (1) cCREs 4 63 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF163NDW_ENCFF730XOV_ENCFF156YTC_ENCFF280OBE.bb\ longLabel Middle frontal area 46, male adult (83 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 110\ shortLabel ENCFF163NDW_ENCFF730XOV_ENCFF156YTC_ENCFF280OBE\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO736YJH dataType=typeCcres\ track ENCFF163NDW_ENCFF730XOV_ENCFF156YTC_ENCFF280OBE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF861FSP ENCSR000AFB + strand bigWig Liver tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 63 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/70f50029-2694-4fc6-b6a9-65af33ad4ebc/ENCFF861FSP.bigWig\ color 137,152,82\ longLabel Liver tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFB + strand\ track wgEncodeReg4RnaSeq_ENCFF861FSP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF500IPG ENCSR000APN Signal bigWig Fibroblast of dermis H3K27ac signal 2 63 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/dba697c7-e22f-4ffa-9d06-6c9d7c660bbd/ENCFF500IPG.bigWig\ color 181,145,0\ longLabel Fibroblast of dermis H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APN Signal\ track wgEncodeReg4Epigenetics_ENCFF500IPG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF029VZK ENCSR000ASE Peak bigBed 5 Fibroblast of dermis EZH2 peaks 4 63 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/faebf908-0af7-453f-b3b4-5610ca336a7d/ENCFF029VZK.bigBed\ labelFields none\ longLabel Fibroblast of dermis EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF029VZK\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469415v1 HG03516.pat chain GCA_018469415.1 HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 63 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469415.1\ parent hprcChainNetViewchain off\ priority 43\ shortLabel HG03516.pat\ subGroups view=chain sample=s043 population=afr subpop=esn hap=pat\ track chainHprcGCA_018469415v1\ type chain GCA_018469415.1\ wgEncodeRegDnaseUwHrcepicPeak HRCEpiC Pk narrowPeak HRCEpiC renal cortical epithelium DNaseI Peaks from ENCODE 1 63 85 251 255 170 253 255 1 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRCEpiC Pk\ subGroups view=a_Peaks cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrcepicPeak\ wgEncodeRegDnaseUwHrcepicWig HRCEpiC Sg bigWig 0 4920.93 HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE 0 63 85 251 255 170 253 255 0 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.58591\ shortLabel HRCEpiC Sg\ subGroups cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwHrcepicSignal\ track wgEncodeRegDnaseUwHrcepicWig\ type bigWig 0 4920.93\ wgEncodeReg4DnaseAllTestis Testis (all biosamples) bigWig Avg. DNase level of 5 testis experiments (all biosamples) 0 63 139 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/testisDNase.bw\ color 139,140,140\ longLabel Avg. DNase level of 5 testis experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 63\ shortLabel Testis (all biosamples)\ track wgEncodeReg4DnaseAllTestis\ type bigWig\ wgEncodeReg4TxnThyroidPlus Thyroid + bigWig Avg. + strand total RNA-seq level of 5 thyroid experiments (tissues and primary cells only) 0 63 27 119 58 141 187 156 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/thyroidPlus.bw\ color 27,119,58\ longLabel Avg. + strand total RNA-seq level of 5 thyroid experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 63\ shortLabel Thyroid +\ track wgEncodeReg4TxnThyroidPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_rev AorticSmsToIL1b_00hr30minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse 0 64 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_rev AorticSmsToIL1b_00hr30minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse 1 64 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep1%20%28LK37%29.CNhs13351.12654-134H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep1 (LK37)_CNhs13351_12654-134H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12654-134H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep1LK37_CNhs13351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12654-134H8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF910TER B_cell CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in B_cell from ENCODE 3 (ENCFF910TER) 0 64 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in B_cell from ENCODE 3 (ENCFF910TER)\ parent encTfChipPk off\ shortLabel B_cell CTCF\ subGroups cellType=B_cell factor=CTCF\ track encTfChipPkENCFF910TER\ bloodTCd40U7 Blood - T CD4 - Z000000U7 bigWig Methylation Atlas: Blood - T CD4 - Z000000U7 2 64 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd40U7.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD4 - Z000000U7\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 64\ shortLabel Blood - T CD4 - Z000000U7\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd40U7\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF359QRX_ENCFF878BKX_ENCFF280YLT_ENCFF433RNM ENCFF359QRX_ENCFF878BKX_ENCFF280YLT_ENCFF433RNM bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 64 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF359QRX_ENCFF878BKX_ENCFF280YLT_ENCFF433RNM.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 88\ shortLabel ENCFF359QRX_ENCFF878BKX_ENCFF280YLT_ENCFF433RNM\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO739EFE dataType=typeCcres\ track ENCFF359QRX_ENCFF878BKX_ENCFF280YLT_ENCFF433RNM\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF711ARV ENCSR000AFB - strand bigWig Liver tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 64 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/463f86fb-b28d-4141-90c7-7ebd6054a4c0/ENCFF711ARV.bigWig\ color 137,152,82\ longLabel Liver tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFB - strand\ track wgEncodeReg4RnaSeq_ENCFF711ARV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF577HZA ENCSR000APR Peak bigBed 5 Fibroblast of dermis NONE and female adult H3K4me3 peak 4 64 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/4588e307-f586-42a8-ac6e-c49ea4b7a7bf/ENCFF577HZA.bigBed\ color 255,0,0\ longLabel Fibroblast of dermis NONE and female adult H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APR Peak\ track wgEncodeReg4Epigenetics_ENCFF577HZA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF834XLX ENCSR000ASE Signal bigWig Fibroblast of dermis EZH2 ENCSR000ASE signal 2 64 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/e8f5577d-2ced-409b-949c-e4d280989576/ENCFF834XLX.bigWig\ color 127,133,209\ longLabel Fibroblast of dermis EZH2 ENCSR000ASE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASE Signal\ track wgEncodeReg4TfChip_ENCFF834XLX\ type bigWig\ visibility full\ netHprcGCA_018469415v1 HG03516.pat netAlign GCA_018469415.1 chainHprcGCA_018469415v1 HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chain Nets 1 64 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03516.pat HG03516.alt.pat.f1_v2 (May 2021 GCA_018469415.1_HG03516.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469415.1\ parent hprcChainNetViewnet off\ priority 43\ shortLabel HG03516.pat\ subGroups view=net sample=s043 population=afr subpop=esn hap=pat\ track netHprcGCA_018469415v1\ type netAlign GCA_018469415.1 chainHprcGCA_018469415v1\ wgEncodeRegDnaseUwHrePeak HRE Pk narrowPeak HRE renal epithelium DNaseI Peaks from ENCODE 1 64 85 248 255 170 251 255 1 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRE Pk\ subGroups view=a_Peaks cellType=HRE treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrePeak\ wgEncodeRegDnaseUwHreWig HRE Sg bigWig 0 6938.49 HRE renal epithelium DNaseI Signal from ENCODE 0 64 85 248 255 170 251 255 0 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.59019\ shortLabel HRE Sg\ subGroups cellType=HRE treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwHreSignal\ track wgEncodeRegDnaseUwHreWig\ type bigWig 0 6938.49\ wgEncodeReg4TxnThyroidMinus Thyroid - bigWig Avg. - strand total RNA-seq level of 5 thyroid experiments (tissues and primary cells only) 0 64 27 119 58 141 187 156 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/thyroidMinus.bw\ color 27,119,58\ longLabel Avg. - strand total RNA-seq level of 5 thyroid experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 64\ shortLabel Thyroid -\ track wgEncodeReg4TxnThyroidMinus\ type bigWig\ wgEncodeReg4DnaseAllUterus Uterus (all biosamples) bigWig Avg. DNase level of 8 uterus experiments (all biosamples) 0 64 186 111 165 220 183 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/uterusDNase.bw\ color 186,111,165\ longLabel Avg. DNase level of 8 uterus experiments (all biosamples)\ parent wgEncodeReg4Dnase off\ priority 64\ shortLabel Uterus (all biosamples)\ track wgEncodeReg4DnaseAllUterus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_fwd AorticSmsToIL1b_00hr30minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward 0 65 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_fwd AorticSmsToIL1b_00hr30minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward 1 65 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ bloodTCd40UM Blood - T CD4 - Z000000UM bigWig Methylation Atlas: Blood - T CD4 - Z000000UM 2 65 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd40UM.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD4 - Z000000UM\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 65\ shortLabel Blood - T CD4 - Z000000UM\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd40UM\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF675JFN C4-2B CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in C4-2B from ENCODE 3 (ENCFF675JFN) 0 65 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in C4-2B from ENCODE 3 (ENCFF675JFN)\ parent encTfChipPk off\ shortLabel C4-2B CTCF\ subGroups cellType=C4-2B factor=CTCF\ track encTfChipPkENCFF675JFN\ ENCFF318DDE_ENCFF914PSJ_ENCFF679HCC_ENCFF695EYC ENCFF318DDE_ENCFF914PSJ_ENCFF679HCC_ENCFF695EYC bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (1) cCREs 4 65 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF318DDE_ENCFF914PSJ_ENCFF679HCC_ENCFF695EYC.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 72\ shortLabel ENCFF318DDE_ENCFF914PSJ_ENCFF679HCC_ENCFF695EYC\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO830KFO dataType=typeCcres\ track ENCFF318DDE_ENCFF914PSJ_ENCFF679HCC_ENCFF695EYC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF340HZJ ENCSR000AFC + strand bigWig Lung tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal 2 65 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/36f4eef7-bfe4-49df-b92c-3c2a99b2c362/ENCFF340HZJ.bigWig\ color 130,163,45\ longLabel Lung tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFC + strand\ track wgEncodeReg4RnaSeq_ENCFF340HZJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF125WTJ ENCSR000APR Signal bigWig Fibroblast of dermis NONE and female adult H3K4me3 signal 2 65 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/fa7d6140-98c5-432d-9dcd-7a0d10202c89/ENCFF125WTJ.bigWig\ color 255,0,0\ longLabel Fibroblast of dermis NONE and female adult H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000APR Signal\ track wgEncodeReg4Epigenetics_ENCFF125WTJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF187XWF ENCSR000ASW Peak bigBed 5 DND-41 EZH2 peaks 4 65 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/39e5f094-cd4a-4fcb-9cda-e1f3cd733a12/ENCFF187XWF.bigBed\ labelFields none\ longLabel DND-41 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF187XWF\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469875v1 HG02622.mat chain GCA_018469875.1 HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 65 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469875.1\ parent hprcChainNetViewchain\ priority 1\ shortLabel HG02622.mat\ subGroups view=chain sample=s001 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018469875v1\ type chain GCA_018469875.1\ wgEncodeRegDnaseUwNhekPeak NHEK Pk narrowPeak NHEK epidermal keratinocyte DNaseI Peaks from ENCODE 1 65 85 238 255 170 246 255 1 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel NHEK Pk\ subGroups view=a_Peaks cellType=NHEK treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhekPeak\ wgEncodeRegDnaseUwNhekWig NHEK Sg bigWig 0 9597.75 NHEK epidermal keratinocyte DNaseI Signal from ENCODE 0 65 85 238 255 170 246 255 0 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.60559\ shortLabel NHEK Sg\ subGroups cellType=NHEK treatment=n_a tissue=skin cancer=normal\ table wgEncodeRegDnaseUwNhekSignal\ track wgEncodeRegDnaseUwNhekWig\ type bigWig 0 9597.75\ wgEncodeReg4TxnTracheaPlus Trachea + bigWig Avg. + strand total RNA-seq level of 1 trachea experiments (tissues and primary cells only) 0 65 194 123 160 224 189 207 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tracheaPlus.bw\ color 194,123,160\ longLabel Avg. + strand total RNA-seq level of 1 trachea experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 65\ shortLabel Trachea +\ track wgEncodeReg4TxnTracheaPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_rev AorticSmsToIL1b_00hr30minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse 0 66 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_rev AorticSmsToIL1b_00hr30minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse 1 66 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep2%20%28LK38%29.CNhs13371.12752-136A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep2 (LK38)_CNhs13371_12752-136A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12752-136A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep2LK38_CNhs13371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12752-136A7\ urlLabel FANTOM5 Details:\ bloodTCd80TR Blood - T CD8 - Z000000TR bigWig Methylation Atlas: Blood - T CD8 - Z000000TR 2 66 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd80TR.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD8 - Z000000TR\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 66\ shortLabel Blood - T CD8 - Z000000TR\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd80TR\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF856AUX C4-2B ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in C4-2B from ENCODE 3 (ENCFF856AUX) 0 66 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in C4-2B from ENCODE 3 (ENCFF856AUX)\ parent encTfChipPk off\ shortLabel C4-2B ZFX\ subGroups cellType=C4-2B factor=ZFX\ track encTfChipPkENCFF856AUX\ ENCFF813QPY_ENCFF393NEJ_ENCFF820MMW_ENCFF884MZR ENCFF813QPY_ENCFF393NEJ_ENCFF820MMW_ENCFF884MZR bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (1) cCREs 4 66 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF813QPY_ENCFF393NEJ_ENCFF820MMW_ENCFF884MZR.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 81\ shortLabel ENCFF813QPY_ENCFF393NEJ_ENCFF820MMW_ENCFF884MZR\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__83_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO832DBZ dataType=typeCcres\ track ENCFF813QPY_ENCFF393NEJ_ENCFF820MMW_ENCFF884MZR\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF743EXL ENCSR000AFC - strand bigWig Lung tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal 2 66 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/a29fd86e-5506-4e54-8131-22bc40fa99ac/ENCFF743EXL.bigWig\ color 130,163,45\ longLabel Lung tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFC - strand\ track wgEncodeReg4RnaSeq_ENCFF743EXL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF913MRA ENCSR000AQU Peak bigBed 5 DND-41 CTCF peak 4 66 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/70cebb64-d4a6-4066-9629-be2496300e1c/ENCFF913MRA.bigBed\ color 0,176,240\ labelFields none\ longLabel DND-41 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AQU Peak\ track wgEncodeReg4Epigenetics_ENCFF913MRA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF696DTJ ENCSR000ASW Signal bigWig DND-41 EZH2 ENCSR000ASW signal 2 66 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/814f5cee-09d8-4129-9064-1cdef9bf0f3c/ENCFF696DTJ.bigWig\ color 254,75,173\ longLabel DND-41 EZH2 ENCSR000ASW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASW Signal\ track wgEncodeReg4TfChip_ENCFF696DTJ\ type bigWig\ visibility full\ netHprcGCA_018469875v1 HG02622.mat netAlign GCA_018469875.1 chainHprcGCA_018469875v1 HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chain Nets 1 66 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02622.mat HG02622.pri.mat.f1_v2 (May 2021 GCA_018469875.1_HG02622.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469875.1\ parent hprcChainNetViewnet\ priority 1\ shortLabel HG02622.mat\ subGroups view=net sample=s001 population=afr subpop=gwd hap=mat\ track netHprcGCA_018469875v1\ type netAlign GCA_018469875.1 chainHprcGCA_018469875v1\ wgEncodeRegDnaseUwSaecPeak SAEC Pk narrowPeak SAEC small airway epithelium DNaseI Peaks from ENCODE 1 66 85 231 255 170 243 255 1 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SAEC Pk\ subGroups view=a_Peaks cellType=SAEC treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwSaecPeak\ wgEncodeRegDnaseUwSaecWig SAEC Sg bigWig 0 4884.78 SAEC small airway epithelium DNaseI Signal from ENCODE 0 66 85 231 255 170 243 255 0 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.61604\ shortLabel SAEC Sg\ subGroups cellType=SAEC treatment=n_a tissue=lung cancer=normal\ table wgEncodeRegDnaseUwSaecSignal\ track wgEncodeRegDnaseUwSaecWig\ type bigWig 0 4884.78\ wgEncodeReg4TxnTracheaMinus Trachea - bigWig Avg. - strand total RNA-seq level of 1 trachea experiments (tissues and primary cells only) 0 66 194 123 160 224 189 207 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/tracheaMinus.bw\ color 194,123,160\ longLabel Avg. - strand total RNA-seq level of 1 trachea experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 66\ shortLabel Trachea -\ track wgEncodeReg4TxnTracheaMinus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_fwd AorticSmsToIL1b_00hr30minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward 0 67 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_fwd AorticSmsToIL1b_00hr30minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward 1 67 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ bloodTCd80U5 Blood - T CD8 - Z000000U5 bigWig Methylation Atlas: Blood - T CD8 - Z000000U5 2 67 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd80U5.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD8 - Z000000U5\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 67\ shortLabel Blood - T CD8 - Z000000U5\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd80U5\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF300XXC CD14+monocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in CD14-positive_monocyte from ENCODE 3 (ENCFF300XXC) 0 67 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in CD14-positive_monocyte from ENCODE 3 (ENCFF300XXC)\ parent encTfChipPk off\ shortLabel CD14+monocyte CTCF\ subGroups cellType=CD14-positive_monocyte factor=CTCF\ track encTfChipPkENCFF300XXC\ ENCFF412TKS_ENCFF066MLC_ENCFF146LLE_ENCFF884XLS ENCFF412TKS_ENCFF066MLC_ENCFF146LLE_ENCFF884XLS bigBed 9 + 5 Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (1) cCREs 4 67 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF412TKS_ENCFF066MLC_ENCFF146LLE_ENCFF884XLS.bb\ longLabel Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 78\ shortLabel ENCFF412TKS_ENCFF066MLC_ENCFF146LLE_ENCFF884XLS\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__86_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO845GYA dataType=typeCcres\ track ENCFF412TKS_ENCFF066MLC_ENCFF146LLE_ENCFF884XLS\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF605ZUY ENCSR000AFD + strand bigWig Occipital lobe tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 67 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/8665437d-7e69-41c9-8eb0-d4623521b81f/ENCFF605ZUY.bigWig\ color 155,155,18\ longLabel Occipital lobe tissue female embryo (20 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFD + strand\ track wgEncodeReg4RnaSeq_ENCFF605ZUY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF398MEO ENCSR000AQU Signal bigWig DND-41 CTCF signal 2 67 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/2477ed55-219a-404e-ad1a-2d5887297829/ENCFF398MEO.bigWig\ color 0,176,240\ longLabel DND-41 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AQU Signal\ track wgEncodeReg4Epigenetics_ENCFF398MEO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF232NZA ENCSR000ASY Peak bigBed 5 H1 EZH2 peaks 4 67 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/84f9e073-526d-46d7-9f11-482dc471ebb5/ENCFF232NZA.bigBed\ labelFields none\ longLabel H1 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF232NZA\ type bigBed 5\ useScore 1\ visibility squish\ chainHprcGCA_018469935v1 HG02717.mat chain GCA_018469935.1 HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 67 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469935.1\ parent hprcChainNetViewchain off\ priority 3\ shortLabel HG02717.mat\ subGroups view=chain sample=s003 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018469935v1\ type chain GCA_018469935.1\ wgEncodeRegDnaseUwPrecPeak PrEC Pk narrowPeak PrEC prostate epithelium DNaseI Peaks from ENCODE 1 67 85 226 255 170 240 255 1 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel PrEC Pk\ subGroups view=a_Peaks cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ track wgEncodeRegDnaseUwPrecPeak\ wgEncodeRegDnaseUwPrecWig PrEC Sg bigWig 0 4302.39 PrEC prostate epithelium DNaseI Signal from ENCODE 0 67 85 226 255 170 240 255 0 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.62238\ shortLabel PrEC Sg\ subGroups cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ table wgEncodeRegDnaseUwPrecSignal\ track wgEncodeRegDnaseUwPrecWig\ type bigWig 0 4302.39\ wgEncodeReg4TxnUrinaryBladderPlus Urinary bladder + bigWig Avg. + strand total RNA-seq level of 2 urinary bladder experiments (tissues and primary cells only) 0 67 194 33 39 224 144 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/urinaryBladderPlus.bw\ color 194,33,39\ longLabel Avg. + strand total RNA-seq level of 2 urinary bladder experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 67\ shortLabel Urinary bladder +\ track wgEncodeReg4TxnUrinaryBladderPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_rev AorticSmsToIL1b_00hr30minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse 0 68 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_rev AorticSmsToIL1b_00hr30minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse 1 68 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr30min%2c%20biol_rep3%20%28LK39%29.CNhs13579.12850-137C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr30min, biol_rep3 (LK39)_CNhs13579_12850-137C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12850-137C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr30minBiolRep3LK39_CNhs13579_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12850-137C6\ urlLabel FANTOM5 Details:\ bloodTCd80UK Blood - T CD8 - Z000000UK bigWig Methylation Atlas: Blood - T CD8 - Z000000UK 2 68 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCd80UK.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CD8 - Z000000UK\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 68\ shortLabel Blood - T CD8 - Z000000UK\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCd80UK\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF990ZZT Caco-2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Caco-2 from ENCODE 3 (ENCFF990ZZT) 0 68 85 193 255 170 224 255 0 0 0 regulation 1 color 85,193,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in Caco-2 from ENCODE 3 (ENCFF990ZZT)\ parent encTfChipPk off\ shortLabel Caco-2 CTCF\ subGroups cellType=Caco-2 factor=CTCF\ track encTfChipPkENCFF990ZZT\ ENCFF675NNX_ENCFF220KZL_ENCFF969AJT_ENCFF345GCX ENCFF675NNX_ENCFF220KZL_ENCFF969AJT_ENCFF345GCX bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (1) cCREs 4 68 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF675NNX_ENCFF220KZL_ENCFF969AJT_ENCFF345GCX.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 74\ shortLabel ENCFF675NNX_ENCFF220KZL_ENCFF969AJT_ENCFF345GCX\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO847KYQ dataType=typeCcres\ track ENCFF675NNX_ENCFF220KZL_ENCFF969AJT_ENCFF345GCX\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF905QKV ENCSR000AFD - strand bigWig Occipital lobe tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 68 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/4f4dc58b-c3b8-4e36-add5-2cfa23baf788/ENCFF905QKV.bigWig\ color 155,155,18\ longLabel Occipital lobe tissue female embryo (20 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFD - strand\ track wgEncodeReg4RnaSeq_ENCFF905QKV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF638RIL ENCSR000AQW Peak bigBed 5 DND-41 H3K27ac peak 4 68 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/a5435b42-19c6-4381-a531-6c013ddc9969/ENCFF638RIL.bigBed\ color 181,145,0\ longLabel DND-41 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AQW Peak\ track wgEncodeReg4Epigenetics_ENCFF638RIL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF105JFX ENCSR000ASY Signal bigWig H1 EZH2 ENCSR000ASY signal 2 68 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/0545c72c-ae55-496f-9952-6360989cf486/ENCFF105JFX.bigWig\ color 118,158,101\ longLabel H1 EZH2 ENCSR000ASY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASY Signal\ track wgEncodeReg4TfChip_ENCFF105JFX\ type bigWig\ visibility full\ wgEncodeRegDnaseUwHeepicPeak HEEpiC Pk narrowPeak HEEpiC esophageal epithelium DNaseI Peaks from ENCODE 1 68 85 220 255 170 237 255 1 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HEEpiC Pk\ subGroups view=a_Peaks cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ track wgEncodeRegDnaseUwHeepicPeak\ wgEncodeRegDnaseUwHeepicWig HEEpiC Sg bigWig 0 20601.1 HEEpiC esophageal epithelium DNaseI Signal from ENCODE 0 68 85 220 255 170 237 255 0 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.632\ shortLabel HEEpiC Sg\ subGroups cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ table wgEncodeRegDnaseUwHeepicSignal\ track wgEncodeRegDnaseUwHeepicWig\ type bigWig 0 20601.1\ netHprcGCA_018469935v1 HG02717.mat netAlign GCA_018469935.1 chainHprcGCA_018469935v1 HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chain Nets 1 68 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02717.mat HG02717.pri.mat.f1_v2 (May 2021 GCA_018469935.1_HG02717.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469935.1\ parent hprcChainNetViewnet off\ priority 3\ shortLabel HG02717.mat\ subGroups view=net sample=s003 population=afr subpop=gwd hap=mat\ track netHprcGCA_018469935v1\ type netAlign GCA_018469935.1 chainHprcGCA_018469935v1\ wgEncodeReg4TxnUrinaryBladderMinus Urinary bladder - bigWig Avg. - strand total RNA-seq level of 2 urinary bladder experiments (tissues and primary cells only) 0 68 194 33 39 224 144 147 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/urinaryBladderMinus.bw\ color 194,33,39\ longLabel Avg. - strand total RNA-seq level of 2 urinary bladder experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 68\ shortLabel Urinary bladder -\ track wgEncodeReg4TxnUrinaryBladderMinus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_fwd AorticSmsToIL1b_00hr45minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward 0 69 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_fwd AorticSmsToIL1b_00hr45minBr1+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward 1 69 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ bloodTCenmemCd4417 Blood - T CenMem CD4 - Z00000417 bigWig Methylation Atlas: Blood - T CenMem CD4 - Z00000417 2 69 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCenmemCd4417.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CenMem CD4 - Z00000417\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 69\ shortLabel Blood - T CenMem CD4 - Z00000417\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCenmemCd4417\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF837RIT DOHH2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in DOHH2 from ENCODE 3 (ENCFF837RIT) 0 69 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in DOHH2 from ENCODE 3 (ENCFF837RIT)\ parent encTfChipPk off\ shortLabel DOHH2 CTCF\ subGroups cellType=DOHH2 factor=CTCF\ track encTfChipPkENCFF837RIT\ ENCFF554VOU_ENCFF100JXF_ENCFF380WZB_ENCFF812RLY ENCFF554VOU_ENCFF100JXF_ENCFF380WZB_ENCFF812RLY bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (1) cCREs 4 69 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF554VOU_ENCFF100JXF_ENCFF380WZB_ENCFF812RLY.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 73\ shortLabel ENCFF554VOU_ENCFF100JXF_ENCFF380WZB_ENCFF812RLY\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO853VGZ dataType=typeCcres\ track ENCFF554VOU_ENCFF100JXF_ENCFF380WZB_ENCFF812RLY\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF470OAY ENCSR000AFE + strand bigWig Parietal lobe tissue female embryo (24 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 69 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/bb33c69b-e345-4d82-9d76-70779fd8ae22/ENCFF470OAY.bigWig\ color 155,155,18\ longLabel Parietal lobe tissue female embryo (24 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFE + strand\ track wgEncodeReg4RnaSeq_ENCFF470OAY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF341LLL ENCSR000AQW Signal bigWig DND-41 H3K27ac signal 2 69 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/4f96c0d0-61a2-453b-bb0e-2c838c777e4a/ENCFF341LLL.bigWig\ color 181,145,0\ longLabel DND-41 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AQW Signal\ track wgEncodeReg4Epigenetics_ENCFF341LLL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF857GWB ENCSR000ASZ Peak bigBed 5 Myotube originated from skeletal muscle myoblast EZH2 peaks 4 69 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e00edaee-1748-4448-a7cd-85808dafd916/ENCFF857GWB.bigBed\ labelFields none\ longLabel Myotube originated from skeletal muscle myoblast EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF857GWB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeRegDnaseUwGm06990Peak GM06990 Pk narrowPeak GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE 1 69 85 205 255 170 230 255 1 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM06990 Pk\ subGroups view=a_Peaks cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm06990Peak\ wgEncodeRegDnaseUwGm06990Wig GM06990 Sg bigWig 0 14706.5 GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 69 85 205 255 170 230 255 0 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.65365\ shortLabel GM06990 Sg\ subGroups cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwGm06990Signal\ track wgEncodeRegDnaseUwGm06990Wig\ type bigWig 0 14706.5\ chainHprcGCA_018469955v1 HG02630.mat chain GCA_018469955.1 HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 69 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469955.1\ parent hprcChainNetViewchain off\ priority 5\ shortLabel HG02630.mat\ subGroups view=chain sample=s005 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018469955v1\ type chain GCA_018469955.1\ wgEncodeReg4TxnUterusPlus Uterus + bigWig Avg. + strand total RNA-seq level of 6 uterus experiments (tissues and primary cells only) 0 69 186 111 165 220 183 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/uterusPlus.bw\ color 186,111,165\ longLabel Avg. + strand total RNA-seq level of 6 uterus experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 69\ shortLabel Uterus +\ track wgEncodeReg4TxnUterusPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_rev AorticSmsToIL1b_00hr45minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse 0 70 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_rev AorticSmsToIL1b_00hr45minBr1- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse 1 70 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep1%20%28LK40%29.CNhs13352.12655-134H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep1 (LK40)_CNhs13352_12655-134H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12655-134H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep1LK40_CNhs13352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12655-134H9\ urlLabel FANTOM5 Details:\ bloodTCenmemCd441D Blood - T CenMem CD4 - Z0000041D bigWig Methylation Atlas: Blood - T CenMem CD4 - Z0000041D 2 70 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCenmemCd441D.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CenMem CD4 - Z0000041D\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 70\ shortLabel Blood - T CenMem CD4 - Z0000041D\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCenmemCd441D\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF397SMJ_ENCFF666VNK_ENCFF419XHK_ENCFF457ZFQ ENCFF397SMJ_ENCFF666VNK_ENCFF419XHK_ENCFF457ZFQ bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 70 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF397SMJ_ENCFF666VNK_ENCFF419XHK_ENCFF457ZFQ.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 93\ shortLabel ENCFF397SMJ_ENCFF666VNK_ENCFF419XHK_ENCFF457ZFQ\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO877NVF dataType=typeCcres\ track ENCFF397SMJ_ENCFF666VNK_ENCFF419XHK_ENCFF457ZFQ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF754STC ENCSR000AFE - strand bigWig Parietal lobe tissue female embryo (24 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 70 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/77adbbc5-3d53-4cba-a358-1de212ec4f2e/ENCFF754STC.bigWig\ color 155,155,18\ longLabel Parietal lobe tissue female embryo (24 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFE - strand\ track wgEncodeReg4RnaSeq_ENCFF754STC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF171FCA ENCSR000ARA Peak bigBed 5 DND-41 H3K4me3 peak 4 70 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/9626c17e-2437-4e80-8e7c-15e4c71b94b6/ENCFF171FCA.bigBed\ color 255,0,0\ longLabel DND-41 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ARA Peak\ track wgEncodeReg4Epigenetics_ENCFF171FCA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF786FVB ENCSR000ASZ Signal bigWig Myotube originated from skeletal muscle myoblast EZH2 ENCSR000ASZ signal 2 70 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/72412755-517a-4d2d-bef8-6d09f231800a/ENCFF786FVB.bigWig\ color 137,135,170\ longLabel Myotube originated from skeletal muscle myoblast EZH2 ENCSR000ASZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ASZ Signal\ track wgEncodeReg4TfChip_ENCFF786FVB\ type bigWig\ visibility full\ encTfChipPkENCFF897RQN GM06990 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM06990 from ENCODE 3 (ENCFF897RQN) 0 70 85 205 255 170 230 255 0 0 0 regulation 1 color 85,205,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM06990 from ENCODE 3 (ENCFF897RQN)\ parent encTfChipPk off\ shortLabel GM06990 CTCF\ subGroups cellType=GM06990 factor=CTCF\ track encTfChipPkENCFF897RQN\ wgEncodeRegDnaseUwHepg2Peak HepG2 Pk narrowPeak HepG2 hepatocellular carcinoma cell line DNaseI Peaks from ENCODE 1 70 85 198 255 170 226 255 1 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HepG2 Pk\ subGroups view=a_Peaks cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ track wgEncodeRegDnaseUwHepg2Peak\ wgEncodeRegDnaseUwHepg2Wig HepG2 Sg bigWig 0 4511.03 HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE 0 70 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.66426\ shortLabel HepG2 Sg\ subGroups cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ table wgEncodeRegDnaseUwHepg2Signal\ track wgEncodeRegDnaseUwHepg2Wig\ type bigWig 0 4511.03\ netHprcGCA_018469955v1 HG02630.mat netAlign GCA_018469955.1 chainHprcGCA_018469955v1 HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chain Nets 1 70 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02630.mat HG02630.pri.mat.f1_v2 (May 2021 GCA_018469955.1_HG02630.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469955.1\ parent hprcChainNetViewnet off\ priority 5\ shortLabel HG02630.mat\ subGroups view=net sample=s005 population=afr subpop=gwd hap=mat\ track netHprcGCA_018469955v1\ type netAlign GCA_018469955.1 chainHprcGCA_018469955v1\ wgEncodeReg4TxnUterusMinus Uterus - bigWig Avg. - strand total RNA-seq level of 6 uterus experiments (tissues and primary cells only) 0 70 186 111 165 220 183 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/uterusMinus.bw\ color 186,111,165\ longLabel Avg. - strand total RNA-seq level of 6 uterus experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 70\ shortLabel Uterus -\ track wgEncodeReg4TxnUterusMinus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_fwd AorticSmsToIL1b_00hr45minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward 0 71 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_fwd AorticSmsToIL1b_00hr45minBr2+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward 1 71 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ bloodTCenmemCd441N Blood - T CenMem CD4 - Z0000041N bigWig Methylation Atlas: Blood - T CenMem CD4 - Z0000041N 2 71 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTCenmemCd441N.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T CenMem CD4 - Z0000041N\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 71\ shortLabel Blood - T CenMem CD4 - Z0000041N\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTCenmemCd441N\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwCaco2Peak Caco-2 Pk narrowPeak Caco-2 colon adenocarcinoma cell line DNaseI Peaks from ENCODE 1 71 85 193 255 170 224 255 1 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Caco-2 Pk\ subGroups view=a_Peaks cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwCaco2Peak\ wgEncodeRegDnaseUwCaco2Wig Caco-2 Sg bigWig 0 4903.16 Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE 0 71 85 193 255 170 224 255 0 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.67125\ shortLabel Caco-2 Sg\ subGroups cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ table wgEncodeRegDnaseUwCaco2Signal\ track wgEncodeRegDnaseUwCaco2Wig\ type bigWig 0 4903.16\ ENCFF492WAE_ENCFF586MLV_ENCFF472UDH_ENCFF326PAG ENCFF492WAE_ENCFF586MLV_ENCFF472UDH_ENCFF326PAG bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (1) cCREs 4 71 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF492WAE_ENCFF586MLV_ENCFF472UDH_ENCFF326PAG.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 67\ shortLabel ENCFF492WAE_ENCFF586MLV_ENCFF472UDH_ENCFF326PAG\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__74_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO907CMO dataType=typeCcres\ track ENCFF492WAE_ENCFF586MLV_ENCFF472UDH_ENCFF326PAG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF679IIG ENCSR000AFF + strand bigWig Skeletal muscle tissue tissue female embryo (19 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 71 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/35a46133-9b1d-458b-abe2-bd5ffa036a44/ENCFF679IIG.bigWig\ color 137,135,170\ longLabel Skeletal muscle tissue tissue female embryo (19 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFF + strand\ track wgEncodeReg4RnaSeq_ENCFF679IIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF308GJB ENCSR000ARA Signal bigWig DND-41 H3K4me3 signal 2 71 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/049c5857-8bbf-43a3-884a-a52104359e44/ENCFF308GJB.bigWig\ color 255,0,0\ longLabel DND-41 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ARA Signal\ track wgEncodeReg4Epigenetics_ENCFF308GJB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF539AKL ENCSR000ATA Peak bigBed 5 Endothelial cell of umbilical vein male newborn EZH2 peaks 4 71 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0841197a-626f-4f26-8a5f-339a11263bb1/ENCFF539AKL.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein male newborn EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF539AKL\ type bigBed 5\ useScore 1\ visibility squish\ encTfChipPkENCFF329TZO GM08714 ZNF274 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in GM08714 from ENCODE 3 (ENCFF329TZO) 0 71 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in GM08714 from ENCODE 3 (ENCFF329TZO)\ parent encTfChipPk off\ shortLabel GM08714 ZNF274\ subGroups cellType=GM08714 factor=ZNF274\ track encTfChipPkENCFF329TZO\ chainHprcGCA_018470445v1 HG02572.mat chain GCA_018470445.1 HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 71 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470445.1\ parent hprcChainNetViewchain off\ priority 8\ shortLabel HG02572.mat\ subGroups view=chain sample=s008 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018470445v1\ type chain GCA_018470445.1\ wgEncodeReg4TxnVaginaPlus Vagina + bigWig Avg. + strand total RNA-seq level of 1 vagina experiments (tissues and primary cells only) 0 71 255 101 174 255 178 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/vaginaPlus.bw\ color 255,101,174\ longLabel Avg. + strand total RNA-seq level of 1 vagina experiments (tissues and primary cells only)\ parent wgEncodeReg4Txn off\ priority 71\ shortLabel Vagina +\ track wgEncodeReg4TxnVaginaPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_rev AorticSmsToIL1b_00hr45minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse 0 72 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_rev AorticSmsToIL1b_00hr45minBr2- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse 1 72 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep2%20%28LK41%29.CNhs13372.12753-136A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep2 (LK41)_CNhs13372_12753-136A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12753-136A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep2LK41_CNhs13372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12753-136A8\ urlLabel FANTOM5 Details:\ bloodTEffCd8419 Blood - T Eff CD8 - Z00000419 bigWig Methylation Atlas: Blood - T Eff CD8 - Z00000419 2 72 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffCd8419.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T Eff CD8 - Z00000419\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 72\ shortLabel Blood - T Eff CD8 - Z00000419\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffCd8419\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF068GXP_ENCFF507KAZ_ENCFF383TGX_ENCFF409LLA ENCFF068GXP_ENCFF507KAZ_ENCFF383TGX_ENCFF409LLA bigBed 9 + 5 Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs 4 72 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF068GXP_ENCFF507KAZ_ENCFF383TGX_ENCFF409LLA.bb\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 84\ shortLabel ENCFF068GXP_ENCFF507KAZ_ENCFF383TGX_ENCFF409LLA\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO915WZE dataType=typeCcres\ track ENCFF068GXP_ENCFF507KAZ_ENCFF383TGX_ENCFF409LLA\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF180QPD ENCSR000AFF - strand bigWig Skeletal muscle tissue tissue female embryo (19 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 72 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/84d6b490-a723-43e9-80af-22d116d84104/ENCFF180QPD.bigWig\ color 137,135,170\ longLabel Skeletal muscle tissue tissue female embryo (19 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFF - strand\ track wgEncodeReg4RnaSeq_ENCFF180QPD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF964XMB ENCSR000ASH Peak bigBed 5 A549 treated with 0.02% ethanol for 1 hour H3K4me3 peak 4 72 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/9841952e-1066-4811-9ee7-ee1eba156950/ENCFF964XMB.bigBed\ color 255,0,0\ longLabel A549 treated with 0.02% ethanol for 1 hour H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ASH Peak\ track wgEncodeReg4Epigenetics_ENCFF964XMB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF310GPL ENCSR000ATA Signal bigWig Endothelial cell of umbilical vein male newborn EZH2 ENCSR000ATA signal 2 72 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4ef6db71-fdb4-4020-b76b-cbfbbd01b88c/ENCFF310GPL.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein male newborn EZH2 ENCSR000ATA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATA Signal\ track wgEncodeReg4TfChip_ENCFF310GPL\ type bigWig\ visibility full\ encTfChipPkENCFF178PUI GM10266 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM10266 from ENCODE 3 (ENCFF178PUI) 0 72 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM10266 from ENCODE 3 (ENCFF178PUI)\ parent encTfChipPk off\ shortLabel GM10266 CTCF\ subGroups cellType=GM10266 factor=CTCF\ track encTfChipPkENCFF178PUI\ netHprcGCA_018470445v1 HG02572.mat netAlign GCA_018470445.1 chainHprcGCA_018470445v1 HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chain Nets 1 72 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02572.mat HG02572.pri.mat.f1_v2 (May 2021 GCA_018470445.1_HG02572.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470445.1\ parent hprcChainNetViewnet off\ priority 8\ shortLabel HG02572.mat\ subGroups view=net sample=s008 population=afr subpop=gwd hap=mat\ track netHprcGCA_018470445v1\ type netAlign GCA_018470445.1 chainHprcGCA_018470445v1\ wgEncodeRegDnaseUwSknshraPeak SK-N-SH_RA Pk narrowPeak SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Peaks from ENCODE 1 72 85 189 255 170 222 255 1 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SK-N-SH_RA Pk\ subGroups view=a_Peaks cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknshraPeak\ wgEncodeRegDnaseUwSknshraWig SK-N-SH_RA Sg bigWig 0 4488.56 SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE 0 72 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.679\ shortLabel SK-N-SH_RA Sg\ subGroups cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwSknshraSignal\ track wgEncodeRegDnaseUwSknshraWig\ type bigWig 0 4488.56\ wgEncodeReg4TxnVaginaMinus Vagina - bigWig Avg. - strand total RNA-seq level of 1 vagina experiments (tissues and primary cells only) 0 72 255 101 174 255 178 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/vaginaMinus.bw\ color 255,101,174\ longLabel Avg. - strand total RNA-seq level of 1 vagina experiments (tissues and primary cells only)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 72\ shortLabel Vagina -\ track wgEncodeReg4TxnVaginaMinus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_fwd AorticSmsToIL1b_00hr45minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward 0 73 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_fwd AorticSmsToIL1b_00hr45minBr3+ bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward 1 73 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TxnAllBloodPlus Blood + (all biosamples) bigWig Avg. + strand total RNA-seq level of 77 blood experiments (all biosamples) 0 73 254 75 173 254 165 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/bloodPlus.bw\ color 254,75,173\ longLabel Avg. + strand total RNA-seq level of 77 blood experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 73\ shortLabel Blood + (all biosamples)\ track wgEncodeReg4TxnAllBloodPlus\ type bigWig\ bloodTEffCd841F Blood - T Eff CD8 - Z0000041F bigWig Methylation Atlas: Blood - T Eff CD8 - Z0000041F 2 73 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffCd841F.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T Eff CD8 - Z0000041F\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 73\ shortLabel Blood - T Eff CD8 - Z0000041F\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffCd841F\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwCd20ro01778Peak CD20+_RO01778 Pk narrowPeak CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Peaks from ENCODE 1 73 85 183 255 170 219 255 1 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel CD20+_RO01778 Pk\ subGroups view=a_Peaks cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwCd20ro01778Peak\ wgEncodeRegDnaseUwCd20ro01778Wig CD20+_RO01778 Sg bigWig 0 1572.73 CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE 0 73 85 183 255 170 219 255 0 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.68971\ shortLabel CD20+_RO01778 Sg\ subGroups cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwCd20ro01778Signal\ track wgEncodeRegDnaseUwCd20ro01778Wig\ type bigWig 0 1572.73\ ENCFF793FUR_ENCFF220GPW_ENCFF685BLE_ENCFF754BJX ENCFF793FUR_ENCFF220GPW_ENCFF685BLE_ENCFF754BJX bigBed 9 + 5 Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (1) cCREs 4 73 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF793FUR_ENCFF220GPW_ENCFF685BLE_ENCFF754BJX.bb\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 70\ shortLabel ENCFF793FUR_ENCFF220GPW_ENCFF685BLE_ENCFF754BJX\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__86_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO997SGX dataType=typeCcres\ track ENCFF793FUR_ENCFF220GPW_ENCFF685BLE_ENCFF754BJX\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF198ZSA ENCSR000AFG + strand bigWig Skin of body tissue female embryo (24 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 73 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/2b5c5c06-0a38-4edd-8c6f-978ee8c32c82/ENCFF198ZSA.bigWig\ color 127,133,209\ longLabel Skin of body tissue female embryo (24 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFG + strand\ track wgEncodeReg4RnaSeq_ENCFF198ZSA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF068LDW ENCSR000ASH Signal bigWig A549 treated with 0.02% ethanol for 1 hour H3K4me3 signal 2 73 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/c95c2cb4-268d-45a5-81d1-8f5ca1b0f4fb/ENCFF068LDW.bigWig\ color 255,0,0\ longLabel A549 treated with 0.02% ethanol for 1 hour H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ASH Signal\ track wgEncodeReg4Epigenetics_ENCFF068LDW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF318LHU ENCSR000ATC Peak bigBed 5 HeLa-S3 EZH2 peaks 4 73 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/78199192-6afb-40da-9e1d-df9536547f1a/ENCFF318LHU.bigBed\ labelFields none\ longLabel HeLa-S3 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF318LHU\ type bigBed 5\ useScore 1\ visibility squish\ encTfChipPkENCFF751IKT GM12864 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12864 from ENCODE 3 (ENCFF751IKT) 0 73 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12864 from ENCODE 3 (ENCFF751IKT)\ parent encTfChipPk off\ shortLabel GM12864 CTCF\ subGroups cellType=GM12864 factor=CTCF\ track encTfChipPkENCFF751IKT\ chainHprcGCA_018470455v1 HG02886.mat chain GCA_018470455.1 HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 73 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470455.1\ parent hprcChainNetViewchain off\ priority 9\ shortLabel HG02886.mat\ subGroups view=chain sample=s009 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018470455v1\ type chain GCA_018470455.1\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_rev AorticSmsToIL1b_00hr45minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse 0 74 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_rev AorticSmsToIL1b_00hr45minBr3- bigWig Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse 1 74 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2000hr45min%2c%20biol_rep3%20%28LK42%29.CNhs13580.12851-137C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 00hr45min, biol_rep3 (LK42)_CNhs13580_12851-137C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12851-137C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b00hr45minBiolRep3LK42_CNhs13580_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12851-137C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TxnAllBloodMinus Blood - (all biosamples) bigWig Avg. - strand total RNA-seq level of 77 blood experiments (all biosamples) 0 74 254 75 173 254 165 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/bloodMinus.bw\ color 254,75,173\ longLabel Avg. - strand total RNA-seq level of 77 blood experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 74\ shortLabel Blood - (all biosamples)\ track wgEncodeReg4TxnAllBloodMinus\ type bigWig\ bloodTEffCd841Q Blood - T Eff CD8 - Z0000041Q bigWig Methylation Atlas: Blood - T Eff CD8 - Z0000041Q 2 74 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffCd841Q.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T Eff CD8 - Z0000041Q\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 74\ shortLabel Blood - T Eff CD8 - Z0000041Q\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffCd841Q\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF477CEG_ENCFF580GFO_ENCFF646KVN_ENCFF496PUD ENCFF477CEG_ENCFF580GFO_ENCFF646KVN_ENCFF496PUD bigBed 9 + 5 Middle frontal area 46, male adult (84 years): (1) cCREs 4 74 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF477CEG_ENCFF580GFO_ENCFF646KVN_ENCFF496PUD.bb\ longLabel Middle frontal area 46, male adult (84 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 112\ shortLabel ENCFF477CEG_ENCFF580GFO_ENCFF646KVN_ENCFF496PUD\ subGroups organ=brain view=cCREs_view simpleBiosample=middle_frontal_area_46-_male_adult__84_years_ biosampleType=tissue donor=ENCDO999WDR dataType=typeCcres\ track ENCFF477CEG_ENCFF580GFO_ENCFF646KVN_ENCFF496PUD\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF733NCQ ENCSR000AFG - strand bigWig Skin of body tissue female embryo (24 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 74 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/4a4bad89-a5db-428a-9e93-f49267bdadd2/ENCFF733NCQ.bigWig\ color 127,133,209\ longLabel Skin of body tissue female embryo (24 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFG - strand\ track wgEncodeReg4RnaSeq_ENCFF733NCQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF013PCD ENCSR000ASJ Peak bigBed 5 CD14-positive monocyte female H3K27ac peak 4 74 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/000acd93-9f3d-4712-8524-5b39e9de8e39/ENCFF013PCD.bigBed\ color 181,145,0\ longLabel CD14-positive monocyte female H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ASJ Peak\ track wgEncodeReg4Epigenetics_ENCFF013PCD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF756UYQ ENCSR000ATC Signal bigWig HeLa-S3 EZH2 ENCSR000ATC signal 2 74 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/85170544-73d7-4d24-815d-586ab99d9b8c/ENCFF756UYQ.bigWig\ color 186,111,165\ longLabel HeLa-S3 EZH2 ENCSR000ATC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATC Signal\ track wgEncodeReg4TfChip_ENCFF756UYQ\ type bigWig\ visibility full\ encTfChipPkENCFF965YZI GM12865 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12865 from ENCODE 3 (ENCFF965YZI) 0 74 85 147 255 170 201 255 0 0 0 regulation 1 color 85,147,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12865 from ENCODE 3 (ENCFF965YZI)\ parent encTfChipPk off\ shortLabel GM12865 CTCF\ subGroups cellType=GM12865 factor=CTCF\ track encTfChipPkENCFF965YZI\ netHprcGCA_018470455v1 HG02886.mat netAlign GCA_018470455.1 chainHprcGCA_018470455v1 HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chain Nets 1 74 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02886.mat HG02886.pri.mat.f1_v2 (May 2021 GCA_018470455.1_HG02886.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470455.1\ parent hprcChainNetViewnet off\ priority 9\ shortLabel HG02886.mat\ subGroups view=net sample=s009 population=afr subpop=gwd hap=mat\ track netHprcGCA_018470455v1\ type netAlign GCA_018470455.1 chainHprcGCA_018470455v1\ wgEncodeRegDnaseUwTh1Peak Th1 Pk narrowPeak Th1 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE 1 74 85 178 255 170 216 255 1 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Th1 Pk\ subGroups view=a_Peaks cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh1Peak\ wgEncodeRegDnaseUwTh1Wig Th1 Sg bigWig 0 2056.65 Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 74 85 178 255 170 216 255 0 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.69959\ shortLabel Th1 Sg\ subGroups cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwTh1Signal\ track wgEncodeRegDnaseUwTh1Wig\ type bigWig 0 2056.65\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_fwd AorticSmsToIL1b_01hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward 0 75 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_fwd AorticSmsToIL1b_01hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward 1 75 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ bloodTEffmemCd4416 Blood - T EffMem CD4 - Z00000416 bigWig Methylation Atlas: Blood - T EffMem CD4 - Z00000416 2 75 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffmemCd4416.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T EffMem CD4 - Z00000416\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 75\ shortLabel Blood - T EffMem CD4 - Z00000416\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffmemCd4416\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllBrainPlus Brain + (all biosamples) bigWig Avg. + strand total RNA-seq level of 136 brain experiments (all biosamples) 0 75 155 155 18 205 205 136 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/brainPlus.bw\ color 155,155,18\ longLabel Avg. + strand total RNA-seq level of 136 brain experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 75\ shortLabel Brain + (all biosamples)\ track wgEncodeReg4TxnAllBrainPlus\ type bigWig\ ENCFF270ENA_ENCFF935BFQ_ENCFF063VLJ_ENCFF662LGI ENCFF270ENA_ENCFF935BFQ_ENCFF063VLJ_ENCFF662LGI bigBed 9 + 5 MCF-7: (1) cCREs 4 75 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF270ENA_ENCFF935BFQ_ENCFF063VLJ_ENCFF662LGI.bb\ longLabel MCF-7: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 65\ shortLabel ENCFF270ENA_ENCFF935BFQ_ENCFF063VLJ_ENCFF662LGI\ subGroups organ=breast view=cCREs_view simpleBiosample=MCF-7 biosampleType=cell_line donor=ENCDO000AAE dataType=typeCcres\ track ENCFF270ENA_ENCFF935BFQ_ENCFF063VLJ_ENCFF662LGI\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF921RUL ENCSR000AFH + strand bigWig Spinal cord tissue female embryo (24 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 75 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/bada9ba0-19e9-47de-a94a-1648888ffb1c/ENCFF921RUL.bigWig\ color 130,141,158\ longLabel Spinal cord tissue female embryo (24 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFH + strand\ track wgEncodeReg4RnaSeq_ENCFF921RUL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF184NWF ENCSR000ASJ Signal bigWig CD14-positive monocyte female H3K27ac signal 2 75 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/f297a004-a70e-470e-9fa4-bb3409f794f6/ENCFF184NWF.bigWig\ color 181,145,0\ longLabel CD14-positive monocyte female H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ASJ Signal\ track wgEncodeReg4Epigenetics_ENCFF184NWF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF427UFV ENCSR000ATK Peak bigBed 5 H1 PHF8 peaks 4 75 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/4231ebc1-6d2e-46de-8b8c-bc6e78473a64/ENCFF427UFV.bigBed\ labelFields none\ longLabel H1 PHF8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF427UFV\ type bigBed 5\ useScore 1\ visibility squish\ encTfChipPkENCFF913EEI GM12873 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12873 from ENCODE 3 (ENCFF913EEI) 0 75 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12873 from ENCODE 3 (ENCFF913EEI)\ parent encTfChipPk off\ shortLabel GM12873 CTCF\ subGroups cellType=GM12873 factor=CTCF\ track encTfChipPkENCFF913EEI\ chainHprcGCA_018473295v1 HG03540.mat chain GCA_018473295.1 HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 75 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018473295.1\ parent hprcChainNetViewchain off\ priority 11\ shortLabel HG03540.mat\ subGroups view=chain sample=s011 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018473295v1\ type chain GCA_018473295.1\ wgEncodeRegDnaseUwTh2Peak Th2 Pk narrowPeak Th2 T-lymphocyte, helper type 2 DNaseI Peaks from ENCODE 1 75 85 176 255 170 215 255 1 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Th2 Pk\ subGroups view=a_Peaks cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh2Peak\ wgEncodeRegDnaseUwTh2Wig Th2 Sg bigWig 0 1526.14 Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE 0 75 85 176 255 170 215 255 0 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.70375\ shortLabel Th2 Sg\ subGroups cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwTh2Signal\ track wgEncodeRegDnaseUwTh2Wig\ type bigWig 0 1526.14\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_rev AorticSmsToIL1b_01hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse 0 76 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_rev AorticSmsToIL1b_01hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse 1 76 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep1%20%28LK43%29.CNhs13353.12656-134I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep1 (LK43)_CNhs13353_12656-134I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12656-134I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep1LK43_CNhs13353_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12656-134I1\ urlLabel FANTOM5 Details:\ bloodTEffmemCd441C Blood - T EffMem CD4 - Z0000041C bigWig Methylation Atlas: Blood - T EffMem CD4 - Z0000041C 2 76 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffmemCd441C.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T EffMem CD4 - Z0000041C\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 76\ shortLabel Blood - T EffMem CD4 - Z0000041C\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffmemCd441C\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllBrainMinus Brain - (all biosamples) bigWig Avg. - strand total RNA-seq level of 136 brain experiments (all biosamples) 0 76 155 155 18 205 205 136 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/brainMinus.bw\ color 155,155,18\ longLabel Avg. - strand total RNA-seq level of 136 brain experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 76\ shortLabel Brain - (all biosamples)\ track wgEncodeReg4TxnAllBrainMinus\ type bigWig\ ENCFF549MXK_ENCFF278ZAD_ENCFF085IYD_ENCFF271PWB ENCFF549MXK_ENCFF278ZAD_ENCFF085IYD_ENCFF271PWB bigBed 9 + 5 Breast epithelium, female adult (51 years): (1) cCREs 4 76 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF549MXK_ENCFF278ZAD_ENCFF085IYD_ENCFF271PWB.bb\ longLabel Breast epithelium, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 17\ shortLabel ENCFF549MXK_ENCFF278ZAD_ENCFF085IYD_ENCFF271PWB\ subGroups organ=breast view=cCREs_view simpleBiosample=breast_epithelium-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF549MXK_ENCFF278ZAD_ENCFF085IYD_ENCFF271PWB\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF529VVX ENCSR000AFH - strand bigWig Spinal cord tissue female embryo (24 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 76 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/1ce1d754-07fa-4280-b124-6094ef76cc25/ENCFF529VVX.bigWig\ color 130,141,158\ longLabel Spinal cord tissue female embryo (24 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFH - strand\ track wgEncodeReg4RnaSeq_ENCFF529VVX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF947JHS ENCSR000ASN Peak bigBed 5 CD14-positive monocyte female H3K4me3 peak 4 76 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/49ce6a01-590e-4c13-843d-a9cac173c840/ENCFF947JHS.bigBed\ color 255,0,0\ longLabel CD14-positive monocyte female H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ASN Peak\ track wgEncodeReg4Epigenetics_ENCFF947JHS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF557NCI ENCSR000ATK Signal bigWig H1 PHF8 ENCSR000ATK signal 2 76 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/737ef956-0528-4bb5-9920-2bc7b772de05/ENCFF557NCI.bigWig\ color 118,158,101\ longLabel H1 PHF8 ENCSR000ATK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATK Signal\ track wgEncodeReg4TfChip_ENCFF557NCI\ type bigWig\ visibility full\ encTfChipPkENCFF834WWA GM12874 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12874 from ENCODE 3 (ENCFF834WWA) 0 76 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12874 from ENCODE 3 (ENCFF834WWA)\ parent encTfChipPk off\ shortLabel GM12874 CTCF\ subGroups cellType=GM12874 factor=CTCF\ track encTfChipPkENCFF834WWA\ netHprcGCA_018473295v1 HG03540.mat netAlign GCA_018473295.1 chainHprcGCA_018473295v1 HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chain Nets 1 76 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03540.mat HG03540.pri.mat.f1_v2 (May 2021 GCA_018473295.1_HG03540.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018473295.1\ parent hprcChainNetViewnet off\ priority 11\ shortLabel HG03540.mat\ subGroups view=net sample=s011 population=afr subpop=gwd hap=mat\ track netHprcGCA_018473295v1\ type netAlign GCA_018473295.1 chainHprcGCA_018473295v1\ wgEncodeRegDnaseUwTh1wb54553204Peak Th1_Wb54553204 Pk narrowPeak Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE 1 76 85 173 255 170 214 255 1 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Th1_Wb54553204 Pk\ subGroups view=a_Peaks cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwTh1wb54553204Peak\ wgEncodeRegDnaseUwTh1wb54553204Wig Th1_Wb54553204 Sg bigWig 0 593.107 Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 76 85 173 255 170 214 255 0 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.70849\ shortLabel Th1_Wb54553204 Sg\ subGroups cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwTh1wb54553204Signal\ track wgEncodeRegDnaseUwTh1wb54553204Wig\ type bigWig 0 593.107\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_fwd AorticSmsToIL1b_01hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward 0 77 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_fwd AorticSmsToIL1b_01hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward 1 77 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ bloodTEffmemCd441M Blood - T EffMem CD4 - Z0000041M bigWig Methylation Atlas: Blood - T EffMem CD4 - Z0000041M 2 77 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffmemCd441M.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T EffMem CD4 - Z0000041M\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 77\ shortLabel Blood - T EffMem CD4 - Z0000041M\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffmemCd441M\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllBreastPlus Breast + (all biosamples) bigWig Avg. + strand total RNA-seq level of 6 breast experiments (all biosamples) 0 77 65 171 173 160 213 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/breastPlus.bw\ color 65,171,173\ longLabel Avg. + strand total RNA-seq level of 6 breast experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 77\ shortLabel Breast + (all biosamples)\ track wgEncodeReg4TxnAllBreastPlus\ type bigWig\ ENCFF807AUZ_ENCFF466YVQ_ENCFF317LGP_ENCFF044ORH ENCFF807AUZ_ENCFF466YVQ_ENCFF317LGP_ENCFF044ORH bigBed 9 + 5 Chondrocyte, female embryo (5 days): (1) cCREs 4 77 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF807AUZ_ENCFF466YVQ_ENCFF317LGP_ENCFF044ORH.bb\ longLabel Chondrocyte, female embryo (5 days): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 21\ shortLabel ENCFF807AUZ_ENCFF466YVQ_ENCFF317LGP_ENCFF044ORH\ subGroups organ=connective_tissue view=cCREs_view simpleBiosample=chondrocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF807AUZ_ENCFF466YVQ_ENCFF317LGP_ENCFF044ORH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF718MVN ENCSR000AFI + strand bigWig Stomach tissue female embryo (40 weeks) and male embryo (36 weeks) + strand total RNA-seq signal 2 77 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/ecc2ef97-17a6-4af2-b3f7-eddfd51fb1c4/ENCFF718MVN.bigWig\ color 145,144,99\ longLabel Stomach tissue female embryo (40 weeks) and male embryo (36 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFI + strand\ track wgEncodeReg4RnaSeq_ENCFF718MVN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF587XGD ENCSR000ASN Signal bigWig CD14-positive monocyte female H3K4me3 signal 2 77 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/9a771454-5734-4dda-93a3-c4ca5ccaa9a0/ENCFF587XGD.bigWig\ color 255,0,0\ longLabel CD14-positive monocyte female H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ASN Signal\ track wgEncodeReg4Epigenetics_ENCFF587XGD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF933NKI ENCSR000ATL Peak bigBed 5 K562 CHD4 peaks 4 77 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/ab65ef0e-7bc4-4f4f-858a-514a0adbbe8a/ENCFF933NKI.bigBed\ labelFields none\ longLabel K562 CHD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF933NKI\ type bigBed 5\ useScore 1\ visibility squish\ encTfChipPkENCFF003VDB GM12878 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in GM12878 from ENCODE 3 (ENCFF003VDB) 0 77 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in GM12878 from ENCODE 3 (ENCFF003VDB)\ parent encTfChipPk off\ shortLabel GM12878 ARID3A\ subGroups cellType=GM12878 factor=ARID3A\ track encTfChipPkENCFF003VDB\ chainHprcGCA_018503585v1 HG02818.mat chain GCA_018503585.1 HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 77 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503585.1\ parent hprcChainNetViewchain off\ priority 14\ shortLabel HG02818.mat\ subGroups view=chain sample=s014 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018503585v1\ type chain GCA_018503585.1\ wgEncodeRegDnaseUwJurkatPeak Jurkat Pk narrowPeak Jurkat T-lymphocyte acute leukemia cell line DNaseI Peaks from ENCODE 1 77 85 165 255 170 210 255 1 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Jurkat Pk\ subGroups view=a_Peaks cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwJurkatPeak\ wgEncodeRegDnaseUwJurkatWig Jurkat Sg bigWig 0 5823.31 Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE 0 77 85 165 255 170 210 255 0 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.71966\ shortLabel Jurkat Sg\ subGroups cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ table wgEncodeRegDnaseUwJurkatSignal\ track wgEncodeRegDnaseUwJurkatWig\ type bigWig 0 5823.31\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_rev AorticSmsToIL1b_01hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse 0 78 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_rev AorticSmsToIL1b_01hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse 1 78 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep2%20%28LK44%29.CNhs13373.12754-136A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep2 (LK44)_CNhs13373_12754-136A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12754-136A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep2LK44_CNhs13373_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12754-136A9\ urlLabel FANTOM5 Details:\ bloodTEffmemCd841A Blood - T EffMem CD8 - Z0000041A bigWig Methylation Atlas: Blood - T EffMem CD8 - Z0000041A 2 78 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffmemCd841A.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T EffMem CD8 - Z0000041A\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 78\ shortLabel Blood - T EffMem CD8 - Z0000041A\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffmemCd841A\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllBreastMinus Breast - (all biosamples) bigWig Avg. - strand total RNA-seq level of 6 breast experiments (all biosamples) 0 78 65 171 173 160 213 214 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/breastMinus.bw\ color 65,171,173\ longLabel Avg. - strand total RNA-seq level of 6 breast experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 78\ shortLabel Breast - (all biosamples)\ track wgEncodeReg4TxnAllBreastMinus\ type bigWig\ ENCFF573NKX_ENCFF760NUN_ENCFF919FBG_ENCFF332TNJ ENCFF573NKX_ENCFF760NUN_ENCFF919FBG_ENCFF332TNJ bigBed 9 + 5 H1: (1) cCREs 4 78 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF573NKX_ENCFF760NUN_ENCFF919FBG_ENCFF332TNJ.bb\ longLabel H1: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 37\ shortLabel ENCFF573NKX_ENCFF760NUN_ENCFF919FBG_ENCFF332TNJ\ subGroups organ=embryo view=cCREs_view simpleBiosample=H1 biosampleType=cell_line donor=ENCDO000AAW dataType=typeCcres\ track ENCFF573NKX_ENCFF760NUN_ENCFF919FBG_ENCFF332TNJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF785JVZ ENCSR000AFI - strand bigWig Stomach tissue female embryo (40 weeks) and male embryo (36 weeks) - strand total RNA-seq signal 2 78 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/95a1eeff-8a84-4aa6-b80d-4543d397d349/ENCFF785JVZ.bigWig\ color 145,144,99\ longLabel Stomach tissue female embryo (40 weeks) and male embryo (36 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFI - strand\ track wgEncodeReg4RnaSeq_ENCFF785JVZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF003LWU ENCSR000AST Peak bigBed 5 A549 treated with 100 nM dexamethasone agonist for 1 hour H3K4me3 peak 4 78 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/524f4b16-40b6-4965-be69-ac366777e319/ENCFF003LWU.bigBed\ color 255,0,0\ longLabel A549 treated with 100 nM dexamethasone agonist for 1 hour H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AST Peak\ track wgEncodeReg4Epigenetics_ENCFF003LWU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF359TYM ENCSR000ATL Signal bigWig K562 CHD4 ENCSR000ATL signal 2 78 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/c0752c60-ff68-44ba-af1f-a93908b123ef/ENCFF359TYM.bigWig\ color 254,75,173\ longLabel K562 CHD4 ENCSR000ATL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATL Signal\ track wgEncodeReg4TfChip_ENCFF359TYM\ type bigWig\ visibility full\ encTfChipPkENCFF758RQJ GM12878 ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in GM12878 from ENCODE 3 (ENCFF758RQJ) 0 78 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in GM12878 from ENCODE 3 (ENCFF758RQJ)\ parent encTfChipPk off\ shortLabel GM12878 ARNT\ subGroups cellType=GM12878 factor=ARNT\ track encTfChipPkENCFF758RQJ\ wgEncodeRegDnaseUwGm12878Peak GM12878 Pk narrowPeak GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE 1 78 85 152 255 170 203 255 1 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel GM12878 Pk\ subGroups view=a_Peaks cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwGm12878Peak\ wgEncodeRegDnaseUwGm12878Wig GM12878 Sg bigWig 0 7218.11 GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 78 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.73349\ shortLabel GM12878 Sg\ subGroups cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwGm12878Signal\ track wgEncodeRegDnaseUwGm12878Wig\ type bigWig 0 7218.11\ netHprcGCA_018503585v1 HG02818.mat netAlign GCA_018503585.1 chainHprcGCA_018503585v1 HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chain Nets 1 78 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02818.mat HG02818.pri.mat.f1_v2 (May 2021 GCA_018503585.1_HG02818.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503585.1\ parent hprcChainNetViewnet off\ priority 14\ shortLabel HG02818.mat\ subGroups view=net sample=s014 population=afr subpop=gwd hap=mat\ track netHprcGCA_018503585v1\ type netAlign GCA_018503585.1 chainHprcGCA_018503585v1\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_fwd AorticSmsToIL1b_02hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward 0 79 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_fwd AorticSmsToIL1b_02hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward 1 79 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ bloodTEffmemCd841G Blood - T EffMem CD8 - Z0000041G bigWig Methylation Atlas: Blood - T EffMem CD8 - Z0000041G 2 79 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTEffmemCd841G.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T EffMem CD8 - Z0000041G\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 79\ shortLabel Blood - T EffMem CD8 - Z0000041G\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTEffmemCd841G\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllConnectiveTissuePlus Connective tissue + (all biosamples) bigWig Avg. + strand total RNA-seq level of 3 connective tissue experiments (all biosamples) 0 79 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/connectiveTissuePlus.bw\ color 138,135,169\ longLabel Avg. + strand total RNA-seq level of 3 connective tissue experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 79\ shortLabel Connective tissue + (all biosamples)\ track wgEncodeReg4TxnAllConnectiveTissuePlus\ type bigWig\ ENCFF903ZCB_ENCFF179HBV_ENCFF988WEQ_ENCFF963CHU ENCFF903ZCB_ENCFF179HBV_ENCFF988WEQ_ENCFF963CHU bigBed 9 + 5 H9: (1) cCREs 4 79 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF903ZCB_ENCFF179HBV_ENCFF988WEQ_ENCFF963CHU.bb\ longLabel H9: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 38\ shortLabel ENCFF903ZCB_ENCFF179HBV_ENCFF988WEQ_ENCFF963CHU\ subGroups organ=embryo view=cCREs_view simpleBiosample=H9 biosampleType=cell_line donor=ENCDO222AAA dataType=typeCcres\ track ENCFF903ZCB_ENCFF179HBV_ENCFF988WEQ_ENCFF963CHU\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF112ZFT ENCSR000AFJ + strand bigWig Temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal 2 79 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/a573d7de-ee2c-41ba-b7cc-ed7c6bf2f336/ENCFF112ZFT.bigWig\ color 155,155,18\ longLabel Temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFJ + strand\ track wgEncodeReg4RnaSeq_ENCFF112ZFT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF187ZQM ENCSR000AST Signal bigWig A549 treated with 100 nM dexamethasone agonist for 1 hour H3K4me3 signal 2 79 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/b67c1407-a7ce-4608-93ee-1ced297e3006/ENCFF187ZQM.bigWig\ color 255,0,0\ longLabel A549 treated with 100 nM dexamethasone agonist for 1 hour H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AST Signal\ track wgEncodeReg4Epigenetics_ENCFF187ZQM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF758CZL ENCSR000ATM Peak bigBed 5 K562 REST peaks 4 79 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/86269ae7-16f8-4afe-b13d-04651e98ff98/ENCFF758CZL.bigBed\ labelFields none\ longLabel K562 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF758CZL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeRegDnaseUwGm12865Peak GM12865 Pk narrowPeak GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE 1 79 85 147 255 170 201 255 1 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel GM12865 Pk\ subGroups view=a_Peaks cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm12865Peak\ wgEncodeRegDnaseUwGm12865Wig GM12865 Sg bigWig 0 8525.5 GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 79 85 147 255 170 201 255 0 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.73856\ shortLabel GM12865 Sg\ subGroups cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ table wgEncodeRegDnaseUwGm12865Signal\ track wgEncodeRegDnaseUwGm12865Wig\ type bigWig 0 8525.5\ encTfChipPkENCFF096XRG GM12878 ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in GM12878 from ENCODE 3 (ENCFF096XRG) 0 79 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ASH2L in GM12878 from ENCODE 3 (ENCFF096XRG)\ parent encTfChipPk off\ shortLabel GM12878 ASH2L\ subGroups cellType=GM12878 factor=ASH2L\ track encTfChipPkENCFF096XRG\ chainHprcGCA_018504065v1 HG02723.mat chain GCA_018504065.1 HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 79 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504065.1\ parent hprcChainNetViewchain off\ priority 15\ shortLabel HG02723.mat\ subGroups view=chain sample=s015 population=afr subpop=gwd hap=mat\ track chainHprcGCA_018504065v1\ type chain GCA_018504065.1\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_rev AorticSmsToIL1b_02hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse 0 80 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_rev AorticSmsToIL1b_02hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse 1 80 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep2%20%28LK47%29.CNhs13374.12755-136B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep2 (LK47)_CNhs13374_12755-136B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12755-136B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep2LK47_CNhs13374_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12755-136B1\ urlLabel FANTOM5 Details:\ bloodTNaiveCd441E Blood - T Naive CD4 - Z0000041E bigWig Methylation Atlas: Blood - T Naive CD4 - Z0000041E 2 80 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTNaiveCd441E.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T Naive CD4 - Z0000041E\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 80\ shortLabel Blood - T Naive CD4 - Z0000041E\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTNaiveCd441E\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllConnectiveTissueMinus Connective tissue - (all biosamples) bigWig Avg. - strand total RNA-seq level of 3 connective tissue experiments (all biosamples) 0 80 138 135 169 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/connectiveTissueMinus.bw\ color 138,135,169\ longLabel Avg. - strand total RNA-seq level of 3 connective tissue experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 80\ shortLabel Connective tissue - (all biosamples)\ track wgEncodeReg4TxnAllConnectiveTissueMinus\ type bigWig\ ENCFF909KVS_ENCFF300WXD_ENCFF504UNY_ENCFF976GAM ENCFF909KVS_ENCFF300WXD_ENCFF504UNY_ENCFF976GAM bigBed 9 + 5 Endodermal cell, female embryo (5 days): (1) cCREs 4 80 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF909KVS_ENCFF300WXD_ENCFF504UNY_ENCFF976GAM.bb\ longLabel Endodermal cell, female embryo (5 days): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 25\ shortLabel ENCFF909KVS_ENCFF300WXD_ENCFF504UNY_ENCFF976GAM\ subGroups organ=embryo view=cCREs_view simpleBiosample=endodermal_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF909KVS_ENCFF300WXD_ENCFF504UNY_ENCFF976GAM\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF827RCP ENCSR000AFJ - strand bigWig Temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal 2 80 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/56a302ba-3d4f-4832-ad14-5bb2adf8b780/ENCFF827RCP.bigWig\ color 155,155,18\ longLabel Temporal lobe tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFJ - strand\ track wgEncodeReg4RnaSeq_ENCFF827RCP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF751QHO ENCSR000ATH Peak bigBed 5 Osteoblast H3K4me3 peak 4 80 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/501c9df1-16d6-42db-9a42-bd7487c94025/ENCFF751QHO.bigBed\ color 255,0,0\ longLabel Osteoblast H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ATH Peak\ track wgEncodeReg4Epigenetics_ENCFF751QHO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF366FDV ENCSR000ATM Signal bigWig K562 REST ENCSR000ATM signal 2 80 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/96a03a29-92eb-4829-bcd4-949fcfaf784f/ENCFF366FDV.bigWig\ color 254,75,173\ longLabel K562 REST ENCSR000ATM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATM Signal\ track wgEncodeReg4TfChip_ENCFF366FDV\ type bigWig\ visibility full\ encTfChipPkENCFF210HTZ GM12878 ATF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF210HTZ) 0 80 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF210HTZ)\ parent encTfChipPk off\ shortLabel GM12878 ATF2 1\ subGroups cellType=GM12878 factor=ATF2\ track encTfChipPkENCFF210HTZ\ netHprcGCA_018504065v1 HG02723.mat netAlign GCA_018504065.1 chainHprcGCA_018504065v1 HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chain Nets 1 80 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02723.mat HG02723.pri.mat.f1_v2 (May 2021 GCA_018504065.1_HG02723.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504065.1\ parent hprcChainNetViewnet off\ priority 15\ shortLabel HG02723.mat\ subGroups view=net sample=s015 population=afr subpop=gwd hap=mat\ track netHprcGCA_018504065v1\ type netAlign GCA_018504065.1 chainHprcGCA_018504065v1\ wgEncodeRegDnaseUwMonocytescd14ro01746Peak Monocyte-CD14+ Pk narrowPeak Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Peaks from ENCODE 1 80 85 135 255 170 195 255 1 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel Monocyte-CD14+ Pk\ subGroups view=a_Peaks cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Peak\ wgEncodeRegDnaseUwMonocytescd14ro01746Wig Monocyte-CD14+ Sg bigWig 0 853.111 Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE 0 80 85 135 255 170 195 255 0 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.75089\ shortLabel Monocyte-CD14+ Sg\ subGroups cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ table wgEncodeRegDnaseUwMonocytescd14ro01746Signal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Wig\ type bigWig 0 853.111\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_fwd AorticSmsToIL1b_02hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward 0 81 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_fwd AorticSmsToIL1b_02hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward 1 81 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ bloodTNaiveCd841B Blood - T Naive CD8 - Z0000041B bigWig Methylation Atlas: Blood - T Naive CD8 - Z0000041B 2 81 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTNaiveCd841B.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T Naive CD8 - Z0000041B\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 81\ shortLabel Blood - T Naive CD8 - Z0000041B\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTNaiveCd841B\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllEmbryoPlus Embryo + (all biosamples) bigWig Avg. + strand total RNA-seq level of 8 embryo experiments (all biosamples) 0 81 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/embryoPlus.bw\ color 118,158,101\ longLabel Avg. + strand total RNA-seq level of 8 embryo experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 81\ shortLabel Embryo + (all biosamples)\ track wgEncodeReg4TxnAllEmbryoPlus\ type bigWig\ ENCFF706PFS_ENCFF543KTX_ENCFF708DDX_ENCFF084YDG ENCFF706PFS_ENCFF543KTX_ENCFF708DDX_ENCFF084YDG bigBed 9 + 5 Endothelial cell, male adult (53 years): (1) cCREs 4 81 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF706PFS_ENCFF543KTX_ENCFF708DDX_ENCFF084YDG.bb\ longLabel Endothelial cell, male adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 26\ shortLabel ENCFF706PFS_ENCFF543KTX_ENCFF708DDX_ENCFF084YDG\ subGroups organ=epithelium view=cCREs_view simpleBiosample=endothelial_cell-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCcres\ track ENCFF706PFS_ENCFF543KTX_ENCFF708DDX_ENCFF084YDG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF907UHD ENCSR000AFK + strand bigWig Thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks) + strand total RNA-seq signal 2 81 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/81d36a31-aab5-4e74-9326-7600e3a25d7f/ENCFF907UHD.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFK + strand\ track wgEncodeReg4RnaSeq_ENCFF907UHD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF837VDG ENCSR000ATH Signal bigWig Osteoblast H3K4me3 signal 2 81 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/d3f06ef9-e6c1-400e-a5d2-67915497ce46/ENCFF837VDG.bigWig\ color 255,0,0\ longLabel Osteoblast H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ATH Signal\ track wgEncodeReg4Epigenetics_ENCFF837VDG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF590KQU ENCSR000ATN Peak bigBed 5 CD14-positive monocyte female CTCF peaks 4 81 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3067a8fa-2410-47ca-a4bd-b6cf8b088321/ENCFF590KQU.bigBed\ labelFields none\ longLabel CD14-positive monocyte female CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF590KQU\ type bigBed 5\ useScore 1\ visibility squish\ encTfChipPkENCFF806KKM GM12878 ATF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF806KKM) 0 81 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in GM12878 from ENCODE 3 (ENCFF806KKM)\ parent encTfChipPk off\ shortLabel GM12878 ATF2 2\ subGroups cellType=GM12878 factor=ATF2\ track encTfChipPkENCFF806KKM\ chainHprcGCA_018469925v1 HG02622.pat chain GCA_018469925.1 HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 81 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469925.1\ parent hprcChainNetViewchain off\ priority 2\ shortLabel HG02622.pat\ subGroups view=chain sample=s002 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018469925v1\ type chain GCA_018469925.1\ wgEncodeRegDnaseUwHl60Peak HL-60 Pk narrowPeak HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE 1 81 85 124 255 170 189 255 1 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HL-60 Pk\ subGroups view=a_Peaks cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwHl60Peak\ wgEncodeRegDnaseUwHl60Wig HL-60 Sg bigWig 0 5012.92 HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 81 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.76239\ shortLabel HL-60 Sg\ subGroups cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ table wgEncodeRegDnaseUwHl60Signal\ track wgEncodeRegDnaseUwHl60Wig\ type bigWig 0 5012.92\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_rev AorticSmsToIL1b_02hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse 0 82 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_rev AorticSmsToIL1b_02hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse 1 82 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep3%20%28LK48%29.CNhs13582.12853-137C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep3 (LK48)_CNhs13582_12853-137C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12853-137C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep3LK48_CNhs13582_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12853-137C9\ urlLabel FANTOM5 Details:\ bloodTNaiveCd841H Blood - T Naive CD8 - Z0000041H bigWig Methylation Atlas: Blood - T Naive CD8 - Z0000041H 2 82 255 140 0 255 197 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodTNaiveCd841H.bw\ color 255,140,0\ longLabel Methylation Atlas: Blood - T Naive CD8 - Z0000041H\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 82\ shortLabel Blood - T Naive CD8 - Z0000041H\ subGroups cellType=Blood-T dataType=Replicate\ track bloodTNaiveCd841H\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllEmbryoMinus Embryo - (all biosamples) bigWig Avg. - strand total RNA-seq level of 8 embryo experiments (all biosamples) 0 82 118 158 101 186 206 178 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/embryoMinus.bw\ color 118,158,101\ longLabel Avg. - strand total RNA-seq level of 8 embryo experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 82\ shortLabel Embryo - (all biosamples)\ track wgEncodeReg4TxnAllEmbryoMinus\ type bigWig\ ENCFF841VBI_ENCFF764HZI_ENCFF037TME_ENCFF536DEU ENCFF841VBI_ENCFF764HZI_ENCFF037TME_ENCFF536DEU bigBed 9 + 5 Esophagus squamous epithelium, male adult (37 years): (1) cCREs 4 82 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF841VBI_ENCFF764HZI_ENCFF037TME_ENCFF536DEU.bb\ longLabel Esophagus squamous epithelium, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 28\ shortLabel ENCFF841VBI_ENCFF764HZI_ENCFF037TME_ENCFF536DEU\ subGroups organ=esophagus view=cCREs_view simpleBiosample=esophagus_squamous_epithelium-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF841VBI_ENCFF764HZI_ENCFF037TME_ENCFF536DEU\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF759LPC ENCSR000AFK - strand bigWig Thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks) - strand total RNA-seq signal 2 82 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/a9ab9680-914b-4d77-a7d1-55ccd3d86e4e/ENCFF759LPC.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female embryo (37 weeks) and female embryo (40 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFK - strand\ track wgEncodeReg4RnaSeq_ENCFF759LPC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF590KQU ENCSR000ATN Peak bigBed 5 CD14-positive monocyte female CTCF peak 4 82 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3067a8fa-2410-47ca-a4bd-b6cf8b088321/ENCFF590KQU.bigBed\ color 0,176,240\ labelFields none\ longLabel CD14-positive monocyte female CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ATN Peak\ track wgEncodeReg4Epigenetics_ENCFF590KQU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF496PSJ ENCSR000ATN Signal bigWig CD14-positive monocyte female CTCF ENCSR000ATN signal 2 82 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/229e7f7e-ee06-4695-a659-11d450419070/ENCFF496PSJ.bigWig\ color 254,75,173\ longLabel CD14-positive monocyte female CTCF ENCSR000ATN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATN Signal\ track wgEncodeReg4TfChip_ENCFF496PSJ\ type bigWig\ visibility full\ encTfChipPkENCFF495PWL GM12878 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in GM12878 from ENCODE 3 (ENCFF495PWL) 0 82 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in GM12878 from ENCODE 3 (ENCFF495PWL)\ parent encTfChipPk off\ shortLabel GM12878 ATF7\ subGroups cellType=GM12878 factor=ATF7\ track encTfChipPkENCFF495PWL\ netHprcGCA_018469925v1 HG02622.pat netAlign GCA_018469925.1 chainHprcGCA_018469925v1 HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chain Nets 1 82 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02622.pat HG02622.alt.pat.f1_v2 (May 2021 GCA_018469925.1_HG02622.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469925.1\ parent hprcChainNetViewnet off\ priority 2\ shortLabel HG02622.pat\ subGroups view=net sample=s002 population=afr subpop=gwd hap=pat\ track netHprcGCA_018469925v1\ type netAlign GCA_018469925.1 chainHprcGCA_018469925v1\ wgEncodeRegDnaseUwNb4Peak NB4 Pk narrowPeak NB4 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE 1 82 85 112 255 170 183 255 1 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel NB4 Pk\ subGroups view=a_Peaks cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwNb4Peak\ wgEncodeRegDnaseUwNb4Wig NB4 Sg bigWig 0 7662.2 NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 82 85 112 255 170 183 255 0 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.77436\ shortLabel NB4 Sg\ subGroups cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ table wgEncodeRegDnaseUwNb4Signal\ track wgEncodeRegDnaseUwNb4Wig\ type bigWig 0 7662.2\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_fwd AorticSmsToIL1b_03hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward 0 83 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_fwd AorticSmsToIL1b_03hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward 1 83 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ bloodBMerged Blood B Cells Merged bigWig Methylation Atlas: Blood B Cells Merged Samples 2 83 255 165 0 255 210 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodBMerged.bw\ color 255,165,0\ longLabel Methylation Atlas: Blood B Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 83\ shortLabel Blood B Cells Merged\ subGroups cellType=Blood-B dataType=Merged\ track bloodBMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF291DQP_ENCFF879CSG_ENCFF949IKU_ENCFF181ESK ENCFF291DQP_ENCFF879CSG_ENCFF949IKU_ENCFF181ESK bigBed 9 + 5 WERI-Rb-1: (1) cCREs 4 83 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF291DQP_ENCFF879CSG_ENCFF949IKU_ENCFF181ESK.bb\ longLabel WERI-Rb-1: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 170\ shortLabel ENCFF291DQP_ENCFF879CSG_ENCFF949IKU_ENCFF181ESK\ subGroups organ=eye view=cCREs_view simpleBiosample=WERI-Rb-1 biosampleType=cell_line donor=ENCDO000ADT dataType=typeCcres\ track ENCFF291DQP_ENCFF879CSG_ENCFF949IKU_ENCFF181ESK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF967PCH ENCSR000AFL + strand bigWig Tongue tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal 2 83 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/6b6a38a0-4125-45d1-86ed-77fced0c3e66/ENCFF967PCH.bigWig\ color 130,141,158\ longLabel Tongue tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFL + strand\ track wgEncodeReg4RnaSeq_ENCFF967PCH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF496PSJ ENCSR000ATN Signal bigWig CD14-positive monocyte female CTCF signal 2 83 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/229e7f7e-ee06-4695-a659-11d450419070/ENCFF496PSJ.bigWig\ color 0,176,240\ longLabel CD14-positive monocyte female CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ATN Signal\ track wgEncodeReg4Epigenetics_ENCFF496PSJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF149IOE ENCSR000ATR Peak bigBed 5 H1 SAP30 peaks 4 83 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/e47ee24a-d173-48e5-b1b3-5322c88a66f8/ENCFF149IOE.bigBed\ labelFields none\ longLabel H1 SAP30 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF149IOE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4TxnAllEpitheliumPlus Epithelium + (all biosamples) bigWig Avg. + strand total RNA-seq level of 2 epithelium experiments (all biosamples) 0 83 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/epitheliumPlus.bw\ color 221,126,107\ longLabel Avg. + strand total RNA-seq level of 2 epithelium experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 83\ shortLabel Epithelium + (all biosamples)\ track wgEncodeReg4TxnAllEpitheliumPlus\ type bigWig\ encTfChipPkENCFF725YZH GM12878 BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in GM12878 from ENCODE 3 (ENCFF725YZH) 0 83 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BACH1 in GM12878 from ENCODE 3 (ENCFF725YZH)\ parent encTfChipPk off\ shortLabel GM12878 BACH1\ subGroups cellType=GM12878 factor=BACH1\ track encTfChipPkENCFF725YZH\ wgEncodeRegDnaseUwH7hescPeak H7-ES Pk narrowPeak H7-hESC embryonic stem cell DNaseI Peaks from ENCODE 1 83 85 93 255 170 174 255 1 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel H7-ES Pk\ subGroups view=a_Peaks cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescPeak\ wgEncodeRegDnaseUwH7hescWig H7-ES Sg bigWig 0 13035.4 H7-hESC embryonic stem cell DNaseI Signal from ENCODE 0 83 85 93 255 170 174 255 0 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.79509\ shortLabel H7-ES Sg\ subGroups cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ table wgEncodeRegDnaseUwH7hescSignal\ track wgEncodeRegDnaseUwH7hescWig\ type bigWig 0 13035.4\ chainHprcGCA_018469945v1 HG02630.pat chain GCA_018469945.1 HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 83 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018469945.1\ parent hprcChainNetViewchain off\ priority 4\ shortLabel HG02630.pat\ subGroups view=chain sample=s004 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018469945v1\ type chain GCA_018469945.1\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_rev AorticSmsToIL1b_03hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse 0 84 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_rev AorticSmsToIL1b_03hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse 1 84 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep1%20%28LK49%29.CNhs13355.12658-134I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep1 (LK49)_CNhs13355_12658-134I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12658-134I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep1LK49_CNhs13355_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12658-134I3\ urlLabel FANTOM5 Details:\ bloodBMem41J Blood - B Mem - Z0000041J bigWig Methylation Atlas: Blood - B Mem - Z0000041J 2 84 255 165 0 255 210 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodBMem41J.bw\ color 255,165,0\ longLabel Methylation Atlas: Blood - B Mem - Z0000041J\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 84\ shortLabel Blood - B Mem - Z0000041J\ subGroups cellType=Blood-B dataType=Replicate\ track bloodBMem41J\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF447YDA_ENCFF712FDJ_ENCFF109WCV_ENCFF962LOU ENCFF447YDA_ENCFF712FDJ_ENCFF109WCV_ENCFF962LOU bigBed 9 + 5 Mesothelial cell of epicardium, female embryo (5 days): (1) cCREs 4 84 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF447YDA_ENCFF712FDJ_ENCFF109WCV_ENCFF962LOU.bb\ longLabel Mesothelial cell of epicardium, female embryo (5 days): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 66\ shortLabel ENCFF447YDA_ENCFF712FDJ_ENCFF109WCV_ENCFF962LOU\ subGroups organ=heart view=cCREs_view simpleBiosample=mesothelial_cell_of_epicardium-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF447YDA_ENCFF712FDJ_ENCFF109WCV_ENCFF962LOU\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF963RNI ENCSR000AFL - strand bigWig Tongue tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal 2 84 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/f910516f-a8cc-40cc-8c1e-67fe9e47e6da/ENCFF963RNI.bigWig\ color 130,141,158\ longLabel Tongue tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFL - strand\ track wgEncodeReg4RnaSeq_ENCFF963RNI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF711VBX ENCSR000ATR Signal bigWig H1 SAP30 ENCSR000ATR signal 2 84 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/9ad52ab2-f087-412c-90fb-178991b3278a/ENCFF711VBX.bigWig\ color 118,158,101\ longLabel H1 SAP30 ENCSR000ATR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATR Signal\ track wgEncodeReg4TfChip_ENCFF711VBX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF439TSJ ENCSR000AUF Peak bigBed 5 A549 treated with 0.02% ethanol for 1 hour CTCF peak 4 84 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/60c39bb7-7c73-4312-a773-20f216599388/ENCFF439TSJ.bigBed\ color 0,176,240\ labelFields none\ longLabel A549 treated with 0.02% ethanol for 1 hour CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUF Peak\ track wgEncodeReg4Epigenetics_ENCFF439TSJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TxnAllEpitheliumMinus Epithelium - (all biosamples) bigWig Avg. - strand total RNA-seq level of 2 epithelium experiments (all biosamples) 0 84 221 126 107 238 190 181 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/epitheliumMinus.bw\ color 221,126,107\ longLabel Avg. - strand total RNA-seq level of 2 epithelium experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 84\ shortLabel Epithelium - (all biosamples)\ track wgEncodeReg4TxnAllEpitheliumMinus\ type bigWig\ encTfChipPkENCFF832YIE GM12878 BATF narrowPeak Transcription Factor ChIP-seq Peaks of BATF in GM12878 from ENCODE 3 (ENCFF832YIE) 0 84 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BATF in GM12878 from ENCODE 3 (ENCFF832YIE)\ parent encTfChipPk off\ shortLabel GM12878 BATF\ subGroups cellType=GM12878 factor=BATF\ track encTfChipPkENCFF832YIE\ wgEncodeRegDnaseUwH7hescDiffprota5dPeak H7-ES diff 5d Pk narrowPeak H7-hESC embryonic stem cell (diff 5d) DNaseI Peaks from ENCODE 1 84 85 88 255 170 171 255 1 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel H7-ES diff 5d Pk\ subGroups view=a_Peaks cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota5dPeak\ wgEncodeRegDnaseUwH7hescDiffprota5dWig H7-ES diff 5d Sg bigWig 0 5836.88 H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE 0 84 85 88 255 170 171 255 0 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.80059\ shortLabel H7-ES diff 5d Sg\ subGroups cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ table wgEncodeRegDnaseUwH7hescDiffprota5dSignal\ track wgEncodeRegDnaseUwH7hescDiffprota5dWig\ type bigWig 0 5836.88\ netHprcGCA_018469945v1 HG02630.pat netAlign GCA_018469945.1 chainHprcGCA_018469945v1 HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chain Nets 1 84 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02630.pat HG02630.alt.pat.f1_v2 (May 2021 GCA_018469945.1_HG02630.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018469945.1\ parent hprcChainNetViewnet off\ priority 4\ shortLabel HG02630.pat\ subGroups view=net sample=s004 population=afr subpop=gwd hap=pat\ track netHprcGCA_018469945v1\ type netAlign GCA_018469945.1 chainHprcGCA_018469945v1\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_fwd AorticSmsToIL1b_03hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward 0 85 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_fwd AorticSmsToIL1b_03hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward 1 85 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ bloodBMem41K Blood - B Mem - Z0000041K bigWig Methylation Atlas: Blood - B Mem - Z0000041K 2 85 255 165 0 255 210 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodBMem41K.bw\ color 255,165,0\ longLabel Methylation Atlas: Blood - B Mem - Z0000041K\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 85\ shortLabel Blood - B Mem - Z0000041K\ subGroups cellType=Blood-B dataType=Replicate\ track bloodBMem41K\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF679FKQ_ENCFF163VOI_ENCFF791CAJ_ENCFF872ERK ENCFF679FKQ_ENCFF163VOI_ENCFF791CAJ_ENCFF872ERK bigBed 9 + 5 Right atrium auricular region, female adult (51 years): (1) cCREs 4 85 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF679FKQ_ENCFF163VOI_ENCFF791CAJ_ENCFF872ERK.bb\ longLabel Right atrium auricular region, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view on\ priority 133\ shortLabel ENCFF679FKQ_ENCFF163VOI_ENCFF791CAJ_ENCFF872ERK\ subGroups organ=heart view=cCREs_view simpleBiosample=right_atrium_auricular_region-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF679FKQ_ENCFF163VOI_ENCFF791CAJ_ENCFF872ERK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF298LRD ENCSR000AFM + strand bigWig Umbilical cord tissue male embryo (20 weeks) and male embryo (31 weeks) + strand total RNA-seq signal 2 85 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/ef08ad23-2bf3-4bf5-bf65-58e3ef0c3a48/ENCFF298LRD.bigWig\ color 118,158,101\ longLabel Umbilical cord tissue male embryo (20 weeks) and male embryo (31 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFM + strand\ track wgEncodeReg4RnaSeq_ENCFF298LRD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF881NFR ENCSR000ATS Peak bigBed 5 H1 SUZ12 peaks 4 85 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/fab3738d-b992-4ce5-804b-aaf457438a4f/ENCFF881NFR.bigBed\ labelFields none\ longLabel H1 SUZ12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF881NFR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF334OFY ENCSR000AUF Signal bigWig A549 treated with 0.02% ethanol for 1 hour CTCF signal 2 85 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/4b6d912e-de63-48a6-894a-32cb8564e9ea/ENCFF334OFY.bigWig\ color 0,176,240\ longLabel A549 treated with 0.02% ethanol for 1 hour CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUF Signal\ track wgEncodeReg4Epigenetics_ENCFF334OFY\ type bigWig\ visibility full\ encTfChipPkENCFF383HAY GM12878 BCL11A narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in GM12878 from ENCODE 3 (ENCFF383HAY) 0 85 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BCL11A in GM12878 from ENCODE 3 (ENCFF383HAY)\ parent encTfChipPk off\ shortLabel GM12878 BCL11A\ subGroups cellType=GM12878 factor=BCL11A\ track encTfChipPkENCFF383HAY\ wgEncodeRegDnaseUwH7hescDiffprota14dPeak H7-ES diff 14d Pk narrowPeak H7-hESC embryonic stem cell (diff 14d) DNaseI Peaks from ENCODE 1 85 89 85 255 172 170 255 1 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel H7-ES diff 14d Pk\ subGroups view=a_Peaks cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota14dPeak\ wgEncodeRegDnaseUwH7hescDiffprota14dWig H7-ES diff 14d Sg bigWig 0 21393.7 H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE 0 85 89 85 255 172 170 255 0 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.80809\ shortLabel H7-ES diff 14d Sg\ subGroups cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ table wgEncodeRegDnaseUwH7hescDiffprota14dSignal\ track wgEncodeRegDnaseUwH7hescDiffprota14dWig\ type bigWig 0 21393.7\ wgEncodeReg4TxnAllHeartPlus Heart + (all biosamples) bigWig Avg. + strand total RNA-seq level of 37 heart experiments (all biosamples) 0 85 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/heartPlus.bw\ color 116,50,165\ longLabel Avg. + strand total RNA-seq level of 37 heart experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 85\ shortLabel Heart + (all biosamples)\ track wgEncodeReg4TxnAllHeartPlus\ type bigWig\ chainHprcGCA_018470425v1 HG02717.pat chain GCA_018470425.1 HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 85 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470425.1\ parent hprcChainNetViewchain off\ priority 6\ shortLabel HG02717.pat\ subGroups view=chain sample=s006 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018470425v1\ type chain GCA_018470425.1\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_rev AorticSmsToIL1b_03hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse 0 86 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_rev AorticSmsToIL1b_03hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse 1 86 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep2%20%28LK50%29.CNhs13375.12756-136B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep2 (LK50)_CNhs13375_12756-136B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12756-136B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep2LK50_CNhs13375_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12756-136B2\ urlLabel FANTOM5 Details:\ bloodB0TX Blood - B - Z000000TX bigWig Methylation Atlas: Blood - B - Z000000TX 2 86 255 165 0 255 210 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodB0TX.bw\ color 255,165,0\ longLabel Methylation Atlas: Blood - B - Z000000TX\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 86\ shortLabel Blood - B - Z000000TX\ subGroups cellType=Blood-B dataType=Replicate\ track bloodB0TX\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF407UXA_ENCFF119FKH_ENCFF378PDO_ENCFF170TDI ENCFF407UXA_ENCFF119FKH_ENCFF378PDO_ENCFF170TDI bigBed 9 + 5 Heart right ventricle, male adult (40 years): (1) cCREs 4 86 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF407UXA_ENCFF119FKH_ENCFF378PDO_ENCFF170TDI.bb\ longLabel Heart right ventricle, male adult (40 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 47\ shortLabel ENCFF407UXA_ENCFF119FKH_ENCFF378PDO_ENCFF170TDI\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_right_ventricle-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeCcres\ track ENCFF407UXA_ENCFF119FKH_ENCFF378PDO_ENCFF170TDI\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF413VZU ENCSR000AFM - strand bigWig Umbilical cord tissue male embryo (20 weeks) and male embryo (31 weeks) - strand total RNA-seq signal 2 86 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/8a1f8996-5862-4c7b-ba59-d98ed3a8df31/ENCFF413VZU.bigWig\ color 118,158,101\ longLabel Umbilical cord tissue male embryo (20 weeks) and male embryo (31 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFM - strand\ track wgEncodeReg4RnaSeq_ENCFF413VZU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF224RZW ENCSR000ATS Signal bigWig H1 SUZ12 ENCSR000ATS signal 2 86 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/94e77120-8bd3-4cd7-9447-c29f31634b39/ENCFF224RZW.bigWig\ color 118,158,101\ longLabel H1 SUZ12 ENCSR000ATS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATS Signal\ track wgEncodeReg4TfChip_ENCFF224RZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF331IIY ENCSR000AUI Peak bigBed 5 A549 treated with 0.02% ethanol for 1 hour H3K27ac peak 4 86 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/a2857878-99de-4cd0-b2bf-6ebfeaf850b0/ENCFF331IIY.bigBed\ color 181,145,0\ longLabel A549 treated with 0.02% ethanol for 1 hour H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUI Peak\ track wgEncodeReg4Epigenetics_ENCFF331IIY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF247MHT GM12878 BCL3 narrowPeak Transcription Factor ChIP-seq Peaks of BCL3 in GM12878 from ENCODE 3 (ENCFF247MHT) 0 86 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BCL3 in GM12878 from ENCODE 3 (ENCFF247MHT)\ parent encTfChipPk off\ shortLabel GM12878 BCL3\ subGroups cellType=GM12878 factor=BCL3\ track encTfChipPkENCFF247MHT\ wgEncodeReg4TxnAllHeartMinus Heart - (all biosamples) bigWig Avg. - strand total RNA-seq level of 37 heart experiments (all biosamples) 0 86 116 50 165 185 152 210 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/heartMinus.bw\ color 116,50,165\ longLabel Avg. - strand total RNA-seq level of 37 heart experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 86\ shortLabel Heart - (all biosamples)\ track wgEncodeReg4TxnAllHeartMinus\ type bigWig\ netHprcGCA_018470425v1 HG02717.pat netAlign GCA_018470425.1 chainHprcGCA_018470425v1 HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chain Nets 1 86 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02717.pat HG02717.alt.pat.f1_v2 (May 2021 GCA_018470425.1_HG02717.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470425.1\ parent hprcChainNetViewnet off\ priority 6\ shortLabel HG02717.pat\ subGroups view=net sample=s006 population=afr subpop=gwd hap=pat\ track netHprcGCA_018470425v1\ type netAlign GCA_018470425.1 chainHprcGCA_018470425v1\ wgEncodeRegDnaseUwRptecPeak RPTEC Pk narrowPeak RPTEC renal proximal tubule epithelium DNaseI Peaks from ENCODE 1 86 100 85 255 177 170 255 1 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel RPTEC Pk\ subGroups view=a_Peaks cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwRptecPeak\ wgEncodeRegDnaseUwRptecWig RPTEC Sg bigWig 0 22767.8 RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE 0 86 100 85 255 177 170 255 0 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.82024\ shortLabel RPTEC Sg\ subGroups cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ table wgEncodeRegDnaseUwRptecSignal\ track wgEncodeRegDnaseUwRptecWig\ type bigWig 0 22767.8\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_fwd AorticSmsToIL1b_04hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward 0 87 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_fwd AorticSmsToIL1b_04hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward 1 87 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ bloodB0UB Blood - B - Z000000UB bigWig Methylation Atlas: Blood - B - Z000000UB 2 87 255 165 0 255 210 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodB0UB.bw\ color 255,165,0\ longLabel Methylation Atlas: Blood - B - Z000000UB\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 87\ shortLabel Blood - B - Z000000UB\ subGroups cellType=Blood-B dataType=Replicate\ track bloodB0UB\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF270GCR_ENCFF654FHZ_ENCFF406YGS_ENCFF803TUM ENCFF270GCR_ENCFF654FHZ_ENCFF406YGS_ENCFF803TUM bigBed 9 + 5 Heart right ventricle, female adult (46 years): (1) cCREs 4 87 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF270GCR_ENCFF654FHZ_ENCFF406YGS_ENCFF803TUM.bb\ longLabel Heart right ventricle, female adult (46 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 45\ shortLabel ENCFF270GCR_ENCFF654FHZ_ENCFF406YGS_ENCFF803TUM\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_right_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeCcres\ track ENCFF270GCR_ENCFF654FHZ_ENCFF406YGS_ENCFF803TUM\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF172ZKT ENCSR000AFN + strand bigWig Uterus tissue female embryo (24 weeks) and female embryo (28 weeks) + strand total RNA-seq signal 2 87 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/61b85895-118d-4a6b-b8ee-e06c5d39601d/ENCFF172ZKT.bigWig\ color 186,111,165\ longLabel Uterus tissue female embryo (24 weeks) and female embryo (28 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFN + strand\ track wgEncodeReg4RnaSeq_ENCFF172ZKT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF578AQI ENCSR000ATU Peak bigBed 5 K562 CBX2 peaks 4 87 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/18/60fcccd4-031c-4f08-958c-32fd5168acce/ENCFF578AQI.bigBed\ labelFields none\ longLabel K562 CBX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF578AQI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF367MFD ENCSR000AUI Signal bigWig A549 treated with 0.02% ethanol for 1 hour H3K27ac signal 2 87 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/f31bfafe-8054-4621-897e-d92bc40c4d3d/ENCFF367MFD.bigWig\ color 181,145,0\ longLabel A549 treated with 0.02% ethanol for 1 hour H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUI Signal\ track wgEncodeReg4Epigenetics_ENCFF367MFD\ type bigWig\ visibility full\ encTfChipPkENCFF622HGF GM12878 BHLHE40 1 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF622HGF) 0 87 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF622HGF)\ parent encTfChipPk off\ shortLabel GM12878 BHLHE40 1\ subGroups cellType=GM12878 factor=BHLHE40\ track encTfChipPkENCFF622HGF\ chainHprcGCA_018470435v1 HG02572.pat chain GCA_018470435.1 HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 87 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470435.1\ parent hprcChainNetViewchain off\ priority 7\ shortLabel HG02572.pat\ subGroups view=chain sample=s007 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018470435v1\ type chain GCA_018470435.1\ wgEncodeRegDnaseUwHrpepicPeak HRPEpiC Pk narrowPeak HRPEpiC retinal pigment epithelium DNaseI Peaks from ENCODE 1 87 124 85 255 189 170 255 1 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HRPEpiC Pk\ subGroups view=a_Peaks cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHrpepicPeak\ wgEncodeRegDnaseUwHrpepicWig HRPEpiC Sg bigWig 0 32404.6 HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE 0 87 124 85 255 189 170 255 0 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.84446\ shortLabel HRPEpiC Sg\ subGroups cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ table wgEncodeRegDnaseUwHrpepicSignal\ track wgEncodeRegDnaseUwHrpepicWig\ type bigWig 0 32404.6\ wgEncodeReg4TxnAllKidneyPlus Kidney + (all biosamples) bigWig Avg. + strand total RNA-seq level of 10 kidney experiments (all biosamples) 0 87 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/kidneyPlus.bw\ color 92,161,153\ longLabel Avg. + strand total RNA-seq level of 10 kidney experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 87\ shortLabel Kidney + (all biosamples)\ track wgEncodeReg4TxnAllKidneyPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_rev AorticSmsToIL1b_04hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse 0 88 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_rev AorticSmsToIL1b_04hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse 1 88 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep1%20%28LK52%29.CNhs13682.12659-134I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep1 (LK52)_CNhs13682_12659-134I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12659-134I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep1LK52_CNhs13682_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12659-134I4\ urlLabel FANTOM5 Details:\ bloodB0UR Blood - B - Z000000UR bigWig Methylation Atlas: Blood - B - Z000000UR 2 88 255 165 0 255 210 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodB0UR.bw\ color 255,165,0\ longLabel Methylation Atlas: Blood - B - Z000000UR\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 88\ shortLabel Blood - B - Z000000UR\ subGroups cellType=Blood-B dataType=Replicate\ track bloodB0UR\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF867HAD_ENCFF152PBB_ENCFF352YYH_ENCFF252IVK ENCFF867HAD_ENCFF152PBB_ENCFF352YYH_ENCFF252IVK bigBed 9 + 5 Heart left ventricle, female adult (46 years): (1) cCREs 4 88 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF867HAD_ENCFF152PBB_ENCFF352YYH_ENCFF252IVK.bb\ longLabel Heart left ventricle, female adult (46 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 40\ shortLabel ENCFF867HAD_ENCFF152PBB_ENCFF352YYH_ENCFF252IVK\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_left_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeCcres\ track ENCFF867HAD_ENCFF152PBB_ENCFF352YYH_ENCFF252IVK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF245ODT ENCSR000AFN - strand bigWig Uterus tissue female embryo (24 weeks) and female embryo (28 weeks) - strand total RNA-seq signal 2 88 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/fc321015-da75-411f-a5fa-e2de397be34a/ENCFF245ODT.bigWig\ color 186,111,165\ longLabel Uterus tissue female embryo (24 weeks) and female embryo (28 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFN - strand\ track wgEncodeReg4RnaSeq_ENCFF245ODT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF925XCF ENCSR000ATU Signal bigWig K562 CBX2 ENCSR000ATU signal 2 88 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/cc856f5a-5b45-461f-b0a2-08bb48046299/ENCFF925XCF.bigWig\ color 254,75,173\ longLabel K562 CBX2 ENCSR000ATU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATU Signal\ track wgEncodeReg4TfChip_ENCFF925XCF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF460UYR ENCSR000AUP Peak bigBed 5 B cell female adult 27 years H3K27ac peak 4 88 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/fef02169-6884-4aff-8aab-6b3f20d63938/ENCFF460UYR.bigBed\ color 181,145,0\ longLabel B cell female adult 27 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUP Peak\ track wgEncodeReg4Epigenetics_ENCFF460UYR\ type bigBed 5\ visibility squish\ encTfChipPkENCFF370ZNL GM12878 BHLHE40 2 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF370ZNL) 0 88 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in GM12878 from ENCODE 3 (ENCFF370ZNL)\ parent encTfChipPk off\ shortLabel GM12878 BHLHE40 2\ subGroups cellType=GM12878 factor=BHLHE40\ track encTfChipPkENCFF370ZNL\ netHprcGCA_018470435v1 HG02572.pat netAlign GCA_018470435.1 chainHprcGCA_018470435v1 HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chain Nets 1 88 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02572.pat HG02572.alt.pat.f1_v2 (May 2021 GCA_018470435.1_HG02572.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470435.1\ parent hprcChainNetViewnet off\ priority 7\ shortLabel HG02572.pat\ subGroups view=net sample=s007 population=afr subpop=gwd hap=pat\ track netHprcGCA_018470435v1\ type netAlign GCA_018470435.1 chainHprcGCA_018470435v1\ wgEncodeRegDnaseUwHmvecdlyadPeak HMVEC-dLy-Ad Pk narrowPeak HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Peaks from ENCODE 1 88 133 85 255 194 170 255 1 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel HMVEC-dLy-Ad Pk\ subGroups view=a_Peaks cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyadPeak\ wgEncodeRegDnaseUwHmvecdlyadWig HMVEC-dLy-Ad Sg bigWig 0 39771.9 HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE 0 88 133 85 255 194 170 255 0 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.85388\ shortLabel HMVEC-dLy-Ad Sg\ subGroups cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ table wgEncodeRegDnaseUwHmvecdlyadSignal\ track wgEncodeRegDnaseUwHmvecdlyadWig\ type bigWig 0 39771.9\ wgEncodeReg4TxnAllKidneyMinus Kidney - (all biosamples) bigWig Avg. - strand total RNA-seq level of 10 kidney experiments (all biosamples) 0 88 92 161 153 173 208 204 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/kidneyMinus.bw\ color 92,161,153\ longLabel Avg. - strand total RNA-seq level of 10 kidney experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 88\ shortLabel Kidney - (all biosamples)\ track wgEncodeReg4TxnAllKidneyMinus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_fwd AorticSmsToIL1b_04hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward 0 89 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_fwd AorticSmsToIL1b_04hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward 1 89 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ bloodNkMerged Blood NK Cells Merged bigWig Methylation Atlas: Blood NK Cells Merged Samples 2 89 255 127 80 255 191 167 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodNkMerged.bw\ color 255,127,80\ longLabel Methylation Atlas: Blood NK Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 89\ shortLabel Blood NK Cells Merged\ subGroups cellType=Blood-NK dataType=Merged\ track bloodNkMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF315VTA_ENCFF538YZL_ENCFF346GTT_ENCFF359FNN ENCFF315VTA_ENCFF538YZL_ENCFF346GTT_ENCFF359FNN bigBed 9 + 5 Heart right ventricle, male adult (69 years): (1) cCREs 4 89 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF315VTA_ENCFF538YZL_ENCFF346GTT_ENCFF359FNN.bb\ longLabel Heart right ventricle, male adult (69 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 51\ shortLabel ENCFF315VTA_ENCFF538YZL_ENCFF346GTT_ENCFF359FNN\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_right_ventricle-_male_adult__69_years_ biosampleType=tissue donor=ENCDO477WED dataType=typeCcres\ track ENCFF315VTA_ENCFF538YZL_ENCFF346GTT_ENCFF359FNN\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF676EVQ ENCSR000AFO + strand bigWig Camera-type eye tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal 2 89 163 127 144 209 191 199 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/48059d28-a702-4baa-a322-8fe927c2da65/ENCFF676EVQ.bigWig\ color 163,127,144\ longLabel Camera-type eye tissue female embryo (20 weeks) and female embryo (24 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFO + strand\ track wgEncodeReg4RnaSeq_ENCFF676EVQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF485TBL ENCSR000ATW Peak bigBed 5 K562 CBX8 peaks 4 89 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/2b15ad42-e793-40f1-a7fd-c7845e00ab6f/ENCFF485TBL.bigBed\ labelFields none\ longLabel K562 CBX8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF485TBL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF781ZDY ENCSR000AUP Signal bigWig B cell female adult 27 years H3K27ac signal 2 89 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/f2aae459-b2bf-4d3d-b5bf-9cee361cf91b/ENCFF781ZDY.bigWig\ color 181,145,0\ longLabel B cell female adult 27 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUP Signal\ track wgEncodeReg4Epigenetics_ENCFF781ZDY\ type bigWig\ visibility full\ encTfChipPkENCFF592LPO GM12878 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in GM12878 from ENCODE 3 (ENCFF592LPO) 0 89 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in GM12878 from ENCODE 3 (ENCFF592LPO)\ parent encTfChipPk off\ shortLabel GM12878 BMI1\ subGroups cellType=GM12878 factor=BMI1\ track encTfChipPkENCFF592LPO\ wgEncodeRegDnaseUwHelas3Peak HeLa-S3 Pk narrowPeak HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Peaks from ENCODE 1 89 157 85 255 206 170 255 1 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak on\ shortLabel HeLa-S3 Pk\ subGroups view=a_Peaks cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ track wgEncodeRegDnaseUwHelas3Peak\ wgEncodeRegDnaseUwHelas3Wig HeLa-S3 Sg bigWig 0 26492 HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE 0 89 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig on\ priority 1.87897\ shortLabel HeLa-S3 Sg\ subGroups cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ table wgEncodeRegDnaseUwHelas3Signal\ track wgEncodeRegDnaseUwHelas3Wig\ type bigWig 0 26492\ chainHprcGCA_018470465v1 HG02886.pat chain GCA_018470465.1 HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 89 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018470465.1\ parent hprcChainNetViewchain off\ priority 10\ shortLabel HG02886.pat\ subGroups view=chain sample=s010 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018470465v1\ type chain GCA_018470465.1\ wgEncodeReg4TxnAllLargeIntestinePlus Large intestine + (all biosamples) bigWig Avg. + strand total RNA-seq level of 34 large intestine experiments (all biosamples) 0 89 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/largeIntestinePlus.bw\ color 86,86,36\ longLabel Avg. + strand total RNA-seq level of 34 large intestine experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 89\ shortLabel Large intestine + (all biosamples)\ track wgEncodeReg4TxnAllLargeIntestinePlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_rev AorticSmsToIL1b_04hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse 0 90 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_rev AorticSmsToIL1b_04hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse 1 90 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep2%20%28LK53%29.CNhs13376.12757-136B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep2 (LK53)_CNhs13376_12757-136B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12757-136B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep2LK53_CNhs13376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12757-136B3\ urlLabel FANTOM5 Details:\ bloodNk0TM Blood - NK - Z000000TM bigWig Methylation Atlas: Blood - NK - Z000000TM 2 90 255 127 80 255 191 167 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodNk0TM.bw\ color 255,127,80\ longLabel Methylation Atlas: Blood - NK - Z000000TM\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 90\ shortLabel Blood - NK - Z000000TM\ subGroups cellType=Blood-NK dataType=Replicate\ track bloodNk0TM\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF644JWK_ENCFF237QAL_ENCFF960KLD_ENCFF829QZW ENCFF644JWK_ENCFF237QAL_ENCFF960KLD_ENCFF829QZW bigBed 9 + 5 Left ventricle myocardium inferior, male adult (60 years): (1) cCREs 4 90 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF644JWK_ENCFF237QAL_ENCFF960KLD_ENCFF829QZW.bb\ longLabel Left ventricle myocardium inferior, male adult (60 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 62\ shortLabel ENCFF644JWK_ENCFF237QAL_ENCFF960KLD_ENCFF829QZW\ subGroups organ=heart view=cCREs_view simpleBiosample=left_ventricle_myocardium_inferior-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeCcres\ track ENCFF644JWK_ENCFF237QAL_ENCFF960KLD_ENCFF829QZW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF099HWY ENCSR000AFO - strand bigWig Camera-type eye tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal 2 90 163 127 144 209 191 199 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/c7237efc-0739-413f-9041-7902101886cc/ENCFF099HWY.bigWig\ color 163,127,144\ longLabel Camera-type eye tissue female embryo (20 weeks) and female embryo (24 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AFO - strand\ track wgEncodeReg4RnaSeq_ENCFF099HWY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF802ZED ENCSR000ATW Signal bigWig K562 CBX8 ENCSR000ATW signal 2 90 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/04f774ee-846b-4e8f-98ed-6aae5c6cf786/ENCFF802ZED.bigWig\ color 254,75,173\ longLabel K562 CBX8 ENCSR000ATW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATW Signal\ track wgEncodeReg4TfChip_ENCFF802ZED\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF506FKC ENCSR000AUV Peak bigBed 5 B cell female adult 27 years and female adult 43 years CTCF peak 4 90 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/2060f38a-0785-49d3-a155-ebd57b64f682/ENCFF506FKC.bigBed\ color 0,176,240\ labelFields none\ longLabel B cell female adult 27 years and female adult 43 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUV Peak\ track wgEncodeReg4Epigenetics_ENCFF506FKC\ type bigBed 5\ visibility squish\ encTfChipPkENCFF005JKU GM12878 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in GM12878 from ENCODE 3 (ENCFF005JKU) 0 90 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in GM12878 from ENCODE 3 (ENCFF005JKU)\ parent encTfChipPk off\ shortLabel GM12878 BRCA1\ subGroups cellType=GM12878 factor=BRCA1\ track encTfChipPkENCFF005JKU\ netHprcGCA_018470465v1 HG02886.pat netAlign GCA_018470465.1 chainHprcGCA_018470465v1 HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chain Nets 1 90 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02886.pat HG02886.alt.pat.f1_v2 (May 2021 GCA_018470465.1_HG02886.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018470465.1\ parent hprcChainNetViewnet off\ priority 10\ shortLabel HG02886.pat\ subGroups view=net sample=s010 population=afr subpop=gwd hap=pat\ track netHprcGCA_018470465v1\ type netAlign GCA_018470465.1 chainHprcGCA_018470465v1\ wgEncodeReg4TxnAllLargeIntestineMinus Large intestine - (all biosamples) bigWig Avg. - strand total RNA-seq level of 34 large intestine experiments (all biosamples) 0 90 86 86 36 170 170 145 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/largeIntestineMinus.bw\ color 86,86,36\ longLabel Avg. - strand total RNA-seq level of 34 large intestine experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 90\ shortLabel Large intestine - (all biosamples)\ track wgEncodeReg4TxnAllLargeIntestineMinus\ type bigWig\ wgEncodeRegDnaseUwSknmcPeak SK-N-MC Pk narrowPeak SK-N-MC neuroepithelioma cell line DNaseI Peaks from ENCODE 1 90 176 85 255 215 170 255 1 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel SK-N-MC Pk\ subGroups view=a_Peaks cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknmcPeak\ wgEncodeRegDnaseUwSknmcWig SK-N-MC Sg bigWig 0 5864.79 SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE 0 90 176 85 255 215 170 255 0 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.90393\ shortLabel SK-N-MC Sg\ subGroups cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwSknmcSignal\ track wgEncodeRegDnaseUwSknmcWig\ type bigWig 0 5864.79\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_fwd AorticSmsToIL1b_04hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward 0 91 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_fwd AorticSmsToIL1b_04hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward 1 91 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr3+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ bloodNk0U1 Blood - NK - Z000000U1 bigWig Methylation Atlas: Blood - NK - Z000000U1 2 91 255 127 80 255 191 167 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodNk0U1.bw\ color 255,127,80\ longLabel Methylation Atlas: Blood - NK - Z000000U1\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 91\ shortLabel Blood - NK - Z000000U1\ subGroups cellType=Blood-NK dataType=Replicate\ track bloodNk0U1\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF417JSF_ENCFF651XRK_ENCFF320IPT_ENCFF440RUS ENCFF417JSF_ENCFF651XRK_ENCFF320IPT_ENCFF440RUS bigBed 9 + 5 Heart left ventricle, female adult (53 years): (1) cCREs 4 91 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF417JSF_ENCFF651XRK_ENCFF320IPT_ENCFF440RUS.bb\ longLabel Heart left ventricle, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 41\ shortLabel ENCFF417JSF_ENCFF651XRK_ENCFF320IPT_ENCFF440RUS\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_left_ventricle-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF417JSF_ENCFF651XRK_ENCFF320IPT_ENCFF440RUS\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF018EZY ENCSR000AHH + strand bigWig Heart tissue male adult (34 years) + strand total RNA-seq signal 2 91 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/063f7976-8ec9-44e1-bf13-7beb7f9de9fd/ENCFF018EZY.bigWig\ color 116,50,165\ longLabel Heart tissue male adult (34 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AHH + strand\ track wgEncodeReg4RnaSeq_ENCFF018EZY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF934ZRG ENCSR000ATX Peak bigBed 5 K562 KDM1A peaks 4 91 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/fd1a4ef8-5817-418b-aae1-4e70a7f16c21/ENCFF934ZRG.bigBed\ labelFields none\ longLabel K562 KDM1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF934ZRG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF035DJL ENCSR000AUV Signal bigWig B cell female adult 27 years and female adult 43 years CTCF signal 2 91 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/80b6f380-4c85-41b7-ae2d-a2f94a37e0cb/ENCFF035DJL.bigWig\ color 0,176,240\ longLabel B cell female adult 27 years and female adult 43 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AUV Signal\ track wgEncodeReg4Epigenetics_ENCFF035DJL\ type bigWig\ visibility full\ encTfChipPkENCFF070SOX GM12878 CBFB narrowPeak Transcription Factor ChIP-seq Peaks of CBFB in GM12878 from ENCODE 3 (ENCFF070SOX) 0 91 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CBFB in GM12878 from ENCODE 3 (ENCFF070SOX)\ parent encTfChipPk off\ shortLabel GM12878 CBFB\ subGroups cellType=GM12878 factor=CBFB\ track encTfChipPkENCFF070SOX\ chainHprcGCA_018473315v1 HG03540.pat chain GCA_018473315.1 HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 91 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018473315.1\ parent hprcChainNetViewchain off\ priority 12\ shortLabel HG03540.pat\ subGroups view=chain sample=s012 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018473315v1\ type chain GCA_018473315.1\ wgEncodeReg4TxnAllLiverPlus Liver + (all biosamples) bigWig Avg. + strand total RNA-seq level of 11 liver experiments (all biosamples) 0 91 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/liverPlus.bw\ color 137,152,82\ longLabel Avg. + strand total RNA-seq level of 11 liver experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 91\ shortLabel Liver + (all biosamples)\ track wgEncodeReg4TxnAllLiverPlus\ type bigWig\ wgEncodeRegDnaseUwMcf7Peak MCF-7 Pk narrowPeak MCF-7 mammary adenocarcinoma cell line DNaseI Peaks from ENCODE 1 91 190 85 255 222 170 255 1 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel MCF-7 Pk\ subGroups view=a_Peaks cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Peak\ wgEncodeRegDnaseUwMcf7Wig MCF-7 Sg bigWig 0 15780.8 MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE 0 91 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.93061\ shortLabel MCF-7 Sg\ subGroups cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ table wgEncodeRegDnaseUwMcf7Signal\ track wgEncodeRegDnaseUwMcf7Wig\ type bigWig 0 15780.8\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_rev AorticSmsToIL1b_04hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse 0 92 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_04hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_rev AorticSmsToIL1b_04hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse 1 92 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2004hr%2c%20biol_rep3%20%28LK54%29.CNhs13584.12855-137D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 04hr, biol_rep3 (LK54)_CNhs13584_12855-137D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12855-137D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_04hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b04hrBiolRep3LK54_CNhs13584_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12855-137D2\ urlLabel FANTOM5 Details:\ bloodNk0UF Blood - NK - Z000000UF bigWig Methylation Atlas: Blood - NK - Z000000UF 2 92 255 127 80 255 191 167 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodNk0UF.bw\ color 255,127,80\ longLabel Methylation Atlas: Blood - NK - Z000000UF\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 92\ shortLabel Blood - NK - Z000000UF\ subGroups cellType=Blood-NK dataType=Replicate\ track bloodNk0UF\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF832GZH_ENCFF646DAW_ENCFF337EUB_ENCFF886TBW ENCFF832GZH_ENCFF646DAW_ENCFF337EUB_ENCFF886TBW bigBed 9 + 5 Right atrium auricular region, female adult (53 years): (1) cCREs 4 92 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF832GZH_ENCFF646DAW_ENCFF337EUB_ENCFF886TBW.bb\ longLabel Right atrium auricular region, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 134\ shortLabel ENCFF832GZH_ENCFF646DAW_ENCFF337EUB_ENCFF886TBW\ subGroups organ=heart view=cCREs_view simpleBiosample=right_atrium_auricular_region-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF832GZH_ENCFF646DAW_ENCFF337EUB_ENCFF886TBW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF904TSK ENCSR000AHH - strand bigWig Heart tissue male adult (34 years) - strand total RNA-seq signal 2 92 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/a53ff06e-cf0b-4e1b-89bf-c46a71380cdb/ENCFF904TSK.bigWig\ color 116,50,165\ longLabel Heart tissue male adult (34 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR000AHH - strand\ track wgEncodeReg4RnaSeq_ENCFF904TSK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF512QLB ENCSR000ATX Signal bigWig K562 KDM1A ENCSR000ATX signal 2 92 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/417e9247-a0a0-466c-8edf-55db96e86b30/ENCFF512QLB.bigWig\ color 254,75,173\ longLabel K562 KDM1A ENCSR000ATX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ATX Signal\ track wgEncodeReg4TfChip_ENCFF512QLB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF097JHH ENCSR000AVF Peak bigBed 5 A549 treated with 100 nM dexamethasone agonist for 1 hour H3K27ac peak 4 92 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/752c4a2d-8713-48da-bc4c-bed78431548c/ENCFF097JHH.bigBed\ color 181,145,0\ longLabel A549 treated with 100 nM dexamethasone agonist for 1 hour H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AVF Peak\ track wgEncodeReg4Epigenetics_ENCFF097JHH\ type bigBed 5\ visibility squish\ encTfChipPkENCFF552QOA GM12878 CBX3 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in GM12878 from ENCODE 3 (ENCFF552QOA) 0 92 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in GM12878 from ENCODE 3 (ENCFF552QOA)\ parent encTfChipPk off\ shortLabel GM12878 CBX3\ subGroups cellType=GM12878 factor=CBX3\ track encTfChipPkENCFF552QOA\ netHprcGCA_018473315v1 HG03540.pat netAlign GCA_018473315.1 chainHprcGCA_018473315v1 HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chain Nets 1 92 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03540.pat HG03540.alt.pat.f1_v2 (May 2021 GCA_018473315.1_HG03540.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018473315.1\ parent hprcChainNetViewnet off\ priority 12\ shortLabel HG03540.pat\ subGroups view=net sample=s012 population=afr subpop=gwd hap=pat\ track netHprcGCA_018473315v1\ type netAlign GCA_018473315.1 chainHprcGCA_018473315v1\ wgEncodeReg4TxnAllLiverMinus Liver - (all biosamples) bigWig Avg. - strand total RNA-seq level of 11 liver experiments (all biosamples) 0 92 137 152 82 196 203 168 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/liverMinus.bw\ color 137,152,82\ longLabel Avg. - strand total RNA-seq level of 11 liver experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 92\ shortLabel Liver - (all biosamples)\ track wgEncodeReg4TxnAllLiverMinus\ type bigWig\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrPeak MCF-7 estr 0h Pk narrowPeak MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Peaks from ENCODE 1 92 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel MCF-7 estr 0h Pk\ subGroups view=a_Peaks cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrPeak\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrWig MCF-7 estr 0h Sg bigWig 0 23308.2 MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE 0 92 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.93395\ shortLabel MCF-7 estr 0h Sg\ subGroups cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ table wgEncodeRegDnaseUwMcf7Estradiolctrl0hrSignal\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrWig\ type bigWig 0 23308.2\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_fwd AorticSmsToIL1b_05hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward 0 93 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_fwd AorticSmsToIL1b_05hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward 1 93 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ bloodMonoMacroMerged Blood Monocytes Macrophages Merged bigWig Methylation Atlas: Blood Monocytes Macrophages Merged Samples 2 93 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodMonoMacroMerged.bw\ color 244,164,96\ longLabel Methylation Atlas: Blood Monocytes Macrophages Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 93\ shortLabel Blood Monocytes Macrophages Merged\ subGroups cellType=Blood-Mono-Macro dataType=Merged\ track bloodMonoMacroMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF688CZD_ENCFF330KOM_ENCFF345XIS_ENCFF011PEP ENCFF688CZD_ENCFF330KOM_ENCFF345XIS_ENCFF011PEP bigBed 9 + 5 Heart right ventricle, male adult (61 years): (1) cCREs 4 93 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF688CZD_ENCFF330KOM_ENCFF345XIS_ENCFF011PEP.bb\ longLabel Heart right ventricle, male adult (61 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 49\ shortLabel ENCFF688CZD_ENCFF330KOM_ENCFF345XIS_ENCFF011PEP\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_right_ventricle-_male_adult__61_years_ biosampleType=tissue donor=ENCDO808ASZ dataType=typeCcres\ track ENCFF688CZD_ENCFF330KOM_ENCFF345XIS_ENCFF011PEP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF295YTA ENCSR000AUA Peak bigBed 5 K562 RNF2 peaks 4 93 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/18/e0cb4cf5-ee3a-4d42-9d28-ea4d87480c9f/ENCFF295YTA.bigBed\ labelFields none\ longLabel K562 RNF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF295YTA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF017BOZ ENCSR000AVF Signal bigWig A549 treated with 100 nM dexamethasone agonist for 1 hour H3K27ac signal 2 93 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/be9852d6-1bec-4bc5-accb-6c001d8bebb3/ENCFF017BOZ.bigWig\ color 181,145,0\ longLabel A549 treated with 100 nM dexamethasone agonist for 1 hour H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000AVF Signal\ track wgEncodeReg4Epigenetics_ENCFF017BOZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF824TCL ENCSR001HHK + strand bigWig OCI-LY7 + strand total RNA-seq signal 2 93 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/96ff38ef-3ecd-49e0-a647-f8bfc3d08201/ENCFF824TCL.bigWig\ color 254,75,173\ longLabel OCI-LY7 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR001HHK + strand\ track wgEncodeReg4RnaSeq_ENCFF824TCL\ type bigWig\ visibility full\ encTfChipPkENCFF417SVR GM12878 CBX5 narrowPeak Transcription Factor ChIP-seq Peaks of CBX5 in GM12878 from ENCODE 3 (ENCFF417SVR) 0 93 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CBX5 in GM12878 from ENCODE 3 (ENCFF417SVR)\ parent encTfChipPk off\ shortLabel GM12878 CBX5\ subGroups cellType=GM12878 factor=CBX5\ track encTfChipPkENCFF417SVR\ chainHprcGCA_018503575v1 HG02818.pat chain GCA_018503575.1 HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 93 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503575.1\ parent hprcChainNetViewchain off\ priority 13\ shortLabel HG02818.pat\ subGroups view=chain sample=s013 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018503575v1\ type chain GCA_018503575.1\ wgEncodeReg4TxnAllLungPlus Lung + (all biosamples) bigWig Avg. + strand total RNA-seq level of 24 lung experiments (all biosamples) 0 93 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/lungPlus.bw\ color 130,163,45\ longLabel Avg. + strand total RNA-seq level of 24 lung experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 93\ shortLabel Lung + (all biosamples)\ track wgEncodeReg4TxnAllLungPlus\ type bigWig\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrPeak MCF-7 estr 1h Pk narrowPeak MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Peaks from ENCODE 1 93 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel MCF-7 estr 1h Pk\ subGroups view=a_Peaks cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrPeak\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrWig MCF-7 estr 1h Sg bigWig 0 24234.6 MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE 0 93 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.93373\ shortLabel MCF-7 estr 1h Sg\ subGroups cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ table wgEncodeRegDnaseUwMcf7Estradiol100nm1hrSignal\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrWig\ type bigWig 0 24234.6\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_rev AorticSmsToIL1b_05hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse 0 94 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_rev AorticSmsToIL1b_05hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse 1 94 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep1%20%28LK55%29.CNhs13356.12660-134I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep1 (LK55)_CNhs13356_12660-134I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12660-134I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep1LK55_CNhs13356_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12660-134I5\ urlLabel FANTOM5 Details:\ bloodMono0TP Blood - Monocytes - Z000000TP bigWig Methylation Atlas: Blood - Monocytes - Z000000TP 2 94 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodMono0TP.bw\ color 244,164,96\ longLabel Methylation Atlas: Blood - Monocytes - Z000000TP\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 94\ shortLabel Blood - Monocytes - Z000000TP\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track bloodMono0TP\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF414ADM_ENCFF614FJF_ENCFF135RBK_ENCFF541CSJ ENCFF414ADM_ENCFF614FJF_ENCFF135RBK_ENCFF541CSJ bigBed 9 + 5 Heart left ventricle, female adult (59 years): (1) cCREs 4 94 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF414ADM_ENCFF614FJF_ENCFF135RBK_ENCFF541CSJ.bb\ longLabel Heart left ventricle, female adult (59 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 43\ shortLabel ENCFF414ADM_ENCFF614FJF_ENCFF135RBK_ENCFF541CSJ\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_left_ventricle-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCcres\ track ENCFF414ADM_ENCFF614FJF_ENCFF135RBK_ENCFF541CSJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF973QCP ENCSR000AUA Signal bigWig K562 RNF2 ENCSR000AUA signal 2 94 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/e262721e-117a-4706-83b8-6f70171e031c/ENCFF973QCP.bigWig\ color 254,75,173\ longLabel K562 RNF2 ENCSR000AUA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUA Signal\ track wgEncodeReg4TfChip_ENCFF973QCP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF679ZFJ ENCSR000BHV Peak bigBed 5 A549 treated with 100 nM dexamethasone agonist for 1 hour CTCF peak 4 94 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ae187f80-930e-4131-9a1d-19284dc9cc79/ENCFF679ZFJ.bigBed\ color 0,176,240\ labelFields none\ longLabel A549 treated with 100 nM dexamethasone agonist for 1 hour CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BHV Peak\ track wgEncodeReg4Epigenetics_ENCFF679ZFJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF932CMH ENCSR001HHK - strand bigWig OCI-LY7 - strand total RNA-seq signal 2 94 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/969b8902-e6a1-4087-97c3-7ad37dd16e2e/ENCFF932CMH.bigWig\ color 254,75,173\ longLabel OCI-LY7 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR001HHK - strand\ track wgEncodeReg4RnaSeq_ENCFF932CMH\ type bigWig\ visibility full\ encTfChipPkENCFF786YYI GM12878 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in GM12878 from ENCODE 3 (ENCFF786YYI) 0 94 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in GM12878 from ENCODE 3 (ENCFF786YYI)\ parent encTfChipPk off\ shortLabel GM12878 CEBPB\ subGroups cellType=GM12878 factor=CEBPB\ track encTfChipPkENCFF786YYI\ netHprcGCA_018503575v1 HG02818.pat netAlign GCA_018503575.1 chainHprcGCA_018503575v1 HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chain Nets 1 94 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02818.pat HG02818.alt.pat.f1_v2 (May 2021 GCA_018503575.1_HG02818.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503575.1\ parent hprcChainNetViewnet off\ priority 13\ shortLabel HG02818.pat\ subGroups view=net sample=s013 population=afr subpop=gwd hap=pat\ track netHprcGCA_018503575v1\ type netAlign GCA_018503575.1 chainHprcGCA_018503575v1\ wgEncodeReg4TxnAllLungMinus Lung - (all biosamples) bigWig Avg. - strand total RNA-seq level of 24 lung experiments (all biosamples) 0 94 130 163 45 192 209 150 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/lungMinus.bw\ color 130,163,45\ longLabel Avg. - strand total RNA-seq level of 24 lung experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 94\ shortLabel Lung - (all biosamples)\ track wgEncodeReg4TxnAllLungMinus\ type bigWig\ wgEncodeRegDnaseUwWerirb1Peak WERI-Rb-1 Pk narrowPeak WERI-Rb-1 retinoblastoma cell line DNaseI Peaks from ENCODE 1 94 211 85 255 233 170 255 1 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel WERI-Rb-1 Pk\ subGroups view=a_Peaks cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ track wgEncodeRegDnaseUwWerirb1Peak\ wgEncodeRegDnaseUwWerirb1Wig WERI-Rb-1 Sg bigWig 0 8726.43 WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE 0 94 211 85 255 233 170 255 0 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 1.96205\ shortLabel WERI-Rb-1 Sg\ subGroups cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ table wgEncodeRegDnaseUwWerirb1Signal\ track wgEncodeRegDnaseUwWerirb1Wig\ type bigWig 0 8726.43\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_fwd AorticSmsToIL1b_05hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward 0 95 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_fwd AorticSmsToIL1b_05hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward 1 95 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwBe2cPeak BE2_C Pk narrowPeak BE2_C neuroblastoma cell line DNaseI Peaks from ENCODE 1 95 237 85 255 246 170 255 1 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Peaks from ENCODE\ parent wgEncodeRegDnasePeak off\ shortLabel BE2_C Pk\ subGroups view=a_Peaks cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwBe2cPeak\ wgEncodeRegDnaseUwBe2cWig BE2_C Sg bigWig 0 72865.5 BE2_C neuroblastoma cell line DNaseI Signal from ENCODE 0 95 237 85 255 246 170 255 0 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseWig off\ priority 2\ shortLabel BE2_C Sg\ subGroups cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ table wgEncodeRegDnaseUwBe2cSignal\ track wgEncodeRegDnaseUwBe2cWig\ type bigWig 0 72865.5\ bloodMono0U3 Blood - Monocytes - Z000000U3 bigWig Methylation Atlas: Blood - Monocytes - Z000000U3 2 95 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodMono0U3.bw\ color 244,164,96\ longLabel Methylation Atlas: Blood - Monocytes - Z000000U3\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 95\ shortLabel Blood - Monocytes - Z000000U3\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track bloodMono0U3\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF118JST_ENCFF446ELY_ENCFF509VVM_ENCFF257ODJ ENCFF118JST_ENCFF446ELY_ENCFF509VVM_ENCFF257ODJ bigBed 9 + 5 Heart right ventricle, female adult (56 years): (1) cCREs 4 95 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF118JST_ENCFF446ELY_ENCFF509VVM_ENCFF257ODJ.bb\ longLabel Heart right ventricle, female adult (56 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 46\ shortLabel ENCFF118JST_ENCFF446ELY_ENCFF509VVM_ENCFF257ODJ\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_right_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeCcres\ track ENCFF118JST_ENCFF446ELY_ENCFF509VVM_ENCFF257ODJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF397TBJ ENCSR000AUC Peak bigBed 5 K562 SUZ12 peaks 4 95 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/de2dbc83-fe9a-474d-95a0-df4381e19b3a/ENCFF397TBJ.bigBed\ labelFields none\ longLabel K562 SUZ12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF397TBJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF951ZXL ENCSR000BHV Signal bigWig A549 treated with 100 nM dexamethasone agonist for 1 hour CTCF signal 2 95 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/9942ba5a-5420-4837-8e11-053e07f5d163/ENCFF951ZXL.bigWig\ color 0,176,240\ longLabel A549 treated with 100 nM dexamethasone agonist for 1 hour CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BHV Signal\ track wgEncodeReg4Epigenetics_ENCFF951ZXL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF819DZM ENCSR001QSI + strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (80 years) + strand total RNA-seq signal 2 95 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/8025474f-c097-4add-95d6-422c1b5e659b/ENCFF819DZM.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (80 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR001QSI + strand\ track wgEncodeReg4RnaSeq_ENCFF819DZM\ type bigWig\ visibility full\ encTfChipPkENCFF863CTN GM12878 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in GM12878 from ENCODE 3 (ENCFF863CTN) 0 95 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD1 in GM12878 from ENCODE 3 (ENCFF863CTN)\ parent encTfChipPk off\ shortLabel GM12878 CHD1\ subGroups cellType=GM12878 factor=CHD1\ track encTfChipPkENCFF863CTN\ chainHprcGCA_018504075v1 HG02723.pat chain GCA_018504075.1 HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 95 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504075.1\ parent hprcChainNetViewchain off\ priority 16\ shortLabel HG02723.pat\ subGroups view=chain sample=s016 population=afr subpop=gwd hap=pat\ track chainHprcGCA_018504075v1\ type chain GCA_018504075.1\ wgEncodeReg4TxnAllMusclePlus Muscle + (all biosamples) bigWig Avg. + strand total RNA-seq level of 26 muscle experiments (all biosamples) 0 95 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/musclePlus.bw\ color 137,135,170\ longLabel Avg. + strand total RNA-seq level of 26 muscle experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 95\ shortLabel Muscle + (all biosamples)\ track wgEncodeReg4TxnAllMusclePlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_rev AorticSmsToIL1b_05hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse 0 96 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_rev AorticSmsToIL1b_05hrBr2- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse 1 96 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep2%20%28LK56%29.CNhs13377.12758-136B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep2 (LK56)_CNhs13377_12758-136B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12758-136B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr2-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep2LK56_CNhs13377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12758-136B4\ urlLabel FANTOM5 Details:\ bloodMono0UH Blood - Monocytes - Z000000UH bigWig Methylation Atlas: Blood - Monocytes - Z000000UH 2 96 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodMono0UH.bw\ color 244,164,96\ longLabel Methylation Atlas: Blood - Monocytes - Z000000UH\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 96\ shortLabel Blood - Monocytes - Z000000UH\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track bloodMono0UH\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF122VLP_ENCFF869EMQ_ENCFF707MHB_ENCFF412TOH ENCFF122VLP_ENCFF869EMQ_ENCFF707MHB_ENCFF412TOH bigBed 9 + 5 Heart left ventricle, female adult (56 years): (1) cCREs 4 96 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF122VLP_ENCFF869EMQ_ENCFF707MHB_ENCFF412TOH.bb\ longLabel Heart left ventricle, female adult (56 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 42\ shortLabel ENCFF122VLP_ENCFF869EMQ_ENCFF707MHB_ENCFF412TOH\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_left_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeCcres\ track ENCFF122VLP_ENCFF869EMQ_ENCFF707MHB_ENCFF412TOH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF689SMA ENCSR000AUC Signal bigWig K562 SUZ12 ENCSR000AUC signal 2 96 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/fb9fc18d-5107-481b-9394-464bb67fd725/ENCFF689SMA.bigWig\ color 254,75,173\ longLabel K562 SUZ12 ENCSR000AUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUC Signal\ track wgEncodeReg4TfChip_ENCFF689SMA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF063ZXA ENCSR000BNO Peak bigBed 5 T47D treated with 0.02% dimethyl sulfoxide for 1 hour CTCF peak 4 96 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/90f50b2c-95ba-4b41-a320-8234653298f9/ENCFF063ZXA.bigBed\ color 0,176,240\ labelFields none\ longLabel T47D treated with 0.02% dimethyl sulfoxide for 1 hour CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BNO Peak\ track wgEncodeReg4Epigenetics_ENCFF063ZXA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF054IYT ENCSR001QSI - strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (80 years) - strand total RNA-seq signal 2 96 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/2f772213-b8bd-47ce-8ac7-4424c70229ac/ENCFF054IYT.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (80 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR001QSI - strand\ track wgEncodeReg4RnaSeq_ENCFF054IYT\ type bigWig\ visibility full\ encTfChipPkENCFF249SIN GM12878 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in GM12878 from ENCODE 3 (ENCFF249SIN) 0 96 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in GM12878 from ENCODE 3 (ENCFF249SIN)\ parent encTfChipPk off\ shortLabel GM12878 CHD4\ subGroups cellType=GM12878 factor=CHD4\ track encTfChipPkENCFF249SIN\ netHprcGCA_018504075v1 HG02723.pat netAlign GCA_018504075.1 chainHprcGCA_018504075v1 HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chain Nets 1 96 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02723.pat HG02723.alt.pat.f1_v2 (May 2021 GCA_018504075.1_HG02723.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504075.1\ parent hprcChainNetViewnet off\ priority 16\ shortLabel HG02723.pat\ subGroups view=net sample=s016 population=afr subpop=gwd hap=pat\ track netHprcGCA_018504075v1\ type netAlign GCA_018504075.1 chainHprcGCA_018504075v1\ wgEncodeRegDnaseUwK562Hotspot K562 Ht bigBed 6 + K562 lymphoblast chronic myeloid leukemia cell line DNaseI Hotspots from ENCODE 0 96 255 85 85 255 170 170 1 0 0 regulation 1 color 255,85,85\ longLabel K562 lymphoblast chronic myeloid leukemia cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel K562 Ht\ subGroups view=b_Hot cellType=K562 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwK562Hotspot\ type bigBed 6 +\ wgEncodeReg4TxnAllMuscleMinus Muscle - (all biosamples) bigWig Avg. - strand total RNA-seq level of 26 muscle experiments (all biosamples) 0 96 137 135 170 196 195 212 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/muscleMinus.bw\ color 137,135,170\ longLabel Avg. - strand total RNA-seq level of 26 muscle experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 96\ shortLabel Muscle - (all biosamples)\ track wgEncodeReg4TxnAllMuscleMinus\ type bigWig\ wgEncodeRegDnaseUwA549Hotspot A549 Ht bigBed 6 + A549 lung adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 97 254 93 85 254 174 170 1 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel A549 Ht\ subGroups view=b_Hot cellType=A549 treatment=n_a tissue=lung cancer=cancer\ track wgEncodeRegDnaseUwA549Hotspot\ type bigBed 6 +\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_fwd AorticSmsToIL1b_06hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward 0 97 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_fwd AorticSmsToIL1b_06hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward 1 97 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr1+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ colonMacro444 Colon - Macrophages - Z00000444 bigWig Methylation Atlas: Colon - Macrophages - Z00000444 2 97 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonMacro444.bw\ color 244,164,96\ longLabel Methylation Atlas: Colon - Macrophages - Z00000444\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 97\ shortLabel Colon - Macrophages - Z00000444\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track colonMacro444\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF700MXZ_ENCFF663EZB_ENCFF400FAA_ENCFF430LIA ENCFF700MXZ_ENCFF663EZB_ENCFF400FAA_ENCFF430LIA bigBed 9 + 5 Heart right ventricle, male adult (66 years): (1) cCREs 4 97 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF700MXZ_ENCFF663EZB_ENCFF400FAA_ENCFF430LIA.bb\ longLabel Heart right ventricle, male adult (66 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 50\ shortLabel ENCFF700MXZ_ENCFF663EZB_ENCFF400FAA_ENCFF430LIA\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_right_ventricle-_male_adult__66_years_ biosampleType=tissue donor=ENCDO926KEV dataType=typeCcres\ track ENCFF700MXZ_ENCFF663EZB_ENCFF400FAA_ENCFF430LIA\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF937OPV ENCSR000AUQ Peak bigBed 5 H1 EP300 peaks 4 97 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/16b4a0d3-12e6-4611-91c6-24a1ca50fbaf/ENCFF937OPV.bigBed\ labelFields none\ longLabel H1 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF937OPV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF931VND ENCSR000BNO Signal bigWig T47D treated with 0.02% dimethyl sulfoxide for 1 hour CTCF signal 2 97 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/06cb8a4d-fb1e-40ff-8d80-136ca9c2ae39/ENCFF931VND.bigWig\ color 0,176,240\ longLabel T47D treated with 0.02% dimethyl sulfoxide for 1 hour CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BNO Signal\ track wgEncodeReg4Epigenetics_ENCFF931VND\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF357VZF ENCSR003BTD + strand bigWig Adrenal gland tissue female adult (47 years) + strand total RNA-seq signal 2 97 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/663fd79a-336c-44ae-b080-af4202177029/ENCFF357VZF.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR003BTD + strand\ track wgEncodeReg4RnaSeq_ENCFF357VZF\ type bigWig\ visibility full\ encTfChipPkENCFF091YID GM12878 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in GM12878 from ENCODE 3 (ENCFF091YID) 0 97 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CREM in GM12878 from ENCODE 3 (ENCFF091YID)\ parent encTfChipPk off\ shortLabel GM12878 CREM\ subGroups cellType=GM12878 factor=CREM\ track encTfChipPkENCFF091YID\ chainHprcGCA_018504665v1 NA21309.pat chain GCA_018504665.1 NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 97 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504665.1\ parent hprcChainNetViewchain off\ priority 86\ shortLabel NA21309.pat\ subGroups view=chain sample=s086 population=other subpop=hapmap hap=pat\ track chainHprcGCA_018504665v1\ type chain GCA_018504665.1\ wgEncodeReg4TxnAllPancreasPlus Pancreas + (all biosamples) bigWig Avg. + strand total RNA-seq level of 11 pancreas experiments (all biosamples) 0 97 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/pancreasPlus.bw\ color 175,100,41\ longLabel Avg. + strand total RNA-seq level of 11 pancreas experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 97\ shortLabel Pancreas + (all biosamples)\ track wgEncodeReg4TxnAllPancreasPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_rev AorticSmsToIL1b_06hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse 0 98 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_rev AorticSmsToIL1b_06hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse 1 98 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep1%20%28LK58%29.CNhs13357.12661-134I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep1 (LK58)_CNhs13357_12661-134I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12661-134I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr1-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep1LK58_CNhs13357_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12661-134I6\ urlLabel FANTOM5 Details:\ colonMacro446 Colon - Macrophages - Z00000446 bigWig Methylation Atlas: Colon - Macrophages - Z00000446 2 98 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonMacro446.bw\ color 244,164,96\ longLabel Methylation Atlas: Colon - Macrophages - Z00000446\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 98\ shortLabel Colon - Macrophages - Z00000446\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track colonMacro446\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF380ELC_ENCFF155GED_ENCFF617TKL_ENCFF915AST ENCFF380ELC_ENCFF155GED_ENCFF617TKL_ENCFF915AST bigBed 9 + 5 Heart left ventricle, male adult (43 years): (1) cCREs 4 98 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF380ELC_ENCFF155GED_ENCFF617TKL_ENCFF915AST.bb\ longLabel Heart left ventricle, male adult (43 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 44\ shortLabel ENCFF380ELC_ENCFF155GED_ENCFF617TKL_ENCFF915AST\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_left_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeCcres\ track ENCFF380ELC_ENCFF155GED_ENCFF617TKL_ENCFF915AST\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF699NGB ENCSR000AUQ Signal bigWig H1 EP300 ENCSR000AUQ signal 2 98 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/a1e83893-a11d-40bf-bf6d-5a16e456a89f/ENCFF699NGB.bigWig\ color 118,158,101\ longLabel H1 EP300 ENCSR000AUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUQ Signal\ track wgEncodeReg4TfChip_ENCFF699NGB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF111MGE ENCSR000BPJ Peak bigBed 5 K562 CTCF peak 4 98 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0c9eb90f-1bc9-4b71-90f0-1c22f9d47f39/ENCFF111MGE.bigBed\ color 0,176,240\ labelFields none\ longLabel K562 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BPJ Peak\ track wgEncodeReg4Epigenetics_ENCFF111MGE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF075ZYH ENCSR003BTD - strand bigWig Adrenal gland tissue female adult (47 years) - strand total RNA-seq signal 2 98 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/51b3acc0-0ad5-4229-8a20-8aa5043ab759/ENCFF075ZYH.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR003BTD - strand\ track wgEncodeReg4RnaSeq_ENCFF075ZYH\ type bigWig\ visibility full\ encTfChipPkENCFF356LIU GM12878 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF356LIU) 0 98 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF356LIU)\ parent encTfChipPk on\ shortLabel GM12878 CTCF 1\ subGroups cellType=GM12878 factor=CTCF\ track encTfChipPkENCFF356LIU\ wgEncodeRegDnaseUwLncapHotspot LNCaP Ht bigBed 6 + LNCaP prostate adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 98 255 102 85 255 178 170 1 0 0 regulation 1 color 255,102,85\ longLabel LNCaP prostate adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel LNCaP Ht\ subGroups view=b_Hot cellType=LNCaP treatment=n_a tissue=prostate cancer=cancer\ track wgEncodeRegDnaseUwLncapHotspot\ type bigBed 6 +\ netHprcGCA_018504665v1 NA21309.pat netAlign GCA_018504665.1 chainHprcGCA_018504665v1 NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chain Nets 1 98 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA21309.pat NA21309.alt.pat.f1_v2 (May 2021 GCA_018504665.1_NA21309.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504665.1\ parent hprcChainNetViewnet off\ priority 86\ shortLabel NA21309.pat\ subGroups view=net sample=s086 population=other subpop=hapmap hap=pat\ track netHprcGCA_018504665v1\ type netAlign GCA_018504665.1 chainHprcGCA_018504665v1\ wgEncodeReg4TxnAllPancreasMinus Pancreas - (all biosamples) bigWig Avg. - strand total RNA-seq level of 11 pancreas experiments (all biosamples) 0 98 175 100 41 215 177 148 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/pancreasMinus.bw\ color 175,100,41\ longLabel Avg. - strand total RNA-seq level of 11 pancreas experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 98\ shortLabel Pancreas - (all biosamples)\ track wgEncodeReg4TxnAllPancreasMinus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_fwd AorticSmsToIL1b_06hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward 0 99 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_fwd AorticSmsToIL1b_06hrBr2+ bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward 1 99 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep2%20%28LK59%29.CNhs13378.12759-136B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep2 (LK59)_CNhs13378_12759-136B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12759-136B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr2+\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=forward\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep2LK59_CNhs13378_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12759-136B5\ urlLabel FANTOM5 Details:\ ENCFF847FPR_ENCFF454ERF_ENCFF982IVZ_ENCFF505OIJ ENCFF847FPR_ENCFF454ERF_ENCFF982IVZ_ENCFF505OIJ bigBed 9 + 5 Heart right ventricle, male adult (43 years): (1) cCREs 4 99 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF847FPR_ENCFF454ERF_ENCFF982IVZ_ENCFF505OIJ.bb\ longLabel Heart right ventricle, male adult (43 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 48\ shortLabel ENCFF847FPR_ENCFF454ERF_ENCFF982IVZ_ENCFF505OIJ\ subGroups organ=heart view=cCREs_view simpleBiosample=heart_right_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeCcres\ track ENCFF847FPR_ENCFF454ERF_ENCFF982IVZ_ENCFF505OIJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF506FKC ENCSR000AUV Peak bigBed 5 B cell female adult (27 years) and female adult (43 years) CTCF peaks 4 99 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/2060f38a-0785-49d3-a155-ebd57b64f682/ENCFF506FKC.bigBed\ labelFields none\ longLabel B cell female adult (27 years) and female adult (43 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF506FKC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF736UDR ENCSR000BPJ Signal bigWig K562 CTCF signal 2 99 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/abcbe251-d16a-4fdc-8cbb-3e58f3d182f7/ENCFF736UDR.bigWig\ color 0,176,240\ longLabel K562 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BPJ Signal\ track wgEncodeReg4Epigenetics_ENCFF736UDR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF333RMV ENCSR007SVQ + strand bigWig Dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal 2 99 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/8e6199a7-dba2-40bb-be64-4516c2a0f969/ENCFF333RMV.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR007SVQ + strand\ track wgEncodeReg4RnaSeq_ENCFF333RMV\ type bigWig\ visibility full\ encTfChipPkENCFF960ZGP GM12878 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF960ZGP) 0 99 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM12878 from ENCODE 3 (ENCFF960ZGP)\ parent encTfChipPk off\ shortLabel GM12878 CTCF 2\ subGroups cellType=GM12878 factor=CTCF\ track encTfChipPkENCFF960ZGP\ chainHprcGCA_018504085v1 HG02080.mat chain GCA_018504085.1 HG02080.mat HG02080.pri.mat.f1_v2 (May 2021 GCA_018504085.1_HG02080.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 99 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02080.mat HG02080.pri.mat.f1_v2 (May 2021 GCA_018504085.1_HG02080.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504085.1\ parent hprcChainNetViewchain off\ priority 84\ shortLabel HG02080.mat\ subGroups view=chain sample=s084 population=eas subpop=khv hap=mat\ track chainHprcGCA_018504085v1\ type chain GCA_018504085.1\ wgEncodeRegDnaseUwHmecHotspot HMEC Ht bigBed 6 + HMEC mammary epithelium DNaseI Hotspots from ENCODE 0 99 255 112 85 255 183 170 1 0 0 regulation 1 color 255,112,85\ longLabel HMEC mammary epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMEC Ht\ subGroups view=b_Hot cellType=HMEC treatment=n_a tissue=breast cancer=normal\ track wgEncodeRegDnaseUwHmecHotspot\ type bigBed 6 +\ liverMacro43P Liver - Macrophages - Z0000043P bigWig Methylation Atlas: Liver - Macrophages - Z0000043P 2 99 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverMacro43P.bw\ color 244,164,96\ longLabel Methylation Atlas: Liver - Macrophages - Z0000043P\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 99\ shortLabel Liver - Macrophages - Z0000043P\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track liverMacro43P\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllProstatePlus Prostate + (all biosamples) bigWig Avg. + strand total RNA-seq level of 4 prostate experiments (all biosamples) 0 99 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/prostatePlus.bw\ color 140,140,140\ longLabel Avg. + strand total RNA-seq level of 4 prostate experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 99\ shortLabel Prostate + (all biosamples)\ track wgEncodeReg4TxnAllProstatePlus\ type bigWig\ est Human ESTs psl est Human ESTs Including Unspliced 0 100 0 0 0 127 127 127 1 0 0
Description
\\ This track shows alignments between human expressed sequence tags \ (ESTs) in GenBank and the genome. ESTs are single-read sequences, \ typically about 500 bases in length, that usually represent fragments of \ transcribed genes.
\\ NOTE: As of April, 2007, we no longer include GenBank sequences \ that contain the following URL as part of the record:\
\ http://fulllength.invitrogen.com\\ Some of these entries are the result of alignment to pseudogenes,\ followed by "correction" of the EST to match the genomic sequence. \ It is therefore not the sequence of the actual EST and makes it appear that \ the EST is transcribed. Invitrogen no longer sells the clones.\ \ \
Display Conventions and Configuration
\\ This track follows the display conventions for \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.
\\ The strand information (+/-) indicates the\ direction of the match between the EST and the matching\ genomic sequence. It bears no relationship to the direction\ of transcription of the RNA with which it might be associated.
\\ The description page for this track has a filter that can be used to change \ the display mode, alter the color, and include/exclude a subset of items \ within the track. This may be helpful when many items are shown in the track \ display, especially when only some are relevant to the current task.
\\ To use the filter:\
- \
- Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of \ valid terms for each text box, consult the table in the Table Browser that \ corresponds to the factor on which you wish to filter. For example, the \ "tissue" table contains all the types of tissues that can be \ entered into the tissue text box. Multiple terms may be entered at once, \ separated by a space. Wildcards may also be used in the\ filter.\
- If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter \ criteria will be highlighted. If "or" is selected, ESTs that \ match any one of the filter criteria will be highlighted.\
- Choose the color or display characteristic that should be used to \ highlight or include/exclude the filtered items. If "exclude" is \ chosen, the browser will not display ESTs that match the filter criteria. \ If "include" is selected, the browser will display only those \ ESTs that match the filter criteria.\
\ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those \ that differ from the genomic sequence. For more information about this option,\ click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\
\ \Methods
\\ To make an EST, RNA is isolated from cells and reverse\ transcribed into cDNA. Typically, the cDNA is cloned\ into a plasmid vector and a read is taken from the 5'\ and/or 3' primer. For most — but not all — ESTs, the\ reverse transcription is primed by an oligo-dT, which\ hybridizes with the poly-A tail of mature mRNA. The\ reverse transcriptase may or may not make it to the 5'\ end of the mRNA, which may or may not be degraded.
\\ In general, the 3' ESTs mark the end of transcription\ reasonably well, but the 5' ESTs may end at any point\ within the transcript. Some of the newer cap-selected\ libraries cover transcription start reasonably well. Before the \ cap-selection techniques\ emerged, some projects used random rather than poly-A\ priming in an attempt to retrieve sequence distant from the\ 3' end. These projects were successful at this, but as\ a side effect also deposited sequences from unprocessed\ mRNA and perhaps even genomic sequences into the EST databases.\ Even outside of the random-primed projects, there is a\ degree of non-mRNA contamination. Because of this, a\ single unspliced EST should be viewed with considerable\ skepticism.
\\ To generate this track, human ESTs from GenBank were aligned \ against the genome using blat. Note that the maximum intron length\ allowed by blat is 750,000 bases, which may eliminate some ESTs with very \ long introns that might otherwise align. When a single \ EST aligned in multiple places, the alignment having the \ highest base identity was identified. Only alignments having\ a base identity level within 0.5% of the best and at least 96% base identity \ with the genomic sequence were kept.
\ \Credits
\\ This track was produced at UCSC from EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide.
\ \References
\\ Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\ GenBank: update. Nucleic Acids Res.\ 2004 Jan 1;32(Database issue):D23-6.
\\ Kent WJ.\ BLAT - The BLAST-Like Alignment Tool.\ Genome Res. 2002 Apr;12(4):656-64.
\ rna 1 baseColorUseSequence genbank\ group rna\ indelDoubleInsert on\ indelQueryInsert on\ intronGap 30\ longLabel Human ESTs Including Unspliced\ maxItems 300\ shortLabel Human ESTs\ spectrum on\ table all_est\ track est\ type psl est\ visibility hide\ mrna Human mRNAs psl . Human mRNAs from GenBank 0 100 0 0 0 127 127 127 1 0 0Description
\ \\ The mRNA track shows alignments between human mRNAs\ in \ GenBank and the genome.
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.\
\ \\ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\
\ \\ To use the filter:\
- \
- Type a term in one or more of the text boxes to filter the mRNA\ display. For example, to apply the filter to all mRNAs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter. \
- If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only mRNAs that match all filter\ criteria will be highlighted. If "or" is selected, mRNAs that\ match any one of the filter criteria will be highlighted. \
- Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display mRNAs that match the filter criteria.\ If "include" is selected, the browser will display only those\ mRNAs that match the filter criteria. \
\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare mRNAs against the genomic sequence. For more\ information about this option, go to the\ \ Codon and Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\
\ \Methods
\ \\ GenBank human mRNAs were aligned against the genome using the\ blat program. When a single mRNA aligned in multiple places,\ the alignment having the highest base identity was found.\ Only alignments having a base identity level within 0.5% of\ the best and at least 96% base identity with the genomic sequence were kept.\
\ \Credits
\ \\ The mRNA track was produced at UCSC from mRNA sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\
\ \References
\\
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\
\
GenBank.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\
PMID: 23193287; PMC:
\
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\
GenBank: update.\
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\
PMID: 14681350; PMC:
\
Kent WJ.\
BLAT - the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
Description
\\ This supertrack is a collection of tracks from the\ 1000 Genomes Project showing\ paired-end accessible regions and integrated variant calls. More information about display\ conventions, methods, credits, and references can be found on each subtrack's description page.\
\\ For more details, see:
\- \
- \ \ 1000 Genomes Frequently Asked Questions (FAQ)\ \
- \ \ 1000 Genomes Project - Analysis overview\ \
Credits
\\ Thanks to the International Genome Sample Resource (IGSR) for making these variant calls\ freely available.
\ varRep 0 cartVersion 2\ group varRep\ html ../tgpArchive\ longLabel 1000 Genomes Phase 3\ shortLabel 1000 Genomes\ superTrack on\ track tgpArchive\ visibility hide\ tgpTrios 1000 Genomes Trios vcfPhasedTrio Thousand Genomes Project Family VCF Trios 3 100 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,Description
\\ This track shows approximately 4.5 million single nucleotide variants (SNVs) and\ 0.6 million short insertions/deletions (indels) from 7 different parent/child trios as\ produced by the\ International\ Genome Sample Resource (IGSR), from sequence data generated by the\ 1000 Genomes Project\ in its Phase 3 sequencing of 2,504 genomes from 16 populations worldwide.
\\ Variants were called on the autosomes (chromosomes 1 through 22) and on the\ Pseudo-Autosomal Regions (PARs) of chromosome X.\ Therefore this track has no annotations on alternate haplotype sequences, fix patches,\ chromosome Y, or the non-PAR portion (the majority) of chromosome X.\
\\ The variant genotypes have been phased (i.e., the two alleles of each diploid genotype\ have been assigned to two\ haplotypes,\ one inherited from each parent). This information allows us to illustrate which\ haplotypes in the child have been inherited from which parent.\
\ \Trios from six different populations are available, including:\
- \
- YRI - Yoruban from Idaban, Nigeria \
- KHV - Kinh in Ho Chi Minh City, Vietnam \
- PUR - Puerto Ricans from Puerto Rico \
- CEU - CEPH Utah \
- CHS - Southern Han Chinese \
- MXL - Mexican Ancestry from Los Angeles \
Display Conventions and Configuration
\\ This track illustrates the vcfPhasedTrio track type, where two lines, one for each chromosome\ in the diploid genome, is drawn per sample in the underlying VCF. Variants in the window\ are then drawn on the haplotype line corresponding to which haplotype they belong to, such that\ variants on the same line were likely inherited together. The sorting routine is the same as\ what is used to draw the haplotype sorted display in the non-trio 1000 Genomes track, and is\ described here.\
\ \\ The child haplotypes are drawn in the center of each group, flanked above and below by\ parent haplotypes, and variants are sorted to show the transmitted alleles:\
\ parent 1 untransmitted haploytpe \ parent 1 transmitted haplotype\ child haplotype inherited from parent 1\ child haplotype inherited from parent 2\ parent 2 transmitted haplotype\ parent 2 untransmitted haploytpe \\ \
\ Track configuration options include:\
- \
- Showing the child haplotypes below the parent(s) \
- Toggling the haplotype labels with mother/father/child or VCF sample IDs \
- Hiding the parent samples \
\ Allele coloring options include:\
- \
- No shading - the default option \
- Shading by functional effect of the variant relative to NCBI RefSeq Curated Transcripts:\
- reference alleles invisible \
- alternate alleles in red for non-synonymous \
- alternate alleles in green for synonymous \
- alternate alleles in blue for UTR/noncoding \
- alternate alleles in black otherwise \
\
- Child de novo alleles in red - all alternate alleles black except for cases where the child has\ an allele not present in either parent \
- Child alleles that are "inconsistent" with phasing in red - all alternate alleles black except for cases where the "inherited" child allele does not match the "transmitted" parent allele. Note that as the genomic location changes, and thus the alleles present to use for sorting change, whether an allele is marked as inconsistent can change as well. Because all the variants present in the window are considered a haplotype, what haplotypes are considered "inherited" and "transmitted" varies as the viewing location changes \
\ From the subtrack configure menu, there is the option to manually rearrange \ the family order for each trio by dragging haplotypes. \
\ \\ Clicking on a variant takes one to a details page with the standard VCF details, including\ INFO column annotations, the REF and ALT alleles, and the genotypes from all three samples.\
\ \Methods
\\ The genomes of 2,504 individuals were sequenced using both whole-genome sequencing\ (mean depth = 7.4x) and targeted exome sequencing (mean depth = 65.7x).\ Sequence reads were aligned to the reference genome using alt-aware BWA-MEM\ (Zheng-Bradley et al.).\ Variant discovery and quality control were performed as described in\ Lowy-Gallego et al.
\\ See also:\
\ \ \UCSC Methods
\\ Trio samples were extracted out of both the main 1000 Genomes set, and the\ related samples using the pedigree information from 1000\ Genomes. Variants that were homozygous reference across all three samples were removed.\
\ \Data Access
\\ Trio VCFs are available for download from\ our download server.\
\ \Credits
\\ Thanks to the\ International Genome Sample\ Resource (IGSR)\ for making these variant calls freely available.\
\ \References
\ \\
Zheng-Bradley X, Streeter I, Fairley S, Richardson D, Clarke L, Flicek P, 1000 Genomes Project\
Consortium.\
\
Alignment of 1000 Genomes Project reads to reference assembly GRCh38.\
Gigascience. 2017 Jul 1;6(7):1-8.\
PMID: 28531267; PMC:
\ Fairley S, Lowy-Gallego E, Perry E, Flicek P.\ \ The International Genome Sample Resource (IGSR) collection of open human genomic variation\ resources.\ Nucleic Acids Res. 2019 Oct 4.\ PMID: 31584097\
\ \\ Lowy-Gallego E, Fairley S, Zheng-Bradley X, Ruffier M, Clarke L, Flicek P,\ 1000 Genomes Project Consortium.\ \ Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project [version 1; peer review: 2 not approved].\ Wellcome Open Research. 2019 Mar. 11.\
\ \\ 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO,\ Marchini JL, McCarthy S, McVean GA et al.\ \ A global reference for human genetic variation.\ Nature. 2015 Oct 1;526(7571):68-74.\ PMID: 26432245\
\ varRep 0 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX\ compositeTrack on\ geneTrack ncbiRefSeqCurated\ html tgpTrios\ longLabel Thousand Genomes Project Family VCF Trios\ maxWindowToDraw 5000000\ parent tgpArchive\ shortLabel 1000 Genomes Trios\ track tgpTrios\ type vcfPhasedTrio\ vcfDoFilter off\ vcfDoMaf off\ vcfDoQual off\ vcfUseAltSampleNames on\ visibility pack\ tgpPhase3 1000G Ph3 Vars vcfTabix 1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels 0 100 0 0 0 127 127 127 0 0 23 chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX,Description
\\ This track shows approximately 73 million single nucleotide variants (SNVs) and\ 5 million short insertions/deletions (indels)\ produced by the\ International\ Genome Sample Resource (IGSR) from sequence data generated by the\ 1000 Genomes Project\ in its Phase 3 sequencing of 2,504 genomes from 16 populations worldwide.
\\ Variants were called on the autosomes (chromosomes 1 through 22) and on the\ Pseudo-Autosomal Regions (PARs) of chromosome X.\ Therefore this track has no annotations on alternate haplotype sequences, fix patches,\ chromosome Y, or the non-PAR portion (the majority) of chromosome X.\
\\ The variant genotypes have been phased\ (i.e., the two alleles of each diploid genotype have been assigned to two\ haplotypes,\ one inherited from each parent).\ This extra information enables a clustering of independent haplotypes\ by local similarity for display.\
\ \Display Conventions
\\ \ \ \ In "dense" mode, a vertical line is drawn at the position of each\ variant.\ In "pack" mode, since these variants have been phased, the\ display shows a clustering of haplotypes in the viewed range, sorted\ by similarity of alleles weighted by proximity to a central variant.\ The clustering view can highlight local patterns of linkage.
\\ In the clustering display, each sample's phased diploid genotype is split\ into two independent haplotypes.\ Each haplotype is placed in a horizontal row of pixels; when the number of\ haplotypes exceeds the number of vertical pixels for the track, multiple\ haplotypes fall in the same pixel row and pixels are averaged across haplotypes.
\\ Each variant is a vertical bar with white (invisible) representing the reference allele\ and black representing the non-reference allele(s).\ Tick marks are drawn at the top and bottom of each variant's vertical bar\ to make the bar more visible when most alleles are reference alleles.\ The vertical bar for the central variant used in clustering is outlined in purple.\ In order to avoid long compute times, the range of alleles used in clustering\ may be limited; alleles used in clustering have purple tick marks at the\ top and bottom.
\\ The clustering tree is displayed to the left of the main image.\ It does not represent relatedness of individuals; it simply shows the arrangement\ of local haplotypes by similarity. When a rightmost branch is purple, it means\ that all haplotypes in that branch are identical, at least within the range of\ variants used in clustering.\
\ \Methods
\\ The genomes of 2,504 individuals were sequenced using both whole-genome sequencing\ (mean depth = 7.4x) and targeted exome sequencing (mean depth = 65.7x).\ Sequence reads were aligned to the reference genome using alt-aware BWA-MEM\ (Zheng-Bradley et al.).\ Variant discovery and quality control were performed as described in\ (Lowy-Gallego et al.).\ \ \ See also:\
\ \ \Data Access
\\ VCF files were downloaded from\ EBI\ and are also available for download from\ UCSC.\
\ \Credits
\\ Thanks to the\ International Genome Sample\ Resource (IGSR)\ for making these variant calls freely available.\
\ \References
\ \\
Zheng-Bradley X, Streeter I, Fairley S, Richardson D, Clarke L, Flicek P, 1000 Genomes Project\
Consortium.\
\
Alignment of 1000 Genomes Project reads to reference assembly GRCh38.\
Gigascience. 2017 Jul 1;6(7):1-8.\
PMID: 28531267; PMC:
\ Fairley S, Lowy-Gallego E, Perry E, Flicek P.\ \ The International Genome Sample Resource (IGSR) collection of open human genomic variation\ resources.\ Nucleic Acids Res. 2019 Oct 4.\ PMID: 31584097\
\ \\ Lowy-Gallego E, Fairley S, Zheng-Bradley X, Ruffier M, Clarke L, Flicek P,\ 1000 Genomes Project Consortium.\ \ Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project [version 1; peer review: 2 not approved].\ Wellcome Open Research. 2019 Mar. 11.\
\ \\ 1000 Genomes Project Consortium, Auton A, Brooks LD, Durbin RM, Garrison EP, Kang HM, Korbel JO,\ Marchini JL, McCarthy S, McVean GA et al.\ \ A global reference for human genetic variation.\ Nature. 2015 Oct 1;526(7571):68-74.\ PMID: 26432245\
\ varRep 1 chromosomes chr1,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chrX\ geneTrack ncbiRefSeqCurated\ html tgpPhase3\ longLabel 1000 Genomes Phase 3 Integrated Variant Calls from IGSR: SNVs and Indels\ maxWindowToDraw 5000000\ parent tgpArchive\ shortLabel 1000G Ph3 Vars\ showHardyWeinberg on\ track tgpPhase3\ type vcfTabix\ visibility hide\ viennaVntr 1KG Vienna ONT VNTR bigBed 9 + 1000 Genomes Vienna ONT VNTR Allele Statistics (VAMOS, 1,019 samples, long-read) 1 100 0 0 0 127 127 127 0 0 0Description
\\ This track shows allele statistics for 361,362 variable number tandem repeat (VNTR)\ loci genotyped from Oxford Nanopore long-read whole-genome sequencing of 1,019 samples\ from the\ 1000 Genomes\ ONT Vienna project. VNTR genotyping was performed with\ VAMOS,\ a tool that determines the motif composition of VNTR alleles from long reads.\ This is version 1.1 of the dataset.\
\ \\ Unlike the other STR tracks in this collection which are based on short-read sequencing\ and limited to short tandem repeats (motifs of 1-6 bp), this track is derived from\ long-read sequencing data, which can span much longer repeat regions. The VNTR loci\ in this track have average motif lengths ranging from a few base pairs to over 100 bp,\ and allele lengths up to several kilobases.\
\ \\ For each locus, the track shows the average repeat unit length, the number of unique\ alleles observed, the range and median of repeat unit counts, and the range and median\ of allele lengths in base pairs. The 1000 Genomes Vienna ONT project also produced\ structural variant calls available in the\ Long-Read Structural Variants track.\
\ \Display Conventions
\\ Items are colored by expected heterozygosity, computed as\ het = 1 − ∑pi2 from allele frequencies\ across the 1,019 samples:
\- \
- Light gray – monomorphic (het = 0, single allele observed) \
- Dark blue – nearly monomorphic (0 < het < 0.1) \
- Medium blue – low diversity (het 0.1–0.3) \
- Light purple – moderate diversity (het 0.3–0.5) \
- Salmon – high diversity (het 0.5–0.7) \
- Dark red – very high diversity (het ≥ 0.7) \
- Medium gray – no allele frequency data available \
Methods
\\ The 1000 Genomes Vienna ONT project sequenced 1,019 samples from the 1000 Genomes\ collection using Oxford Nanopore Technologies long-read sequencing. VNTR genotyping\ was performed using\ VAMOS,\ which determines the motif composition of VNTR alleles by aligning long reads to\ a catalog of known VNTR sites.\ The analysis pipeline is available at\ GitHub.\
\\ At UCSC, the summary statistics file (vamos-summary.tsv) was converted\ to bigBed format using a\ custom Python script.\ Loci with coordinates exceeding chromosome boundaries were excluded.\
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ The data can be accessed from scripts through our\ API, the track name is viennaVntr.\
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed\ file that can be downloaded from\ our download server.\ The file for this track is called viennaVntr.bb.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a\ precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain features within a given range, e.g.\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/strVar/viennaVntr.bb\ -chrom=chr21 -start=0 -end=100000000 stdout\
\ \\ The original data (multisample VCF and summary statistics) can be downloaded from\ the 1000 Genomes FTP server.\ The VNTR site list used for genotyping is available from\ Zenodo.\
\ \Credits
\\ Thanks to the 1000 Genomes ONT Vienna consortium and the Marschall Lab at\ Heinrich Heine University Düsseldorf for making this data publicly available.\
\ \References
\\ De Coster W, Condon DE, De Baets G, Tsui A, Saeed F, Harerimana J, Amiraghdam F, Yaari R,\ De Vos L, Mahfouz A et al.\ \ Sequencing and variant calling of 1019 samples from the\ 1000 Genomes Project using Oxford Nanopore Technology.\ bioRxiv. 2024 Dec 23;.\
\ varRep 1 bigDataUrl /gbdb/hg38/strVar/viennaVntr.bb\ dataVersion v1.1\ filter.het 0:1\ filterByRange.het on\ filterLimits.het 0:1\ itemRgb on\ longLabel 1000 Genomes Vienna ONT VNTR Allele Statistics (VAMOS, 1,019 samples, long-read)\ mouseOver Avg motif: $ruLenAvg bpMedian repeat units: $medianRus (range: $minRus-$maxRus)
Unique alleles: $numUniqueVntrs
Heterozygosity: $het\ scoreFilter 0\ searchIndex name\ shortLabel 1KG Vienna ONT VNTR\ skipEmptyFields on\ superTrack strVar dense\ track viennaVntr\ type bigBed 9 +\ visibility dense\ consHprc90wayViewalign 90-way bed 4 Multiple Alignment on 90 human genome assemblies 3 100 0 0 0 127 127 127 0 0 0 hprc 1 longLabel Multiple Alignment on 90 human genome assemblies\ parent consHprc90way\ shortLabel 90-way\ track consHprc90wayViewalign\ view align\ viewUi on\ visibility pack\ abSplice AbSplice Scores bigBed 9 + Aberrant Splicing Prediction Scores 1 100 0 0 0 127 127 127 0 0 0
Description
\\ AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner, \ Çelik et al., 2023. This track displays precomputed AbSplice scores for all possible\ single-nucleotide variants genome-wide. The scores represent the probability that a given variant\ causes aberrant splicing in a given tissue.\ AbSplice scores\ can be computed from VCF files and are based on quantitative tissue-specific splice site annotations\ (SpliceMaps).\ While SpliceMaps can be generated for any tissue of interest from a cohort of RNA-seq samples, this \ track includes 49 tissues available from the \ Genotype-Tissue\ Expression (GTEx) dataset. \
\ \Display Conventions
\\ The AbSplice score is a probability estimate of how likely aberrant splicing of some sort takes \ place in a given tissue. The authors suggest three cutoffs which are represented by color in the track.\
\ \- \
- High (red) - \ An AbSplice score over 0.2 indicates a high likelihood of aberrant splicing in at least one tissue. \
- Medium (orange) - \ A score between 0.05 and 0.2 indicates a medium likelihood. \
- Low (blue) - \ A score between 0.01 and 0.05 indicates a low likelihood. \
- Scores below 0.01 are not displayed. \
\ Mouseover on items shows the gene name, maximum score, and tissues that had this score. Clicking on\ any item brings up a table with scores for all 49 GTEX tissues.\
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. \ For automated analysis, the data may be queried from our\ REST API.\ Please refer to our\ mailing list archives \ for questions, or our\ Data Access FAQ \ for more information.\
Precomputed AbSplice-DNA scores in all 49 GTEx tissues are available at\ \ Zenodo. \ \
Methods
\\ Data was converted from the files (AbSplice_DNA_ hg38 _snvs_high_scores.zip) provided by the authors\ at zenodo.org. Files in the\ score_cutoff=0.01 directory were concatenated. To convert the data to bigBed format, scores and\ their tissues were selected from the AbSplice_DNA fields and maximum scores, and then calculated\ using a custom Python script, which can be found in the\ \ makeDoc from our GitHub repository.
\ \Credits
\\ Thanks to Nils Wagner for helpful comments and suggestions.
\ \References
\\ Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J.\ \ Aberrant splicing prediction across human tissues.\ Nat Genet. 2023 May;55(5):861-870.\ PMID: 37142848\
\ phenDis 1 bigDataUrl /gbdb/hg38/abSplice/AbSplice.bb\ dataVersion Feb 2024\ filter.spliceABscore 0.01\ filterLabel.maxScore Tissues\ filterLabel.spliceABscore Filter by minimum AbSplice score\ filterLimits.spliceABscore 0.01:1\ filterText.maxScore *\ group phenDis\ html abSplice\ itemRgb on\ longLabel Aberrant Splicing Prediction Scores\ mouseOver change: $namegene: $ENSGid
max score: $spliceABscore
$maxScore\ noScoreFilter on\ parent spliceImpactSuper on\ shortLabel AbSplice Scores\ track abSplice\ type bigBed 9 +\ visibility dense\ gnomADPextAdipose_Subcutaneous Adipose-Subcut bigWig 0 1 gnomAD pext Adipose-Subcutaneous 0 100 255 102 0 255 178 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Adipose_Subcutaneous.bw\ color 255,102,0\ longLabel gnomAD pext Adipose-Subcutaneous\ parent gnomadPext off\ shortLabel Adipose-Subcut\ track gnomADPextAdipose_Subcutaneous\ visibility hide\ gnomADPextAdipose_Visceral_Omentum Adipose-Visceral (Omentum) bigWig 0 1 gnomAD pext Adipose-Visceral (Omentum) 0 100 255 170 0 255 212 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Adipose_Visceral_Omentum.bw\ color 255,170,0\ longLabel gnomAD pext Adipose-Visceral (Omentum)\ parent gnomadPext off\ shortLabel Adipose-Visceral (Omentum)\ track gnomADPextAdipose_Visceral_Omentum\ visibility hide\ gnomADPextAdrenalGland Adrenal Gland bigWig 0 1 gnomAD pext Adrenal Gland 0 100 51 221 51 153 238 153 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/AdrenalGland.bw\ color 51,221,51\ longLabel gnomAD pext Adrenal Gland\ parent gnomadPext off\ shortLabel Adrenal Gland\ track gnomADPextAdrenalGland\ visibility hide\ affyArchive Affy Archive psl . Affymetrix Archive 0 100 0 0 0 127 127 127 0 0 0
Description
\\ This supertrack is a collection of Affymetrix tracks showing the location of the consensus and\ exemplar sequences used for the selection of probes on the Affymetrix chips.\
\Credits
\\ Thanks to\ Affymetrix for the data underlying these tracks.\
\ expression 1 cartVersion 2\ group expression\ html ../affyArchive\ longLabel Affymetrix Archive\ shortLabel Affy Archive\ superTrack on\ track affyArchive\ type psl .\ visibility hide\ affyGnf1h Affy GNF1H psl . Alignments of Affymetrix Consensus/Exemplars from GNF1H 3 100 0 0 0 127 127 127 0 0 0Description
This track shows the location of the sequences used for the selection of\ probes on the Affymetrix GNF1H chips. This contains 11406 predicted genes that do not overlap with\ the Affy U133A chip.
\ \Methods
The sequences were mapped to the genome using blat followed by pslReps with the\ parameters:
-minCover=0.3 -minAli=0.95 -nearTop=0.005\ \
Credits
Thanks to the Genomics\ Institute of the Novartis Research Foundation (GNF) for the data underlying this track.
\ \References
\\
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G\
et al.\
\
A gene atlas of the mouse and human protein-encoding transcriptomes.\
Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6062-7.\
PMID: 15075390; PMC:
Description
\\ This track shows the location of the consensus and exemplar sequences used \ for the selection of probes on the Affymetrix HG-U133A and HG-U133B chips.
\ \Methods
\\ Consensus and exemplar sequences were downloaded from the\ Affymetrix Product Support\ and mapped to the genome using blat followed by pslReps with the \ parameters:
-minCover=0.5 -minAli=0.97 -nearTop=0.005\\ \
Credits
\\ Thanks to Affymetrix for the data underlying this track.
\ expression 1 group expression\ longLabel Alignments of Affymetrix Consensus/Exemplars from HG-U133\ parent affyArchive\ shortLabel Affy U133\ track affyU133\ type psl .\ visibility pack\ affyU95 Affy U95 psl . Alignments of Affymetrix Consensus/Exemplars from HG-U95 3 100 0 0 0 127 127 127 0 0 0Description
\\ This track shows the location of the consensus and exemplar sequences used \ for the selection of probes on the Affymetrix HG-U95Av2 chip. For this chip, \ probes are predominantly designed from consensus sequences.
\ \Methods
\\ Consensus and exemplar sequences were downloaded from the\ Affymetrix Product Support\ and mapped to the genome using blat followed by pslReps with the \ parameters:
-minCover=0.3 -minAli=0.95 -nearTop=0.005\\ \
Credits
\\ Thanks to Affymetrix for the data underlying this track.
\ expression 1 group expression\ longLabel Alignments of Affymetrix Consensus/Exemplars from HG-U95\ parent affyArchive\ shortLabel Affy U95\ track affyU95\ type psl .\ visibility pack\ lrSvAll All LR SVs merged bigBed 9 + All long-read SVs merged across subtracks by exact position, with per-database AC 3 100 0 0 0 127 127 127 0 0 0Description
\\ This track combines the structural-variant (SV) callsets from the individual\ subtracks of the Long-read SVs supertrack into a\ single, position-merged overview. Each item is an SV locus seen in one or more\ of the contributing long-read databases. For every merged locus the track\ records which databases report it, the summed allele count across those\ databases, and the range of allele frequencies observed, making it useful for\ quickly seeing how widely an SV has been reported across cohorts.\
\\ This is a summary view. For cohort-specific genotypes, per-population allele\ frequencies, and dataset-specific annotations, use the individual subtracks of\ the supertrack. The merge includes the released long-read callsets only;\ preliminary or unpublished subtracks (e.g. the Kim PD brain, 1000 Genomes\ linear, and HPRC Jasmine sets) are not part of this merged track.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type, matching the individual subtracks:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Duplications (DUP) - green \
- Inversions (INV) - orange \
- Complex and other multi-allele events - purple \
\ The mouseover shows the variant name, SV type, reference and insertion lengths,\ the list of contributing source databases, the allele-frequency range across\ those databases, and the total allele count. Filters are available for the\ source database, SV type, SV length, insertion\ length, total allele count, minimum and maximum allele\ frequency, and the number of source databases reporting each locus.\ The detail page lists the per-database allele counts.\
\ \Methods
\\ The merged track is built by the lrSvMergeAll.py script, which reads\ the bigBed of each contributing subtrack (configured in\ databases.tsv) and groups records that share an identical\ (chromosome, start, end) position and SV type. For each merged locus\ the script records the set of contributing databases (sources), the\ number of those databases (sourceCount), the sum of their allele counts\ (AC), and the minimum and maximum allele frequency across databases\ that report one (minAF, maxAF). The per-database allele counts\ are carried as additional columns.\
\\ The step-by-step build commands are recorded in the UCSC makeDoc for this track\ collection:\ \ doc/hg38/lrSv.txt. The merge script and autoSql schema live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSvAll.ra.\
\ \Data Access
\\ The data can be explored interactively with the\ Table Browser or the\ Data Integrator, and accessed\ programmatically through our API,\ track=lrSvAll.\
\\ The bigBed is available from\ our\ download server as lrSvAll.bb. Example:\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/lrSvAll.bb -chrom=chr21 -start=0 -end=100000000 stdout.\
\ \Credits
\\ This merged view is derived entirely from the contributing long-read SV\ callsets; please see the individual subtrack description pages for the data\ producers and citations for each cohort.\
\ varRep 1 bigDataUrl /gbdb/hg38/lrSv/lrSvAll.bb\ filter.AC 0:30000\ filter.insLen 0:600000\ filter.maxAF 0:1\ filter.minAF 0:1\ filter.sourceCount 1:14\ filter.svLen 0:30000000\ filterByRange.AC on\ filterByRange.insLen on\ filterByRange.maxAF on\ filterByRange.minAF on\ filterByRange.sourceCount on\ filterByRange.svLen on\ filterLabel.AC Total AC (across DBs)\ filterLabel.insLen Insertion Length (bp)\ filterLabel.maxAF Max Allele Frequency (across DBs)\ filterLabel.minAF Min Allele Frequency (across DBs)\ filterLabel.sourceCount Number of Source Databases\ filterLabel.sources Source Database\ filterLabel.svLen SV Length (bp)\ filterLabel.svType SV Type\ filterLimits.maxAF 0:1\ filterLimits.minAF 0:1\ filterType.sources multipleListOr\ filterType.svType multipleListOr\ filterValues.sources CoLoRSdb|CoLoRSdb 1427 (PacBio),1000G-ONT-Vienna|1KG ONT Vienna 1019,1000G-ONT|1KG ONT 100 (Gustafson),AoU1K|All of Us 1027 (PacBio),Han945|Han Chinese 945,TommoJapan|ToMMo 333 (Japanese),GA4K|GA4K 502 (rare disease),deCODE|deCODE 3622 (Icelandic),HPRCv2.1|HPRC v2.1 233,HGSVC2|HGSVC2 32,HGSVC3|HGSVC3 65,ArabUAE53|Arab APR 53,China58|CPC 58 (Chinese),Svatalog101|SVatalog 101\ filterValues.svType DEL,INS,DUP,INV,CPX,MIXED,INSDEL,TRA\ itemRgb on\ longLabel All long-read SVs merged across subtracks by exact position, with per-database AC\ mouseOver Var: $name ($svType)SV len: $svLen
Ins len: $insLen
Sources: $sources
AF range: $minAF-$maxAF
AC: $AC\ parent longReadVariants\ priority 0\ shortLabel All LR SVs merged\ skipEmptyFields on\ track lrSvAll\ type bigBed 9 +\ visibility pack\ alphaMissense AlphaMissense bigWig AlphaMissense Score for all possible single-basepair mutations (zoom in for scores) 0 100 100 130 160 177 192 207 0 0 0
Description
\\ This track shows AlphaMissense predictions for all possible single amino acid substitutions in \ the human proteome.\
\\ AlphaMissense is a deep learning method for predicting the pathogenicity of missense variants\ in human proteins. It classifies 32% of all missense variants as likely pathogenic and 57% \ as likely benign using a cutoff yielding 90% precision on the ClinVar dataset.\
\ \ \Display Conventions and Configuration
\There are four lettered subtracks, one for every nucleotide, showing\ scores for mutation from the reference to that\ nucleotide. All subtracks show the AlphaMissense score on mouseover. Across the exome, \ there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing\ the reference allele, e.g. A to A, is always set to zero, "0.0". AlphaMissense only\ takes into account amino acid changes, so a nucleotide change that results in no\ amino acid change (synonymous) is not scored. These are shown in the tracks\ with score "0.0". \ \
\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and no score will be shown on the mouseover tooltip.\
\ \Track colors
\\ This track is colored according to the am_class column in the AlphaMissense_hg38.tsv file.\ \
| Range | \Classification | \
|---|---|
| ≥ .564 | \Likely Pathogenic | \
| .565 - .340 | \Likely Neutral | \
| ≤ .340 | \Likely Benign | \
Data access
\\ AlphaMissense scores are available at the \ \ AlphaMissense cloud storage site. \ The site provides precomputed AlphaMissense scores for all possible human missense variants \ to facilitate the identification of pathogenic variants among the large number of \ rare variants discovered in sequencing studies.\
\ \\ The AlphaMissense data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\
\ \\ For automated download and analysis, the genome annotation is stored at UCSC in\ bigWig format that can be downloaded from\ our download server.\ The files for this track are called a.bw, c.bw, g.bw, t.bw. Individual\ regions or the whole genome annotation can be obtained using our tool bigWigToWig\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ For example, to extract only annotations in a given region, you could use the following command:\
\ \\ bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/alphaMissense/a.bw stdout\
\ \Methods
\ \\ Data were converted from the files provided on\ the AlphaMissense Downloads website. As with all other tracks,\ a full log of all commands used for the conversion is available in our \ source\ repository, for hg19\ and hg38.\ The release used for each assembly is shown on the track description page.\
\ \Credits
\\ Thanks to \
\ \References
\\ Cheng J, Novati G, Pan J, Bycroft C, Žemgulytė A, Applebaum T, Pritzel A, Wong LH,\ Zielinski M, Sargeant T et al.\ Accurate proteome-wide missense variant effect prediction with\ AlphaMissense.\ Science. 2023 Sep 22;381(6664):eadg7492.\ PMID: 37733863\
\ \ phenDis 0 color 100,130,160\ compositeTrack on\ group phenDis\ html alphaMissense.html\ longLabel AlphaMissense Score for all possible single-basepair mutations (zoom in for scores)\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ shortLabel AlphaMissense\ track alphaMissense\ type bigWig\ visibility hide\ altSeqLiftOverPsl Alt Haplotypes psl Reference Assembly Alternate Haplotype Sequence Alignments 3 100 0 0 100 127 127 177 0 0 0Description
\ \\ This track shows alignments of alternate locus (also known as "alternate haplotype")\ reference sequences to main chromosome sequences in the reference genome assembly.\ Some loci in the genome are highly variable, with sets of variants that tend\ to segregate into distinct haplotypes.\ Only one haplotype can be included in a reference assembly chromosome sequence.\ Instead of providing a separate complete chromosome sequence for each haplotype,\ which could cause confusion with divergent chromosome coordinates and\ ambiguity about which sequence is the official reference, the\ Genome Reference Consortium\ (GRC) adds alternate locus sequences, ranging from tens of thousands of bases\ up to low millions of bases in size, to represent the distinct haplotypes. \
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ \ PSL alignment tracks.\ Mismatching bases are highlighted in red.\ Several types of alignment gap may also be colored;\ for more information, see\ \ Alignment Insertion/Deletion Display Options.\ \
\ \Credits
\\ The alignments were provided by NCBI as GFF files and translated into the PSL\ representation for browser display by UCSC.\
\ map 1 baseColorDefault diffBases\ baseColorUseSequence db\ color 0,0,100\ group map\ indelDoubleInsert on\ indelQueryInsert on\ longLabel Reference Assembly Alternate Haplotype Sequence Alignments\ parent patchesPsl\ pennantIcon p14 black https://genome-blog.gi.ucsc.edu/blog/patches/ "Includes annotations on GRCh38.p14 patch sequences"\ shortLabel Alt Haplotypes\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track altSeqLiftOverPsl\ type psl\ visibility pack\ ancient Ancient Hominids bed 12 Ancient Hominid DNA Variants 0 100 0 0 0 127 127 127 0 0 0Description
\\
This container track contains genome variants from ancient hominids, from DNA\
samples extracted from Denisovan and Neanderthal, provided by the database
Display Conventions
\\ Variants that differ from human are highlighted. Click onto a variant to see more details.\
\ \Data Access
\\ The data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track name is\ "denisovan" and "neanderthal".
\ \\ For automated download and analysis, the genome annotation is stored in a tabix-indexed VCF file that\ can be downloaded from\ our download server.\ The files for this track are called denisovan.hg38.filt.vcf.gz and neanderthal.hg38.filt.vcf.gz. \ Various command line tools exist for working with VCF files. Users without command line experience can use the Galaxy website, by exporting the data directly from our table browser to Galaxy.\
\ \Methods
\\ Liang et al (see below) realigned the original sequencing reads to the hg38 and\ T2T CHM13 assemblies. UCSC removed positions from the VCF without an alternate\ allele to show only variants that are present in the ancient genomes and loaded the VCFs.\
\ \Credits
\\ We thank the Arcseqhub authors for making the data available.\
\ \References
\\
Liang SA, Ren T, Zhang J, He J, Wang X, Jiang X, He Y, McCoy RC, Fu Q, Akey JM et al.\
\
A refined analysis of Neanderthal-introgressed sequences in modern humans with a complete reference\
genome.\
Genome Biol. 2025 Feb 17;26(1):32.\
PMID: 39962554; PMC:
Description
\\ This track shows structural variants (SVs) identified by PacBio HiFi long-read\ sequencing of 1,027 individuals from the All of Us (AoU) Research Program.\ Participants self-identified as Black or African American and were sequenced\ to ~8x coverage. The track contains 540,155 SVs (443,630 insertions and\ 96,525 deletions) on autosomes, after removing byte-identical duplicate records\ from the 541,049-row release.\
\\ SVs are annotated with population-specific allele frequencies across five\ ancestry groups (African, Admixed American, East Asian, European, South Asian),\ gene intersections from curated disease gene lists (OMIM, ACMG, cancer genes),\ regulatory element overlaps, and associations with eQTLs, GWAS loci, and\ clinical phenotypes from the AoU electronic health records.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
\ Filters are available for SV type, SV length, and population-specific allele\ frequencies. For insertions, the item is placed at the insertion site with a\ width of 1 bp; for deletions, the item spans the deleted region.\
\\ The detail page shows the following annotations when available:\
- \
- Population Allele Frequencies: separate frequencies for AFR, AMR,\ EAS, EUR, and SAS ancestry groups \
- Fst: fixation index between African and non-African populations \
- Gene Intersections: overlapping OMIM, disease, cancer, and ACMG\ genes with constraint scores (pLI and LOEUF) \
- Regulatory Elements: intersected regulatory elements (e.g. enhancer,\ promoter) \
- Other LR Datasets: whether the SV was also detected in HPRC, HGSVC,\ or 1KG-ONT long-read datasets \
- eQTLs: expression QTL associations with q-values \
- GWAS Associations: overlapping GWAS loci with trait, gene, rsID,\ and LD information \
- SV-Trait Associations: associations with clinical phenotypes from\ AoU electronic health records, including odds ratios and confidence\ intervals \
Methods
\\ Garimella et al. 2025 performed PacBio HiFi long-read sequencing on 1,027\ All of Us participants self-identifying as Black or African American, to\ ~8x per-sample coverage at HudsonAlpha Discovery. SVs (≥50 bp) were\ called per sample with an ensemble of three methods: two alignment-based\ callers, \ PBSV v2.6.0 (with Tandem Repeat Finder context) and\ Sniffles2\ v2.0.6, plus the assembly-based PAV v1.2.1 (hifiasm haplotype-resolved contigs aligned\ to GRCh38 with minimap2 -x asm20). Per-caller VCFs were normalized,\ merged within and across samples and filtered into stringent and lenient\ tiers, and the callset was re-genotyped across the cohort to produce the\ final release: 541,049 autosomal SVs (444,524 insertions, 96,525 deletions)\ with per-ancestry allele frequencies (AFR, AMR, EAS, EUR, SAS) and gene,\ regulatory, eQTL, GWAS and EHR-phenotype annotations.\
\\ This track was built from the supplementary media-2 table of the AoU\ long-read sequencing preprint\ (\ doi:10.1101/2025.10.02.25336942). Access to the underlying AoU\ long-read data requires registration through the\ All of Us\ Research Hub.\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ This track was built from supplementary data (media-2) of the AoU long-read\ sequencing preprint. Access to the full AoU dataset requires registration\ through the All of\ Us Research Hub.\
\ \Credits
\\ Thanks to Garimella et al. and the All of Us Research Program for making their\ structural variant annotations publicly available.\
\ \References
\ \ \ \\
Garimella KV, Li Q, Wertz J, Lee SK, Cunial F, Huang Y, Mostovoy Y, Lorig-Roach R, English A, Su H\
et al.\
\
Population-scale Long-read Sequencing in the All of Us Research Program.\
medRxiv. 2025 Oct 5;.\
PMID: 41256123; PMC:
SV len: $svLen
Ins len: $insLen
AC (approx): $AC
AF (African): $afAfr
AF (European): $afEur\ parent longReadVariants\ shortLabel AoU 1027 SVs\ skipEmptyFields on\ track aou1kSv\ type bigBed 9 +\ visibility hide\ aprSv Arab APR 53 SVs bigBed 9 + Structural Variants from the Arab Pangenome Reference (53 UAE-resident Arab samples) 0 100 0 0 0 127 127 127 0 0 0
Description
\ \\ This track displays structural variants (SVs), at least 50 bp long\ (deletions, insertions, and complex substitutions), from the Arab Pangenome\ Reference (APR), a pangenome graph built from 53 UAE-resident Arab\ individuals drawn from eight countries (UAE, Saudi Arabia, Oman, Jordan,\ Egypt, Morocco, Syria, Yemen). Each bubble in the graph that contains an\ SV-sized alternative allele is shown as a single variant site, with allele\ counts aggregated across the 53 samples (the GRCh38 reference haplotype,\ present as an extra sample column in the source VCF, is excluded from the\ aggregation).
\ \\ The APR pangenome was built on the T2T-CHM13v2 reference. Variants are\ shown natively on the hs1 browser and lifted to hg38 using\ the UCSC hs1ToHg38.over.chain.gz chain; variants that do not lift\ cleanly (often in T2T-added euchromatic sequence) are omitted from the\ hg38 version of the track.
\ \Display Conventions and Configuration
\ \Items are colored by SV type:
\- \
- INS insertion (net ALT longer by ≥50 bp) \
- DEL deletion (net REF longer by ≥50 bp) \
- CPX complex substitution (similar-length REF and ALT but at least one ≥50 bp) \
- MIXED snarl whose alt alleles belong to different classes \
Each item spans from the start of REF to its end on the reference.\ The name field is the graph snarl ID (e.g. <951452<1012008),\ which identifies the variant site in the APR pangenome graph.
\ \Per-site Alt-allele Aggregation
\ \\ The source VCF is multi-allelic: a single graph snarl appears as one row\ with a comma-separated ALT list. For this track, each ALT is classified\ individually using the 50 bp threshold, and the row is emitted as a single\ bed item with:
\- \
- svType: the common class, or MIXED if alts disagree; \
- svLen: reference span (chromEnd - chromStart); \
- insLen: maximum inserted-sequence length across passing INS alts (0 otherwise); \
- AC: sum of per-alt allele counts (AC) that passed; \
- numAlts: number of alt alleles that passed the 50 bp filter. \
Rows whose alts are all smaller than 50 bp are not shown.
\ \Methods
\ \\ Nassir et al. 2025 built the Arab Pangenome Reference (APR) from 53\ UAE-resident Arab individuals drawn from eight countries, sequenced with\ ~35x PacBio HiFi on Sequel IIe/Revio (30-h movies), ~54x Oxford Nanopore\ ultralong reads on R10.4.1 PromethION flow cells (96-h runs), and ~65x\ Hi-C (Illumina NovaSeq 6000). Haplotype-phased de novo assemblies were\ produced with hifiasm v0.19.5 (primary) and Verkko v1.3.1 (for\ comparison), with a median N50 of 124 Mb. The pangenome graph was built\ with Minigraph-Cactus seeded on T2T-CHM13v2 and augmented with GRCh38,\ and SVs were extracted by graph deconstruction. The released decomposed\ VCF (apr_review_v1_2902_chm13.vcf.gz) contains ~21 million\ variants on CHM13v2 contigs; after filtering to alt alleles with ≥50 bp\ length difference and collapsing the alts of each snarl into a single\ site, the APR SV track is obtained. Variants are shown natively on hs1\ and lifted to hg38 with the UCSC hs1ToHg38.over.chain.gz chain\ (variants not lifting cleanly are omitted from the hg38 version).
\ \\ The source APR VCF was downloaded from the Mohammed Bin Rashid\ University SharePoint page,\ \ mbru.ac.ae/the-arab-pangenome-reference; the accompanying project\ source code is at\ \ github.com/muddinmbru/arab_pangenome_reference.
\ \\ The step-by-step build commands (download, graph-VCF conversion, liftOver,\ bigBed build) are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\ \The data can be explored interactively with the\ Table Browser or\ Data Integrator, and accessed from\ scripts via our API\ (track=aprSv).
\ \For automated download, the bigBed files are at\ \ http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/apr.bb (native) and\ \ http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/apr.bb (lifted).
\ \\ The original APR pangenome VCF and assemblies can be downloaded from\ \ https://www.mbru.ac.ae/the-arab-pangenome-reference/,\ and the project source code is at\ \ https://github.com/muddinmbru/arab_pangenome_reference.
\ \Credits
\ \Thanks to the Arab Pangenome Reference team at Mohammed Bin Rashid\ University (Dubai), led by Mohammed Uddin, for producing and releasing\ the pangenome and its variant calls.
\ \References
\ \ \\
Nassir N, Almarri MA, Kumail M, Mohamed N, Balan B, Hanif S, AlObathani M, Jamalalail B, Elsokary H,\
Kondaramage D et al.\
\
A draft UAE-based Arab pangenome reference.\
Nat Commun. 2025 Jul 24;16(1):6747.\
PMID: 40707445; PMC:
SV len: $svLen
Ins len: $insLen
AC: $AC/$alleleNumber
AF: $alleleFreq
Samples: $numSamples
Alts: $numAlts\ parent longReadVariants\ shortLabel Arab APR 53 SVs\ skipEmptyFields on\ track aprSv\ type bigBed 9 +\ visibility hide\ denisovan Arcseqhub Denisovan vcfTabix Ancient Hominids: Arcseqhub Denisovan VCF Variants 3 100 0 0 0 127 127 127 0 0 0
Description
\\
This container track contains genome variants from ancient hominids, from DNA\
samples extracted from Denisovan and Neanderthal, provided by the database
Display Conventions
\\ Variants that differ from human are highlighted. Click onto a variant to see more details.\
\ \Data Access
\\ The data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track name is\ "denisovan" and "neanderthal".
\ \\ For automated download and analysis, the genome annotation is stored in a tabix-indexed VCF file that\ can be downloaded from\ our download server.\ The files for this track are called denisovan.hg38.filt.vcf.gz and neanderthal.hg38.filt.vcf.gz. \ Various command line tools exist for working with VCF files. Users without command line experience can use the Galaxy website, by exporting the data directly from our table browser to Galaxy.\
\ \Methods
\\ Liang et al (see below) realigned the original sequencing reads to the hg38 and\ T2T CHM13 assemblies. UCSC removed positions from the VCF without an alternate\ allele to show only variants that are present in the ancient genomes and loaded the VCFs.\
\ \Credits
\\ We thank the Arcseqhub authors for making the data available.\
\ \References
\\
Liang SA, Ren T, Zhang J, He J, Wang X, Jiang X, He Y, McCoy RC, Fu Q, Akey JM et al.\
\
A refined analysis of Neanderthal-introgressed sequences in modern humans with a complete reference\
genome.\
Genome Biol. 2025 Feb 17;26(1):32.\
PMID: 39962554; PMC:
Description
\\
This container track contains genome variants from ancient hominids, from DNA\
samples extracted from Denisovan and Neanderthal, provided by the database
Display Conventions
\\ Variants that differ from human are highlighted. Click onto a variant to see more details.\
\ \Data Access
\\ The data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track name is\ "denisovan" and "neanderthal".
\ \\ For automated download and analysis, the genome annotation is stored in a tabix-indexed VCF file that\ can be downloaded from\ our download server.\ The files for this track are called denisovan.hg38.filt.vcf.gz and neanderthal.hg38.filt.vcf.gz. \ Various command line tools exist for working with VCF files. Users without command line experience can use the Galaxy website, by exporting the data directly from our table browser to Galaxy.\
\ \Methods
\\ Liang et al (see below) realigned the original sequencing reads to the hg38 and\ T2T CHM13 assemblies. UCSC removed positions from the VCF without an alternate\ allele to show only variants that are present in the ancient genomes and loaded the VCFs.\
\ \Credits
\\ We thank the Arcseqhub authors for making the data available.\
\ \References
\\
Liang SA, Ren T, Zhang J, He J, Wang X, Jiang X, He Y, McCoy RC, Fu Q, Akey JM et al.\
\
A refined analysis of Neanderthal-introgressed sequences in modern humans with a complete reference\
genome.\
Genome Biol. 2025 Feb 17;26(1):32.\
PMID: 39962554; PMC:
Description
\Agilent Arrays
\\ The arrays listed in this track are probes from the\ Agilent Catalog Oligonucleotide Microarrays.\
\Please note that more microarray tracks are available on the hg19 genome assembly. \ To view those tracks, please \ click this link for hg19 microarrays.\ Microarrays that are not listed can be added as Custom Tracks with data from the companies.\
\ \\ Agilent's oligonucleotide CGH (Comparative Genomic Hybridization) platform enables the\ study of genome-wide DNA copy number changes at a high resolution. The CGH probes on Agilent\ CGH microarrays are 60-mer oligonucleotides synthesized in situ using Agilent's inkjet\ SurePrint technology. The probes represented on the Agilent CGH microarrays have been\ selected using algorithms developed specifically for the CGH application, assuring optimal\ performance of these probes in detecting DNA copy number changes.\
\ \Illumina 450k and 850k Methylation Arrays
\\ With the Infinium MethylationEPIC BeadChip Kit, researchers can interrogate over 850,000\ methylation sites quantitatively across the genome at single-nucleotide resolution. Multiple\ samples, including FFPE, can be analyzed in parallel to deliver high-throughput power while\ minimizing the cost per sample. These tracks show positions being measured on the Illumina 450k and\ 850k (EPIC) microarray tracks, not the probe locations themselves. Contact us\ or Illumina if you need the probe locations directly. More information about\ the arrays can be found on the\ Infinium MethylationEPIC Kit website.\
\ Note: The 450k track on hg38 contains 128,989 regions representing the target regions, not the probes\ themselves.
\ \Illumina CytoSNP 850K Probe Array
\\ The Infinium CytoSNP-850K v1.2 BeadChip provides comprehensive coverage of\ cytogenetically relevant genes on a proven platform, helping researchers find valuable information\ that may be missed by other technologies. It contains approximately 850,000 empirically selected\ single nucleotide polymorphisms (SNPs) spanning the entire genome with enriched coverage for 3,262\ genes of known cytogenetics relevance in both constitutional and cancer applications. \
\ \Affymetrix Cytoscan HD GeneChip Array
\\ The CytoScan HD Array, which is included in the\ CytoScan HD Suite, provides the broadest coverage and highest performance for\ detecting chromosomal aberrations. CytoScan HD Suite has greater than 99% sensitivity and can\ reliably detect 25-50kb copy number changes across the genome at high specificity with\ single-nucleotide polymorphism (SNP) allelic corroboration. With more than 2.6 million copy number\ markers, CytoScan HD Suite covers all OMIM and RefSeq genes.\
\ \Bionano DLE-1 CTTAAG sites
\ \\ Bionano Laboratories provides access to Optical Genome Mapping (OGM) data for projects across a variety of\ applications for researchers, clinicians, and pharmaceutical companies.
\This track shows the CTTAAG sites used by the \ Bionano Optical Genome Mapping system,\ an assay to detect structural variants.\
\ \Display Conventions and Configuration
\ \\ Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \ \Methods
\\ The Agilent arrays were downloaded from their \ Agilent SureDesign website tool on March 2022.
\\ The Illumina 450k and 850k (EPIC) tracks were created using a few columns from the\ Infinium MethylationEPIC v1.0 B5 Manifest File (CSV Format)\ and was then converted into a bigBed.
\\ The Illumina CytoSNP-850K track was created by downloading the\ CytoSNP-850K v1.2 Manifest File (CSV Format) (GRCh38) file and then converted\ into a bigBed file.\
\\ The Affymetrix Cytoscan HD GeneChip Array track was created by converting the \ CytoScanHD_Accel_Array.na36.bed.zip\ into a bigBed file.\
\\ The Bionano track was created by receiving the BED files from\ \ apang@bionano.\ com\ \ and converted to bigBed files using the bedToBigBed tool.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API \ or downloaded from our \ Downloads site. Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\
\ \Credits
\\ Thanks to the Agilent and Illumina support teams for sharing the data and the UCSC Genome Browser\ engineers for configuring the data.
\\ Thanks to Andy Pang from Bionano Genomics for providing the BED data file.
\ varRep 1 compositeTrack on\ group varRep\ longLabel Microarray Probesets and OGM sites\ shortLabel Array Probesets\ track genotypeArrays\ type bigBed 4\ visibility hide\ gnomADPextArtery_Aorta Artery-Aorta bigWig 0 1 gnomAD pext Artery-Aorta 0 100 255 85 85 255 170 170 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Artery_Aorta.bw\ color 255,85,85\ longLabel gnomAD pext Artery-Aorta\ parent gnomadPext off\ shortLabel Artery-Aorta\ track gnomADPextArtery_Aorta\ visibility hide\ gnomADPextArtery_Coronary Artery-Coronary bigWig 0 1 gnomAD pext Artery-Coronary 0 100 255 170 153 255 212 204 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Artery_Coronary.bw\ color 255,170,153\ longLabel gnomAD pext Artery-Coronary\ parent gnomadPext off\ shortLabel Artery-Coronary\ track gnomADPextArtery_Coronary\ visibility hide\ gnomADPextArtery_Tibial Artery-Tibial bigWig 0 1 gnomAD pext Artery-Tibial 0 100 255 0 0 255 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Artery_Tibial.bw\ color 255,0,0\ longLabel gnomAD pext Artery-Tibial\ parent gnomadPext off\ shortLabel Artery-Tibial\ track gnomADPextArtery_Tibial\ visibility hide\ gold Assembly bed 3 + Assembly from Fragments 0 100 150 100 30 230 170 40 0 0 0Description
\\ This track shows the contigs used to construct the GRCh38 (hg38) genome assembly, as defined in the\ AGP file delivered with the sequence. \ For information on the AGP file format, see the NCBI \ AGP Specification. The NCBI website also provides an \ overview of genome assembly procedures, as well as \ specific information about the hg38 assembly.\
\\ In dense mode, this track depicts the contigs that make up the \ currently viewed scaffold. \ Contig boundaries are distinguished by the use of alternating gold and brown \ coloration. Where gaps\ exist between contigs, spaces are shown between the gold and brown\ blocks. The relative order and orientation of the contigs\ within a scaffold is always known; therefore, a line is drawn in the graphical\ display to bridge the blocks.
\\ Component types found in this track (with counts of that type in parenthesis):\
- \
- F - finished sequence (35,798) \
- O - other sequence (8,536) \
- W - whole genome shotgun (764) \
- P - pre draft (16) \
- D - draft sequence (8) \
- A - active finishing (8) \
\ In addition to the standard nucleotide codes, the raw sequence files from NCBI also include\ IUPAC ambiguity codes for bases that could not be positively identified as A, C, G or T (see\ Wikipedia's IUPAC notation article for more information). As part of the UCSC\ assembly creation process, all IUPAC ambiguity characters are converted to Ns. The FASTA files\ available for download from UCSC reflect this. The raw data files containing the original IUPAC\ characters can be downloaded from the NCBI\ FTP site.\
\ \\ The following table lists the counts by chromosome of the various IUPAC ambiguity characters\ in the original NCBI data files:\
\ \\
| chromosome | \ | |||||||||||||||||
| \ | \ | 1 | \2 | \3 | \6 | \7 | \9 | \10 | \12 | \13 | \16 | \17 | \21 | \22 | \X | \Y | \\ | Total | \
| code | \ | |||||||||||||||||
| B | \\ | \ | \ | 1 | \\ | \ | \ | 1 | \\ | \ | \ | \ | \ | \ | \ | \ | \ | 2 | \
| K | \\ | \ | 1 | \\ | \ | \ | \ | 4 | \\ | 1 | \\ | 2 | \\ | \ | \ | \ | \ | 8 | \
| M | \\ | 1 | \1 | \\ | \ | \ | \ | 3 | \1 | \\ | \ | \ | 2 | \\ | \ | \ | \ | 8 | \
| R | \\ | 1 | \1 | \1 | \\ | 1 | \1 | \13 | \\ | \ | 1 | \3 | \1 | \2 | \1 | \1 | \\ | 27 | \
| S | \\ | \ | \ | \ | \ | 1 | \\ | 1 | \\ | \ | \ | 1 | \\ | \ | 1 | \1 | \\ | 5 | \
| W | \\ | \ | 2 | \2 | \\ | \ | \ | 6 | \\ | \ | \ | 1 | \\ | 1 | \1 | \1 | \\ | 14 | \
| Y | \\ | \ | 4 | \3 | \1 | \2 | \2 | \8 | \2 | \2 | \\ | 5 | \\ | 2 | \2 | \2 | \\ | 35 | \
| \ | ||||||||||||||||||
| Total | \\ | 2 | \9 | \7 | \1 | \4 | \3 | \36 | \3 | \3 | \1 | \12 | \3 | \5 | \5 | \5 | \\ | 99 | \
Description
\\ This is a container track for data related to the genome assembly. \ It contains tracks about the assembly identifiers, certain clones, and STS markers. \ Click into any of the sub-tracks to see information\ details on the specific annotations.
\ map 0 cartVersion 4\ group map\ longLabel Assembly identifiers, clones, and markers\ shortLabel Assembly Tracks\ superTrack on\ track assemblyContainer\ augustusGene AUGUSTUS genePred AUGUSTUS ab initio gene predictions v3.1 3 100 180 0 0 217 127 127 0 0 0Description
\ \\ This track shows ab initio predictions from the program\ AUGUSTUS (version 3.1).\ The predictions are based on the genome sequence alone.\
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Methods
\ \\ Statistical signal models were built for splice sites, branch-point\ patterns, translation start sites, and the poly-A signal.\ Furthermore, models were built for the sequence content of\ protein-coding and non-coding regions as well as for the length distributions\ of different exon and intron types. Detailed descriptions of most of these different models\ can be found in Mario Stanke's\ dissertation.\ This track shows the most likely gene structure according to a\ Semi-Markov Conditional Random Field model.\ Alternative splicing transcripts were obtained with\ a sampling algorithm (--alternatives-from-sampling=true --sample=100 --minexonintronprob=0.2\ --minmeanexonintronprob=0.5 --maxtracks=3 --temperature=2).\
\ \\ The different models used by Augustus were trained on a number of different species-specific\ gene sets, which included 1000-2000 training gene structures. The --species option allows\ one to choose the species used for training the models. Different training species were used\ for the --species option when generating these predictions for different groups of\ assemblies.\
| Assembly Group | \ \ \Training Species | \ \
| Fish | \ \ \zebrafish\ \ |
| Birds | \ \ \chicken\ \ |
| Human and all other vertebrates | \ \ \human\ \ |
| Nematodes | \ \ \caenorhabditis | \ \
| Drosophila | \ \ \fly | \ \
| A. mellifera | \ \ \honeybee1 | \ \
| A. gambiae | \ \ \culex | \ \
| S. cerevisiae | \ \ \saccharomyces | \ \
\ This table describes which training species was used for a particular group of assemblies.\ When available, the closest related training species was used.\
\ \Credits
\ \ Thanks to the\ Stanke lab\ for providing the AUGUSTUS program. The training for the chicken version was\ done by Stefanie König and the training for the\ human and zebrafish versions was done by Mario Stanke.\ \References
\ \\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\
\ \\ Stanke M, Waack S.\ \ Gene prediction with a hidden Markov model and a new intron submodel.\ Bioinformatics. 2003 Oct;19 Suppl 2:ii215-25.\ PMID: 14534192\
\ genes 1 baseColorDefault genomicCodons\ baseColorUseCds given\ color 180,0,0\ group genes\ html ../../augustusGene\ longLabel AUGUSTUS ab initio gene predictions v3.1\ parent genePredArchive\ shortLabel AUGUSTUS\ track augustusGene\ type genePred\ visibility pack\ avada Avada Variants bigBed 9 + Avada Variants extracted from full text publications 1 100 0 0 0 127 127 127 0 0 0Description
\The tracks that are listed here contain genetic variants and links to scientific publications that \ mention them.
\- \
- The Mastermind track, created by Genomenon, has been retired at the\ request of the data provider and is no longer updated or displayed. \
- The VarChat \ track was created by enGenome and links to its proprietary \ software, VarChat, with an unknown false positive rate. \
- The AVADA track was created in the Bejerano lab at\ Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning\ methods and was evaluated to have a false positive rate of around 50% in their study. \
- The PubTator rsIDs track was created using \ PubTator 3 data. \
- The Varaico tracks were created using literature mining in a fashion similar to AVADA. Coloring\ is a gradient between blue and red, and represent the number of publications per variant. See\ the Varaico website for more details. \
\ For additional information please click on the hyperlink of the respective track above.\
Display conventions
\\ By default, each variant is labeled with the nucleotide change. Hover over the\ feature to see more information, explained on the track details page of the particular track\ or when clicking onto the feature.
\Credits
\\ For data provenance, access and descriptions, please click the documentation via the link above.\
\ phenDis 1 bigDataUrl /gbdb/hg38/bbi/avada.bb\ dataVersion release 1\ exonNumbers off\ html varsInPubs.html\ longLabel Avada Variants extracted from full text publications\ mouseOver Variant: $variantEnsembl ID: $ensId
Title of Publication: $title
Reference: $ref
Authors: $authors
Pubmed ID: $pmid\ noScoreFilter on\ parent varsInPubs pack\ pennantIcon snowflake.png ../goldenPath/newsarch.html#052125 "The AVADA track is no longer updated. See VARAICO for the latest variants mined from papers."\ shortLabel Avada Variants\ track avada\ type bigBed 9 +\ urls pmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" doi="https://doi.org/$$" ensId="http://grch37.ensembl.org/Homo_sapiens/Gene/Summary?g=$$" entrezs="https://www.ncbi.nlm.nih.gov/gene/$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility dense\ cons470wayViewphyloP Basewise Conservation (phyloP) bed 4 Hiller Lab 470 Mammals - 470 mammalian genomes aligned with Multiz by Michael Hiller's Group, 2 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Hiller Lab 470 Mammals - 470 mammalian genomes aligned with Multiz by Michael Hiller's Group,\ parent cons470way\ shortLabel Basewise Conservation (phyloP)\ track cons470wayViewphyloP\ view phyloP\ viewLimits -20.0:11.936\ viewLimitsMax -20:11.936\ visibility full\ cons447wayViewphyloP Basewise Conservation (phyloP) bed 4 Zoonomia+Primates 447 - 447 mammals, including 233 primates, aligned with Cactus, for Kuderna et al. 2023 2 100 0 0 0 127 127 127 0 0 0 compGeno 1 longLabel Zoonomia+Primates 447 - 447 mammals, including 233 primates, aligned with Cactus, for Kuderna et al. 2023\ parent cons447way\ shortLabel Basewise Conservation (phyloP)\ track cons447wayViewphyloP\ view phyloP\ viewLimits -20.0:11.936\ visibility full\ bionano Bionano DLE-1 bigBed Bionano DLE-1 CTTAAG sites 0 100 0 0 0 127 127 127 0 0 0 varRep 1 bigDataUrl /gbdb/hg38/bionano/hg38_CTTAAG_0kb_0labels.bb\ longLabel Bionano DLE-1 CTTAAG sites\ parent genotypeArrays on\ shortLabel Bionano DLE-1\ track bionano\ type bigBed\ bismap Bismap bigWig Single-read and multi-read mappability after bisulfite conversion 2 100 0 0 0 127 127 127 0 0 0
Description
\\ These tracks indicate regions with uniquely mappable reads of particular lengths before and after\ bisulfite conversion. Both Umap and Bismap tracks contain single-read mappability and multi-read\ mappability tracks for four different read lengths: 24 bp, 36 bp, 50 bp, and 100 bp.
\\ You can use these tracks for many purposes, including filtering unreliable signal from\ sequencing assays. The Bismap track can help filter unreliable signal from sequencing assays\ involving bisulfite conversion, such as whole-genome bisulfite sequencing or reduced representation\ bisulfite sequencing.
\ \ \Bismap single-read and multi-read mappability
\- \
- Bismap single-read mappability \
- \
These tracks mark any region of the bisulfite-converted genome that is uniquely mappable by\ at least one k-mer on the specified strand. Mappability of the forward strand was\ generated by converting all instances of cytosine to thymine. Similarly, mappability of the\ reverse strand was generated by converting all instances of guanine to adenine.
\To calculate the single-read mappability, you must find the overlap of a given region with\ the region that is uniquely mappable on both strands. Regions not uniquely mappable on both\ strands or have a low multi-read mappability might bias the downstream analysis.
\
- Bismap multi-read mappability \
- \
These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable. Multi-read mappability track is calculated for\ k-mers that are uniquely mappable on both strands, and thus there is no strand\ specification.
\
Umap single-read and multi-read mappability
\- \
- Umap single-read mappability \
- \
These tracks mark any region of the genome that is uniquely mappable by at least one\ k-mer. To calculate the single-read mappability, you must find the overlap of a given\ region with this track.
\
- Umap multi-read mappability \
- \
These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable.
\
For greater detail and explanatory diagrams, see the\ preprint, the\ Umap and Bismap project website, or the\ Umap and Bismap software\ documentation.\ \
Data Access
\\ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, genome annotation is stored in a bigBed\ or bigWig file that can be downloaded from the\ download\ server. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed or bigWigToWig, which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found here.\ The tool can also be used to obtain only features within a given range, for example:
\ bigBedToBed -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb stdout\\ bigWigToWig -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ stdout\
\ Please refer to our mailing list archives for questions, or our\ Data Access FAQ for more\ information.
\ \Credits
\\ Anshul Kundaje (Stanford\ University) created the original Umap software in MATLAB. The original Umap repository is available\ here.\ Mehran Karimzadeh (Michael Hoffman\ lab, Princess Margaret Cancer Centre) implemented the Python version of Umap and added features,\ including Bismap.
\ \References
\\ Karimzadeh M, Ernst C, Kundaje A, Hoffman MM.,\ Umap and Bismap:\ quantifying genome and methylome mappability\ bioRxiv bioRxiv, p. 095463, 2016.; doi: https://doi.org/10.1101/095463.
\ map 0 compositeTrack on\ group map\ html mappability\ longLabel Single-read and multi-read mappability after bisulfite conversion\ noInherit on\ parent mappability\ shortLabel Bismap\ subGroup1 view Views SR=Single-read MR=Multi-read\ track bismap\ type bigWig\ visibility full\ gnomADPextBladder Bladder bigWig 0 1 gnomAD pext Bladder 0 100 170 0 0 212 127 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Bladder.bw\ color 170,0,0\ longLabel gnomAD pext Bladder\ parent gnomadPext off\ shortLabel Bladder\ track gnomADPextBladder\ visibility hide\ bloodHao Blood (PBMC) Hao Peripheral blood mononuclear cells (PBMC) from Hao et al 2020 0 100 0 0 0 127 127 127 0 0 0Description
\\
This track displays data from
\ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Method
\\ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
Description
\\
This track displays data from
\ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Method
\\ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
Description
\\
This track displays data from
\ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Method
\\ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
Description
\\
This track displays data from
\ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Method
\\ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
Description
\\
This track displays data from
\ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Method
\\ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
Description
\\
This track displays data from
\ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Method
\\ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
Description
\\
This track displays data from
\ This track collection contains six bar chart tracks of RNA expression in PBMCs\ where cells are grouped by cell type level 1 \ (Blood PBMC Cells), cell type level 2 \ (Blood PBMC Cells 2), \ cell type level 3 (Blood PBMC Cells 3), donor \ (Blood PBMC Donor), phase of cell cycle \ (Blood PBMC Phase), or time into experiment \ (Blood PBMC Time). The default track displayed \ is Blood PBMC Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Method
\\ PBMC samples were taken from 8 volunteers ages 20-49 enrolled in an HIV\ vaccine trial (NCT01578889). A total of 24 blood samples were collected at 3\ time points: day 0 (the day before), day 3, and day 7 after the administration\ of a VSV-vectored HIV vaccine. Samples were collected at these different time\ points to minimize batch effects. Cells were then divided into separate\ aliquots for modified versions of the 3' CITE-seq and 5' ECCITE-seq staining\ protocols. In the 3' CITE-seq staining protocol, the samples are simultaneously\ stained with the antibody and unique hashtag. Whereas, 5' ECCITE-seq samples\ are stained first with a unique hashtag. 3' libraries were loaded into 8 lanes\ of a 10x Genomics Chip B using the 10x Genomics 3' v3 kit. 5' libraries\ were loaded into 2 lanes of a 10x Genomics Chip A using the 10x Genomics V(D)J\ kit (v1). Both 3' and 5' libraries were pooled together and sequenced on an\ Illumina Novaseq S4 flowcell. In total, 210,911 cells were profiled after \ quality control and doublet filtration.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yuhan Hao, Stephanie Hao, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
Description
\\ This track shows a multiple alignment of 447 mammalian genomes made with Cactus and constraint scores derived from it.\ To build this track, the Zoonomia 241 alignment was used as a starting point, all primates and a few outdated\ assemblies were removed and an alignment between 233 newly sequenced primates was added. See the Methods section below for details, and \ also the publications by Kuderna et al. 2023 in the Reference section.\ All alignments and operations on them were performed using the Cactus toolkit.\
\ \\ This track shows four phyloP conservation score subtracks computed from the\ 447-way Cactus alignment (and a primates subset of it):\
- \
- 447 phyloP REV: all 447 species, REV substitution model.\
- 447 phyloP SSREV: all 447 species, strand-symmetric reversible\ (SSREV) substitution model.\
- 447 phyloP primates: 233 primates subset, SSREV substitution\ model.\
- 447 phyloP primates LRT: 233 primates subset, likelihood-ratio\ test scoring.\
\ The SSREV substitution model is strand-symmetric, which avoids\ strand-dependent bias in single-base conservation scores (Pollard\ et al. 2010, supplementary section 2.4) -- relevant when analyzing\ transcript-related nucleotides such as splice sites, miRNA seed regions, or\ other strand-specific sequence features. The REV model is the standard\ phyloP model and is appropriate for general genome-wide conservation\ analysis. The primates subset tracks restrict scoring to the 233 primate\ genomes included in the alignment, useful when conservation across\ non-primate mammals would dilute primate-specific signal.\
\ \Data Access
\\ Downloads for data in this track are available from the directory:\
- \
- \ Cactus 447-way alignments (MAF format), and phylogenetic trees\
- \ PhyloP conservation (WIG format)\
Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. Missing sequence in any\ assembly is highlighted in the track display by regions of yellow when zoomed\ out and by Ns when displayed at base level. The following conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\
- \
- \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
- \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
- \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
- Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\
\ Codon translation uses the following gene tracks as the basis for translation:\
\ \\
\ Table 2. Gene tracks used for codon translation.\\ Gene Track Species \ RefSeq Genes Bos mutus, Canis lupus familiaris, Carlito syrichta, Cercocebus atys, Chinchilla lanigera, Colobus angolensis, Condylura cristata, Dipodomys ordii, Elephantulus edwardii, Eptesicus fuscus, Felis catus, Felis catus fca126, Fukomys damarensis, Homo sapiens, Ictidomys tridecemlineatus, Macaca mulatta, Macaca nemestrina, Marmota marmota, Microtus ochrogaster, Miniopterus natalensis, Mus musculus, Mus pahari, Myotis brandtii, Myotis davidii, Myotis lucifugus, Odobenus rosmarus, Orcinus orca, Otolemur garnettii, Peromyscus maniculatus, Piliocolobus tephrosceles, Propithecus coquerelli, Pteropus alecto, Pteropus vampyrus, Rattus norvegicus, Rhinopithecus roxellana, Saimiri boliviensis, Sorex araneus, Sus scrofa, Theropithecus gelada, Tupaia chinensis \ Ensembl Genes Cavia aperea \ Augustus Genes Eidolon helvum, Pteronotus parnellii \ no annotation Acinonyx jubatus, Acomys cahirinus, Ailuropoda melanoleuca, Ailurus fulgens, Allactaga bullata, Allenopithecus nigroviridis, Allochrocebus lhoesti, Allochrocebus preussi, Allochrocebus solatus, Alouatta belzebul, Alouatta caraya, Alouatta discolor, Alouatta juara, Alouatta macconnelli, Alouatta nigerrima, Alouatta palliata, Alouatta puruensis, Alouatta seniculus, Ammotragus lervia, Anoura caudifer, Antilocapra americana, Aotus azarae, Aotus griseimembra, Aotus nancymaae, Aotus trivirgatus, Aotus vociferans, Aplodontia rufa, Arctocebus calabarensis, Artibeus jamaicensis, Ateles geoffroyi_a, Ateles geoffroyi_b, Ateles belzebuth, Ateles chamek, Ateles marginatus, Ateles paniscus, Avahi laniger, Avahi peyrierasi, Balaenoptera acutorostrata, Balaenoptera bonaerensis, Beatragus hunteri, Bison bison, Bos indicus, Bos taurus, Bubalus bubalis, Cacajao ayresi, Cacajao calvus, Cacajao hosomi, Cacajao melanocephalus, Callibella humilis, Callimico goeldii, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Camelus bactrianus, Camelus dromedarius, Camelus ferus, Canis lupus VD, Canis lupus dingo, Canis lupus orion, Capra aegagrus, Capra hircus, Capromys pilorides, Carollia perspicillata, Castor canadensis, Catagonus wagneri, Cavia porcellus, Cavia tschudii, Cebuella niveiventris, Cebuella pygmaea, Cebus albifrons, Cebus olivaceus, Cebus unicolor, Cephalopachus bancanus, Ceratotherium simum, Ceratotherium simum cottoni, Cercocebus chrysogaster, Cercocebus lunulatus, Cercocebus torquatus, Cercopithecus ascanius, Cercopithecus cephus, Cercopithecus diana, Cercopithecus hamlyni, Cercopithecus lowei, Cercopithecus albogularis, Cercopithecus mona, Cercopithecus neglectus, Cercopithecus nictitans, Cercopithecus petaurista, Cercopithecus pogonias, Cercopithecus roloway, Chaetophractus vellerosus, Cheirogaleus major, Cheirogaleus medius, Cheracebus lucifer, Cheracebus lugens, Cheracebus regulus, Cheracebus torquatus, Chiropotes albinasus, Chiropotes israelita, Chiropotes sagulatus, Chlorocebus aethiops, Chlorocebus pygerythrus, Chlorocebus sabaeus, Choloepus didactylus, Choloepus hoffmanni, Chrysochloris asiatica, Colobus guereza, Colobus polykomos, Craseonycteris thonglongyai, Cricetomys gambianus, Cricetulus griseus, Crocidura indochinensis, Cryptoprocta ferox, Ctenodactylus gundi, Ctenomys sociabilis, Cuniculus paca, Dasyprocta punctata, Dasypus novemcinctus, Daubentonia madagascariensis, Delphinapterus leucas, Desmodus rotundus, Dicerorhinus sumatrensis, Diceros bicornis, Dinomys branickii, Dipodomys stephensi, Dolichotis patagonum, Echinops telfairi, Elaphurus davidianus, Ellobius lutescens, Ellobius talpinus, Enhydra lutris, Equus asinus, Equus caballus, Equus przewalskii, Erinaceus europaeus, Erythrocebus patas, Eschrichtius robustus, Eubalaena japonica, Eulemur albifrons, Eulemur collaris, Eulemur coronatus, Eulemur flavifrons, Eulemur fulvus, Eulemur macaco, Eulemur mongoz, Eulemur rubriventer, Eulemur rufus, Eulemur sanfordi, Felis nigripes, Galago moholi, Galago senegalensis, Galagoides demidoff, Galeopterus variegatus, Giraffa tippelskirchi, Glis glis, Gorilla beringei, Gorilla gorilla, Graphiurus murinus, Hapalemur alaotrensis, Hapalemur gilberti, Hapalemur griseus, Hapalemur meridionalis, Hapalemur occidentalis, Helogale parvula, Hemitragus hylocrius, Heterocephalus glaber, Heterohyrax brucei, Hippopotamus amphibius, Hipposideros armiger, Hipposideros galeritus, Hoolock leuconedys, Hyaena hyaena, Hydrochoerus hydrochaeris, Hylobates abbotti, Hylobates agilis, Hylobates klossii, Hylobates pileatus, Hylobates muelleri, Hylobates pileatus, Hystrix cristata, Indri indri, Inia geoffrensis, Jaculus jaculus, Kogia breviceps, Lagothrix lagothricha, Lasiurus borealis, Lemur catta, Leontocebus fuscicollis, Leontocebus illigeri, Leontocebus nigricollis, Leontopithecus chrysomelas, Leontopithecus rosalia, Lepilemur ankaranensis, Lepilemur dorsalis, Lepilemur ruficaudatus, Lepilemur septentrionalis, Leptonychotes weddellii, Lepus americanus, Lipotes vexillifer, Lophocebus aterrimus, Loris lydekkerianus, Loris tardigradus, Loxodonta africana, Lycaon pictus, Macaca arctoides, Macaca assamensis, Macaca cyclopis, Macaca fascicularis, Macaca fuscata, Macaca leonina, Macaca maura, Macaca nigra, Macaca radiata, Macaca siberu, Macaca silenus, Macaca thibetana, Macaca tonkeana, Macroglossus sobrinus, Mandrillus leucophaeus, Mandrillus sphinx, Manis javanica, Manis pentadactyla, Megaderma lyra, Mellivora capensis, Meriones unguiculatus, Mesocricetus auratus, Mesoplodon bidens, Mico argentatus, Mico humeralifer, Mico schneideri, Microcebus murinus, Microgale talazaci, Micronycteris hirsuta, Miniopterus schreibersii, Miopithecus ogouensis, Mirounga angustirostris, Mirza zaza, Monodon monoceros, Mormoops blainvillei, Moschus moschiferus, Mungos mungo, Murina feae, Mus caroli, Mus spretus, Muscardinus avellanarius, Mustela putorius, Myocastor coypus, Myotis myotis, Myrmecophaga tridactyla, Nannospalax galili, Nasalis larvatus, Neomonachus schauinslandi, Neophocaena asiaeorientalis, Noctilio leporinus, Nomascus annamensis, Nomascus concolor, Nomascus gabriellae, Nomascus siki_a, Nomascus siki_b, Nyctereutes procyonoides, Nycticebus bengalensis, Nycticebus coucang, Nycticebus pygmaeus, Ochotona princeps, Octodon degus, Odocoileus virginianus, Okapia johnstoni, Ondatra zibethicus, Onychomys torridus, Orycteropus afer, Oryctolagus cuniculus, Otocyon megalotis, Otolemur crassicaudatus, Ovis aries, Ovis canadensis, Pan paniscus, Pan troglodytes, Panthera onca, Panthera pardus, Panthera tigris, Pantholops hodgsonii, Papio anubis, Papio cynocephalus, Papio hamadryas, Papio kindae, Papio papio, Papio ursinus, Paradoxurus hermaphroditus, Perodicticus ibeanus, Perodicticus potto, Perognathus longimembris, Petromus typicus, Phocoena phocoena, Piliocolobus badius, Piliocolobus gordonorum, Piliocolobus kirkii, Pipistrellus pipistrellus, Pithecia albicans, Pithecia chrysocephala, Pithecia hirsuta, Pithecia mittermeieri, Pithecia pissinattii, Pithecia pithecia, Pithecia vanzolinii, Platanista gangetica, Plecturocebus bernhardi, Plecturocebus brunneus, Plecturocebus caligatus, Plecturocebus cinerascens, Plecturocebus cupreus, Plecturocebus dubius, Plecturocebus grovesi, Plecturocebus hoffmannsi, Plecturocebus miltoni, Plecturocebus moloch, Pongo abelii, Pongo pygmaeus, Presbytis comata, Presbytis mitrata, Procavia capensis, Prolemur simus, Propithecus coronatus, Propithecus diadema, Propithecus edwardsi, Propithecus perrieri, Propithecus tattersalli, Propithecus verreauxi, Psammomys obesus, Pteronura brasiliensis, Puma concolor, Pygathrix cinerea, Pygathrix nigripes, Pygathrix nigripes, Rangifer tarandus, Rhinolophus sinicus, Rhinopithecus bieti, Rhinopithecus strykeri, Rousettus aegyptiacus, Saguinus bicolor, Saguinus geoffroyi, Saguinus imperator, Saguinus inustus, Saguinus labiatus, Saguinus midas, Saguinus mystax, Saguinus oedipus, Saiga tatarica, Saimiri cassiquiarensis, Saimiri macrodon, Saimiri oerstedii, Saimiri sciureus, Saimiri ustus, Sapajus apella, Sapajus macrocephalus, Scalopus aquaticus, Semnopithecus entellus, Semnopithecus hypoleucos, Semnopithecus johnii, Semnopithecus priam, Semnopithecus schistaceus, Semnopithecus vetulus, Sigmodon hispidus, Solenodon paradoxus, Spermophilus dauricus, Spilogale gracilis, Suricata suricatta, Symphalangus syndactylus, Tadarida brasiliensis, Tamandua tetradactyla, Tapirus indicus, Tapirus terrestris, Tarsius lariang, Tarsius wallacei, Thryonomys swinderianus, Tolypeutes matacus, Tonatia saurophila, Trachypithecus auratus, Trachypithecus crepusculus, Trachypithecus cristatus, Trachypithecus francoisi, Trachypithecus geei, Trachypithecus germaini, Trachypithecus hatinhensis, Trachypithecus laotum, Trachypithecus leucocephalus, Trachypithecus melamera, Trachypithecus obscurus, Trachypithecus phayrei, Trachypithecus pileatus, Tragulus javanicus, Trichechus manatus, Tupaia tana, Tursiops truncatus, Uropsilus gracilis, Ursus maritimus, Varecia rubra, Varecia variegata, Vicugna pacos, Vulpes lagopus, Xerus inauris, Zalophus californianus, Zapus hudsonius, Ziphius cavirostris\
Methods
\\ This alignment was created by making three edits (using Cactus) to the\ 241-way mammalian Zoonomia Cactus alignment\ (\ https://cglgenomics.ucsc.edu/data/cactus/).\
- \
- One additional cat genome, "Felis_catus_fca126" (GCA_018350175.1) was\ added as a sister taxa to the existing "Felis_catus" species \
- Five additional canine genomes were also added: canFam4,\ "Canis_lupus_dingo" (GCA_003254725.1), "Canis_lupus_orion"\ (GCA_905319855.2), "Nyctereutes_procyonoides" (GCA_905146905.1) and\ "Otocyon_megalotis" (GCA_017311455.1). "Canis_lupus" from the Zoonomia\ alignment was also renamed "Canis_lupus_VD" to reflect the fact that it\ corresponds to a "village dog" and not "wolf" sample. \
- The 43-species primates clade from the Zoonomia alignment was removed\ and replaced with the 243-way primates alignment from Identification of\ constrained sequence elements across 239 primate genomes, increasing the alignment by 200\ additional primate species. \
phyloP Conservation Scores
\\
phyloP scores were computed from the Cactus 447-way alignment using the\
phyloP program from the\
PHAST package.\
Per-base scores were produced with options\
--method LRT --mode CONACC --wig-scores; positive scores\
indicate conservation under purifying selection, negative scores indicate\
acceleration relative to neutral evolution.\
\
For the all-species tracks, base-composition and substitution-rate\
parameters were estimated from 4-fold degenerate sites using\
phyloFit (PHAST, EM algorithm, medium precision) under either the\
REV or strand-symmetric reversible (SSREV) substitution model. Background\
base frequencies were adjusted with modFreqs so that\
complementary bases (A/T and C/G) appear at equal expected frequencies,\
which is required for strand-symmetric scoring.\
\
For the primates-subset tracks, the alignment was restricted to the 233\
primate species and an independent phyloFit / phyloP run was performed on\
that sub-alignment using the SSREV model. All scores were encoded into\
wiggle format and loaded as either bigWig files (REV all-species,\
primates LRT) or wig SQL tables backed by .wib data files\
(SSREV all-species, SSREV primates).\
Phylogenic tree
\\ The phylogenic tree was established by the research described\ in A global catalog of whole-genome diversity from 233 primate\ species.\ \
Sequences
\\
\\ \ \\
\ count \common \
nameclade \scientific name \
(link to browser when existing)taxon id \
link to NCBI\ 001 human primates catarrhini Homo sapiens/hg38
reference species9606 \ 002 western gorilla primates catarrhini Gorilla gorilla
GCA_900006655.3_Susie39593 \ 003 Sumatran orangutan primates catarrhini Pongo abelii
GCA_002880775.3_Susie_PABv29601 \ 004 Eastern Gorilla primates catarrhini Gorilla beringei 499232 \ 005 chimpanzee primates catarrhini Pan troglodytes
GCA_002880755.3_Clint_PTRv29598 \ 006 Bornean orangutan primates catarrhini Pongo pygmaeus 9600 \ 007 Rhesus monkey primates catarrhini Macaca mulatta
rheMac109544 \ 008 gelada primates catarrhini Theropithecus gelada
GCF_003255815.1_Tgel_1.09565 \ 009 stump-tailed macaque primates catarrhini Macaca arctoides 9540 \ 010 Northern Talapoin Monkey primates catarrhini Miopithecus ogouensis 100488 \ 011 crab-eating macaque primates catarrhini Macaca fascicularis 9541 \ 012 Allen's swamp monkey primates catarrhini Allenopithecus nigroviridis 54135 \ 013 siamang primates catarrhini Symphalangus syndactylus 9590 \ 014 black crested mangabey primates catarrhini Lophocebus aterrimus 75566 \ 015 drill primates catarrhini Mandrillus leucophaeus 9568 \ 016 Bonnet Macaque primates catarrhini Macaca radiata 9548 \ 017 Red-capped Mangabey primates catarrhini Cercocebus torquatus 9530 \ 018 Golden-bellied Mangabey primates catarrhini Cercocebus chrysogaster 75569 \ 019 Owl-faced Monkey primates catarrhini Cercopithecus hamlyni 9536 \ 020 Siberut Macaque primates catarrhini Macaca siberu 244255 \ 021 pig-tailed macaque primates catarrhini Macaca nemestrina
GCF_000956065.1_Mnem_1.09545 \ 022 White-naped Mangabey primates catarrhini Cercocebus lunulatus (Cercocebus atys lunulatus) 75570 \ 023 Tonkean Macaque primates catarrhini Macaca tonkeana 40843 \ 024 Diana Monkey primates catarrhini Cercopithecus diana 36224 \ 025 red guenon primates catarrhini Erythrocebus patas 9538 \ 026 Northern Pig-tailed Macaque primates catarrhini Macaca leonina 90387 \ 027 Moor Macaque primates catarrhini Macaca maura 90383 \ 028 Guinea Baboon primates catarrhini Papio papio 100937 \ 029 hamadryas baboon primates catarrhini Papio hamadryas 9557 \ 030 liontail macaque primates catarrhini Macaca silenus 54601 \ 031 olive baboon primates catarrhini Papio anubis
GCA_000264685.2_Panu_3.09555 \ 032 Roloway Monkey primates catarrhini Cercopithecus roloway 1137049 \ 033 Kinda Baboon primates catarrhini Papio kindae 208091 \ 034 Chacma Baboon primates catarrhini Papio ursinus 36229 \ 035 Sun-tailed Monkey primates catarrhini Allochrocebus solatus 147650 \ 036 golden snub-nosed monkey primates catarrhini Rhinopithecus roxellana
GCF_007565055.1_ASM756505v161622 \ 037 Vervet Monkey primates catarrhini Chlorocebus pygerythrus 60710 \ 038 sooty mangabey primates catarrhini Cercocebus atys
GCF_000955945.1_Caty_1.09531 \ 039 green monkey primates catarrhini Chlorocebus sabaeus
GCA_000409795.2_Chlorocebus_sabeus_1.160711 \ 040 De Brazza's monkey primates catarrhini Cercopithecus neglectus 36227 \ 041 Yellow Baboon primates catarrhini Papio cynocephalus 9556 \ 042 Celebes crested macaque primates catarrhini Macaca nigra 54600 \ 043 proboscis monkey primates catarrhini Nasalis larvatus 43780 \ 044 Preuss's Monkey primates catarrhini Allochrocebus preussi 147649 \ 045 Putty-nosed Monkey primates catarrhini Cercopithecus nictitans 36228 \ 046 Javan Surili primates catarrhini Presbytis comata 78452 \ 047 Sykes' Monkey primates catarrhini Cercopithecus albogularis 36225 \ 048 LHoests Monkey primates catarrhini Allochrocebus lhoesti 100224 \ 049 Crowned Monkey primates catarrhini Cercopithecus pogonias 102108 \ 050 Southern Mitered Langur primates catarrhini Presbytis mitrata (Presbytis melalophos mitrata) 272115 \ 051 Grey-shanked Douc Langur primates catarrhini Pygathrix cinerea 693712 \ 052 Mona monkey primates catarrhini Cercopithecus mona 36226 \ 053 Spot-nosed Monkey primates catarrhini Cercopithecus petaurista 100487 \ 054 grivet primates catarrhini Chlorocebus aethiops 9534 \ 055 Lowes Monkey primates catarrhini Cercopithecus lowei 304410 \ 056 Northern Yellow-cheeked Crested Gibbon primates catarrhini Nomascus annamensis 1616038 \ 057 Red-cheeked Gibbon primates catarrhini Nomascus gabriellae 61852 \ 058 Japanese macaque primates catarrhini Macaca fuscata 9542 \ 059 Western Red Colobus primates catarrhini Piliocolobus badius 164648 \ 060 southern white-cheeked gibbon primates catarrhini Nomascus siki_a 9586 \ 061 Taiwan macaque primates catarrhini Macaca cyclopis 78449 \ 062 black-shanked douc langur primates catarrhini Pygathrix nigripes 310352 \ 063 King Colobus primates catarrhini Colobus polykomos 9572 \ 064 Black Crested Gibbon primates catarrhini Nomascus concolor 29089 \ 065 Udzungwa Red Colobus primates catarrhini Piliocolobus gordonorum 591933 \ 066 Gee's Golden Langur primates catarrhini Trachypithecus geei 164650 \ 067 Kloss's Gibbon primates catarrhini Hylobates klossii 9587 \ 068 Spectacled Leaf Monkey primates catarrhini Trachypithecus obscurus 54181 \ 069 Zanzibar Red Colobus primates catarrhini Piliocolobus kirkii 591937 \ 070 Indochinese Silvered Langur primates catarrhini Trachypithecus germaini 271260 \ 071 Hatinh Langur primates catarrhini Trachypithecus hatinhensis 867383 \ 072 Moustached Monkey primates catarrhini Cercopithecus cephus 9535 \ 073 Laotian Langur primates catarrhini Trachypithecus laotum 465718 \ 074 Francois's langur primates catarrhini Trachypithecus francoisi 54180 \ 075 Purple-faced Langur primates catarrhini Semnopithecus vetulus (Trachypithecus vetulus) 54137 \ 076 Capped Langur primates catarrhini Trachypithecus pileatus 164651 \ 077 Ugandan red Colobus primates catarrhini Piliocolobus tephrosceles
GCF_002776525.2_ASM277652v2591936 \ 078 Spangled Ebony Langur primates catarrhini Trachypithecus auratus 222416 \ 079 Red-tailed Monkey primates catarrhini Cercopithecus ascanius 36223 \ 080 Silvery Lutung primates catarrhini Trachypithecus cristatus 122765 \ 081 Nilgiri Langur primates catarrhini Semnopithecus johnii (Trachypithecus johnii) 66063 \ 082 Indochinese grey langur primates catarrhini Trachypithecus crepusculus (Trachypithecus phayrei crepuscula) 272121 \ 083 White-headed langur primates catarrhini Trachypithecus leucocephalus (Trachypithecus poliocephalus) 465719 \ 084 pygmy chimpanzee primates catarrhini Pan paniscus
GCA_000258655.2_panpan1.19597 \ 085 northern white-cheeked gibbon primates catarrhini Nomascus siki_b 9586 \ 086 Agile Gibbon primates catarrhini Hylobates agilis 9579 \ 087 Phayre's Leaf-monkey primates catarrhini Trachypithecus melamera n/a \ 088 Nepal Gray Langur primates catarrhini Semnopithecus schistaceus 2804203 \ 089 Abbott's Gray Gibbon primates catarrhini Hylobates abbotti (Hylobates muelleri abbotti) 716694 \ 090 Bornean Gibbon primates catarrhini Hylobates muelleri 9588 \ 091 Tufted Gray Langur primates catarrhini Semnopithecus priam 1208733 \ 092 Black-footed Gray Langur primates catarrhini Semnopithecus hypoleucos 1208734 \ 093 mantled guereza primates catarrhini Colobus guereza 33548 \ 094 Hanuman langur primates catarrhini Semnopithecus entellus 88029 \ 095 pileated gibbon primates catarrhini Hylobates pileatus 9589 \ 096 black snub-nosed monkey primates catarrhini Rhinopithecus bieti 61621 \ 097 Burmese snub-nosed monkey primates catarrhini Rhinopithecus strykeri 1194336 \ 098 Angolan colobus primates catarrhini Colobus angolensis
colAng154131 \ 099 Pileated Gibbon primates catarrhini Hylobates pileatus 9589 \ 100 black-shanked douc langur primates catarrhini Pygathrix nigripes 310352 \ 101 Milne-edwards' Macaque primates catarrhini Macaca thibetana 54602 \ 102 Phayre's Leaf-monkey primates catarrhini Trachypithecus phayrei 61618 \ 103 Assam macaque primates catarrhini Macaca assamensis 9551 \ 104 Eastern hoolock gibbon primates catarrhini Hoolock leuconedys 61851 \ 105 mandrill primates catarrhini Mandrillus sphinx 9561 \ 106 White-faced Saki primates platyrrhini Pithecia chrysocephala 2946515 \ 107 Monk Saki primates platyrrhini Pithecia hirsuta 2946516 \ 108 white-faced saki primates platyrrhini Pithecia pithecia 43777 \ 109 Mittermeier's Tapajós saki primates platyrrhini Pithecia mittermeieri 2946517 \ 110 Buffy Saki primates platyrrhini Pithecia albicans 2946514 \ 111 Pissinatti's saki primates platyrrhini Pithecia pissinattii (Pithecia pissinatti) 2946518 \ 112 Vanzolini's Bald-faced Saki primates platyrrhini Pithecia vanzolinii 2946519 \ 113 Bald-headed Uacari primates platyrrhini Cacajao calvus 30596 \ 114 Ayres Black Uakari primates platyrrhini Cacajao ayresi 535896 \ 115 Black-headed Uacari primates platyrrhini Cacajao melanocephalus 70825 \ 116 Black-headed Uacari primates platyrrhini Cacajao hosomi 535897 \ 117 Reddish-brown bearded saki primates platyrrhini Chiropotes sagulatus (Chiropotes chiropotes) 658221 \ 118 brown-backed bearded saki primates platyrrhini Chiropotes israelita 280163 \ 119 Collared Titi Monkey primates platyrrhini Cheracebus lugens 210166 \ 120 Brown Titi Monkey primates platyrrhini Plecturocebus brunneus 1812042 \ 121 Hoffmanns's titi monkey primates platyrrhini Plecturocebus hoffmannsi 78255 \ 122 Milton's Titi Monkey primates platyrrhini Plecturocebus miltoni 1812038 \ 123 Widow Monkey primates platyrrhini Cheracebus torquatus 30592 \ 124 Ashy Black Titi Monkey primates platyrrhini Plecturocebus cinerascens 1812037 \ 125 Prince Bernhard's Titi Monkey primates platyrrhini Plecturocebus bernhardi 1812036 \ 126 Yellow-handed Titi Monkey primates platyrrhini Cheracebus lucifer 2487712 \ 127 Coppery Titi Monkey primates platyrrhini Plecturocebus cupreus 202457 \ 128 Chestnut-bellied Titi primates platyrrhini Plecturocebus caligatus 867332 \ 129 Hershkovitzs Titi primates platyrrhini Plecturocebus dubius 2946520 \ 130 Red-bellied Titi Monkey primates platyrrhini Plecturocebus moloch 9523 \ 131 Groves' Titi primates platyrrhini Plecturocebus grovesi 2488670 \ 132 black-handed spider monkey primates platyrrhini Ateles geoffroyi_a 9509 \ 133 Widow Monkey primates platyrrhini Cheracebus regulus 1812110 \ 134 Guiana Spider Monkey primates platyrrhini Ateles paniscus 9510 \ 135 Black-faced Black Spider Monkey primates platyrrhini Ateles chamek 118643 \ 136 White-cheeked Spider Monkey primates platyrrhini Ateles marginatus 1529884 \ 137 White-bellied Spider Monkey primates platyrrhini Ateles belzebuth 9507 \ 138 Common Woolly Monkey primates platyrrhini Lagothrix lagothricha (Lagothrix lagotricha) 9519 \ 139 large-headed capuchin primates platyrrhini Sapajus macrocephalus (Sapajus apella macrocephalus) 1547595 \ 140 Spixs White-fronted Capuchin primates platyrrhini Cebus unicolor 1985288 \ 141 Central American spider monkey primates platyrrhini Ateles geoffroyi_b 9509 \ 142 Guinan Weeper Capuchin primates platyrrhini Cebus olivaceus 37295 \ 143 mantled howler monkey primates platyrrhini Alouatta palliata 30589 \ 144 white-fronted capuchin primates platyrrhini Cebus albifrons 9514 \ 145 Northern Night Monkey primates platyrrhini Aotus trivirgatus 9505 \ 146 Grey-handed Night Monkey primates platyrrhini Aotus griseimembra 292213 \ 147 Black-and-gold Howler Monkey primates platyrrhini Alouatta caraya 9502 \ 148 Spixs Night Monkey primates platyrrhini Aotus vociferans 57176 \ 149 Red-handed Howler Monkey primates platyrrhini Alouatta belzebul 30590 \ 150 Red-handed Howler Monkey primates platyrrhini Alouatta discolor 2905217 \ 151 Azara's Night Monkey primates platyrrhini Aotus azarae (Aotus azarai) 30591 \ 152 Purús Red Howler Monkey primates platyrrhini Alouatta puruensis (Alouatta seniculus puruensis) 1347729 \ 153 Black Howler Monkey primates platyrrhini Alouatta nigerrima (Alouatta belzebul) 30590 \ 154 Guianan Red Howler Monkey primates platyrrhini Alouatta macconnelli 198115 \ 155 Colombian Red Howler Monkey primates platyrrhini Alouatta juara 2946512 \ 156 Colombian Red Howler Monkey primates platyrrhini Alouatta seniculus 9503 \ 157 tufted capuchin primates platyrrhini Sapajus apella 9515 \ 158 Ma's night monkey primates platyrrhini Aotus nancymaae
GCA_000952055.2_Anan_2.037293 \ 159 Bolivian squirrel monkey primates platyrrhini Saimiri boliviensis
GCF_016699345.1_BCM_Sbol_2.027679 \ 160 White-nosed Saki primates platyrrhini Chiropotes albinasus 198627 \ 161 Black Mantle Tamarin primates platyrrhini Leontocebus nigricollis 9489 \ 162 brown-mantled tamarin primates platyrrhini Leontocebus fuscicollis 9487 \ 163 Illiger's saddle-back tamarin primates platyrrhini Leontocebus illigeri (Leontocebus fuscicollis illigeri) 881947 \ 164 Cotton-headed Tamarin primates platyrrhini Saguinus oedipus 9490 \ 165 Pied Tamarin primates platyrrhini Saguinus bicolor 37588 \ 166 Geoffroy's Tamarin primates platyrrhini Saguinus geoffroyi 43778 \ 167 White-fronted Titi Monkey primates platyrrhini Saguinus inustus 1079039 \ 168 Moustached Tamarin primates platyrrhini Saguinus mystax 9488 \ 169 tamarin primates platyrrhini Saguinus imperator 9491 \ 170 Guianan Squirrel Monkey primates platyrrhini Saimiri sciureus 9521 \ 171 Red-chested Mustached Tamarin primates platyrrhini Saguinus labiatus 78454 \ 172 Goeldi's Monkey primates platyrrhini Callimico goeldii 9495 \ 173 Black-crowned Central American Squirrel Monkey primates platyrrhini Saimiri oerstedii 70928 \ 174 Golden-headed Lion Tamarin primates platyrrhini Leontopithecus chrysomelas 57374 \ 175 golden lion tamarin primates platyrrhini Leontopithecus rosalia 30588 \ 176 Humboldt's Squirrel Monkey primates platyrrhini Saimiri cassiquiarensis 2946521 \ 177 bare-eared squirrel monkey primates platyrrhini Saimiri ustus 66265 \ 178 Ecuadorian squirrel monkey primates platyrrhini Saimiri macrodon 2946522 \ 179 white-tufted-ear marmoset primates platyrrhini Callithrix jacchus 9483 \ 180 Eastern Pygmy Marmoset primates platyrrhini Cebuella niveiventris 2826950 \ 181 Western Pygmy Marmoset primates platyrrhini Cebuella pygmaea 9493 \ 182 Black And White Tassel-ear Marmoset primates platyrrhini Mico humeralifer 52232 \ 183 Black-crowned Dwarf Marmoset primates platyrrhini Callibella humilis (Mico humilis) 666519 \ 184 Mico schneideri primates platyrrhini Mico schneideri n/a \ 185 Silvery Marmoset primates platyrrhini Mico argentatus 9482 \ 186 Midas tamarin primates platyrrhini Saguinus midas 30586 \ 187 Wieds Marmoset primates platyrrhini Callithrix kuhlii 867363 \ 188 Geoffroy's Tufted-ear Marmoset primates platyrrhini Callithrix geoffroyi 52231 \ 189 Horsfield's tarsier primates tarsiidae Cephalopachus bancanus 9477 \ 190 Philippine tarsier primates tarsiidae Carlito syrichta
tarSyr21868482 \ 191 Lariang Tarsier primates tarsiidae Tarsius lariang 630277 \ 192 Wallace's Tarsier primates tarsiidae Tarsius wallacei 981131 \ 193 aye-aye primates strepsirrhini Daubentonia madagascariensis 31869 \ 194 Crowned Sifaka primates strepsirrhini Propithecus coronatus (Propithecus deckenii coronatus) 475619 \ 195 Perrier's Sifaka primates strepsirrhini Propithecus perrieri 989338 \ 196 ruffed lemur primates strepsirrhini Varecia variegata 9455 \ 197 Diademed Sifaka primates strepsirrhini Propithecus diadema 83281 \ 198 Milne-Edwards Sifaka primates strepsirrhini Propithecus edwardsi 543559 \ 199 babakoto primates strepsirrhini Indri indri 34827 \ 200 Golden-crowned Sifaka primates strepsirrhini Propithecus tattersalli 30601 \ 201 Eastern Woolly Lemur primates strepsirrhini Avahi laniger 122246 \ 202 Verreauxs Sifaka primates strepsirrhini Propithecus verreauxi 34825 \ 203 Peyrieras Woolly Lemur primates strepsirrhini Avahi peyrierasi 1313323 \ 204 Red Ruffed Lemur primates strepsirrhini Varecia rubra 554167 \ 205 greater bamboo lemur primates strepsirrhini Prolemur simus 1328070 \ 206 Red-bellied Lemur primates strepsirrhini Eulemur rubriventer 34829 \ 207 mongoose lemur primates strepsirrhini Eulemur mongoz 34828 \ 208 Geoffroys Dwarf Lemur primates strepsirrhini Cheirogaleus major 47177 \ 209 Crowned Lemur primates strepsirrhini Eulemur coronatus 13514 \ 210 black lemur primates strepsirrhini Eulemur macaco 30602 \ 211 lesser dwarf lemur primates strepsirrhini Cheirogaleus medius 9460 \ 212 Sclater's lemur primates strepsirrhini Eulemur flavifrons 87288 \ 213 Coquerel's sifaka primates strepsirrhini Propithecus coquerelli (Propithecus coquereli)
proCoq1379532 \ 214 Collared Brown Lemur primates strepsirrhini Eulemur collaris (Eulemur fulvus collaris) 47178 \ 215 Red-tailed Sportive Lemur primates strepsirrhini Lepilemur ruficaudatus 78866 \ 216 Red Brown Lemur primates strepsirrhini Eulemur rufus 859983 \ 217 Sanfords Brown Lemur primates strepsirrhini Eulemur sanfordi 122225 \ 218 White-fronted Lemur primates strepsirrhini Eulemur albifrons 1215604 \ 219 Gray's Sportive Lemur primates strepsirrhini Lepilemur dorsalis 78583 \ 220 brown lemur primates strepsirrhini Eulemur fulvus 13515 \ 221 Sahafary Sportive Lemur primates strepsirrhini Lepilemur septentrionalis 78584 \ 222 Sambirano Lesser Bamboo Lemur primates strepsirrhini Hapalemur occidentalis 867377 \ 223 Alaotra Reed Lemur primates strepsirrhini Hapalemur alaotrensis (Hapalemur griseus alaotrensis) 122220 \ 224 Eastern Lesser Bamboo Lemur primates strepsirrhini Hapalemur griseus 13557 \ 225 Ankarana Sportive Lemur primates strepsirrhini Lepilemur ankaranensis 342401 \ 226 ring-tailed lemur primates strepsirrhini Lemur catta 9447 \ 227 gray bamboo lemur primates strepsirrhini Hapalemur gilberti 3043110 \ 228 Rusty-gray Lesser Bamboo Lemur primates strepsirrhini Hapalemur meridionalis 3043112 \ 229 Demidoffs Dwarf Galago primates strepsirrhini Galagoides demidoff 89672 \ 230 northern giant mouse lemur primates strepsirrhini Mirza zaza 339999 \ 231 gray mouse lemur primates strepsirrhini Microcebus murinus
GCA_000165445.3_Mmur_3.030608 \ 232 small-eared galago primates strepsirrhini Otolemur garnettii
otoGar330611 \ 233 Northern Lesser Galago primates strepsirrhini Galago senegalensis 9465 \ 234 Thick-tailed Greater Galago primates strepsirrhini Otolemur crassicaudatus 9463 \ 235 Grey Slender Loris primates strepsirrhini Loris lydekkerianus 300163 \ 236 slender loris primates strepsirrhini Loris tardigradus 9468 \ 237 West African Potto primates strepsirrhini Perodicticus potto 9472 \ 238 East African Potto primates strepsirrhini Perodicticus ibeanus (Perodicticus potto ibeanus) 261737 \ 239 Moholi bushbaby primates strepsirrhini Galago moholi 30609 \ 240 Pygmy Slow Loris primates strepsirrhini Nycticebus pygmaeus (Xanthonycticebus pygmaeus) 101278 \ 241 Bengal slow loris primates strepsirrhini Nycticebus bengalensis 261741 \ 242 Calabar Angwantibo primates strepsirrhini Arctocebus calabarensis 261739 \ 243 slow loris primates strepsirrhini Nycticebus coucang 9470 \ 244 jaguar carnivora Panthera onca
GCA_004023805.1_PanOnc_v1_BIUU9690 \ 245 leopard carnivora Panthera pardus
GCA_001857705.1_PanPar1.09691 \ 246 giant panda carnivora Ailuropoda melanoleuca
GCA_002007445.1_ASM200744v19646 \ 247 Hawaiian monk seal carnivora Neomonachus schauinslandi
GCA_002201575.1_ASM220157v129088 \ 248 California sea lion carnivora Zalophus californianus
GCA_004024565.1_ZalCal_v1_BIUU9704 \ 249 Greenland wolf carnivora Canis lupus orion
GCA_905319855.2_mCanLor1.22605939 \ 250 Pacific walrus carnivora Odobenus rosmarus
odoRosDiv19707 \ 251 domestic cat (Fca126) carnivora Felis catus fca126 (Felis catus)
GCF_018350175.1_F.catus_Fca126_mat1.09685 \ 252 northern elephant seal carnivora Mirounga angustirostris
GCA_004023865.1_MirAng_v1_BIUU9716 \ 253 domestic cat carnivora Felis catus
felCat89685 \ 254 domestic dog (BS72/Village Dog) carnivora Canis lupus familiaris
GCA_004027395.1_CanFam_VD_v1_BIUU\ 255 German Shepherd dog (Mischka) carnivora Canis lupus familiaris (CanFam4) (Canis lupus familiaris)
canFam4\ 256 dingo carnivora Canis lupus dingo 286419 \ 257 raccoon dog carnivora Nyctereutes procyonoides 34880 \ 258 fossa carnivora Cryptoprocta ferox 94188 \ 259 polar bear carnivora Ursus maritimus
GCA_000687225.1_UrsMar_1.029073 \ 260 Asian palm civet carnivora Paradoxurus hermaphroditus
GCA_004024585.1_ParHer_v1_BIUU71117 \ 261 African hunting dog carnivora Lycaon pictus
GCA_001887905.1_LycPicSAfr1.09622 \ 262 Arctic fox carnivora Vulpes lagopus
GCA_004023825.1_VulLag_v1_BIUU494514 \ 263 dog carnivora Canis lupus familiaris
GCF_000002285.3_CanFam3.19615 \ 264 striped hyena carnivora Hyaena hyaena
GCA_004023945.1_HyaHya_v1_BIUU95912 \ 265 n/a carnivora Acinonyx jubatus
GCA_001443585.1_aciJub132536 \ 266 tiger carnivora Panthera tigris
GCA_000464555.1_PanTig1.09694 \ 267 Sea otter carnivora Enhydra lutris
GCA_002288905.2_ASM228890v234882 \ 268 giant otter carnivora Pteronura brasiliensis 9672 \ 269 bat-eared fox carnivora Otocyon megalotis 9624 \ 270 Weddell seal carnivora Leptonychotes weddellii
GCA_000349705.1_LepWed1.09713 \ 271 Lesser panda carnivora Ailurus fulgens
GCA_002007465.1_ASM200746v19649 \ 272 ratel carnivora Mellivora capensis
GCA_004024625.1_MelCap_v1_BIUU9664 \ 273 banded mongoose carnivora Mungos mungo
GCA_004023785.1_MunMun_v1_BIUU210652 \ 274 dwarf mongoose carnivora Helogale parvula
GCA_004023845.1_HelPar_v1_BIUU210647 \ 275 meerkat carnivora Suricata suricatta
GCA_004023905.1_SurSur_v1_BIUU37032 \ 276 puma carnivora Puma concolor
GCA_003327715.1_PumCon1.09696 \ 277 black-footed cat carnivora Felis nigripes
GCA_004023925.1_FelNig_v1_BIUU61379 \ 278 European polecat carnivora Mustela putorius
GCA_000239315.1_MusPutFurMale1.09668 \ 279 western spotted skunk carnivora Spilogale gracilis
GCA_004023965.1_SpiGra_v1_BIUU30551 \ 280 Sumatran rhinoceros laurasiatheria Dicerorhinus sumatrensis
GCA_002844835.1_ASM284483v189632 \ 281 black rhinoceros laurasiatheria Diceros bicornis
GCA_004027315.1_DicBicMic_v1_BIUU9805 \ 282 Asiatic tapir laurasiatheria Tapirus indicus
GCA_004024905.1_TapInd_v1_BIUU9802 \ 283 Brazilian tapir laurasiatheria Tapirus terrestris
GCA_004025025.1_TapTer_v1_BIUU9801 \ 284 northern white rhinoceros laurasiatheria Ceratotherium simum cottoni 310713 \ 285 ass laurasiatheria Equus asinus
GCA_001305755.1_ASM130575v19793 \ 286 Southern white rhinoceros laurasiatheria Ceratotherium simum
GCA_000283155.1_CerSimSim1.09807 \ 287 Przewalski's horse laurasiatheria Equus przewalskii
GCA_000696695.1_Burgud9798 \ 288 horse laurasiatheria Equus caballus
GCA_000002305.1_EquCab2.09796 \ 289 Malayan pangolin laurasiatheria Manis javanica
GCA_001685135.1_ManJav1.09974 \ 290 Chinese pangolin laurasiatheria Manis pentadactyla
GCA_000738955.1_M_pentadactyla-1.1.1143292 \ 291 Hispaniolan solenodon laurasiatheria Solenodon paradoxus 79805 \ 292 eastern mole laurasiatheria Scalopus aquaticus
GCA_004024925.1_ScaAqu_v1_BIUU71119 \ 293 gracile shrew mole laurasiatheria Uropsilus gracilis
GCA_004024945.1_UroGra_v1_BIUU182669 \ 294 star-nosed mole laurasiatheria Condylura cristata
GCF_000260355.1_ConCri1.0143302 \ 295 western European hedgehog laurasiatheria Erinaceus europaeus
GCA_000296755.1_EriEur2.09365 \ 296 European shrew laurasiatheria Sorex araneus
sorAra242254 \ 297 Indochinese shrew laurasiatheria Crocidura indochinensis
GCA_004027635.1_CroInd_v1_BIUU876679 \ 298 Hoffmann's two-fingered sloth xenarthra Choloepus hoffmanni
GCA_000164785.2_C_hoffmanni-2.0.19358 \ 299 nine-banded armadillo xenarthra Dasypus novemcinctus
GCA_000208655.2_Dasnov3.09361 \ 300 giant anteater xenarthra Myrmecophaga tridactyla
GCA_004026745.1_MyrTri_v1_BIUU71006 \ 301 southern tamandua xenarthra Tamandua tetradactyla
GCA_004025105.1_TamTet_v1_BIUU48850 \ 302 placentals xenarthra Tolypeutes matacus 183749 \ 303 southern two-toed sloth xenarthra Choloepus didactylus
GCA_004027855.1_ChoDid_v1_BIUU27675 \ 304 screaming hairy armadillo xenarthra Chaetophractus vellerosus
GCA_004027955.1_ChaVel_v1_BIUU340076 \ 305 North Pacific right whale artiodactyla Eubalaena japonica 302098 \ 306 grey whale artiodactyla Eschrichtius robustus 9764 \ 307 hippopotamus artiodactyla Hippopotamus amphibius
GCA_004027065.1_HipAmp_v1_BIUU9833 \ 308 Minke whale artiodactyla Balaenoptera acutorostrata
GCA_000493695.1_BalAcu1.09767 \ 309 beluga whale artiodactyla Delphinapterus leucas
GCA_002288925.2_ASM228892v29749 \ 310 Antarctic minke whale artiodactyla Balaenoptera bonaerensis
GCA_000978805.1_ASM97880v133556 \ 311 boutu artiodactyla Inia geoffrensis 9725 \ 312 harbor porpoise artiodactyla Phocoena phocoena 9742 \ 313 narwhal artiodactyla Monodon monoceros
GCA_004026685.1_MonMon_M_v1_BIUU40151 \ 314 Yangtze River dolphin artiodactyla Lipotes vexillifer
GCA_000442215.1_Lipotes_vexillifer_v1118797 \ 315 killer whale artiodactyla Orcinus orca
orcOrc19733 \ 316 Ganges River dolphin artiodactyla Platanista gangetica 118798 \ 317 Yangtze finless porpoise artiodactyla Neophocaena asiaeorientalis
GCA_003031525.1_Neophocaena_asiaeorientalis_V1189058 \ 318 Sowerby's beaked whale artiodactyla Mesoplodon bidens 48745 \ 319 alpaca artiodactyla Vicugna pacos
GCA_000767525.1_Vi_pacos_V1.030538 \ 320 Cuvier's beaked whale" artiodactyla Ziphius cavirostris 9760 \ 321 Bactrian camel artiodactyla Camelus bactrianus
GCA_000767855.1_Ca_bactrianus_MBC_1.09837 \ 322 Arabian camel artiodactyla Camelus dromedarius
GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.09838 \ 323 wild Bactrian camel artiodactyla Camelus ferus
GCA_000311805.2_CB1419612 \ 324 pygmy sperm whale artiodactyla Kogia breviceps 27615 \ 325 Chacoan peccary artiodactyla Catagonus wagneri
GCA_004024745.1_CatWag_v1_BIUU51154 \ 326 reindeer artiodactyla Rangifer tarandus
GCA_004026565.1_RanTarSib_v1_BIUU9870 \ 327 Pere David's deer artiodactyla Elaphurus davidianus
GCA_002443075.1_Milu1.043332 \ 328 okapi artiodactyla Okapia johnstoni
GCA_001660835.1_ASM166083v186973 \ 329 Masai giraffe artiodactyla Giraffa tippelskirchi
GCA_001651235.1_ASM165123v1439328 \ 330 Siberian musk deer artiodactyla Moschus moschiferus
GCA_004024705.1_MosMos_v1_BIUU68415 \ 331 water buffalo artiodactyla Bubalus bubalis
GCA_000471725.1_UMD_CASPUR_WB_2.089462 \ 332 cow artiodactyla Bos taurus
GCA_000003205.6_Btau_5.0.19913 \ 333 pronghorn artiodactyla Antilocapra americana
GCA_004027515.1_AntAmePen_v1_BIUU9891 \ 334 white-tailed deer artiodactyla Odocoileus virginianus
GCA_002102435.1_Ovir.te_1.09874 \ 335 aoudad artiodactyla Ammotragus lervia
GCA_002201775.1_ALER1.09899 \ 336 bighorn sheep artiodactyla Ovis canadensis
GCA_004026945.1_OviCan_v1_BIUU37174 \ 337 goat artiodactyla Capra hircus
GCA_001704415.1_ARS19925 \ 338 Nilgiri tahr artiodactyla Hemitragus hylocrius
GCA_004026825.1_HemHyl_v1_BIUU330464 \ 339 hirola artiodactyla Beatragus hunteri
GCA_004027495.1_BeaHun_v1_BIUU59527 \ 340 wild yak artiodactyla Bos mutus
bosMut172004 \ 341 American bison artiodactyla Bison bison
GCA_000754665.1_Bison_UMD1.09901 \ 342 sheep artiodactyla Ovis aries
GCA_000298735.2_Oar_v4.09940 \ 343 chiru artiodactyla Pantholops hodgsonii
GCA_000400835.1_PHO1.059538 \ 344 wild goat artiodactyla Capra aegagrus
GCA_000978405.1_CapAeg_1.09923 \ 345 Java mouse-deer artiodactyla Tragulus javanicus
GCA_004024965.1_TraJav_v1_BIUU9849 \ 346 pig artiodactyla Sus scrofa
susScr39823 \ 347 zebu cattle artiodactyla Bos indicus
GCA_000247795.2_Bos_indicus_1.09915 \ 348 common bottlenose dolphin artiodactyla Tursiops truncatus
GCA_001922835.1_NIST_Tur_tru_v19739 \ 349 Saiga antelope artiodactyla Saiga tatarica
GCA_004024985.1_SaiTat_v1_BIUU34875 \ 350 Chinese rufous horseshoe bat chiroptera Rhinolophus sinicus
GCA_001888835.1_ASM188883v189399 \ 351 black flying fox chiroptera Pteropus alecto
pteAle19402 \ 352 Cantor's roundleaf bat chiroptera Hipposideros galeritus 58069 \ 353 Egyptian rousette chiroptera Rousettus aegyptiacus
GCA_004024865.1_RouAeg_v1_BIUU9407 \ 354 long-tongued fruit bat chiroptera Macroglossus sobrinus 326083 \ 355 large flying fox chiroptera Pteropus vampyrus
GCF_000151845.1_Pvam_2.0132908 \ 356 Brazilian free-tailed bat chiroptera Tadarida brasiliensis
GCA_004025005.1_TadBra_v1_BIUU9438 \ 357 great roundleaf bat chiroptera Hipposideros armiger
GCA_001890085.1_ASM189008v1186990 \ 358 straw-colored fruit bat chiroptera Eidolon helvum
eidHel177214 \ 359 Antillean ghost-faced bat chiroptera Mormoops blainvillei
GCA_004026545.1_MorMeg_v1_BIUU118852 \ 360 tailed tailless bat chiroptera Anoura caudifer
GCA_004027475.1_AnoCau_v1_BIUU27642 \ 361 common vampire bat chiroptera Desmodus rotundus
GCA_002940915.2_ASM294091v29430 \ 362 hairy big-eared bat chiroptera Micronycteris hirsuta
GCA_004026765.1_MicHir_v1_BIUU148065 \ 363 stripe-headed round-eared bat chiroptera Tonatia saurophila
GCA_004024845.1_TonSau_v1_BIUU171122 \ 364 Seba's short-tailed bat chiroptera Carollia perspicillata
GCA_004027735.1_CarPer_v1_BIUU40233 \ 365 Jamaican fruit-eating bat chiroptera Artibeus jamaicensis
GCA_004027435.1_ArtJam_v1_BIUU9417 \ 366 Indian false vampire chiroptera Megaderma lyra
GCA_004026885.1_MegLyr_v1_BIUU9413 \ 367 Schreibers' long-fingered bat chiroptera Miniopterus schreibersii
GCA_004026525.1_MinSch_v1_BIUU9433 \ 368 greater bulldog bat chiroptera Noctilio leporinus
GCA_004026585.1_NocLep_v1_BIUU94963 \ 369 Natal long-fingered bat chiroptera Miniopterus natalensis
GCF_001595765.1_Mnat.v1291302 \ 370 hog-nosed bat chiroptera Craseonycteris thonglongyai
GCA_004027555.1_CraTho_v1_BIUU208972 \ 371 Parnell's mustached bat chiroptera Pteronotus parnellii
ptePar159476 \ 372 greater mouse-eared bat chiroptera Myotis myotis
GCA_004026985.1_MyoMyo_v1_BIUU51298 \ 373 Ashy-gray tube-nosed bat chiroptera Murina feae (Murina aurata feae)
GCA_004026665.1_MurFea_v1_BIUU1453894 \ 374 David's myotis chiroptera Myotis davidii
myoDav1225400 \ 375 Brandt's bat chiroptera Myotis brandtii
myoBra1109478 \ 376 big brown bat chiroptera Eptesicus fuscus
GCF_000308155.1_EptFus1.029078 \ 377 red bat chiroptera Lasiurus borealis
GCA_004026805.1_LasBor_v1_BIUU258930 \ 378 little brown bat chiroptera Myotis lucifugus
myoLuc259463 \ 379 common pipistrelle chiroptera Pipistrellus pipistrellus
GCA_004026625.1_PipPip_v1_BIUU59474 \ 380 African savanna elephant afrotheria Loxodonta africana
GCA_000001905.1_Loxafr3.09785 \ 381 Florida manatee afrotheria Trichechus manatus
GCA_000243295.1_TriManLat1.09778 \ 382 yellow-spotted hyrax afrotheria Heterohyrax brucei
GCA_004026845.1_HetBruBak_v1_BIUU77598 \ 383 Cape rock hyrax afrotheria Procavia capensis
GCA_004026925.1_ProCapCap_v1_BIUU9813 \ 384 aardvark afrotheria Orycteropus afer 9818 \ 385 Cape golden mole afrotheria Chrysochloris asiatica
GCA_004027935.1_ChrAsi_v1_BIUU185453 \ 386 Cape elephant shrew afrotheria Elephantulus edwardii
eleEdw128737 \ 387 Talazac's shrew tenrec afrotheria Microgale talazaci (Nesogale talazaci)
GCA_004026705.1_MicTal_v1_BIUU2583312 \ 388 small Madagascar hedgehog afrotheria Echinops telfairi
GCA_000313985.1_EchTel2.09371 \ 389 Sunda flying lemur euarchontoglires Galeopterus variegatus
GCA_004027255.1_GalVar_v1_BIUU482537 \ 390 Chinese tree shrew euarchontoglires Tupaia chinensis
tupChi1246437 \ 391 South African ground squirrel euarchontoglires Xerus inauris
GCA_004024805.1_XerIna_v1_BIUU234690 \ 392 large tree shrew euarchontoglires Tupaia tana 70687 \ 393 mountain beaver euarchontoglires Aplodontia rufa
GCA_004027875.1_AplRuf_v1_BIUU51342 \ 394 Alpine marmot euarchontoglires Marmota marmota
GCF_001458135.1_marMar2.19993 \ 395 Daurian ground squirrel euarchontoglires Spermophilus dauricus
GCA_002406435.1_ASM240643v199837 \ 396 crested porcupine euarchontoglires Hystrix cristata
GCA_004026905.1_HysCri_v1_BIUU10137 \ 397 thirteen-lined ground squirrel euarchontoglires Ictidomys tridecemlineatus
speTri243179 \ 398 American beaver euarchontoglires Castor canadensis
GCA_004027675.1_CasCan_v1_BIUU51338 \ 399 long-tailed chinchilla euarchontoglires Chinchilla lanigera
chiLan134839 \ 400 punctate agouti euarchontoglires Dasyprocta punctata 34846 \ 401 pacarana euarchontoglires Dinomys branickii
GCA_004027595.1_DinBra_v1_BIUU108858 \ 402 fat dormouse euarchontoglires Glis glis
GCA_004027185.1_GliGli_v1_BIUU41261 \ 403 northern gundi euarchontoglires Ctenodactylus gundi
GCA_004027205.1_CteGun_v1_BIUU10166 \ 404 naked mole-rat euarchontoglires Heterocephalus glaber
GCA_000247695.1_HetGla_female_1.010181 \ 405 Patagonian cavy euarchontoglires Dolichotis patagonum
GCA_004027295.1_DolPat_v1_BIUU29091 \ 406 capybara euarchontoglires Hydrochoerus hydrochaeris
GCA_004027455.1_HydHyd_v1_BIUU10149 \ 407 Montane guinea pig euarchontoglires Cavia tschudii
GCA_004027695.1_CavTsc_v1_BIUU143287 \ 408 domestic guinea pig euarchontoglires Cavia porcellus
GCA_000151735.1_Cavpor3.010141 \ 409 degu euarchontoglires Octodon degus
GCA_000260255.1_OctDeg1.010160 \ 410 lowland paca euarchontoglires Cuniculus paca 108852 \ 411 social tuco-tuco euarchontoglires Ctenomys sociabilis
GCA_004027165.1_CteSoc_v1_BIUU43321 \ 412 Damara mole-rat euarchontoglires Fukomys damarensis
fukDam1885580 \ 413 woodland dormouse euarchontoglires Graphiurus murinus 51346 \ 414 Desmarest's hutia euarchontoglires Capromys pilorides
GCA_004027915.1_CapPil_v1_BIUU34842 \ 415 Upper Galilee mountains blind mole rat euarchontoglires Nannospalax galili
GCA_000622305.1_S.galili_v1.01026970 \ 416 nutria euarchontoglires Myocastor coypus
GCA_004027025.1_MyoCoy_v1_BIUU10157 \ 417 hazel dormouse euarchontoglires Muscardinus avellanarius
GCA_004027005.1_MusAve_v1_BIUU39082 \ 418 dassie-rat euarchontoglires Petromus typicus
GCA_004026965.1_PetTyp_v1_BIUU10183 \ 419 greater cane rat euarchontoglires Thryonomys swinderianus
GCA_004025085.1_ThrSwi_v1_BIUU10169 \ 420 snowshoe hare euarchontoglires Lepus americanus
GCA_004026855.1_LepAme_v1_BIUU48086 \ 421 Gambian giant pouched rat euarchontoglires Cricetomys gambianus
GCA_004027575.1_CriGam_v1_BIUU10085 \ 422 Prairie deer mouse euarchontoglires Peromyscus maniculatus
GCF_000500345.1_Pman_1.010042 \ 423 southern grasshopper mouse euarchontoglires Onychomys torridus
GCA_004026725.1_OnyTor_v1_BIUU38674 \ 424 rabbit euarchontoglires Oryctolagus cuniculus
GCA_000003625.1_OryCun2.09986 \ 425 muskrat euarchontoglires Ondatra zibethicus
GCA_004026605.1_OndZib_v1_BIUU10060 \ 426 northern mole vole euarchontoglires Ellobius talpinus
GCA_001685095.1_ETalpinus_0.1329620 \ 427 Mongolian gerbil euarchontoglires Meriones unguiculatus
GCA_004026785.1_MerUng_v1_BIUU10047 \ 428 fat sand rat euarchontoglires Psammomys obesus
GCA_002215935.1_ASM221593v148139 \ 429 house mouse euarchontoglires Mus musculus
mm1010090 \ 430 Chinese hamster euarchontoglires Cricetulus griseus
GCA_900186095.1_CHOK1S_HZDv110029 \ 431 Norway rat euarchontoglires Rattus norvegicus
GCF_000001895.5_Rnor_6.010116 \ 432 western wild mouse euarchontoglires Mus spretus
GCA_001624865.1_SPRET_EiJ_v110096 \ 433 meadow jumping mouse euarchontoglires Zapus hudsonius
GCA_004024765.1_ZapHud_v1_BIUU160400 \ 434 prairie vole euarchontoglires Microtus ochrogaster
micOch179684 \ 435 Ryukyu mouse euarchontoglires Mus caroli
GCA_900094665.2_CAROLI_EIJ_v1.110089 \ 436 Egyptian spiny mouse euarchontoglires Acomys cahirinus
GCA_004027535.1_AcoCah_v1_BIUU10068 \ 437 Gobi jerboa euarchontoglires Allactaga bullata (Orientallactaga bullata)
GCA_004027895.1_AllBul_v1_BIUU1041416 \ 438 shrew mouse euarchontoglires Mus pahari
GCF_900095145.1_PAHARI_EIJ_v1.110093 \ 439 Transcaucasian mole vole euarchontoglires Ellobius lutescens
GCA_001685075.1_ASM168507v139086 \ 440 hispid cotton rat euarchontoglires Sigmodon hispidus
GCA_004025045.1_SigHis_v1_BIUU42415 \ 441 lesser Egyptian jerboa euarchontoglires Jaculus jaculus
GCA_000280705.1_JacJac1.051337 \ 442 Brazilian guinea pig euarchontoglires Cavia aperea
cavApe137548 \ 443 golden hamster euarchontoglires Mesocricetus auratus
GCA_000349665.1_MesAur1.010036 \ 444 Stephens's kangaroo rat euarchontoglires Dipodomys stephensi
GCA_004024685.1_DipSte_v1_BIUU323379 \ 445 American pika euarchontoglires Ochotona princeps
GCA_000292845.1_OchPri3.09978 \ 446 Ord's kangaroo rat euarchontoglires Dipodomys ordii
dipOrd210020 \ 447 little pocket mouse euarchontoglires Perognathus longimembris 38669
\ Table 1. Genome assemblies included in the 447-way Conservation track.\
References
\\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363;\ PMC: PMC2798823\
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Kuderna LFK, Ulirsch JC, Rashid S, Ameen M, Sundaram L, Hickey G, Cox AJ, Gao H, Kumar A, Aguet F\
et al.\
\
Identification of constrained sequence elements across 239 primate genomes.\
Nature. 2023 Nov 29;.\
DOI: 10.1038/s41586-023-06798-8; PMID:
\ Kuderna LFK, Gao H, Janiak MC, Kuhlwilm M, Orkin JD, Bataillon T, Manu S, Valenzuela A, Bergman J,\ Rousselle M et al.\ \ A global catalog of whole-genome diversity from 233 primate species.\ Science. 2023 Jun 2;380(6648):906-913.\ DOI: 10.1126/science.abn7829;\ PMID: 37262161\
\\
Zoonomia Consortium.\
\
A comparative genomics multitool for scientific discovery and conservation.\
Nature. 2020 Nov;587(7833):240-245.\
DOI: 10.1038/s41586-020-2876-6; PMID:
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Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC et\
al.\
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Dense sampling of bird diversity increases power of comparative genomics.\
Nature. 2020 Nov;587(7833):252-257.\
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Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\
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Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout
Methods
\ \\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\
\ \Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ phenDis 1 color 100,130,160\ group phenDis\ html caddSuper.html\ longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions\ shortLabel CADD 1.6\ superTrack on hide\ track caddSuper\ type bed\ visibility hide\ cadd CADD 1.6 bigWig CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores) 1 100 100 130 160 177 192 207 0 0 0Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout
Methods
\ \\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\
\ \Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ phenDis 0 color 100,130,160\ compositeTrack on\ group phenDis\ html caddSuper\ longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)\ maxWindowToDraw 10000000\ mouseOverFunction noAverage\ parent caddSuper\ shortLabel CADD 1.6\ track cadd\ type bigWig\ visibility dense\ caddDel CADD 1.6 Del bigBed 9 + CADD 1.6 Score: Deletions - label is length of deletion 1 100 100 130 160 177 192 207 0 0 0Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout
Methods
\ \\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\
\ \Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ phenDis 1 bigDataUrl /gbdb/hg38/cadd/del.bb\ filter.score 10:100\ filterByRange.score on\ filterLabel.score Show only items with PHRED scale score of\ filterLimits.score 0:100\ html caddSuper\ longLabel CADD 1.6 Score: Deletions - label is length of deletion\ mouseOver Mutation: $change CADD Phred score: $phred\ parent caddSuper\ shortLabel CADD 1.6 Del\ track caddDel\ type bigBed 9 +\ visibility dense\ caddIns CADD 1.6 Ins bigBed 9 + CADD 1.6 Score: Insertions - label is length of insertion 1 100 100 130 160 177 192 207 0 0 0Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd/ins.bb stdout
Methods
\ \\ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts, \ documented in our \ makeDoc files.\
\ \Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ phenDis 1 bigDataUrl /gbdb/hg38/cadd/ins.bb\ filter.score 10:100\ filterByRange.score on\ filterLabel.score Show only items with PHRED scale score of\ filterLimits.score 0:100\ html caddSuper\ longLabel CADD 1.6 Score: Insertions - label is length of insertion\ mouseOver Mutation: $change CADD Phred score: $phred\ parent caddSuper\ shortLabel CADD 1.6 Ins\ track caddIns\ type bigBed 9 +\ visibility dense\ caddSuper1_7 CADD 1.7 bed CADD 1.7 Score for all single-basepair mutations and selected insertions/deletions 0 100 100 130 160 177 192 207 0 0 0Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Track colors
\\ This track is colored according to Table 2 in Vikas et al. The colors represent the recommended ACMG/AMP score cutoffs. \ \
| Range | \Classification | \
|---|---|
| ≥ 25.3 | \Pathogenic | \
| 25.2 - 22.6 | \Neutral | \
| ≤ 22.7 | \Benign | \
Methods
\ \\ In CADD version 1.7, new features have been added to improve CADD scores for certain variant\ effects, boosting the overall performance of CADD and bringing new developments to the community.\ CADD v1.7 integrates annotations from recent efforts to assess variant effects, along with new\ conservation and mutation scores.
\\ CADD v1.7 supports only the major chromosomes of the hg38/GRCh38 reference genome (chromosomes 1-22,\ X, and Y) and may be the last version to support the hg19/GRCh37 human reference genome.
\\ This version includes scores derived from Evolutionary Scale Modeling (ESM) for assessing variants\ in protein-coding regions, along with scores from a convolutional neural network (CNN) trained on\ open chromatin sequences, used as a proxy for regulatory regions in the genome. The previously\ included conservation scores have been updated with data from the Zoonomia project. New annotations\ have also been added for 3' Untranslated Regions (3' UTRs), along with models of genome-wide\ mutational rates. The gene and transcript models have been updated by advancing from Ensembl version\ 95 to version 110, and the Ensembl Variant Effect Predictor (VEP) has been upgraded accordingly.
\\ The models in CADD v1.7 have been trained similarly to the version 1.6 release. The logistic\ regression uses an L2 penalty with C = 1, and training was completed after thirteen L-BFGS\ iterations using the sklearn library The new models exhibit a high degree of similarity to the\ previous release, with a Spearman correlation of 0.946 for CADD scores calculated for 100,000\ randomly selected variants between CADD GRCh38-v1.6 and CADD GRCh38-v1.7. The v1.7 models perform\ comparably to earlier versions in distinguishing known pathogenic variants (ClinVar) from common\ variants (gnomAD) across the genome. Improvements in CADD v1.7 are particularly evident when\ focusing on specific variant categories, such as missense or 3' UTR variants, where the latest\ release includes updated annotations.
\\ More information can be found at the\ CADD site\ and the Schubach et al., Nucleic Acids Res, 2024 publication.\ \ \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts,\ documented in our \ makeDoc files.\
\ \ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/ins.bb stdout
Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ \\
Schubach M, Maass T, Nazaretyan L, Röner S, Kircher M.\
\
CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to\
improve genome-wide variant predictions.\
Nucleic Acids Res. 2024 Jan 5;52(D1):D1143-D1154.\
PMID: 38183205; PMC:
Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Track colors
\\ This track is colored according to Table 2 in Vikas et al. The colors represent the recommended ACMG/AMP score cutoffs. \ \
| Range | \Classification | \
|---|---|
| ≥ 25.3 | \Pathogenic | \
| 25.2 - 22.6 | \Neutral | \
| ≤ 22.7 | \Benign | \
Methods
\ \\ In CADD version 1.7, new features have been added to improve CADD scores for certain variant\ effects, boosting the overall performance of CADD and bringing new developments to the community.\ CADD v1.7 integrates annotations from recent efforts to assess variant effects, along with new\ conservation and mutation scores.
\\ CADD v1.7 supports only the major chromosomes of the hg38/GRCh38 reference genome (chromosomes 1-22,\ X, and Y) and may be the last version to support the hg19/GRCh37 human reference genome.
\\ This version includes scores derived from Evolutionary Scale Modeling (ESM) for assessing variants\ in protein-coding regions, along with scores from a convolutional neural network (CNN) trained on\ open chromatin sequences, used as a proxy for regulatory regions in the genome. The previously\ included conservation scores have been updated with data from the Zoonomia project. New annotations\ have also been added for 3' Untranslated Regions (3' UTRs), along with models of genome-wide\ mutational rates. The gene and transcript models have been updated by advancing from Ensembl version\ 95 to version 110, and the Ensembl Variant Effect Predictor (VEP) has been upgraded accordingly.
\\ The models in CADD v1.7 have been trained similarly to the version 1.6 release. The logistic\ regression uses an L2 penalty with C = 1, and training was completed after thirteen L-BFGS\ iterations using the sklearn library The new models exhibit a high degree of similarity to the\ previous release, with a Spearman correlation of 0.946 for CADD scores calculated for 100,000\ randomly selected variants between CADD GRCh38-v1.6 and CADD GRCh38-v1.7. The v1.7 models perform\ comparably to earlier versions in distinguishing known pathogenic variants (ClinVar) from common\ variants (gnomAD) across the genome. Improvements in CADD v1.7 are particularly evident when\ focusing on specific variant categories, such as missense or 3' UTR variants, where the latest\ release includes updated annotations.
\\ More information can be found at the\ CADD site\ and the Schubach et al., Nucleic Acids Res, 2024 publication.\ \ \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts,\ documented in our \ makeDoc files.\
\ \ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/ins.bb stdout
Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ \\
Schubach M, Maass T, Nazaretyan L, Röner S, Kircher M.\
\
CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to\
improve genome-wide variant predictions.\
Nucleic Acids Res. 2024 Jan 5;52(D1):D1143-D1154.\
PMID: 38183205; PMC:
Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Track colors
\\ This track is colored according to Table 2 in Vikas et al. The colors represent the recommended ACMG/AMP score cutoffs. \ \
| Range | \Classification | \
|---|---|
| ≥ 25.3 | \Pathogenic | \
| 25.2 - 22.6 | \Neutral | \
| ≤ 22.7 | \Benign | \
Methods
\ \\ In CADD version 1.7, new features have been added to improve CADD scores for certain variant\ effects, boosting the overall performance of CADD and bringing new developments to the community.\ CADD v1.7 integrates annotations from recent efforts to assess variant effects, along with new\ conservation and mutation scores.
\\ CADD v1.7 supports only the major chromosomes of the hg38/GRCh38 reference genome (chromosomes 1-22,\ X, and Y) and may be the last version to support the hg19/GRCh37 human reference genome.
\\ This version includes scores derived from Evolutionary Scale Modeling (ESM) for assessing variants\ in protein-coding regions, along with scores from a convolutional neural network (CNN) trained on\ open chromatin sequences, used as a proxy for regulatory regions in the genome. The previously\ included conservation scores have been updated with data from the Zoonomia project. New annotations\ have also been added for 3' Untranslated Regions (3' UTRs), along with models of genome-wide\ mutational rates. The gene and transcript models have been updated by advancing from Ensembl version\ 95 to version 110, and the Ensembl Variant Effect Predictor (VEP) has been upgraded accordingly.
\\ The models in CADD v1.7 have been trained similarly to the version 1.6 release. The logistic\ regression uses an L2 penalty with C = 1, and training was completed after thirteen L-BFGS\ iterations using the sklearn library The new models exhibit a high degree of similarity to the\ previous release, with a Spearman correlation of 0.946 for CADD scores calculated for 100,000\ randomly selected variants between CADD GRCh38-v1.6 and CADD GRCh38-v1.7. The v1.7 models perform\ comparably to earlier versions in distinguishing known pathogenic variants (ClinVar) from common\ variants (gnomAD) across the genome. Improvements in CADD v1.7 are particularly evident when\ focusing on specific variant categories, such as missense or 3' UTR variants, where the latest\ release includes updated annotations.
\\ More information can be found at the\ CADD site\ and the Schubach et al., Nucleic Acids Res, 2024 publication.\ \ \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts,\ documented in our \ makeDoc files.\
\ \ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/ins.bb stdout
Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ \\
Schubach M, Maass T, Nazaretyan L, Röner S, Kircher M.\
\
CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to\
improve genome-wide variant predictions.\
Nucleic Acids Res. 2024 Jan 5;52(D1):D1143-D1154.\
PMID: 38183205; PMC:
Description
\ \This track collection shows Combined Annotation Dependent Depletion scores.\ CADD is a tool for scoring the deleteriousness of single nucleotide variants as\ well as insertion/deletion variants in the human genome.
\ \\ Some mutation annotations\ tend to exploit a single information type (e.g., phastCons or phyloP for\ conservation) and/or are restricted in scope (e.g., to missense changes). Thus,\ a broadly applicable metric that objectively weights and integrates diverse\ information is needed. Combined Annotation Dependent Depletion (CADD) is a\ framework that integrates multiple annotations into one metric by contrasting\ variants that survived natural selection with simulated mutations.\
\ \\ CADD scores strongly correlate with allelic diversity, pathogenicity of both\ coding and non-coding variants, experimentally measured regulatory effects,\ and also rank causal variants within individual genome sequences with a higher\ value than non-causal variants. \ Finally, CADD scores of complex trait-associated variants from genome-wide\ association studies (GWAS) are significantly higher than matched controls and\ correlate with study sample size, likely reflecting the increased accuracy of\ larger GWAS.\
\ \\ A CADD score represents a ranking not a prediction, and no threshold is defined\ for a specific purpose. Higher scores are more likely to be deleterious: \ Scores are \ \
10 * -log of the rank\ \ so that variants with scores above 20 are \ predicted to be among the 1.0% most deleterious possible substitutions in \ the human genome. We recommend thinking carefully about what threshold is \ appropriate for your application.\ \ \
Display Conventions and Configuration
\\ There are six subtracks of this track: four for single-nucleotide mutations,\ one for each base, showing all possible substitutions, \ one for insertions and one for deletions. All subtracks show the CADD Phred\ score on mouseover. Zooming in shows the exact score on mouseover, same\ basepair = score 0.0.
\\ PHRED-scaled scores are normalized to all potential ~9 billion SNVs, and\ thereby provide an externally comparable unit for analysis. For example, a\ scaled score of 10 or greater indicates a raw score in the top 10% of all\ possible reference genome SNVs, and a score of 20 or greater indicates a raw\ score in the top 1%, regardless of the details of the annotation set, model\ parameters, etc.\
\\ The four single-nucleotide mutation tracks have a default viewing range of\ score 10 to 50. As explained in the paragraph above, that results in\ slightly less than 10% of the data displayed. The \ deletion and insertion tracks have a default filter of 10-100, because they\ display discrete items and not graphical data.\
\ \\ Single nucleotide variants (SNV): For SNVs, at every\ genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing \ the reference allele, e.g., A to A, is always set to zero.\
\\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and instead of an actual score, the tooltip text will show\ the average score of all nucleotides under the cursor. This is indicated by\ the prefix "~" in the mouseover. Averages of scores are not useful for any\ application of CADD.\
\ \Insertions and deletions: Scores are also shown on mouseover for a\ set of insertions and deletions. On hg38, the set has been obtained from\ gnomAD3. On hg19, the set of indels has been obtained from various sources\ (gnomAD2, ExAC, 1000 Genomes, ESP). If your insertion or deleletion of interest\ is not in the track, you will need to use CADD's\ online scoring tool\ to obtain them.
\ \Track colors
\\ This track is colored according to Table 2 in Vikas et al. The colors represent the recommended ACMG/AMP score cutoffs. \ \
| Range | \Classification | \
|---|---|
| ≥ 25.3 | \Pathogenic | \
| 25.2 - 22.6 | \Neutral | \
| ≤ 22.7 | \Benign | \
Methods
\ \\ In CADD version 1.7, new features have been added to improve CADD scores for certain variant\ effects, boosting the overall performance of CADD and bringing new developments to the community.\ CADD v1.7 integrates annotations from recent efforts to assess variant effects, along with new\ conservation and mutation scores.
\\ CADD v1.7 supports only the major chromosomes of the hg38/GRCh38 reference genome (chromosomes 1-22,\ X, and Y) and may be the last version to support the hg19/GRCh37 human reference genome.
\\ This version includes scores derived from Evolutionary Scale Modeling (ESM) for assessing variants\ in protein-coding regions, along with scores from a convolutional neural network (CNN) trained on\ open chromatin sequences, used as a proxy for regulatory regions in the genome. The previously\ included conservation scores have been updated with data from the Zoonomia project. New annotations\ have also been added for 3' Untranslated Regions (3' UTRs), along with models of genome-wide\ mutational rates. The gene and transcript models have been updated by advancing from Ensembl version\ 95 to version 110, and the Ensembl Variant Effect Predictor (VEP) has been upgraded accordingly.
\\ The models in CADD v1.7 have been trained similarly to the version 1.6 release. The logistic\ regression uses an L2 penalty with C = 1, and training was completed after thirteen L-BFGS\ iterations using the sklearn library The new models exhibit a high degree of similarity to the\ previous release, with a Spearman correlation of 0.946 for CADD scores calculated for 100,000\ randomly selected variants between CADD GRCh38-v1.6 and CADD GRCh38-v1.7. The v1.7 models perform\ comparably to earlier versions in distinguishing known pathogenic variants (ClinVar) from common\ variants (gnomAD) across the genome. Improvements in CADD v1.7 are particularly evident when\ focusing on specific variant categories, such as missense or 3' UTR variants, where the latest\ release includes updated annotations.
\\ More information can be found at the\ CADD site\ and the Schubach et al., Nucleic Acids Res, 2024 publication.\ \ \ Data were converted from the files provided on\ the CADD Downloads website,\ provided by the Kircher lab, using\ \ custom Python scripts,\ documented in our \ makeDoc files.\
\ \ \Data access
\\ CADD scores are freely available for all non-commercial applications from\ the CADD website.\ For commercial applications, see\ the license instructions there.\
\ \\
The CADD data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw, ins.bb and del.bb. Individual\
regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/a.bw stdout\
\
or\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/cadd1.7/ins.bb stdout
Credits
\\ Thanks to the CADD development team for providing precomputed data as simple tab-separated files.\
\ \References
\\ Kircher M, Witten DM, Jain P, O'Roak BJ, Cooper GM, Shendure J.\ \ A general framework for estimating the relative pathogenicity of human genetic variants.\ Nat Genet. 2014 Mar;46(3):310-5.\ PMID: 24487276;\ PMC: PMC3992975\
\ \\ Rentzsch P, Witten D, Cooper GM, Shendure J, Kircher M.\ \ CADD: predicting the deleteriousness of variants throughout the human genome.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894.\ PMID: 30371827;\ PMC: PMC6323892\
\ \\
Schubach M, Maass T, Nazaretyan L, Röner S, Kircher M.\
\
CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to\
improve genome-wide variant predictions.\
Nucleic Acids Res. 2024 Jan 5;52(D1):D1143-D1154.\
PMID: 38183205; PMC:
Description
\\ \ The Cancer Genome Atlas (TCGA), a collaboration between the\ National Cancer Institute (NCI)\ and \ National Human Genome Research Institute (NHGRI), has generated comprehensive,\ multi-dimensional maps of the key genomic changes in 33 types of cancer. The TCGA\ dataset, 2.5 petabytes of data describing tumor tissue and matched normal tissues from\ more than 11,000 patients, is publically available and has been used widely by the\ research community.
\ \\ The Cancer Genome Atlas is a NIH-funded project to catalog genetic mutations\ responsible for cancer. The data shown here is RNA-seq expression data produced by the\ consortium.
\ \For questions or feedback on the data, please contact \ TCGA.\
\ \TCGA Gene Expression
\\ The gene track shows RNA expression level for each TCGA tissue in GENCODE canonical\ genes. The gene scores are a total of all transcripts in that gene.
\ \TCGA Transcript Expression
\\ The transcript track shows RNA expression levels for each TCGA tissue using GENCODE v23\ transcripts.
\ \ \Display Conventions
\\ In Full and Pack display modes, expression for each genomic item (gene/transcript) is\ represented by a colored bar chart, where the height of each bar represents the median\ expression level across all samples for a tissue, and the bar color indicates the\ tissue.
\
\ The bar chart display has the same width and tissue order for all genomic items.\ Mouse hover over a bar will show the tissue and median expression levels.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.
\ \\ This track was designed to be used in conjunction with the GTEx expression tracks that can act as a\ control.
\ \\ The color of each cancer was derived by mapping the tissue of origin to the closest GTEx tissue,\ then taking the GTEx tissue's color. Five cancers did not have a matching GTEx tissue and were\ assigned a rainbow color scheme; these cancers are Cholangiocarcinoma, Esophageal carcinoma, Head\ and Neck squamous cell carcinoma, Sarcoma and Uveal Melanoma.
\ \\ The ordering of the cancers is based on the alphabetical ordering of their GTEx tissues. The five\ cancers that did not match were ordered alphabetically.
\ \Methods
\ \TCGA chose cancers for study based on two broad criteria; poor prognosis/overall \ public health impact and availability of human tumor and matched normal tissue samples that meet \ TCGA\ standards.
\ \\ RNA sequencing was performed using a polyA library and the Illumina HiSeq 2000 platform. All RNA\ sequencing was performed by UNC.
\ \\ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC by\ the Computational Genomics lab, using the \ Toil\ pipeline. The resulting kallisto files were combined to generate a transcript per million (tpm)\ expression matrix using the UCSC tool, kallistoToMatrix. By totaling the TPM values for all\ transcripts associated to the canonical transcript/gene, a condensed gene per million (gpm) matrix\ was made. For both matrices average expression values for each tissue were calculated and used to\ generate a bed6+5 file that is the base of each track. This was done using the UCSC tool,\ expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the UCSC\ tool, bedToBigBed.
\ \Credits
\\ Data shown here are in whole based upon data generated by the \ TCGA Research Network.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Chris Eisenhart \ and Kate Rosenbloom of the UCSC Genome Browser group were responsible for data file\ post-processing, track configuration and display type.
\ \References
\\ J. Vivian et al., \ \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.\
\ phenDis 0 group phenDis\ html tcgaExpr\ longLabel Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23)\ shortLabel Cancer Gene Expr\ superTrack on\ track cancerExpr\ tcgaGeneExpr Cancer Gene Expr bigBarChart Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23) 3 100 0 0 0 127 127 127 0 0 0Description
\\ \ The Cancer Genome Atlas (TCGA), a collaboration between the\ National Cancer Institute (NCI)\ and \ National Human Genome Research Institute (NHGRI), has generated comprehensive,\ multi-dimensional maps of the key genomic changes in 33 types of cancer. The TCGA\ dataset, 2.5 petabytes of data describing tumor tissue and matched normal tissues from\ more than 11,000 patients, is publically available and has been used widely by the\ research community.
\ \\ The Cancer Genome Atlas is a NIH-funded project to catalog genetic mutations\ responsible for cancer. The data shown here is RNA-seq expression data produced by the\ consortium.
\ \For questions or feedback on the data, please contact \ TCGA.\
\ \TCGA Gene Expression
\\ The gene track shows RNA expression level for each TCGA tissue in GENCODE canonical\ genes. The gene scores are a total of all transcripts in that gene.
\ \TCGA Transcript Expression
\\ The transcript track shows RNA expression levels for each TCGA tissue using GENCODE v23\ transcripts.
\ \ \Display Conventions
\\ In Full and Pack display modes, expression for each genomic item (gene/transcript) is\ represented by a colored bar chart, where the height of each bar represents the median\ expression level across all samples for a tissue, and the bar color indicates the\ tissue.
\
\ The bar chart display has the same width and tissue order for all genomic items.\ Mouse hover over a bar will show the tissue and median expression levels.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.
\ \\ This track was designed to be used in conjunction with the GTEx expression tracks that can act as a\ control.
\ \\ The color of each cancer was derived by mapping the tissue of origin to the closest GTEx tissue,\ then taking the GTEx tissue's color. Five cancers did not have a matching GTEx tissue and were\ assigned a rainbow color scheme; these cancers are Cholangiocarcinoma, Esophageal carcinoma, Head\ and Neck squamous cell carcinoma, Sarcoma and Uveal Melanoma.
\ \\ The ordering of the cancers is based on the alphabetical ordering of their GTEx tissues. The five\ cancers that did not match were ordered alphabetically.
\ \Methods
\ \TCGA chose cancers for study based on two broad criteria; poor prognosis/overall \ public health impact and availability of human tumor and matched normal tissue samples that meet \ TCGA\ standards.
\ \\ RNA sequencing was performed using a polyA library and the Illumina HiSeq 2000 platform. All RNA\ sequencing was performed by UNC.
\ \\ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC by\ the Computational Genomics lab, using the \ Toil\ pipeline. The resulting kallisto files were combined to generate a transcript per million (tpm)\ expression matrix using the UCSC tool, kallistoToMatrix. By totaling the TPM values for all\ transcripts associated to the canonical transcript/gene, a condensed gene per million (gpm) matrix\ was made. For both matrices average expression values for each tissue were calculated and used to\ generate a bed6+5 file that is the base of each track. This was done using the UCSC tool,\ expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the UCSC\ tool, bedToBigBed.
\ \Credits
\\ Data shown here are in whole based upon data generated by the \ TCGA Research Network.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Chris Eisenhart \ and Kate Rosenbloom of the UCSC Genome Browser group were responsible for data file\ post-processing, track configuration and display type.
\ \References
\\ J. Vivian et al., \ \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.\
\ phenDis 1 barChartBars Adrenocortical_carcinoma Bladder_Urothelial_Carcinoma Brain_Lower_Grade_Glioma Breast_invasive_carcinoma Cervical_squamous_cell_carcinoma_and_endocervical_adenocarcinoma Colon_adenocarcinoma Glioblastoma_multiforme Kidney_Chromophobe Kidney_renal_clear_cell_carcinoma Kidney_renal_papillary_cell_carcinoma Liver_hepatocellular_carcinoma Lung_adenocarcinoma Lung_squamous_cell_carcinoma Lymphoid_Neoplasm_Diffuse_Large_B-cell_Lymphoma Mesothelioma Ovarian_serous_cystadenocarcinoma Pancreatic_adenocarcinoma Pheochromocytoma_and_Paraganglioma Prostate_adenocarcinoma Rectum_adenocarcinoma Skin_Cutaneous_Melanoma Stomach_adenocarcinoma Testicular_Germ_Cell_Tumors Thymoma Thyroid_carcinoma Uterine_Carcinosarcoma Uterine_Corpus_Endometrioid_Carcinoma Cholangiocarcinoma Esophageal_carcinoma Head_and_Neck_squamous_cell_carcinoma Sarcoma Uveal_Melanoma\ barChartColors \\#8FBC8F #8FBC8F #CDB79E #EEEE00 #EEEE00 #00CDCD #EED5D2 \\#CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #9ACD32 #9ACD32 #9ACD32 \\#FFB6C1 #CD9B1D #D9D9D9 #1E90FF #CDB79E #FFD39B #A6A6A6 #008B45 #008B45 \\#EED5D2 #EED5D2 #ff0000 #ff8d00 #ffdb00 #00d619 #009fff\ barChartLabel Cancer types\ barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/tcgaGeneMatrix.tab\ barChartMetric median\ barChartSampleUrl /gbdb/hgFixed/human/expMatrix/tcgaLargeSamples.tab\ barChartUnit GPM\ bigDataUrl /gbdb/hg38/tcga/tcgaGeneExpr.bb\ defaultLabelFields name2\ group phenDis\ html tcgaExpr\ labelFields name2, name\ longLabel Gene Expression in 33 TCGA Cancer Tissues (GENCODE v23)\ maxLimit 8000\ parent cancerExpr\ shortLabel Cancer Gene Expr\ track tcgaGeneExpr\ type bigBarChart\ visibility pack\ tcgaTranscExpr Cancer Transc Expr bigBarChart Transcript-level Expression in 33 TCGA Cancer Tissues (GENCODE v23) 3 100 0 0 0 127 127 127 0 0 0Description
\\ \ The Cancer Genome Atlas (TCGA), a collaboration between the\ National Cancer Institute (NCI)\ and \ National Human Genome Research Institute (NHGRI), has generated comprehensive,\ multi-dimensional maps of the key genomic changes in 33 types of cancer. The TCGA\ dataset, 2.5 petabytes of data describing tumor tissue and matched normal tissues from\ more than 11,000 patients, is publically available and has been used widely by the\ research community.
\ \\ The Cancer Genome Atlas is a NIH-funded project to catalog genetic mutations\ responsible for cancer. The data shown here is RNA-seq expression data produced by the\ consortium.
\ \For questions or feedback on the data, please contact \ TCGA.\
\ \TCGA Gene Expression
\\ The gene track shows RNA expression level for each TCGA tissue in GENCODE canonical\ genes. The gene scores are a total of all transcripts in that gene.
\ \TCGA Transcript Expression
\\ The transcript track shows RNA expression levels for each TCGA tissue using GENCODE v23\ transcripts.
\ \ \Display Conventions
\\ In Full and Pack display modes, expression for each genomic item (gene/transcript) is\ represented by a colored bar chart, where the height of each bar represents the median\ expression level across all samples for a tissue, and the bar color indicates the\ tissue.
\
\ The bar chart display has the same width and tissue order for all genomic items.\ Mouse hover over a bar will show the tissue and median expression levels.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\ median expression level across all tissues.
\ \\ This track was designed to be used in conjunction with the GTEx expression tracks that can act as a\ control.
\ \\ The color of each cancer was derived by mapping the tissue of origin to the closest GTEx tissue,\ then taking the GTEx tissue's color. Five cancers did not have a matching GTEx tissue and were\ assigned a rainbow color scheme; these cancers are Cholangiocarcinoma, Esophageal carcinoma, Head\ and Neck squamous cell carcinoma, Sarcoma and Uveal Melanoma.
\ \\ The ordering of the cancers is based on the alphabetical ordering of their GTEx tissues. The five\ cancers that did not match were ordered alphabetically.
\ \Methods
\ \TCGA chose cancers for study based on two broad criteria; poor prognosis/overall \ public health impact and availability of human tumor and matched normal tissue samples that meet \ TCGA\ standards.
\ \\ RNA sequencing was performed using a polyA library and the Illumina HiSeq 2000 platform. All RNA\ sequencing was performed by UNC.
\ \\ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC by\ the Computational Genomics lab, using the \ Toil\ pipeline. The resulting kallisto files were combined to generate a transcript per million (tpm)\ expression matrix using the UCSC tool, kallistoToMatrix. By totaling the TPM values for all\ transcripts associated to the canonical transcript/gene, a condensed gene per million (gpm) matrix\ was made. For both matrices average expression values for each tissue were calculated and used to\ generate a bed6+5 file that is the base of each track. This was done using the UCSC tool,\ expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the UCSC\ tool, bedToBigBed.
\ \Credits
\\ Data shown here are in whole based upon data generated by the \ TCGA Research Network.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Chris Eisenhart \ and Kate Rosenbloom of the UCSC Genome Browser group were responsible for data file\ post-processing, track configuration and display type.
\ \References
\\ J. Vivian et al., \ \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.\
\ phenDis 1 barChartBars Adrenocortical_carcinoma Bladder_Urothelial_Carcinoma Brain_Lower_Grade_Glioma Breast_invasive_carcinoma Cervical_squamous_cell_carcinoma_and_endocervical_adenocarcinoma Colon_adenocarcinoma Glioblastoma_multiforme Kidney_Chromophobe Kidney_renal_clear_cell_carcinoma Kidney_renal_papillary_cell_carcinoma Liver_hepatocellular_carcinoma Lung_adenocarcinoma Lung_squamous_cell_carcinoma Lymphoid_Neoplasm_Diffuse_Large_B-cell_Lymphoma Mesothelioma Ovarian_serous_cystadenocarcinoma Pancreatic_adenocarcinoma Pheochromocytoma_and_Paraganglioma Prostate_adenocarcinoma Rectum_adenocarcinoma Skin_Cutaneous_Melanoma Stomach_adenocarcinoma Testicular_Germ_Cell_Tumors Thymoma Thyroid_carcinoma Uterine_Carcinosarcoma Uterine_Corpus_Endometrioid_Carcinoma Cholangiocarcinoma Esophageal_carcinoma Head_and_Neck_squamous_cell_carcinoma Sarcoma Uveal_Melanoma\ barChartColors \\#8FBC8F #8FBC8F #CDB79E #EEEE00 #EEEE00 #00CDCD #EED5D2 \\#CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #CDB79E #9ACD32 #9ACD32 #9ACD32 \\#FFB6C1 #CD9B1D #D9D9D9 #1E90FF #CDB79E #FFD39B #A6A6A6 #008B45 #008B45 \\#EED5D2 #EED5D2 #ff0000 #ff8d00 #ffdb00 #00d619 #009fff\ barChartLabel Cancer types\ barChartMatrixUrl /gbdb/hgFixed/human/expMatrix/tcgaMatrix.tab\ barChartMetric median\ barChartSampleUrl /gbdb/hgFixed/human/expMatrix/tcgaLargeSamples.tab\ barChartUnit TPM\ bigDataUrl /gbdb/hg38/tcga/tcgaTranscExpr.bb\ defaultLabelFields name2\ group phenDis\ html tcgaExpr\ labelFields name2, name\ longLabel Transcript-level Expression in 33 TCGA Cancer Tissues (GENCODE v23)\ maxLimit 8000\ parent cancerExpr\ shortLabel Cancer Transc Expr\ track tcgaTranscExpr\ type bigBarChart\ visibility pack\ ccdsGene CCDS genePred Consensus CDS 0 100 12 120 12 133 187 133 0 0 0Description
\\ This track shows human genome high-confidence gene annotations from the\ Consensus \ Coding Sequence (CCDS) project. This project is a collaborative effort \ to identify a core set of \ human protein-coding regions that are consistently annotated and of high \ quality. The long-term goal is to support convergence towards a standard set \ of gene annotations on the human genome.\
\Collaborators include:\
- \
- European Bioinformatics \ Institute (EBI)\
- National Center for \ Biotechnology Information (NCBI)\
- University of \ California, Santa Cruz (UCSC)\
- Wellcome Trust Sanger \ Institute (WTSI)\
\ For more information on the different gene tracks, see our Genes FAQ.
\ \Methods
\\ CDS annotations of the human genome were obtained from two sources:\ NCBI \ RefSeq and a union of the gene annotations from \ Ensembl and \ Vega, collectively known \ as Hinxton.
\\ Genes with identical CDS genomic coordinates in both sets become CCDS \ candidates. The genes undergo a quality evaluation, which must be approved by \ all collaborators. The following criteria are currently used to assess each\ gene: \
- \
- an initiating ATG (Exception: a non-ATG translation start codon is \ annotated if it has sufficient experimental support), a valid stop codon, and \ no in-frame stop codons (Exception: selenoproteins, which contain a TGA codon \ that is known to be translated to a selenocysteine instead of functioning as \ a stop codon) \
- ability to be translated from the genome reference sequence without frameshifts\
- recognizable splicing sites\
- no intersection with putative pseudogene predictions\
- supporting transcripts and protein homology\
- conservation evidence with other species\
\ A unique CCDS ID is assigned to the CCDS, which links together all gene \ annotations with the same CDS. CCDS gene annotations are under continuous\ review, with periodic updates to this track.\
\ \Credits
\\ This track was produced at UCSC from data downloaded from the\ CCDS project \ web site.\
\ \References
\\
Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T et\
al.\
The Ensembl genome database project.\
Nucleic Acids Res. 2002 Jan 1;30(1):38-41.\
PMID: 11752248; PMC:
\
Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE,\
Ruef BJ et al.\
\
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the\
human and mouse genomes.\
Genome Res. 2009 Jul;19(7):1316-23.\
PMID: 19498102; PMC:
\
Pruitt KD, Tatusova T, Maglott DR.\
\
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts\
and proteins.\
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\
PMID: 15608248; PMC:
Description
\\ Track indicating the location of the centromere sequences.\ Centromeres are specialized chromatin structures that are required for cell division. These\ genomic regions are normally defined by long tracts of tandem repeats, or satellite DNA, that\ contain a limited number of sequence differences to distinguish the linear order of repeat copies.\ The size and repetitive nature of these regions mean they are typically not represented in\ reference assemblies. Unlike all previous versions of the human reference assembly, where the\ centromere regions have been represented by a multi-megabase gap, GRCh38 incorporates centromere\ reference models that provide an initial genomic description derived from chromosome-assigned whole\ genome shotgun (WGS) read libraries of alpha satellite.\
\ \\ Each reference model provides an approximation of the true array sequence organization.\ Although the long-range repeat ordering is not expected to represent the true organization,\ the submissions are expected to provide a biologically rich description of array variants and\ local-monomer organization as observed in the initial WGS read dataset. As a result, these\ sequences serve as a useful mapping target to extend sequence-based studies to sites previously\ omitted from the human reference genome.\
\ \Methods
\\ The sequences are generated based on second-order Markov models of monomer\ variants, and graphical models of larger scale higher order repeats.\ The graphical models are based on an analysis of Sanger reads from the\ HuRef sequencing project (Assembly\ GCA_000002125.1; BioProject\ PRJNA19621),\ and their local-ordering is supported by observed same-read monomer\ adjacencies. The Markov models are generated by the program linearSat, which\ was written for this project and that also generates a linear representation\ of monomer order. The software linearSat generates a second-order Markov\ chain to the size of a given array provided by sequence coverage normalization\ estimates. The sequence definitions of transposable element insertions are\ limited to the sequences directly adjacent to alpha satellite within the read\ database, and incomplete representations are noted with an adjacent\ 100 bp gap. In total, these sequences provide a more complete reference\ of sequence composition and higher order repeat variation inherent to a\ given alpha satellite array, used to assemble centromeric regions of the\ human chromosomes.\
\ \Credits
\\ The data for this track was supplied by\ Karen Miga.\
\ \References
\\
Miga KH, Newton Y, Jain M, Altemose N, Willard HF, Kent WJ.\
\
Centromere reference models for human chromosomes X and Y satellite arrays.\
Genome Res. 2014 Apr;24(4):697-707.\
PMID: 24501022; PMC:
Description
\\ These tracks show the one-to-one v1_nfLO alignments of the GRCh38/hg38 to the\ T2T-CHM13 v2.0 assembly.\
\ \Display Conventions
\\ The track displays boxes joined together by either single or double lines,\ with the boxes represent aligning regions, single lines indicating gaps that\ are largely due to a deletion in the CHM13 v2.0 assembly or an insertion in\ the GRCh38/hg38, and double lines representing more complex gaps that involve\ substantial sequence in both assembly.\
\ \ \Methods
\\
GRCh38/hg38 pre-processing
\\ To prevent ambiguous alignments, all false duplications, as determined by the Genome in a Bottle Consortium\ (GCA_000001405.15_GRCh38_GRC_exclusions_T2Tv2.bed), \ as well as the GRCh38 modeled centromeres,\ were masked from the GRCh38/hg38 primary assembly. In addition, unlocalized and unplaced (random) contigs were removed.\
\ \Alignment and Chain Creation
\\ For the minimap2-based pipeline, the initial chain file was generated using\ nf-LO v1.5.1 with\ minimap2 v2.24 alignments. These \ chains were then split at all locations that contained unaligned segments greater than 1kbp or \ gaps greater than 10kbp. Split chain files were then converted to PAF format\ with extended CIGAR strings using chaintools (v0.1),\ and alignments between nonhomologous chromosomes were removed. The trim-paf operation of\ rustybam (v0.1.29) \ was next used to remove overlapping alignments \ in the query sequence, and then the target sequence, to create 1:1 alignments. PAF alignments \ were converted back to the chain format with paf2chain commit f68eeca, and finally, \ chaintools was used to generate the inverted chain file.\
\ \\ Full commands with parameters used were:\
\\
nextflow run main.nf --source GRCh38.fa --target chm13v2.0.fasta --outdir dir -profile local --aligner minimap2\
python chaintools/src/split.py -c input.chain -o input-split.chain\
python chaintools/src/to_paf.py -c input-split.chain -t target.fa -q query.fa -o input-split.paf\
awk '$1==$6' input-split.paf | rb break-paf --max-size 10000 | rb trim-paf -r | rb invert | rb trim-paf -r | rb invert > out.paf\
paf2chain -i out.paf > out.chain\
python chaintools/src/invert.py -c out.chain -o out_inverted.chain\
\
The above process does not add chain ids or scores. The UCSC utilities\
chainMergeSort and chainScore are used to update the\
chains:\
\
\
chainMergeSort out.chain | chainScore stdin chm13v2.0.2bit hg38.2bit chm13v2.0-hg38.chain\
chainMergeSort out_inverted.chain | chainScore stdin hg38.2bit chm13v2.0.2bit hg38-chm13v2.0.chain\
\ Rustybam trim-paf\ uses dynamic programming and the CIGAR string to find an optimal\ splitting point between overlapping alignments in the query sequence. It\ starts its trimming with the largest overlap and then recursively trims\ smaller overlaps.\
\ \\ Results were validated by using chaintools to confirm that there were no\ overlapping sequences with respect to both CHM13v2.0 and GRCh38 in the\ released chain file. In addition, trimmed alignments were visually inspected\ with SafFire to confirm their quality.\
\ \\ Chains were swapped to make GRCh38/hg38 the target.\
\ \ \Credits
\\ The v1_nflo chains were generated by Nae-Chyun Chen<naechyun.chen@gmail.com>\ and Mitchell Vollger<mvollger@uw.edu>\
\ \References
\\
Nurk S, Koren S, Rhie A, Rautiainen M, et al. The complete sequence of a human genome. bioRxiv, 2021.
\ \ compGeno 1 bigDataUrl /gbdb/hg38/bbi/chm13LiftOver/hg38-chm13v2.ncbi-qnames.over.chain.bb\ color 120,20,0\ group compGeno\ linkDataUrl /gbdb/hg38/bbi/chm13LiftOver/hg38-chm13v2.ncbi-qnames.over.link.bb\ longLabel CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments\ shortLabel CHM13 alignments\ track chm13LiftOver\ type bigChain GCA_009914755.4\ visibility hide\ cytoBand Chromosome Band bed 4 + Chromosome Bands Localized by FISH Mapping Clones 0 100 0 0 0 127 127 127 0 0 0Description
\\ The chromosome band track represents the approximate \ location of bands seen on Giemsa-stained chromosomes.\ Chromosomes are displayed in the browser with the short arm first. \ Cytologically identified bands on the chromosome are numbered outward \ from the centromere on the short (p) and long (q) arms. At low resolution, \ bands are classified using the nomenclature \ [chromosome][arm][band], where band is a \ single digit. Examples of bands on chromosome 3 include 3p2, 3p1, cen, 3q1, \ and 3q2. At a finer resolution, some of the bands are subdivided into \ sub-bands, adding a second digit to the band number, e.g. 3p26. This \ resolution produces about 500 bands. A final subdivision into a \ total of 862 sub-bands is made by adding a period and another digit to the \ band, resulting in 3p26.3, 3p26.2, etc.
\ \Methods
\\ Chromosome band information was downloaded from NCBI\ using the ideogram.gz file for the respective assembly. These data were then \ transformed into our visualization format. See our \ assembly creation documentation for the organism of interest\ to see the specific steps taken to transform these data.\ Band lengths are typically estimated based on FISH or other\ molecular markers interpreted via microscopy.
\\ For some of our older assemblies, greater than 10 years old, the tracks were\ created as detailed below and in Furey and Haussler, 2003.
\\ Barbara Trask, Vivian Cheung, Norma Nowak and others in the BAC Resource\ Consortium used fluorescent in-situ hybridization (FISH) to determine a \ cytogenetic location for large genomic clones on the chromosomes.\ The results from these experiments are the primary source of information used\ in estimating the chromosome band locations.\ For more information about the process, see the paper, Cheung,\ et al., 2001. and the accompanying web site,\ Human BAC Resource.
\\ BAC clone placements in the human sequence are determined at UCSC using a \ combination of full BAC clone sequence, BAC end sequence, and STS marker \ information.
\ \Credits
\\ We would like to thank all the labs that have contributed to this resource:\
- \
- Fred Hutchinson Cancer \ Research Center (FHCRC) \
- National Cancer Institute\ (NCI) \
- Roswell Park Cancer \ Institute (RPCI) \
- The\ Wellcome Trust Sanger Institute (SC) \
- Cedars-Sinai Medical Center (CSMC) \
- Los Alamos National\ Laboratory (LANL) \
- UC San Francisco\ Cancer Center (UCSF) \
References
\\ Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M et\ al.\ \ Integration of cytogenetic landmarks into the draft sequence of the human genome.\ Nature. 2001 Feb 15;409(6822):953-8.\ PMID: 11237021\
\ \\ Furey TS, Haussler D.\ \ Integration of the cytogenetic map with the draft human genome sequence.\ Hum Mol Genet. 2003 May 1;12(9):1037-44.\ PMID: 12700172\
\ \ map 1 group map\ longLabel Chromosome Bands Localized by FISH Mapping Clones\ shortLabel Chromosome Band\ track cytoBand\ type bed 4 +\ visibility hide\ cytoBandIdeo Chromosome Band (Ideogram) bed 4 + Chromosome Bands Localized by FISH Mapping Clones (for Ideogram) 1 100 0 0 0 127 127 127 0 0 0 map 1 group map\ longLabel Chromosome Bands Localized by FISH Mapping Clones (for Ideogram)\ shortLabel Chromosome Band (Ideogram)\ track cytoBandIdeo\ type bed 4 +\ visibility dense\ civic CIViC bigBed 12 + CIViC - Expert & crowd-sourced cancer variant interpretation 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This track shows genomic locations for variants in the\ CIViC (Clinical\ Interpretation of Variants in Cancer) database. These clinically\ relevant variant interpretations are expert and crowd-sourced from\ peer-reviewed literature, clinical trials, and some conference\ abstracts.\
\ \\ Each variant's interpretation is in the context of a broader molecular\ profile: one or more variants grouped together. For example, clinical\ evidence may be relevant to a KRAS G12 mutation on its own, but other\ clinical evidence may relevant for cases with either a mutation in\ KRAS G12 or G13.\
\ \\ The primary points of data from the scientific literature are curated\ as Clinical Evidence, which connects to a molecular profile, which in\ turn connects to the variants shown in this track. Groups of evidence\ can become curator Assertions about the relevence of a molecular\ profile.\
\ \\ The detail for a feature will list diseases and therapies that have\ been associated with a genomic variant. Visiting the CIViC page for a\ variant will allow browsing the Molecular Profiles associated with\ that variant, and in turn each Molecular Profile shows the Clinical\ Evidence and Assertions for various diseases and therapies.\
\ \ \Display Conventions and Configuration
\ \\ There are three types of variant feature types in CIViC: gene, fusion, and\ factor, of which only the gene and fusion fetaures have a genomic location.\
\ \\ Gene variants are shown as a single item, with a name indicating the\ variant's mode: sequence change, gene expression, gene deletion,\ etc.\
\ \\ Fusion variants connect two genes via a structural DNA rearrangement,\ typically in the introns or promotors of genes. For CIViC fusions that\ have an annotated transcript and exon, the exon will be shown as a\ thick bar. If there is an intron associated with the fusion, it will\ be annotated as a thin bar on the feature.\
\ \Data updates
\ \\ This track reflects the monthly data summaries published by CIViC. The\ latest information is always available directly on the CIViC website\ or by its API.\
\ \Data access
\ \\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, via the track name\ "civic".\
\ \Methods
\ \\ The monthly CIViC Variant Summaries were reformatted at UCSC\ to bigBed format. The\ data is updated every month, the week after CIViC data summary\ release. The diseases and therapies associated with a variant are\ collected from the corresponding TSV files from CIViC, using the\ molecular profile summaries as a mapping.\
\ \Credits
\ \\ Thanks to the CIViC contributors and organizers for curating the\ database and making the data available for download.\
\ \Reference
\\ Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA,\ Rieke DT, Kujan L et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical\ interpretation of variants in cancer. Nat Genet. 2017Jan31;49(2):170-174. PMID:\ 28138153; PMC:\ PMC5367263\
\ \ phenDis 1 bigDataUrl /gbdb/hg38/civic/civic.bb\ group phenDis\ longLabel CIViC - Expert & crowd-sourced cancer variant interpretation\ mouseOverField mouseOverHTML\ shortLabel CIViC\ track civic\ type bigBed 12 +\ urls origVariant="https://civicdb.org/variants/$$/summary" alleleRegistryId="https://reg.clinicalgenome.org/redmine/projects/registry/genboree_registry/by_canonicalid?canonicalid=$$" clinvarId="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/" diseaseLink="https://www.disease-ontology.org/?id=DOID:$$"\ clinGenComp ClinGen bigBed 9 + ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity) 0 100 0 0 0 127 127 127 0 0 0Description
\\ \
\
\
\
NOTE:
\
These data are for research purposes only. While the ClinGen data are \
open to the public, users seeking information about a personal medical or \
genetic condition are urged to consult with a qualified physician for \
diagnosis and for answers to personal medical questions.\
\ UCSC presents these data for use by qualified professionals, and even \ such professionals should use caution in interpreting the significance of \ information found here. No single data point should be taken at face \ value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be \ developed or patient advice given on the basis of these data without \ careful consideration of all possible sources of information.\
\\ No attempt to identify individual patients should \ be undertaken. No one is authorized to attempt to identify patients \ by any means.\
\ \\ The Clinical Genome Resource (ClinGen)\ tracks display data generated from several key curation activities related to gene-disease validity,\ dosage sensitivity, and variant pathogenicity.\ ClinGen is a National Institute of Health (NIH)-funded initiative dedicated to \ identifying clinically relevant genes and variants for use in precision medicine and research. \ This is accomplished by harnessing the data from both research efforts and clinical genetic \ testing and using it to propel expert and machine-driven curation activities. \ ClinGen works closely with the National Center for Biotechnology Information (NCBI) of the \ National Library of Medicine (NLM)\ which distributes part of this information through its ClinVar database.\
\ \\ The available data tracks are:\
- \
- ClinGen Dosage Sensitivity Map -Haploinsufficiency (ClinGen \ Haploinsufficiency) and -Triplosensitivity (ClinGen Triplosensitivity) -\ Shows evidence supporting or refuting haploinsufficiency (loss) and triplosensitivity (gain) as \ mechanisms for disease at gene-level and larger genomic regions.\ \
- ClinGen Gene-Disease Validity Classification (ClinGen Validity) -\ Provides a semi-qualitative measurement for the strength of evidence of a gene-disease relationship. \ \
- Clingen CSPEC variant interpretation VCEP specifications -\ Identifies loci that have ClinGen criteria Specification (CSpec) \ information. This is used and \ applied by ClinGen Variant Curation Expert Panels (VCEPs) and biocurators in the classification of variants.\
\ A rating system is used to classify the evidence supporting or refuting dosage\ sensitivity for individual genes and regions, which takes in consideration the following criteria:\ number of causative variants reported, patterns of inheritance, consistency of phenotype, evidence\ from large-scale case-control studies, mutational mechanisms, data from public genome variation \ databases, and expert consensus opinion.\
\\ The system is intended to be of a "dynamic nature", with regions being reevaluated periodically to \ incorporate emerging evidence. The evidence collected is displayed within a publicly available \ database. \ Evidence that haploinsufficiency or triplosensitivity of a gene is associated with a specific \ phenotype will aid in the interpretive assessment of CNVs including that gene or genomic region.\
\\ Similarly, a qualitative classification system is used to correlate the evidence of \ a gene-disease relationship: "Definitive", "Strong", "Moderate", \ "Limited", "Animal Model Only", \ "No Known Disease Relationship", "Disputed", or "Refuted".\
\ \Display Conventions
\Haploinsufficiency/Triplosensitivity tracks
\\ Items are shaded according to dosage sensitivity type, red \ for haploinsufficiency score 3, blue for triplosensitivity score 3, \ and grey for other evidence scores or \ not yet evaluated).\ Mouseover on items shows the supporting evidence of dosage sensitivity.\ Tracks can be filtered according to the supporting evidence of dosage sensitivity.\ \
\ Dosage Scores are used to classify the evidence of the supporting dosage sensitivity map:\
- \
- 0 - no evidence available \
- 1 - little evidence for dosage pathogenicity \
- 2 - some evidence for dosage pathogenicity \
- 3 - sufficient evidence for dosage pathogenicity \
- 30 - gene associated with autosomal recessive phenotype \
- 40 - dosage sensitivity unlikely \
\ For more information on the use of the scores see the ClinGen\ FAQs.\
\ \Gene-Disease Validity track
\ \\ The gene-disease validity classifications are labeled with the disease entity and hovering \ over the features shows the associated gene. Items are color coded based on the strength of their \ classification as provided below:\
\| Color | \Classifications | \
|---|---|
| \ | Definitive: The role of this gene in this particular disease has been \ repeatedly demonstrated and has been upheld over time | \
| \ | Strong: The role of this gene in disease has been independently\ demonstrated typically in at least two separate studies, including both strong variant-level\ evidence in unrelated probands and compelling gene-level evidence from experimental data | \
| \ | Moderate: There is moderate evidence to support a causal role for this\ gene in this disease, typically including both several probands with variants and moderate \ experimental data supporting the gene-disease assertion | \
| \ | Limited: There is limited evidence to support a causal role for this \ gene in this disease, such as few probands with variants and limited experimental data supporting \ the gene-disease assertion | \
| \ | Animal Model Only: There are no published human probands with variants \ but there is animal model data supporting the gene-disease assertion | \
| \ | No Known Disease Relationship: Evidence for a causal role in disease \ has not been reported | \
| \ | Disputed: Conflicting evidence disputing a role for this gene in this \ disease has arisen since the initial report identifying an association between the gene and disease | \
| \ | Refuted: Evidence refuting the role of the gene in the specified \ disease has been reported and significantly outweighs any evidence supporting the role | \
\ The version of the ClinGen Standard Operating Procedures (SOPs) that each gene-disease \ classification was performed with is provided as well. An older or newer SOP version does not \ necessarily mean the classification is any more or less valid but is provided for clarity. \ Each details page also contains a direct link to an evidence summary detailing the rationale behind\ the specific classification and information such as a breakdown of the semi-qualitative framework, \ relevant PubMed IDs, the type of data (Genetic vs Experimental Evidence), and a detailed summary.\
\ \\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view \ within a track has separate display controls, as described \ here.\
\ \ClinGen VCEP Specifications track
\ \\ Item names correspond to the VCEP loci, usually the gene symbol. Mouseovers display the disease with a\ link to the CSpec, the VCEP panel with a link to the ClinGen VCEP page, and the current expert panel status.
\ \Data Updates
\ Our programs check every day if ClinGen has an updated data file, and if so, update the track with the latest file.\ Click the "Data Format" on this track documentation page to see when the track was last updated.\ \Data Access
\\ The raw data can be explored interactively with the Table Browser,\ or the Data Integrator. For automated analysis, the data may \ be queried from our REST API. Please refer to our \ mailing list archives\ for questions, or our Data Access FAQ for more\ information.\
\ \\ Data is also freely available on the ClinGen website \ (gene-disease curation methods) \ and FTP (dosage curations). \
\ \ \Credits
\\ Thank you to ClinGen and NCBI, especially Erin Rooney Riggs, Christa Lese Martin, Tristan Nelson,\ May Flowers, Scott Goehringer, and Phillip Weller for technical coordination and \ consultation, and to Christopher Lee, Luis Nassar, and Anna Benet-Pages of the Genome \ Browser team.\
\ \References
\ \\
Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ, Ledbetter DH, Maglott DR, Martin\
CL, Nussbaum RL et al.\
\
ClinGen--the Clinical Genome Resource.\
N Engl J Med. 2015 Jun 4;372(23):2235-42.\
PMID: 26014595; PMC:
\
Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E\
et al.\
\
Standards and guidelines for the interpretation of sequence variants: a joint consensus\
recommendation of the American College of Medical Genetics and Genomics and the Association for\
Molecular Pathology.\
Genet Med. 2015 May;17(5):405-24.\
PMID: 25741868; PMC:
\
Riggs ER, Church DM, Hanson K, Horner VL, Kaminsky EB, Kuhn RM, Wain KE, Williams ES, Aradhya S,\
Kearney HM et al.\
\
Towards an evidence-based process for the clinical interpretation of copy number variation.\
Clin Genet. 2012 May;81(5):403-12.\
PMID: 22097934; PMC:
\
Strande NT, Riggs ER, Buchanan AH, Ceyhan-Birsoy O, DiStefano M, Dwight SS, Goldstein J, Ghosh R,\
Seifert BA, Sneddon TP et al.\
\
Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed\
by the Clinical Genome Resource.\
Am J Hum Genet. 2017 Jun 1;100(6):895-906.\
PMID: 28552198; PMC:
\
\
The ClinGen CNVs track is no longer being updated. These data, along with updates,\ can be found in the \ ClinVar Copy Number Variants (ClinVar CNVs) track.
\\ See our \ news archive for more information.
\\ \
Description
\\
\
\
\
\
\
NOTE:
\
These data are for research purposes only. While the ClinGen data are\
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal medical questions.\
UCSC presents these data for use by qualified professionals, and even\ such professionals should use caution in interpreting the significance of \ information found here. No single data point should be taken at face \ value and such data should always be used in conjunction with as much \ corroborating data as possible. No treatment protocols should be \ developed or patient advice given on the basis of these data without \ careful consideration of all possible sources of information.\
\ \No attempt to identify individual patients should\ be undertaken. No one is authorized to attempt to identify patients \ by any means.\
\ \\ The Clinical Genome Resource (ClinGen)\ is a National Institutes of Health (NIH)-funded program dedicated to building a genomic\ knowledge base to improve patient care. \ This will be accomplished by harnessing the data from both research efforts and clinical genetic\ testing, and using it to propel expert and machine-driven curation activities. \ By facilitating collaboration within the genomics community,\ we will all better understand the relationship between genomic variation and human health. \ ClinGen will work closely with the National\ Center for Biotechnology Information (NCBI) of the National Library of Medicine (NLM), \ which will distribute this information through its\ ClinVar database.\
\ \\ The ClinGen dataset displays clinical microarray data submitted to dbGaP/dbVar at NCBI\ by ClinGen member laboratories (dbVar study\ nstd37),\ as well as clinical data reported in Kaminsky et al., 2011 (dbVar study\ ntsd101)\ (see reference below). This track shows copy number variants (CNVs) found in patients referred\ for genetic testing for indications such as intellectual disability, developmental delay,\ autism and congenital anomalies. Additionally, the ClinGen "Curated Pathogenic" and\ "Curated Benign" tracks represent genes/genomic regions reviewed for dosage sensitivity\ in an evidence-based manner by the ClinGen Structural Variation Working Group (dbVar study\ nstd45).\
\ \The CNVs in this study have been reviewed for their clinical significance by\ the submitting ClinGen laboratory. Some of the deletions and duplications in the track\ have been reported as causative for a phenotype by the submitting clinical \ laboratory; this information was based on current knowledge at the time of submission.\ However, it should be noted that phenotype information is often vague and imprecise and\ should be used with caution. While all samples were submitted because of a phenotype in \ a patient, only 15% of patients had variants determined to be causal, \ and most patients will have additional variants that are not causal.\
\ \CNVs are separated into subtracks and are labeled as:\
- \
- Pathogenic \
- Uncertain: Likely Pathogenic \
- Uncertain \
- Uncertain: Likely Benign \
- Benign \
Two subtracks, "Path Gain" and "Path Loss", are aggregate tracks\ showing graphically the accumulated level of gains and losses in the \ Pathogenic subtrack across the genome. Similarly, "Benign Gain" and\ "Benign Loss" show the accumulated level of gains and losses in the\ Benign subtrack. These tracks are collectively called "Coverage"\ tracks.\
\ \Many samples have multiple variants, not all of which are causative \ of the phenotype. The CNVs in these samples have been decoupled, so it is not\ possible to connect multiple imbalances as coming from a single patient.\ It is therefore not possible to identify individuals via their genotype. \
\ \ \Methods and Color Convention
\\ The samples were analyzed by arrays from patients referred for \ cytogenetic testing due to clinical phenotypes. Samples were analyzed with a \ probe spacing of 20-75 kb. The minimum CNV breakpoints are shown; if available,\ the maximum CNV breakpoints are provided in the details page, but are not shown \ graphically on the Browser image.\
\ \Data were submitted to \ dbGaP at NCBI and thence decoupled as described into\ dbVar for unrestricted release.\
\ \\ The entries are colored red for loss and \ blue for gain. The names of items use the \ ClinVar convention of appending "_inheritance" indicating the mechanism of \ inheritance, if known: "_pat, _mat, _dnovo, _unk" as paternal, maternal, \ de novo and unknown, respectively. \
\ \Verification
\\ Most data were validated by the submitting laboratory using various methods, \ including FISH, G-banded karyotype, MLPA and qPCR.\
\ \Credits
\\ Thank you to ClinGen and NCBI for technical coordination and consultation, and to\ the UCSC Genome Browser staff for engineering the track display.\
\ \References
\\
Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler\
EE, Epstein CJ et al.\
\
Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals\
with developmental disabilities or congenital anomalies.\
Am J Hum Genet. 2010 May 14;86(5):749-64.\
PMID: 20466091; PMC:
\
Kaminsky EB, Kaul V, Paschall J, Church DM, Bunke B, Kunig D, Moreno-De-Luca D, Moreno-De-Luca A,\
Mulle JG, Warren ST et al.\
\
An evidence-based approach to establish the functional and clinical significance of copy number\
variants in intellectual and developmental disabilities.\
Genet Med. 2011 Sep;13(9):777-84.\
PMID: 21844811; PMC:
Panel: $panel
Status: $status\ noScoreFilter on\ parent clinGenComp on\ shortLabel ClinGen VCEP Specifications\ track clinGenCspec\ type bigBed 9 +\ visibility pack\ clinvarSubLolly ClinVar interp bigLolly ClinVar SNVs submitted interpretations and evidence 0 100 0 0 0 127 127 127 0 0 0 phenDis 1 bigDataUrl /gbdb/hg38/clinvarSubLolly/clinvarSubLolly.bb\ configurable off\ filterLabel.score Filter by variant classification\ filterType.score multiple\ filterValues.score 5|Pathogenic,4|Likely Pathogenic,3|Variant of Unknown Significance,2|Likely Benign,1|Benign,0|Others\ group phenDis\ lollyMaxSize 10\ lollyNoStems on\ lollySizeField 10\ longLabel ClinVar SNVs submitted interpretations and evidence\ mouseOverField _mouseOver\ parent clinvar\ shortLabel ClinVar interp\ skipFields reviewStatus\ track clinvarSubLolly\ type bigLolly\ urls rcvAcc="https://www.ncbi.nlm.nih.gov/clinvar/$$/" geneId="https://www.ncbi.nlm.nih.gov/gene/$$" snpId="https://www.ncbi.nlm.nih.gov/snp/$$" nsvId="https://www.ncbi.nlm.nih.gov/dbvar/variants/$$/" origName="https://www.ncbi.nlm.nih.gov/clinvar/variation/$$/"\ viewLimits 0:5\ xrefDataUrl /gbdb/hg38/clinvarSubLolly/clinvarSub.bb\ yAxisLabel.0 0 on 150,150,150 OTH\ yAxisLabel.1 1 on 150,150,150 B\ yAxisLabel.2 2 on 150,150,150 LB\ yAxisLabel.3 3 on 150,150,150 VUS\ yAxisLabel.4 4 on 150,150,150 LP\ yAxisLabel.5 5 on 150,150,150 P\ yAxisNumLabels off\ clinvar ClinVar Variants bed 12 + ClinVar Variants 0 100 0 0 0 127 127 127 0 0 0
Description
\ \\
\
\
NOTE:
\
ClinVar is intended for use primarily by physicians and other\
professionals concerned with genetic disorders, by genetics researchers, and\
by advanced students in science and medicine. Research data is not easy to interpret, and not\
everything shown is necessarily useful. While the ClinVar\
database is open to all academic users, users seeking information about a\
personal medical or genetic condition are urged to consult with a qualified\
physician for diagnosis and for answers to personal questions.
\ These tracks show the genomic positions of variants in the\ ClinVar database. \ ClinVar is a free, public archive of reports\ of the relationships among human variations and phenotypes, with supporting\ evidence.
\ \\ The ClinVar SNVs track displays substitutions and indels shorter than 50 bp, and \ the ClinVar CNVs track displays copy number variants (CNVs) equal to or larger than 50 bp.\
\ \\ The ClinVar Interpretations track displays the genomic positions of individual variant \ submissions and interpretations of the clinical significance and their relationship to disease in \ the ClinVar database.\
\ \\ Note on the start position of variants: The data in the track are obtained directly from ClinVar's FTP site.\ We display the data obtained from ClinVar as-is to avoid discrepancies between UCSC and NCBI. \ However, be aware that the ClinVar conventions are different from the VCF standard. \ Variants may be right-aligned or may contain additional context, e.g. for\ inserts. The VCF position is also available in this track,\ as an additional field, at the end of the list of fields, when you click any variant.\ It can be extracted using our table browser, the API,\ or the bigBedToBed tool (see the Data access section below). \ And GnomAD has a converter.\
\ \Display Conventions and Configuration
\ \\ Items can be filtered according to the size of the variant, variant type, clinical significance,\ allele origin, phenotype, and molecular consequence, using the track Configure options.\ Each subtrack has separate display controls, as described\ here.\
\ \\ Entries in the ClinVar SNVs and ClinVar Interpretations tracks are colored by clinical \ significance:\
- \
- red for pathogenic \
- dark blue for variant of uncertain significance \
- green for benign \
- dark grey for not provided \
- light blue for conflicting \
\ Entries in the ClinVar CNVs track are colored by type of variant, among others:\
- \
- red for loss \
- blue for gain \
- purple for inversion \
- orange for insertion \
\ In the ClinVar SNV track, an option to show triangles for protein-truncating mutations is available\ under the Decoration settings, using the Glyph decoration placement option. Triangles can be placed\ using either the Overlay or Adjacent display. Variants with the following molecular consequences\ are considered protein-truncating: nonsense, frameshift variant, splice acceptor variant, and\ splice donor variant.
\ \\ Mouseover on the genomic locations of ClinVar variants shows variant details, clinical \ interpretation, and associated conditions. Further information on each variant is displayed on \ the details page by clicking onto any variant. ClinVar is an archive for assertions of clinical \ significance made by the submitters. The level of review supporting the assertion of clinical \ significance for the variation is reported as the \ review status. \ Stars (0 to 4) provide a graphical representation of the aggregate review status. \
\ \\ The variants in the ClinVar Interpretations track are arranged from top to bottom by the variant \ classification of each submission:\
- \
- P: Pathogenic \
- LP: Likely Pathogenic \
- VUS: Variant of Unknown Significance \
- LB: Likely Benign \
- B: Benign \
- OTH: Others \
- \
- Small-sized beads: 1-2 submissions \
- Medium-sized beads: 3-7 submissions \
- Large-sized beads: 8 or more submissions \
\ More information about using and understanding the ClinVar data can be found \ here.\
\ \\ For the human genome version hg19, the hg19 genome released by UCSC in 2009 had a \ mitochondrial genome "chrM" that was not the same as the one later used for most\ databases like ClinVar. As a result, we added the official mitochondrial genome\ in 2020 as "chrMT", and all mitochondrial annotations of ClinVar and most other\ databases are shown on the mitochondrial genome called "chrMT". For a full description\ of the issue of the mitochondrial genome in hg19, please see the \ hg19 README file \ on our download site. \
\ \ \Data updates
\ClinVar tries to publish a new release on the \ first Thursday of every month. \ In practice, the exact day can move by a few days.\ Our track is updated on the day after any ClinVar release, and copied to our public site one day later.\ The exact date of our last update is shown on the track configuration page. \ You can find the previous versions of the track organized by month on our\ downloads server in the \ archive\ directory. To display a previous version of the track, paste the URL to one of\ the older files into the custom track text input field under "My Data > Custom Tracks".
\ \Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track names are\ "clinVarMain" and "clinVarCnv".\ \
\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The files for this track are called clinvarMain.bb and clinvarCnv.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed,\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/bbi/clinvar/clinvarMain.bb -chrom=chr21 -start=0 -end=100000000 stdout\
\ \Methods
\ \\ ClinVar files were reformatted at UCSC to the bigBed format.\ The data is updated every month, one week after the ClinVar release date.\ The program that performs the update is available on\ GitHub.\
\ \Credits
\\ Thanks to NCBI for making the ClinVar data available on their FTP site as a tab-separated file.\ If you email them (clinvar@ncbi.nlm.nih.gov), feel free to CC us, it is always good to learn more about ClinVar.\
\ \References
\\
Landrum MJ, Lee JM, Benson M, Brown G, Chao C, Chitipiralla S, Gu B, Hart J, Hoffman D, Hoover J\
et al.\
\
ClinVar: public archive of interpretations of clinically relevant variants.\
Nucleic Acids Res. 2016 Jan 4;44(D1):D862-8.\
PMID: 26582918; PMC:
\
Azzariti DR, Riggs ER, Niehaus A, Rodriguez LL, Ramos EM, Kattman B, Landrum MJ, Martin CL, Rehm HL.\
\
Points to consider for sharing variant-level information from clinical genetic testing with\
ClinVar.\
Cold Spring Harb Mol Case Stud. 2018 Feb;4(1).\
PMID: 29437798; PMC:
Description
\\ This track shows the NCBI clone end mappings from the\ NCBI Clone DB database. Libraries with more than\ 30,000 clones are included in this track display.\ While the NCBI Clone DB database interface has been retired and is no longer\ available, they were archived and are still accessible for download at NCBI and through the\ UCSC Genome Browser.
\\ Clone availability: most of the clone libraries shown here can\ no longer be ordered. Two librarires that we show are exceptions and are still available\ for ordering from\ BACPAC\ Genomics who still sells the libraries made by and formerly distributed by\ Children's Hospital Oakland Research Institute (CHORI): the \ BCGSC Human 32k BAC Re-Array\ (minimal tiling set, mostly RP11 and CTD clones) and the CHORI-17 (CH17)\ BAC library from a hydatidiform mole.
\\ Bacterial artificial chromosomes (BACs) are a key part of many\ large-scale sequencing projects. A BAC typically consists of 50 - 300 kb of\ DNA. During the early phase of a sequencing project, it is common\ to sequence a single read (approximately 500 bases) off each end of\ a large number of BACs. Later on in the project, these BAC end reads\ can be mapped to the genome sequence.
\\ These BAC end pairs can be useful for validating the assembly over\ relatively long ranges. In some cases, the BACs are useful biological\ reagents. This track can also be used for determining which BAC\ contains a given gene, useful information for certain wet lab experiments.
\\ The scoring scheme used for this annotation assigns 1000 to an alignment\ when the BAC end pair aligns to only one location in the genome (after\ filtering). When a BAC end pair or clone aligns to multiple locations, the\ score is calculated as 1500/(number of alignments).
\ \Display Conventions and Configuration
\ \\ Items in this track are colored according to their strand orientation. Blue indicates alignment to the forward strand, \ and green indicates alignment to the negative strand.\
\ \ \Methods
\\ The mappings of these BAC end sequences are taken directly from the\ NCBI Clone DB FTP site\ ftp.ncbi.nih.gov/repository/clone/reports/Homo_sapiens/\ *.GCF_000001405.26.106.*.gff files.
\\ UCSC filtered the NCBI Clone DB mapped ends to drop ends that mapped to a\ region that was three times longer than the median size of the clones in\ the library. Only libraries with more than\ 30,000 clones are included in this track display.
\\ Click through on displayed items to the Clone DB database information,\ including\ Clone DB distributor references.
\| clone information from NCBI Clone DB and UCSC mapping statistics | ||||||
|---|---|---|---|---|---|---|
| library name | \
total clones | \
total end sequences | \
NCBI mapped ends | \
UCSC filtered ends | \
UCSC dropped | \
per-cent dropped | \
| ABC8 | 2,007,047 | 3,888,476 | 1,205,466 | 1,192,784 | 12,682 | % 1.05 |
| WI2 | 1,122,564 | 2,298,885 | 589,547 | 582,843 | 6,704 | % 1.14 |
| ABC12 | 1,120,939 | 2,169,280 | 778,216 | 771,827 | 6,389 | 0.82 |
| ABC7 | 1,116,966 | 2,152,975 | 650,329 | 644,071 | 6,258 | 0.96 |
| ABC9 | 1,065,503 | 2,084,892 | 757,644 | 750,648 | 6,996 | 0.92 |
| ABC10 | 1,062,082 | 2,121,489 | 788,344 | 781,331 | 7,013 | 0.89 |
| ABC14 | 1,042,929 | 2,089,193 | 846,055 | 839,126 | 6,929 | 0.82 |
| ABC13 | 1,009,643 | 2,057,345 | 811,829 | 803,589 | 8,240 | 1.01 |
| ABC11 | 998,880 | 1,966,644 | 730,565 | 724,864 | 5,701 | 0.78 |
| ABC23 | 942,133 | 1,535,766 | 437,098 | 433,896 | 3,202 | 0.73 |
| ABC16 | 907,948 | 1,534,288 | 452,316 | 449,101 | 3,215 | 0.71 |
| ABC24 | 835,600 | 1,383,475 | 399,056 | 395,776 | 3,280 | 0.82 |
| ABC27 | 768,336 | 1,229,804 | 334,232 | 331,822 | 2,410 | 0.72 |
| ABC18 | 743,640 | 1,204,811 | 325,150 | 322,904 | 2,246 | 0.69 |
| COR2A | 723,569 | 1,441,881 | 583,327 | 578,578 | 4,749 | 0.81 |
| ABC22 | 519,274 | 780,151 | 189,988 | 188,743 | 1,245 | 0.66 |
| ABC21 | 436,930 | 680,160 | 182,214 | 180,973 | 1,241 | 0.68 |
| RP11 | 292,975 | 394,813 | 86,875 | 85,903 | 972 | 1.12 |
| COR02 | 272,396 | 546,984 | 208,377 | 206,782 | 1,595 | 0.77 |
| CTD | 226,848 | 403,688 | 96,594 | 94,941 | 1,653 | 1.71 |
| CH17 | 176,209 | 325,659 | 105,805 | 105,060 | 745 | 0.70 |
| ABC20 | 49,132 | 80,350 | 24,720 | 24,474 | 246 | 1.00 |
| UCSC dropped | 152,979 | n/a | n/a | n/a | n/a | n/a |
| multiple mappings | 775,629 | n/a | n/a | n/a | n/a | n/a |
Credits
\\ Many of the libraries shown here were constructed by\ Pieter J. de Jong\ and colleagues, including the RPCI-11 (RP11) library at the Roswell Park\ Cancer Institute, and the CHORI-17 (CH17) and BCGSC 32k Re-Array libraries\ at BACPAC Genomics (formerly at the Children's Hospital Oakland Research\ Institute, CHORI). For background on de Jong's role in building these\ clone libraries, see this\ Undark profile.
\\ Additional information about the clone, including how it\ can be obtained, may be found at the\ NCBI Clone Registry. To view the registry entry for a\ specific clone, open the details page for the clone and click on its name at\ the top of the page.
\ map 1 compositeTrack on\ dimensions dimensionX=source\ dragAndDrop on\ group map\ longLabel Mapping of clone libraries end placements\ noInherit on\ shortLabel Clone Ends\ sortOrder source=+\ subGroup1 source Source agencourt=Agencourt chori=Chori corielle=Coriell caltech=CalTech rpci=RPCI wibr=WIBR placements=Placements\ track cloneEndSuper\ type bed 3\ visibility hide\ clsLongReadRnaTrack CLS long-read RNAs bigBed 12 Capture long-seq long-read lncRNAs 3 100 0 0 0 127 127 127 0 0 0Description
\\ These tracks represent the results of targeted long-read RNA sequencing\ aimed at identifying lowly expressed lncRNAs in adult and embryonic\ tissues. The track consists of capture target regions, mappings of pre- and\ post-capture reads, and transcript models built from the data.\
\ \\ Portions of this dataset were used to develop the lncRNA annotations\ introduced in GENCODE v47. The data are a superset of the data incorporated\ into GENCODE. The transcript models for a given RNA do not necessarily match\ those in GENCODE and are provided as a guide to exploring the sequencing data.\
\ \\ Detailed descriptions of the data are available at the\ GENCODE CLS Project site.
\ \Display Conventions and Configuration
\\
This is a multi-view composite track containing multiple data types (views). Each view includes subtracks that are displayed individually in the browser. Instructions for configuring multi-view tracks are \
here.
\
\
\
Views:
\
- \
- Targets: Capture target regions \
- Models: Transcript models generated from reads and merging \
- Sample models: Transcript models by sample in which they were observed \
- Per-experiment reads: Read mappings per experiment \
- Per-experiment Models: Transcript models generated from the experiments \
Model Color Coding
\
\ Model annotations are color-coded based on their incorporation into GENCODE V47\ and the assigned GENCODE V47 BioType:\
\- \
- Coding \
- Non-coding \
- Pseudogene \
- To be experimentally confirmed (TEC) \
- Not incorporated into GENCODE V47 \
Methods
\\ This project, led by the \ GENCODE consortium,\ employed the Capture Long-read Sequencing (CLS) protocol to enrich transcripts from targeted genomic regions. It used a large capture array with orthologous probes in human and mouse genomes, targeting non-GENCODE lncRNA annotations and regions suspected of unannotated transcription. CapTrap-Seq, a cDNA library preparation protocol, was used to enrich for full-length RNA molecules (5′ to 3′).\
\ \\ Matched adult and embryonic tissues from human and mouse were selected to maximize transcriptome complexity. Libraries were sequenced pre- and post-capture using PacBio and Oxford Nanopore Technologies (ONT) long-read platforms, as well as short-read technologies.\
\ \\ Transcript isoform models were built from reads using the LyRic analysis software. These were merged using intron chains, with transcription start and end sites anchored using CAGE and poly(A) data.\
\ \\ Data and metadata is discoverable via Array Express entry E-MTAB-14562\
\ \Credits
\\
This dataset was developed by the \
Guigó Lab, Centre for Genomic Regulation (CRG)\
and the GENCODE consortium.
\
The track set was constructed by Sílvia Carbonell-Sala, Andrea Tanzer, and Mark Diekhans.
References
\\ Kaur G, Perteghella T, Carbonell-Sala S, Gonzalez-Martinez J, Hunt T, Mądry T, Jungreis I, Arnan C,\ Lagarde J, Borsari B et al.\ \ GENCODE: massively expanding the lncRNA catalog through capture long-read RNA sequencing.\ bioRxiv. 2024 Oct 31;.\ PMID: 39554180;\ PMC: PMC11565817\
\ \\ Mudge JM, Carbonell-Sala S, Diekhans M, Martinez JG, Hunt T, Jungreis I, Loveland JE, Arnan C,\ Barnes I, Bennett R et al.\ \ GENCODE 2025: reference gene annotation for human and mouse.\ Nucleic Acids Res. 2025 Jan 6;53(D1):D966-D975.\ PMID: 39565199;\ PMC: PMC11701607\
\ \\ Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María\ M, Adams MS, Balderrama-Gutierrez G et al.\ \ Systematic assessment of long-read RNA-seq methods for transcript identification and\ quantification.\ Nat Methods. 2024 Jul;21(7):1349-1363.\ PMID: 38849569;\ PMC: PMC11543605\
\ \\ Carbonell-Sala S, Perteghella T, Lagarde J, Nishiyori H, Palumbo E, Arnan C, Takahashi H, Carninci\ P, Uszczynska-Ratajczak B, Guigó R.\ \ CapTrap-seq: a platform-agnostic and quantitative approach for high-fidelity full-length RNA\ sequencing.\ Nat Commun. 2024 Jun 27;15(1):5278.\ PMID: 38937428;\ PMC: PMC11211341\
\ \\ LyRic: Long RNA-seq analysis workflow \ https://github.com/guigolab/LyRic\
\ rna 1 compositeTrack on\ dimensions dimX=type dimY=sample\ html clsLongReadRna.html\ longLabel Capture long-seq long-read lncRNAs\ parent long_read_transcripts\ shortLabel CLS long-read RNAs\ subGroup1 view Views targets_view=Targets models_view=Models sample_models_view=Sample_models per_expr_models_view=Per-experiment_models per_expr_reads_view=Per-experiment_reads\ subGroup2 sample Sample combined=Combined adult_brain=Adult_Brain embryo_brain=Embryonic_Brain adult_cpoola=Cell_Line_Pool adult_heart=Adult_Heart embryo_heart=Embryonic_Heart adult_liver=Adult_Liver embryo_liver=Embryonic_Liver placenta_placenta=Placenta adult_testis=Adult_Testis adult_tpoola=Tissue_Pool adult_wblood=Adult_Blood embryo_ipsc=Embryonic_iPSC\ subGroup3 type Type targets=Targets models=Models pre_capture_ont_models=Pre-capture_ONT_models pre_capture_pacbio_models=Pre-capture_PacBio_models post_capture_ont_models=Post-capture_ONT_models post_capture_pacbio_models=Post-capture_PacBio_models pre_capture_ont_reads=Pre-capture_ONT_reads pre_capture_pacbio_reads=Pre-capture_PacBio_reads post_capture_ont_reads=Post-capture_ONT_reads post_capture_pacbio_reads=Post-capture_PacBio_reads\ track clsLongReadRnaTrack\ type bigBed 12\ visibility pack\ ghClusteredInteraction Clustered Interactions bigInteract GeneHancer Regulatory Elements and Gene Interactions 3 100 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$Description
\\ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in colon\ cells where cells are grouped by cell type \ (Colon Cells) or donor \ (Colon Donor). The default track \ displayed is Colon Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. Note that the Colon Donor track \ is colored by donor for improved clarity.
\ \Method
\\ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for \ 4,472 cells from two human colon samples. Tissue samples belonged to a male \ donor age 54 (Colon-1) and a female donor age 67 (Colon-2) both diagnosed with \ Adenocarcinoma. The healthy intestinal mucous membranes used for each sample \ were cut away from the tumor border in surgically removed ascending colon tissue. \ Additionally, the intestinal tissues were washed in Hank's balanced salt solution \ (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was enriched \ for epithelial cells through centrifugation before being dissociated with Tryple \ to obtain single-cell suspensions. RNA-seq libraries were prepared using 10x \ Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten PE150.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in colon\ cells where cells are grouped by cell type \ (Colon Cells) or donor \ (Colon Donor). The default track \ displayed is Colon Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. Note that the Colon Donor track \ is colored by donor for improved clarity.
\ \Method
\\ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for \ 4,472 cells from two human colon samples. Tissue samples belonged to a male \ donor age 54 (Colon-1) and a female donor age 67 (Colon-2) both diagnosed with \ Adenocarcinoma. The healthy intestinal mucous membranes used for each sample \ were cut away from the tumor border in surgically removed ascending colon tissue. \ Additionally, the intestinal tissues were washed in Hank's balanced salt solution \ (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was enriched \ for epithelial cells through centrifugation before being dissociated with Tryple \ to obtain single-cell suspensions. RNA-seq libraries were prepared using 10x \ Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten PE150.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in colon\ cells where cells are grouped by cell type \ (Colon Cells) or donor \ (Colon Donor). The default track \ displayed is Colon Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. Note that the Colon Donor track \ is colored by donor for improved clarity.
\ \Method
\\ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for \ 4,472 cells from two human colon samples. Tissue samples belonged to a male \ donor age 54 (Colon-1) and a female donor age 67 (Colon-2) both diagnosed with \ Adenocarcinoma. The healthy intestinal mucous membranes used for each sample \ were cut away from the tumor border in surgically removed ascending colon tissue. \ Additionally, the intestinal tissues were washed in Hank's balanced salt solution \ (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was enriched \ for epithelial cells through centrifugation before being dissociated with Tryple \ to obtain single-cell suspensions. RNA-seq libraries were prepared using 10x \ Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten PE150.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\ \\ The "Constraint scores" container track includes several subtracks showing the results of\ constraint prediction algorithms. These try to find regions of negative\ selection, where variations likely have functional impact. The algorithms do\ not use multi-species alignments to derive evolutionary constraint, but use\ primarily human variation, usually from variants collected by gnomAD (see the\ gnomAD V2 or V3 tracks on hg19 and hg38) or TOPMED (contained in our dbSNP\ tracks and available as a filter). One of the subtracks is based on UK Biobank\ variants, which are not available publicly, so we have no track with the raw data.\ The number of human genomes that are used as the input for these scores are\ 76k, 53k and 110k for gnomAD, TOPMED and UK Biobank, respectively.\
\ \Note that another important constraint score, gnomAD\ constraint, is not part of this container track but can be found in the hg38 gnomAD\ track.\
\ \ The algorithms included in this track are:\- \
- \ JARVIS - "Junk" Annotation genome-wide Residual Variation Intolerance Score: \ JARVIS scores were created by first scanning the entire genome with a\ sliding-window approach (using a 1-nucleotide step), recording the number of\ all TOPMED variants and common variants, irrespective of their predicted effect,\ within each window, to eventually calculate a single-nucleotide resolution\ genome-wide residual variation intolerance score (gwRVIS). That score, gwRVIS\ was then combined with primary genomic sequence context, and additional genomic\ annotations with a multi-module deep learning framework to infer\ pathogenicity of noncoding regions that still remains naive to existing\ phylogenetic conservation metrics. The higher the score, the more deleterious\ the prediction. This score covers the entire genome, except the gaps.\ \
- \ HMC - Homologous Missense Constraint:\ Homologous Missense Constraint (HMC) is a amino acid level measure\ of genetic intolerance of missense variants within human populations.\ For all assessable amino-acid positions in Pfam domains, the number of\ missense substitutions directly observed in gnomAD (Observed) was counted\ and compared to the expected value under a neutral evolution\ model (Expected). The upper limit of a 95% confidence interval for the\ Observed/Expected ratio is defined as the HMC score. Missense variants\ disrupting the amino-acid positions with HMC<0.8 are predicted to be\ likely deleterious. This score only covers PFAM domains within coding regions.\ \
- \ MetaDome - Tolerance Landscape Score (hg19 only):\ MetaDome Tolerance Landscape scores are computed as a missense over synonymous \ variant count ratio, which is calculated in a sliding window (with a size of 21 \ codons/residues) to provide \ a per-position indication of regional tolerance to missense variation. The \ variant database was gnomAD and the score corrected for codon composition. Scores \ <0.7 are considered intolerant. This score covers only coding regions.\ \
- \ MTR - Missense Tolerance Ratio (hg19 only):\ Missense Tolerance Ratio (MTR) scores aim to quantify the amount of purifying \ selection acting specifically on missense variants in a given window of \ protein-coding sequence. It is estimated across sliding windows of 31 codons \ (default) and uses observed standing variation data from the WES component of \ gnomAD version 2.0. Scores\ were computed using Ensembl v95 release. The number of gnomAD 2 exomes used here\ is higher than the number of gnomAD 3 samples (125 exoms versus 76k full genomes), \ and this score only covers coding regions so gnomAD 2 was more appropriate.\ \
- \ LINSIGHT (hg19 only):\ LINSIGHT is a statistical model for estimating negative selection on\ noncoding sequences in the human genome. The LINSIGHT score measures the\ probability of negative selection on non-coding sites which can be used to\ prioritize SNVs associated with genetic diseases or quantify evolutionary\ constraint on regulatory sequences, e.g., enhancers or promoters. More\ specifically, if a non-coding site is under negative selection, it will be\ less likely to have a substitution or SNV in the human lineage. In\ addition, even if we see a SNV at the site, it will tend to segregate at\ low frequency because of selection. See (Huang et al, Nat Genet 2017).\ \
- \ UK Biobank depletion rank score (hg38 only):\ Halldorsson et al. tabulated the number of UK Biobank variants in each\ 500bp window of the genome and compared this number to an expected number\ given the heptamer nucleotide composition of the window and the fraction of\ heptamers with a sequence variant across the genome and their mutational\ classes. A variant depletion score was computed for every overlapping set\ of 500-bp windows in the genome with a 50-bp step size. They then assigned\ a rank (depletion rank (DR)) from 0 (most depletion) to 100 (least\ depletion) for each 500-bp window. Since the windows are overlapping, we\ plot the value only in the central 50bp of the 500bp window, following\ advice from the author of the score,\ Hakon Jonsson, deCODE Genetics. He suggested that the value of the central\ window, rather than the worst possible score of all overlapping windows, is\ the most informative for a position. This score covers almost the entire genome,\ only very few regions were excluded, where the genome sequence had too many gap characters.
Display Conventions and Configuration
\ \JARVIS
\\ JARVIS scores are shown as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The scores were downloaded and converted to a single bigWig file.\ Move the mouse over the bars to display the exact values. A horizontal line is shown at the 0.733\ value which signifies the 90th percentile.
\ See hg19 makeDoc and\ hg38 makeDoc.\\ Interpretation: The authors offer a suggested guideline of > 0.9998 for identifying\ higher confidence calls and minimizing false positives. In addition to that strict threshold, the \ following two more relaxed cutoffs can be used to explore additional hits. Note that these\ thresholds are offered as guidelines and are not necessarily representative of pathogenicity.
\ \\
| Percentile | JARVIS score threshold |
|---|---|
| 99th | 0.9998 |
| 95th | 0.9826 |
| 90th | 0.7338 |
HMC
\\ HMC scores are displayed as a signal ("wiggle") track, with one score per genome position.\ Mousing over the bars displays the exact values. The highly-constrained cutoff\ of 0.8 is indicated with a line.
\\ Interpretation: \ A protein residue with HMC score <1 indicates that missense variants affecting\ the homologous residues are significantly under negative selection (P-value <\ 0.05) and likely to be deleterious. A more stringent score threshold of HMC<0.8\ is recommended to prioritize predicted disease-associated variants.\
\ \MetaDome
\ \ MetaDome data can be found on two tracks, MetaDome and MetaDome All Data.\ The MetaDome track should be used by default for data exploration. In this track\ the raw data containing the MetaDome tolerance scores were converted into a signal ("wiggle")\ track. Since this data was computed on the proteome, there was a small amount of coordinate\ overlap, roughly 0.42%. In these regions the lowest possible score was chosen for display\ in the track to maintain sensitivity. For this reason, if a protein variant is being evaluated,\ the MetaDome All Data track can be used to validate the score. More information\ on this data can be found in the MetaDome FAQ.\\ Interpretation: The authors suggest the following guidelines for evaluating\ intolerance. By default, the MetaDome track displays a horizontal line at 0.7 which \ signifies the first intolerant bin. For more information see the MetaDome publication.
\ \\
| Classification | MetaDome Tolerance Score |
|---|---|
| Highly intolerant | ≤ 0.175 |
| Intolerant | ≤ 0.525 |
| Slightly intolerant | ≤ 0.7 |
MTR
\\ MTR data can be found on two tracks, MTR All data and MTR Scores. In the\ MTR Scores track the data has been converted into 4 separate signal tracks\ representing each base pair mutation, with the lowest possible score shown when\ multiple transcripts overlap at a position. Overlaps can happen since this score\ is derived from transcripts and multiple transcripts can overlap. \ A horizontal line is drawn on the 0.8 score line\ to roughly represent the 25th percentile, meaning the items below may be of particular\ interest. It is recommended that the data be explored using\ this version of the track, as it condenses the information substantially while\ retaining the magnitude of the data.
\ \Any specific point mutations of interest can then be researched in the \ MTR All data track. This track contains all of the information from\ \ MTRV2 including more than 3 possible scores per base when transcripts overlap.\ A mouse-over on this track shows the ref and alt allele, as well as the MTR score\ and the MTR score percentile. Filters are available for MTR score, False Discovery Rate\ (FDR), MTR percentile, and variant consequence. By default, only items in the bottom\ 25 percentile are shown. Items in the track are colored according\ to their MTR percentile:
\- \
- Green items MTR percentiles over 75\
- Black items MTR percentiles between 25 and 75\
- Red items MTR percentiles below 25\
- Blue items No MTR score\
\ Interpretation: Regions with low MTR scores were seen to be enriched with\ pathogenic variants. For example, ClinVar pathogenic variants were seen to\ have an average score of 0.77 whereas ClinVar benign variants had an average score\ of 0.92. Further validation using the FATHMM cancer-associated training dataset saw\ that scores less than 0.5 contained 8.6% of the pathogenic variants while only containing\ 0.9% of neutral variants. In summary, lower scores are more likely to represent\ pathogenic variants whereas higher scores could be pathogenic, but have a higher chance\ to be a false positive. For more information see the MTR-Viewer publication.
\ \Methods
\ \JARVIS
\\ Scores were downloaded and converted to a single bigWig file. See the\ hg19 makeDoc and the\ hg38 makeDoc for more info.\
\ \HMC
\\ Scores were downloaded and converted to .bedGraph files with a custom Python \ script. The bedGraph files were then converted to bigWig files, as documented in our \ makeDoc hg19 build log.
\ \MetaDome
\\
The authors provided a bed file containing codon coordinates along with the scores. \
This file was parsed with a python script to create the two tracks. For the first track\
the scores were aggregated for each coordinate, then the lowest score chosen for any\
overlaps and the result written out to bedGraph format. The file was then converted\
to bigWig with the bedGraphToBigWig utility. For the second track the file\
was reorganized into a bed 4+3 and conveted to bigBed with the bedToBigBed\
utility.
\ See the hg19 makeDoc for details including the build script.
\\ The raw MetaDome data can also be accessed via their Zenodo handle.
\ \MTR
\\ V2\ file was downloaded and columns were reshuffled as well as itemRgb added for the\ MTR All data track. For the MTR Scores track the file was parsed with a python\ script to pull out the highest possible MTR score for each of the 3 possible mutations\ at each base pair and 4 tracks built out of these values representing each mutation.
\\ See the hg19 makeDoc entry on MTR for more info.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hmc/hmc.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \ \Credits
\ \\ Thanks to Jean-Madeleine Desainteagathe (APHP Paris, France) for suggesting the JARVIS, MTR, HMC tracks. Thanks to Xialei Zhang for providing the HMC data file and to Dimitrios Vitsios and Slave Petrovski for helping clean up the hg38 JARVIS files for providing guidance on interpretation. Additional\ thanks to Laurens van de Wiel for providing the MetaDome data as well as guidance on the track development and interpretation. \
\ \ \References
\ \\
Vitsios D, Dhindsa RS, Middleton L, Gussow AB, Petrovski S.\
\
Prioritizing non-coding regions based on human genomic constraint and sequence context with deep\
learning.\
Nat Commun. 2021 Mar 8;12(1):1504.\
PMID: 33686085; PMC:
\ Xiaolei Zhang, Pantazis I. Theotokis, Nicholas Li, the SHaRe Investigators, Caroline F. Wright, Kaitlin E. Samocha, Nicola Whiffin, James S. Ware\ \ Genetic constraint at single amino acid resolution improves missense variant prioritisation and gene discovery.\ Medrxiv 2022.02.16.22271023\
\ \\
Wiel L, Baakman C, Gilissen D, Veltman JA, Vriend G, Gilissen C.\
\
MetaDome: Pathogenicity analysis of genetic variants through aggregation of homologous human protein\
domains.\
Hum Mutat. 2019 Aug;40(8):1030-1038.\
PMID: 31116477; PMC:
\
Silk M, Petrovski S, Ascher DB.\
\
MTR-Viewer: identifying regions within genes under purifying selection.\
Nucleic Acids Res. 2019 Jul 2;47(W1):W121-W126.\
PMID: 31170280; PMC:
\
Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G,\
Hardarson MT, Oddsson A, Jensson BO et al.\
\
The sequences of 150,119 genomes in the UK Biobank.\
Nature. 2022 Jul;607(7920):732-740.\
PMID: 35859178; PMC:
\
Huang YF, Gulko B, Siepel A.\
\
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic\
data.\
Nat Genet. 2017 Apr;49(4):618-624.\
PMID: 28288115; PMC:
Description
\\ The Coriell Cell Line Copy Number Variants track displays\ copy-number variants (CNVs) in chromosomal aberration and inherited disorder\ cell lines in the NIGMS Human Genetic Cell Repository. The Repository,\ sponsored by the National Institute of General Medical Sciences, provides\ scientists around the world with resources for cell and genetic research.\ The samples include highly characterized cell lines and high quality DNA.\ NIGMS Repository samples represent a variety of disease states, chromosomal\ abnormalities, apparently healthy individuals and many distinct human\ populations.\
\ \\ Approximately 1000 samples from the Chromosomal Aberrations and Heritable\ Diseases collections of the NIGMS Repository were genotyped on the Affymetrix\ Genome-Wide Human SNP 6.0 Array and analyzed for CNVs at the Coriell Institute\ for Medical Research. Genotyping data for many of these samples is available\ through dbGaP.\
\ \\ The genotyped samples represent a diverse set of copy-number variants. The\ selection was weighted to over-sample commonly manifested types of aberrations.\ Karyotyping was performed on all NIGMS Repository cell lines that were\ submitted with reported chromosome abnormalities. When available, the ISCN\ description of the sample, based on G-banding and FISH analysis, is included\ in the phenotypic data. Karyotypes for these cells can be viewed in the\ online Repository catalog.\
\ \\ Field definitions for an item description:\
- \
- CN State: Copy Number of the imbalance. Note that all CNVs with\ a copy number of 2 are colored neutral (black) and occur on the sex\ chromosomes, where a CN State of 2 should not be interpreted\ as normal, as it would be on an autosome. \
- Cell Type: Type of cell culture; one of the following:\ B Lymphocyte, Fibroblast, Amniotic fluid-derived cell line or\ Chorionic villus-derived cell line. \
- Description (Diagnosis): May be a medical diagnosis,\ such as "albinism" or a chromosomal phenotype, such as\ "translocation" or other description. \
- ISCN nomenclature: A description of the chromosomal\ karyotype in formal ISCN nomenclature. \
\ CN State item coloring:\
- \
- CN State 0 == score 0 \
- CN State 1 == score 100 \
- CN State 2 == score 200 \
- CN State 3 == score 300 \
- CN State 4 == score 400 \
Credits
\\ We thank Dorit Berlin and Zhenya Tang of the NIGMS Human Genetic Cell\ Repository at the\ Coriell Institute for Medical\ Research for these data.\
\ \References
\\
NCBI dbGaP:\
\
Genotyping NIGMS Chromosomal Aberration and Inherited Disorder Samples.\
\
\
NIGMS Human Genetic Cell Repository\
online catalog at the Coriell Institute for Medical Research.\
\
Description
\\
This track displays data from
\ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| neural | |
| immune | |
| endothelial | |
| glia |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\
Kriegstein AR.\
\
Single-cell genomics identifies cell type-specific molecular changes in autism.\
Science. 2019 May 17;364(6441):685-689.\
PMID: 31097668; PMC:
Description
\\
This track displays data from
\ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| neural | |
| immune | |
| endothelial | |
| glia |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\
Kriegstein AR.\
\
Single-cell genomics identifies cell type-specific molecular changes in autism.\
Science. 2019 May 17;364(6441):685-689.\
PMID: 31097668; PMC:
Description
\\
This track displays data from
\ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| neural | |
| immune | |
| endothelial | |
| glia |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\
Kriegstein AR.\
\
Single-cell genomics identifies cell type-specific molecular changes in autism.\
Science. 2019 May 17;364(6441):685-689.\
PMID: 31097668; PMC:
Description
\\
This track displays data from
\ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| neural | |
| immune | |
| endothelial | |
| glia |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\
Kriegstein AR.\
\
Single-cell genomics identifies cell type-specific molecular changes in autism.\
Science. 2019 May 17;364(6441):685-689.\
PMID: 31097668; PMC:
Description
\\
This track displays data from
\ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| neural | |
| immune | |
| endothelial | |
| glia |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\
Kriegstein AR.\
\
Single-cell genomics identifies cell type-specific molecular changes in autism.\
Science. 2019 May 17;364(6441):685-689.\
PMID: 31097668; PMC:
Description
\\
This track displays data from
\ This track collection contains five bar chart tracks of RNA expression in the human\ cerebral cortex where cells are grouped by cell type \ (Cortex Cells), diagnosis\ (Cortex Diagnosis), donor \ (Cortex Donor), sample \ (Cortex Sample), and sex\ (Cortex Sex). \ The default track displayed is Cortex Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| neural | |
| immune | |
| endothelial | |
| glia |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Cortex Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy cortical samples were taken from 16 controls (ages 4-22) without \ neurological disorders and 15 ASD patients (ages 7-21). A total of 41 post-mortem\ tissue samples were obtained from both the prefrontal cortex (PFC) and anterior\ cingulate cortex (ACC). When present, subcortical white matter was removed\ prior to collection from cortical samples containing all layers of cortical\ grey matter. ASD and control samples were matched for sex and age and processed\ together to minimize batch effects. Nuclei were isolated from brain tissue\ using a glass dounce homogenizer in lysis buffer and then filtered twice\ through a 30 µm cell strainer. Next, samples were processed\ using 10x Genomics 3' library kit and the resulting single-nucleus libraries\ were pooled together and sequenced on an Illumina NovaSeq 6000. This process\ generated 104,559 single-nuclei gene expression profiles in total.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Dmitry Velmeshev and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by by Daniel Schmelter. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\
Kriegstein AR.\
\
Single-cell genomics identifies cell type-specific molecular changes in autism.\
Science. 2019 May 17;364(6441):685-689.\
PMID: 31097668; PMC:
Description
\COSMIC, \ the "Catalogue Of Somatic Mutations In Cancer," is an online database of somatic mutations found in \ human cancer. Focused exclusively on non-inherited acquired mutations, COSMIC combines information \ from a range of sources, curating the described relationships between cancer phenotypes and gene \ (and genomic) mutations. These data are then made available in a number of ways including here in the \ UCSC genome browser, on the COSMIC website with custom analytical tools, or via the\ COSMIC sftp server.\ Publications using COSMIC as a data source may cite our reference below.
\ \Methods
\ \The data in COSMIC are curated from a number of high-quality sources and combined into a single\ resource. The sources include:
\ \- \
- Peer-reviewed journal articles \
- \ CGP laboratories at the Sanger Institute, UK \
- TCGA data portal \
- The ICGC data portal \
- IARC p53 database \
Information on known cancer genes, selected from the \
UCSC was provided with the COSMIC annotations directly, and the file was converted to a bigBed\
for display using the bedToBigBed utility.\
\
Clicking into any item also displays the reference allele, alternate allele, and the\
Cosmic legacy mutation identifier (COSNnnnnn). Outlinks can also be found directly to COSMIC\
for additional information.\
\
The limited data available to UCSC can be explored interactively \
with the Table Browser,\
or the Data Integrator. For automated analysis, the data may be\
queried from our REST API. Please refer to our\
mailing list archives\
for questions, or our Data Access FAQ for more\
information. \
The complete data can be explored and downloaded via the COSMIC \
website.\
For further information on COSMIC, or for help with the information provided, please contact\
\
cosmic@sanger.\
ac.\
uk.\
\
Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L\
et al.\
\
COSMIC: somatic cancer genetics at high-resolution.\
Nucleic Acids Res. 2017 Jan 4;45(D1):D777-D783.\
PMID: 27899578; PMC: COSMIC, \
the "Catalogue Of Somatic Mutations In Cancer," is an online database of somatic mutations found in \
human cancer. Focused exclusively on non-inherited acquired mutations, COSMIC combines information \
from a range of sources, curating the described relationships between cancer phenotypes and gene \
(and genomic) mutations. These data are then made available in a number of ways including here in the \
UCSC genome browser, on the COSMIC website with custom analytical tools, or via the\
COSMIC sftp server.\
Publications using COSMIC as a data source may cite our reference below.Display
\
\
\
Data Access
\
Contacts
\
References
\
Description
\
Methods
\
The data in COSMIC are curated from a number of high-quality sources and combined into a single\ resource. The sources include:
\ \- \
- Peer-reviewed journal articles \
- \ CGP laboratories at the Sanger Institute, UK \
- TCGA data portal \
- The ICGC data portal \
- IARC p53 database \
Information on known cancer genes, selected from the \
The data was downloaded from the COSMIC sftp server. It was first converted to a bed file using\
the UCSC utility cosmicToBed, then converted into a bigBed file using the UCSC utility bedToBigBed.\
The bigBed file is used to generate the track. \
\
Due to licensed material, we do not allow downloads or Table Browser access for the bigBed data. The\
raw data underlying this track can be explored and downloaded via the COSMIC \
website. The\
CosmicMutantExport.tsv.gz file was converted to a BED file using the For further information on COSMIC, or for help with the information provided, please contact\
\
cosmic@sanger.\
ac.\
uk.\
\
Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L\
et al.\
\
COSMIC: somatic cancer genetics at high-resolution.\
Nucleic Acids Res. 2017 Jan 4;45(D1):D777-D783.\
PMID: 27899578; PMC: \
This is a container track for all data related to SARS-CoV-2 for hg38 \
in the UCSC Genome Browser. Click into any of the sub-tracks to see information\
details on the specific annotations. \
This track displays structural variants (SVs) at least 50 bp long\
(deletions, insertions, and complex substitutions) identified by the\
Chinese Pangenome Consortium (CPC) in 58 samples representing 36 Chinese\
minority ethnic groups. \
The upstream release combined the 58 CPC samples with 47 samples from\
Phase 1 of the Human Pangenome Reference Consortium (HPRC) into a single\
pangenome graph built on the T2T-CHM13v2 assembly with Minigraph-Cactus.\
For this track we recomputed allele counts (AC), allele numbers (AN) and\
sample counts (NS) using only the 58 CPC sample columns (those with\
HIFI032* or RY* prefixes in the source VCF) and dropped\
all snarls that no CPC sample carries (HPRC-specific SVs). To see the\
HPRC data on its own, use the HPRC SV tracks elsewhere in this collection. \
A pangenome is a graph that represents many genomes simultaneously, letting\
variants that are missing from a single linear reference be captured and\
typed directly. Variants are shown natively on the hs1 browser and lifted\
to hg38 using the UCSC hs1ToHg38.over.chain.gz chain. The track\
contains 46,092 snarl sites on hs1 and 36,030 lifted to hg38 (10,062 did\
not lift, typically in T2T-added repetitive regions). Items are colored by SV type: \
Each bed item spans from the start of the REF allele to its end on the\
reference. Pure insertions (where REF is a single base) therefore appear\
as narrow single-base marks; DELs and CPX items span the affected reference\
interval. \
The name field is the graph snarl ID (two node identifiers separated\
by strand arrows, e.g. >2541>2547). It is stable across the\
graph but has no meaning outside the CPC pangenome graph file. \
The source VCF was decomposed with bcftools norm -m -any, so each\
graph snarl appears as one VCF row per alternative allele (a single\
bubble in the graph may have 2-20+ alt paths). For this track we first\
compute the CPC-only allele count per alt, drop any alt that no CPC sample\
carries, then collapse all remaining alts sharing the same snarl ID into\
one track item: Available filters: \
Gao et al. 2023 generated PacBio HiFi long reads (mean ~30.65x,\
Sequel II/IIe platforms) for 58 QC-passed samples representing 36\
minority Chinese ethnic groups, complemented with Illumina short reads\
and Oxford Nanopore ultralong reads. Haplotype-phased de novo assemblies\
were produced with\
hifiasm\
v0.16.1 (116 high-quality haplotype assemblies retained after QC) and\
combined with 47 HPRC Phase 1 assemblies into a single variation graph\
built on T2T-CHM13v2 with the Minigraph-Cactus pipeline (Minigraph v0.19\
for the SV skeleton, Cactus v2.1.1 base alignment, hal2vg).\
Graph bubbles were decomposed into variant records with vcfwave\
and normalized with bcftools norm -m -any, yielding the source\
VCF (CPC.HPRC.Phase1.processed.SVs.normed.vcf.gz). The upstream\
Gao et al. release identified 78,072 SVs across the combined 105-sample\
graph. For this track we restrict to the 58 CPC samples (columns matching\
HIFI032* or RY*), recompute AC/AN/NS from those columns\
only, drop snarls with no CPC carrier (HPRC-specific sites), filter to\
alts with ≥50 bp REF/ALT length difference, and collapse by graph snarl\
ID. The final track contains 46,092 snarl sites on hs1; the hg38 version\
is lifted with the UCSC hs1ToHg38.over.chain.gz chain (36,030\
sites, 10,062 did not lift). \
The source VCF is distributed by the\
\
Chinese-Pangenome-Consortium-Phase-I GitHub repository. \
The step-by-step build commands (CPC-only recount, liftOver, snarl\
collapse, bigBed build) are recorded in the UCSC makeDoc for this track\
container:\
\
doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\
\
makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
The data can be explored interactively with the\
Table Browser or\
Data Integrator, and accessed from\
scripts via our API\
(track=cpc1Sv). For automated download, the bigBed files are at\
\
http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/cpc1.bb (native) and\
\
http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/cpc1.bb (lifted).\
Use bigBedToBed to extract features: e.g.\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hs1/lrSv/cpc1.bb -chrom=chr21 -start=0 -end=100000000 stdout The original pangenome VCF is distributed by the Chinese Pangenome\
Consortium; see the\
\
CPC Phase I repository. Thanks to the Chinese Pangenome Consortium and the HPRC Phase 1 team\
for producing and releasing the combined pangenome and its decomposed\
variant calls. \
Gao Y, Yang X, Chen H, Tan X, Yang Z, Deng L, Wang B, Kong S, Li S, Cui Y et al.\
\
A pangenome reference of 36 Chinese populations.\
Nature. 2023 Jul;619(7968):112-121.\
PMID: 37316654; PMC: CpG islands are associated with genes, particularly housekeeping\
genes, in vertebrates. CpG islands are typically common near\
transcription start sites and may be associated with promoter\
regions. Normally a C (cytosine) base followed immediately by a \
G (guanine) base (a CpG) is rare in\
vertebrate DNA because the Cs in such an arrangement tend to be\
methylated. This methylation helps distinguish the newly synthesized\
DNA strand from the parent strand, which aids in the final stages of\
DNA proofreading after duplication. However, over evolutionary time,\
methylated Cs tend to turn into Ts because of spontaneous\
deamination. The result is that CpGs are relatively rare unless\
there is selective pressure to keep them or a region is not methylated\
for some other reason, perhaps having to do with the regulation of gene\
expression. CpG islands are regions where CpGs are present at\
significantly higher levels than is typical for the genome as a whole. \
The unmasked version of the track displays potential CpG islands\
that exist in repeat regions and would otherwise not be visible\
in the repeat masked version.\
\
By default, only the masked version of the track is displayed. To view the\
unmasked version, change the visibility settings in the track controls at\
the top of this page.\
CpG islands were predicted by searching the sequence one base at a\
time, scoring each dinucleotide (+17 for CG and -1 for others) and\
identifying maximally scoring segments. Each segment was then\
evaluated for the following criteria:\
\
Display
\
\
\
\
Data Access
\
cosmicToBed\
utility, and then converted into a bigBed file using the bedToBigBed utility. You can\
download these tools from the\
utilities directory.\
Contacts
\
References
\
Description
\
Description
\
\
Display Conventions and Configuration
\
\
\
\
\
Collapsing of Multi-allelic Sites
\
\
\
\
\
Filters
\
\
\
\
\
Methods
\
\
Data Access
\
\
Credits
\
\
References
\
\
\
SV len: $svLen
Ins len: $insLen
AC: $AC/$alleleNumber
AF: $alleleFreq
Samples: $numSamples
Alts: $numAlts\
parent longReadVariants\
shortLabel CPC 58 SVs\
skipEmptyFields on\
track cpc1Sv\
type bigBed 9 +\
visibility hide\
cpgIslandSuper CpG Islands bed 4 + CpG Islands (Islands < 300 Bases are Light Green) 0 100 0 100 0 128 228 128 0 0 0 Description
\
\
Methods
\
\
\
\
\
\ The entire genome sequence, masking areas included, was\ used for the construction of the track Unmasked CpG.\ The track CpG Islands is constructed on the sequence after\ all masked sequence is removed.\
\ \The CpG count is the number of CG dinucleotides in the island. \ The Percentage CpG is the ratio of CpG nucleotide bases\ (twice the CpG count) to the length. The ratio of observed to expected \ CpG is calculated according to the formula (cited in \ Gardiner-Garden et al. (1987)):\ \
Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)\ \ where N = length of sequence.\
\ The calculation of the track data is performed by the following command sequence:\
\
twoBitToFa assembly.2bit stdout | maskOutFa stdin hard stdout \\\
| cpg_lh /dev/stdin 2> cpg_lh.err \\\
| awk '{$2 = $2 - 1; width = $3 - $2; printf("%s\\t%d\\t%s\\t%s %s\\t%s\\t%s\\t%0.0f\\t%0.1f\\t%s\\t%s\\n", $1, $2, $3, $5, $6, width, $6, width*$7*0.01, 100.0*2*$6/width, $7, $9);}' \\\
| sort -k1,1 -k2,2n > cpgIsland.bed\
\
The unmasked track data is constructed from\
twoBitToFa -noMask output for the twoBitToFa command.\
\
\
Data access
\\ CpG islands and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ All the tables can also be queried directly from our public MySQL\ servers, with more information available on our\ help page as well as on\ our blog.
\\ The source for the cpg_lh program can be obtained from\ src/utils/cpgIslandExt/.\ The cpg_lh program binary can be obtained from: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/cpg_lh (choose "save file")\
\ \Credits
\ \This track was generated using a modification of a program developed by G. Micklem and L. Hillier \ (unpublished).
\ \References
\ \\ Gardiner-Garden M, Frommer M.\ \ CpG islands in vertebrate genomes.\ J Mol Biol. 1987 Jul 20;196(2):261-82.\ PMID: 3656447\
\ regulation 1 altColor 128,228,128\ color 0,100,0\ group regulation\ html cpgIslandSuper\ longLabel CpG Islands (Islands < 300 Bases are Light Green)\ shortLabel CpG Islands\ superTrack on\ track cpgIslandSuper\ type bed 4 +\ crisprAllTargets CRISPR Targets bigBed 9 + CRISPR/Cas9 -NGG Targets, whole genome 0 100 0 0 0 127 127 127 0 0 0 http://crispor.gi.ucsc.edu/crispor.py?org=$D&pos=$S:${&pam=NGGDescription
\ \\ This track shows the DNA sequences targetable by CRISPR RNA guides using\ the Cas9 enzyme from S. pyogenes (PAM: NGG) over the entire\ human (hg38) genome. CRISPR target sites were annotated with\ predicted specificity (off-target effects) and predicted efficiency\ (on-target cleavage) by various\ algorithms through the tool CRISPOR. Sp-Cas9 usually cuts double-stranded DNA three or \ four base pairs 5' of the PAM site.\
\ \Display Conventions and Configuration
\ \\ The track "CRISPR Targets" shows all potential -NGG target sites across the genome.\ The target sequence of the guide is shown with a thick (exon) bar. The PAM\ motif match (NGG) is shown with a thinner bar. Guides\ are colored to reflect both predicted specificity and efficiency. Specificity\ reflects the "uniqueness" of a 20mer sequence in the genome; the less unique a\ sequence is, the more likely it is to cleave other locations of the genome\ (off-target effects). Efficiency is the frequency of cleavage at the target\ site (on-target efficiency).
\ \Shades of gray stand for sites that are hard to target specifically, as the\ 20mer is not very unique in the genome:
\| impossible to target: target site has at least one identical copy in the genome and was not scored | |
| hard to target: many similar sequences in the genome that alignment stopped, repeat? | |
| hard to target: target site was aligned but results in a low specificity score <= 50 (see below) |
Colors highlight targets that are specific in the genome (MIT specificity > 50) but have different predicted efficiencies:
\| unable to calculate Doench/Fusi 2016 efficiency score | |
| low predicted cleavage: Doench/Fusi 2016 Efficiency percentile <= 30 | |
| medium predicted cleavage: Doench/Fusi 2016 Efficiency percentile > 30 and < 55 | |
| high predicted cleavage: Doench/Fusi 2016 Efficiency > 55 |
\ \
\
Mouse-over a target site to show predicted specificity and efficiency scores:
\
- \
- The MIT Specificity score summarizes all off-targets into a single number from\ 0-100. The higher the number, the fewer off-target effects are expected. We\ recommend guides with an MIT specificity > 50. \
- The efficiency score tries to predict if a guide leads to rather strong or\
weak cleavage. According to (Haeussler et al. 2016), the
- The
Click onto features to show all scores and predicted off-targets with up to\ four mismatches. The Out-of-Frame score by Bae et al. 2014\ is correlated with\ the probability that mutations induced by the guide RNA will disrupt the open\ reading frame. The authors recommend out-of-frame scores > 66 to create\ knock-outs with a single guide efficiently.
\ \
Off-target sites are sorted by the CFD (Cutting Frequency Determination)\ score (Doench et al. 2016).\ The higher the CFD score, the more likely there is off-target cleavage at that site.\ Off-targets with a CFD score < 0.023 are not shown on this page, but are available when\ following the link to the external CRISPOR tool.\ When compared against experimentally validated off-targets by\ Haeussler et al. 2016, the large majority of predicted\ off-targets with CFD scores < 0.023 were false-positives. For storage and performance\ reasons, on the level of individual off-targets, only CFD scores are available.
\ \Methods
\ \Relationship between predictions and experimental data
\ \\ Like most algorithms, the MIT specificity score is not always a perfect\ predictor of off-target effects. Despite low scores, many tested guides\ caused few and/or weak off-target cleavage when tested with whole-genome assays\ (Figure 2 from Haeussler\ et al. 2016), as shown below, and the published data contains few data points\ with high specificity scores. Overall though, the assays showed that the higher\ the specificity score, the lower the off-target effects.
\ \
\
\
Similarly, efficiency scoring is not very accurate: guides with low\ scores can be efficient and vice versa. As a general rule, however, the higher\ the score, the less likely that a guide is very inefficient. The\ following histograms illustrate, for each type of score, how the share of\ inefficient guides drops with increasing efficiency scores:\
\ \
\
\
When reading this plot, keep in mind that both scores were evaluated on\ their own training data. Especially for the Moreno-Mateos score, the\ results are too optimistic, due to overfitting. When evaluated on independent\ datasets, the correlation of the prediction with other assays was around 25%\ lower, see Haeussler et al. 2016. At the time of\ writing, there is no independent dataset available yet to determine the\ Moreno-Mateos accuracy for each score percentile range.
\ \Track methods
\\
The entire human (hg38) genome was scanned for the -NGG motif. Flanking 20mer\
guide sequences were\
aligned to the genome with BWA and scored with MIT Specificity scores using the\
command-line version of crispor.org. Non-unique guide sequences were skipped.\
Flanking sequences were extracted from the genome and input for Crispor\
efficiency scoring, available from the
\ Note that the Doench 2016 scores were updated by\ the Broad institute in 2017 ("Azimuth" update). As a result, earlier versions of\ the track show the old Doench 2016 scores and this version of the track shows new\ Doench 2016 scores. Old and new scores are almost identical, they are\ correlated to 0.99 and for more than 80% of the guides the difference is below 0.02.\ However, for very few guides, the difference can be bigger. In case of doubt, we recommend\ the new scores. Crispor.org can display both\ scores and many more with the "Show all scores" link.
\ \Data Access
\\ Positional data can be explored interactively with the \ Table\ Browser or the Data Integrator.\ For small programmatic positional queries, the track can be accessed using our \ REST API. For genome-wide data or \ automated analysis, CRISPR genome annotations can be downloaded from\ our download server\ as a bigBedFile.
\\ The files for this track are called crispr.bb, which lists positions and\ scores, and crisprDetails.tab, which has information about off-target matches. Individual\ regions or whole genome annotations can be obtained using our tool bigBedToBed,\ which can be compiled from the source code or downloaded as a pre-compiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here. The tool\ can also be used to obtain only features within a given range, e.g.
\\ bigBedToBed\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/crisprAllTargets/crispr.bb -chrom=chr21\ -start=0 -end=1000000 stdout
\ \Credits
\ \\ Track created by Maximilian Haeussler, with helpful input\ from Jean-Paul Concordet (MNHN Paris) and Alberto Stolfi (NYU).\
\ \References
\ \\
Haeussler M, Schönig K, Eckert H, Eschstruth A, Mianné J, Renaud JB, Schneider-Maunoury S,\
Shkumatava A, Teboul L, Kent J et al.\
Evaluation of off-target and on-target scoring algorithms and integration into the\
guide RNA selection tool CRISPOR.\
Genome Biol. 2016 Jul 5;17(1):148.\
PMID: 27380939; PMC:
\ Bae S, Kweon J, Kim HS, Kim JS.\ \ Microhomology-based choice of Cas9 nuclease target sites.\ Nat Methods. 2014 Jul;11(7):705-6.\ PMID: 24972169\
\ \\
Doench JG, Fusi N, Sullender M, Hegde M, Vaimberg EW, Donovan KF, Smith I, Tothova Z, Wilen C,\
Orchard R et al.\
\
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9.\
Nat Biotechnol. 2016 Feb;34(2):184-91.\
PMID: 26780180; PMC:
\
Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O\
et al.\
\
DNA targeting specificity of RNA-guided Cas9 nucleases.\
Nat Biotechnol. 2013 Sep;31(9):827-32.\
PMID: 23873081; PMC:
\
Moreno-Mateos MA, Vejnar CE, Beaudoin JD, Fernandez JP, Mis EK, Khokha MK, Giraldez AJ.\
\
CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.\
Nat Methods. 2015 Oct;12(10):982-8.\
PMID: 26322839; PMC:
\ Description
\\
This track collection shows data from \
Single-nucleus cross-tissue molecular reference maps toward\
understanding disease gene function. The dataset covers ~200,000 single nuclei\
from a total of 16 human donors across 25 samples, using 4 different sample preparation\
protocols followed by droplet based single-cell RNA-seq. The samples were obtained from\
frozen tissue as part of the Genotype-Tissue Expression (GTEx) project.\
Samples were taken from the esophagus, skeletal muscle, heart, lung, prostate, breast,\
and skin. The dataset includes 43 broad cell classes, some specific to certain tissues\
and some shared across all tissue types.\
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ This track collection contains three bar chart tracks of RNA expression. The first track,\ Cross Tissue Nuclei, allows\ cells to be grouped together and faceted on up to 4 categories: tissue, cell class, cell subclass,\ and cell type. The second track,\ Cross Tissue Details, allows\ cells to be grouped together and faceted on up to 7 categories: tissue, cell class, cell subclass,\ cell type, granular cell type, sex, and donor. The third track,\ GTEx Immune Atlas,\ allows cells to be grouped together and faceted on up to 5 categories: tissue, cell type, cell\ class, sex, and donor.\
\ \\ Please see the\ GTEx portal\ for further interactive displays and additional data.
\ \Display Conventions and Configuration
\\ Tissue-cell type combinations in the Full and Combined tracks are\ colored by which cell type they belong to in the below table:\
\
| Color | \Cell Type | \
|---|---|
| Endothelial | |
| Epithelial | |
| Glia | |
| Immune | |
| Neuron | |
| Stromal | |
| Other |
\ Tissue-cell type combinations in the Immune Atlas track are shaded according\ to the below table:\
| Color | \Cell Type | \
|---|---|
| Inflammatory Macrophage | |
| Lung Macrophage | |
| Monocyte/Macrophage FCGR3A High | |
| Monocyte/Macrophage FCGR3A Low | |
| Macrophage HLAII High | |
| Macrophage LYVE1 High | |
| Proliferating Macrophage | |
| Dendritic Cell 1 | |
| Dendritic Cell 2 | |
| Mature Dendritic Cell | |
| Langerhans | |
| CD14+ Monocyte | |
| CD16+ Monocyte | |
| LAM-like | |
| Other |
Methods
\\ Using the previously collected tissue samples from the Genotype-Tissue Expression\ project, nuclei were isolated using four different protocols and sequenced\ using droplet based single cell RNA-seq. CellBender v2.1 and other standard quality\ control techniques were applied, resulting in 209,126 nuclei profiles across eight\ tissues, with a mean of 918 genes and 1519 transcripts per profile.\
\ \\ Data from all samples was integrated with a conditional variation autoencoder\ in order to correct for multiple sources of variation like sex, and protocol\ while preserving tissue and cell type specific effects.\
\ \\ For detailed methods, please refer to Eraslan et al, or the\ \ GTEx portal website.\
\ \UCSC Methods
\\
The gene expression files were downloaded from the\
\
GTEx portal. The UCSC command line utilities matrixClusterColumns,\
matrixToBarChartBed, and bedToBigBed were used to transform\
these into a bar chart format bigBed file that can be visualized.\
The UCSC utilities can be found on\
our download server.\
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the GTEx Consortium for creating and analyzing these data.
\ \References
\\
Eraslan G, Drokhlyansky E, Anand S, Fiskin E, Subramanian A, Slyper M, Wang J, Van Wittenberghe N,\
Rouhana JM, Waldman J et al.\
\
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function.\
Science. 2022 May 13;376(6594):eabl4290.\
PMID: 35549429; PMC:
Description
\ \\ This composite track contains information about single nucleotide polymorphisms (SNPs)\ and small insertions and deletions (indels) — collectively Simple\ Nucleotide Polymorphisms — from\ dbSNP, available from\ ftp.ncbi.nih.gov/snp.\ You can click into each track for a version/subset-specific description.
\\ This collection includes numbered versions of the entire dbSNP datasets\ (All SNP) as well as three tracks with subsets of the items in that version. \ Here is information on each of the subsets:\
- \
- dbSNP 153: The dbSNP build 153 is composed of 5 subtracks. Click the track for\ a description of the subtracks. \
- Common SNPs: SNPs that have a minor allele frequency\ of at least 1% and are mapped to a single location in the reference\ genome assembly. Frequency data are not available for all SNPs,\ so this subset is incomplete. \
- Flagged SNPs: SNPs flagged as clinically associated by dbSNP, \ mapped to a single location in the reference genome assembly, and \ not known to have a minor allele frequency of at least 1%.\ Frequency data are not available for all SNPs, so this subset may\ include some SNPs whose true minor allele frequency is 1% or greater. \
- Mult. SNPs: SNPs that have been mapped to multiple locations\ in the reference genome assembly. \
\ The default maximum weight for this track is 1, so unless\ the setting is changed in the track controls, SNPs that map to multiple genomic \ locations will be omitted from display. When a SNP's flanking sequences \ map to multiple locations in the reference genome, it calls into question \ whether there is true variation at those sites, or whether the sequences\ at those sites are merely highly similar but not identical.\
\ \Interpreting and Configuring the Graphical Display
\\ Variants are shown as single tick marks at most zoom levels.\ When viewing the track at or near base-level resolution, the displayed\ width of the SNP corresponds to the width of the variant in the reference\ sequence. Insertions are indicated by a single tick mark displayed between\ two nucleotides, single nucleotide polymorphisms are displayed as the width \ of a single base, and multiple nucleotide variants are represented by a \ block that spans two or more bases.\
\ \\ On the track controls page, SNPs can be colored and/or filtered from the \ display according to several attributes:\
\- \
\
- \
\
Class: Describes the observed alleles
\- \
- Single - single nucleotide variation: all observed alleles are single nucleotides\ \ (can have 2, 3 or 4 alleles) \
- In-del - insertion/deletion \
- Heterozygous - heterozygous (undetermined) variation: allele contains string '(heterozygous)' \
- Microsatellite - the observed allele from dbSNP is a variation in counts of short tandem repeats \
- Named - the observed allele from dbSNP is given as a text name instead of raw sequence, e.g., (Alu)/- \
- No Variation - the submission reports an invariant region in the surveyed sequence \
- Mixed - the cluster contains submissions from multiple classes \
- Multiple Nucleotide Polymorphism (MNP) - the alleles are all of the same length, and length > 1 \
- Insertion - the polymorphism is an insertion relative to the reference assembly \
- Deletion - the polymorphism is a deletion relative to the reference assembly \
- Unknown - no classification provided by data contributor \
\
\
\
- \
\
Validation: Method used to validate\
\ the variant (each variant may be validated by more than one method)
\- \
- By Frequency - at least one submitted SNP in cluster has frequency data submitted \
- By Cluster - cluster has at least 2 submissions, with at least one submission assayed with a non-computational method \
- By Submitter - at least one submitter SNP in cluster was validated by independent assay \
- By 2 Hit/2 Allele - all alleles have been observed in at least 2 chromosomes \
- By HapMap (human only) - submitted by\ HapMap project \
- By 1000Genomes (human only) - submitted by\ \ 1000Genomes project \
- Unknown - no validation has been reported for this variant \
\
- \
\
Function: dbSNP's predicted functional effect of variant on RefSeq transcripts,\
both curated (NM_* and NR_*) as in the RefSeq Genes track and predicted (XM_* and XR_*),\
not shown in UCSC Genome Browser.\
A variant may have more than one functional role if it overlaps\
multiple transcripts.\
These terms and definitions are from the Sequence Ontology (SO); click on a term to view it in the\
MISO Sequence Ontology Browser.
\- \
- Unknown - no functional classification provided (possibly intergenic) \
- synonymous_variant -\ \ A sequence variant where there is no resulting change to the encoded amino acid\ \ (dbSNP term: coding-synon) \
- intron_variant -\ \ A transcript variant occurring within an intron\ \ (dbSNP term: intron) \
- downstream_gene_variant -\ \ A sequence variant located 3' of a gene\ \ (dbSNP term: near-gene-3) \
- upstream_gene_variant -\ \ A sequence variant located 5' of a gene\ \ (dbSNP term: near-gene-5) \
- nc_transcript_variant -\ \ A transcript variant of a non coding RNA gene\ \ (dbSNP term: ncRNA) \ \
- stop_gained -\ \ A sequence variant whereby at least one base of a codon is changed, resulting in\ \ a premature stop codon, leading to a shortened transcript\ \ (dbSNP term: nonsense) \
- missense_variant -\ \ A sequence variant, where the change may be longer than 3 bases, and at least\ \ one base of a codon is changed resulting in a codon that encodes for a\ \ different amino acid\ \ (dbSNP term: missense) \
- stop_lost -\ \ A sequence variant where at least one base of the terminator codon (stop)\ \ is changed, resulting in an elongated transcript\ \ (dbSNP term: stop-loss) \
- frameshift_variant -\ \ A sequence variant which causes a disruption of the translational reading frame,\ \ because the number of nucleotides inserted or deleted is not a multiple of three\ \ (dbSNP term: frameshift) \
- inframe_indel -\ \ A coding sequence variant where the change does not alter the frame\ \ of the transcript\ \ (dbSNP term: cds-indel) \
- 3_prime_UTR_variant -\ \ A UTR variant of the 3' UTR\ \ (dbSNP term: untranslated-3) \
- 5_prime_UTR_variant -\ \ A UTR variant of the 5' UTR\ \ (dbSNP term: untranslated-5) \
- splice_acceptor_variant -\ \ A splice variant that changes the 2 base region at the 3' end of an intron\ \ (dbSNP term: splice-3) \
- splice_donor_variant -\ \ A splice variant that changes the 2 base region at the 5' end of an intron\ \ (dbSNP term: splice-5) \
- \
\
- Locus:\ \ downstream_gene_variant,\ \ upstream_gene_variant \ \
- Coding - Synonymous:\ \ synonymous_variant\ \
- Coding - Non-Synonymous:\ \ stop_gained,\ \ missense_variant,\ \ stop_lost,\ \ frameshift_variant,\ \ inframe_indel \
- Untranslated:\ \ 5_prime_UTR_variant,\ \ 3_prime_UTR_variant \ \
- Intron:\ \ intron_variant \ \
- Splice Site:\ \ splice_acceptor_variant,\ \ splice_donor_variant\
\
- \
\
Molecule Type: Sample used to find this variant
\- \
- Genomic - variant discovered using a genomic template \
- cDNA - variant discovered using a cDNA template \
- Unknown - sample type not known \
\
- \
\
Unusual Conditions (UCSC): UCSC checks for several anomalies \
that may indicate a problem with the mapping, and reports them in the \
Annotations section of the SNP details page if found:\
- \
- AlleleFreqSumNot1 - Allele frequencies do not sum\ to 1.0 (+-0.01). This SNP's allele frequency data are\ \ probably incomplete. \
- DuplicateObserved,\ MixedObserved - Multiple distinct insertion SNPs have \ \ been mapped to this location, with either the same inserted \ \ sequence (Duplicate) or different inserted sequence (Mixed). \
- FlankMismatchGenomeEqual,\ \ FlankMismatchGenomeLonger,\ \ FlankMismatchGenomeShorter - NCBI's alignment of\ the flanking sequences had at least one mismatch or gap\ \ near the mapped SNP position.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.) \
- MultipleAlignments - This SNP's flanking sequences \ align to more than one location in the reference assembly. \
- NamedDeletionZeroSpan - A deletion (from the\ genome) was observed but the annotation spans 0 bases.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.) \
- NamedInsertionNonzeroSpan - An insertion (into the\ genome) was observed but the annotation spans more than 0\ bases. (UCSC's re-alignment of flanking sequences to the\ genome may be informative.) \
- NonIntegerChromCount - At least one allele\ frequency corresponds to a non-integer (+-0.010000) count of\ chromosomes on which the allele was observed. The reported\ total sample count for this SNP is probably incorrect. \
- ObservedContainsIupac - At least one observed allele \ from dbSNP contains an IUPAC ambiguous base (e.g., R, Y, N). \
- ObservedMismatch - UCSC reference allele does not\ match any observed allele from dbSNP. This is tested only\ \ for SNPs whose class is single, in-del, insertion, deletion,\ \ mnp or mixed. \
- ObservedTooLong - Observed allele not given (length\ too long). \
- ObservedWrongFormat - Observed allele(s) from dbSNP\ have unexpected format for the given class. \
- RefAlleleMismatch - The reference allele from dbSNP\ does not match the UCSC reference allele, i.e., the bases in\ \ the mapped position range. \
- RefAlleleRevComp - The reference allele from dbSNP\ matches the reverse complement of the UCSC reference\ allele. \
- SingleClassLongerSpan - All observed alleles are\ single-base, but the annotation spans more than 1 base.\ (UCSC's re-alignment of flanking sequences to the genome may\ be informative.) \
- SingleClassZeroSpan - All observed alleles are\ single-base, but the annotation spans 0 bases. (UCSC's\ re-alignment of flanking sequences to the genome may be\ informative.) \
- \
- SingleClassTriAllelic, SingleClassQuadAllelic - \ Class is single and three or four different bases have been\ \ observed (usually there are only two). \
\
- \
\
Miscellaneous Attributes (dbSNP): several properties extracted\
from dbSNP's SNP_bitfield table\
(see dbSNP_BitField_v5.pdf for details)\
- \
- Clinically Associated (human only) - SNP is in OMIM and/or at \ \ least one submitter is a Locus-Specific Database. This does\ \ not necessarily imply that the variant causes any disease,\ \ only that it has been observed in clinical studies. \
- Appears in OMIM/OMIA - SNP is mentioned in \ \ Online Mendelian Inheritance in Man for \ \ human SNPs, or Online Mendelian Inheritance in Animals for \ \ non-human animal SNPs. Some of these SNPs are quite common,\ \ others are known to cause disease; see OMIM/OMIA for more\ \ information. \
- Has Microattribution/Third-Party Annotation - At least\ \ one of the SNP's submitters studied this SNP in a biomedical\ \ setting, but is not a Locus-Specific Database or OMIM/OMIA. \
- Submitted by Locus-Specific Database - At least one of\ \ the SNP's submitters is associated with a database of variants\ \ associated with a particular gene. These variants may or may\ \ not be known to be causative. \
- MAF >= 5% in Some Population - Minor Allele Frequency is \ \ at least 5% in at least one population assayed. \
- MAF >= 5% in All Populations - Minor Allele Frequency is \ \ at least 5% in all populations assayed. \
- Genotype Conflict - Quality check: different genotypes \ \ have been submitted for the same individual. \
- Ref SNP Cluster has Non-overlapping Alleles - Quality\ \ check: this reference SNP was clustered from submitted SNPs\ \ with non-overlapping sets of observed alleles. \
- Some Assembly's Allele Does Not Match Observed - \ \ Quality check: at least one assembly mapped by dbSNP has an allele\ at the mapped position that is not present in this SNP's observed\ alleles. \
\
- \
- \
\
Average heterozygosity: Calculated by dbSNP as described in \
\
Computation of Average Heterozygosity and Standard Error for dbSNP RefSNP Clusters.\
- \
- Average heterozygosity should not exceed 0.5 for bi-allelic \ single-base substitutions. \
\
- \
\
Weight: Alignment quality assigned by dbSNP
\- \
- Weight can be 0, 1, 2, 3 or 10. \
- Weight = 1 are the highest quality alignments. \
- Weight = 0 and weight = 10 are excluded from the data set. \
- A filter on maximum weight value is supported, which defaults to 1\ on all tracks except the Mult. SNPs track, which defaults to 3. \
\
- \ \ Submitter handles: These are short, single-word identifiers of\ labs or consortia that submitted SNPs that were clustered into this\ reference SNP by dbSNP (e.g., 1000GENOMES, ENSEMBL, KWOK). Some SNPs\ have been observed by many different submitters, and some by only a\ single submitter (although that single submitter may have tested a\ large number of samples).\ \
- \ \ AlleleFrequencies: Some submissions to dbSNP include \ allele frequencies and the study's sample size \ (i.e., the number of distinct chromosomes, which is two times the\ number of individuals assayed, a.k.a. 2N). dbSNP combines all\ available frequencies and counts from submitted SNPs that are \ clustered together into a reference SNP.\ \
\ You can configure this track such that the details page displays\ the function and coding differences relative to \ particular gene sets. Choose the gene sets from the list on the SNP \ configuration page displayed beneath this heading: On details page,\ show function and coding differences relative to. \ When one or more gene tracks are selected, the SNP details page \ lists all genes that the SNP hits (or is close to), with the same keywords \ used in the function category. The function usually \ agrees with NCBI's function, except when NCBI's functional annotation is \ relative to an XM_* predicted RefSeq (not included in the UCSC Genome \ Browser's RefSeq Genes track) and/or UCSC's functional annotation is \ relative to a transcript that is not in RefSeq.\
\ \Insertions/Deletions
\\ dbSNP uses a class called 'in-del'. We compare the length of the\ reference allele to the length(s) of observed alleles; if the\ reference allele is shorter than all other observed alleles, we change\ 'in-del' to 'insertion'. Likewise, if the reference allele is longer\ than all other observed alleles, we change 'in-del' to 'deletion'.\
\ \UCSC Re-alignment of flanking sequences
\\ dbSNP determines the genomic locations of SNPs by aligning their flanking \ sequences to the genome.\ UCSC displays SNPs in the locations determined by dbSNP, but does not\ have access to the alignments on which dbSNP based its mappings.\ Instead, UCSC re-aligns the flanking sequences \ to the neighboring genomic sequence for display on SNP details pages. \ While the recomputed alignments may differ from dbSNP's alignments,\ they often are informative when UCSC has annotated an unusual condition.\
\\ Non-repetitive genomic sequence is shown in upper case like the flanking \ sequence, and a "|" indicates each match between genomic and flanking bases.\ Repetitive genomic sequence (annotated by RepeatMasker and/or the\ Tandem Repeats Finder with period <= 12) is shown in lower case, and matching\ bases are indicated by a "+".\
\ \Data Sources and Methods
\ \\ The data that comprise this track were extracted from database dump files \ and headers of fasta files downloaded from NCBI. \ The database dump files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/database/\ (for human, organism_tax_id = human_9606;\ for mouse, organism_tax_id = mouse_10090).\ The fasta files were downloaded from \ ftp://ftp.ncbi.nih.gov/snp/organisms/\ organism_tax_id/rs_fasta/\
\- \
- Coordinates, orientation, location type and dbSNP reference allele data\ were obtained from files like b138_SNPContigLoc.bcp.gz and \ b138_ContigInfo.bcp.gz. \
- b138_SNPMapInfo.bcp.gz provides the alignment weights.\
- Functional classification was obtained from files like \ b138_SNPContigLocusId.bcp.gz. The internal database representation\ uses dbSNP's function terms, but for display in SNP details pages,\ these are translated into\ Sequence Ontology terms. \
- Validation status and heterozygosity were obtained from SNP.bcp.gz. \
- SNPAlleleFreq.bcp.gz and ../shared/Allele.bcp.gz provided allele frequencies.\ For the human assembly, allele frequencies were also taken from\ SNPAlleleFreq_TGP.bcp.gz . \
- Submitter handles were extracted from Batch.bcp.gz, SubSNP.bcp.gz and \ SNPSubSNPLink.bcp.gz. \
- SNP_bitfield.bcp.gz provided miscellaneous properties annotated by dbSNP,\ such as clinically-associated. See the document \ dbSNP_BitField_v5.pdf for details. \
- The header lines in the rs_fasta files were used for molecule type,\ class and observed polymorphism. \
Data Access
\\ Note: It is not recommeneded to use LiftOver to convert SNPs between assemblies,\ and more information about how to convert SNPs between assemblies can be found on the following\ FAQ entry.
\\ The raw data can be explored interactively with the \ Table Browser,\ Data Integrator, or \ Variant Annotation Integrator.\ For automated analysis, the genome annotation files can be downloaded in their entirety for \ hg38,\ hg19, \ and mm10 as\ (snp*.txt.gz). \ You can also make queries using the UCSC Genome Browser \ JSON API or \ public MySQL server. Please refer to our \ mailing list archives\ for questions and example queries, or our \ Data Access FAQ for more information.\
\ \Orthologous Alleles (human assemblies only)
\\ For the human assembly, we provide a related table that contains\ orthologous alleles in the chimpanzee, orangutan and rhesus macaque\ reference genome assemblies. \ We use our liftOver utility to identify the orthologous alleles. \ The candidate human SNPs are a filtered list that meet the criteria:\
- \
- class = 'single' \
- mapped position in the human reference genome is one base long \
- aligned to only one location in the human reference genome \
- not aligned to a chrN_random chrom \
- biallelic (not tri- or quad-allelic) \
Masked FASTA Files (human assemblies only)
\ \ FASTA files that have been modified to use \ IUPAC\ ambiguous nucleotide characters at\ each base covered by a single-base substitution are available for download in the\ genome's snp*Mask folder.\ Note that only single-base substitutions (no insertions or deletions) were used\ to mask the sequence, and these were filtered to exlcude problematic SNPs.\ \References
\\
Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, Smigielski EM, Sirotkin K. \
dbSNP: the NCBI database of genetic variation.\
Nucleic Acids Res. 2001 Jan 1;29(1):308-11.\
PMID: 11125122; PMC:
Description
\ \\ This track displays common structural variants (SVs) from\ nstd186\ (NCBI Curated Common Structural Variants), divided into subtracks by source study and by\ population.\
\ \\ nstd186 is a curated collection of structural variants in\ dbVar from studies with at least\ 100 samples, that include allele frequency data, and that have an allele frequency of >=0.01\ in at least one population. It includes copy number gains and losses, copy number variations,\ duplications, deletions, insertions, and mobile element variants (ALU, LINE1, SVA, HERV).\
\ \\ The dataset aggregates variants from six source studies:\
\- \
- gnomAD Structural Variants\ (nstd166):\ SVs from the sequencing of 10,847 unrelated individuals in the gnomAD v2.1 release. \
- 1000 Genomes Consortium Phase 3 Integrated SV\ (estd219):\ SVs from the 1000 Genomes Project Phase 3. \
- DECIPHER Consensus CNVs\ (nstd183):\ Consensus common population CNVs from high-resolution control sets. \
- Lee et al. 2020\ (nstd194). \
- Abel et al. 2020\ (nstd200). \
- Byrska-Bishop et al. 2022\ (nstd206):\ High-coverage whole-genome sequencing of the expanded 1000 Genomes sample set. \
\ For the latest nstd186 variant call counts and version history, see the\ nstd186\ summary page at NCBI.\
\ \Subtracks
\ \\ Per-source-study subtracks (variants from nstd186 attributed to one of the six component\ studies):\
\- \
- dbVar Curated gnomAD SVs \
- dbVar Curated 1000 Genomes SVs \
- dbVar Curated DECIPHER SVs \
- dbVar Curated Lee SVs \
- dbVar Curated Abel SVs \
- dbVar Curated Byrska-Bishop SVs \
\ Per-population subtracks (variants with AF >= 0.01 aggregated across nstd186 source\ studies for each super-population):\
\- \
- dbVar Curated All Populations (Global) \
- dbVar Curated African SVs \
- dbVar Curated American SVs \
- dbVar Curated East Asian SVs \
- dbVar Curated European SVs \
- dbVar Curated South Asian SVs \
- dbVar Curated Other Pop SVs — samples of mixed, admixed, or\ uncategorized ancestry that do not map cleanly onto the five super-populations above. \
\ The NCBI dbVar\ Track Hub additionally provides population-only variants (variants common in one\ population but not in any other): African only, American only, East Asian only, European only,\ and South Asian only. These are not loaded as native Genome Browser tracks; connect to the hub to\ view them.\
\ \Display Conventions and Configuration
\ \\ Items in all subtracks follow the same conventions. Variants are colored by type, using the dbVar\ color scheme described in the\ dbVar Overview\ page:\
\| Color | \Variant Type(s) | \
|---|---|
| copy number loss, deletion (including mobile element deletions) | |
| copy number gain, duplication, insertion (including mobile element insertions) | |
| copy number variation |
\ Mouseover on items shows genes affected, size, variant type, allele count (AC), allele\ number (AN), allele frequency (AF), and population (in per-population subtracks).\
\ \\ Subtracks can be filtered by:\
\- \
- Variant Type \
- Variant Size (Under 10KB, 10KB to 100KB, 100KB to 1MB, Over 1MB) \
- Frequency Range (Under 0.02, 0.02 to 0.05, 0.05 to 0.1, 0.1 to 0.2, 0.2 to 0.5,\ Over 0.5) \
\ The Hide empty subtracks option on the track configuration page hides subtracks that have\ no data in the current viewing window. This is enabled by default and can be toggled off.\
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API.\
\\ The data can also be found directly at the\ dbVar\ nstd186 data access page, or in the\ dbVar\ Track Hub. For questions about dbVar track data, please contact\ dbvar@ncbi.nlm.nih.gov.\ \
\ \Credits
\\ Thanks to the dbVar team at NCBI, especially John Lopez and Timothy Hefferon for technical\ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter, of\ the Genome Browser team for engineering the track display.\
\ \References
\\ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291;\ PMC: PMC3531204\
\ varRep 1 compositeTrack on\ filterLabel.freq_range Frequency Range\ filterLabel.length Variant Size\ filterLabel.type Variant Type\ filterValues.freq_range Under 0.02,0.02 to 0.05,0.05 to 0.1,0.1 to 0.2,0.2 to 0.5,Over 0.5\ filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB\ filterValues.type alu deletion,alu insertion,copy number gain,copy number loss,copy number variation,deletion,duplication,herv deletion,insertion,line1 deletion,line1 insertion,mobile element deletion,mobile element insertion,sva deletion,sva insertion\ hideEmptySubtracks on\ html dbVarCommon\ itemRgb on\ longLabel NCBI dbVar Curated Common Structural Variants\ mouseOverField label\ searchIndex name\ shortLabel dbVar Common SV\ superTrack dbVarSv pack\ track dbVar_common\ type bigBed 9 + .\ visibility pack\ dbVar_conflict dbVar Conflict SV bigBed 9 + . NCBI dbVar Curated Conflict Variants 3 100 0 0 0 127 127 127 0 0 0Description
\\ The track NCBI dbVar Curated Common SVs: Conflicts with Pathogenic highlights loci where\ common copy number variants from\ nstd186 (NCBI Curated\ Common Structural Variants) overlap with structural variants with clinical assertions,\ submitted to ClinVar by external labs (Clinical Structural\ Variants - nstd102).\
\ \\ Overlap in the track refers to reciprocal overlap between variants in the common\ (NCBI Curated Common Structural Variants) versus clinical (ClinVar CNVs)\ tracks. Reciprocal overlap values can be anywhere from 10% to 100%.\
\ \\ For more information on the number of variant calls and latest statistics for nstd186 see\ Summary of nstd186\ (NCBI Curated Common Structural Variants).\
\ \Display Conventions and Configuration
\ \\ Items in this track follow the same conventions as the parent Common SV track: items are colored\ by variant type, based on the dbVar colors described in the\ dbVar Overview page.\ The variant types present in this track are copy number gain, copy number loss, copy number\ variation, deletion, and duplication.\
\| Color | \Variant Type(s) | \
|---|---|
| copy number loss, deletion | |
| copy number gain, duplication | |
| copy number variation |
\ Mouseover on items indicates genes affected, size, variant type, and allele frequencies (AF). \ All tracks can be filtered according to the variant length, variant type and \ variant overlap. The overlap filter defines five bins within that range (10-25,\ 25-50, 50-75, 75-90, 90-100 percent reciprocal overlap; intervals are inclusive of the upper bound).\
\ \ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API.\
\ \\ The data can also be found directly from the dbVar \ nstd186 data access, as well as in the\ \ dbVar Track Hub, where additional subtracks are included. For questions about\ dbVar track data, please contact\ dbvar@ncbi.nlm.nih.gov.\ \
\ \Credits
\\ Thanks to the dbVar team at NCBI, especially John Lopez and Timothy Hefferon for technical\ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of\ the Genome Browser team for engineering the track display.\
\ \References
\\
Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\
Zhou G et al.\
\
DbVar and DGVa: public archives for genomic structural variation.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\
PMID: 23193291; PMC:
Description
\\ This track displays structural variants (SVs) in\ dbVar that are not classified as\ common, somatic, or clinical. The track is defined by exclusion: it contains dbVar SVs minus\
\- \
- common variants (covered by the dbVar Common SV\ track) \
- variants with somatic origin (covered by the\ dbVar Somatic SV track) \
- clinical variants from ClinVar (covered by the\ ClinVar track) \
- variants of the types: short tandem repeat, interchromosomal translocation, intrachromosomal\ translocation \
- variants from a set of legacy or obsoleted dbVar studies (nstd45, nstd75, nstd90, estd59,\ estd199, estd214) \
- variants discovered using low-confidence methods (BAC aCGH, FISH, Karyotyping, MassSpec,\ Microsatellite genotyping, Multiple complete digestion, Not provided, ROMA, Southern, Western) \
\ NCBI sometimes refers to this category as presumed normal SVs in their hub documentation\ and source files. We use the term Other here to avoid implying that the variants are\ clinically normal — the track is purely a residual bucket of dbVar SVs that don't fit the\ other three composites.\
\ \\ This track is updated with every monthly dbVar release.\
\ \Subtracks
\\ The Other SVs are split into two subtracks:\
\- \
- dbVar Healthy SVs: SVs in dbVar with no reported phenotype. \
- dbVar Phenotype SVs: SVs in dbVar with a reported phenotype, excluding clinical\ and somatic variants. \
\ The Healthy subtrack is considerably larger than the Phenotype subtrack. Turning on\ Hide empty subtracks (default) limits the display to subtracks with data in the current\ viewing window.\
\ \Display Conventions and Configuration
\\ Variants are colored by type, using the dbVar color scheme described in the\ dbVar Overview\ page:\
\| Color | \Variant Type(s) | \
|---|---|
| deletion, delins, copy number loss | |
| duplication, copy number gain, insertion | |
| copy number variation | |
| inversion | |
| complex substitution | |
| tandem duplication | |
| sequence alteration |
\ Mouseover on items shows gene(s) affected, size, variant type, dbVar study of origin,\ discovery method, phenotype (in the Phenotype subtrack), and population code (if available).\
\ \\ Subtracks can be filtered by:\
\- \
- Variant Type \
- Variant Size (Under 10KB, 10KB to 100KB, 100KB to 1MB, Over 1MB) \
- Discovery Method (Curated, Merging, Multiple, Oligo aCGH, Optical mapping, SNP array,\ Sequencing, other) \
- Pathogenic Reciprocal Overlap (none, 10 to 25, 25 to 50, 50 to 75, 75 to 90, 90 to 100)\ — range of reciprocal overlap with pathogenic variants in nstd102 \
- Population Code (AFR, AMR, EAS, EUR, OTH, SAS, mixed, multiple, none, unknown) \
Methods
\\
Per NCBI's dbVar processing pipeline, variant calls are extracted from the\
variant_calls.gvf files on the dbVar FTP site, reciprocally overlapped with the\
pathogenic clinical SV file using bedtools, filtered by the exclusion criteria described above,\
and converted to bigBed format. See the\
dbVar\
Overview for full methods.\
Data Access
\\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. Due to the size of the Healthy subtrack (over\ 5 million items), Table Browser queries on large regions may be slow — narrow by\ chromosome or region where possible.\
\\ The data can also be downloaded from the\ dbVar Track Hub.\ For questions about dbVar track data, please contact\ dbvar@ncbi.nlm.nih.gov.\ \
\ \Credits
\\ Thanks to the dbVar team at NCBI, especially John Lopez and Timothy Hefferon for technical\ coordination and consultation.\
\ \References
\\ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291;\ PMC: PMC3531204\
\ varRep 1 compositeTrack on\ filterLabel.length Variant Size\ filterLabel.method Discovery Method\ filterLabel.overlap Pathogenic Reciprocal Overlap\ filterLabel.population Population Code\ filterLabel.type Variant Type\ filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB\ filterValues.method Curated,Merging,Multiple,Oligo aCGH,Optical mapping,SNP array,Sequencing,other\ filterValues.overlap none,10 to 25,25 to 50,50 to 75,75 to 90,90 to 100\ filterValues.population AFR,AMR,EAS,EUR,OTH,SAS,mixed,multiple,none,unknown\ filterValues.type alu deletion,alu insertion,complex substitution,copy-neutral loss of heterozygosity,copy number gain,copy number loss,copy number variation,deletion,delins,duplication,herv deletion,herv insertion,insertion,inversion,line1 deletion,line1 insertion,mobile element deletion,mobile element insertion,novel sequence insertion,sequence alteration,sva deletion,sva insertion,tandem duplication\ hideEmptySubtracks on\ html dbVarOther\ itemRgb on\ longLabel NCBI dbVar Other Structural Variants\ mouseOverField label\ searchIndex name\ shortLabel dbVar Other SV\ superTrack dbVarSv\ track dbVar_other\ type bigBed 9 + .\ visibility hide\ dbVar_somatic dbVar Somatic SV bigBed 9 + . NCBI dbVar Somatic Structural Variants 0 100 0 0 0 127 127 127 0 0 0Description
\\ This track displays structural variants (SVs) in\ dbVar with somatic origin,\ aggregated from six dbVar studies.\
\ \\ Source studies:\
\- \
- COSMIC\ (estd192) —\ the Catalogue Of Somatic Mutations In Cancer. \
- Clinical Structural Variants\ (nstd102) —\ somatic subset of ClinVar SVs. \
- Ghazali et al. 2021\ (nstd202). \
- Helman et al. 2014\ (nstd94). \
- Walter et al. 2009\ (nstd11). \
- Wills et al. 2016\ (nstd125). \
\ This track is updated with every monthly dbVar release.\
\ \Display Conventions and Configuration
\\ Variants are colored by type, using the dbVar color scheme described in the\ dbVar Overview\ page:\
\| Color | \Variant Type(s) | \
|---|---|
| deletion, copy number loss | |
| duplication, copy number gain, insertion, mobile element insertion | |
| inversion | |
| complex substitution | |
| tandem duplication |
\ Mouseover on items shows gene(s) affected, size, variant type, source dbVar study, and\ discovery method.\
\ \\ The track can be filtered by:\
\- \
- Variant Type \
- Variant Size (Under 10KB, 10KB to 100KB, 100KB to 1MB, Over 1MB) \
- Discovery Method (Curated, Multiple, SNP array, Sequencing) \
- Pathogenic Reciprocal Overlap (none, 10 to 25, 25 to 50, 50 to 75, 75 to 90, 90 to 100)\ — range of reciprocal overlap with pathogenic variants in nstd102 \
Methods
\\
Per NCBI's dbVar processing pipeline, somatic variant calls are extracted from the\
variant_calls.somatic.gvf files on the dbVar FTP site, reciprocally overlapped\
with the pathogenic clinical SV file using bedtools, and converted to bigBed format. See the\
dbVar\
Overview for full methods.\
Data Access
\\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API.\
\\ The data can also be downloaded from the\ dbVar Track Hub,\ or via the dbVar FTP in VCF, GVF, or tab-delimited formats. For questions about dbVar track data,\ please contact\ dbvar@ncbi.nlm.nih.gov.\ \
\ \Credits
\\ Thanks to the dbVar team at NCBI, especially John Lopez and Timothy Hefferon for technical\ coordination and consultation.\
\ \References
\\ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291;\ PMC: PMC3531204\
\\ Tate JG, Bamford S, Jubb HC, Sondka Z, Beare DM, Bindal N, Boutselakis H, Cole CG, Creatore C,\ Dawson E et al.\ \ COSMIC: the Catalogue Of Somatic Mutations In Cancer.\ Nucleic Acids Res. 2019 Jan 8;47(D1):D941-D947.\ PMID: 30371878;\ PMC: PMC6323903\
\ varRep 1 compositeTrack on\ filterLabel.length Variant Size\ filterLabel.method Discovery Method\ filterLabel.overlap Pathogenic Reciprocal Overlap\ filterLabel.type Variant Type\ filterValues.length Under 10KB,10KB to 100KB,100KB to 1MB,Over 1MB\ filterValues.method Curated,Multiple,SNP array,Sequencing\ filterValues.overlap none,10 to 25,25 to 50,50 to 75,75 to 90,90 to 100\ filterValues.type complex substitution,copy number gain,copy number loss,copy-neutral loss of heterozygosity,deletion,duplication,insertion,inversion,mobile element insertion,tandem duplication\ html dbVarSomatic\ itemRgb on\ longLabel NCBI dbVar Somatic Structural Variants\ mouseOverField label\ searchIndex name\ shortLabel dbVar Somatic SV\ superTrack dbVarSv\ track dbVar_somatic\ type bigBed 9 + .\ visibility hide\ dbVarSv dbVar Struct Var NCBI dbVar Structural Variants 0 100 0 0 0 127 127 127 0 0 0Description
\\ This super-track groups structural variant (SV) tracks from\ dbVar, NCBI's archive of human\ genomic structural variation. The data are mirrored from the\ NCBI dbVar track\ hub.\
\ \\ There are four track collections in this super-track:\
\- \
- NCBI dbVar Curated Common Structural Variants\ (dbVar Common SV): Copy-number and other variants from the\ nstd186 study\ (NCBI Curated Common Structural Variants), split into subtracks by source study and by population. \
- NCBI dbVar Curated Conflict Variants\ (dbVar Conflict SV): Variants from nstd186 that overlap clinical variants in\ nstd102\ (Clinical Structural Variants). \
- NCBI dbVar Somatic Structural Variants\ (dbVar Somatic SV): SVs with somatic origin, aggregated across six dbVar studies\ including COSMIC. \
- NCBI dbVar Other Structural Variants\ (dbVar Other SV): SVs in dbVar with no reported phenotype, or with phenotype but not\ clinical/somatic, excluding variants already present in the Common and Somatic tracks or in ClinVar.\ NCBI sometimes refers to this category as presumed normal SVs. \
\ Clinical structural variants from dbVar study nstd102 are not duplicated here; they are available\ in our dedicated ClinVar track (subtrack\ ClinVar CNVs), which pulls from the same underlying ClinVar XML release.\
\ \Source Studies in nstd186 (Common SV)
\\ nstd186 is a\ curated collection of SVs from studies with at least 100 samples and allele frequency >= 0.01\ in at least one population. It aggregates data from six source studies:\
\- \
- 1000 Genomes Consortium Phase 3 Integrated SV\ (estd219),\ added 2016 \
- gnomAD Structural Variants\ (nstd166),\ added 2019 — SVs from the sequencing of 10,847 unrelated individuals (gnomAD v2.1) \
- DECIPHER Consensus CNVs\ (nstd183),\ added 2020 \
- Lee et al. 2020\ (nstd194),\ added 2021 \
- Abel et al. 2020\ (nstd200),\ added 2021 \
- Byrska-Bishop et al. 2022\ (nstd206),\ added 2022 — high-coverage WGS of the expanded 1000 Genomes sample set \
\ Variants must be of a qualifying structural variant type (deletions, duplications, insertions,\ copy number variants, and mobile element variants). For the latest statistics and version\ history, see the\ nstd186 summary\ page at NCBI.\
\ \Display Conventions
\\ These tracks are composite tracks that contain multiple subtracks. Each subtrack has its own\ display controls, as described here. Items are\ colored by variant type using the dbVar color scheme\ (dbVar Overview):\
\| Color | \Variant Type(s) | \
|---|---|
| deletion, copy number loss | |
| duplication, copy number gain, insertion | |
| copy number variation |
\ Some composites display additional colors for less common variant types. Refer to each composite\ track's description page for the full legend.\
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser, or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API.\
\\ The data can also be found directly at the\ dbVar\ nstd186 data access page, or in the\ dbVar\ Track Hub, where additional subtracks (e.g., population-exclusive variants, ClinVar SVs) are\ available. For questions about dbVar track data, please contact\ dbvar@ncbi.nlm.nih.gov.\ \
\ \Credits
\\ Thanks to the dbVar team at NCBI, especially John Lopez and Timothy Hefferon for technical\ coordination and consultation, and to Christopher Lee, Anna Benet-Pages, and Daniel Schmelter of\ the Genome Browser team for engineering the track display.\
\ \References
\\ Lappalainen I, Lopez J, Skipper L, Hefferon T, Spalding JD, Garner J, Chen C, Maguire M, Corbett M,\ Zhou G et al.\ \ DbVar and DGVa: public archives for genomic structural variation.\ Nucleic Acids Res. 2013 Jan;41(Database issue):D936-41.\ PMID: 23193291;\ PMC: PMC3531204\
\ varRep 0 dataVersion /gbdb/$D/bbi/dbVar/version.txt\ group varRep\ html dbVarCurated\ longLabel NCBI dbVar Structural Variants\ shortLabel dbVar Struct Var\ superTrack on\ track dbVarSv\ decipherContainer DECIPHER DECIPHER 0 100 0 0 0 127 127 127 0 0 0Description
\ \\
\
\
NOTE:
\
While the DECIPHER database is \
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions.\
Because the UCSC Genes mappings for CNVs are based on associations from\ RefSeq and UniProt, they are dependent on any interpretations from those\ sources. Furthermore, because many DECIPHER records refer to multiple gene\ names, or syndromes not tightly mapped to individual genes, the associations\ in this track should be treated with skepticism and any conclusions\ based on them should be carefully scrutinized using independent\ resources.\
\Data Display Agreement Notice
\
The CNV/SNV data are only available for display in the Browser, and not for bulk\
download. Access to bulk data may be obtained directly from DECIPHER\
(https://www.deciphergenomics.org/about/data-sharing) and is subject to a\
Data Access Agreement, in which the user certifies that no attempt to\
identify individual patients will be undertaken. The same restrictions\
apply to the public data displayed at UCSC in the UCSC Genome Browser;\
no one is authorized to attempt to identify patients by any means.\
These data are made available as soon as possible and may be a\ pre-publication release. For information on the proper use of DECIPHER\ data, please see https://www.deciphergenomics.org/about/data-sharing.\
\The DECIPHER consortium provides these data in good faith as a research\ tool, but without verifying the accuracy, clinical validity, or utility of\ the data. The DECIPHER consortium makes no warranty, express or implied,\ nor assumes any legal liability or responsibility for any purpose for\ which the data are used.\
\\ The \ DECIPHER\ database of submicroscopic chromosomal imbalance \ collects clinical information about chromosomal \ microdeletions/duplications/insertions, translocations and inversions, \ and displays this information on the human genome map.\
\ The CNVs and SNVs tracks show genomic regions of reported cases and their \ associated phenotype information. All data have passed the strict\ consent requirements of the DECIPHER project and are approved for\ unrestricted public release. Clicking the Patient View ID link\ brings up a more detailed informational page on the patient at the \ DECIPHER web site.
\ \\ The Population CNVs track shows common copy-number variants (CNVs) and their\ population frequencies, lifted over from the hg19 assembly.
\ \Display Conventions and Configuration
\\ The genomic locations of DECIPHER variants are labeled with the DECIPHER variant descriptions. \ Mouseover on items shows variant details, clinical interpretation, and associated conditions. \ Further information on each variant is displayed on the details page by a click onto any variant. \
\ \\ For the CNVs track, the entries are colored by the type of variant:\
- \
- red for loss \
- blue for gain \
- grey for amplification \
\ A light-to-dark color gradient indicates the clinical significance of each variant, with \ the lightest shade being benign, to the darkest shade being pathogenic. Detailed information on the \ CNV color code is described here.\ Items can be filtered according to the size of the variant, variant type, and clinical significance \ using the track Configure options.\
\ \\ For the SNVs track, the entries are colored according to the estimated clinical significance \ of the variant:\
- \
- black for likely or definitely pathogenic \
- dark grey for uncertain or unknown \
- light grey for likely or definitely benign \
\ For the Population CNVs track, genomic variants are visually differentiated to facilitate quick and\ clear identification. Variants are colored according to their clinical significance and type:\
\- \
- Red - exclusively deletion site. (deletions) \
- Blue - exclusively duplication site. (duplication) \
- Grey - deletions and duplications site. (del/dup) \
\ The Population CNVs track's mouseover tooltip provides the following information\ about the data:\
\- \
- Position: Specifies the chromosomal range of the CNV. \
- Type of CNV: Indicates if the variation is a loss, gain, or\ deletions/duplications(del/dup). \
- Frequency of CNV: Reflects how often the CNV occurs in the sampled\ population. \
- Number of Observations: The count of times this CNV was observed in the\ dataset. \
- Sample Size of Study: The total number of samples examined. \
Method
\\ Data provided by the DECIPHER project group are imported and processed\ to create a simple BED track to annotate the genomic regions associated\ with individual patients.\
\ \ \Contact
\\ For more information on DECIPHER, please contact\ \ contact@deciphergenomics.\ org\
\ \Data Access
\\ The DECIPHER data access and documentation can be found at\ DECIPHER Downloads.\
\ \References
\\
Firth HV, Richards SM, Bevan AP, Clayton S, Corpas M, Rajan D, Van Vooren S, Moreau Y, Pettett RM,\
Carter NP.\
\
DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.\
Am J Hum Genet. 2009 Apr;84(4):524-33.\
PMID: 19344873; PMC:
Description
\\ This track shows high-confidence structural variants (SVs) identified by\ Oxford Nanopore long-read sequencing of 3,622 Icelanders recruited through\ the deCODE genetics population cohort. The track contains 119,453 high-confidence\ SVs (41,216 deletions, 75,050 insertions and 3,187 combined insertion/deletion\ events), deduplicated from a 133,886-record upstream release. Variants are\ site-level (no per-sample genotypes) and have been\ filtered to a high-confidence subset validated in the accompanying\ population-scale analysis.\
\\ Note that this release does not include allele counts or allele frequencies:\ each row represents a site that was called with high confidence in the\ cohort, but the number of carrier samples is not provided, so the track\ cannot be filtered by AF/AC.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Combined insertion/deletion (INSDEL) - purple \
\ Insertions are placed at the insertion site with a width of 1 bp; deletions\ span the deleted interval; INSDEL events span the affected reference region\ and have SVLEN=0 because the reference and alternate alleles differ in both\ sequence and length. Filters are available for SV type and SV length.\
\\ Where a variant falls inside an annotated tandem-repeat region, the detail\ page also shows the coordinates of that region (TRRBEGIN / TRREND from the\ source VCF), which can be useful context for repeat-mediated insertions and\ deletions.\
\ \Methods
\\ Beyter et al. 2021 performed Oxford Nanopore long-read sequencing of 3,622\ Icelanders recruited through deCODE genetics and detected a median of\ 22,636 SVs per individual (13,353 insertions and 9,474 deletions). Across\ the cohort they derived a set of 133,886 reliably genotyped SV alleles,\ imputed those alleles into 166,281 chip-typed Icelanders, and tested them\ for association with disease and quantitative traits (notably including a\ rare PCSK9 deletion associated with lower LDL-cholesterol and a\ multi-allelic 57-bp VNTR in ACAN associated with adult height). The\ track shown here displays 119,453 unique high-confidence SV sites (exact-duplicate\ records present in the release have been collapsed): 41,216 deletions, 75,050\ insertions and 3,187 combined insertion/deletion events.\ The release is site-only (no per-sample genotypes or allele frequencies),\ so the track cannot be filtered by AF/AC.\
\\ The VCF ont_sv_high_confidence_SVs.sorted.vcf.gz was downloaded\ from the deCODE genetics\ \ LRS_SV_sets GitHub repository.\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator and exported from there\ to spreadsheet or tab-sep tables. From scripts, the data can be accessed\ through our API, track=decodeSv.\
\\ The annotation is stored as a bigBed file that can be downloaded from\ our\ download server as decodeSv.bb. Individual regions or the whole\ annotation can be obtained with the bigBedToBed utility, available\ from our\ utilities\ page. Example:\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/decodeSv.bb -chrom=chr21 -start=0 -end=100000000 stdout.\
\\ The original VCF is available from the deCODE genetics\ LRS_SV_sets\ GitHub repository.\
\ \Credits
\\ Thanks to the deCODE genetics team and the Icelandic study participants for\ making this dataset publicly available.\
\ \References
\ \ \\ Beyter D, Ingimundardottir H, Oddsson A, Eggertsson HP, Bjornsson E, Jonsson H, Atlason BA,\ Kristmundsdottir S, Mehringer S, Hardarson MT et al.\ \ Long-read sequencing of 3,622 Icelanders provides insight into the role of structural variants in\ human diseases and other traits.\ Nat Genet. 2021 Jun;53(6):779-786.\ PMID: 33972781\
\ \ varRep 1 bigDataUrl /gbdb/hg38/lrSv/decodeSv.bb\ filter.insLen 0:22130\ filter.svLen 0:861080\ filterByRange.insLen on\ filterByRange.svLen on\ filterLabel.insLen Insertion Length\ filterLabel.svLen SV Length\ filterLabel.svType SV Type\ filterType.svType multipleListOr\ filterValues.svType DEL,INS,INSDEL\ itemRgb on\ longLabel High-confidence Structural Variants from 3,622 Icelanders (deCODE, Oxford Nanopore)\ mouseOver Var: $name ($svType)SV len: $svLen
Ins len: $insLen\ parent longReadVariants\ shortLabel deCODE 3622 SVs\ skipEmptyFields on\ track decodeSv\ type bigBed 9 +\ visibility hide\ predictionScoresSuper Deleteriousness Predictions Variant Deleteriousness / Variant Impact Prediction Scores 0 100 0 0 0 127 127 127 0 0 0
Description
\ \\ The "Prediction Scores" container track contains subtracks showing the results of variant impact prediction\ scores. Usually these are prediction algorithms that use protein features, conservation, nucleotide composition and similar\ signals to determine if a genome variant is pathogenic or not.
\ \BayesDel - Only hg19
\BayesDel is a deleteriousness meta-score for coding and \ non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.
\\ MaxAF stands for maximum allele frequency. The old ACMG (American College of Medical Genetics and\ Genomics) rules utilize allele frequency to classify variants, so the "BayesDel without MaxAF"\ tracks were created to avoid double-dipping. However, new ACMG rules will not include allele\ frequency, so it is okay to use the "BayesDel with MaxAF" for variant classification in the future.\ For gene discovery research, it is better to use BayesDel with MaxAF.
\\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).
\\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\
\ \M-CAP - Only hg19
\\ Interpretation: The authors define that at an M-CAP score > 0.025, 5% of \ pathogenic variants are misclassified as benign. 0.025 is the recommended cutoff.\
\ \\ The Mendelian Clinically Applicable Pathogenicity (M-CAP)\ score (Jagadeesh et al, Nat Genetics 2016) is a\ pathogenicity likelihood score that aims to misclassify no more than 5% of\ pathogenic variants while aggressively reducing the list of variants of\ uncertain significance. Much like allele frequency, M-CAP is readily\ interpreted; if it classifies a variant as benign, then that variant can be\ trusted to be benign with high confidence.
\ \\ At an M-CAP score > 0.025, 5% of pathogenic variants are misclassified as benign.\ The score varies from 0.0 - 1.0, following a geometric distribution with a mean of 0.09.\
\ \MutScore - hg38/hg19
\\ Interpretation: The authors defined the thresholds <0.140 for a variant\ to be benign, and > 0.730 for pathogenic with 95% confidence.
\\ The within-gene clustering of pathogenic and benign DNA changes is an important\ feature of the human exome.\ MutScore\ score (Quinodoz, AJHG 2022) integrates qualitative features of\ DNA substitutions with new additional information derived from \ positional clustering. Variants of unknown significance that are scored\ as benign by other algorithms but located close to known pathogenic variants\ should be weighted more pathogenic by MutScore. The score ranges from 0.0-1.0, resembles\ a negative binomial distribution with a maximum ~0.05, depending on the nucleotide.\ MutScore was seen to outperform other scores by papers Porretta et al and Brock et al.\
\ \PrimateAI-3D - hg38/hg19
\\ Interpretation: Scores range from 0 to 1, with higher values indicating greater\ predicted pathogenicity. The authors suggest a clinical threshold of 0.821 for distinguishing\ pathogenic from benign missense variants. 75% of all possible missense variants are classified\ as benign, 25% as pathogenic.\
\\ PrimateAI-3D\ (Gao et al, Science 2023) is a semi-supervised 3D convolutional neural network trained on\ 4.5 million benign missense variants from 233 primate species and common human variants.\ It operates on voxelized protein structures at 2 Å resolution (from AlphaFold or\ homology models) combined with multiple sequence alignments from 592 species. The track\ contains pre-computed scores for all 70.7 million possible single nucleotide missense\ variants.\ Pathogenic variants are shown in red,\ benign in blue.\ Items can be filtered by prediction and by percentile score.\
\ \PromoterAI - hg38
\\ Interpretation: Scores range from -1 to 1. Positive scores indicate predicted\ disruption of promoter function, negative scores indicate the variant is tolerated.\
\\ PromoterAI\ predicts the impact of single nucleotide variants in gene\ promoter regions, scoring all possible substitutions within 500 bp of annotated\ transcription start sites. The track contains four bigWig subtracks (one per alternate\ allele) covering 39.5 million positions, plus a bigBed track for the 3.8% of positions\ where overlapping transcripts produce different scores.\
\ \ClinPred - hg38/hg19
\\ Interpretation: Scores range from 0 to 1, with higher values indicating greater\ predicted likelihood of pathogenicity. The authors recommend a threshold of ≥ 0.5 to\ flag variants as likely disease-relevant.\
\\ ClinPred\ (Alirezaie et al, AJHG 2018) is a machine-learning predictor for nonsynonymous\ (missense) single-nucleotide variants. It combines existing pathogenicity scores\ with population allele frequency from gnomAD, and was trained on confidently\ annotated disease-causing and benign variants from ClinVar. The track contains\ four bigWig subtracks (one per alternate allele) with pre-computed scores for\ all possible human missense variants in the exome.\ Pathogenic variants are shown in red,\ benign in blue.\
\ \EVE - hg38
\\ Interpretation: EVE scores range from 0 (benign) to 1 (pathogenic) and are\ normalized within each protein, so they are not directly comparable across proteins. A\ Class25 label assigns each variant to benign, uncertain, or pathogenic using a 25%\ uncertainty threshold.\
\\ EVE\ (Frazer et al, Nature 2021) is a deep generative model (a Bayesian variational\ autoencoder) trained per protein on evolutionary sequence alignments, without using\ clinical labels. The track shows scores for all possible missense substitutions in\ 2,949 disease-associated proteins as a heatmap (rows = amino acids, columns = protein\ positions), colored from benign (blue) through\ uncertain (white) to pathogenic (red).\
\ \popEVE - hg38
\\ Interpretation: popEVE scores are a continuous, proteome-wide measure of\ deleteriousness and, unlike most missense scores, are calibrated to be comparable across\ genes; lower (more negative) scores are more deleterious. The authors define a\ high-confidence severe threshold at −5.056 and a moderate threshold at −4.617.\
\\ popEVE\ (Orenbuch et al, Nature Genetics 2025) builds on EVE and the ESM-1v protein language model,\ calibrating their scores against human population variation (UK Biobank) with a Gaussian\ process to place variants across the whole proteome on a single scale. The track shows\ scores for all single-nucleotide-reachable missense substitutions across roughly 18,000\ proteins as a heatmap, colored on a global gradient from\ deleterious (red) to\ tolerated (blue).\
\ \Display Conventions and Configuration
\ \BayesDel
\There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.
\ \For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.
\ \Note: There are cases in which a genomic position will have one value missing.\
\ \When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\
\ \\
Details on suggested ranges for BayesDel can be found in Bergquist et al Genet Med 2025, Table 2:\
\
M-CAP and MutScore
\There are four subtracks: one for each nucleotide.
\ \ClinPred
\There are four subtracks: one for each alternate nucleotide. Each shows the\ ClinPred score for variants from the reference base to that nucleotide. Reference\ and synonymous alternates are set to 0; positions with no exome coverage appear as\ gaps. The track is colored at each position by the recommended threshold\ (≥ 0.5 = pathogenic, < 0.5 = benign).
\ \PrimateAI-3D
\A single bigBed track containing all possible missense variants. Items are\ colored by prediction (red = pathogenic, blue = benign) and can be filtered by\ prediction or percentile score. See the per-track description page for details.
\ \PromoterAI
\Four bigWig subtracks (one per alternate nucleotide) covering positions within\ 500 bp of annotated transcription start sites, plus a bigBed track for\ positions where overlapping transcripts produce different scores.
\ \EVE and popEVE
\Each is a single bigBed track displayed as a heatmap: one column per amino acid\ position (placed at the codon's genomic coordinate) and one row per amino acid. Hover\ over a cell to see the substitution and its score. EVE is colored per protein from blue\ (benign) to red (pathogenic); popEVE uses a single global gradient (red = deleterious,\ blue = tolerated) so that cells are comparable across genes. These tracks are best viewed\ zoomed in to a single gene or exon.
\ \Data Access
\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track names can\ be found via the table browser or by clicking onto the signal tracks.\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server, there is one subdirectory per score.\ The files for this track are called usually called by their alternate allele, e.g. mcapA.bw and mutScoreA.bw. Individual\ regions or the whole genome annotation can be obtained using our tool bigWigToBedGraph\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigWigToBedGraph http://hgdownload.soe.ucsc.edu/gbdb/hg19/mcap/mcapA.bw -chrom=chr21 -start=0 -end=100000000 stdout
\ \ \The original BayesDel files are available at the\ BayesDel website.\
The other algorithms also have their own download formats, on the\ M-CAP website and the MutScore Website.\ \
Methods
\BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\
\ \M-CAP data was converted using a custom Python script and converted to\ bigWig, as documented in the our makeDoc\ text file. MutScore was already available in bigWig format to download.
\ \Credits
\Thanks to the BayesDel, MutScore, M-CAP, ClinPred, PrimateAI-3D and PromoterAI teams for\ providing precomputed data, and to Tiana Pereira, Christopher Lee, Gerardo Perez, and Anna\ Benet-Pages of the Genome Browser team.
\ \References
\\
Alirezaie N, Kernohan KD, Hartley T, Majewski J, Hocking TD.\
\
ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide Variants.\
Am J Hum Genet. 2018 Oct 4;103(4):474-483.\
PMID: 30220433; PMC:
\ Bergquist T, Stenton SL, Nadeau EAW, Byrne AB, Greenblatt MS, Harrison SM, Tavtigian SV,\ O'Donnell-Luria A, Biesecker LG, Radivojac P et al.\ \ Calibration of additional computational tools expands ClinGen recommendation options for variant\ classification with PP3/BP4 criteria.\ Genet Med. 2025 Mar 10;27(6):101402.\ PMID: 40084623\
\ \\
Feng BJ.\
\
PERCH: A Unified Framework for Disease Gene Prioritization.\
Hum Mutat. 2017 Mar;38(3):243-251.\
PMID: 27995669; PMC:
\
Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich ASD,\
Fiziev PP, Kuderna LFK et al.\
\
The landscape of tolerated genetic variation in humans and primates.\
Science. 2023 Jun 2;380(6648):eabn8197.\
PMID: 37262156; PMC:
\ Jagadeesh KA, Wenger AM, Berger MJ, Guturu H, Stenson PD, Cooper DN, Bernstein JA, Bejerano G.\ \ M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high\ sensitivity.\ Nat Genet. 2016 Dec;48(12):1581-1586.\ PMID: 27776117\
\ \\
Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\
Tavtigian SV, Greenblatt MS et al.\
\
Calibration of computational tools for missense variant pathogenicity classification and ClinGen\
recommendations for PP3/BP4 criteria.\
Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\
PMID: 36413997; PMC:
\
Quinodoz M, Peter VG, Cisarova K, Royer-Bertrand B, Stenson PD, Cooper DN, Unger S, Superti-Furga A,\
Rivolta C.\
\
Analysis of missense variants in the human genome reveals widespread gene-specific clustering and\
improves prediction of pathogenicity.\
Am J Hum Genet. 2022 Mar 3;109(3):457-470.\
PMID: 35120630; PMC:
\
Sundaram L, Gao H, Padigepati SR, McRae JF, Li Y, Kosmicki JA, Fritzilas N, Hakenberg J,\
Dutta A, Shon J et al.\
\
Predicting the clinical impact of human mutation with deep neural networks.\
Nat Genet. 2018 Aug;50(8):1161-1170.\
PMID: 30038395; PMC:
\
Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\
\
REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\
classification.\
Sci Rep. 2019 Sep 4;9(1):12752.\
PMID: 31484976; PMC:
Description
\ \\ Enrichment of large copy number variants (CNVs) has been linked to severe pediatric disease\ including developmental delay, intellectual disability and autism spectrum disorder. The\ association of individual loci with specific disorders, however, has still been problematic.\
\ \\ This track shows CNVs from cases of developmental delay along with healthy control sets from two\ separate studies. The study by Cooper et al. (2011) analyzed samples from 15,767 children\ with various developmental disabilities and compared them with samples from 8,329 adult controls to\ produce a detailed genome-wide morbidity map of developmental delay and congenital birth defects.\ The study by Coe et al. (2014) further expanded the morbidity map by analyzing 13,318 new\ case samples along with 11,255 new controls.\
\ \Display Conventions and Configuration
\ \\ This is a composite track consisting of a Case subtrack and a Control subtrack. To turn a subtrack\ on or off, toggle the checkbox to the left of the subtrack name in the track controls at the top of\ the track description page.\
\ \\ Items in this track are colored red for copy number loss and\ blue for copy number gain.\
\ \Methods
\ \\ The samples were analyzed using nine different CGH platforms with initial CNV calls filtered as\ described in Coe et al. (2014).\
\ \\ Final CNV calls were decoupled from identifying information and submitted to dbVar as\ nstd54 and\ nstd100\ for unrestricted release.\
\ \\ The 15,767 case individuals from the Cooper study comprise nstd54 sampleset 1, while the 8,329\ control individuals from the Cooper study comprise nstd54 samplesets 2-12. The 13,318 case\ individuals from the Coe study were combined with the Cooper case individuals to comprise nstd100\ sampleset 1. The 11,255 control individuals from the Coe study comprise nsdt100 samplesets 2 and 3.\
\ \\ The Case subtrack was constructed using nstd100 sampleset 1. The Control subtrack was constructed by\ combining nstd100 samplesets 2 and 3 with nstd54 samplesets 2-12.\
\ \Credits
\ \\ We would like to thank Gregory Cooper, Brad Coe and the\ Eichler Lab at the University of\ Washington for providing the data for this track.\
\ \References
\ \\
Coe BP, Witherspoon K, Rosenfeld JA, van Bon BW, Vulto-van Silfhout AT, Bosco P, Friend KL, Baker C,\
Buono S, Vissers LE et al.\
\
Refining analyses of copy number variation identifies specific genes associated with developmental\
delay.\
Nat Genet. 2014 Oct;46(10):1063-71.\
PMID: 25217958; PMC:
\
Cooper GM, Coe BP, Girirajan S, Rosenfeld JA, Vu TH, Baker C, Williams C, Stalker H, Hamid R, Hannig\
V et al.\
\
A copy number variation morbidity map of developmental delay.\
Nat Genet. 2011 Aug 14;43(9):838-46.\
PMID: 21841781; PMC:
Position: $chrom:${chromStart}-${chromEnd}
CNV subtype: $variant_sub_type
Frequency: $Frequency\ parent dgvPlus\ searchIndex name\ shortLabel DGV Gold Standard\ track dgvGold\ type bigBed 12 +\ url http://dgv.tcag.ca/gb2/gbrowse_details/dgv2_hg38?ref=$S;start=${;end=$};name=$$;class=Sequence\ dgvPlus DGV Struct Var bed 9 + Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del) 0 100 0 0 0 127 127 127 0 0 0 http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D
Description
\\ This track displays copy number variants (CNVs), insertions/deletions (InDels),\ inversions and inversion breakpoints annotated by the\ Database of Genomic Variants (DGV), which\ contains genomic variations observed in healthy individuals.\ DGV focuses on structural variation, defined as\ genomic alterations that involve segments of DNA that are larger than\ 1000 bp. Insertions/deletions of 50 bp or larger are also included.\
\ \Display Conventions
\\ This track contains three subtracks:\
\
- \
- Structural Variant Regions: annotations that have been generated from one or more reported\ structural variants at the same location.\ \
- Supporting Structural Variants: the sample-level reported structural variants.\ \
- Gold Standard Variants: curated variants from a selected number of studies in DGV.\ \
\ Color is used in both subtracks to indicate the type of variation:\
- \
- Inversions and\ inversion breakpoints are purple.\ \ \
- CNVs and InDels are blue if there is a\ gain in size relative to the reference.\ \ \
- CNVs and InDels are red if there is a\ loss in size relative to the reference.\ \ \
- CNVs and InDels are brown if there are reports of\ both a loss and a gain in size\ relative to the reference.\ \
\ The DGV Gold Standard subtrack utilizes a boxplot-like display to represent the \ merging of records as explained in the Methods section below. In this track, the \ middle box (where applicable), represents the high confidence location of the CNV, \ while the thin lines and end boxes represent the possible range of the CNV.\
\\ Clicking on a variant leads to a page with detailed information about the variant, \ such as the study reference and PubMed abstract link, the study's method and any\ genes overlapping the variant. Also listed, if available, are the sequencing or array platform\ used for the study, a sample cohort description, sample size, sample ID(s) in which\ the variant was observed, observed gains and observed losses.\ If the particular variant is a merged variant, links to genome browser views of \ the supporting variants are listed. If the particular variant is a supporting variant,\ a link to the genome browser view of its merged variant is displayed.\ A link to DGV's Variant Details page for each variant is also provided.\
\\ For most variants, DGV uses accessions from peer archives of structural variation\ (dbVar\ at NCBI or DGVa at EBI).\ These accessions begin with either "essv",\ "esv", "nssv", or "nsv", followed by a number.\ Variant submissions processed by EBI begin with "e"\ and those processed by NCBI begin with "n".\
\\ Accessions with ssv are for variant calls on a particular sample, and if they\ are copy number variants, they generally indicate whether the change is a gain\ or loss. \ In a few studies the ssv represents the variant called by a single\ algorithm. If multiple algorithms were used, overlapping ssv's from\ the same individual would be combined to generate a sample level\ sv. \
\\ If there are many samples analyzed in a study, and if there are many\ samples which have the same variant, there will be multiple ssv's with\ the same start and end coordinates.\ These sample level variants are then merged and combined to form a\ representative variant that highlights the common variant found in\ that study. The result is called a structural variant (sv) record.\ Accessions with sv are for regions asserted by submitters to contain\ structural variants, and often span ssv elements for both losses and\ gains. dbVar and DGVa do not record numbers of losses and gains\ encompassed within sv regions.\
\\ DGV merges clusters of variants that share at least 70% reciprocal\ overlap in size/location, and assigns an accession beginning with\ "dgv", followed by an internal variant serial number,\ followed by an abbreviated study id. For example,\ the first merged variant from the Shaikh et al. 2009 study (study\ accession=nstd21) would be dgv1n21. The second merged variant would be\ dgv2n21 and so forth.\ Since in this case there is an additional level of clustering,\ it is possible for an "sv" variant to be both a merged\ variant and a supporting variant.\
\\ For most sv and dgv variants, DGV displays the total number of\ sample-level gains and/or losses at the bottom of their variant detail\ page. Since each ssv variant is for one sample, its total is 1.\
\ \Methods
\\ Published structural variants are imported from peer archives\ dbVar and\ DGVa.\ DGV then applies quality filters and merges overlapping variants.\
\\ For data sets where the variation calls are reported at a\ sample-by-sample level, DGV merges calls with similar boundaries\ across the sample\ set. Only variants of the same type (i.e. CNVs, Indels, inversions)\ are merged, and gains and losses are merged separately.\ Sample level calls that overlap by ≥ 70% are merged in this\ process.\
\\ The initial criteria for the Gold Standard set require that a variant \ is found in at least two different studies and found in at least two different \ samples. After filtering out low-quality variants, the remaining variants are \ clustered according to 50% minimum overlap, and then merged into a single \ record. Gains and losses are merged separately.
\\ The highest ranking variant in the cluster defines the inner box, while the \ outer lines define the maximum possible start and stop coordinates of the CNV. \ In this way, the inner box forms a high-confidence CNV location and the \ thin connecting lines indicate confidence intervals for the location of CNV.
\ \Data Access
\\
The raw data can be explored interactively with the Table Browser, or\
the Data Integrator. For automated access, this track, like all\
others, is available via our API. However, for bulk\
processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed\
file that can be downloaded from the\
download server.\
The exact filenames can be found in the track configuration file. Annotations can be converted to\
ASCII text by our tool bigBedToBed which can be compiled from the source code or\
downloaded as a precompiled binary for your system. Instructions for downloading source code and\
binaries can be found\
here. The tool can\
also be used to obtain only features within a given range, for example:
\ bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/hg38/dgv/dgvMerged.bb -chrom=chr6 -start=0 -end=1000000 stdout\\ \
Credits
\\ Thanks to the Database of Genomic Variants for providing these data.\ In citing the Database of Genomic Variants please refer to MacDonald\ et al.\
\ \References
\\ Iafrate AJ, Feuk L, Rivera MN, Listewnik ML, Donahoe PK, Qi Y, Scherer SW, Lee C.\ \ Detection of large-scale variation in the human genome.\ Nat Genet. 2004 Sep;36(9):949-51.\ PMID: 15286789\
\ \\
MacDonald JR, Ziman R, Yuen RK, Feuk L, Scherer SW.\
\
The Database of Genomic Variants: a curated collection of structural variation in the human\
genome.\
Nucleic Acids Res. 2014 Jan;42(Database issue):D986-92.\
PMID: 24174537; PMC:
\ Zhang J, Feuk L, Duggan GE, Khaja R, Scherer SW.\ \ Development of bioinformatics resources for display and analysis of copy number and other structural\ variants in the human genome.\ Cytogenet Genome Res. 2006;115(3-4):205-14.\ PMID: 17124402\
\ \ varRep 1 compositeTrack on\ coriellUrlBase http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=\ dataVersion 2020-02-25\ exonArrows off\ exonNumbers off\ group varRep\ itemRgb on\ longLabel Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)\ noScoreFilter .\ shortLabel DGV Struct Var\ track dgvPlus\ type bed 9 +\ url http://dgv.tcag.ca/dgv/app/variant?id=$$&ref=$D\ urlLabel DGV Browser and Report:\ visibility hide\ dosageSensitivity Dosage Sensitivity bigBed 9 + 2 pHaplo and pTriplo dosage sensitivity map from Collins et al 2022 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This container track represents dosage sensitivity map data from Collins et al 2022. There are\ two tracks, one corresponding to the probability of haploinsufficiency (pHaplo) and \ one to the probability of triplosensitivity (pTriplo).
\\ Rare copy-number variants (rCNVs) include deletions and duplications that occur \ infrequently in the global human population and can confer substantial risk for \ disease. Collins et al aimed to quantify the properties of haploinsufficiency (i.e., \ deletion intolerance) and triplosensitivity (i.e., duplication intolerance) throughout \ the human genome by analyzing rCNVs from nearly one million individuals to construct a \ genome-wide catalog of dosage sensitivity across 54 disorders, which defined 163 dosage \ sensitive segments associated with at least one disorder. These segments were typically \ gene-dense and often harbored dominant dosage sensitive driver genes. An ensemble \ machine learning model was built to predict dosage sensitivity probabilities (pHaplo & \ pTriplo) for all autosomal genes, which identified 2,987 haploinsufficient and 1,559 \ triplosensitive genes, including 648 that were uniquely triplosensitive.\
\ \Display Conventions and Configuration
\ \\ Each of the tracks is displayed with a distinct item (bed track) covering the entire gene locus wherever \ a score was available. Clicking on an item provides a link to DECIPHER which contains the sensitivity scores as well as\ additional information. Mousing over the items will display the gene symbol, the ESNG ID for that gene, \ and the respective sensitivity score for the track rounded to two decimal places. Filters are \ also available to specify specific score thresholds to display for each of the tracks.
\ \Coloring and Interpretation
\ \\
\ Each of the tracks is colored based on standardized cutoffs for pHaplo and pTriplo as described by the\ authors:
\\ pHaplo scores ≥0.86 indicate that the average effect sizes of deletions are as strong as \ the loss-of-function of genes known to be constrained against protein truncating variants (average OR≥2.7)\ (Karczewski et al., 2020). \ pHaplo scores ≥0.55 indicate an odds ratio ≥2.
\\ pTriplo scores ≥0.94 indicate that the average effect sizes of deletions are as strong as\ the loss-of-function of genes known to be constrained against protein truncating variants (average OR≥2.7)\ (Karczewski et al., 2020).\ pHaplo scores ≥0.68 indicate an odds ratio ≥2.
\\ Applying these cutoffs defined 2,987 haploinsufficient (pHaplo≥0.86) and 1,559\ triplosensitive (pTriplo≥0.94) genes with rCNV effect sizes comparable to loss-of-function\ of gold-standard PTV-constrained genes.
\\
See below for a summary of the color scheme:
\ \- \
- Dark red items - pHaplo ≥ 0.86 \
- Bright red items - pHaplo < 0.86 \
- Dark blue items - pTriplo ≥ 0.94 \
- Bright blue items - pTriplo < 0.94 \
Methods
\ \\ The data were downloaded from Zenodo which consisted of a 3-column file with\ gene symbols, pHaplo, and pTriplo scores. Since the data were created using\ GENCODEv19 models, the hg19 data was mapped using those coordinates by picking the earliest\ transcription start site of all of the respective gene transcripts and the furthest \ transcription end site. This leads to some gene boundaries that are not representative of a real\ transcript, but since the data are for gene loci annotations this maximum coverage was used.\ Finally, both scores were rounded to two decimal points for easier interpretation.
\\ For hg38, we attempted to use updated gene positions using a few different datasets since \ gene symbols have been updated many times since GENCODEv19. A summary of the workflow\ can be seen below, with each subsequent step being used only for genes where mapping failed:
\- \
- Gene symbols were mapped using MANE1.0. < 2000 items failed mapping here. \
- Mapping with GENCODEv45 was attempted. \
- Mapping with GENCODEv20 was attempted. At this point, 448 items were not mapped. \
- Finally, any missing items were lifted using the hg19 track. 19/448 items failed\ mapping due to their regions having been split from hg19 to hg38.
\ In summary, the hg19 track was mapped using the original GENCODEv19 mappings, and a series\ of steps were taken to map the hg38 gene symbols with updated coordinates. 19/18641 items\ could not be mapped and are missing from the hg38 tracks.
\\ The complete \ makeDoc can be found online. This includes all of the track creation steps.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tool \
bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/dosageSensitivityCollins2022/pHaploDosageSensitivity.bb stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\ \\ Thanks to DECIPHER for their support and assistance with the data. We would also like to \ thank Anna Benet-Pagès for suggesting and assisting in track development and interpretation.\
\ \References
\ \\
Collins RL, Glessner JT, Porcu E, Lepamets M, Brandon R, Lauricella C, Han L, Morley T, Niestroj LM,\
Ulirsch J et al.\
\
A cross-disorder dosage sensitivity map of the human genome.\
Cell. 2022 Aug 4;185(16):3041-3055.e25.\
PMID: 35917817; PMC:
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 39\ shortLabel ENCFF431JDU_ENCFF964OOU_ENCFF787LMI_ENCFF388PVO\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=HCT116 biosampleType=cell_line donor=ENCDO000ABE dataType=typeCcres\ track ENCFF431JDU_ENCFF964OOU_ENCFF787LMI_ENCFF388PVO\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ encode4LongRnaTranscripts ENCODE4 Transcripts bigBed 12 + ENCODE4 Long Read Transcripts 3 100 0 0 0 127 127 127 0 0 0 \ \ \ \ \ \
Description
\\ The ENCODE4 long-read RNA-seq collection annotates trancripts using numerical triplets representing \ the identity of the start site, exon junction chain, and transcript end site of each transcript. \ This method reveals how promoter selection, splice pattern, and 3’ processing are deployed across \ human tissues.\
\ \Display Conventions
\\ Transcript names include a triplet annotation that represents transcript start site, exon junction \ chain, and transcript end site. For example, if transcript A has the label [1,2,3] and transcript B\ is labeled [1,1,3], then those transcripts share start and end sites but have a different combination\ of exons. Here is an exmaple drawn from hg38 at the INSIG1 locus:
\ \
\
\
\ In this example, the first two transcripts marked by arrows have the same start\ site ("1") and the same set of exons ("8"), but they have different end sites\ ("2" vs "1"). Similarly, the second two marked transcripts have the same start\ site ("1"), but a different set of exons ("8" vs "9") and a different end site\ ("1" vs "2").\
\ \ \\ GENCODE V29 and V40 were used as reference data; any transcript not present in either of these is\ colored blue.
\\ Mouseover on transcripts shows their ENCODE gene ID and the tissue or cell line where it’s most highly\ expressed and its TPM in that sample.\
\ \Data Access
\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API.\ \\ The data underlying this track is available in the file\ encode4LongRna.bb.\ Individual regions or the whole genome annotation can be obtained using our\ tool bigBedToBed, which is available on our\ download server.\ For example, to extract only annotations in a given region, you could use the following command:\
\ \\ bigBedToBed -chrom=chr1 -start=100000 -end=100500 https://hgdownload.gi.ucsc.edu/gbdb/hg38/encode4LongRna.bb stdout\\ \
\ Please refer to our\ mailing list archives\ for questions, or our\ Data Access FAQ\ for more information.\
\ \Methods
\\
Data were retrieved from
Credits
\\ Thanks to Fairlie Reese for providing data access and for helpful feedback.\
\ \References
\\
Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie N, Trout D,\
Razavi-Mohseni M, Jiang Y et al.\
\
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure\
diversity.\
bioRxiv. 2023 May 16;.\
PMID: 37292896; PMC:
$gene_name
${maxScoreHtml}\ shortLabel ENCODE4 Transcripts\ superTrack long_read_transcripts\ track encode4LongRnaTranscripts\ type bigBed 12 +\ visibility pack\ wgEncodeReg4TfChip_ENCFF035DJL ENCSR000AUV Signal bigWig B cell female adult (27 years) and female adult (43 years) CTCF ENCSR000AUV signal 2 100 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/80b6f380-4c85-41b7-ae2d-a2f94a37e0cb/ENCFF035DJL.bigWig\ color 254,75,173\ longLabel B cell female adult (27 years) and female adult (43 years) CTCF ENCSR000AUV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUV Signal\ track wgEncodeReg4TfChip_ENCFF035DJL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF516BSM ENCSR000BQE Peak bigBed 5 Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour CTCF peak 4 100 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/87f4a074-8a74-4993-8ffb-3b175a14a093/ENCFF516BSM.bigBed\ color 0,176,240\ labelFields none\ longLabel Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BQE Peak\ track wgEncodeReg4Epigenetics_ENCFF516BSM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF069ZNL ENCSR007SVQ - strand bigWig Dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal 2 100 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/4e7de94d-8fa9-40b1-8027-249d7ce2222b/ENCFF069ZNL.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR007SVQ - strand\ track wgEncodeReg4RnaSeq_ENCFF069ZNL\ type bigWig\ visibility full\ varChat enGenome VarChat bigBed 9 + 4 enGenome VarChat: Literature match and variant's summary 1 100 0 0 0 127 127 127 0 0 0 https://varchat.engenome.com/search?source=ucsc&text=$
Description
\\
\
\
NOTE:
VarChat is an open platform \
powered by enGenome, and registration is free of charge. VarChat is intended for research\
use and may provide inaccurate answers. It is advisable to verify critical information independently.
\ VarChat is an open platform that leverages \ the power of generative artificial intelligence to support the genomic variant interpretation process \ by searching the available scientific literature for each variant and condensing it into a brief\ yet informative text. Each query quickly scans the latest scientific literature to provide\ up-to-date variant information.\
\ \\ VarChat is a generative AI-based system and each answer is generated live, so you may obtain slightly \ different answers at each iteration. A literature search will be performed and the total number of \ identified publications will be shown. Only a subset of them will be reported and used to generate your answer.\
\ \\ If you would like to stay updated on the latest developments, you may register for updates on the\ VarChat website. For data questions, VarChat\ can be contacted at varchat@engenome.com.
\ \Display Conventions and Configuration
\ \\ Genomic locations of variants are labeled with the nucleotide change.\ Mousing over the items will show how many papers the variant was observed in, its gene,\ its HGVS nomenclature, and dbSNP rsID.\ Clicking on any item will provide a link directly to VarChat with additional information.
\ \\ The items are colored based on the amount of literature support as described on the table below:\
\ \\
| Color | \Level of literature support | \
|---|---|
| \ | High: at least 25 papers mention the variant | \
| \ | Medium: between 10 and 24 papers mention the variant | \
| \ | Low: fewer than 10 papers mention the variant | \
Methods
\\
VarChat software is powered by enGenome.
\
enGenome, an accredited spin-off from the University of Pavia founded in 2016, combines bioinformatics, biotechnology, and software development expertise to enhance genetic disease diagnosis and treatment through advanced AI and bioinformatics tools, supported by a multidisciplinary team of engineers, biotechnologists, and developers.\
\ For every queried variant, VarChat produces concise and coherent summaries through an LLM model.\ Relevant references are identified through a modified BM25 ranking algorithm. More weight is\ given to papers that cite the variant in the abstract and were published in the last two years,\ while papers that report the variant only in the supplementary are penalized.
\ \Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be accessed from scripts through our\ API, the track name is "varChat".
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called varChat.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system.
\\
Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g.\
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/varChat.bb -chrom=chr21 -start=0 -end=10000000 stdout
References
\\
De Paoli F, Berardelli S, Limongelli I, Rizzo E, Zucca S.
Description
\ \\ These tracks represent the experimentally validated promoters generated by \ the Eukaryotic Promoter Database.\
\ \Display Conventions and Configuration
\ \\ Each item in the track is a representation of the promoter sequence identified by EPD. The\ "thin" part of the element represents the 49 bp upstream of the annotated transcription\ start site (TSS) whereas the "thick" part represents the TSS plus 10 bp downstream. The\ relative position of the thick and thin parts define the orientation of the promoter.
\\ Note that the EPD team has created a public track hub containing\ promoter and supporting annotations for human, mouse, and other vertebrate and model organism\ genomes.
\ \Methods
\\ Briefly, gene transcript coordinates were obtained from multiple sources (HGNC, GENCODE, Ensembl,\ RefSeq) and validated using data from CAGE and RAMPAGE experimental studies obtained from FANTOM 5,\ UCSC, and ENCODE. Peak calling, clustering and filtering based on relative expression were applied\ to identify the most expressed promoters and those present in the largest number of samples.
\\ For the methodology and principles used by EPD to predict TSSs, refer to Dreos et al.\ (2013) in the References section below. A more detailed description of how this data was\ generated can be found at the following links:\ \
- \
- \ Human promoter pipelines: \ coding,\ non-coding\ \
- \ Mouse promoter pipelines:\ coding,\ non-coding\ \
Credits
\ \\ Data was generated by the EPD team at the \ Swiss Institute of Bioinformatics. \ For inquiries, contact the EPD team using this on-line form \ or email \ \ philipp.\ bucher@epfl.\ ch\ \ .\
\ \References
\ \\
Dreos R, Ambrosini G, Perier RC, Bucher P.\
\
EPD and EPDnew, high-quality promoter resources in the\
next-generation sequencing era. Nucleic Acids\
Res. 2013 Jan 1;41(D1):D157-64. PMID:
Description
\\ This set of tracks shows the genomic positions of probes and targets from a full \ suite of in-solution-capture target enrichment exome kits for Next Generation Sequencing (NGS)\ applications. Also known as exome sequencing or whole exome sequencing (WES), \ this technique allows high-throughput parallel sequencing of all exons (e.g., coding regions of genes \ which affect protein function), constituting about 1% of the human genome, or approximately 30 \ million base pairs.\
\\ The tracks are intended to show the major differences in target genomic regions between the \ different exome capture kits from the major players in the NGS sequencing market:\ Illumina Inc., \ Roche NimbleGen Inc., \ Agilent Technologies Inc.,\ MGI Tech,\ Twist Bioscience, and\ Integrated DNA Technologies Inc..\
\ \Display Conventions and Configuration
\ \\ Items are shaded according to manufacturing company:\
- \
- IDT (Integrated DNA Technologies) \
- Twist Biosciences \
- MGI Tech (Beijing Genomics Institute) \
- Roche NimbleGen \
- Agilent Technologies \
- Illumina \
\ Tracks labeled as Probes (P) indicate the footprint of the oligonucleotide probes\ mapped to the human genome. This is the technically relevant targeted region by the assay. However, \ the sequenced region will be bigger than this since flanking sequences are sequenced as well. \ Tracks labeled as Target Regions (T) indicate the genomic regions targeted by the\ assay. This is the biologically relevant target region. Not all targeted regions\ will necessarily be sequenced perfectly; there might be some capture bias at certain locations.\ The Target\ Regions are those normally used for coverage analysis. \
\ \Note that most exome probesets are available on hg19 only. If you are working with hg38 and cannot find\ a particular probeset there, try to go to hg19, configure the same track, and\ see if it exists there. If you cannot find an array, do not hesitate to send us\ an email with the name of the manufacturer website with the probe file. If\ an array is available on hg19 but not on hg38 and you need it for your work, we\ can lift the locations. Our mailing list can be reached at genome@soe.ucsc.edu.\
\ \Methods
\ \\ The capture of the genomic regions of interest using in-solution capture, is achieved \ through the hybridization of a set of probes (oligonucleotides) with a sample of fragmented genomic \ DNA in a solution environment. The probes hybridize selectively to the genomic regions of interest \ which, after a process of exclusion of the non-selective DNA material, can be pulled down and \ sequenced, enabling selective DNA sequencing of the genomic regions of interest (e.g., exons).\ In-solution capture sequencing is a sensitive method to detect single nucleotide variants, \ insertions and deletions, and copy number variations.\
\ \ \ \
| Kit | \Targeted Region | \Databases Used for Design | \Year of Release | \
|---|---|---|---|
| IDT - xGen Exome Research Panel V1.0 | \ \ \ \ \39 Mb | \Coding sequences from RefSeq (19,396 genes) | \2015 | \
| IDT - xGen Exome Research Panel V2.0 | \34 Mb | \Coding sequences from RefSeq 109 (19,433 genes) | \2020 | \
| Twist - RefSeq Exome Panel | \3.6 Mb | \Curated subset of protein coding genes from CCDS | \N/A | \
| Twist - Core Exome Panel | \33 Mb | \Protein coding genes from CCDS | \N/A | \
| Twist - Comprehensive Exome Panel | \36.8 Mb | \Protein coding genes from RefSeq, CCDS, and GENCODE | \2020 | \
| Twist - Exome Panel 2.0 | \36.4 Mb | \Protein coding genes from RefSeq, CCDS, and GENCODE | \2021 | \
| MGI - Easy Exome Capture V4 | \59 Mb | \CCDS, GENCODE, RefSeq, and miRBase | \N/A | \
| MGI - Easy Exome Capture V5 | \69 Mb | \CCDS, GENCODE, RefSeq, miRBase, and MGI Clinical Database | \N/A | \
| Agilent - SureSelect Clinical Research Exome | \54 Mb | \Disease-associated regions from OMIM, HGMD, and ClinVar | \2014 | \
| Agilent - SureSelect Clinical Research Exome V2 | \63.7 Mb | \Disease-associated regions from OMIM, HGMD, ClinVar, and ACMG | \2017 | \
| Agilent - SureSelect Focused Exome | \12 Mb | \Disease-associated regions from HGMD, OMIM and ClinVar | \2016 | \
| Agilent - SureSelect All Exon V4 | \51 Mb | \Coding regions from CCDS, RefSeq, and GENCODE v6, miRBase v17, TCGA v6, and UCSC known genes | \2011 | \
| Agilent - SureSelect All Exon V4 + UTRs | \71 Mb | \Coding regions and 5' and 3' UTR sequences from CCDS, RefSeq, and GENCODE v6, regions from miRBase v17, TCGA v6, and UCSC known genes | \2011 | \
| Agilent - SureSelect All Exon V5 | \50 Mb | \Coding regions from Refseq, GENCODE, UCSC, TCGA, CCDS, and miRBase (21.522 genes) | \2012 | \
| Agilent - SureSelect All Exon V5 + UTRs | \74 Mb | \Coding regions and 5' and 3' UTR sequences from Refseq, GENCODE, UCSC, TCGA, CCDS, and miRBase (21.522 genes) | \2012 | \
| Agilent - SureSelect All Exon V6 r2 | \60 Mb | \Coding regions from RefSeq, CCDS, GENCODE, HGMD, and OMIM | \2016 | \
| Agilent - SureSelect All Exon V6 + COSMIC r2 | \66 Mb | \Coding regions from RefSeq, CCDS, GENCODE, HGMD, and OMIM, and targets from both TCGA and COSMIC | \2016 | \
| Agilent - SureSelect All Exon V6 + UTR r2 | \75 Mb | \Coding regions and 5' and 3' UTR sequences from RefSeq, GENCODE, CCDS, and UCSC known genes,and miRNAs and lncRNA sequences | \2016 | \
| Agilent - SureSelect All Exon V7 | \35.7 Mb | \Coding regions from RefSeq, CCDS, GENCODE, and UCSC known genes | \2018 | \
| Roche - KAPA HyperExome | \43Mb | \Coding regions from CCDS, RefSeq, Ensembl, GENCODE,and variants from ClinVar | \2020 | \
| Roche - SeqCap EZ Exome V3 | \64 Mb | \Coding regions from RefSeq RefGene CDS, CCDS, and miRBase v14 databases, plus coverage of 97% Vega, 97% Gencode, and 99% Ensembl | \2018 | \
| Roche - SeqCap EZ Exome V3 + UTR | \92 Mb | \Coding sequences from RefSeq RefGene, CCDS, and miRBase v14, plus coverage of 97% Vega, 97% Gencode, and 99% Ensembl and UTRs from RefSeq RefGene table from UCSC GRCh37/hg19 March 2012 and Ensembl (GRCh37 v64) | \2018 | \
| Roche - SeqCap EZ MedExome | \47 Mb | \Coding sequences from CCDS 17, RefSeq, Ensembl 76, VEGA 56, GENCODE 20, miRBase 21, and disease-associated regions from GeneTests, ClinVar, and based on customer input | \2014 | \
| Roche - SeqCap EZ MedExome + Mito | \47 Mb | \Coding sequences and mitochondrial genes from CCDS 17, RefSeq, Ensembl 76, VEGA 56, GENCODE 20 and miRBase 21, disease-associated regions from GeneTests, ClinVar, and based on customer input | \2014 | \
| Illumina - Nextera DNA Exome V1.2 | \45 Mb | \Coding regions from RefSeq, CCDS, Ensembl, and GENCODE v19 | \2015 | \
| Illumina - Nextera Rapid Capture Exome | \37 Mb | \212,158 targeted exonic regions with start and stop chromosome locations in GRCh37/hg19 | \2013 | \
| Illumina - Nextera Rapid Capture Exome V1.2 | \37 Mb | \Coding regions from RefSeq, CCDS, Ensembl, and GENCODE v12 | \2014 | \
| Illumina - Nextera Rapid Capture Expanded Exome | \66 Mb | \Coding regions from RefSeq, CCDS, Ensembl, and GENCODE v12 | \2013 | \
| Illumina - TruSeq DNA Exome V1.2 | \45 Mb | \Coding regions from RefSeq, CCDS, and Ensembl | \2017 | \
| Illumina - TruSeq Rapid Exome V1.2 | \45 Mb | \Coding regions from RefSeq, CCDS, Ensembl, and GENECODE v19 | \2015 | \
| Illumina - TruSight ONE V1.1 | \12 Mb | \Coding regions of 6700 genes from HGMD, OMIM, and GeneTest | \2017 | \
| Illumina - TruSight Exome | \7 Mb | \Disease-causing mutations as curated by HGMD | \2017 | \
| Illumina - AmpliSeq Exome Panel | \N/A | \CCDS coding regions | \2019 | \
Data Access
\\ The raw data can be explored interactively with the Table Browser\ or cross-referenced with Data Integrator. The data can be\ accessed from scripts through our API, with track names\ found in the Table Schema page for each subtrack after "Primary Table:".\ \
\ For downloading the data, the annotations are stored in bigBed files that\ can be accessed at\ \ our download directory. \ Regional or the whole genome text annotations can be obtained using our utility \ bigBedToBed. Instructions for downloading utilities can be found\ here.\
\ \Credits
\ \\ Thanks to Illumina (U.S.), Roche NimbleGen, Inc. (U.S.), Agilent Technologies (U.S.), MGI Tech\ (Beijing Genomics Institute, China), Twist Bioscience (U.S.), and Integrated DNA Technologies (IDT),\ Inc. (U.S.), and Bionano Genomics (U.S.) for making these data available and to Tiana Pereira, Pranav Muthuraman, Began Nguy\ and Anna Benet-Pages for enginering these tracks.\
\ \ \ \ map 1 allButtonPair on\ compositeTrack on\ group map\ longLabel Exome Capture Probesets and Targeted Region\ shortLabel Exome Probesets\ track exomeProbesets\ type bigBed\ visibility hide\ fantom5 FANTOM5 FANTOM5: Mapped transcription start sites (TSS) and their usage 0 100 0 0 0 127 127 127 0 0 0Description
\\ The FANTOM5 track shows mapped transcription start sites (TSS) and their usage in primary cells,\ cell lines, and tissues to produce a comprehensive overview of gene expression across the human\ body by using single molecule sequencing.\
\ \Display Conventions and Configuration
\ \Items in this track are colored according to their strand orientation. Blue\ indicates alignment to the negative strand, and red indicates\ alignment to the positive strand.\
\ \Methods
\Protocol
\Individual biological states are profiled by HeliScopeCAGE, which is a variation of the CAGE\ (Cap Analysis Gene Expression) protocol based on a single molecule sequencer. The standard protocol\ requiring 5 µg of total RNA as a starting material is referred to as hCAGE, and an\ optimized version for a lower quantity (~ 100 ng) is referred to as LQhCAGE (Kanamori-Katyama\ et al. 2011).\
- \
- hCAGE \
- LQhCAGE \
Samples
\Transcription start sites (TSSs) were mapped and their usage in human and mouse primary cells,\ cell lines, and tissues was to produce a comprehensive overview of mammalian gene expression across the\ human body. 5′-end of the mapped CAGE reads are counted at a single base pair resolution\ (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the\ sample. Individual samples shown in "TSS activity" tracks are grouped as below.\
- \
- Primary cell \
- Tissue \
- Cell Line \
- Time course \
- Fractionation \
TSS peaks
\TSS (CAGE) peaks across the panel of the biological states (samples) are identified by DPI\ (decomposition based peak identification, Forrest et al. 2014), where each of the peaks consists of\ neighboring and related TSSs. The peaks are used as anchors to define promoters and units of\ promoter-level expression analysis. Two subsets of the peaks are defined based on evidence of read\ counts, depending on scopes of subsequent analyses, and the first subset (referred as a\ robust set of the peaks, thresholded for expression analysis is shown as TSS peaks. They are\ named "p#@GENE_SYMBOL" if associated with 5'-end of known genes, or "p@CHROM:START..END,STRAND"\ otherwise. The summary tracks consist of the TSS (CAGE) peaks and summary profiles of TSS\ activities (total and maximum values). The summary track consists of the following tracks.\
- \
- TSS (CAGE) peaks\
- \
- the robust peaks \
\
- TSS summary profiles\
- \
- Total counts and TPM (tags per million) in all the samples \
- Maximum counts and TPM among the samples \
\
TSS activity
\\ 5′-end of the mapped CAGE reads are counted at a single base pair resolution (CTSS, CAGE tag starting sites) on the genomic coordinates, which represent TSS activities in the sample. The read counts tracks indicate raw counts of CAGE reads, and the TPM tracks indicate normalized counts as TPM (tags per million).\
\ \- \
- Categories of individual samples \
- - Cell Line hCAGE \
- - Cell Line LQhCAGE \
- - fractionation hCAGE \
- - Primary cell hCAGE \
- - Primary cell LQhCAGE \
- - Time course hCAGE \
- - Tissue hCAGE \
Data Access
\\ FANTOM5 data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ The FANTOM5 reprocessed data can be found and downloaded on the FANTOM website.
\ \Credits
\ \\ Thanks to the FANTOM5 consortium,\ the Large Scale Data Managing Unit and Preventive Medicine and\ Applied Genomics Unit, the Center for Integrative Medical Sciences (IMS), and\ RIKEN for providing this data\ and its analysis.
\ \References
\\
FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de\
Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M et al.\
\
A promoter-level mammalian expression atlas.\
Nature. 2014 Mar 27;507(7493):462-70.\
PMID: 24670764; PMC:
\
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya\
N, Daub CO et al.\
\
Unamplified cap analysis of gene expression on a single-molecule sequencer.\
Genome Res. 2011 Jul;21(7):1150-9.\
PMID: 21596820; PMC:
\
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, Abugessaisa I, Fukuda S, Hori F,\
Ishikawa-Kato S et al.\
\
Gateways to the FANTOM5 promoter level mammalian expression atlas.\
Genome Biol. 2015 Jan 5;16(1):22.\
PMID: 25723102; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\
This group of tracks shows data from
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ The Fetal Cells subtrack contains the \ data organized by cell type, with RNA signals from all cells of a given type pooled \ and averaged into one bar for each cell type. The \ Fetal Lineage subtrack shows \ similar data, but with the cell types subdivided more finely and by organ. Additional \ bar chart subtracks pool the cell by other characteristics such as by sex \ (Fetal Sex), assay \ (FetalAssay), donor \ (Fetal Donor ID), experiment \ (Fetal Exp), organ \ (Fetal Organ), and reverse transcription group \ (Fetal RT Group).
\ \\
Please see
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\ The coloring algorithm allows cells that show some blended characteristics to show blended\ colors so there will be some color variation within a class. The colors will be purest in\ the Fetal Cells subtrack, where the bars \ represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.\ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia |
Methods
\\ Three-level single-cell combinatorial indexing (sci-RNAseq3) as described in\ Cao et al., 2020 was used on 121 samples from 28 fetuses estimated 72\ to 129 days post-conception. This included samples from 15 organs. and\ resulted in RNA profiles for 4 million cells. The samples were flash-frozen for\ majority of the experiments and then nuclei extracted for sequencing. Samples\ from tissues from the kidney and digestive system were fixed after\ disassociation to deactivate endogenous RNases and proteases.
\ \The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \ \ \Credits
\Thanks to the many authors who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
Description
\\ This track shows the location of fluorescent in situ hybridization \ (FISH)-mapped clones along the assembly sequence. The locations of\ these clones were obtained from the NCBI Human BAC Resource\ here. Earlier versions of this track obtained this\ information directly from the paper Cheung, et al. (2001).\
\ \\ More information about the BAC clones, including how they may be obtained, \ can be found at the \ Human BAC Resource and the \ Clone Registry web sites hosted by \ NCBI.\ To view Clone Registry information for a clone, click on the clone name at \ the top of the details page for that item.
\ \Using the Filter
\\ This track has a filter that can be used to change the color or \ include/exclude the display of a dataset from an individual lab. This is \ helpful when many items are shown in the track display, especially when only \ some are relevant to the current task. The filter is located at the top of \ the track description page, which is accessed via the small button to the \ left of the track's graphical display or through the link on the track's \ control menu. To use the filter:\
- \
- In the pulldown menu, select the lab whose data you would like to \ highlight or exclude in the display. \
- Choose the color or display characteristic that will be used to highlight \ or include/exclude the filtered items. If "exclude" is chosen, the \ browser will not display clones from the lab selected in the pulldown list. \ If "include" is selected, the browser will display clones only \ from the selected lab.\
\ When you have finished configuring the filter, click the Submit \ button.
\ \Credits
\\ We would like to thank all of the labs that have contributed to this resource:\
- \
- Fred Hutchinson Cancer Research Center (FHCRC) \
- National Cancer Institute (NCI) \
- Roswell Park Cancer Institute (RPCI) \
- The Wellcome Trust Sanger Institute (SC) \
- Cedars-Sinai Medical Center (CSMC) \
- Los Alamos National Laboratory (LANL) \
- UC San Francisco Cancer Center (UCSF) \
References
\\ Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M et\ al.\ \ Integration of cytogenetic landmarks into the draft sequence of the human genome.\ Nature. 2001 Feb 15;409(6822):953-8.\ PMID: 11237021\
\ map 1 color 0,150,0,\ group map\ longLabel Clones Placed on Cytogenetic Map Using FISH\ origAssembly hg18\ pennantIcon 18.jpg ../goldenPath/help/liftOver.html "lifted from hg18"\ shortLabel FISH Clones\ superTrack assemblyContainer pack\ track fishClones\ type bed 5 +\ visibility hide\ g2p G2P Project bigBed 9 + Gene2Phenotype Project 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This track displays detailed, evidence-based gene-disease models, curated from the literature by\ experts. The track can be used to filter genomic sequencing data from individuals with genetic\ disorders to identify likely causative variants and accelerate diagnosis. More information about\ the G2P project can be found on the\ Gene2Phenotype\ website.\
\ \Display Conventions and Configuration
\ \\ For each track, items are colored according to the likelihood that the gene-disease\ association is true:
\- \
- Dark-green - Definitive \
- Green - Strong \
- Light-green - Moderate \
- Pink - Limited \
- Red - Disputed \
- Dark-red - Refuted \
Each mouseover tooltip provides the following information:
\- \
- G2P ID: Unique identifier assigned by the Gene2Phenotype (G2P) database. \
- Variant Consequence: Predicted effect each allele of a variant has on a\ transcript. \
- Disease Name: Name of the disease associated with the variant. \
- PubMed IDs: Publications associated with the variant. \
- Molecular Mechanism: Description of the molecular processes and interactions\ causing pathogenic effects. \
- Allelic Requirements: Number of alleles required at a locus to produce a\ pathogenic phenotype (e.g., monoallelic, biallelic). \
- Date of Last Review: Most recent date the entry was manually reviewed. \
Method
\\ Expert-curated gene disease models released by the Gene2Phenotype project were imported and\ processed to create a BED-based track annotating genomic regions reported to be associated with\ disease in the literature. Standard genome assembly coordinates and gene annotations were used to\ map entries to the browser.\
\ \Contact
\\ For more information on the Gene2Phenotype project, please contact \ \ g2p-help@ebi.\ ac.\ uk\ \
\ \Data Access
\\ Source data for these tracks are available directly from\ Gene2Phenotype. \
\ \References
\\
Thormann A, Halachev M, McLaren W, Moore DJ, Svinti V, Campbell A, Kerr SM, Tischkowitz M, Hunt SE,\
Dunlop MG et al.\
\
Flexible and scalable diagnostic filtering of genomic variants using G2P with Ensembl VEP.\
Nat Commun. 2019 May 30;10(1):2373.\
DOI: 10.1038/s41467-019-10016-3; PMID:
\
Yates TM, Ansari M, Thompson L, Hunt SE, Uhalte EC, Hobson RJ, Marsh JA, Wright CF, Firth HV.\
\
Curating genomic disease-gene relationships with Gene2Phenotype (G2P).\
Genome Med. 2024 Nov 6;16(1):127.\
DOI: 10.1186/s13073-024-01398-1; PMID:
Variant Consequence: ${variant_consequence}
Disease Name: ${disease_name}
Pubmed IDs: ${publications}
Molecular Mechanism: ${molecular_mechanism}
Allelic Requirements: ${allelic_requirement}
Date of Last Review: ${date_of_last_review}\ shortLabel G2P Project\ track g2p\ type bigBed 9 +\ urls g2p_id="https://www.ebi.ac.uk/gene2phenotype/lgd/$$" gene_mim="https://omim.org/entry/$$" hgnc_id="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$" publications="https://pubmed.ncbi.nlm.nih.gov/$$/" phenotypes="https://www.ebi.ac.uk/ols4/ontologies/hp/classes?obo_id=$$" disease_mim="https://omim.org/entry/$$" disease_MONDO="https://monarchinitiative.org/$$"\ visibility hide\ ga4kSv GA4K 502 SVs bigBed 9 + Structural Variants from 502 Children's Mercy GA4K Probands (PacBio HiFi) 0 100 0 0 0 127 127 127 0 0 0
Description
\\ This track shows structural variants (SVs) identified by PacBio HiFi long-read\ sequencing of probands and their families enrolled in the Genomic Answers for\ Kids (GA4K) program at Children's Mercy Research Institute. GA4K is a\ longitudinal pediatric genomics initiative that aims to enroll 30,000 children\ with suspected rare genetic disorders, together with their parents, to build\ a large-scale resource of clinical and genomic data.\
\\ The callset contains 115,554 SVs (52,564 deletions, 58,219 insertions, 4,408\ duplications, 363 inversions) from 502 sequenced samples. Variants are\ site-level (no per-sample genotypes) and each SV has been replicated, meaning\ that it was either observed in two or more unrelated GA4K individuals, or\ matched an SV from an external long-read reference set (Decode or the Human\ Pangenome Reference Consortium).\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Duplications (DUP) - green \
- Inversions (INV) - orange \
\ Insertions are placed at the insertion site with a width of 1 bp; deletions,\ duplications and inversions span the affected interval. Filters are available\ for SV type, SV length, carrier-sample count and allele frequency. The detail\ page also shows the total number of samples genotyped at each site.\
\ \Methods
\\ The Genomic Answers for Kids (GA4K) program at Children's Mercy Research\ Institute is a longitudinal pediatric rare-disease initiative described in\ Cohen et al. 2022. GA4K probands and their families are sequenced with\ PacBio HiFi long reads (Revio and Sequel II), and the 502-sample GA4K\ PacBio SV release (pb_joint_merged.sv.vcf.gz) is produced by\ running \ pbsv per sample and merging with\ JASMINE\ v1.1.4 (--output-genotypes). The merged site-level VCF is\ filtered to SVs replicated in at least two independent observations\ (either matching a second unrelated CMH individual in the same Jasmine\ cluster, or matching an SV in the deCODE Icelandic or HPRC callsets via\ \ svpack match). The released catalog contains 115,554 replicated SVs\ (52,564 deletions, 58,219 insertions, 4,408 duplications and 363\ inversions) with recomputed carrier counts (SVC), total sample counts\ (SVN) and allele frequencies (SVF = SVC/SVN).\
\\ The source VCF was cloned from the Children's Mercy Research Institute\ GA4K GitHub repository,\ \ github.com/ChildrensMercyResearchInstitute/GA4K\ (pacbio_sv_vcf/pb_joint_merged.sv.vcf.gz).\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator and exported from there\ to spreadsheet or tab-sep tables. From scripts, the data can be accessed\ through our API, track=ga4kSv.\
\\ For automated download and analysis, the annotation is stored in a bigBed file\ that can be downloaded from\ our\ download server. The file for this track is called ga4kSv.bb.\ Individual regions or the whole annotation can be obtained using the\ bigBedToBed utility, available as a precompiled binary or from source\ as described on our\ utilities\ page.\ Example:\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/ga4kSv.bb -chrom=chr21 -start=0 -end=100000000 stdout.\
\\ The original VCF is available from the Children's Mercy Research Institute\ GA4K data release at\ \ github.com/ChildrensMercyResearchInstitute/GA4K.\
\ \Credits
\\ Thanks to the Children's Mercy Research Institute and the Genomic Answers\ for Kids participants and their families for making this dataset publicly\ available.\
\ \References
\ \ \\ Cohen ASA, Farrow EG, Abdelmoity AT, Alaimo JT, Amudhavalli SM, Anderson JT, Bansal L, Bartik L,\ Baybayan P, Belden B et al.\ \ Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes.\ Genet Med. 2022 Jun;24(6):1336-1348.\ PMID: 35305867\
\ \ varRep 1 bigDataUrl /gbdb/hg38/lrSv/ga4kSv.bb\ filter.AC 0:996\ filter.alleleFreq 0:1\ filter.carrierCount 1:498\ filter.insLen 0:14923\ filter.svLen 0:809711\ filterByRange.AC on\ filterByRange.alleleFreq on\ filterByRange.carrierCount on\ filterByRange.insLen on\ filterByRange.svLen on\ filterLabel.AC Allele Count (approx)\ filterLabel.alleleFreq Allele Frequency\ filterLabel.carrierCount Number of Carrier Samples\ filterLabel.insLen Insertion Length\ filterLabel.svLen SV Length\ filterLabel.svType SV Type\ filterLimits.alleleFreq 0:1\ filterType.svType multipleListOr\ filterValues.svType DEL,INS,DUP,INV\ itemRgb on\ longLabel Structural Variants from 502 Children's Mercy GA4K Probands (PacBio HiFi)\ mouseOver Var: $name ($svType)SV len: $svLen
Ins len: $insLen
AC (approx): $AC
AF: $alleleFreq
Carriers: $carrierCount/$sampleTotal\ parent longReadVariants\ shortLabel GA4K 502 SVs\ track ga4kSv\ type bigBed 9 +\ visibility hide\ gap Gap bed 3 + Gap Locations 0 100 0 0 0 127 127 127 0 0 0
Description
\\ This track shows the gaps in the GRCh38 (hg38) genome assembly defined in the\ AGP file delivered with the sequence. These gaps are being closed during the \ finishing process on the human genome. For information on the AGP file format, see the NCBI \ AGP Specification. The NCBI website also provides an \ overview of genome assembly procedures, as well as \ specific information about the hg38 assembly.\
\\ Gaps are represented as black boxes in this track.\ If the relative order and orientation of the contigs on either side\ of the gap is supported by read pair data, \ it is a bridged gap and a white line is drawn \ through the black box representing the gap. \
\This assembly contains the following principal types of gaps:\
- \
- short_arm - short arm gaps (count: 5; size range: 5,000,000 - 16,990,000 bases) \
- heterochromatin - heterochromatin gaps (count: 11; size range: 20,000 - 30,000,000 bases) \
- telomere - telomere gaps (count: 48; all of size 10,000 bases) \
- contig - gaps between contigs in scaffolds (count: 285; size range: 100 - 400,000 bases) \
- scaffold - gaps between scaffolds in chromosome assemblies (count: 470; size range: 10 - 624,000 bases) \
Description
\\ The GC percent track shows the percentage of G (guanine) and C (cytosine) bases\ in 5-base windows. High GC content is typically associated with\ gene-rich areas.\
\\ This track may be configured in a variety of ways to highlight different\ apsects of the displayed information. Click the\ "Graph configuration help"\ link for an explanation of the configuration options.\ \
Credits
\The data and presentation of this graph were prepared by\ Hiram Clawson.\
\ \ map 0 altColor 128,128,128\ autoScale Off\ color 0,0,0\ graphTypeDefault Bar\ gridDefault OFF\ group map\ html gc5Base\ longLabel GC Percent in 5-Base Windows\ maxHeightPixels 128:36:16\ shortLabel GC Percent\ track gc5BaseBw\ type bigWig 0 100\ viewLimits 30:70\ visibility hide\ windowingFunction Mean\ genCC GenCC bigBed 9 + 34 GenCC: The Gene Curation Coalition Annotations 0 100 0 0 0 127 127 127 0 0 0 https://search.thegencc.org/genes/$Description
\ \\ This track shows annotations from The Gene Curation Coalition (GenCC).\ The GenCC provides information pertaining to the validity of gene-disease relationships, \ with a current focus on Mendelian diseases. Curated gene-disease relationships are submitted \ by GenCC member organizations that currently provide online resources (e.g. ClinGen, DECIPHER, \ Orphanet, etc.), as well as diagnostic laboratories that have committed to sharing their internal \ curated gene-level knowledge (e.g. Ambry Genetics, Illumina, Invitae, etc.).
\\ The GenCC aims to clarify overlap between gene curation efforts and develop\ consistent terminology for validity, allelic requirement and mechanism\ of disease. Each item on this track corresponds with a gene, and contains\ a large number of information such as associated disease, evidence classification,\ specific submission notes and identifiers from different databases. In cases where\ multiple annotations exist for the same gene, multiple items are displayed.
\ \Display Conventions and Configuration
\\ Each item displayed represents a submission to the GenCC database. The displayed \ name is a combination of the gene symbol and the disease's original submission ID. \ This submission ID is either the OMIM#, MONDO# or Orphanet#. Clicking\ on any item will display the complete meta data for that item, including\ linkouts to the GenCC, NCBI, Ensembl, HGNC, GeneCards, Pombase (MONDO),\ and Human Phenotype Ontology (HPO). Mousing over any item will display the\ associated disease title, the classification title, and the mode of inheritance\ title.
\ \\ Items are colored based on the GenCC classification, or validation, of the\ evidence in the color scheme seen in the table below. \ For more information on this process, see the GenCC\ validity terms FAQ. A filter for the track is also available\ to display a subset of the items based on their classification.
\ \\
| Color | \Evidence classification | \
|---|---|
| Definitive | |
| Strong | |
| Moderate | |
| Supportive | |
| Limited | |
| Disputed Evidence | |
| Refuted Evidence | |
| No Known Disease Relationship |
\ Limitations: Most entries include both NM_ accessions as well as ENST and ENSG identifiers.\ From the original file, which contains no coordinates, two genes were not mapped\ to the hg38 genome, SLCO1B7 and ATXN8. This means that the hg38 track has 2 fewer items\ than what can be found in the GenCC download file. For hg19, one additional\ gene was not mapped, KCNJ18. In addition to this, the GenCC data in the Genome\ Browser does not include OMIM data due to licensing restrictions. For more\ information, see the Methods section below.
\ \Data Access
\\ The source data can be explored in \ GenCC database. The source files can also be found on the GenCC downloads page.
\ \\ The GenCC data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigBed\ files that can be downloaded from\ our download server.\ The data may also be explored interactively using our\ REST API.
\ \\
The file for this track may also be locally explored using our tools bigBedToBed \
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/genCC.bb stdout
Methods
\\ The data were downloaded from the GenCC downloads page in tsv format. Manual\ curation was performed on the file to remove newline characters and tab characters present in \ the submission notes, in total fewer than 20 manual edits were made.
\\ The track was first built on hg38 by associating the gene symbols with the NCBI MANE 1.0 \ release transcripts. These coordinates were added to the items as well as the NM_ accession,\ ENST ID and ENSG ID. For items where there was no gene symbol match in MANE (~130), the gene\ symbols were queried against GENCODEv40 comprehensive set release. In places where multiple\ transcript matches were found, the earliest transcription start and latest end site was used\ from among the transcripts to encompass the entire gene coordinates. Two genes were not able\ to be mapped for hg38, SLCO1B7 and ATXN8, resulting in two missing submissions in the Genome\ Browser when compared to the raw file. Lastly, the items were colored according to their\ evidence classification as seen on the GenCC database.
\\ For hg19, the hg38 NM_ accessions were used to convert the item coordinates according to the\ latest hg19 refseq release. For items that failed to convert, the gene symbols were queried\ using the GENCODEv40 hg19 lift comprehensive set. One additional gene symbol failed to map in\ hg19, KCNJ18, leading to 3 fewer items on this track when compared to the raw file.
\\ For both assemblies, GenCC OMIM data is excluded do to data restrictions.\ For complete documentation of the processing of these tracks, read the\ \ GenCC MakeDoc.
\ \Credits
\\ Thanks to the entire GenCC\ committee for creating these annotations and making them available.
\ \References
\\ DiStefano MT, Goehringer S, Babb L, Alkuraya FS, Amberger J, Amin M, Austin-Tse C, Balzotti M, Berg\ JS, Birney E et al.\ \ The Gene Curation Coalition: A global effort to harmonize gene-disease evidence resources.\ Genet Med. 2022 May 4;.\ PMID: 35507016\
\ phenDis 1 bigDataUrl /gbdb/hg38/bbi/genCC.bb\ filterLabel.classification_title evidence classification\ filterValues.classification_title Supportive,Strong,Definitive,Limited,Moderate,No Known Disease Relationship,Disputed Evidence,Refuted Evidence\ group phenDis\ itemRgb on\ longLabel GenCC: The Gene Curation Coalition Annotations\ mouseOver Disease title: $disease_titleClassification: $classification_title
MOI: $moi_title
Submitter: $sub_submitter_name\ shortLabel GenCC\ track genCC\ type bigBed 9 + 34\ url https://search.thegencc.org/genes/$
Description
\ \\ This super track contains previous versions of the GENCODE primary gene set.\ genes 1 group genes\ html ../../knownGeneArchive\ longLabel GENCODE Archive\ shortLabel GENCODE Archive\ superTrack on\ track knownGeneArchive\ type bed 6 +\ gencNcOrfsComprehensive GENCODE Phase II ncORFs Compr bigGenePred ncORFs: GENCODE Phase II non-canonical ORFs - comprehensive 3 100 0 0 0 127 127 127 0 0 0
Description
\ \\ The three Gencode ncORF tracks in the non-canonical ORF track container show \ non-canonical translated open reading frames (ncORFs) identified\ from ribosome profiling (Ribo-seq) data and mapped to the GENCODE annotation by the\ GENCODE / TransCODE consortium.\ The data is available in two phases:\
\ \Phase I
\\ The Phase I catalog contains 7,264 unique human ncORFs called from Ribo-seq data\ across seven publications and mapped to GENCODE v35. Only translations of 16 codons or above\ and initiating from ATG start codons were incorporated. Redundant sense-overlapping ORFs were\ merged. Of these, 3,085 ORFs were found by more than one publication, providing independent\ replication evidence. This catalog was developed as part of an effort to standardize the\ annotation of translated ORFs across reference databases including Ensembl/GENCODE, HGNC,\ UniProtKB, and PeptideAtlas.\
\ \Phase II
\\ The Phase II catalog nearly quadruples the Phase I set, defining 28,359 ncORFs in the\ Comprehensive set, mapped to GENCODE v45. Compared to Phase I, additional published\ Ribo-seq datasets were incorporated and the restrictions on ORF size and initiation codon\ were lifted.\
\ \\ Two subsets are provided for the Phase II data:\
\- \
- Comprehensive (28,359 ncORFs) – all mapped translations from the expanded catalog \
- Primary (10,127 ncORFs) – a high-confidence subset filtered for translations\ with especially robust translation signatures, as extrapolated from Ribo-seq data.\ These ncORFs demonstrate translation evidence comparable to canonical protein-coding genes. \
Display Conventions and Configuration
\ \\ All three GENCODE ncORF tracks are displayed in bigGenePred format and labeled with their\ ORF identifier. The default color scheme and available filter controls differ by track.\
\ \Phase I — Kozak strength colors (default)
\ \\ The Phase I track colors items by Kozak consensus strength by default.\ Two alternative color schemes can be selected from the track controls page\ (Color by dropdown): Evidence type and HLA class (see below).\
\ \| \ | Golden amber — Strong Kozak context. Both position −3 (A/G) and\ position +4 (G) match the consensus. | \
|---|---|
| \ | Steel blue — Moderate Kozak context. One of the two positions matches. | \
| \ | Gray — Weak Kozak context. Neither position matches. | \
| \ | Black — Non-ATG start codon (Kozak rule does not apply) or context\ unavailable. | \
Phase I — Evidence type colors (alternative)
\ \\ Select Color by: Evidence type to highlight peptide evidence from\ Deutsch et al. (see References). ORFs with no mass spectrometry evidence are gray.\
\ \| \ | Gold — TransCODE peptidein (628 ORFs). Confirmed as\ confidently translated by PeptideAtlas; candidate for peptidein annotation in\ reference databases. | \
|---|---|
| \ | Steel blue — HLA immunopeptidomics evidence only (1,373 ORFs). | \
| \ | Forest green — Non-HLA (whole-cell tryptic) evidence only (66 ORFs). | \
| \ | Orange — Both HLA and non-HLA evidence (35 ORFs). | \
| \ | Gray — No peptide evidence (5,114 ORFs) or in the peptidein set\ based on binding predictions only with no direct MS sequences (48 ORFs). | \
Phase I — HLA class colors (alternative)
\ \\ Select Color by: HLA class to color items by the HLA class in which peptides were\ detected:\
\ \| \ | Steel blue — Class I only (1,632 ORFs). | \
|---|---|
| \ | Crimson — Class II only (10 ORFs). | \
| \ | Orange — Both class I and class II (143 ORFs). | \
| \ | Gray — No HLA data (5,479 ORFs). | \
Phase I — Filters
\ \\ The Phase I track can be filtered by: start codon, Kozak strength, Kozak TE, replicated\ status, and — using the peptide evidence fields — peptidein status\ (isPeptidein), HLA class (hlaClass), HLA evidence tier\ (hlaFinalTier), HPP guideline category (hlaHppCategory), and Ribo-seq\ quality (riboseqQuality).\
\ \\ Mouseover for Phase I shows ORF name, host gene, Kozak strength and TE,\ replicated status, peptidein flag, HLA evidence tier, and HLA peptide count.\
\ \Phase II — colors and filters
\ \\ The Phase II Primary and Comprehensive tracks color items by Kozak strength using the\ same scheme as Phase I. Peptide evidence fields are not included in the Phase II tracks.\ Common filters: start codon, Kozak strength, Kozak TE.\
\ \Peptide evidence fields (Phase I only)
\ \\ Each Phase I item carries the following peptide evidence fields from Deutsch et al.\ (2026), accessible via the details page and Table Browser:\
\ \| Field | Description |
|---|---|
| isPeptidein | yes/no: ORF is in the PeptideAtlas peptidein set (Table S12) |
| hlaClass | HLA class(es) detected: I, II, or Both |
| hlaFinalTier | HLA evidence tier (Tier 1B = numerous peptides; Tier 2B = one peptide) |
| hlaHppCategory | HPP guideline category (HPP+, 1PepCandidate, Insufficient) |
| hlaNPeptides | Number of distinct HLA peptide sequences detected |
| riboseqQuality | Manual quality of Ribo-seq evidence (Excellent/Sufficient/Insufficient) |
| hlaIPeptides | HLA class I peptide sequences (comma-separated) |
| hlaIIPeptides | HLA class II peptide sequences (comma-separated) |
| nonHlaFinalTier | Non-HLA (tryptic proteomics) evidence tier |
| nonHlaHppCategory | Non-HLA HPP guideline category |
| nonHlaNPeptides | Number of distinct non-HLA peptide sequences |
| nonHlaPeptides | Non-HLA tryptic peptide sequences (comma-separated) |
Data Access
\ \\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. The data can be accessed from\ scripts through our API; the track names are\ "gencNcOrfs" (Phase I), "gencNcOrfsPrimary" (Phase II Primary),\ and "gencNcOrfsComprehensive" (Phase II Comprehensive).\
\ \\ For automated download and analysis, the genome annotations are stored in bigBed files that\ can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\
\ \Methods
\ \Phase I Ribo-seq catalog
\ \\ Mudge et al. (2022, see References) consolidated translation evidence from seven published\ ribosome profiling datasets that used harringtonine or lactimidomycin treatment to enrich\ for translation initiation sites. Ribo-seq reads were mapped to the GENCODE v35 annotation\ on GRCh38. Only ATG-initiated ORFs of at least 16 codons were retained, and redundant\ sense-overlapping ORFs were merged by taking the longest representative, yielding 7,264\ ncORFs across five biotype classes: upstream ORFs (uORFs), downstream ORFs (dORFs),\ intronic ORFs (intORFs), pseudogenic translations (PT), and lncRNA-embedded ORFs.\ The catalog was developed as part of a reference-database coordination effort involving\ Ensembl/GENCODE, HGNC, UniProtKB, and PeptideAtlas.\
\ \Phase II Ribo-seq catalog
\ \\ Chothani et al. (2025, see References) expanded the catalog by incorporating additional\ Ribo-seq datasets across more cell types and tissues and mapping to GENCODE v45. The\ ATG-start codon and 16-codon length restrictions were lifted to capture near-cognate\ initiations and micropeptides. A data-driven scoring framework using ribosome occupancy\ uniformity and P-site in-frame fraction identified a Primary subset of 10,127 ncORFs with\ translation signatures comparable to canonical coding genes; the Comprehensive set contains\ all 28,359 mapped ORFs.\
\ \Kozak strength and translational efficiency
\ \\ Each ORF was annotated with its Kozak consensus strength by fetching the 11-base genomic\ context around the start codon from hg38.2bit and classifying positions −3 and +4\ relative to the A of the start codon: both matching (A/G at −3 and G at +4) =\ Strong; one matching = Moderate; neither = Weak; non-ATG start = non-ATG. A numeric\ translational efficiency (TE) score was also assigned by looking up the 11-base context in\ the Noderer 2014 TE table (Mol Syst Biol 10:748, PMID 25170020).\
\ \Peptide evidence and peptideins
\ \\ Deutsch et al. (2026, see References) queried the 7,264 Phase I ORFs against two independent\ PeptideAtlas mass spectrometry repositories. The HLA immunopeptidomics build was constructed\ from HLA-I and HLA-II peptidomes across more than 100 HLA-typed donors spanning multiple\ tissue types and cancer cell lines; peptides were enriched by affinity purification and\ identified by tandem mass spectrometry. The whole-cell tryptic proteomics build used\ conventional shotgun proteomics from a broad range of cell lines and tissues. Spectra\ were manually reviewed and classified according to the Prensner et al. tier system (Tier 1B =\ numerous HPP-quality HLA peptides; Tier 2B = a single qualifying HLA peptide; Tier 1A/2A =\ additional non-HLA evidence). The study introduced the term peptidein for a\ translation product detectable by mass spectrometry but not yet annotatable as a protein due\ to absent functional evidence. Of the 7,264 Phase I ORFs, 628 passed PeptideAtlas curation\ as peptideins (Table S12); a further 1,522 have HLA or tryptic peptide evidence below the\ peptidein threshold.\
\ \\
The supplementary data tables (Tables S2, S3, S6, S7, and S12) from Deutsch et al. were\
downloaded from the paper's supplementary materials at\
\
https://doi.org/10.1038/s41586-026-10459-x.\
Each table was joined to the Phase I bigGenePred by the short ORF identifier (e.g.,\
c14riboseqorf80) using the script\
addPeptideEvidence.py.\
The script appended 14 new fields to all 7,264 Phase I items; the 5,114 ORFs without peptide\
evidence receive default empty values so they remain visible in the track and filterable on\
isPeptidein and related fields. Non-HLA peptides that map to known proteins or\
are too short to be informative were excluded (Tables S2, exclude column).\
The complete build procedure is documented in\
ncOrfs.txt.\
Credits
\ \\ Thanks to Jonathan Mudge, Jorge Ruiz-Orera, John Prensner, Sebastiaan van Heesch, and the\ GENCODE / TransCODE consortium for creating and maintaining these annotations.\
\ \References
\ \\ Deutsch EW, Kok LW, Mudge JM, Valls CF, Jungreis I, Ruiz-Orera J, Sun Z, Kusebauch U, Fierro-Monti\ I, Abelin JG et al.\ \ Expanding the human proteome with microproteins and peptideins.\ Nature. 2026 May 6;.\ PMID: 42092140\
\ \\
Chothani S, Ruiz-Orera J, Tierney JAS, Clauwaert J, Deutsch EW, Alba MM, Aspden JL, Baranov PV,\
Bazzini AA, Bruford EA et al.\
\
An expanded reference catalog of translated open reading frames for biomedical research.\
bioRxiv. 2025 Jul 7;.\
PMID: 40672165; PMC:
\
Mudge JM, Ruiz-Orera J, Prensner JR, Brunet MA, Calvet F, Jungreis I, Gonzalez JM, Magrane M,\
Martinez TF, Schulz JF et al.\
\
Standardized annotation of translated open reading frames.\
Nat Biotechnol. 2022 Jul;40(7):994-999.\
PMID: 35831657; PMC:
Start codon: $startCodon
Kozak: $kozakStrength (TE $kozakTE)\ parent ncOrfs\ shortLabel GENCODE Phase II ncORFs Compr\ track gencNcOrfsComprehensive\ type bigGenePred\ visibility pack\ gencNcOrfsPrimary GENCODE Phase II ncORFs Prim bigGenePred ncORFs: GENCODE Phase II non-canonical ORFs - primary 3 100 0 0 0 127 127 127 0 0 0
Description
\ \\ The three Gencode ncORF tracks in the non-canonical ORF track container show \ non-canonical translated open reading frames (ncORFs) identified\ from ribosome profiling (Ribo-seq) data and mapped to the GENCODE annotation by the\ GENCODE / TransCODE consortium.\ The data is available in two phases:\
\ \Phase I
\\ The Phase I catalog contains 7,264 unique human ncORFs called from Ribo-seq data\ across seven publications and mapped to GENCODE v35. Only translations of 16 codons or above\ and initiating from ATG start codons were incorporated. Redundant sense-overlapping ORFs were\ merged. Of these, 3,085 ORFs were found by more than one publication, providing independent\ replication evidence. This catalog was developed as part of an effort to standardize the\ annotation of translated ORFs across reference databases including Ensembl/GENCODE, HGNC,\ UniProtKB, and PeptideAtlas.\
\ \Phase II
\\ The Phase II catalog nearly quadruples the Phase I set, defining 28,359 ncORFs in the\ Comprehensive set, mapped to GENCODE v45. Compared to Phase I, additional published\ Ribo-seq datasets were incorporated and the restrictions on ORF size and initiation codon\ were lifted.\
\ \\ Two subsets are provided for the Phase II data:\
\- \
- Comprehensive (28,359 ncORFs) – all mapped translations from the expanded catalog \
- Primary (10,127 ncORFs) – a high-confidence subset filtered for translations\ with especially robust translation signatures, as extrapolated from Ribo-seq data.\ These ncORFs demonstrate translation evidence comparable to canonical protein-coding genes. \
Display Conventions and Configuration
\ \\ All three GENCODE ncORF tracks are displayed in bigGenePred format and labeled with their\ ORF identifier. The default color scheme and available filter controls differ by track.\
\ \Phase I — Kozak strength colors (default)
\ \\ The Phase I track colors items by Kozak consensus strength by default.\ Two alternative color schemes can be selected from the track controls page\ (Color by dropdown): Evidence type and HLA class (see below).\
\ \| \ | Golden amber — Strong Kozak context. Both position −3 (A/G) and\ position +4 (G) match the consensus. | \
|---|---|
| \ | Steel blue — Moderate Kozak context. One of the two positions matches. | \
| \ | Gray — Weak Kozak context. Neither position matches. | \
| \ | Black — Non-ATG start codon (Kozak rule does not apply) or context\ unavailable. | \
Phase I — Evidence type colors (alternative)
\ \\ Select Color by: Evidence type to highlight peptide evidence from\ Deutsch et al. (see References). ORFs with no mass spectrometry evidence are gray.\
\ \| \ | Gold — TransCODE peptidein (628 ORFs). Confirmed as\ confidently translated by PeptideAtlas; candidate for peptidein annotation in\ reference databases. | \
|---|---|
| \ | Steel blue — HLA immunopeptidomics evidence only (1,373 ORFs). | \
| \ | Forest green — Non-HLA (whole-cell tryptic) evidence only (66 ORFs). | \
| \ | Orange — Both HLA and non-HLA evidence (35 ORFs). | \
| \ | Gray — No peptide evidence (5,114 ORFs) or in the peptidein set\ based on binding predictions only with no direct MS sequences (48 ORFs). | \
Phase I — HLA class colors (alternative)
\ \\ Select Color by: HLA class to color items by the HLA class in which peptides were\ detected:\
\ \| \ | Steel blue — Class I only (1,632 ORFs). | \
|---|---|
| \ | Crimson — Class II only (10 ORFs). | \
| \ | Orange — Both class I and class II (143 ORFs). | \
| \ | Gray — No HLA data (5,479 ORFs). | \
Phase I — Filters
\ \\ The Phase I track can be filtered by: start codon, Kozak strength, Kozak TE, replicated\ status, and — using the peptide evidence fields — peptidein status\ (isPeptidein), HLA class (hlaClass), HLA evidence tier\ (hlaFinalTier), HPP guideline category (hlaHppCategory), and Ribo-seq\ quality (riboseqQuality).\
\ \\ Mouseover for Phase I shows ORF name, host gene, Kozak strength and TE,\ replicated status, peptidein flag, HLA evidence tier, and HLA peptide count.\
\ \Phase II — colors and filters
\ \\ The Phase II Primary and Comprehensive tracks color items by Kozak strength using the\ same scheme as Phase I. Peptide evidence fields are not included in the Phase II tracks.\ Common filters: start codon, Kozak strength, Kozak TE.\
\ \Peptide evidence fields (Phase I only)
\ \\ Each Phase I item carries the following peptide evidence fields from Deutsch et al.\ (2026), accessible via the details page and Table Browser:\
\ \| Field | Description |
|---|---|
| isPeptidein | yes/no: ORF is in the PeptideAtlas peptidein set (Table S12) |
| hlaClass | HLA class(es) detected: I, II, or Both |
| hlaFinalTier | HLA evidence tier (Tier 1B = numerous peptides; Tier 2B = one peptide) |
| hlaHppCategory | HPP guideline category (HPP+, 1PepCandidate, Insufficient) |
| hlaNPeptides | Number of distinct HLA peptide sequences detected |
| riboseqQuality | Manual quality of Ribo-seq evidence (Excellent/Sufficient/Insufficient) |
| hlaIPeptides | HLA class I peptide sequences (comma-separated) |
| hlaIIPeptides | HLA class II peptide sequences (comma-separated) |
| nonHlaFinalTier | Non-HLA (tryptic proteomics) evidence tier |
| nonHlaHppCategory | Non-HLA HPP guideline category |
| nonHlaNPeptides | Number of distinct non-HLA peptide sequences |
| nonHlaPeptides | Non-HLA tryptic peptide sequences (comma-separated) |
Data Access
\ \\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. The data can be accessed from\ scripts through our API; the track names are\ "gencNcOrfs" (Phase I), "gencNcOrfsPrimary" (Phase II Primary),\ and "gencNcOrfsComprehensive" (Phase II Comprehensive).\
\ \\ For automated download and analysis, the genome annotations are stored in bigBed files that\ can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\
\ \Methods
\ \Phase I Ribo-seq catalog
\ \\ Mudge et al. (2022, see References) consolidated translation evidence from seven published\ ribosome profiling datasets that used harringtonine or lactimidomycin treatment to enrich\ for translation initiation sites. Ribo-seq reads were mapped to the GENCODE v35 annotation\ on GRCh38. Only ATG-initiated ORFs of at least 16 codons were retained, and redundant\ sense-overlapping ORFs were merged by taking the longest representative, yielding 7,264\ ncORFs across five biotype classes: upstream ORFs (uORFs), downstream ORFs (dORFs),\ intronic ORFs (intORFs), pseudogenic translations (PT), and lncRNA-embedded ORFs.\ The catalog was developed as part of a reference-database coordination effort involving\ Ensembl/GENCODE, HGNC, UniProtKB, and PeptideAtlas.\
\ \Phase II Ribo-seq catalog
\ \\ Chothani et al. (2025, see References) expanded the catalog by incorporating additional\ Ribo-seq datasets across more cell types and tissues and mapping to GENCODE v45. The\ ATG-start codon and 16-codon length restrictions were lifted to capture near-cognate\ initiations and micropeptides. A data-driven scoring framework using ribosome occupancy\ uniformity and P-site in-frame fraction identified a Primary subset of 10,127 ncORFs with\ translation signatures comparable to canonical coding genes; the Comprehensive set contains\ all 28,359 mapped ORFs.\
\ \Kozak strength and translational efficiency
\ \\ Each ORF was annotated with its Kozak consensus strength by fetching the 11-base genomic\ context around the start codon from hg38.2bit and classifying positions −3 and +4\ relative to the A of the start codon: both matching (A/G at −3 and G at +4) =\ Strong; one matching = Moderate; neither = Weak; non-ATG start = non-ATG. A numeric\ translational efficiency (TE) score was also assigned by looking up the 11-base context in\ the Noderer 2014 TE table (Mol Syst Biol 10:748, PMID 25170020).\
\ \Peptide evidence and peptideins
\ \\ Deutsch et al. (2026, see References) queried the 7,264 Phase I ORFs against two independent\ PeptideAtlas mass spectrometry repositories. The HLA immunopeptidomics build was constructed\ from HLA-I and HLA-II peptidomes across more than 100 HLA-typed donors spanning multiple\ tissue types and cancer cell lines; peptides were enriched by affinity purification and\ identified by tandem mass spectrometry. The whole-cell tryptic proteomics build used\ conventional shotgun proteomics from a broad range of cell lines and tissues. Spectra\ were manually reviewed and classified according to the Prensner et al. tier system (Tier 1B =\ numerous HPP-quality HLA peptides; Tier 2B = a single qualifying HLA peptide; Tier 1A/2A =\ additional non-HLA evidence). The study introduced the term peptidein for a\ translation product detectable by mass spectrometry but not yet annotatable as a protein due\ to absent functional evidence. Of the 7,264 Phase I ORFs, 628 passed PeptideAtlas curation\ as peptideins (Table S12); a further 1,522 have HLA or tryptic peptide evidence below the\ peptidein threshold.\
\ \\
The supplementary data tables (Tables S2, S3, S6, S7, and S12) from Deutsch et al. were\
downloaded from the paper's supplementary materials at\
\
https://doi.org/10.1038/s41586-026-10459-x.\
Each table was joined to the Phase I bigGenePred by the short ORF identifier (e.g.,\
c14riboseqorf80) using the script\
addPeptideEvidence.py.\
The script appended 14 new fields to all 7,264 Phase I items; the 5,114 ORFs without peptide\
evidence receive default empty values so they remain visible in the track and filterable on\
isPeptidein and related fields. Non-HLA peptides that map to known proteins or\
are too short to be informative were excluded (Tables S2, exclude column).\
The complete build procedure is documented in\
ncOrfs.txt.\
Credits
\ \\ Thanks to Jonathan Mudge, Jorge Ruiz-Orera, John Prensner, Sebastiaan van Heesch, and the\ GENCODE / TransCODE consortium for creating and maintaining these annotations.\
\ \References
\ \\ Deutsch EW, Kok LW, Mudge JM, Valls CF, Jungreis I, Ruiz-Orera J, Sun Z, Kusebauch U, Fierro-Monti\ I, Abelin JG et al.\ \ Expanding the human proteome with microproteins and peptideins.\ Nature. 2026 May 6;.\ PMID: 42092140\
\ \\
Chothani S, Ruiz-Orera J, Tierney JAS, Clauwaert J, Deutsch EW, Alba MM, Aspden JL, Baranov PV,\
Bazzini AA, Bruford EA et al.\
\
An expanded reference catalog of translated open reading frames for biomedical research.\
bioRxiv. 2025 Jul 7;.\
PMID: 40672165; PMC:
\
Mudge JM, Ruiz-Orera J, Prensner JR, Brunet MA, Calvet F, Jungreis I, Gonzalez JM, Magrane M,\
Martinez TF, Schulz JF et al.\
\
Standardized annotation of translated open reading frames.\
Nat Biotechnol. 2022 Jul;40(7):994-999.\
PMID: 35831657; PMC:
Start codon: $startCodon
Kozak: $kozakStrength (TE $kozakTE)\ parent ncOrfs\ shortLabel GENCODE Phase II ncORFs Prim\ track gencNcOrfsPrimary\ type bigGenePred\ visibility pack\ wgEncodeGencodeSuper GENCODE Versions Container of all new and previous GENCODE releases 0 100 0 0 0 127 127 127 0 0 0 \
Description
\\ The aim of the GENCODE \ Genes project (Harrow et al., 2006) is to produce a set of \ highly accurate annotations of evidence-based gene features on the human reference genome.\ This includes the identification of all protein-coding loci with associated\ alternative splice variants, non-coding with transcript evidence in the public \ databases (NCBI/EMBL/DDBJ) and pseudogenes. A high quality set of gene\ structures is necessary for many research studies such as comparative or \ evolutionary analyses, or for experimental design and interpretation of the \ results.
\\ The GENCODE Genes tracks display the high-quality manual annotations merged \ with evidence-based automated annotations across the entire\ human genome. The GENCODE gene set presents a full merge\ between HAVANA manual annotation and Ensembl automatic annotation.\ Priority is given to the manually curated HAVANA annotation using predicted\ Ensembl annotations when there are no corresponding manual annotations. With \ each release, there is an increase in the number of annotations that have undergone\ manual curation. \ This annotation was carried out on the GRCh38 (hg38) genome assembly.\
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions
\\ These are multi-view composite tracks that contain differing data sets\ (views). Instructions for configuring multi-view tracks are\ here.\ Only some subtracks are shown by default. The user can select which subtracks\ are displayed via the display controls on the track details pages.\ Further details on display conventions and data interpretation are available in the track descriptions.
\ \Data access
\\ GENCODE Genes and its associated tables can be explored interactively using the\ REST API, the\ Table Browser or the\ Data Integrator.\ The GENCODE data files for hg38 are available in our\ \ downloads directory as wgEncodeGencode* files in genePred format.\ All the tables can also be queried directly from our public MySQL\ servers, with instructions on this method available on our\ MySQL help page as well as on\ our blog.
\ \Release Notes
\\ GENCODE version 49\ corresponds to Ensembl 115.\
\\ GENCODE version 48\ corresponds to Ensembl 114.\
\ GENCODE version 47\ corresponds to Ensembl 113.\ \\ GENCODE version 46\ corresponds to Ensembl 112.\
\\ GENCODE version 45\ corresponds to Ensembl 111.\
\\ GENCODE version 44\ corresponds to Ensembl 110.\
\\ GENCODE version 43\ corresponds to Ensembl 109.\
\\ GENCODE version 42\ corresponds to Ensembl 108.\
\\ GENCODE version 41\ corresponds to Ensembl 107.\
\\ GENCODE version 40\ corresponds to Ensembl 106.\
\\ GENCODE version 39\ corresponds to Ensembl 105.\
\\ GENCODE version 38\ corresponds to Ensembl 104.\
\\ GENCODE version 37\ corresponds to Ensembl 103.\
\\ GENCODE version 36\ corresponds to Ensembl 102.\
\\ GENCODE version 35\ corresponds to Ensembl 101.\
\\ GENCODE version 34\ corresponds to Ensembl 100.\
\\ GENCODE version 33\ corresponds to Ensembl 99.\
\\ GENCODE version 30\ corresponds to Ensembl 96.\
\\ GENCODE version 29\ corresponds to Ensembl 94.\
\\ GENCODE version 28\ corresponds to Ensembl 92.\
\\ GENCODE version 27\ corresponds to Ensembl 90.\
\\ GENCODE version 26\ corresponds to Ensembl 88.\
\\ GENCODE version 24\ corresponds to Ensembl 84.\
\ GENCODE version 23\ corresponds to Ensembl 81.\ \ GENCODE version 22\ corresponds to Ensembl 79.\ \ GENCODE version 20\ corresponds to Ensembl 76.\ \\ See also: The GENCODE Project Release History.\
\ \Credits
\The GENCODE project is an international collaboration funded by NIH/NHGRI\ grant U41HG007234. More information is available\ at www.gencodegenes.org,\ Participating GENCODE institutions and personnel can be found\ \ here.\
\ \References
\\ Frankish A, Diekhans M, Jungreis I, Lagarde J, Loveland JE, Mudge JM, Sisu C, Wright JC, Armstrong\ J, Barnes I et al.\ \ GENCODE 2021.\ Nucleic Acids Res. 2021 Jan 8;49(D1):D916-D923.\ PMID: 33270111;\ PMC: PMC7778937;\ DOI: 10.1093/nar/gkaa1087\
\ \ \A full list of GENCODE publications are available\ at The GENCODE\ Project web site.\
\ \Data Release Policy
\GENCODE data are available for use without restrictions.
\ \ genes 0 group genes\ longLabel Container of all new and previous GENCODE releases\ shortLabel GENCODE Versions\ superTrack on\ track wgEncodeGencodeSuper\ trackHandler wgEncodeGencode\ interactions Gene Interactions bigBed 9 Protein Interactions from Curated Databases and Text-Mining 0 100 0 0 0 127 127 127 0 0 0Description
\\ The Pathways and Gene Interactions track shows a summary of gene interaction and pathway data\ collected from two sources: curated pathway/protein-interaction databases and interactions found\ through text mining of PubMed abstracts.
\ \Display Conventions and Configuration
\Track Display
\\ The track features a single item for each gene loci in the genome. On the item itself, the gene\ symbol for the loci is displayed followed by the top gene interactions noted by their gene symbol.\ Clicking an item will take you a\ gene interaction graph\ that includes detailed information on the support for the various interactions.
\ \\ Items are colored based on the number of documents supporting the interactions of a\ particular gene. Genes with >100 supporting documents are colored\ black, genes with >10 but <100\ supporting documents are colored dark blue, and\ those with >10 supporting documents are colored\ light blue.
\ \Pathway and Gene Interaction Display
\\ See the\ help documentation\ accompanying this gene interaction graph for more information on its configuration.
\ \Methods
\\ The pathways and gene interactions were imported from a number of databases and mined from\ millions of PubMed abstracts. More information can be found in the\ "Data Sources\ and Methods"\ section of the help page for the gene interaction graph.
\ \Data Access
\\ The underlying data for this track can be accessed interactively through the\ Table Browser or\ Data Integrator. \ The data for this track is spread across a number of relational tables. The best way to \ export or analyze the data is using our public MySQL server.\ The list of tables and how they are linked together are described in the \ documentation \ linked at the bottom of the gene interaction viewer.\
\ \\ The genome annotation is just a summary of the actual interactions database and therefore often not \ of interest to most users. It is stored in a bigBed file that can be obtained\ from the\ download server.\ \ The data underlying the\ graphical display is in bigBed\ formatted file named interactions.bb. Individual regions or the whole genome annotation\ can be obtained using our tool bigBedToBed. Instructions\ for downloading source code and precompiled binaries can be found\ here. The tool can also\ be used to obtain only features within a given range, for example:\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/interactions.bb\ -chrom=chr6 -start=0 -end=1000000 stdout\
\ \Credits
\\ The text-mined data for the gene interactions and pathways were generated by Chris Quirk and\ Hoifung Poon as part of\ Microsoft Research, Project\ Hanover.
\ \\ Pathway data was provided by the databases listed under\ "Data Sources\ and Methods"\ section of the help page for the gene interaction graph.\ In particular, thank you to Ian Donaldson from IRef for his\ unique collection of interaction databases.
\ \\ The short gene descriptions are a merge of the HPRD\ and PantherDB gene/molecule classifications. Thanks to Arun Patil from\ HPRD for making them available as a download.
\ \\ The track display and gene interaction graph\ were developed at the UCSC Genome Browser by Max Haeussler.
\ \References
\\ Poon H, Quirk C, DeZiel C, Heckerman D.\ Literome: PubMed-scale genomic knowledge base in the cloud\ Bioinformatics. 2014 Oct;30(19):2840-2.\ PMID: 24939151
\ phenDis 1 bigDataUrl /gbdb/hg38/bbi/interactions.bb\ directUrl hgGeneGraph?db=hg38&gene=%s\ exonNumbers off\ group phenDis\ hgsid on\ itemRgb on\ labelOnFeature on\ linkIdInName on\ longLabel Protein Interactions from Curated Databases and Text-Mining\ noScoreFilter on\ shortLabel Gene Interactions\ track interactions\ type bigBed 9\ visibility hide\ ghGeneTss Gene TSS bigBed 9 GeneHancer Regulatory Elements and Gene Interactions 3 100 0 0 0 127 127 127 0 0 0 http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$ regulation 1 itemRgb on\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ parent geneHancer\ searchIndex name\ shortLabel Gene TSS\ track ghGeneTss\ type bigBed 9\ url http://www.genecards.org/cgi-bin/carddisp.pl?gene=$$\ urlLabel In GeneCards:\ view b_TSS\ visibility pack\ geneHancer GeneHancer bed 3 GeneHancer Regulatory Elements and Gene Interactions 0 100 0 0 0 127 127 127 0 0 0Description
\\ GeneHancer is a database of human regulatory elements (enhancers and promoters) \ and their inferred target genes, which is embedded \ in GeneCards, a human gene \ compendium.\ The GeneHancer database was created by integrating >1 million regulatory elements \ from multiple genome-wide databases. \ Associations between the regulatory elements and target genes\ were based on multiple sources of linking molecular data, along with distance,\ as described in Methods below.\
\\ The GeneHancer track set contains tracks representing:\
- \
- Regulatory elements (GeneHancers) \
- Gene transcription start sites \
- Interactions (associations) between regulatory elements and genes \
- Clustered interactions, by gene target or GeneHancer \
Display Conventions
\\ Each GeneHancer regulatory element is identified by a GeneHancer id. \ For example: GH0XJ101383 is located on chromosome X, with starting position of 101,383 kb\ (GRCh38/hg38 reference).\ Based on the id, one can obtain full GeneHancer information, as displayed in the Genomics \ section within the gene-centric web pages of GeneCards. Links to the GeneCards information pages\ are provided on the track details pages.
\ \\ For the interaction tracks (Clusters and Interactions) a slight offset can be noticed between \ the line endpoints. This helps to identify the start and end of the feature. In this case,\ the higher point is the source (enhancers) and the lower point is the target.
\ \Regulatory elements
\\ Colors are used to distinguish promoters and enhancers and to indicate the GeneHancer element confidence score:
\\ Promoters: \ High\ Medium\ Low\
\\ Enhancers: \ High\ Medium\ Low\
\ \Gene TSS
\\ Colors are used to improve gene and interactions visibility. \ Successive genes are colored in different colors, and interactions of a gene have the same color.
\ \Interactions
\\ The Interactions view in Full mode shows GeneHancers and target genes connected by curves or \ half-rectangles (when one of the connected regions is off-screen). \ Configuration options are available to change the drawing style, and to limit the view to\ interactions with one or both connected items in the region.\ Interactions are identified on mouseover or clicked on for details at the end regions, or at \ the curve peak, which is marked with a gray ring shape. Interactions in the reverse direction\ (Gene TSS precedes GeneHancer on the genome) are drawn with a dashed line.\ \
Clusters
\\ The Clusters view groups interactions by target gene; the target gene and all GeneHancers \ associated with it are displayed in a single browser item. The gene TSS and associated GeneHancers \ are shown as blocks linked together, with the TSS drawn as a "tall" item, and the \ GeneHancers drawn "short". \ A user configuration option is provided to change the view to group by GeneHancer \ (with tall GeneHancer and short TSS's). \ Clusters composed of interactions with a single gene are colored to correspond to the gene, \ and those composed of interactions with multiple genes are colored dark gray.
\ \Methods
\\ GeneHancer identifications were created from >1 million regulatory elements \ obtained from seven genome-wide databases:\
- \
- ENCODE project\ Z-Lab Enhancer-like regions (version v3) \
- Ensembl regulatory build (version 92) \
- FANTOM5 atlas of active enhancers \
- VISTA Enhancer Browser \
- dbSUPER super-enhancers \
- EPDnew promoters \
- UCNEbase ultra-conserved noncoding elements \
\ Employing an integration algorithm that removes redundancy, the GeneHancer pipeline\ identified ˜250k integrated candidate regulatory elements (GeneHancers).\ Each GeneHancer is assigned an annotation-derived confidence score. \ The GeneHancers that are derived from more than one information source are defined \ as "elite" GeneHancers.
\\ Gene-GeneHancer associations, and their likelihood-based scores, were generated \ using information that helps link regulatory elements to genes:\
- \
- eQTLs (expression quantitative trait loci) from GTEx (version v6p) \
- Capture Hi-C promoter-enhancer long range interactions \
- FANTOM5 eRNA-gene expression correlations \
- Cross-tissue expression correlations between a transcription factor interacting \ with a GeneHancer and a candidate target gene \
- Distance-based associations, including several approaches: \
- \
- Nearest neighbors, where each GeneHancer is associated with its two proximal genes \
- Overlaps with the gene territory (intragenic) \
- Proximity to the gene TSS (<2kb) \
\ Associations that are derived from more than one information source are defined \ as "elite" associations, which leads to the definition of the "double elite"\ dataset - elite gene associations of elite GeneHancers.
\\ More details are provided at the GeneCards\ \ information page.\ For a full description of the methods used, refer to the GeneHancer manuscript1.
\\ Source data for the GeneHancer version 4.8 was downloaded during May 2018.
\ \Data Access
\\ Due to our agreement with the Weizmann Institute, we cannot allow full genome \ queries from the Table Browser or share download files. You can still access \ data for individual chromosomes or positional data from the \ Table Browser.
\ \\ GeneHancer is the property of the Weizmann Institute of Science and \ is not available for download or mirroring by any third party \ without permission. Please contact the Weizmann Institute directly for \ data inquiries.
\ \Credits
\\ Thanks to Simon Fishilevich, Marilyn Safran, Naomi Rosen, and Tsippi Iny Stein of the GeneCards \ group and Shifra Ben-Dor of the Bioinformatics Core group at the Weizmann Institute, \ for providing this data and documentation, creating track hub versions of these tracks \ as prototypes, and overall responsiveness during development of these tracks.
\\ Contact: \ simon.\ fishilevich@weizmann.\ ac.\ il\ \
\ Supported in part by a grant from LifeMap Sciences Inc.
\ \References
\\ Fishilevich S., Nudel R., Rappaport N., Hadar R., Plaschkes I., Iny Stein T., Rosen N., Kohn A., Twik M., Safran M., Lancet D. and Cohen D. GeneHancer: genome-wide integration of enhancers and target genes in GeneCards, Database (Oxford) (2017), doi:10.1093/database/bax028. [PDF] PMID 28605766
\\ Stelzer G, Rosen R, Plaschkes I, Zimmerman S, Twik M, Fishilevich S, Iny Stein T, Nudel R, Lieder I, Mazor Y, Kaplan S, Dahary, D, Warshawsky D, Guan- Golan Y, Kohn A, Rappaport N, Safran M, and Lancet D. The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analysis, Current Protocols in Bioinformatics (2016), 54:1.30.1-1.30.33. doi: 10.1002/cpbi.5. PMID 27322403
\ regulation 1 compositeTrack on\ dataVersion January 2019 (V2: Corrections to Experiment field)\ dimensions dimX=set dimY=view\ group regulation\ longLabel GeneHancer Regulatory Elements and Gene Interactions\ shortLabel GeneHancer\ sortOrder set=+ view=+\ subGroup1 view View a_GH=Regulatory_Elements b_TSS=Gene_TSS c_I=Interactions d_I=Clusters\ subGroup2 set Set a_ELITE=Double_Elite b_ALL=All\ tableBrowser noGenome\ track geneHancer\ type bed 3\ visibility hide\ geneid Geneid Genes genePred geneidPep Geneid Gene Predictions 0 100 0 90 100 127 172 177 0 0 0Description
\ \\ This track shows gene predictions from the\ geneid program developed by\ Roderic Guigó's Computational Biology of RNA Processing\ group which is part of the\ Centre de Regulació Genòmica\ (CRG) in Barcelona, Catalunya, Spain.\
\ \Methods
\ \\ Geneid is a program to predict genes in anonymous genomic sequences designed\ with a hierarchical structure. In the first step, splice sites, start and stop\ codons are predicted and scored along the sequence using Position Weight Arrays\ (PWAs). Next, exons are built from the sites. Exons are scored as the sum of the\ scores of the defining sites, plus the log-likelihood ratio of a\ Markov Model for coding DNA. Finally, from the set of predicted exons, the gene\ structure is assembled, maximizing the sum of the scores of the assembled exons.\
\ \Credits
\ \\ Thanks to Computational Biology of RNA Processing\ for providing these data.\ \
\ \References
\\ Blanco E, Parra G, Guigó R.\ Using geneid to identify genes.\ Curr Protoc Bioinformatics. 2007 Jun;Chapter 4:Unit 4.3.\ PMID: 18428791\
\ \ \\
Parra G, Blanco E, Guigó R.\
\
GeneID in Drosophila.\
Genome Res. 2000 Apr;10(4):511-5.\
PMID: 10779490; PMC:
Description
\ \\ GeneReviews is an online collection of expert-authored, peer-reviewed\ articles that describe specific gene-related diseases. GeneReviews articles are\ searchable by disease name, gene symbol, protein name, author, or title. GeneReviews\ is supported by the National Institutes of Health, hosted at NCBI as part of the\ \ Genetic Testing Registry (GTR). The GeneReviews data underlying this track will be updated frequently. \
\ \The GeneReviews track allows the user to locate the NCBI GeneReviews resource\ quickly from the Genome Browser. Hovering the mouse on track items shows the gene symbol and \ associated diseases. A condensed version of the GeneReviews article\ name and its related diseases are displayed on the item details page as links. Similar\ information, when available, is provided in the details page of items from the UCSC Genes,\ RefSeq Genes, and OMIM Genes tracks.\
\ \Data Access
\\ The raw data for the GeneReviews track can be explored interactively with the\ Table Browser. Cross-referencing can be done with\ Data Integrator. The complete source file,\ in bigBed format, \ can be downloaded from our\ downloads directory.\ For automated analysis,\ the data may be queried from our\ REST API.\
\ \\ Previous versions of this track can be found on our archive download server.\
\ \References
\ \\ Pagon RA, Adam MP, Bird TD, et al., editors. GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2014. Available from: \ \ https://www.ncbi.nlm.nih.gov/books/NBK1116.\
\ \ phenDis 1 bigDataUrl /gbdb/hg38/geneReviews/geneReviews.bb\ color 0, 80, 0\ group phenDis\ html geneReviews\ longLabel GeneReviews\ mouseOver Gene: $nameCount: $diseaseCount
Disease(s): $diseases
\ noScoreFilter on\ shortLabel GeneReviews\ track geneReviews\ type bigBed 9 +\ url https://www.ncbi.nlm.nih.gov/books/NBK1116/?term=$$\ visibility hide\ giab Genome In a Bottle bed 3 Genome In a Bottle Structural Variants and Trios 0 100 0 0 0 127 127 127 0 0 0
Description
\\ The tracks listed here contain data from\ The Genome in a\ Bottle Consortium (GIAB), an open, public consortium hosted by \ NIST. The priority of GIAB is to develop \ reference standards, reference methods, and reference data by authoritative characterization of \ human genomes for use in benchmarking, including analytical validation and technology \ development that will support translation of whole human genome sequencing to clinical practice. The\ sole purpose of this work is to provide validated variants and regions to enable technology and \ bioinformatics developers to benchmark and optimize their detection methods.\
\\ The Ashkenazim and the Chinese Trio tracks show benchmark SNV calls from two \ son/father/mother trios of Ashkenazi Jewish and Han Chinese ancestry from the \ Personal Genome Project, \ consented for commercial redistribution.\
\\ The Genome In a Bottle Structural Variants track shows benchmark SV calls (nssv) \ and variant regions (nsv) (5,262 insertions and 4,095 deletions, > 50 bp, in 2.51 Gb of \ the genome) from the son (HG002/NA24385) from the Ashkenazi Jewish trio.\
\\ Samples are disseminated as National Institute of Standards and Technology (NIST)\ Reference Materials.\
\Display Conventions and Configuration
\ These tracks are multi-view composite tracks that contain multiple data types (views). Each view \ within a track has separate display controls, as described \ here.\ \\ Unlike a regular genome browser track, the Ashkenazim and the Chinese Trio tracks display \ the genome variants of each individual as two haplotypes; SNPs, small insertions and deletions\ are mapped to each haplotype based on the phasing information of the VCF file. The\ haplotype 1 and the haplotype 2 are displayed as two separate black lanes for the\ browser window region. Each variant is drawn as a vertical dash. Homozygous variants will\ show two identical dashes on both haplotype lanes. Phased heterozygous variants are placed on\ one of the haplotype lanes and unphased heterozygous variants are displayed in the area\ between the two haplotype lanes.\
\\ Predicted de novo variants and variants that are inconsistent with phasing in the trio son can be \ colored in red using the track Configuration options.\
\ \Data Access
\ The raw data can be explored interactively with the \ Table Browser, or the Data Integrator. For\ automated analysis, the data may be queried from our REST API.\ \\ Benchmark VCF and BED files for small variants are available for GRCh37 and GRCh38 under each\ genome at NCBI FTP site. \ Structural variants are available for GRCh37 at dbVAR \ nst175.\
\ \References
\ \\
Zook JM, McDaniel J, Olson ND, Wagner J, Parikh H, Heaton H, Irvine SA, Trigg L, Truty R, McLean CY\
et al.\
\
An open resource for accurately benchmarking small variant and reference calls.\
Nat Biotechnol. 2019 May;37(5):561-566.\
PMID: 30936564; PMC:
\ Zook JM, Hansen NF, Olson ND, Chapman L, Mullikin JC, Xiao C, Sherry S, Koren S, Phillippy AM,\ Boutros PC et al.\ \ A robust benchmark for detection of germline large deletions and insertions.\ Nat Biotechnol. 2020 Jun 15;.\ PMID: 32541955\
\ \ varRep 1 compositeTrack on\ group varRep\ html giab\ longLabel Genome In a Bottle Structural Variants and Trios\ shortLabel Genome In a Bottle\ subGroup1 view Views trios=Trios sv=Structural_Variants\ track giab\ type bed 3\ visibility hide\ triosView Genome In a Bottle Trios vcfPhasedTrio Genome in a Bottle Ashkenazim and Chinese Trios 0 100 0 0 0 127 127 127 0 0 0 varRep 0 longLabel Genome in a Bottle Ashkenazim and Chinese Trios\ parent giab\ shortLabel Genome In a Bottle Trios\ track triosView\ type vcfPhasedTrio\ view trios\ visibility hide\ genscan Genscan Genes genePred genscanPep Genscan Gene Predictions 0 100 170 100 0 212 177 127 0 0 0Description
\ \\ This track shows predictions from the\ Genscan program\ written by Chris Burge.\ The predictions are based on transcriptional, translational and donor/acceptor\ splicing signals as well as the length and compositional distributions of exons,\ introns and intergenic regions.\
\ \\ For more information on the different gene tracks, see our Genes FAQ.
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ gene prediction\ tracks.\
\ \\ The track description page offers the following filter and configuration\ options:\
- \
- Color track by codons: Select the genomic codons option\ to color and label each codon in a zoomed-in display to facilitate validation\ and comparison of gene predictions. Go to the\ \ Coloring Gene Predictions and Annotations by Codon page for more\ information about this feature. \
Methods
\ \\ For a description of the Genscan program and the model that underlies it,\ refer to Burge and Karlin (1997) in the References section below.\ The splice site models used are described in more detail in Burge (1998)\ below.\
\ \Credits
\ \ Thanks to Chris Burge for providing the Genscan program.\ \References
\ \\ Burge C.\ Modeling Dependencies in Pre-mRNA Splicing Signals.\ In: Salzberg S, Searls D, Kasif S, editors.\ Computational Methods in Molecular Biology.\ Amsterdam: Elsevier Science; 1998. p. 127-163.\
\ \\ Burge C, Karlin S.\ \ Prediction of complete gene structures in human genomic DNA.\ J. Mol. Biol. 1997 Apr 25;268(1):78-94.\ PMID: 9149143\
\ genes 1 color 170,100,0\ group genes\ html ../../genscan\ longLabel Genscan Gene Predictions\ parent genePredArchive\ shortLabel Genscan Genes\ track genscan\ type genePred genscanPep\ visibility hide\ encTfChipPkENCFF567NFS GM12878 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in GM12878 from ENCODE 3 (ENCFF567NFS) 0 100 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in GM12878 from ENCODE 3 (ENCFF567NFS)\ parent encTfChipPk off\ shortLabel GM12878 CUX1\ subGroups cellType=GM12878 factor=CUX1\ track encTfChipPkENCFF567NFS\ gnfAtlas2 GNF Atlas 2 expRatio GNF Expression Atlas 2 0 100 0 0 0 127 127 127 0 0 0Description
\This track shows expression data from the GNF Gene Expression\ Atlas 2. This contains two replicates each of 79 human\ tissues run over Affymetrix microarrays. \ By default, averages of related tissues are shown. Display all tissues\ by selecting "All Arrays" from the "Combine arrays" menu\ on the track settings page.\ As is standard with microarray data red indicates overexpression in the \ tissue, and green indicates underexpression. You may want to view gene\ expression with the Gene Sorter as well as the Genome Browser.
\ \Credits
\ Thanks to the \ Genomics Institute of the Novartis\ Research Foundation (GNF) for the data underlying this track. \ \References
\\
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G\
et al.\
\
A gene atlas of the mouse and human protein-encoding transcriptomes.\
Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6062-7.\
PMID: 15075390; PMC:
Description
\\ The Genome Aggregation Database\ (gnomAD) is a resource developed by an international coalition of investigators at the Broad\ Institute and collaborating institutions, with the goal of aggregating and harmonizing exome and\ whole-genome sequencing data from large-scale sequencing projects spanning disease-specific cohorts\ and population genetics studies. Individuals affected by severe pediatric diseases and first-degree\ relatives were excluded from the studies. However, some individuals with severe disease may still\ have remained in the datasets, although probably at an equivalent or lower frequency than observed\ in the general population. For each variant, gnomAD provides allele frequencies stratified by\ genetic ancestry group, alongside quality metrics such as depth of coverage and genotype quality\ scores. The database also supplies sequencing coverage, structural variants, CNVs, and short tandem\ repeats. Additionally, gnomAD provides non-coding constraint and gene-level constraint\ metrics — including pLI scores, observed/expected (oe) ratios, and LOEUF values —\ that quantify intolerance to loss-of-function variation and are widely used to prioritize\ candidate disease genes. The most\ current release on hg38 is v4.1, but the older v3 and v2 versions are also available.\
\ \\ The available data tracks are:\
- \
- gnomAD\ v4.1 — Shows single nucleotide variants (SNVs) and small insertion/deletion\ variants of 807,162 individuals, including 730,947 exomes and 76,215 genomes. \
- gnomAD\ v3.1.1 — Shows variants from 76,156 whole genomes (and no exomes), all mapped\ to GRCh38/hg38. \
- Deprecated:\ gnomAD v3.1 — Same underlying data as v3.1.1 with older annotations. Do not\ use; will be removed soon. \
- gnomAD\ v3 — Shows variants from 71,702 whole genomes from the v3.0 release. \
- gnomAD\ v2 — Shows variants from 125,748 exomes and 15,708 whole genomes, lifted from\ GRCh37/hg19 to GRCh38/hg38. \
- gnomAD Mut\ Constraint — Shows the reduced variation caused by purifying natural selection\ for 1kbp windows across the genome (based on v3.1.2). \
- gnomAD Constraint\ Metrics — Contains per-gene and per-transcript metrics of pathogenicity\ (LOEUF, pLI, and Z-scores) for v2.1.1, v4, and v4.1. \
- gnomAD v3 Genome\ Coverage — Shows various read depth metrics for genome samples from\ v3.0.1. \
- gnomAD v4\ Exome Coverage — Shows various read depth metrics for exome samples from\ v4.0. \
- gnomAD\ Structural Variants — Shows structural variant calls (variants >=50\ nucleotides) from gnomAD v4.1. \
- gnomAD\ Rare CNV Variants — Shows rare copy number variants (<1% overall site\ frequency) from gnomAD v4.1. \
- gnomAD\ STR — Shows short tandem repeat genotypes at disease-associated loci from\ gnomAD v3.1.3. \
\ For questions on the gnomAD data, also see the gnomAD FAQ.
\\ More details on the Variant type(s) can be found on the Sequence Ontology page.
\ \Data Access
\ \\
The raw data can be explored interactively with the \
Table Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our REST API, and the genome annotations are stored in files that\
can be downloaded from our
\ The data can also be found directly from the gnomAD downloads page. Please refer to\ our mailing list archives for questions, or our Data Access FAQ for more information.
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
\ Please note that some annotations within the provided files may have restrictions on usage. See here for more information.\
\ \References
\ \\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM, Ganna\
A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\ Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\ AJ, Cummings BB et al.\ Analysis of protein-coding\ genetic variation in 60,706 humans. Nature. 2016 Aug 17;536(7616):285-91.\ PMID: 27535533;\ PMC: PMC5018207\
\\
Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\
Gauthier LD, Wang H et al.\
\
A structural variation reference for medical and population genetics.\
Nature. 2020 May;581(7809):444-451.\
PMID: 32461652; PMC:
\ Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q, Alföldi J, Watts NA, Vittal C,\ Gauthier LD et al.\ \ A genomic mutational constraint map using variation in 76,156 human genomes.\ Nature. 2024 Jan;625(7993):92-100.\ PMID: 38057664\
\ varRep 0 cartVersion 6\ group varRep\ html gnomad\ longLabel Genome Aggregation Database (gnomAD)\ pennantIcon New red ../goldenPath/newsarch.html#041026 "New gnomAD STR track added Apr. 10, 2026"\ shortLabel gnomAD\ superTrack on\ track gnomadVariants\ gnomadPLI gnomAD Constraint Metrics bigBed 12 Genome Aggregation Database (gnomAD) Predicted Constraint Metrics (LOEUF, pLI, and Z-scores) 0 100 0 0 0 127 127 127 0 0 0Description
\\ The Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics track set contains\ metrics of pathogenicity per-gene as predicted for gnomAD v2.1.1, v4.0, or v4.1 and identifies genes subject to\ strong selection against various classes of mutation.\
\ \\ This track includes several subtracks of constraint metrics calculated at gene (canonical\ transcript) and transcript level. For more information see the following\ blog post.\ The metrics include:\
- \
- Observed and expected variant counts per transcript/gene\
- Observed/Expected ratio (O/E)\
- Z-scores of the observed counts compared to expected\
- Probability of loss of function intolerance (pLI), for predicted loss-of-function (pLoF) variation only\
Display Conventions and Configuration
\\ There are two "groups" of tracks in this set, and three gnomAD versions (v2.1.1, v4.0, and v4.1):\
- \
- Gene/Transcript LoF Constraint tracks: Predicted constraint metrics at the whole gene\
level or whole transcript level for three different types of variation: missense, synonymous,\
and predicted loss of function. The Gene Constraint track displays metrics for a canonical \
transcript per gene defined as the longest isoform. The Transcript Constraint track displays \
metrics for all transcript isoforms. Items on both tracks are shaded according to the pLI score,\
with outlier items shaded in grey.\
\ Please note there is no gene-level track available for v4.0 and v4.1.\ - Gene/Transcript Missense Constraint tracks: The missense constraint tracks are built\ similarly to the LoF constraint tracks, however the items displayed are based on \ missense Z scores.\ All items are colored black, and individual Z scores can be seen on mouseover. \
\ Clicking the grey box to the left of the track, or right-clicking and choosing the Configure option,\ brings up the interface for filtering items based on their pLI score, or labeling the items\ based on their Ensembl identifier and/or Gene Name.\
\ \Methods
\\ Please see the gnomAD browser help page and FAQ for further explanation of the topics below.
\ \Observed and Expected Variant Counts
\\ Observed count: The number of unique single-nucleotide variants in each transcript/gene\ with 123 or fewer alternative alleles (MAF < 0.1%).\
\\ Expected count: A depth-corrected probability prediction model that takes into account\ sequence context, coverage, and methylation was used to predict expected\ variant counts. For more information please see Lek et al., 2016.\
\\ Variants found in exons with a median depth < 1 were removed from both counts.\
\ The O/E constraint score is the ratio of the observed/expected variants in that gene. Each item in\ this track shows the O/E ratio for three different types of variation: missense, synonymous, and\ loss-of-function. The O/E ratio is a continuous measurement of how tolerant a gene or\ transcript is to a certain class of variation. When a gene has a low O/E value, it is under stronger\ selection for that class of variation than a gene with a higher O/E value. Because Counts depend on\ gene size and sample size, the precision of the values varies a lot from one gene to the next. \ Therefore, the 90% confidence interval (CI) is also displayed along with the O/E ratio to better\ assist interpretation of the scores.\
\ When evaluating how constrained a gene is, it is essential to consider the CI when using O/E. In \ research and clinical interpretation of Mendelian cases, pLI > 0.9 has been widely used for \ filtering. Accordingly, the Gnomad team suggests using the upper bound of the O/E confidence interval\ LOEUF < 0.35 as a threshold if needed.\
\ Please see the Methods section below for more information about how the scores were calculated.\
\ \pLI and Z-scores
\\ The pLI and Z-scores of the deviation of observed variant counts relative to the expected number \ are intended to measure how constrained or intolerant a gene or transcript is to a specific type of\ variation. Genes or transcripts that are particularly depleted of a specific class of variation\ (as observed in the gnomAD data set) are considered intolerant of that specific type of variation.\ Z-scores are available for the missense and synonymous categories and pLI scores are available for\ the loss-of-function variation.\
\\ Missense and Synonymous: Positive Z-scores indicate more constraint (fewer observed \ variants than expected), and negative scores indicate less constraint (more observed variants than\ expected). A greater Z-score indicates more intolerance to the class of variation. Z-scores\ were generated by a sequence-context-based mutational model that predicted the number of expected\ rare (< 1% MAF) variants per transcript. The square root of the chi-squared value of the \ deviation of observed counts from expected counts was multiplied by -1 if the observed count was\ greater than the expected and vice versa. For the synonymous score, each Z-score was corrected by\ dividing by the standard deviation of all synonymous Z-scores between -5 and 5. For the missense\ scores, a mirrored distribution of all Z-scores between -5 and 0 was created, and then all missense\ Z-scores were corrected by dividing by the standard deviation of the Z-score of the mirror\ distribution.\
\\ Loss-of-function: pLI closer to 1 indicates that the gene or transcript cannot tolerate\ protein truncating variation (nonsense, splice acceptor and splice donor variation). The gnomAD\ team recommends transcripts with a pLI >= 0.9 for the set of transcripts extremely intolerant\ to truncating variants. pLI is based on the idea that transcripts can be classified into three\ categories:\
- \
- null: heterozygous or homozygous protein truncating variation is completely tolerated\
- recessive: heterozygous variants are tolerated but homozygous variants are not\
- haploinsufficient: heterozygous variants are not tolerated\
\ Please see Samocha et al., 2014 and Lek et al., 2016 for further discussion of these metrics.\
\ \Transcripts Included
\\ For version 2.1.1 only, the GENCODE transcripts were filtered according to the following criteria:\
- \
- Must have methionine at start of coding sequence\
- Must have stop codon at end of coding sequence\
- Must be divisible by 3\
- Must have at least one observed variant when removing exons with median depth < 1\
- Must have reasonable number of missense and synonymous variants as determined by a Z-score cutoff\
\ For version v2.1.1, the gnomAD gene/transcript data is based on hg19. In order to map transcripts and genes to the hg38 genome the following steps were taken:\
- \
- Transcript track: The gnomAD ENST identifiers were attempted to be matched to all GENCODE versions\ between V20 and V44, giving coordinate priorities to the most recent models. In total 74550/80950 \ transcripts were mapped. \
- Genes track: The gnomAD file ENSG identifiers were attempted to be matched to all GENCODE versions\ between V20 and V44, giving coordinate priorities to the most recent models. This mapped 19221/19704\ genes. The remainder of the genes were attempted to be mapped using the same strategy, but matching\ on gene symbols instead of ENSG identifiers. In total 19567/19704 genes were mapped. \
\ For version v4.0 and v4.1, the gnomAD transcript data is based on hg38. In order to map the\ transcripts to hg38, the transcript version numbers in the gnomAD download file were joined with\ GENCODE V39 and NCBI RefSeq coordinates available at UCSC.\
\ \UCSC Track Methods
\Version based on gnomAD v2.1.1
\Gene and Transcript Constraint tracks
\\ Per gene and per transcript data were downloaded from the gnomAD Google Storage bucket:\
\ gs://gnomad-public/release/2.1.1/constraint/gnomad.v2.1.1.lof_metrics.by_gene.txt.bgz\ gs://gnomad-public/release/2.1.1/constraint/gnomad.v2.1.1.lof_metrics.by_transcript.txt.bgz\\ These data were then joined to the Gencode set of genes/transcripts available at the UCSC\ Genome Browser (see previous section) and then transformed into a bigBed 12+5. For the full list of commands used to\ make this track please see the\ makedoc.\ \ \
Version based on gnomAD v4.0
\Gene and Transcript Constraint tracks
\\ Per gene and per transcript data were downloaded from the gnomAD Google Storage bucket:\
\ https://storage.googleapis.com/gcp-public-data--gnomad/release/4.0/constraint/gnomad.v4.0.constraint_metrics.tsv\\ These data were then joined to the Gencode/NCBI set of genes/transcripts available at the UCSC\ Genome Browser and then transformed into a bigBed 12+5. For the full list of commands used to\ make this track please see the\ makedoc.\ \ \
Version based on gnomAD v4.1
\Gene and Transcript Constraint tracks
\\ Per gene and per transcript data were downloaded from the gnomAD Google Storage bucket:\
\ https://storage.googleapis.com/gcp-public-data--gnomad/release/4.1/constraint/gnomad.v4.1.constraint_metrics.tsv\\ These data were then joined to the Gencode/NCBI set of genes/transcripts available at the UCSC\ Genome Browser and then transformed into a bigBed 12+5. For the full list of commands used to\ make this track please see the\ makedoc.\ \ \
Data Access
\\
The raw data can be explored interactively with the Table Browser, or\
the Data Integrator. For automated access, this track, like all \
others, is available via our API. However, for bulk \
processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed \
file that can be downloaded from the\
download server. The exact\
filenames can be found in the track configuration file. Annotations can be converted to ASCII text\
by our tool bigBedToBed which can be compiled from the source code or downloaded as\
a precompiled binary for your system. Instructions for downloading source code and binaries can be\
found here. The tool\
can also be used to obtain only features within a given range, for example:
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gnomAD/pLI/pliByTranscript.bb -chrom=chr6 -start=0 -end=1000000 stdout\\
\ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.\
\ \\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
References
\ \\
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\
AJ, Cummings BB et al.\
\
Analysis of protein-coding genetic variation in 60,706 humans.\
Nature. 2016 Aug 18;536(7616):285-91.\
PMID: 27535533; PMC:
\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\
Ganna A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\
Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\
Gauthier LD, Wang H et al.\
\
A structural variation reference for medical and population genetics.\
Nature. 2020 May;581(7809):444-451.\
PMID: 32461652; PMC:
\
Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\
Satterstrom FK, O'Donnell-Luria AH et al.\
\
Transcript expression-aware annotation improves rare variant interpretation.\
Nature. 2020 May;581(7809):452-458.\
PMID: 32461655; PMC:
Description
\\ The Genome Aggregation Database (gnomAD) Proportion Expression Across Transcript Scores (pext) track set displays isoform expression levels across 50\ tissues from the Genotype Tissue Expression (GTEx) v10 dataset; tissues with fewer than 50 samples\ were excluded (Fallopian Tube, Endocervix, Ectocervix, Kidney, Medulla).\
\ \\ The gnomAD pext tracks provide a comprehensive view of the expression of exons across a \ gene using the proportion expression across transcripts, or pext metric, a \ transcript-level annotation metric that quantifies isoform expression for variants. This metric \ was calculated by annotating each variant with the expression of all possible consequences across \ all transcripts for each tissue and normalizing the expression of the annotation to the total \ expression of the gene, which can be interpreted as a measure of the proportion of the total \ transcriptional output from a gene that would be affected by the variant annotation in question.\ More information can be found on the Broad institute's pext help page \
\ \\ Each of the subtracks shows the pext metric for a specific tissue, except the gnomAD \ pext Mean Proportion subtrack that shows the average pext metrics calculated from the 50 GTEx \ tissues.\
\ \Display Conventions and Configuration
\ \\ The pext graphs display the mean expression at each base position for protein-coding (CDS) regions.\ While UTRs do have expression in transcriptome datasets, this information is not included\ for the visualization. The details page shows calculated sample percentages for the range of\ sequence within the browser window.\
\ \ \Methods
\\ The pext values are derived from isoform quantifications using the RSEM tool. Detailed information about\ development and commands to create these files can be found here. Pext values were downloaded\ from the gnomAD website \ and transformed into bigWigs, one per tissue. For the full list of UCSC specific steps, please\ see the "gnomAD PEXT scores" section of the\ \ hg38 makedoc from our GitHub repository.\
\ \\ Note that isoform quantification tools can be imprecise, especially for longer genes with many\ annotated isoforms. Regions with low pext values might be enriched for annotation errors (ie. there\ may be edge cases for which an exon that is established to be critical for gene function may appear\ unexpressed with pext). Also note that the GTEx dataset is postmortem adult tissue, and thus\ the possibility that an exon may be development-specific or may be expressed in tissues not\ represented in GTEx can not be dismissed.\
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API.\ The data can also be found directly from the gnomAD downloads page.\
\ \\ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.
\ \\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
References
\ \\
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\
AJ, Cummings BB et al.\
\
Analysis of protein-coding genetic variation in 60,706 humans.\
Nature. 2016 Aug 18;536(7616):285-91.\
PMID: 27535533; PMC:
\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\
Ganna A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\
Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\
Gauthier LD, Wang H et al.\
\
A structural variation reference for medical and population genetics.\
Nature. 2020 May;581(7809):444-451.\
PMID: 32461652; PMC:
\
Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\
Satterstrom FK, O'Donnell-Luria AH et al.\
\
Transcript expression-aware annotation improves rare variant interpretation.\
Nature. 2020 May;581(7809):452-458.\
PMID: 32461655; PMC:
\
Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\
Satterstrom FK, O'Donnell-Luria AH et al.\
\
Transcript expression-aware annotation improves rare variant interpretation.\
Nature. 2020 May;581(7809):452-458.\
PMID: 32461655; PMC:
Description
\\ The Genome Aggregation Database (gnomAD) - Rare CNV variants (<1% overall site frequency) v4.1 track set shows rare autosomal coding copy number variants (CNVs) with an overall\ site frequency of less than 1%. These variants were identified from exome sequencing (ES) data of\ 464,297 individuals. The data can also be explored via the\ gnomAD browser.\ \
Display Conventions and Configuration
\ \\ Items are colored by the type of variant:\
| Variant Type | \|
|---|---|
| Deletion (DEL) | \31939 | \
| Duplication (DUP) | \36760 | \
Mouseover on an item will display the position, size of variant, genes impacted by\ variant (>=10% CDS overlap by deletion or >=75% CDS overlap by duplication), and site\ frequency of non-neuro control samples. Item description pages include a linkout to\ the gnomAD browser showing additional genetic ancestry group information.
\ \ \Methods
\ \Exome CNV Discovery Method: GATK-gCNV
\\ To identify rare coding CNVs from the ES data of 464,297 individuals in gnomAD v4, the GATK-gCNV\ method was employed, as described in Babadi et al., Nat Genet, 2023.
\ \
\
\
The CNV discovery process started with collecting the number of reads mapped to 363,301 autosomal\ target intervals derived from protein-coding exons (Fig. 1a, b; Babadi et al.). These read counts\ were used to capture sample-level technical variability, such as differences in exome capture kits\ or sequencing centers, and generated 1,045 different batches of samples for parallel processing\ (Fig. 1c). For each of these batches, 200 random samples were selected for training GATK-gCNV in\ cohort mode,which can be thought of as the creation of a "panel of normals" (PoN). The resulting\ PoN models were then used to efficiently delineate CNV events on all of the samples of their\ respective cohorts using the GATK-gCNV case mode (Fig. 1d,e).\
\ \\ The raw, individual-level CNV calls produced by GATK-gCNV for all samples were then collated,\ and variants observed in multiple individuals were clustered using single-linkage clustering.\ Quality filtering followed the procedures outlined in Babadi et al., filtering CNVs based on\ sample-level (number of events per individual) and call-level (frequency, size, quality score) metrics\ Due to the significant increase in cohort size and heterogeneity compared to the datasets reported\ in Babadi et al., additional filters were applied. Samples with more than five chromosomes harboring\ rare CNVs, as well as those containing more than three rare terminal CNVs, were excluded. 1,049\ sites producing noisy normalized read-depth signals were masked. The final retained CNVs and sites\ were subsequently annotated for impacted genes and frequencies.
\ \Limitations of ES-based rare coding CNVs in gnomAD v4
\- \
- This dataset includes only rare coding CNVs, filtered to <1% site frequency in the overall\ dataset. \
- This dataset only includes variants that span three or more exons that received sufficient\ coverage. \
- This dataset is limited to autosomal CNVs for now. \
\ More information can be found at the\ \ gnomAD site.
\ \\ The bed files was obtained from the gnomAD Google Storage bucket:
\ \\ https://storage.googleapis.com/gcp-public-data--gnomad/release/4.1/exome_cnv/gnomad.v4.1.cnv.all.bed\\ \ The data was then transformed into a bigBed track. For the full list of commands used to make this\ track please see the "gnomAD CNVs v4.1" section of the\ makedoc.\ \ \
Data Access
\\
The raw data can be explored interactively with the Table Browser, or\
the Data Integrator. For automated access, this track, like all \
others, is available via our API. However, for bulk \
processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed \
file that can be downloaded from the\
download server.\
The exact filenames can be found in the track configuration file. Annotations can be converted to\
ASCII text by our tool bigBedToBed which can be compiled from the source code or\
downloaded as a precompiled binary for your system. Instructions for downloading source code and\
binaries can be found\
here. The tool can\
also be used to obtain only features within a given range, for example:
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gnomAD/v4/cnv/gnomad.v4.1.cnv.all.bb -chrom=chr6 -start=0 -end=1000000 stdout\\ \
\ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.
\ \\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
References
\ \\
Babadi M, Fu JM, Lee SK, Smirnov AN, Gauthier LD, Walker M, Benjamin DI, Zhao X, Karczewski KJ, Wong\
I et al.\
\
GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data.\
Nat Genet. 2023 Sep;55(9):1589-1597.\
PMID: 37604963; PMC:
\
Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\
Gauthier LD, Wang H et al.\
\
A structural variation reference for medical and population genetics.\
Nature. 2020 May;581(7809):444-451.\
PMID: 32461652; PMC:
\
Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\
Satterstrom FK, O'Donnell-Luria AH et al.\
\
Transcript expression-aware annotation improves rare variant interpretation.\
Nature. 2020 May;581(7809):452-458.\
PMID: 32461655; PMC:
\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\
Ganna A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\
AJ, Cummings BB et al.\
\
Analysis of protein-coding genetic variation in 60,706 humans.\
Nature. 2016 Aug 18;536(7616):285-91.\
PMID: 27535533; PMC:
Size of variant: ${svlen}
Genes impacted by variant: ${genes}
Site frequency (non-neuro control samples): ${sf}\ parent gnomadVariants on\ searchIndex name\ shortLabel gnomAD Rare CNV Variants\ track gnomadCopyNumberVariants\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_cnv_r4\ urlLabel gnomAD Copy number variants Browser\ visibility hide\ gnomadStr gnomAD STR bigBed 9 + Genome Aggregation Database (gnomAD) - Short Tandem Repeat Genotypes at Disease-Associated Loci 3 100 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/short-tandem-repeat/$$?dataset=gnomad_r3
Description
\\ The gnomAD STR track displays short tandem repeat (STR) genotypes at 87\ disease-associated loci from the\ Genome Aggregation\ Database (gnomAD) v3.1.3. The data include individual-level STR genotypes from\ 18,511 whole-genome sequenced samples across 10 populations, aggregated\ into per-locus allele frequency distributions.
\ \\ These loci were selected because tandem repeat expansions at these sites have been\ reported to cause human genetic diseases, including Huntington disease (HTT),\ fragile X syndrome (FMR1), Friedreich ataxia (FXN), various\ spinocerebellar ataxias, myotonic dystrophies, and other neurological and\ neuromuscular disorders. Most loci (56) have motifs between 3–6 bp, while\ additional loci have longer motifs of 10–24 bp.
\ \\ The genotypes were generated using\ ExpansionHunter\ v5 on gnomAD v3.1 whole-genome sequencing data (150 bp read lengths). Of the\ samples, 64% were PCR-free, 13% PCR-plus, and 23% had unknown PCR protocol.\ ExpansionHunter was selected because it had the best accuracy among existing tools\ for detecting expansions at disease-associated loci. Results were generated without\ off-target regions to minimize overestimation of repeat sizes.\ For each locus, the data show the distribution of repeat allele sizes observed\ across the gnomAD population, providing a reference for normal and expanded allele\ ranges. For more details on the methods, see the\ gnomAD blog post on STR calls.
\ \Display Conventions
\\ Items are colored by the length of the repeat motif:
\- \
- Red – mononucleotide (period 1) \
- Blue – dinucleotide (period 2) \
- Green – trinucleotide (period 3) \
- Orange – tetranucleotide (period 4) \
- Purple – pentanucleotide (period 5) \
- Steel blue – hexanucleotide (period 6) \
- Gray – longer or complex motifs \
\ Each item is labeled by the gene name. Hovering shows the repeat motif,\ gene, total sample count, and number passing quality filters. Clicking an item\ links to the corresponding gnomAD STR locus page with interactive allele\ frequency histograms and detailed population breakdowns.
\ \\ The detail page for each locus shows:
\- \
- Motif(s) – the repeat unit(s) genotyped at this locus \
- Samples – total genotyped individuals and number passing filters \
- Allele distribution – allele sizes and their frequencies \
- Populations – sample counts per gnomAD population \
Methods
\\
The gnomAD STR genotype data file\
(gnomAD_STR_genotypes__2025_03_17.tsv.gz) was downloaded from the\
gnomAD downloads page. This file contains individual-level\
STR genotypes at 87 disease-associated loci generated using\
ExpansionHunter\
on gnomAD v3.1.3 whole-genome sequencing data.
\ For the UCSC Genome Browser track, the individual genotype records (~1.4 million rows)\ were aggregated per locus to produce summary statistics: total sample count,\ PASS-filter count, allele size frequency distributions, and per-population sample counts.\ Coordinates were used as provided (0-based). Some loci include genotypes for multiple\ motif patterns (e.g., complex repeat structures) and for adjacent repeats; these are\ represented as separate records.
\ \\ The 10 populations represented are: African/African American (afr),\ Admixed American/Latino (amr), Amish (ami), Ashkenazi Jewish (asj),\ East Asian (eas), Finnish (fin), Middle Eastern (mid), Non-Finnish European (nfe),\ South Asian (sas), and Other (oth).
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated\ analysis, the data may be queried from our\ REST API. The underlying bigBed\ file can be downloaded from our\ download\ server.
\ \\ The complete gnomAD STR dataset, including individual-level genotypes, is available\ from the gnomAD downloads page. Interactive locus-level views with\ allele frequency histograms are available at the\ gnomAD STR browser.
\ \Credits
\\ Thanks to the gnomAD\ production team at the Broad Institute for generating and distributing this data.
\ \References
\\
Chen S, Francioli LC, Goodrich JK, Collins RL, Kanai M, Wang Q,\
Alföldi J, Watts NA, Vittal C, Gauthier LD et al.\
\
A genomic mutational constraint map using variation in 76,156 human\
genomes.\
Nature. 2024 Jan;625(7993):92-100.\
PMID: 38057664; PMC:
\
Dolzhenko E, Deshpande V, Schlesinger F, Krusche P, Petrovski R,\
Chen S, Emig-Agius D, Gross A, Narzisi G, Bowman B\
et al.\
\
ExpansionHunter: a sequence-graph-based tool to analyze variation\
in short tandem repeat regions.\
Bioinformatics. 2019 Nov 1;35(22):4754-4756.\
PMID: 31134279; PMC:
Repeat Motif(s): $motif
Number of samples: $nSamples
Passing quality filter: $nPass
Population sample counts: $populations\ parent gnomadVariants on\ pennantIcon New red ../goldenPath/newsarch.html#041026 "Released Apr. 10, 2026"\ searchIndex name\ shortLabel gnomAD STR\ track gnomadStr\ type bigBed 9 +\ url https://gnomad.broadinstitute.org/short-tandem-repeat/$$?dataset=gnomad_r3\ urlLabel View at gnomAD\ visibility pack\ gnomadStructuralVariants gnomAD Structural Variants bigBed 9 + Genome Aggregation Database (gnomAD) - Structural Variants v4.1 0 100 0 0 0 127 127 127 0 0 0 https://gnomad.broadinstitute.org/variant/$$?dataset=gnomad_sv_r4
Description
\ \\
\
\
NOTE: Only variants that have passed\
\ the quality filter are displayed by default.
\
\ The Genome Aggregation Database (gnomAD) - Structural Variants v4.1 track set shows structural variants calls (>=50 nucleotides) from the gnomAD v4.1\ release on 63,046 unrelated genomes. It mostly (but not entirely) overlaps with the genome set used\ for the gnomAD short variant release. For more information see the following blog post, \ \ Structural variants in gnomAD.
\ \Display Conventions and Configuration
\ \\ Items are shaded according to variant type, mouseover on items indicates affected\ protein-coding genes, size of the variant (which may differ from the chromosomal coordinates in\ cases like insertions), variant type (insertion, duplication, etc), allele count, allele number,\ and allele frequency. When more than 2 genes are affected by a variant, the full list can be\ obtained by clicking on the item and reading the details page. A short summary is available in the\ below table:
\ \| Variant Type | \All SV's | \
|---|---|
| Breakend (BND) | \356035 | \
| Complex (CPX) | \15189 | \
| Translocation (CTX) | \99 | \
| Deletion (DEL) | \1206278 | \
| Duplication (DUP) | \269326 | \
| Insertion (INS) | \304645 | \
| Inversion (INV) | \2193 | \
| Copy number variants (CNV) | \721 | \
\ Detailed information on the CNV color code is described \ here. All tracks can be \ filtered according to the size of the variant and variant type, using the track Configure\ options.\
\ \Filtering Options
\\ Three filters are available for this track:\
\- \
- Variant Size: Used to exclude/include variants according to the size.\
- Non-neurological allele frequency: Used to exclude/include allele frequency of variants in\ individuals who do not have a neurological condition, as identified in a case-control study.\
- Common disease control allele frequency: Used to exclude/include allele frequency of\ variants in individuals not identified as cases in a case-control study of common disease.\ \
Methods
\\ The bed files was obtained from the gnomAD Google Storage bucket:\ \
\ https://storage.googleapis.com/gcp-public-data--gnomad/release/4.1/genome_sv/gnomad.v4.1.sv.non_neuro_controls.sites.bed.gz\\ \ The data was then transformed into a bigBed track. For the full list of commands used to make this\ track please see the "gnomAD Structural Variants v4" section of the\ makedoc.\ \ \
Data Access
\\
The raw data can be explored interactively with the Table Browser, or\
the Data Integrator. For automated access, this track, like all \
others, is available via our API. However, for bulk \
processing, it is recommended to download the dataset. The genome annotation is stored in a bigBed \
file that can be downloaded from the\
download server.\
The exact filenames can be found in the track configuration file. Annotations can be converted to\
ASCII text by our tool bigBedToBed which can be compiled from the source code or\
downloaded as a precompiled binary for your system. Instructions for downloading source code and\
binaries can be found\
here. The tool can\
also be used to obtain only features within a given range, for example:
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gnomAD/v4/structuralVariants/gnomad.v4.1.sv.non_neuro_controls.sites.bb -chrom=chr6 -start=0 -end=1000000 stdout\\ \
\ Please refer to our\ mailing list archives\ for questions and example queries, or our\ Data Access FAQ\ for more information.
\ \\ More information about using and understanding the gnomAD data can be found in the\ gnomAD FAQ site.\
\ \Credits
\\
Thanks to the Genome Aggregation\
Database Consortium for making these data available. The data are released under the
References
\ \\
Lek M, Karczewski KJ, Minikel EV, Samocha KE, Banks E, Fennell T, O'Donnell-Luria AH, Ware JS, Hill\
AJ, Cummings BB et al.\
\
Analysis of protein-coding genetic variation in 60,706 humans.\
Nature. 2016 Aug 18;536(7616):285-91.\
PMID: 27535533; PMC:
\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alföldi J, Wang Q, Collins RL, Laricchia KM,\
Ganna A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
PMID: 32461654; PMC:
\
Collins RL, Brand H, Karczewski KJ, Zhao X, Alföldi J, Francioli LC, Khera AV, Lowther C,\
Gauthier LD, Wang H et al.\
\
A structural variation reference for medical and population genetics.\
Nature. 2020 May;581(7809):444-451.\
PMID: 32461652; PMC:
\
Cummings BB, Karczewski KJ, Kosmicki JA, Seaby EG, Watts NA, Singer-Berk M, Mudge JM, Karjalainen J,\
Satterstrom FK, O'Donnell-Luria AH et al.\
\
Transcript expression-aware annotation improves rare variant interpretation.\
Nature. 2020 May;581(7809):452-458.\
PMID: 32461655; PMC:
Description
\\ This track shows the names of the assembled supercontigs for the GRCh38 (hg38) assembly \ determined by the Genome Reference Consortium (GRC).\
\\ Data for this track were obtained from \ localId2acc files downloaded from GenBank.\
\ map 0 chromosomes chr1,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr2,chr20,chr21,chr22,chrX,chrY\ longLabel Genome Reference Consortium Contigs\ shortLabel GRC Contigs\ superTrack assemblyContainer pack\ track ctgPos2\ type ctgPos\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ grcIncidentDb GRC Incident bigBed 4 + GRC Incident Database 0 100 0 0 0 127 127 127 0 0 0 https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=$$Description
\\ This track shows locations in the human assembly where assembly\ problems have been noted or resolved, as reported by the\ Genome Reference Consortium (GRC). \
\\ If you would like to report an assembly problem, please use the GRC\ issue reporting system.\
\ \Methods
\\ Data for this track are extracted from the GRC\ incident database from the specific species *_issues.gff3 file.\ The track is synchronized once daily to incorporate new updates. \
\ \Credits
\The data and presentation of this track were prepared by\ Hiram Clawson.\
\ map 1 group map\ longLabel GRC Incident Database\ shortLabel GRC Incident\ track grcIncidentDb\ type bigBed 4 +\ url https://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=$$\ urlLabel GRC Incident:\ visibility hide\ patchesPsl GRC Patches psl GRC Patches: Alt Haplotypes and Fix Sequences 3 100 0 0 0 127 127 127 0 0 0Description
\\ These tracks show the two types of patch sequences from the Genome Reference Consortium\ (GRC) patch releases:
\ \Fix Patches
\\ This track shows alignments of fix patch sequences to\ main chromosome sequences in the reference genome assembly.\ When errors are corrected in the reference genome assembly, the\ Genome Reference Consortium\ (GRC) adds fix patch sequences containing the corrected regions.\ This strikes a balance between providing the most complete and correct genome\ sequence, while maintaining stable chromosome coordinates for the original assembly\ sequences.\
\\ Fix patches are often associated with incident reports displayed in the GRC Incidents\ track.\
\ \Alt Haplotypes
\\ This track shows alignments of alternate locus (also known as "alternate haplotype")\ reference sequences to main chromosome sequences in the reference genome assembly.\ Some loci in the genome are highly variable, with sets of variants that tend\ to segregate into distinct haplotypes.\ Only one haplotype can be included in a reference assembly chromosome sequence.\ Instead of providing a separate complete chromosome sequence for each haplotype,\ which could cause confusion with divergent chromosome coordinates and\ ambiguity about which sequence is the official reference, the\ Genome Reference Consortium\ (GRC) adds alternate locus sequences, ranging from tens of thousands of bases\ up to low millions of bases in size, to represent the distinct haplotypes. \
\ \Display Conventions and Configuration
\\ Both tracks follow the display conventions for\ \ PSL alignment tracks.\ Mismatching bases are highlighted in red.\ Several types of alignment gap may also be colored;\ for more information, see\ \ Alignment Insertion/Deletion Display Options.\
\\ By default, the tracks are only visible when there are items in the view window.\ This can be disabled by the checkbox Hide empty subtracks.
\ \Credits
\\ The alignments were provided by NCBI as GFF files and translated into the PSL\ representation for browser display by UCSC.\
\ map 1 compositeTrack on\ group map\ hideEmptySubtracks on\ html patchesPsl\ indelDoubleInsert on\ indelQueryInsert on\ longLabel GRC Patches: Alt Haplotypes and Fix Sequences\ pennantIcon p14 black https://genome-blog.gi.ucsc.edu/blog/patches/ "Includes annotations on GRCh38.p14 patch sequences"\ shortLabel GRC Patches\ track patchesPsl\ type psl\ visibility pack\ gtexEqtlHighConf GTEx cis-eQTLs bigBed GTEx fine-mapped cis-eQTLs 0 100 0 0 0 127 127 127 0 0 0Description
\\ This track shows genetic variants likely affecting proximal gene expression in 49 human tissues\ from the\ Genotype-Tissue Expression (GTEx)\ V8 data release.\ \ The data items displayed are gene expression quantitative trait loci within 1MB\ of gene transcription start sites (cis-eQTLs), significantly associated with\ gene expression and in the credible set of variants for the gene at a high\ confidence level. The data can only be calculated for the autosomes,\ so no data is shown on chrX.\
\ \Display Conventions
\\ Both the CAVIAR and DAP-G tracks show gene/variant pairs for 49 GTEx tissues.\ Variants are linked to the genes they interact with by a line. Variants\ are represented by thicker-width, single-base items. Genes are represented as\ thinner-width items covering the length of the gene. The direction of the\ chevrons on the line indicate whether the variant is upstream or downstream of\ the gene with the chevrons always pointing from the variant to the gene. If a\ variant is internal to the gene, then the variant is shown as a thicker segment\ than the gene. Items in the track are colored according to their tissue, with\ the color matching those in the GTEx Gene V8 Track.\ \
\ Hovering over items in the track display will show the variant ID (often a\ dbSNP rsID), the target gene, tissue, and posterior probablity (Causal\ Posterior Probability (CPP) for CAVIAR; SNP Posterior Inclusion Probability\ (PIP) for DAP-G). Clicking an item will show the details of that interaction\ with link outs to view more details on the GTEx website.\
\ \\ Track configuration supports filtering by tissue, gene, or posterior probability.\
\ \Methods
\\ Details on GTEx v8 analysis, including code, can be found in the\ GTEx GWAS Analysis Github.\
\ \\ Raw data for these analyses are available from the\ GTEx Portal.\
\ \CAVIAR
\\ The CAVIAR\ track at UCSC was created using the CAVIAR high-confidence set, which\ represents the high causal variants that have a causal posterior probability\ (CPP) of > 0.1.\
\ \DAP-G
\\ The DAP-G track at\ UCSC was created using the DAP-G 95% credible set, which represents varaints\ with strong eQTLs signals, which are signal clusters with signal-level\ posterior inclusion probability (SPIP) > 0.95.\
\ \Data Access
\\ The raw data for this track can be accessed in multiple ways. It can be explored interactively \ using the Table Browser or \ Data Integrator. You can also access the data\ entries in JSON format through our \ JSON API.
\ \\ The data in this track are organized in bigBed file format. The underlying files\ can be obtained from our downloads server:\
- \
- GTEx CAVIAR -
- GTEx DAP-G -
- GTEx DAP-G -
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gtex/eQtl/gtexCaviar.bb\ -chrom=chr16 -start=34990190 -end=36727467 stdout
\ \Credits
\ Thanks to GTEx investigators, analysts, and portal team for providing this data.\ \References
\\
GTEx Consortium.\
\
The GTEx Consortium atlas of genetic regulatory effects across human tissues.\
Science. 2020 Sep 11;369(6509):1318-1330.\
PMID: 32913098; PMC:
\ Lee Y, Luca F, Pique-Regi R, Wen X.\ \ Bayesian Multi-SNP Genetic Association Analysis: Control of FDR and Use of\ Summary Statistics.\ bioRxiv. 2018 May 8.\
\\
Wen X, Lee Y, Luca F, Pique-Regi R.\
\
Efficient Integrative Multi-SNP Association Analysis via Deterministic Approximation of\
Posteriors.\
Am J Hum Genet. 2016 Jun 2;98(6):1114-1129.\
PMID: 27236919; PMC:
\
Ongen H, Buil A, Brown AA, Dermitzakis ET, Delaneau O.\
\
Fast and efficient QTL mapper for thousands of molecular phenotypes.\
Bioinformatics. 2016 May 15;32(10):1479-85.\
PMID: 26708335; PMC:
\
Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E.\
\
Identifying causal variants at loci with multiple signals of association.\
Genetics. 2014 Oct;198(2):497-508.\
PMID: 25104515; PMC:
\
GTEx Consortium.\
\
The Genotype-Tissue Expression (GTEx) project.\
Nat Genet. 2013 Jun;45(6):580-5.\
PMID: 23715323; PMC:
\ \ GTEx Portal Documentation\
\ regulation 1 compositeTrack off\ group regulation\ itemRgb on\ longLabel GTEx fine-mapped cis-eQTLs\ shortLabel GTEx cis-eQTLs\ track gtexEqtlHighConf\ type bigBed\ visibility hide\ gtexGene GTEx Gene bed 6 + Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors) 0 100 0 0 0 127 127 127 1 0 0Description
\\ The\ NIH Genotype-Tissue Expression (GTEx) project\ was created to establish a sample and data resource for studies on the relationship between \ genetic variation and gene expression in multiple human tissues. \ This track shows median gene expression levels in 51 tissues and 2 cell lines, \ based on RNA-seq data from the GTEx midpoint milestone data release (V6, October 2015).\ This release is based on data from 8555 tissue samples obtained from 570 adult post-mortem individuals.
\ \Display Conventions
\\
In Full and Pack display modes, expression for each gene is represented by a colored bargraph,\
where the height of each bar represents the median expression level across all samples for a \
tissue, and the bar color indicates the tissue.\
Tissue colors were assigned to conform to the GTEx Consortium publication conventions.\
\
The bargraph display has the same width and tissue order for all genes.\
Mouse hover over a bar will show the tissue and median expression level.\
The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\
with highest expression level if it contributes more than 10% to the overall expression\
(and colored black if no tissue predominates).\
In Dense mode, the darkness of the grayscale rectangle displayed for the gene reflects the total\
median expression level across all tissues.
\ The GTEx transcript model used to quantify expression level is displayed below the graph,\ colored to indicate the transcript class \ (coding, \ noncoding, \ pseudogene, \ problem), \ following GENCODE conventions.\
\\ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue, along with a link to the corresponding gene page on the GTEx Portal.
\ The track configuration page provides controls to limit the genes and tissues displayed,\ and to select raw or log transformed expression level display.\ \Methods
\ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.\\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 platform to produce 76-bp paired end reads at a depth \ averaging 50M aligned reads per sample.\ Sequence reads were aligned to the hg19/GRCh37 human genome using Tophat v1.4.1 \ assisted by the GENCODE v19 transcriptome definition. \ Gene annotations were produced by taking the union of the GENCODE exons for each gene.\ Gene expression levels in RPKM were called via the RNA-SeQC tool, after filtering for \ unique mapping, proper pairing, and exon overlap.\ For further method details, see the \ \ GTEx Portal Documentation page.\
\ UCSC obtained the gene-level expression files, gene annotations and sample metadata from the \ GTEx Portal Download page.\ Median expression level in RPKM was computed per gene/per tissue.
\ \Subject and Sample Characteristics
\\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. \ The tissue types collected were chosen based on their clinical significance, logistical \ feasibility and their relevance to the scientific goal of the project and the \ research community. \ Postmortem samples were collected from non-diseased donors with ages ranging from 20 to 79. 34.4% of donors were female and 65.6% male. \
\ Additional summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.
\ \ \Data Access
\\ The raw data for the GTEx Gene expression track can be accessed interactively through the \ \ Table Browser or Data Integrator. Metadata can be \ found in the connected tables below.\
- \
- \ gtexGeneModel describes the gene names and coordinates in genePred format. \
- \ hgFixed.gtexTissue lists each of the 53 tissues in alphabetical order,\ corresponding to the comma separated expression values in gtexGene. \
- \ hgFixed.gtexSampleData has RPKM expression scores for each individual gene-sample \ data point, connected to gtexSample. \
- \ hgFixed.gtexSample contains metadata about sample time, collection site,\ and tissue, connected to the donor field in the gtexDonor table. \
- \ hgFixed.gtexDonor has anonymized information on the tissue donor.
\
For automated analysis and downloads, the track data files can be downloaded from \
our downloads server\
or the JSON API.\
Individual regions or the whole genome annotation can be accessed as text using our utility\
bigBedToBed. Instructions for downloading the utility can be found \
here. \
That utility can also be used to obtain features within a given range, e.g. \
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/gtex/gtexTranscExpr.bb -chrom=chr21\
-start=0 -end=100000000 stdout
\ Data can also be obtained directly from GTEx at the following link:\ \ https://gtexportal.org/home/datasets
\ \Credits
\\ Statistical analysis and data interpretation was performed by The GTEx Consortium Analysis \ Working Group. \ Data was provided by the GTEx LDACC at The Broad Institute of MIT and Harvard.
\ \References
\\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069\
\ \\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181
\ \ Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\ Pervouchine DD, Sullivan TJ et al.\ \ Human genomics. The human transcriptome across tissues and individuals.\ Science. 2015 May 8;348(6235):660-5.\ PMID: 25954002; PMC:\
DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\
\
RNA-SeQC: RNA-seq metrics for quality control and process optimization.\
Bioinformatics. 2012 Jun 1;28(11):1530-2.\
PMID: 22539670; PMC:
Description
\\ The\ NIH Genotype-Tissue Expression (GTEx)\ project was created to establish a sample and data resource for studies on the relationship\ between genetic variation and gene expression in multiple human tissues. \ This track displays median transcript expression levels in 53 tissues, based on\ RNA-seq data from the GTEx midpoint milestone data release (V6, October 2015).\ To view the GTEx tissues in anatomical context, see the \ GTEx Body Map.\
\\ Data for this track were computed at UCSC from GTEx RNA-seq sequence data using the\ Toil\ pipeline running the kallisto transcript-level quantification tool.
\ \Display Conventions
\\ In Full and Pack display modes, expression for each transcript is represented by a colored \ bar chart, where the height of each bar represents the median expression level across all \ samples for a tissue, and the bar color indicates the tissue.\
\ The bar chart display has the same width and tissue order for all transcripts.\ Mouse hover over a bar will show the tissue and median expression level.\ The Squish display mode draws a rectangle for each gene, colored to indicate the tissue\ with highest expression level if it contributes more than 10% to the overall expression\ (and colored black if no tissue predominates).\ In Dense mode, the darkness of the grayscale rectangle displayed for the transcript reflects \ the total median expression level across all tissues.
\\ Click-through on a graph displays a boxplot of expression level quartiles with outliers, \ per tissue.
\ \Methods
\\ Tissue samples were obtained using the GTEx standard operating procedures for informed consent\ and tissue collection, in conjunction with the \ \ National Cancer Institute Biorepositories and Biospecimen.\ All tissue specimens were reviewed by pathologists to characterize and\ verify organ source.\ Images from stained tissue samples can be viewed via the \ \ NCI histopathology viewer.\ The Qiagen PAXgene non-formalin tissue preservation product was used to stabilize \ tissue specimens without cross-linking biomolecules.
\\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ The Illumina TruSeq protocol was used to create an unstranded polyA+ library sequenced\ on the Illumina HiSeq 2000 platform to produce 76-bp paired end reads at a depth \ averaging 50M aligned reads per sample.
\\ Sequence reads for this track were quantified to the hg38/GRCh38 human genome using kallisto\ assisted by the GENCODE v23 transcriptome definition. Read quantification was performed at UCSC\ by the Computational Genomics lab, using the Toil pipeline. The resulting kallisto files were\ combined to generate a transcript per million (TPM) expression matrix using the UCSC tool,\ kallistoToMatrix. Average TPM expression values for each tissue were calculated and \ used to generate a bed6+5 file that is the base of the track. This was done using the UCSC\ tool, expMatrixToBarchartBed. The bed track was then converted to a bigBed file using the \ UCSC tool, bedToBigBed.
\\ The data in the hg19/GRCh37 version of this track was generated by converting the\ coordinates from the hg38/GRCh38 track data.\ Of the 189,615 BED entries from the original hg38 track, 176,220 were mapped over by transcript\ name to hg19 using wgEncodeGencodeCompV24lift37 (~93% coverage).
\ \Subject and Sample Characteristics
\\ The scientific goal of the GTEx project required that the donors and their biospecimen \ present with no evidence of disease. The tissue types collected were chosen based on their \ clinical significance, logistical feasibility and their relevance to the scientific goal \ of the project and the research community. Postmortem samples were collected from \ non-diseased donors with ages ranging from 20 to 79. 34.4% of donors were female and\ 65.6% male. \
\
\ Additional summary plots of GTEx sample characteristics are available at the \ \ GTEx Portal Tissue Summary page.
\ \Credits
\\ Samples were collected by the GTEx Consortium.\ RNA-seq was performed by the GTEx Laboratory, Data Analysis and Coordinating Center \ (LDACC) at the Broad Institute.\ John Vivian, Melissa Cline, and Benedict Paten of the UCSC Computational Genomics lab were\ responsible for the sequence read quantification used to produce this track. Kate Rosenbloom \ and Chris Eisenhart of the UCSC Genome Browser group were responsible for data file\ post-processing and track configuration.
\ \References
\\ J. Vivian et al., \ \ Rapid and efficient analysis of 20,000 RNA-seq samples with Toil\ bioRxiv bioRxiv, vol. 2, p. 62497, 2016.
\\ GTEx Consortium.\ \ The Genotype-Tissue Expression (GTEx) project.\ Nat Genet. 2013 Jun;45(6):580-5.\ PMID: 23715323; \ PMC: PMC4010069
\ \\ Carithers LJ, Ardlie K, Barcus M, Branton PA, Britton A, Buia SA, Compton CC, DeLuca DS, Peter-Demchok J, Gelfand ET et al.\ \ A Novel Approach to High-Quality Postmortem Tissue Procurement: The GTEx Project.\ Biopreserv Biobank. 2015 Oct;13(5):311-9.\ PMID: 26484571; \ PMC: PMC4675181
\ \\
Melé M, Ferreira PG, Reverter F, DeLuca DS, Monlong J, Sammeth M, Young TR, Goldmann JM,\
Pervouchine DD, Sullivan TJ et al.\
\
Human genomics. The human transcriptome across tissues and individuals.\
Science. 2015 May 8;348(6235):660-5.\
PMID: 25954002; PMC:
\
DeLuca DS, Levin JZ, Sivachenko A, Fennell T, Nazaire MD, Williams C, Reich M, Winckler W, Getz G.\
\
RNA-SeQC: RNA-seq metrics for quality control and process optimization.\
Bioinformatics. 2012 Jun 1;28(11):1530-2.\
PMID: 22539670; PMC:
Description
\ \\ This track displays single nucleotide polymorphisms (SNPs) identified by published \ Genome-Wide Association Studies (GWAS), collected in the \ NHGRI-EBI GWAS Catalog\ published jointly by the National\ Human Genome Research Institute (NHGRI) and the European Bioinformatics Institute (EMBL-EBI).\ Some abbreviations\ are used above.\
\\ From http://www.ebi.ac.uk/gwas/docs/about:\
\ The Catalog is a quality controlled, manually curated, literature-derived\ collection of all published genome-wide association studies assaying at least\ 100,000 SNPs and all SNP-trait associations with p-values < 1.0 x\ 10-5 (Hindorff et al., 2009). For more details about the Catalog\ curation process and data extraction procedures, please refer to the\ Methods page.\\ \ \
Methods
\ \\ From http://www.ebi.ac.uk/gwas/docs/methods:\
\ The GWAS Catalog data is extracted from the literature. Extracted information\ includes publication information, study cohort information such as cohort size,\ country of recruitment and subject ethnicity, and SNP-disease association\ information including SNP identifier (i.e. RSID), p-value, gene and risk\ allele. Each study is also assigned a trait that best represents the phenotype\ under investigation. When multiple traits are analysed in the same study either\ multiple entries are created, or individual SNPs are annotated with their\ specific traits. Traits are used both to query and visualise the data in the\ Catalog's web form and diagram-based query interfaces.\\ \ \
\ Data extraction and curation for the GWAS Catalog is an expert activity; each\ step is performed by scientists supported by a web-based tracking and data\ entry system which allows multiple curators to search, annotate, verify and\ publish the Catalog data. Papers that qualify for inclusion in the Catalog are\ identified through weekly PubMed searches. They then undergo two levels of\ curation. First all data, including association information for SNPs, traits\ and general information about the study, are extracted by one curator. A second\ curator then performs an additional round of curation to double-check the\ accuracy and consistency of all the information. Finally, an automated pipeline\ performs validation of the extracted data, see the\ Quality control and SNP mapping section below for more\ details. This information is then used for queries and in the production of the\ diagram.\
Data Access
\ The raw data can be explored interactively with the Table Browser, or Data Integrator.\ For automated analysis, the genome annotation can be downloaded from the downloads server\ (gwasCatalog*.txt.gz) or the public MySQL server. Please refer to our\ mailing list archives\ for questions, or our Data Access FAQ for more information.\ \ \\ Previous versions of this track can be found on our archive download server.\
\ \References
\\
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA.\
\
Potential etiologic and functional implications of genome-wide association loci for human diseases\
and traits.\
Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9362-7.\
PMID: 19474294; PMC:
Description
\ \\ Ribosome profiling (ribo-seq) is a technique that takes advantage of NGS\ technology to sequence ribosome-protected mRNA fragments and consequently\ allows the locations of translating ribosomes to be determined at the entire\ transcriptome level (Ingolia et al., 2009).\
\ \\ For a more detailed description of the protocol, see Ingolia et al.\ (2012). For reviews on this technique and its applications, please refer to\ Ingolia (2014) and Michel et al. (2013).\
\ \\ This track displays cumulative ribo-seq data obtained from human cells under\ different conditions and can be used for the exploration of human genomic loci\ that are being translated. The values on the y-axis represent the number of\ ribosome footprint sequence reads at a given position. As of February\ 2016, the track contains data from 9 studies (see References section for\ details). Further details about the aggregated track and additional ribo-seq\ data from these and other studies including data obtained from other organisms\ can be found at the specialized ribo-seq browser\ GWIPS-viz.\
\ \Methods
\ \\ For each study used to generate this track, raw fastq files were downloaded from\ a repository (e.g., NCBI GEO datasets).\ Cutadapt\ was used to trim the relevant adapter sequence from the reads, after which reads\ below 25 nt in length were discarded. The trimmed reads were aligned to\ ribosomal RNA using\ Bowtie\ and aligning reads were discarded. The remaining reads were then aligned to the\ hg38 (GRCh38) genome assembly using Bowtie. An offset of 15 nt (to infer the\ position of the A-site) was added to the most 5' nucleotide coordinate of each\ uniquely-mapped read.\
\ \\ The alignment files from each of the included studies were merged to generate\ this aggregate track.\
\ \\ See individual studies at\ GWIPS-viz for a full\ description of the methods of data acquisition and processing.\
\ \Credits
\ \\ Thanks to Audrey Michel, Stephen Kiniry and GWIPS-viz for providing the data for\ this track. If you wish to cite this track, please reference:\
\ \\
Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM, Mullan JP, Donohue CA, Higgins DG,\
Baranov PV.\
GWIPS-viz: development of a ribo-seq genome browser.\
Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64.\
PMID: 24185699; PMC:
References
\ \Data
\ \\ Battle A, Khan Z, Wang SH, Mitrano A, Ford MJ, Pritchard JK, Gilad Y.\ \ Impact of regulatory variation from RNA to protein.\ Science. 2015 Feb 6;347(6222):664-7.\ PMID: 25657249;\ PMC: PMC4507520\
\ \\ Cenik C, Cenik ES, Byeon GW, Grubert F, Candille SI, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H et al.\ \ Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans.\ Genome Res. 2015 Nov;25(11):1610-21.\ PMID: 26297486;\ PMC: PMC4617958\
\ \ \\ Elkon R, Loayza-Puch F, Korkmaz G, Lopes R, van Breugel PC, Bleijerveld OB, Altelaar AM, Wolf E, Lorenzin F, Eilers M et al.\ \ Myc coordinates transcription and translation to enhance transformation and suppress invasiveness.\ EMBO Rep. 2015 Dec;16(12):1723-36.\ PMID: 26538417;\ PMC: PMC4687422\
\ \\ Jang C, Lahens NF, Hogenesch JB, Sehgal A.\ \ Ribosome profiling reveals an important role for translational control in circadian gene expression.\ Genome Res 2015 Dec;25(12):1836-47.\ PMID: 26338483;\ PMC: PMC4665005\
\ \\ Ji Z, Song R, Regev A, Struhl K.\ \ Many lncRNAs, 5'UTRs, and pseudogenes are translated and some are likely to express functional proteins.\ Elife. 2015 Dec 19;4.\ PMID: 26687005;\ PMC: PMC4739776\
\ \\ Sidrauski C, McGeachy AM, Ingolia NT, Walter P.\ \ The small molecule ISRIB reverses the effects of eIF2α phosphorylation on translation and stress granule assembly.\ Elife. 2015 Feb 26;4.\ PMID: 25719440;\ PMC: PMC4341466\
\ \\ Tanenbaum ME, Stern-Ginossar N, Weissman JS, Vale RD.\ \ Regulation of mRNA translation during mitosis.\ Elife. 2015 Aug 25;4.\ PMID: 26305499;\ PMC: PMC4548207\
\ \\ Tirosh O, Cohen Y, Shitrit A, Shani O, Le-Trilling VT, Trilling M, Friedlander G, Tanenbaum M, Stern-Ginossar N.\ \ The transcription and translation landscapes during human cytomegalovirus infection reveal novel host-pathogen interactions.\ PLoS Pathog. 2015 Nov 24;11(11):e1005288.\ PMID: 26599541;\ PMC: PMC4658056\
\ \\ Werner A, Iwasaki S, McGourty CA, Medina-Ruiz S, Teerikorpi N, Fedrigo I, Ingolia NT, Rape M.\ \ Cell fate determination by ubiquitin-dependent regulation of translation.\ Nature. 2015 Sep 24;525(7570):523-7.\ PMID: 26399832;\ PMC: PMC4602398\
\ \Protocol/Technique
\ \\ Ingolia NT.\ \ Ribosome profiling: new views of translation, from single codons to genome scale.\ Nat Rev Genet. 2014 Mar;15(3):205-13.\ PMID: 24468696\
\ \\
Ingolia NT, Brar GA, Rouskin S, McGeachy AM, Weissman JS.\
\
The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-\
protected mRNA fragments.\
Nat Protoc. 2012 Jul 26;7(8):1534-50.\
PMID: 22836135; PMC:
\
Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS.\
\
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.\
Science. 2009 Apr 10;324(5924):218-23.\
PMID: 19213877; PMC:
\
Michel AM, Baranov PV.\
\
Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale.\
Wiley Interdiscip Rev RNA. 2013 Sep-Oct;4(5):473-90.\
PMID: 23696005; PMC:
Description
\\ This track shows structural variants (SVs) identified by long-read sequencing\ of 945 Han Chinese individuals. The dataset contains 111,288 SVs merged across\ samples using SURVIVOR, including 49,518 deletions, 42,300 insertions,\ 13,503 duplications, 5,595 inversions, and 372 translocations.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Duplications (DUP) - green \
- Inversions (INV) - orange \
- Translocations (TRA) - purple \
\ Filters are available for SV type, SV length, allele frequency, and number of\ supporting samples. For insertions, the item is placed at the insertion site\ with a width of 1 bp. For translocations, only the first breakpoint is shown;\ the second breakpoint chromosome and position are listed in the item details.\
\ \Methods
\\ Gong et al. 2025 performed Oxford Nanopore long-read sequencing of 945\ Han Chinese individuals on PromethION instruments with R9.4 flow cells.\ Reads were aligned to GRCh38.p13 with NGMLR v0.2.7 using ONT-tuned\ parameters, and a joint-calling strategy was used to call SVs at moderate\ coverage: per-sample discovery with\ cuteSV\ v1.0.13, merging of breakpoints within 500 bp across individuals with\ SURVIVOR\ v1.0.6, per-sample re-genotyping of the merged set with LRcaller v1.0, and\ a final BCFtools merge. SVs in centromeric, pericentromeric and gap regions\ were filtered out, yielding 111,288 high-quality SVs: 49,518 deletions,\ 42,300 insertions, 13,503 duplications, 5,595 inversions and 372\ translocations.\
\\ The site-only VCF released at\ \ OMIX accession OED00945268 (OED00945268_Han_945samples_SV.vcf.gz)\ was converted to BED for this track.\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ The raw VCF data was obtained from the\ OMIX\ repository (accession OED00945268) at the National Genomics Data Center (NGDC),\ China National Center for Bioinformation.\
\\ The source VCF also encodes phased per-sample genotypes: the sampleList\ field on the detail page is derived from the SURVIVOR SUPP_VEC bitmask\ and is an ordered list of the 1-based indices of the 945 samples carrying\ each SV. The full per-sample phased VCF can be browsed as a separate track in\ the SVs from 945 Han Chinese entry of\ the Phased Variants track collection.\
\ \Credits
\\ Thanks to Gong et al. for making their structural variant calls publicly available.\
\ \References
\ \\
Gong J, Sun H, Wang K, Zhao Y, Huang Y, Chen Q, Qiao H, Gao Y, Zhao J, Ling Y et al.\
\
Long-read sequencing of 945 Han individuals identifies structural variants associated with\
phenotypic diversity and disease susceptibility.\
Nat Commun. 2025 Feb 10;16(1):1494.\
PMID: 39929826; PMC:
SV len: $svLen
Ins len: $insLen
AF: $alleleFreq
AC: $AC
Samples: $sampleCount\ parent longReadVariants\ shortLabel Han 945 SVs\ skipEmptyFields on\ track han945Sv\ type bigBed 9 +\ urls chr2="hgTracks?position=$$"\ visibility hide\ heartCellAtlas Heart Cell Atlas Heart single cell RNA data from https://heartcellatlas.com 0 100 0 0 0 127 127 127 0 0 0
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\
This track displays data from \
\
\
This track collection contains nine bar chart tracks of RNA expression in the\
human heart where cells are grouped by cell type \
(Heart HCA Cells), age \
(Heart HCA Age), donor \
(Heart HCA Donor), region of the heart \
(Heart HCA Region),\
sample (Heart HCA Sample), sex \
(Heart HCA Sex), source \
(Heart HCA Source), cell\
state (Heart HCA State), \
and 10x chemistry version \
(Heart HCA Version). \
The default track displayed is \
Heart HCA Cells. \
The cell types are colored by which class they belong to according to the following table. \
Display Conventions
\
\
\
\
\
Color \
Cell classification \
neural adipose fibroblast immune muscle lymphoid epithelial endothelial
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Heart HCA Cells subtrack, where the \ bars represent relatively pure cell types. They can give an overview of the cell composition \ within other categories in other subtracks as well.
\ \Method
\\ Healthy heart tissues were obtained from 14 UK and North American transplant\ organ donors ages 40-75. Tissues were taken from deceased donors after\ circulatory death (DCD) and after brain death (DBD). To minimize\ transcriptional degradation, heart tissues were stored and transported on ice\ until freezing or tissue dissociation. Single nuclei were isolated from\ flash-frozen tissue using mechanical homogenization with a glass Dounce tissue\ grinder. Fresh heart tissues were enzymatically dissociated and automatically\ digested using gentleMACS Octo Dissociator. Next, Hoechst-positive single\ nuclei were FACS sorted prior to library preparation. In parallel, Cell\ suspensions from fresh heart tissue were enriched for CD45+ cells using MACS LS\ columns. Libraries of single cell and single nuclei were prepared using 10x\ Genomics 3' v2 or v3. 3' gene expression libraries were sequenced on an\ Illumina HiSeq4000 and NextSeq500. In total 45,870 cells, 78,023 CD45+ enriched\ cells, and 363,213 nuclei were profiled for 11 major cell types of the heart.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Monika Litviňuková, Carlos\ Talavera-Ló, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. \ The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
References
\\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
Description
\\ This track shows the differences between the GRCh38 (hg38) and previous GRCh37 (hg19)\ human genome assemblies, indicating contigs (or portions of contigs) that are new\ to the hg38 assembly.\
\ \\
The following color/score key is used:\
\
\
| color | score | change from hg19 to hg38 |
|---|---|---|
| 0 | New contig added to\ hg38 to update sequence or fill gaps present in hg19 | |
| 500 | Different portions\ of this same contig used in the construction of hg38 and hg19 assemblies | |
| 1000 | Updated version of\ an hg19 contig in which sequence errors have been corrected |
\ Use the score filter to select which categories to show in the display.\
\ \Methods
\\ The contig coordinates were extracted from the AGP files for both assemblies.\ Contigs that matched the same name, same version, and the same specific\ portion of sequence in both assemblies were considered identical between the two\ assemblies and were excluded from this data set. The remaining contigs are shown\ in this track.\
\ \Credits
\\ The data and presentation of this track were prepared by\ Hiram Clawson, UCSC Genome\ Browser engineering.\
\ map 1 group map\ longLabel Contigs New to GRCh38/(hg38), Not Carried Forward from GRCh37/(hg19)\ scoreFilterByRange on\ shortLabel Hg19 Diff\ track hg38ContigDiff\ type bed 9 .\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel Genbank accession:\ visibility hide\ hgmd HGMD Public 2025 bigBed 9 . Human Gene Mutation Database - Public Version 2025 0 100 0 0 0 127 127 127 0 0 0 http://www.hgmd.cf.ac.uk/ac/gene.php?gene=$P&accession=$pDescription
\ \\
\
\
NOTE:
\
HGMD public is intended for use primarily by physicians and other\
professionals concerned with genetic disorders, by genetics researchers, and\
by advanced students in science and medicine. While the HGMD public database is\
open to all academic users, users seeking information about a personal medical\
or genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions.
DOWNLOADS:
\
As requested by Qiagen, this track is not available for download or mirroring but only for limited API queries, see below.\
\ This track shows the genomic positions of variants in the public version of the\ Human Gene Mutation Database (HGMD). \ UCSC does not host any further information and provides only the coordinates of\ mutations.\
\ \\ To get details on a mutation (bibliographic reference, phenotype,\ disease, nucleotide change, etc.), follow the "Link to HGMD" at the top\ of the details page. Mouse over to show the type of variant (substitution, insertion,\ deletion, regulatory or splice variant). For deletions, only start coordinates are shown\ as the end coordinates have not been provided by HGMD. Insertions are located between the two\ annotated nucleic acids.\
\ \\ The HGMD public database is produced at Cardiff University, but is free only\ for academic use. Academic users can register for a free account at the\ HGMD\ User Registration page. Download and commercial use requires a license for the HGMD Professional\ database, which also contains many mutations not yet added to the public version of HGMD public.\ The public version is usually 1-2 years behind the professional version.\
\ \The HGMD database itself does not come with a mapping to genome coordinates,\ but there is a related product called "GenomeTrax" which includes HGMD in the\ UCSC Custom Track format. Contact Qiagen for more information.
\ \Batch queries
\Due to license restrictions, the HGMD data is not available for download or for batch queries in the Table Browser. \ However, it is available for programmatic access via the Global\ Alliance Beacon API, a web service that accepts queries in the form\ (genome, chromosome, position, allele) and returns "true" or "false" depending on whether there\ is information about this allele in the database. For more details see our \ Beacon Server.
\Subscribers of the HGMD database can also download the full database or use the HGMD API to retrieve full details, please contact Qiagen support\ for further information. Academic or non-profit users may be able to obtain a\ limited version of HGMD public from Qiagen.
\ \Display Conventions and Configuration
\ \\ Genomic locations of HGMD variants are labeled with the gene symbol\ and the accession of the mutation, separated by a colon. All other information\ is shown on the respective HGMD variation page, accessible via the\ "Link to HGMD" at the top of the details page.\
\ \HGMD variants are originally annotated on RefSeq transcripts. You can show\ all and only those transcripts annotated by HGMD by activating the HGMD\ subtrack of the track "NCBI RefSeq".
\ \Methods
\ \\ The mappings displayed on this track were obtained from Qiagen\ and reformatted at UCSC as a bigBed file.\
\ \Credits
\ \\ Thanks to HGMD, Frank Schacherer and Rupert Yip from Qiagen for making these data available.\
\ \References
\ \\
Stenson PD, Mort M, Ball EV, Shaw K, Phillips A, Cooper DN.\
\
The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and\
molecular genetics, diagnostic testing and personalized genomic medicine.\
Hum Genet. 2014 Jan;133(1):1-9.\
PMID: 24077912; PMC:
Description
\\ The HGNC is \ responsible for approving unique symbols and names for human loci, including protein \ coding genes, ncRNA genes and pseudogenes, to allow unambiguous scientific communication.\
\ For each known human gene, the HGNC approves a gene name and symbol (short-form abbreviation).\ All approved symbols are stored in the HGNC database, www.genenames.org, a curated online repository of HGNC-approved gene \ nomenclature, gene groups and associated resources including links to genomic, proteomic, \ and phenotypic information. Each symbol is unique and we ensure that each gene is only \ given one approved gene symbol. It is necessary to provide a unique symbol for each gene \ so that we and others can talk about them, and this also facilitates electronic data \ retrieval from publications and databases. In preference, each symbol maintains \ parallel construction in different members of a gene family and can also be \ used in other species, especially other vertebrates including mouse.\ \
Data Access
\\ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For computational analysis, genome annotations are stored in\ a bigBigFile file that can be downloaded from the\ download\ server. Regional or genome-wide annotations can be converted from binary data to human readable\ text using our command line utility bigBedToBed which can be compiled from source code or\ downloaded as a precompiled binary for your system. Files and instructions can be found in the\ utilities directory.\ \ The utility can be used to obtain features within a given range, for example:
\bigBedToBed -chrom=chr6 -start=0 -end=1000000 http://hgdownload.soe.ucsc.edu/gbdb/hg38/hgnc/hgnc.bb stdout\
\
\ \
\ Please refer to our Data Access FAQ\ for more information or our mailing list for archived user questions.
\ \Credits
\\ HGNC Database, HUGO Gene Nomenclature Committee (HGNC), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom www.genenames.org.\ \
References
\\ Tweedie S, Braschi B, Gray KA, Jones TEM, Seal RL, Yates B, Bruford EA. Genenames.org: the HGNC and VGNC resources in 2021. Nucleic Acids Res. PMID: 33152070 PMCID: PMC7779007 DOI: 10.1093/nar/gkaa980\
\ genes 1 bigDataUrl /gbdb/hg38/hgnc/hgnc.bb\ defaultLabelFields symbol\ filterValues.locus_type Y RNA,long non-coding RNA,micro RNA,misc RNA,ribosomal RNA,small nuclear RNA,small nucleolar RNA,transfer RNA,vault RNA,T cell receptor gene,T cell receptor pseudogene,complex locus constituent,endogenous retrovirus,gene with protein product,immunoglobulin gene,immunoglobulin pseudogene,pseudogene,readthrough,unknown\ group genes\ itemRgb on\ labelFields symbol, geneName, name, uniprot_ids, ensembl_gene_id, ucsc_id, refseq_accession\ longLabel HUGO Gene Nomenclature\ mouseOver Symbol: $symbolID: $name
Alias symbol: $alias_symbol
Previous symbols: $prev_symbol\ noScoreFilter on\ searchIndex name\ searchTrix /gbdb/hg38/hgnc/search.ix\ shortLabel HGNC\ skipEmptyFields on\ track hgnc\ type bigBed 9 +\ url https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/$$\ urlLabel HGNC Details:\ hgsvc2Sv HGSVC2 32 SVs bigBed 9 + Structural Variants from 32 Haplotype-Resolved Genomes (HGSVC2 freeze 4, Ebert 2021) 0 100 0 0 0 127 127 127 0 0 0
Description
\\ This track shows structural variants (SVs) from the second phase of the\ Human Genome Structural Variation Consortium (HGSVC2). The callset is\ derived from 32 haplotype-resolved diploid genomes (64 phased haplotypes)\ spanning five 1000 Genomes superpopulations (African, Admixed American,\ East Asian, European, South Asian). Each genome was sequenced with\ PacBio long reads (continuous long-read and HiFi) and phased with\ Strand-seq.\
\\ The track merges the two SV annotation tables from the HGSVC2 v2.0\ integrated callset freeze 4: 111,330 insertions/deletions and 416\ inversions, for a total of 111,746 SVs. Each row is a site-level variant\ with per-site allele count, carrier haplotypes, population-scale allele\ frequencies (imputed from the phased callset back into 1000 Genomes,\ insertions and deletions only) and structural annotations.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Inversions (INV) - orange \
\ Insertions are placed at the insertion site with a width of 1 bp; deletions\ and inversions span the affected reference interval. Filters are available\ for SV type, SV length, carrier-haplotype count, distinct sample count,\ whether the site falls in a Tandem Repeat Finder region and the fraction\ of the variant overlapping segmental duplications.\
\\ The detail page shows, where available:\
- \
- Allele / Sample Count: carrier-haplotype count (MERGE_AC) and\ the number of distinct samples carrying the variant. \
- Population Allele Frequencies (insertions and deletions only):\ overall and per-population (AFR, AMR, EAS, EUR, SAS) allele frequencies\ computed from the imputed 1000 Genomes callset. \
- RefSeq Gene Overlaps: bases of overlap with CDS, 5'/3' UTRs,\ introns, non-coding RNAs, and +/- 5 kb windows around each gene. \
- Gene Constraint: maximum gnomAD pLI and minimum LOEUF upper\ bound for genes overlapping the SV. \
- Reference Context: cytoband, segmental-duplication overlap,\ whether the SV falls in a Tandem Repeat Finder region. \
- Carrier Haplotypes: full list of sample-haplotype IDs (e.g.\ HG00096-h1, HG00514-un) carrying the variant. \
- Inner Inversion Region (INV only): coordinates of the inner\ inverted sequence, distinct from the outer breakpoint interval. \
Methods
\\ Ebert et al. 2021 produced phased haplotype-resolved de novo assemblies for\ 32 diploid samples (64 unrelated haplotypes) across five 1000 Genomes\ superpopulations on the PacBio Sequel II platform, using continuous\ long-read sequencing (CLR, >40x) and high-fidelity sequencing (HiFi,\ >20x). Single-cell Strand-seq data from the same samples were used to\ phase the assemblies without parental trios, yielding N50 contigs >25 Mbp\ at QV > 40. SVs were discovered from the two haplotype assemblies of\ each sample with the Phased Assembly Variant (PAV) caller against GRCh38,\ and candidate SVs were orthogonally supported by at least one of seven\ other sources (read-based callers MELT, PBSV and PALMER; Bionano optical\ mapping; breakpoint k-mer analysis; PAV replication with LRA). This\ yielded the integrated nonredundant callset of 107,590 insertion/deletion\ SVs and 316 inversions. Population-scale allele frequencies (POP_*_AF) were\ obtained by graph-based re-genotyping of the HGSVC2 SVs into the\ 3,202-sample 1000 Genomes short-read cohort with PanGenie (insertions and\ deletions only).\
\\ For display, the HGSVC2 v2.0 freeze-4 annotation tables\ variants_freeze4_sv_insdel.tsv.gz (111,330 DEL+INS) and\ variants_freeze4_sv_inv.tsv.gz (416 INV) were downloaded from the\ \ IGSR HGSVC2 v2.0 integrated-callset directory and merged into a single\ bigBed; type-specific columns (POP_*_AF for insdel, RGN_REF_INNER for\ inversions) are empty on the detail page when they do not apply.\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator, and accessed\ programmatically through our API,\ track=hgsvc2Sv.\
\\ The bigBed is available from\ our\ download server as hgsvc2.bb. Example:\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/hgsvc2.bb -chrom=chr21 -start=0 -end=100000000 stdout.\
\\ The original annotation tables and VCFs are available from the\ \ HGSVC2 v2.0 integrated callset on the IGSR FTP site.\
\ \Credits
\\ Thanks to the Human Genome Structural Variation Consortium (HGSVC) and\ the 1000 Genomes Project for releasing this dataset. Later HGSVC releases\ are also available as UCSC tracks:\ HGSVC3 65 SVs.\
\ \References
\ \ \\
Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W,\
Serra Mari R et al.\
\
Haplotype-resolved diverse human genomes and integrated analysis of structural variation.\
Science. 2021 Apr 2;372(6537).\
PMID: 33632895; PMC:
SV len: $svLen
Ins len: $insLen
Samples: $sampleCount
AC: $AC
AF: $popAllAf\ parent longReadVariants\ shortLabel HGSVC2 32 SVs\ skipEmptyFields on\ track hgsvc2Sv\ type bigBed 9 +\ visibility hide\ hgsvc3Sv HGSVC3 65 SVs bigBed 9 + Structural Variants from 65 Diverse Samples (HGSVC3 ONT+HIFI) 0 100 0 0 0 127 127 127 0 0 0
Description
\\ This track shows structural variants (SVs) from the third phase of the\ Human Genome Structural Variation Consortium (HGSVC3). The callset comes\ from 65 diverse individuals across five continental groups, each sequenced\ with PacBio HiFi (~47x), Oxford Nanopore ultra-long reads (~56x) and\ complemented with Strand-seq, optical mapping, Hi-C and Iso-Seq for\ haplotype-resolved assembly. SVs were discovered from the de novo assemblies\ with PAV v2.4.0.1 and cross-validated by ten additional orthogonal callers.\
\\ The track merges the two final SV annotation tables from the HGSVC3 v1.0\ release on GRCh38: 176,231 insertions/deletions and 300 inversions, for a\ total of 176,531 SVs. Each row is a site-level variant with the list of\ carrier haplotypes and additional structural annotations.\
\\ The same track is also available natively on the T2T-CHM13 (hs1)\ assembly: HGSVC3 independently aligned all haplotype-resolved assemblies\ to both GRCh38 and T2T-CHM13 and released a separate set of annotation\ tables per reference. The hs1 track is built directly from the\ \ HGSVC3 T2T-CHM13 annotation tables (188,224 DEL+INS and 276 INV;\ 188,500 SVs total); no liftOver is involved.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
- Inversions (INV) - orange \
\ Insertions are placed at the insertion site with a width of 1 bp; deletions\ and inversions span the affected reference interval. Filters are available\ for SV type, SV length, carrier-haplotype count, distinct sample count,\ whether the site falls in a Tandem Repeat Finder region and the fraction\ of the variant overlapping segmental duplications.\
\\ The detail page shows, where available:\
- \
- Allele / Sample Count: number of carrier haplotypes (out of the\ 2*65 = 130 phased haplotypes plus unphased "un" entries) and the number of\ distinct samples carrying the variant. \
- Reference / Contig Homology: microhomology length (5',3') at the\ breakpoints in the reference and in the assembly contig (insertions and\ deletions only). \
- Inner Inversion Region: for inversions, the coordinate range of\ the inner inverted sequence, distinct from the outer breakpoint interval. \
- Transposable Element: when the inserted or deleted sequence was\ classified as a known TE family. \
- Segmental Duplication Overlap: fraction of the variant interval\ overlapping UCSC segmental duplications in the reference. \
- Carrier Haplotypes: full list of haplotype IDs (e.g.\ HG00096-h1, HG00096-h2, HG00514-un) carrying the\ variant. \
Methods
\\ Logsdon et al. 2025 produced fully phased hybrid de novo assemblies for 65\ diverse individuals (63 from 1kGP, NA21487 from HapMap, and HG002 from\ GIAB), using PacBio HiFi (Sequel II/Revio, 30-h movies), Oxford Nanopore\ ultra-long sequencing (R9.4.1 PromethION, 96-h runs), Bionano optical\ mapping (DLE-1 on Saphyr 2nd-gen), Strand-seq, Hi-C (Proximo) and Iso-Seq.\ Assemblies were generated with Verkko v1.4.1 (primary) and hifiasm-UL\ v0.19.6 (complementary, especially for centromeres and Yq12), phased with\ the Graphasing pipeline v0.3.1-alpha, and produced 130 haplotype\ assemblies with median N50 of 130 Mbp that close 92% of previous assembly\ gaps (39% of chromosomes at telomere-to-telomere status). SVs were called\ against GRCh38 and T2T-CHM13 with PAV v2.4.1 (plus DipCall and SVIM-asm\ from the same alignments) and cross-validated with an additional ten\ callers (PBSV, Sniffles, Delly, cuteSV, DeBreak, SVIM, DeepVariant,\ Clair3, PEPPER-Margin-DeepVariant for ONT and MELT-LRA/PALMER2 for MEIs).\ Calls were merged with SV-Pop and centromere-satellite / telomere hits\ were filtered. The final GRCh38 release contains 176,231 DEL+INS plus 300\ INV (176,531 SVs total); the T2T-CHM13 release contains 188,224 DEL+INS\ plus 276 INV (188,500 SVs total).\
\\ For display, the two final HGSVC3 v1.0 annotation tables\ variants_GRCh38_sv_insdel_HGSVC2024v1.0.tsv.gz and\ variants_GRCh38_sv_inv_HGSVC2024v1.0.tsv.gz were downloaded from\ the \ IGSR HGSVC3 GRCh38 release directory and merged into a single bigBed.\ The hs1 version uses the parallel\ variants_T2T-CHM13_sv_insdel_HGSVC2024v1.0.tsv.gz and\ variants_T2T-CHM13_sv_inv_HGSVC2024v1.0.tsv.gz tables from the\ \ HGSVC3 T2T-CHM13 release directory; no liftOver is involved on hs1.\ Type-specific columns (HOM_REF/HOM_TIG/TE for insdel; RGN_REF_INNER for\ inversions) are empty on the detail page when they do not apply.\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt and\ \ doc/hs1/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator, and accessed\ programmatically through our API,\ track=hgsvc3Sv.\
\\ The bigBed is available from our download server for both assemblies:\
- \
- GRCh38:\ \ hg38 hgsvc3.bb \
- T2T-CHM13:\ \ hs1 hgsvc3.bb \
\ The original annotation tables are available from the\ \ HGSVC3 release on the IGSR FTP site.\
\ \Credits
\\ Thanks to the Human Genome Structural Variation Consortium (HGSVC) and all\ participating sequencing and analysis centers for making the HGSVC3\ annotation tables publicly available.\
\ \References
\ \ \\
Logsdon GA, Ebert P, Audano PA, Loftus M, Porubsky D, Ebler J, Yilmaz F, Hallast P, Prodanov T, Yoo\
D et al.\
\
Complex genetic variation in nearly complete human genomes.\
Nature. 2025 Aug;644(8076):430-441.\
PMID: 40702183; PMC:
SV len: $svLen
Ins len: $insLen
Samples: $sampleCount
AC: $AC\ parent longReadVariants\ shortLabel HGSVC3 65 SVs\ skipEmptyFields on\ track hgsvc3Sv\ type bigBed 9 +\ visibility hide\ hicAndMicroC Hi-C and Micro-C hic Comparison of Micro-C and In situ Hi-C protocols in H1-hESC and HFFc6 0 100 0 0 0 127 127 127 0 0 0
\
Description
\ These tracks provide heatmaps of chromatin folding data from in situ Hi-C and Micro-C XL \ experiments on the H1-hESC (embryonic stem cells) and HFFc6 (foreskin fibroblasts) cell lines\ (Krietenstein et al., 2020). \ The data indicate how many interactions were detected between regions of the genome. \ A high score between two regions suggests that they are\ probably in close proximity in 3D space within the nucleus of a cell. In the track display, this is\ shown by a more intense color in the heatmap.\\
Display Conventions
\ This is a composite track with data from experiments that compare two protocols on each of two cell\ lines. Individual subtrack settings can be adjusted by clicking the wrench next to the subtrack\ name, and all subtracks can be configured simultaneously using the track controls at the top of the\ page. Note that some controls (specifically, resolution and normalization options) are only\ available in the subtrack-specific configuration. The proximity data in these tracks are displayed\ as heatmaps, with high scores (and more intense colors) corresponding to closer proximity.\\
Draw modes
\ There are three display methods available for Hi-C tracks: square, triangle, and arc.\
\
\ Square mode provides a traditional Hi-C display in which chromosome positions are mapped along the\ top-left-to-bottom-right diagonal, and interaction values are plotted on both sides of that diagonal\ to form a square. The upper-left corner of the square corresponds to the left-most position of the\ window in view, while the bottom-right corner corresponds to the right-most position of the window.\
\ The color shade at any point within the square shows the proximity score for two genomic regions:\ the region where a vertical line drawn from that point intersects with the diagonal, and the region\ where a horizontal line from that point intersects with the diagonal. A point directly on the\ diagonal shows the score for how proximal a region is to itself (scores on the diagonal are usually\ quite high unless no data are available). A point at the extreme bottom left of the square shows the\ score for how proximal the left-most position within the window is to the right-most position within\ the window.\
\ In triangle mode, the display is quite similar to square except that only the top half of the square\ is drawn (eliminating the redundancy), and the image is rotated so that the diagonal of the square\ now lies on the horizontal axis. This display consumes less vertical space in the image, although it\ may be more difficult to ascertain exactly which positions correspond to a point within the\ triangle.\
\ In arc mode, simple arcs are drawn between the centers of interacting regions. The color of each arc\ corresponds to the proximity score. Self-interactions are not displayed.\
\
Score normalization settings
\ Score values for this type of display correspond to how close two genomic regions are in 3D space.\ A high score indicates more links were formed between them in the experiment, which suggests that\ the regions are near to each other. A low score suggests that the regions are farther apart. High\ scores are displayed with a more intense color value; low scores are displayed in paler shades.\\ There are four score values available in this display: NONE, VC, VC_SQRT, and KR. NONE provides raw,\ un-normalized counts for the number of interactions between regions. VC, or Vanilla Coverage,\ normalization (Lieberman-Aiden et al., 2009) and the VC_SQRT variant normalize these count\ values based on the overall count values for each of the two interacting regions. Knight-Ruiz, or\ KR, matrix balancing (Knight and Ruiz, 2013) provides an alternative normalization method where the\ row and column sums of the contact matrix equal 1.\
\ Color intensity in the heatmap goes up to indicate higher scores, but eventually saturates at a\ maximum beyond which all scores share the same color intensity. The value of this maximum score for\ saturation can be set manually by un-checking the "Auto-scale" box. When the\ "Auto-scale" box is checked, it automatically sets the saturation maximum to be double\ (2x) the median score in the current display window.\
\
Resolution settings
\ The resolution for each track is measured in base pairs and represents the size of the bins into\ which proximity data are gathered. The list of available resolutions ranges from 1kb to 10MB. There\ is also an "Auto" setting, which attempts to use the coarsest resolution that still\ displays at least 500 bins in the current window.\\
Methods
\ Cells from the H1-hESC and HFFc6 cell lines were processed using two protocols and submitted to\ the 4D Nucleome Data Coordination and Integration Center (4D Nucleome). The data from the experimental replicates were then combined\ to create a contact matrix for each cell line, which was then processed to create binary\ heatmap files like the .hic files used by this track.\\ The first protocol, in situ Hi-C, was published in 2014 as a technique for obtaining full-genome\ proximity data while keeping the cell nucleus intact (Rao et al., 2014). This method uses a\ restriction enzyme to cleave DNA before linking. The second protocol, Micro-C XL, is an update to\ the Micro-C method of obtaining chromatin conformation data (Hsieh et al., 2016, Hsieh\ et al., 2015), and has largely supplanted the original. Both the original Micro-C and the\ updated version are variants of Hi-C chromatin conformation capture that use micrococcal nuclease to\ segment the genome before linking. This results in data sets with resolution down to the nucleosome\ level. The original Micro-C method had difficulty recovering higher order interactions, and the\ updated protocol makes use of additional cross-linking chemicals to address that issue.\
\ We downloaded the .hic contact matrix files with the following accessions from the 4D Nucleome\ Data Portal:\ 4DNFI18Q799K,\ 4DNFI2TK7L2F,\ 4DNFIFLJLIS5, and\ 4DNFIQYQWPF5.\ The files are parsed for display using the Straw library from the Aiden lab at Baylor College\ of Medicine.\
Data Access
\ The data for this track can be explored interactively with the Table Browser in the\ interact format. Direct access to the raw data files\ in .hic format can be obtained from the 4D Nucleome Data Portal at the URL provided in the Methods\ section or from our own download server. The following files for this track can be found in the\ /gbdb/hg38/hic/\ subdirectory: 4DNFI18Q799K.hic, 4DNFI2TK7L2F.hic, 4DNFIFLJLIS5.hic, 4DNFIQYQWPF5.hic. The name\ of each file corresponds to its identifier at the Data Portal. Details on working with .hic files\ can be found at https://www.aidenlab.org/documentation.html.\\
References
\ Hsieh TS, Fudenberg G, Goloborodko A, Rando OJ.\ \ Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.\ Nat Methods. 2016 Dec;13(12):1009-1011.\ PMID: 27723753\\ Knight P, Ruiz D.\ \ A fast algorithm for matrix balancing.\ IMA J Numer Anal. 2013 Jul;33(3):1029-1047.\
\ Krietenstein N, Abraham S, Venev SV, Abdennur N, Gibcus J, Hsieh TS, Parsi KM, Yang L, Maehr R,\ Mirny LA et al.\ \ Ultrastructural Details of Mammalian Chromosome Architecture.\ Mol Cell. 2020 May 7;78(3):554-565.e7.\ PMID: 32213324\
\
Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR,\
Sabo PJ, Dorschner MO et al.\
\
Comprehensive mapping of long-range interactions reveals folding principles of the human genome.\
Science. 2009 Oct 9;326(5950):289-93.\
PMID: 19815776; PMC:
\
Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD,\
Lander ES et al.\
\
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.\
Cell. 2014 Dec 18;159(7):1665-80.\
PMID: 25497547; PMC:
Description
\ \\ This track shows multiple alignments of 470 mammal\ assemblies and measurements of evolutionary conservation\ from the Michael Hiller Lab. There is some duplication of different assemblies for the\ same species, hence there are 431 distinct species in this collection.\
\ \\ The multiple alignments were generated using multiz and\ other tools in the UCSC/Penn State Bioinformatics\ comparative genomics alignment pipeline.\ Conserved elements identified by phastCons are also displayed in\ this track.\
\ \
\ The base-wise conservation scores are computed using two methods\ phastCons and phyloP from the\ PHAST package,\ for all species.\
\ \\ PhastCons (which has been used in previous Conservation tracks) is a hidden\ Markov model-based method that estimates the probability that each\ nucleotide belongs to a conserved element, based on the multiple alignment.\ It considers not just each individual alignment column, but also its\ flanking columns. By contrast, phyloP separately measures conservation at\ individual columns, ignoring the effects of their neighbors. As a\ consequence, the phyloP plots have a less smooth appearance than the\ phastCons plots, with more "texture" at individual sites. The two methods\ have different strengths and weaknesses. PhastCons is sensitive to "runs"\ of conserved sites, and is therefore effective for picking out conserved\ elements. PhyloP, on the other hand, is more appropriate for evaluating\ signatures of selection at particular nucleotides or classes of nucleotides\ (e.g., third codon positions, or first positions of miRNA target sites).\
\ \Assemblies
\\ The genome assemblies are from a variety of sources. Some are equivalent\ to UCSC genome browser assemblies, some are from NCBI Genbank assemblies,\ and some are from the DNA Zoo.\ When available in the UCSC browser system, links are provided in the table\ below. Otherwise, links are provided to source locations for the assemblies.\
\\
\\ \\
\ count \common \
nameclade \scientific \
nameassembly \taxon id \\ 1 \human \primates \Homo sapiens \Dec. 2013 (GRCh38/hg38) \9606 \\ 2 \chimpanzee \Primates \Pan troglodytes \Jan. 2018 (Clint_PTRv2/panTro6) \9598 \\ 3 \pygmy chimpanzee \Primates \Pan paniscus \May 2020 (Mhudiblu_PPA_v0/panPan3) \9597 \\ 4 \western lowland gorilla \Primates \Gorilla gorilla gorilla \Aug. 2019 (Kamilah_GGO_v0/gorGor6) \9595 \\ 5 \Sumatran orangutan \Primates \Pongo abelii \Jan. 2018 (Susie_PABv2/ponAbe3) \9601 \\ 6 \northern white-cheeked gibbon \Primates \Nomascus leucogenys \HLnomLeu4 GCA_006542625.1 \61853 \\ 7 \silvery gibbon \Primates \Hylobates moloch \HLhylMol2 GCA_009828535.2 \81572 \\ 8 \pig-tailed macaque \Primates \Macaca nemestrina \Mar. 2015 (Mnem_1.0/macNem1) \9545 \\ 9 \gelada \Primates \Theropithecus gelada \HLtheGel1 GCA_003255815.1 \9565 \\ 10 \crab-eating macaque \Primates \Macaca fascicularis \HLmacFas6 GCA_012559485.1 \9541 \\ 11 \Mona monkey \Primates \Cercopithecus mona \HLcerMon1 GCA_014849445.1 \36226 \\ 12 \Ugandan red Colobus \Primates \Piliocolobus tephrosceles \HLpilTep2 GCA_002776525.3 \591936 \\ 13 \Angolan colobus \Primates \Colobus angolensis palliatus \Mar. 2015 (Cang.pa_1.0/colAng1) \336983 \\ 14 \drill \Primates \Mandrillus leucophaeus \Mar. 2015 (Mleu.le_1.0/manLeu1) \9568 \\ 15 \sooty mangabey \Primates \Cercocebus atys \Mar. 2015 (Caty_1.0/cerAty1) \9531 \\ 16 \olive baboon \Primates \Papio anubis \HLpapAnu5 GCA_008728515.1 \9555 \\ 17 \mandrill \Primates \Mandrillus sphinx \HLmanSph1 GCA_004802615.1 \9561 \\ 18 \Hanuman langur \Primates \Semnopithecus entellus \HLsemEnt1 GCA_004025065.1_SemEnt_v1_BIUU \88029 \\ 19 \Rhesus monkey \Primates \Macaca mulatta \Feb. 2019 (Mmul_10/rheMac10) \9544 \\ 20 \Japanese macaque \Primates \Macaca fuscata \DNA zoo Macaca fuscata \9542 \\ 21 \Francois's langur \Primates \Trachypithecus francoisi \HLtraFra1 GCA_009764315.1 \54180 \\ 22 \black snub-nosed monkey \Primates \Rhinopithecus bieti \Aug. 2016 (ASM169854v1/rhiBie1) \61621 \\ 23 \golden snub-nosed monkey \Primates \Rhinopithecus roxellana \HLrhiRox2 GCA_007565055.1 \61622 \\ 24 \Red shanked douc langur \Primates \Pygathrix nemaeus \HLpygNem1 GCA_004024825.1_PygNem_v1_BIUU \54133 \\ 25 \De Brazza's monkey \Primates \Cercopithecus neglectus \HLcerNeg1 GCA_004027615.1_CertNeg_v1_BIUU \36227 \\ 26 \proboscis monkey \Primates \Nasalis larvatus \Nov. 2014 (Charlie1.0/nasLar1) \43780 \\ 27 \Allen's swamp monkey \Primates \Allenopithecus nigroviridis \DNA zoo Allenopithecus nigroviridis \54135 \\ 28 \green monkey \Primates \Chlorocebus sabaeus \Mar. 2014 (Chlorocebus_sabeus 1.1/chlSab2) \60711 \\ 29 \red guenon \Primates \Erythrocebus patas \HLeryPat1 GCA_004027335.1_EryPat_v1_BIUU \9538 \\ 30 \white-faced saki \Primates \Pithecia pithecia \HLpitPit1 GCA_004026645.1_PitPit_v1_BIUU \43777 \\ 31 \black-handed spider monkey \Primates \Ateles geoffroyi \HLateGeo1 GCA_004024785.1_AteGeo_v1_BIUU \9509 \\ 32 \Ma's night monkey \Primates \Aotus nancymaae \Jun. 2017 (Anan_2.0/aotNan1) \37293 \\ 33 \Bolivian titi \Primates \Plecturocebus donacophilus \HLpleDon1 GCA_004027715.1_CalDon_v1_BIUU \230833 \\ 34 \mantled howler monkey \Primates \Alouatta palliata \HLaloPal1 GCA_004027835.1_AloPal_v1_BIUU \30589 \\ 35 \Bolivian squirrel monkey \Primates \Saimiri boliviensis \DNA zoo Saimiri boliviensis \27679 \\ 36 \tamarin \Primates \Saguinus imperator \HLsagImp1 GCA_004024885.1_SagImp_v1_BIUU \9491 \\ 37 \Bolivian squirrel monkey \Primates \Saimiri boliviensis boliviensis \Oct. 2011 (Broad/saiBol1) \39432 \\ 38 \white-tufted-ear marmoset \Primates \Callithrix jacchus \HLcalJac4 GCA_011100555.1_mCalJac1.pat.X \9483 \\ 39 \pygmy marmoset \Primates \Callithrix pygmaea \DNA zoo Callithrix pygmaea \9493 \\ 40 \tufted capuchin \Primates \Sapajus apella \HLsapApe1 GCA_009761245.1 \9515 \\ 41 \Panamanian white-faced capuchin \Primates \Cebus capucinus imitator \Apr. 2016 (Cebus_imitator-1.0/cebCap1) \2715852 \\ 42 \white-fronted capuchin \Primates \Cebus albifrons \HLcebAlb1 GCA_004027755.1_CebAlb_v1_BIUU \9514 \\ 43 \aye-aye \Primates \Daubentonia madagascariensis \HLdauMad1 GCA_004027145.1_DauMad_v1_BIUU \31869 \\ 44 \Coquerel's sifaka \Primates \Propithecus coquereli \Mar. 2015 (Pcoq_1.0/proCoq1) \379532 \\ 45 \babakoto \Primates \Indri indri \HLindInd1 GCA_004363605.1_IndInd_v1_BIUU \34827 \\ 46 \brown lemur \Primates \Eulemur fulvus \HLeulFul1 GCA_004027275.1_EulFul_v1_BIUU \13515 \\ 47 \Sclater's lemur \Primates \Eulemur flavifrons \Aug. 2015 (Eflavifronsk33QCA/eulFla1) \87288 \\ 48 \Ring-tailed lemur \Primates \Lemur catta \HLlemCat1 GCA_004024665.1_LemCat_v1_BIUU \9447 \\ 49 \greater bamboo lemur \Primates \Prolemur simus \HLproSim1 GCA_003258685.1 \1328070 \\ 50 \mongoose lemur \Primates \Eulemur mongoz \DNA zoo Eulemur mongoz \34828 \\ 51 \Sclater's lemur \Primates \Eulemur flavifrons \DNA zoo Eulemur flavifrons \87288 \\ 52 \Lesser dwarf lemur \Primates \Cheirogaleus medius \HLcheMed1 GCA_008086735.1 \9460 \\ 53 \black lemur \Primates \Eulemur macaco \Aug. 2015 (Emacaco_refEf_BWA_oneround/eulMac1) \30602 \\ 54 \Philippine tarsier \Primates \Carlito syrichta \Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2) \1868482 \\ 55 \gray mouse lemur \Primates \Microcebus murinus \Feb. 2017 (Mmur_3.0/micMur3) \30608 \\ 56 \Northern giant mouse lemur \Primates \Mirza zaza \HLmirZaz1 GCA_008750895.1 \339999 \\ 57 \Coquerel's mouse lemur \Primates \Mirza coquereli \HLmirCoq1 GCA_004024645.1_MizCoq_v1_BIUU \47180 \\ 58 \mouse lemur \Primates \Microcebus sp. 3 GT-2019 \HLmicSpe31 GCA_008750915.1 \2508170 \\ 59 \Northern rufous mouse lemur \Primates \Microcebus tavaratra \HLmicTav1 GCA_008750935.1 \143351 \\ 60 \slow loris \Primates \Nycticebus coucang \HLnycCou1 GCA_004027815.1_NycCou_v1_BIUU \9470 \\ 61 \small-eared galago \Primates \Otolemur garnettii \Mar. 2011 (Broad/otoGar3) \30611 \\ 62 \Sunda flying lemur \Euarchontoglires \Galeopterus variegatus \HLgalVar2 GCA_004027255.2 \482537 \\ 63 \Chinese tree shrew \Euarchontoglires \Tupaia chinensis \Jan 2013 (TupChi_1.0/tupChi1) \246437 \\ 64 \northern tree shrew \Euarchontoglires \Tupaia belangeri \Dec. 2006 (Broad/tupBel1) \37347 \\ 65 \puma \Carnivora \Puma concolor \HLpumCon1 GCA_003327715.1_PumCon1.0 \9696 \\ 66 \Amur tiger \Carnivora \Panthera tigris altaica \06 Sep 2013 (PanTig1.0/panTig1) \74533 \\ 67 \Clouded leopard \Carnivora \Neofelis nebulosa \DNA zoo Neofelis nebulosa \61452 \\ 68 \leopard \Carnivora \Panthera pardus \HLpanPar1 GCA_001857705.1_PanPar1.0 \9691 \\ 69 \bearded seal \Carnivora \Erignathus barbatus \DNA zoo Erignathus barbatus \39304 \\ 70 \jaguar \Carnivora \Panthera onca \HLpanOnc1 GCA_004023805.1_PanOnc_v1_BIUU \9690 \\ 71 \harbor seal \Carnivora \Phoca vitulina \HLphoVit1 GCA_004348235.1 \9720 \\ 72 \cheetah \Carnivora \Acinonyx jubatus \HLaciJub2 GCF_003709585.1_Aci_jub_2 \32536 \\ 73 \gray seal \Carnivora \Halichoerus grypus \HLhalGry1 GCA_012393455.1 \9711 \\ 74 \Hawaiian monk seal \Carnivora \Neomonachus schauinslandi \Jun. 2017 (ASM220157v1/neoSch1) \29088 \\ 75 \Weddell seal \Carnivora \Leptonychotes weddellii \Mar 2013 (LepWed1.0/lepWed1) \9713 \\ 76 \jaguar \Carnivora \Panthera onca \DNA zoo Panthera onca \9690 \\ 77 \Amur leopard cat \Carnivora \Prionailurus bengalensis euptilurus \HLpriBen1 GCA_005406085.1 \300877 \\ 78 \Asian black bear \Carnivora \Ursus thibetanus thibetanus \HLursThi1 GCA_009660055.1 \441215 \\ 79 \Spanish lynx \Carnivora \Lynx pardinus \HLlynPar1 GCA_900661375.1 \191816 \\ 80 \Southern elephant seal \Carnivora \Mirounga leonina \HLmirLeo1 GCA_011800145.1 \9715 \\ 81 \Canada lynx \Carnivora \Lynx canadensis \HLlynCan1 GCA_007474595.1 \61383 \\ 82 \Northern elephant seal \Carnivora \Mirounga angustirostris \DNA zoo Mirounga angustirostris \9716 \\ 83 \lion \Carnivora \Panthera leo \HLpanLeo1 GCA_008795835.1 \9689 \\ 84 \walrus \Carnivora \Odobenus rosmarus \DNA zoo Odobenus rosmarus \9707 \\ 85 \northern fur seal \Carnivora \Callorhinus ursinus \HLcalUrs1 GCA_003265705.1 \34884 \\ 86 \Pacific walrus \Carnivora \Odobenus rosmarus divergens \Jan 2013 (Oros_1.0/odoRosDiv1) \9708 \\ 87 \giant panda \Carnivora \Ailuropoda melanoleuca \HLailMel2 GCA_002007445.2 \9646 \\ 88 \California sea lion \Carnivora \Zalophus californianus \HLzalCal1 GCA_009762305.1_mZalCal1.pri \9704 \\ 89 \Steller sea lion \Carnivora \Eumetopias jubatus \HLeumJub1 GCA_004028035.1 \34886 \\ 90 \domestic cat \Carnivora \Felis catus \Nov. 2017 (Felis_catus_9.0/felCat9) \9685 \\ 91 \jaguarundi \Carnivora \Puma yagouaroundi \HLpumYag1 GCA_014898765.1 \1608482 \\ 92 \grizzly bear \Carnivora \Ursus arctos horribilis \HLursArc1 GCA_003584765.1 \116960 \\ 93 \polar bear \Carnivora \Ursus maritimus \09 May-2014 (UrsMar_1.0/ursMar1) \29073 \\ 94 \antarctic fur seal \Carnivora \Arctocephalus gazella \HLarcGaz2 GCA_900642305.1 \37190 \\ 95 \American black bear \Carnivora \Ursus americanus \HLursAme1 GCA_003344425.1 \9643 \\ 96 \American black bear \Carnivora \Ursus americanus \DNA zoo Ursus americanus \9643 \\ 97 \black-footed cat \Carnivora \Felis nigripes \HLfelNig1 GCA_004023925.1_FelNig_v1_BIUU \61379 \\ 98 \fossa \Carnivora \Cryptoprocta ferox \DNA zoo Cryptoprocta ferox \94188 \\ 99 \red fox \Carnivora \Vulpes vulpes \HLvulVul1 GCA_003160815.1 \9627 \\ 100 \dog \Carnivora \Canis lupus familiaris \Mar. 2020 (UU_Cfam_GSD_1.0/canFam4) \9615 \\ 101 \Arctic fox \Carnivora \Vulpes lagopus \HLvulLag1 GCA_004023825.1_VulLag_v1_BIUU \494514 \\ 102 \African hunting dog \Carnivora \Lycaon pictus \DNA zoo Lycaon pictus \9622 \\ 103 \dingo \Carnivora \Canis lupus dingo \HLcanLupDin1 GCA_003254725.1 \286419 \\ 104 \dog \Carnivora \Canis lupus familiaris \May 2019 (UMICH_Zoey_3.1/canFam5) \9615 \\ 105 \kinkajou \Carnivora \Potos flavus \DNA zoo Potos flavus \29067 \\ 106 \African hunting dog \Carnivora \Lycaon pictus \HLlycPic2 GCA_004216515.1 \9622 \\ 107 \lesser panda \Carnivora \Ailurus fulgens \DNA zoo Ailurus fulgens \9649 \\ 108 \spotted hyena \Carnivora \Crocuta crocuta \HLcroCro1 GCA_008692635.1 \9678 \\ 109 \striped hyena \Carnivora \Hyaena hyaena \HLhyaHya1 GCA_003009895.1 \95912 \\ 110 \Asian palm civet \Carnivora \Paradoxurus hermaphroditus \HLparHer1 GCA_004024585.1_ParHer_v1_BIUU \71117 \\ 111 \White-nosed coati \Carnivora \Nasua narica \DNA zoo Nasua narica \352831 \\ 112 \sable \Carnivora \Martes zibellina \HLmarZib1 GCA_012583365.1 \36722 \\ 113 \wolverine \Carnivora \Gulo gulo \HLgulGul1 GCA_900006375.2 \48420 \\ 114 \raccoon \Carnivora \Procyon lotor \DNA zoo Procyon lotor \9654 \\ 115 \Cacomistle \Carnivora \Bassariscus sumichrasti \DNA zoo Bassariscus sumichrasti \392507 \\ 116 \western spotted skunk \Carnivora \Spilogale gracilis \HLspiGra1 GCA_004023965.1_SpiGra_v1_BIUU \30551 \\ 117 \North American badger \Carnivora \Taxidea taxus jeffersonii \HLtaxTax1 GCA_003697995.1 \2282171 \\ 118 \ratel \Carnivora \Mellivora capensis \HLmelCap1 GCA_004024625.1_MelCap_v1_BIUU \9664 \\ 119 \meerkat \Carnivora \Suricata suricatta \HLsurSur2 GCA_004023905.1_SurSur_v1_BIUU \37032 \\ 120 \meerkat \Carnivora \Suricata suricatta \HLsurSur1 GCA_006229205.1 \37032 \\ 121 \banded mongoose \Carnivora \Mungos mungo \HLmunMug1 GCA_004023785.1_MunMun_v1_BIUU \210652 \\ 122 \dwarf mongoose \Carnivora \Helogale parvula \HLhelPar1 GCA_004023845.1_HelPar_v1_BIUU \210647 \\ 123 \Northern American river otter \Carnivora \Lontra canadensis \HLlonCan1 GCA_010015895.1 \76717 \\ 124 \giant otter \Carnivora \Pteronura brasiliensis \DNA zoo Pteronura brasiliensis \9672 \\ 125 \giant otter \Carnivora \Pteronura brasiliensis \HLpteBra1 GCA_004024605.1_PteBra_v1_BIUU \9672 \\ 126 \Southern sea otter \Carnivora \Enhydra lutris nereis \Jun. 2019 (ASM641071v1/enhLutNer1) \1049777 \\ 127 \Northern sea otter \Carnivora \Enhydra lutris kenyoni \Sep. 2017 (ASM228890v2/enhLutKen1) \391180 \\ 128 \Eurasian river otter \Carnivora \Lutra lutra \HLlutLut1 GCA_902655055.1 \9657 \\ 129 \ermine \Carnivora \Mustela erminea \HLmusErm1 GCA_009829155.1 \36723 \\ 130 \American mink \Carnivora \Neovison vison \HLneoVis1 GCA_900108605.1_NNQGG.v01 \452646 \\ 131 \European polecat \Carnivora \Mustela putorius \HLmusPut1 GCA_902460205.1 \9668 \\ 132 \domestic ferret \Carnivora \Mustela putorius furo \HLmusFur2 GCA_011764305.1 \9669 \\ 133 \Brazilian tapir \Laurasiatheria \Tapirus terrestris \HLtapTer1 GCA_004025025.1_TapTer_v1_BIUU \9801 \\ 134 \greater Indian rhinoceros \Laurasiatheria \Rhinoceros unicornis \DNA zoo Rhinoceros unicornis \9809 \\ 135 \Asiatic tapir \Laurasiatheria \Tapirus indicus \HLtapInd1 GCA_004024905.1_TapInd_v1_BIUU \9802 \\ 136 \Asiatic tapir \Laurasiatheria \Tapirus indicus \DNA zoo Tapirus indicus \9802 \\ 137 \black rhinoceros \Laurasiatheria \Diceros bicornis \HLdicBic1 GCA_004027315.2 \9805 \\ 138 \Sumatran rhinoceros \Laurasiatheria \Dicerorhinus sumatrensis sumatrensis \HLdicSum1 GCA_002844835.1_ASM284483v1 \310712 \\ 139 \northern white rhinoceros \Laurasiatheria \Ceratotherium simum cottoni \HLcerSimCot1 GCA_004027795.1_CerCot_v1_BIUU \310713 \\ 140 \southern white rhinoceros \Laurasiatheria \Ceratotherium simum simum \May 2012 (CerSimSim1.0/cerSim1) \73337 \\ 141 \Equus burchelli boehmi \Laurasiatheria \Equus burchellii boehmi \DNA zoo Equus burchellii boehmi \89250 \\ 142 \horse \Laurasiatheria \Equus caballus \Jan. 2018 (EquCab3.0/equCab3) \9796 \\ 143 \Przewalski's horse \Laurasiatheria \Equus przewalskii \Jun 2014 (Burgud/equPrz1) \9798 \\ 144 \ass \Laurasiatheria \Equus asinus \HLequAsi1 GCA_001305755.1_ASM130575v1 \9793 \\ 145 \donkey \Laurasiatheria \Equus asinus asinus \HLequAsiAsi2 GCA_003033725.1 \83772 \\ 146 \Tree pangolin \Laurasiatheria \Manis tricuspis \HLmanTri1 GCA_004765945.1 \358128 \\ 147 \Tree pangolin \Laurasiatheria \Manis tricuspis \DNA zoo Manis tricuspis \358128 \\ 148 \Chinese pangolin \Laurasiatheria \Manis pentadactyla \HLmanPen2 GCA_014570555.1 \143292 \\ 149 \Chinese pangolin \Laurasiatheria \Manis pentadactyla \Aug 2014 (M_pentadactyla-1.1.1/manPen1) \143292 \\ 150 \Malayan pangolin \Laurasiatheria \Manis javanica \HLmanJav1 GCA_001685135.1_ManJav1.0 \9974 \\ 151 \Malayan pangolin \Laurasiatheria \Manis javanica \HLmanJav2 GCA_014570535.1 \9974 \\ 152 \Hispaniolan solenodon \Laurasiatheria \Solenodon paradoxus \HLsolPar1 GCA_004363575.1_SolPar_v1_BIUU \79805 \\ 153 \eastern mole \Laurasiatheria \Scalopus aquaticus \HLscaAqu1 GCA_004024925.1_ScaAqu_v1_BIUU \71119 \\ 154 \Iberian mole \Laurasiatheria \Talpa occidentalis \HLtalOcc1 GCA_014898055.1 \50954 \\ 155 \gracile shrew mole \Laurasiatheria \Uropsilus gracilis \HLuroGra1 GCA_004024945.1_UroGra_v1_BIUU \182669 \\ 156 \star-nosed mole \Laurasiatheria \Condylura cristata \Mar 2012 (ConCri1.0/conCri1) \143302 \\ 157 \western European hedgehog \Laurasiatheria \Erinaceus europaeus \May 2012 (EriEur2.0/eriEur2) \9365 \\ 158 \European shrew \Laurasiatheria \Sorex araneus \Aug. 2008 (Broad/sorAra2) \42254 \\ 159 \Antarctic minke whale \Cetartiodactyla \Balaenoptera bonaerensis \HLbalBon1 GCA_000978805.1_ASM97880v1 \33556 \\ 160 \grey whale \Cetartiodactyla \Eschrichtius robustus \HLescRob1 GCA_004363415.1_EscRob_v1_BIUU \9764 \\ 161 \sperm whale \Cetartiodactyla \Physeter catodon \Sep. 2013 (Physeter_macrocephalus-2.0.2/phyCat1) \9755 \\ 162 \sperm whale \Cetartiodactyla \Physeter catodon \HLphyCat2 GCA_002837175.2 \9755 \\ 163 \Yangtze River dolphin \Cetartiodactyla \Lipotes vexillifer \31 Jul 2013 (Lipotes_vexillifer_v1/lipVex1) \118797 \\ 164 \beluga whale \Cetartiodactyla \Delphinapterus leucas \HLdelLeu2 GCA_002288925.3 \9749 \\ 165 \hippopotamus \Cetartiodactyla \Hippopotamus amphibius \HLhipAmp3 GCA_004027065.2 \9833 \\ 166 \hippopotamus \Cetartiodactyla \Hippopotamus amphibius \HLhipAmp1 GCA_002995585.1_ASM299558v1 \9833 \\ 167 \harbor porpoise \Cetartiodactyla \Phocoena phocoena \DNA zoo Phocoena phocoena \9742 \\ 168 \harbor porpoise \Cetartiodactyla \Phocoena phocoena \HLphoPho1 GCA_004363495.1_PhoPho_v1_BIUU \9742 \\ 169 \Wild Bactrian camel \Cetartiodactyla \Camelus ferus \HLcamFer3 GCA_009834535.1 \419612 \\ 170 \killer whale \Cetartiodactyla \Orcinus orca \Jan. 2013 (Oorc_1.1/orcOrc1) \9733 \\ 171 \Bactrian camel \Cetartiodactyla \Camelus bactrianus \HLcamBac1 GCA_000767855.1_Ca_bactrianus_MBC_1.0 \9837 \\ 172 \Indo-pacific humpbacked dolphin \Cetartiodactyla \Sousa chinensis \HLsouChi1 GCA_007760645.1 \103600 \\ 173 \Arabian camel \Cetartiodactyla \Camelus dromedarius \HLcamDro2 GCA_000803125.3 \9838 \\ 174 \alpaca \Cetartiodactyla \Vicugna pacos \Mar. 2013 (Vicugna_pacos-2.0.1/vicPac2) \30538 \\ 175 \common bottlenose dolphin \Cetartiodactyla \Tursiops truncatus \HLturTru4 GCA_011762595.1_mTurTru1.mat.Y \9739 \\ 176 \Indo-pacific bottlenose dolphin \Cetartiodactyla \Tursiops aduncus \HLturAdu1 GCA_003227395.1 \79784 \\ 177 \Indo-pacific bottlenose dolphin \Cetartiodactyla \Tursiops aduncus \DNA zoo Tursiops aduncus \79784 \\ 178 \common bottlenose dolphin \Cetartiodactyla \Tursiops truncatus \Oct. 2011 (Baylor Ttru_1.4/turTru2) \9739 \\ 179 \common bottlenose dolphin \Cetartiodactyla \Tursiops truncatus \HLturTru3 GCA_001922835.1_NIST_Tur_tru_v1 \9739 \\ 180 \pig \Cetartiodactyla \Sus scrofa \Feb. 2017 (Sscrofa11.1/susScr11) \9823 \\ 181 \okapi \Cetartiodactyla \Okapia johnstoni \DNA zoo Okapia johnstoni \86973 \\ 182 \Masai giraffe \Cetartiodactyla \Giraffa tippelskirchi \HLgirTip1 GCA_001651235.1_ASM165123v1 \439328 \\ 183 \water buffalo \Cetartiodactyla \Bubalus bubalis \HLbubBub2 GCA_003121395.1 \89462 \\ 184 \zebu cattle \Cetartiodactyla \Bos indicus \HLbosInd2 GCA_002933975.1 \9915 \\ 185 \cattle \Cetartiodactyla \Bos taurus \Apr. 2018 (ARS-UCD1.2/bosTau9) \9913 \\ 186 \wild yak \Cetartiodactyla \Bos mutus \HLbosMut2 GCA_007646595.3 \72004 \\ 187 \greater kudu \Cetartiodactyla \Tragelaphus strepsiceros \HLtraStr1 GCA_006410795.1 \9946 \\ 188 \aoudad \Cetartiodactyla \Ammotragus lervia \HLammLer1 GCA_002201775.1_ALER1.0 \9899 \\ 189 \goat \Cetartiodactyla \Capra hircus \HLcapHir2 GCA_001704415.1_ARS1 \9925 \\ 190 \wild goat \Cetartiodactyla \Capra aegagrus \HLcapAeg1 GCA_000765075.1 \9923 \\ 191 \chiru \Cetartiodactyla \Pantholops hodgsonii \May 2013 (PHO1.0/panHod1) \59538 \\ 192 \white-tailed deer \Cetartiodactyla \Odocoileus virginianus \HLodoVir3 GCA_014726795.1 \9874 \\ 193 \bighorn sheep \Cetartiodactyla \Ovis canadensis \HLoviCan2 GCA_004026945.1_OviCan_v1_BIUU \37174 \\ 194 \white-tailed deer \Cetartiodactyla \Odocoileus virginianus \DNA zoo Odocoileus virginianus \9874 \\ 195 \sheep \Cetartiodactyla \Ovis aries \HLoviAri5 GCA_011170295.1 \9940 \\ 196 \Pere David's deer \Cetartiodactyla \Elaphurus davidianus \HLelaDav1 GCA_002443075.1_Milu1.0 \43332 \\ 197 \argali \Cetartiodactyla \Ovis ammon \HLoviAmm1 GCA_003121645.1 \30527 \\ 198 \North Atlantic right whale \Artiodactyla \Eubalaena glacialis \DNA zoo Eubalaena glacialis \27606 \\ 199 \North Pacific right whale \Artiodactyla \Eubalaena japonica \HLeubJap1 GCA_004363455.1_EubJap_v1_BIUU \302098 \\ 200 \minke whale \Artiodactyla \Balaenoptera acutorostrata scammoni \Oct. 2013 (BalAcu1.0/balAcu1) \310752 \\ 201 \humpback whale \Artiodactyla \Megaptera novaeangliae \HLmegNov1 GCA_004329385.1 \9773 \\ 202 \Fin whale \Artiodactyla \Balaenoptera physalus \HLbalPhy1 GCA_008795845.1 \9770 \\ 203 \bowhead whale \Artiodactyla \Balaena mysticetus \HLbalMys1/http://alfred.liv.ac.uk/downloads/bowhead_whale/bowhead_whale_scaffolds.zip/none \27602 \\ 204 \Blue whale \Artiodactyla \Balaenoptera musculus \HLbalMus1 GCA_009873245.1 \9771 \\ 205 \pygmy Bryde's whale \Artiodactyla \Balaenoptera edeni \DNA zoo Balaenoptera edeni \9769 \\ 206 \Sowerby's beaked whale \Artiodactyla \Mesoplodon bidens \HLmesBid1 GCA_004027085.1_MesBid_v1_BIUU \48745 \\ 207 \Indus River dolphin \Artiodactyla \Platanista minor \HLplaMin1 GCA_004363435.1_PlaMin_v1_BIUU \48752 \\ 208 \Cuvier's beaked whale \Artiodactyla \Ziphius cavirostris \HLzipCav1 GCA_004364475.1_ZipCav_v1_BIUU \9760 \\ 209 \boutu \Artiodactyla \Inia geoffrensis \HLlniGeo1 GCA_004363515.1_IniGeo_v1_BIUU \9725 \\ 210 \narwhal \Artiodactyla \Monodon monoceros \HLmonMon1 GCA_005190385.2 \40151 \\ 211 \Yangtze finless porpoise \Artiodactyla \Neophocaena asiaeorientalis asiaeorientalis \HLneoAsi1 GCA_003031525.1_Neophocaena_asiaeorientalis_V1 \1706337 \\ 212 \pygmy sperm whale \Artiodactyla \Kogia breviceps \HLkogBre1 GCA_004363705.1_KogBre_v1_BIUU \27615 \\ 213 \vaquita \Artiodactyla \Phocoena sinus \HLphoSin1 GCA_008692025.1 \42100 \\ 214 \franciscana \Artiodactyla \Pontoporia blainvillei \HLponBla1 GCA_011754075.1 \48723 \\ 215 \Lama pacos huacaya \Artiodactyla \Vicugna pacos huacaya \HLvicPacHua3 GCA_000767525.1_Vi_pacos_V1.0 \273913 \\ 216 \llama \Artiodactyla \Lama glama \DNA zoo Lama glama \9844 \\ 217 \melon-headed whale \Artiodactyla \Peponocephala electra \DNA zoo Peponocephala electra \103596 \\ 218 \long-finned pilot whale \Artiodactyla \Globicephala melas \HLgloMel1 GCA_006547405.1 \9731 \\ 219 \Pacific white-sided dolphin \Artiodactyla \Lagenorhynchus obliquidens \HLlagObl1 GCA_003676395.1 \90247 \\ 220 \Vicugna mensalis \Artiodactyla \Vicugna vicugna mensalis \HLvicVicMen1 GCA_013265495.1 \273917 \\ 221 \guanaco \Artiodactyla \Lama guanicoe cacsilensis \HLlamGuaCac1 GCA_013239625.1 \273908 \\ 222 \llama \Artiodactyla \Lama glama chaku \HLlamGlaCha1 GCA_013239585.1 \273914 \\ 223 \Chacoan peccary \Artiodactyla \Catagonus wagneri \HLcatWag1 GCA_004024745.2_CatWag_v2_BIUU_UCD \51154 \\ 224 \giraffe \Artiodactyla \Giraffa camelopardalis \HLgirCam1 GCA_006408565.1 \9894 \\ 225 \giraffe \Artiodactyla \Giraffa camelopardalis \DNA zoo Giraffa camelopardalis \9894 \\ 226 \African buffalo \Artiodactyla \Syncerus caffer \HLsynCaf1 GCA_902500845.1 \9970 \\ 227 \Bos bison bison \Artiodactyla \Bison bison bison \Oct. 2014 (Bison_UMD1.0/bisBis1) \43346 \\ 228 \Chinese forest musk deer \Artiodactyla \Moschus berezovskii \HLmosBer1 GCA_006459085.1 \68408 \\ 229 \Siberian musk deer \Artiodactyla \Moschus moschiferus \HLmosMos1 GCA_004024705.2 \68415 \\ 230 \alpine musk deer \Artiodactyla \Moschus chrysogaster \HLmosChr1 GCA_006461725.1 \68412 \\ 231 \Yarkand deer \Artiodactyla \Cervus hanglu yarkandensis \HLcerHanYar1 GCA_010411085.1 \84702 \\ 232 \gaur \Artiodactyla \Bos gaurus \HLbosGau1 GCA_014182915.1 \9904 \\ 233 \gayal \Artiodactyla \Bos frontalis \HLbosFro1 GCA_007844835.1_NRC_Mithun_1 \30520 \\ 234 \white-lipped deer \Artiodactyla \Przewalskium albirostris \HLprzAlb1 GCA_006408465.1 \1088058 \\ 235 \roan antelope \Artiodactyla \Hippotragus equinus \HLhipEqu1 GCA_016433095.1 \37186 \\ 236 \Harvey's duiker \Artiodactyla \Cephalophus harveyi \HLcepHar1 GCA_006410635.1 \129224 \\ 237 \sable antelope \Artiodactyla \Hippotragus niger niger \HLhipNig1 GCA_006942125.1 \82127 \\ 238 \domestic yak \Artiodactyla \Bos grunniens \HLbosGru1 GCA_005887515.2 \30521 \\ 239 \scimitar-horned oryx \Artiodactyla \Oryx dammah \DNA zoo Oryx dammah \59534 \\ 240 \bush duiker \Artiodactyla \Sylvicapra grimmia \HLsylGri1 GCA_006408735.1 \119562 \\ 241 \Maxwell's duiker \Artiodactyla \Philantomba maxwellii \HLphiMax1 GCA_006410695.1 \907741 \\ 242 \gemsbok \Artiodactyla \Oryx gazella \HLoryGaz1 GCA_003945745.1 \9958 \\ 243 \pronghorn \Artiodactyla \Antilocapra americana \HLantAme1 GCA_007570785.1 \9891 \\ 244 \Reeves' muntjac \Artiodactyla \Muntiacus reevesi \HLmunRee1 GCA_008787405.1 \9886 \\ 245 \black muntjac \Artiodactyla \Muntiacus crinifrons \HLmunCri1 GCA_006408485.1 \71854 \\ 246 \Central European red deer \Artiodactyla \Cervus elaphus hippelaphus \HLcerEla1 GCA_002197005.1 \46360 \\ 247 \lesser kudu \Artiodactyla \Tragelaphus imberbis \HLtraImb1 GCA_006410775.1 \9947 \\ 248 \brindled gnu \Artiodactyla \Connochaetes taurinus \DNA zoo Connochaetes taurinus \9927 \\ 249 \bushbuck \Artiodactyla \Tragelaphus scriptus \HLtraScr1 GCA_006410495.1 \66440 \\ 250 \waterbuck \Artiodactyla \Kobus ellipsiprymnus \HLkobEll1 GCA_006410655.1 \9962 \\ 251 \muntjak \Artiodactyla \Muntiacus muntjak \HLmunMun1 GCA_008782695.1 \9888 \\ 252 \topi \Artiodactyla \Damaliscus lunatus \HLdamLun1 GCA_006408505.1 \9929 \\ 253 \bighorn sheep \Artiodactyla \Ovis canadensis canadensis \HLoviCan1 GCA_001039535.1 \112262 \\ 254 \lechwe \Artiodactyla \Kobus leche leche \HLkobLecLec1 GCA_014926565.1 \91880 \\ 255 \Eastern roe deer \Artiodactyla \Capreolus pygargus \HLcapPyg1 GCA_012922965.1 \48560 \\ 256 \Eurasian elk \Artiodactyla \Alces alces \HLalcAlc1 GCA_007570765.1 \9852 \\ 257 \Cobus hunteri \Artiodactyla \Beatragus hunteri \HLbeaHun1 GCA_004027495.1_BeaHun_v1_BIUU \59527 \\ 258 \impala \Artiodactyla \Aepyceros melampus \HLaepMel1 GCA_006408695.1 \9897 \\ 259 \mule deer \Artiodactyla \Odocoileus hemionus hemionus \HLodoHem1 GCA_004115125.1 \9877 \\ 260 \Bohar reedbuck \Artiodactyla \Redunca redunca \HLredRed1 GCA_006410935.1 \59556 \\ 261 \Siberian ibex \Artiodactyla \Capra sibirica \HLcapSib1 GCA_003182615.2 \72544 \\ 262 \porcupine caribou \Artiodactyla \Rangifer tarandus granti \HLranTarGra2 GCA_014898785.1 \191431 \\ 263 \reindeer \Artiodactyla \Rangifer tarandus \HLranTar1 GCA_004026565.1_RanTarSib_v1_BIUU \9870 \\ 264 \klipspringer \Artiodactyla \Oreotragus oreotragus \HLoreOre1 GCA_006410675.1 \66444 \\ 265 \Chinese water deer \Artiodactyla \Hydropotes inermis \HLhydIne1 GCA_006459105.1 \9883 \\ 266 \snow sheep \Artiodactyla \Ovis nivicola lydekkeri \HLoviNivLyd1 GCA_903231385.1 \1867112 \\ 267 \suni \Artiodactyla \Neotragus moschatus \HLneoMos1 GCA_006410615.1 \66442 \\ 268 \white-tailed deer \Artiodactyla \Odocoileus virginianus texanus \HLodoVir1 GCA_002102435.1_Ovir.te_1.0 \9880 \\ 269 \Nilgiri tahr \Artiodactyla \Hemitragus hylocrius \HLhemHyl1 GCA_004026825.1_HemHyl_v1_BIUU \330464 \\ 270 \Asiatic mouflon \Artiodactyla \Ovis orientalis \HLoviOri1 GCA_014523465.1 \469796 \\ 271 \royal antelope \Artiodactyla \Neotragus pygmaeus \HLneoPyg1 GCA_006410875.1 \1027985 \\ 272 \Grant's gazelle \Artiodactyla \Nanger granti \HLnanGra1 GCA_006408635.1 \27591 \\ 273 \Przewalski's gazelle \Artiodactyla \Procapra przewalskii \HLproPrz1 GCA_006410515.1 \157668 \\ 274 \steenbok \Artiodactyla \Raphicerus campestris \HLrapCam1 GCA_006410735.1 \59544 \\ 275 \Thomson's gazelle \Artiodactyla \Eudorcas thomsonii \HLeudTho1 GCA_006408755.1 \69308 \\ 276 \springbok \Artiodactyla \Antidorcas marsupialis \HLantMar1 GCA_006408585.1 \59523 \\ 277 \gerenuk \Artiodactyla \Litocranius walleri \HLlitWal1 GCA_006410535.1 \69311 \\ 278 \Kirk's dik-dik \Artiodactyla \Madoqua kirkii \HLmadKir1 GCA_006408675.1 \66434 \\ 279 \Hog deer \Artiodactyla \Axis porcinus \HLaxiPor1 GCA_003798545.1 \57737 \\ 280 \Java mouse-deer \Artiodactyla \Tragulus javanicus \HLtraJav1 GCA_004024965.2 \9849 \\ 281 \lesser mouse-deer \Artiodactyla \Tragulus kanchil \HLtraKan1 GCA_006408655.1 \1088131 \\ 282 \mountain goat \Artiodactyla \Oreamnos americanus \HLoreAme1 GCA_009758055.1 \34873 \\ 283 \saiga antelope \Artiodactyla \Saiga tatarica \HLsaiTat1 GCA_004024985.1_SaiTat_v1_BIUU \34875 \\ 284 \Alpine ibex \Artiodactyla \Capra ibex \HLcapIbe1 GCA_006410555.1 \72542 \\ 285 \Hoffmann's two-fingered sloth \Xenarthra \Choloepus hoffmanni \DNA zoo Choloepus hoffmanni \9358 \\ 286 \southern two-toed sloth \Xenarthra \Choloepus didactylus \HLchoDid2 GCF_015220235.1_mChoDid1.pri \27675 \\ 287 \southern two-toed sloth \Xenarthra \Choloepus didactylus \HLchoDid1 GCA_004027855.1_ChoDid_v1_BIUU \27675 \\ 288 \nine-banded armadillo \Xenarthra \Dasypus novemcinctus \Dec. 2011 (Baylor/dasNov3) \9361 \\ 289 \giant anteater \Xenarthra \Myrmecophaga tridactyla \HLmyrTri1 GCA_004026745.1_MyrTri_v1_BIUU \71006 \\ 290 \southern tamandua \Xenarthra \Tamandua tetradactyla \HLtamTet1 GCA_004025105.1_TamTet_v1_BIUU \48850 \\ 291 \Southern three-banded armadillo \Xenarthra \Tolypeutes matacus \HLtolMat1 GCA_004025125.1_TolMat_v1_BIUU \183749 \\ 292 \Chinese rufous horseshoe bat \Chiroptera \Rhinolophus sinicus \HLrhiSin1 GCA_001888835.1_ASM188883v1 \89399 \\ 293 \great roundleaf bat \Chiroptera \Hipposideros armiger \HLhipArm1 GCA_001890085.1_ASM189008v1 \186990 \\ 294 \black flying fox \Chiroptera \Pteropus alecto \Aug 2012 (ASM32557v1/pteAle1) \9402 \\ 295 \greater horseshoe bat \Chiroptera \Rhinolophus ferrumequinum \HLrhiFer5/Bat1K published/none \59479 \\ 296 \Bonin flying fox \Chiroptera \Pteropus pselaphon \HLptePse1 GCA_014363405.1 \1496133 \\ 297 \Brazilian free-tailed bat \Chiroptera \Tadarida brasiliensis \HLtadBra1 GCA_004025005.1_TadBra_v1_BIUU \9438 \\ 298 \large flying fox \Chiroptera \Pteropus vampyrus \HLpteVam2 GCA_000151845.2 \132908 \\ 299 \Malagasy flying fox \Chiroptera \Pteropus rufus \DNA zoo Pteropus rufus \196297 \\ 300 \Indian flying fox \Chiroptera \Pteropus giganteus \HLpteGig1 GCA_902729225.1 \143291 \\ 301 \Malagasy straw-colored fruit bat \Chiroptera \Eidolon dupreanum \DNA zoo Eidolon dupreanum \58063 \\ 302 \straw-colored fruit bat \Chiroptera \Eidolon helvum \HLeidHel2/DNAZoo/none \77214 \\ 303 \Cantor's roundleaf bat \Chiroptera \Hipposideros galeritus \HLhipGal1 GCA_004027415.1_HipGal_v1_BIUU \58069 \\ 304 \lesser short-nosed fruit bat \Chiroptera \Cynopterus brachyotis \HLcynBra1 GCA_009793145.1 \58060 \\ 305 \lesser dawn bat \Chiroptera \Eonycteris spelaea \HLeonSpe1 GCA_003508835.1 \58065 \\ 306 \Leschenault's rousette \Chiroptera \Rousettus leschenaultii \HLrouLes1 GCA_015472975.1 \9408 \\ 307 \Egyptian rousette \Chiroptera \Rousettus aegyptiacus \HLrouAeg4/Bat1K published/none \9407 \\ 308 \Madagascan rousette \Chiroptera \Rousettus madagascariensis \DNA zoo Rousettus madagascariensis \77223 \\ 309 \Indian false vampire \Chiroptera \Megaderma lyra \HLmegLyr2 GCA_004026885.1_MegLyr_v1_BIUU \9413 \\ 310 \Pallas's mastiff bat \Chiroptera \Molossus molossus \HLmolMol2/Bat1K published/none \27622 \\ 311 \long-tongued fruit bat \Chiroptera \Macroglossus sobrinus \HLmacSob1 GCA_004027375.1_MacSob_v1_BIUU \326083 \\ 312 \Schreibers' long-fingered bat \Chiroptera \Miniopterus schreibersii \HLminSch1 GCA_004026525.1_MinSch_v1_BIUU \9433 \\ 313 \Miniopterus schreibersii natalensis \Chiroptera \Miniopterus natalensis \HLminNat1 GCA_001595765.1 \291302 \\ 314 \hog-nosed bat \Chiroptera \Craseonycteris thonglongyai \HLcraTho1 GCA_004027555.1_CraTho_v1_BIUU \208972 \\ 315 \Antillean ghost-faced bat \Chiroptera \Mormoops blainvillei \HLmorBla1 GCA_004026545.1_MorMeg_v1_BIUU \118852 \\ 316 \Parnell's mustached bat \Chiroptera \Pteronotus parnellii \Sep. 2013 (ASM46540v1/ptePar1) \59476 \\ 317 \big brown bat \Chiroptera \Eptesicus fuscus \Jul 2012 (EptFus1.0/eptFus1) \29078 \\ 318 \greater mouse-eared bat \Chiroptera \Myotis myotis \HLmyoMyo6/Bat1K published/none \51298 \\ 319 \Brandt's bat \Chiroptera \Myotis brandtii \28 Jun 2013 (ASM41265v1/myoBra1) \109478 \\ 320 \common vampire bat \Chiroptera \Desmodus rotundus \HLdesRot2 \9430 \\ 321 \California big-eared bat \Chiroptera \Macrotus californicus \HLmacCal1 GCA_007922815.1 \9419 \\ 322 \Northern long-eared myotis \Chiroptera \Myotis septentrionalis \DNA zoo Myotis septentrionalis \258941 \\ 323 \little brown bat \Chiroptera \Myotis lucifugus \DNA zoo Myotis lucifugus \59463 \\ 324 \little brown bat \Chiroptera \Myotis lucifugus \Jul. 2010 (Broad Institute Myoluc2.0/myoLuc2) \59463 \\ 325 \Lesser long-nosed bat \Chiroptera \Leptonycteris yerbabuenae \HLlepYer1/GIGADB/none \700936 \\ 326 \Vespertilio Davidii \Chiroptera \Myotis davidii \Aug 2012 (ASM32734v1/myoDav1) \225400 \\ 327 \Schizostoma hirsutum \Chiroptera \Micronycteris hirsuta \HLmicHir1 GCA_004026765.1_MicHir_v1_BIUU \148065 \\ 328 \tailed tailless bat \Chiroptera \Anoura caudifer \HLanoCau1 GCA_004027475.1_AnoCau_v1_BIUU \27642 \\ 329 \Murina feae \Chiroptera \Murina aurata feae \HLmurAurFea1 GCA_004026665.1_MurFea_v1_BIUU \1453894 \\ 330 \greater bulldog bat \Chiroptera \Noctilio leporinus \HLnocLep1 GCA_004026585.1_NocLep_v1_BIUU \94963 \\ 331 \Seba's short-tailed bat \Chiroptera \Carollia perspicillata \HLcarPer3 GCA_004027735.1_CarPer_v1_BIUU \40233 \\ 332 \pale spear-nosed bat \Chiroptera \Phyllostomus discolor \HLphyDis3/Bat1K published/none \89673 \\ 333 \stripe-headed round-eared bat \Chiroptera \Tonatia saurophila \HLtonSau1 GCA_004024845.1_TonSau_v1_BIUU \171122 \\ 334 \Jamaican fruit-eating bat \Chiroptera \Artibeus jamaicensis \HLartJam1 GCA_004027435.1_ArtJam_v1_BIUU \9417 \\ 335 \Jamaican fruit-eating bat \Chiroptera \Artibeus jamaicensis \HLartJam2 GCA_014825515.1 \9417 \\ 336 \Honduran yellow-shouldered bat \Chiroptera \Sturnira hondurensis \HLstuHon1 GCA_014824575.1 \192404 \\ 337 \hoary bat \Chiroptera \Aeorestes cinereus \HLaeoCin1 GCA_011751065.1 \257879 \\ 338 \pallid bat \Chiroptera \Antrozous pallidus \HLantPal1 GCA_007922775.1 \9440 \\ 339 \evening bat \Chiroptera \Nycticeius humeralis \HLnycHum2 GCA_007922795.1 \27670 \\ 340 \red bat \Chiroptera \Lasiurus borealis \HLlasBor1 GCA_004026805.1_LasBor_v1_BIUU \258930 \\ 341 \Kuhl's pipistrelle \Chiroptera \Pipistrellus kuhlii \HLpipKuh2/Bat1K published/none \59472 \\ 342 \common pipistrelle \Chiroptera \Pipistrellus pipistrellus \HLpipPip1 GCA_004026625.1_PipPip_v1_BIUU \59474 \\ 343 \common pipistrelle \Chiroptera \Pipistrellus pipistrellus \HLpipPip2 GCA_903992545.1 \59474 \\ 344 \gray squirrel \Glires \Sciurus carolinensis \HLsciCar1 GCA_902686445.1 \30640 \\ 345 \Eurasian red squirrel \Glires \Sciurus vulgaris \HLsciVul1 GCA_902686455.1_mSciVul1.1 \55149 \\ 346 \South African ground squirrel \Glires \Xerus inauris \HLxerIna1 GCA_004024805.1_XerIna_v1_BIUU \234690 \\ 347 \mountain beaver \Glires \Aplodontia rufa \HLaplRuf1 GCA_004027875.1_AplRuf_v1_BIUU \51342 \\ 348 \yellow-bellied marmot \Glires \Marmota flaviventris \HLmarFla1 GCA_003676075.2 \93162 \\ 349 \Alpine marmot \Glires \Marmota marmota marmota \HLmarMar1 GCF_001458135.1_marMar2.1 \9994 \\ 350 \Vancouver Island marmot \Glires \Marmota vancouverensis \HLmarVan1 GCA_005458795.1 \93167 \\ 351 \Himalayan marmot \Glires \Marmota himalayana \HLmarHim1 GCA_005280165.1 \93163 \\ 352 \Daurian ground squirrel \Glires \Spermophilus dauricus \HLspeDau1 GCA_002406435.1_ASM240643v1 \99837 \\ 353 \woodchuck \Glires \Marmota monax \HLmarMon1 GCA_901343595.1_MONAX5 \9995 \\ 354 \woodchuck \Glires \Marmota monax \HLmarMon2 GCA_014533835.1 \9995 \\ 355 \Arctic ground squirrel \Glires \Urocitellus parryii \HLuroPar1 GCA_003426925.1 \9999 \\ 356 \Gunnison's prairie dog \Glires \Cynomys gunnisoni \HLcynGun1 GCA_011316645.1 \45479 \\ 357 \thirteen-lined ground squirrel \Glires \Ictidomys tridecemlineatus \Nov. 2011 (Broad/speTri2) \43179 \\ 358 \Fat dormouse \Glires \Glis glis \HLgliGli1 GCA_004027185.1_GliGli_v1_BIUU \41261 \\ 359 \springhare \Glires \Pedetes capensis \HLpedCap1 GCA_007922755.1 \10023 \\ 360 \American beaver \Glires \Castor canadensis \DNA zoo Castor canadensis \51338 \\ 361 \woodland dormouse \Glires \Graphiurus murinus \HLgraMur1 GCA_004027655.1_GraMur_v1_BIUU \51346 \\ 362 \Mountain hare \Glires \Lepus timidus \HLlepTim1 GCA_009760805.1 \62621 \\ 363 \snowshoe hare \Glires \Lepus americanus \HLlepAme1 GCA_004026855.1_LepAme_v1_BIUU \48086 \\ 364 \European rabbit \Glires \Oryctolagus cuniculus cuniculus \HLoryCunCun4 GCA_013371645.1 \568996 \\ 365 \rabbit \Glires \Oryctolagus cuniculus \Apr. 2009 (Broad/oryCun2) \9986 \\ 366 \rabbit \Glires \Oryctolagus cuniculus \HLoryCun3 GCA_009806435.1 \9986 \\ 367 \brush rabbit \Glires \Sylvilagus bachmani \DNA zoo Sylvilagus bachmani \365149 \\ 368 \crested porcupine \Glires \Hystrix cristata \HLhysCri1 GCA_004026905.1_HysCri_v1_BIUU \10137 \\ 369 \North American porcupine \Glires \Erethizon dorsatum \HLereDor1 GCA_006547115.1 \34844 \\ 370 \Brazilian porcupine \Glires \Coendou prehensilis \DNA zoo Coendou prehensilis \187985 \\ 371 \hazel dormouse \Glires \Muscardinus avellanarius \HLmusAve1 GCA_004027005.1_MusAve_v1_BIUU \39082 \\ 372 \naked mole-rat \Glires \Heterocephalus glaber \Jan. 2012 (Broad HetGla_female_1.0/hetGla2) \10181 \\ 373 \Damara mole-rat \Glires \Fukomys damarensis \HLfukDam2 GCA_012274545.1 \885580 \\ 374 \Upper Galilee mountains blind mole rat \Glires \Nannospalax galili \Jun 2014 (S.galili_v1.0/nanGal1) \1026970 \\ 375 \long-tailed chinchilla \Glires \Chinchilla lanigera \May 2012 (ChiLan1.0/chiLan1) \34839 \\ 376 \punctate agouti \Glires \Dasyprocta punctata \HLdasPun1 GCA_004363535.1_DasPun_v1_BIUU \34846 \\ 377 \northern gundi \Glires \Ctenodactylus gundi \HLcteGun1 GCA_004027205.1_CteGun_v1_BIUU \10166 \\ 378 \Gobi jerboa \Glires \Allactaga bullata \HLallBul1 GCA_004027895.1_AllBul_v1_BIUU \1041416 \\ 379 \Stephens's kangaroo rat \Glires \Dipodomys stephensi \HLdipSte1 GCA_004024685.1_DipSte_v1_BIUU \323379 \\ 380 \Ord's kangaroo rat \Glires \Dipodomys ordii \Dec. 2014 (Dord_2.0/dipOrd2) \10020 \\ 381 \hoary bamboo rat \Glires \Rhizomys pruinosus \HLrhiPru1 GCA_009823505.1 \53275 \\ 382 \pacarana \Glires \Dinomys branickii \HLdinBra1 GCA_004027595.1_DinBra_v1_BIUU \108858 \\ 383 \lesser Egyptian jerboa \Glires \Jaculus jaculus \May 2012 (JacJac1.0/jacJac1) \51337 \\ 384 \meadow jumping mouse \Glires \Zapus hudsonius \HLzapHud1 GCA_004024765.1_ZapHud_v1_BIUU \160400 \\ 385 \Patagonian cavy \Glires \Dolichotis patagonum \HLdolPat1 GCA_004027295.1_DolPat_v1_BIUU \29091 \\ 386 \Pacific pocket mouse \Glires \Perognathus longimembris pacificus \HLperLonPac1 GCA_004363475.1_PerLonPac_v1_BIUU \214514 \\ 387 \capybara \Glires \Hydrochoerus hydrochaeris \HLhydHyd1 GCA_004027455.1_HydHyd_v1_BIUU \10149 \\ 388 \American pika \Glires \Ochotona princeps \May 2012 (OchPri3.0/ochPri3) \9978 \\ 389 \Brazilian guinea pig \Glires \Cavia aperea \Jan. 2014 (CavAp1.0/cavApe1) \37548 \\ 390 \dassie-rat \Glires \Petromus typicus \HLpetTyp1 GCA_004026965.1_PetTyp_v1_BIUU \10183 \\ 391 \Montane guinea pig \Glires \Cavia tschudii \HLcavTsc1 GCA_004027695.1_CavTsc_v1_BIUU \143287 \\ 392 \domestic guinea pig \Glires \Cavia porcellus \Feb. 2008 (Broad/cavPor3) \10141 \\ 393 \Greater cane rat \Glires \Thryonomys swinderianus \HLthrSwi1 GCA_004025085.1_ThrSwi_v1_BIUU \10169 \\ 394 \degu \Glires \Octodon degus \Apr 2012 (OctDeg1.0/octDeg1) \10160 \\ 395 \Gambian giant pouched rat \Glires \Cricetomys gambianus \HLcriGam1 GCA_004027575.1_CriGam_v1_BIUU \10085 \\ 396 \desert woodrat \Glires \Neotoma lepida \HLneoLep1 GCA_001675575.1 \56216 \\ 397 \social tuco-tuco \Glires \Ctenomys sociabilis \HLcteSoc1 GCA_004027165.1_CteSoc_v1_BIUU \43321 \\ 398 \nutria \Glires \Myocastor coypus \HLmyoCoy1 GCA_004027025.1_MyoCoy_v1_BIUU \10157 \\ 399 \northern rock mouse \Glires \Peromyscus nasutus \DNA zoo Peromyscus nasutus \97212 \\ 400 \Chinese hamster \Glires \Cricetulus griseus \HLcriGri3 GCA_003668045.1 \10029 \\ 401 \Hesperomys crinitus \Glires \Peromyscus crinitus \DNA zoo Peromyscus crinitus \144753 \\ 402 \muskrat \Glires \Ondatra zibethicus \HLondZib1 GCA_004026605.1_OndZib_v1_BIUU \10060 \\ 403 \Peromyscus californicus subsp. insignis \Glires \Peromyscus californicus insignis \HLperCal2 GCA_007827085.2 \564181 \\ 404 \cactus mouse \Glires \Peromyscus eremicus \HLperEre1 GCA_902702925.1 \42410 \\ 405 \southern grasshopper mouse \Glires \Onychomys torridus \HLonyTor1 GCA_903995425.1 \38674 \\ 406 \golden hamster \Glires \Mesocricetus auratus \Mar 2013 (MesAur1.0/mesAur1) \10036 \\ 407 \white-footed mouse \Glires \Peromyscus leucopus \HLperLeu1 GCA_004664715.1 \10041 \\ 408 \Northern mole vole \Glires \Ellobius talpinus \HLellTal1 GCA_001685095.1_ETalpinus_0.1 \329620 \\ 409 \oldfield mouse \Glires \Peromyscus polionotus subgriseus \HLperPol1 GCA_003704135.2 \369710 \\ 410 \prairie deer mouse \Glires \Peromyscus maniculatus bairdii \HLperManBai2 GCA_003704035.1 \230844 \\ 411 \hispid cotton rat \Glires \Sigmodon hispidus \HLsigHis1 GCA_004025045.1_SigHis_v1_BIUU \42415 \\ 412 \Transcaucasian mole vole \Glires \Ellobius lutescens \HLellLut1 GCA_001685075.1_ASM168507v1 \39086 \\ 413 \Bank vole \Glires \Myodes glareolus \HLmyoGla2 GCA_902806735.1 \447135 \\ 414 \Eurasian water vole \Glires \Arvicola amphibius \HLarvAmp1 GCA_903992535.1 \1047088 \\ 415 \fat sand rat \Glires \Psammomys obesus \HLpsaObe1 GCA_002215935.2 \48139 \\ 416 \golden spiny mouse \Glires \Acomys russatus \HLacoRus1 GCA_903995435.1 \60746 \\ 417 \African woodland thicket rat \Glires \Grammomys surdaster \HLgraSur1 GCA_004785775.1 \491861 \\ 418 \African grass rat \Glires \Arvicanthis niloticus \HLarvNil1 GCA_011762505.1_mArvNil1.pat.X \61156 \\ 419 \root vole \Glires \Microtus oeconomus \HLmicOec1 GCA_007455595.1 \64717 \\ 420 \short-tailed field vole \Glires \Microtus agrestis \HLmicAgr2 GCA_902806775.1 \29092 \\ 421 \reed vole \Glires \Microtus fortis \HLmicFor1 GCA_014885135.1 \100897 \\ 422 \Egyptian spiny mouse \Glires \Acomys cahirinus \HLacoCah1 GCA_004027535.1_AcoCah_v1_BIUU \10068 \\ 423 \Common vole \Glires \Microtus arvalis \HLmicArv1 GCA_007455615.1 \47230 \\ 424 \prairie vole \Glires \Microtus ochrogaster \Oct. 2012 (MicOch1.0/micOch1) \79684 \\ 425 \great gerbil \Glires \Rhombomys opimus \HLrhoOpi1 GCA_010120015.1 \186474 \\ 426 \southern multimammate mouse \Glires \Mastomys coucha \HLmasCou1 GCA_008632895.1 \35658 \\ 427 \Mongolian gerbil \Glires \Meriones unguiculatus \HLmerUng1 GCA_002204375.1 \10047 \\ 428 \black rat \Glires \Rattus rattus \HLratRat7 GCA_011064425.1 \10117 \\ 429 \Norway rat \Glires \Rattus norvegicus \HLratNor7 GCA_015227675.1 \10116 \\ 430 \Norway rat \Glires \Rattus norvegicus \Jul. 2014 (RGSC 6.0/rn6) \10116 \\ 431 \shrew mouse \Glires \Mus pahari \HLmusPah1 GCA_900095145.2 \10093 \\ 432 \Ryukyu mouse \Glires \Mus caroli \HLmusCar1 GCA_900094665.2_CAROLI_EIJ_v1.1 \10089 \\ 433 \steppe mouse \Glires \Mus spicilegus \HLmusSpi1 GCA_003336285.1 \10103 \\ 434 \house mouse \Glires \Mus musculus \Jun. 2020 (GRCm39/mm39) \10090 \\ 435 \house mouse \Glires \Mus musculus \Dec. 2011 (GRCm38/mm10) \10090 \\ 436 \western wild mouse \Glires \Mus spretus \HLmusSpr1 GCA_001624865.1_SPRET_EiJ_v1 \10096 \\ 437 \European woodmouse \Glires \Apodemus sylvaticus \HLapoSyl1 GCA_001305905.1 \10129 \\ 438 \dugong \Afrotheria \Dugong dugon \HLdugDug1 GCA_015147995.1 \29137 \\ 439 \Florida manatee \Afrotheria \Trichechus manatus latirostris \Oct. 2011 (Broad v1.0/triMan1) \127582 \\ 440 \Asiatic elephant \Afrotheria \Elephas maximus \DNA zoo Elephas maximus \9783 \\ 441 \African savanna elephant \Afrotheria \Loxodonta africana \HLloxAfr4/ftp://ftp.broadinstitute.org/pub/assemblies/mammals/elephant/loxAfr4//none \9785 \\ 442 \aardvark \Afrotheria \Orycteropus afer afer \May 2012 (OryAfe1.0/oryAfe1) \1230840 \\ 443 \Steller's sea cow \Afrotheria \Hydrodamalis gigas \HLhydGig1 GCA_013391785.1 \63631 \\ 444 \Cape golden mole \Afrotheria \Chrysochloris asiatica \Aug 2012 (ChrAsi1.0/chrAsi1) \185453 \\ 445 \yellow-spotted hyrax \Afrotheria \Heterohyrax brucei \HLhetBru1 GCA_004026845.1_HetBruBak_v1_BIUU \77598 \\ 446 \Cape rock hyrax \Afrotheria \Procavia capensis \HLproCap3 GCA_004026925.2 \9813 \\ 447 \Cape elephant shrew \Afrotheria \Elephantulus edwardii \Aug 2012 (EleEdw1.0/eleEdw1) \28737 \\ 448 \small Madagascar hedgehog \Afrotheria \Echinops telfairi \Nov. 2012 (Broad/echTel2) \9371 \\ 449 \Talazac's shrew tenrec \Afrotheria \Microgale talazaci \HLmicTal1 GCA_004026705.1_MicTal_v1_BIUU \176115 \\ 450 \common wombat \Metatheria \Vombatus ursinus \HLvomUrs1 GCA_900497805.2 \29139 \\ 451 \koala \Metatheria \Phascolarctos cinereus \HLphaCin1 GCA_002099425.1 \38626 \\ 452 \Agile Gracile Mouse Opossum \Metatheria \Gracilinanus agilis \HLgraAgi1 GCA_016433145.1 \191870 \\ 453 \common brushtail \Metatheria \Trichosurus vulpecula \HLtriVul1 GCA_011100635.1_mTriVul1.pri \9337 \\ 454 \North American opossum \Metatheria \Didelphis virginiana \DNA zoo Didelphis virginiana \9267 \\ 455 \ground cuscus \Metatheria \Phalanger gymnotis \DNA zoo Phalanger gymnotis \65615 \\ 456 \gray short-tailed opossum \Metatheria \Monodelphis domestica \Oct. 2006 (Broad/monDom5) \13616 \\ 457 \Leadbeater's possum \Metatheria \Gymnobelideus leadbeateri \HLgymLea1 GCA_011680675.1 \38618 \\ 458 \Tasmanian wolf \Metatheria \Thylacinus cynocephalus \HLthyCyn1 GCA_007646695.1 \9275 \\ 459 \coppery ringtail possum \Metatheria \Pseudochirops cupreus \DNA zoo Pseudochirops cupreus \37702 \\ 460 \eastern gray kangaroo \Metatheria \Macropus giganteus \DNA zoo Macropus giganteus \9317 \\ 461 \golden ringtail possum \Metatheria \Pseudochirops corinnae \DNA zoo Pseudochirops corinnae \65629 \\ 462 \western gray kangaroo \Metatheria \Macropus fuliginosus \DNA zoo Macropus fuliginosus \9316 \\ 463 \tammar wallaby \Metatheria \Macropus eugenii \DNA zoo Macropus eugenii \9315 \\ 464 \red kangaroo \Metatheria \Osphranter rufus \DNA zoo Osphranter rufus \9321 \\ 465 \Western ringtail oppossum \Metatheria \Pseudocheirus occidentalis \DNA zoo Pseudocheirus occidentalis \656515 \\ 466 \tammar wallaby \Metatheria \Macropus eugenii \Sep. 2009 (TWGS Meug_1.1/macEug2) \9315 \\ 467 \yellow-footed antechinus \Metatheria \Antechinus flavipes \HLantFla1 GCA_016432865.1_AdamAnt \38775 \\ 468 \Tasmanian devil \Metatheria \Sarcophilus harrisii \HLsarHar2 GCA_902635505.1 \9305 \\ 469 \platypus \Monotremata \Ornithorhynchus anatinus \HLornAna3 GCA_004115215.1 \9258 \\ 470 \Australian echidna \Monotremata \Tachyglossus aculeatus \HLtacAcu1 GCA_015852505.1 \9261 \
\ Table 1. Genome assemblies included in the 470-way Conservation track.\
Data Access
\\ Downloads for data in this track are available:\
- \
- \ Multiz alignments (bigMaf and MAF format), and phylogenetic trees \
- \ PhyloP conservation (bigWig and WIG format) \
- \ PhastCons conservation (bigWig and WIG format) \
Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ The names of selected species are colored according to their clade,\ alternating between blue and green.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. Missing sequence in any\ assembly is highlighted in the track display by regions of yellow when zoomed\ out and by Ns when displayed at base level. The following conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\
- \
- \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
- \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
- \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
- Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\
\ Codon translation uses the following gene tracks as the basis for translation:\
\ \\
\ Table 2. Gene tracks used for codon translation.\\ Gene Track Species \ RefSeq Genes aardvark, American pika, Amur tiger, Angolan colobus, big brown bat, black flying fox, black snub-nosed monkey, Bolivian squirrel monkey, Brandt's bat, Cape elephant shrew, Cape golden mole, cattle, chimpanzee, Chinese tree shrew, Coquerel's sifaka, degu, dog, domestic cat, domestic guinea pig, drill, European shrew, Florida manatee, golden hamster, gray mouse lemur, green monkey, Hawaiian monk seal, horse, house mouse, house mouse, human, killer whale, lesser Egyptian jerboa, little brown bat, long-tailed chinchilla, Ma's night monkey, minke whale, naked mole-rat, nine-banded armadillo, Northern sea otter, Norway rat, Ord's kangaroo rat, Pacific walrus, Panamanian white-faced capuchin, Philippine tarsier, pig, pig-tailed macaque, polar bear, prairie vole, Przewalski's horse, pygmy chimpanzee, rabbit, Rhesus monkey, small Madagascar hedgehog, small-eared galago, sooty mangabey, southern white rhinoceros, star-nosed mole, Sumatran orangutan, thirteen-lined ground squirrel, Upper Galilee mountains blind mole rat, Vespertilio Davidii, Weddell seal, western European hedgehog, western lowland gorilla, Yangtze River dolphin \ Ensembl Genes Bos bison bison, Brazilian guinea pig, dog, gray short-tailed opossum, northern tree shrew \ Xeno RefGene alpaca, black lemur, Chinese pangolin, common bottlenose dolphin, proboscis monkey, Sclater's lemur, Southern sea otter, tammar wallaby \ no annotation African buffalo, African grass rat, African hunting dog, African hunting dog, African savanna elephant, African woodland thicket rat, Agile Gracile Mouse Opossum, Allen's swamp monkey, Alpine ibex, Alpine marmot, alpine musk deer, American beaver, American black bear, American black bear, American mink, Amur leopard cat, antarctic fur seal, Antarctic minke whale, Antillean ghost-faced bat, aoudad, Arabian camel, Arctic fox, Arctic ground squirrel, argali, Asian black bear, Asian palm civet, Asiatic elephant, Asiatic mouflon, Asiatic tapir, Asiatic tapir, ass, Australian echidna, aye-aye, babakoto, Bactrian camel, banded mongoose, Bank vole, bearded seal, beluga whale, bighorn sheep, bighorn sheep, black muntjac, black rat, black rhinoceros, black-footed cat, black-handed spider monkey, Blue whale, Bohar reedbuck, Bolivian squirrel monkey, Bolivian titi, Bonin flying fox, boutu, bowhead whale, Brazilian free-tailed bat, Brazilian porcupine, Brazilian tapir, brindled gnu, brown lemur, brush rabbit, bush duiker, bushbuck, Cacomistle, cactus mouse, California big-eared bat, California sea lion, Canada lynx, Cantor's roundleaf bat, Cape rock hyrax, capybara, Central European red deer, Chacoan peccary, cheetah, Chinese forest musk deer, Chinese hamster, Chinese pangolin, Chinese rufous horseshoe bat, Chinese water deer, chiru, Clouded leopard, Cobus hunteri, common bottlenose dolphin, common bottlenose dolphin, common brushtail, common pipistrelle, common pipistrelle, common vampire bat, Common vole, common wombat, coppery ringtail possum, Coquerel's mouse lemur, crab-eating macaque, crested porcupine, Cuvier's beaked whale, Damara mole-rat, dassie-rat, Daurian ground squirrel, De Brazza's monkey, desert woodrat, dingo, domestic ferret, domestic yak, donkey, dugong, dwarf mongoose, eastern gray kangaroo, eastern mole, Eastern roe deer, Egyptian rousette, Egyptian spiny mouse, Equus burchelli boehmi, ermine, Eurasian elk, Eurasian red squirrel, Eurasian river otter, Eurasian water vole, European polecat, European rabbit, European woodmouse, evening bat, Fat dormouse, fat sand rat, Fin whale, fossa, franciscana, Francois's langur, Gambian giant pouched rat, gaur, gayal, gelada, gemsbok, gerenuk, giant anteater, giant otter, giant otter, giant panda, giraffe, giraffe, goat, Gobi jerboa, golden ringtail possum, golden snub-nosed monkey, golden spiny mouse, gracile shrew mole, Grant's gazelle, gray seal, gray squirrel, great gerbil, great roundleaf bat, greater bamboo lemur, greater bulldog bat, Greater cane rat, greater horseshoe bat, greater Indian rhinoceros, greater kudu, greater mouse-eared bat, grey whale, grizzly bear, ground cuscus, guanaco, Gunnison's prairie dog, Hanuman langur, harbor porpoise, harbor porpoise, harbor seal, Harvey's duiker, hazel dormouse, Hesperomys crinitus, Himalayan marmot, hippopotamus, hippopotamus, Hispaniolan solenodon, hispid cotton rat, hoary bamboo rat, hoary bat, Hoffmann's two-fingered sloth, Hog deer, hog-nosed bat, Honduran yellow-shouldered bat, humpback whale, Iberian mole, impala, Indian false vampire, Indian flying fox, Indo-pacific bottlenose dolphin, Indo-pacific bottlenose dolphin, Indo-pacific humpbacked dolphin, Indus River dolphin, jaguar, jaguar, jaguarundi, Jamaican fruit-eating bat, Jamaican fruit-eating bat, Japanese macaque, Java mouse-deer, kinkajou, Kirk's dik-dik, klipspringer, koala, Kuhl's pipistrelle, Lama pacos huacaya, large flying fox, Leadbeater's possum, lechwe, leopard, Leschenault's rousette, lesser dawn bat, Lesser dwarf lemur, lesser kudu, Lesser long-nosed bat, lesser mouse-deer, lesser panda, lesser short-nosed fruit bat, lion, little brown bat, llama, llama, long-finned pilot whale, long-tongued fruit bat, Madagascan rousette, Malagasy flying fox, Malagasy straw-colored fruit bat, Malayan pangolin, Malayan pangolin, mandrill, mantled howler monkey, Masai giraffe, Maxwell's duiker, meadow jumping mouse, meerkat, meerkat, melon-headed whale, Miniopterus schreibersii natalensis, Mona monkey, Mongolian gerbil, mongoose lemur, Montane guinea pig, mountain beaver, mountain goat, Mountain hare, mouse lemur, mule deer, muntjak, Murina feae, muskrat, narwhal, Nilgiri tahr, North American badger, North American opossum, North American porcupine, North Atlantic right whale, North Pacific right whale, Northern American river otter, Northern elephant seal, northern fur seal, Northern giant mouse lemur, northern gundi, Northern long-eared myotis, Northern mole vole, northern rock mouse, Northern rufous mouse lemur, northern white rhinoceros, northern white-cheeked gibbon, Norway rat, nutria, okapi, oldfield mouse, olive baboon, pacarana, Pacific pocket mouse, Pacific white-sided dolphin, pale spear-nosed bat, Pallas's mastiff bat, pallid bat, Parnell's mustached bat, Patagonian cavy, Pere David's deer, Peromyscus californicus subsp. insignis, platypus, porcupine caribou, prairie deer mouse, pronghorn, Przewalski's gazelle, puma, punctate agouti, pygmy Bryde's whale, pygmy marmoset, pygmy sperm whale, rabbit, raccoon, ratel, red bat, red fox, red guenon, red kangaroo, Red shanked douc langur, reed vole, Reeves' muntjac, reindeer, Ring-tailed lemur, roan antelope, root vole, royal antelope, Ryukyu mouse, sable, sable antelope, saiga antelope, Schizostoma hirsutum, Schreibers' long-fingered bat, scimitar-horned oryx, Sclater's lemur, Seba's short-tailed bat, sheep, short-tailed field vole, shrew mouse, Siberian ibex, Siberian musk deer, silvery gibbon, slow loris, snow sheep, snowshoe hare, social tuco-tuco, South African ground squirrel, Southern elephant seal, southern grasshopper mouse, southern multimammate mouse, southern tamandua, Southern three-banded armadillo, southern two-toed sloth, southern two-toed sloth, Sowerby's beaked whale, Spanish lynx, sperm whale, sperm whale, spotted hyena, springbok, springhare, steenbok, Steller sea lion, Steller's sea cow, Stephens's kangaroo rat, steppe mouse, straw-colored fruit bat, stripe-headed round-eared bat, striped hyena, Sumatran rhinoceros, Sunda flying lemur, suni, tailed tailless bat, Talazac's shrew tenrec, tamarin, tammar wallaby, Tasmanian devil, Tasmanian wolf, Thomson's gazelle, topi, Transcaucasian mole vole, Tree pangolin, Tree pangolin, tufted capuchin, Ugandan red Colobus, Vancouver Island marmot, vaquita, Vicugna mensalis, walrus, water buffalo, waterbuck, western gray kangaroo, Western ringtail oppossum, western spotted skunk, western wild mouse, white-faced saki, white-footed mouse, white-fronted capuchin, white-lipped deer, White-nosed coati, white-tailed deer, white-tailed deer, white-tailed deer, white-tufted-ear marmoset, Wild Bactrian camel, wild goat, wild yak, wolverine, woodchuck, woodchuck, woodland dormouse, Yangtze finless porpoise, Yarkand deer, yellow-bellied marmot, yellow-footed antechinus, yellow-spotted hyrax, zebu cattle,\
Methods
\\ Pairwise alignments with the human genome were generated for\ each species using lastz from repeat-masked genomic sequence.\ Pairwise alignments were then linked into chains using a dynamic programming\ algorithm that finds maximally scoring chains of gapless subsections\ of the alignments organized in a kd-tree.\ The scoring matrix and parameters for pairwise alignment and chaining\ were tuned for each species based on phylogenetic distance from the reference.\ High-scoring chains were then placed along the genome, with\ gaps filled by lower-scoring chains, to produce an alignment net.\
\ \Phylogenetic Tree Model
\\ The phyloP are phylogenetic methods that rely\ on a tree model containing the tree topology, branch lengths representing\ evolutionary distance at neutrally evolving sites, the background distribution\ of nucleotides, and a substitution rate matrix.\ The\ all-species tree model for this track was\ generated using the phyloFit program from the PHAST package\ (REV model, EM algorithm, medium precision) using multiple alignments of\ 4-fold degenerate sites extracted from the 470-way alignment\ (msa_view). The 4d sites were derived from the RefSeq (Reviewed+Coding) gene\ set, filtered to select single-coverage long transcripts.\
\\ This same tree model was used in the phyloP calculations; however, the\ background frequencies were modified to maintain reversibility.\ The resulting tree model:\ all species.\
\PhyloP Conservation
\\ The phyloP program supports several different methods for computing\ p-values of conservation or acceleration, for individual nucleotides or\ larger elements (\ http://compgen.cshl.edu/phast/). Here it was used\ to produce separate scores at each base (--wig-scores option), considering\ all branches of the phylogeny rather than a particular subtree or lineage\ (i.e., the --subtree option was not used). The scores were computed by\ performing a likelihood ratio test at each alignment column (--method LRT),\ and scores for both conservation and acceleration were produced (--mode\ CONACC).\
\ \Credits
\This track was created using the following programs:\
- \
- Alignment tools: lastz (formerly blastz) and multiz by Minmei Hou, Scott Schwartz and Webb\ Miller of the Penn State Bioinformatics Group\
- Chaining and Netting: axtChain, chainNet by Jim Kent at UCSC\
- Conservation scoring: phastCons, phyloP, phyloFit, tree_doctor, msa_view and\ other programs in PHAST by\ Adam Siepel at Cold Spring Harbor Laboratory (original development\ done at the Haussler lab at UCSC).\
- MAF Annotation tools: mafAddIRows by Brian Raney, UCSC; mafAddQRows\ by Richard Burhans, Penn State; genePredToMafFrames by Mark Diekhans, UCSC\
- Tree image generator: phyloPng by Galt Barber, UCSC\
- Conservation track display: Kate Rosenbloom, Hiram Clawson (wiggle\ display), and Brian Raney (gap annotation and codon framing) at UCSC\
References
\\ Harris RS.\ Improved pairwise alignment of genomic DNA.\ Ph.D. Thesis. Pennsylvania State University, USA. 2007.\
\ \PhyloP:
\\ Cooper GM, Stone EA, Asimenos G, NISC Comparative Sequencing Program., Green ED, Batzoglou S, Sidow\ A.\ \ Distribution and intensity of constraint in mammalian genomic sequence.\ Genome Res. 2005 Jul;15(7):901-13.\ PMID: 15965027;\ PMC: PMC1172034;\ DOI: 10.1101/gr.3577405\
\ \\ Pollard KS, Hubisz MJ, Rosenbloom KR, Siepel A.\ \ Detection of nonneutral substitution rates on mammalian phylogenies.\ Genome Res. 2010 Jan;20(1):110-21.\ PMID: 19858363;\ PMC: PMC2798823\
\ \\ Siepel A, Haussler D.\ Phylogenetic Hidden Markov Models.\ In: Nielsen R, editor. Statistical Methods in Molecular Evolution.\ New York: Springer; 2005. pp. 325-351.\ DOI: 10.1007/0-387-27733-1_12\
\ \\ Siepel A, Pollard KS, and Haussler D. New methods for detecting\ lineage-specific selection. In Proceedings of the 10th International\ Conference on Research in Computational Molecular Biology (RECOMB 2006), pp. 190-205.\ DOI: 10.1007/11732990_17\
\ compGeno 1 compositeTrack on\ dragAndDrop subTracks\ group compGeno\ longLabel Hiller Lab 470 Mammals - 470 mammalian genomes aligned with Multiz by Michael Hiller's Group,\ shortLabel Hiller Lab 470 Mammals\ subGroup1 view Views align=Multiz_Alignments phyloP=Basewise_Conservation_(phyloP) phastcons=Element_Conservation_(phastCons) elements=Conserved_Elements\ track cons470way\ type bed 4\ visibility hide\ hprcDecomposed HPRC All Variants vcfTabix HPRC variants decomposed from hprc-v1.0-mc.grch38.vcfbub.a100k.wave.vcf.gz (Liao et al 2023), no size filtering 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\
\ \There are three subtracks in this superTrack:\
- \
- All short variants up to 50bp, without any length filter\
- All short variants <= 3 bp long\
- All short variants > 3 bp long\
\ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\
\ The exact tools and commands used to produce the VCFs are given\ here."
\ \Display Conventions and Configuration
\\ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \
Methods
\\ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\
\ \Credits
\\ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\
\ \References
\\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\
\ \\ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\
\ \\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\
\ \\ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\
\ hprc 1 bigDataUrl /gbdb/hg38/hprc/decomposed.vcf.gz\ configureByPopup off\ dataVersion August 2023\ html hprcVCF\ longLabel HPRC variants decomposed from hprc-v1.0-mc.grch38.vcfbub.a100k.wave.vcf.gz (Liao et al 2023), no size filtering\ maxWindowToDraw 200000\ parent hprcVCF\ shortLabel HPRC All Variants\ showHardyWeinberg on\ track hprcDecomposed\ type vcfTabix\ visibility hide\ hprc2v21Sv HPRC v2.1 233 SVs bigBed 9 + Structural Variants from HPRC v2.1 Pangenome Graph (233 samples, minigraph-cactus) 0 100 0 0 0 127 127 127 0 0 0Description
\\ A pangenome graph holds many human genomes at once. Sequence that the\ genomes share collapses onto common paths, and the places where they\ differ show up as bubbles in the graph. This track shows the structural\ variants found in version 2.1 of the Human Pangenome Reference Consortium\ (HPRC) minigraph-cactus graph, which was built from haplotype-resolved\ PacBio HiFi assemblies of 233 samples. Only larger events are shown here:\ insertions and deletions of at least 50 bp. HPRC produces one variant file\ per reference path, so the events are measured against GRCh38 on hg38 and\ against T2T-CHM13 on hs1, and each assembly shows its own native callset.\
\\ On hg38 there are about 550,000 such alleles (roughly 422,000 insertions and\ 128,000 deletions). On hs1 there are about 541,000 (roughly 348,000\ insertions and 193,000 deletions). The two sets are not lifted between\ assemblies; the counts differ because an insertion against one reference can\ be a deletion against the other.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
\| \ | Insertion (INS) |
|---|---|
| \ | Deletion (DEL) |
\ An insertion is drawn as a 1 bp anchor at the point where the extra\ sequence goes in. A deletion spans the stretch of reference that is\ missing. Each variant keeps its allele count, allele frequency, the\ number of samples with data, and the level it sits at in the graph's\ snarl tree. A snarl level of 0 is a top-level bubble; higher numbers are\ bubbles nested inside a parent bubble. All of these can be used as\ filters.\
\ \Methods
\\ HPRC release 2 does not yet have a peer-reviewed paper. The graph was\ built with minigraph-cactus from haplotype-resolved PacBio HiFi assemblies\ of 233 samples, including T2T-CHM13 and the diverse 1000 Genomes Project\ panel, using GRCh38 as the reference path. Variants were called from the\ graph with vg deconstruct. HPRC keeps the sample list and assembly\ provenance in\ \ alignments_v2.0.csv.\
\\ We started from the per-reference files provided by the HPRC graph team,\ hprc-v2.1-mc-grch38.gref95.ro.vcf.gz for hg38 and\ hprc-v2.1-mc-chm13.gref95.ro.vcf.gz for hs1. These are the raw\ vg deconstruct output: each graph bubble is one multi-allelic\ record with its graph traversals attached, and there are no per-allele type\ or length fields. To turn a file into a track, we compared every alternate\ allele to the reference allele after trimming the sequence they share at\ each end. An allele was kept when the net length change was at least 50 bp,\ and labeled an insertion when the alternate is longer or a deletion when it\ is shorter. At this size no balanced, equal-length substitutions came up,\ and the files carry no inversion calls, so the track has only insertions and\ deletions. On hg38, 549,649 alleles were kept (40,678 at nested snarl\ levels); on hs1, 541,176 (70,200 nested), after removing byte-identical\ duplicate records. Because these files are not broken\ down into atomic indels, one bubble can appear as a single large allele\ rather than several small ones, so the counts are not comparable to a\ wave-decomposed callset. Allele counts, frequencies and sample counts come\ straight from the VCF.\
\\ The conversion script and autoSql schema are in\ \ makeDb/scripts/lrSv and the build steps are in the makeDoc at\ \ doc/hg38/lrSv.txt, and the track configuration is in\ trackDb/human/lrSv.ra.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator, and read programmatically\ through our API,\ track=hprc2v21Sv. For automated download and analysis the variants\ are in a bigBed file on our download server, one per assembly:\ \ hg38 and\ \ hs1. You can pull out one region or the whole set with\ bigBedToBed, for example\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/hprc2v21.bb -chrom=chr21 -start=0 -end=100000000 stdout.\
\ \Credits
\\ Thanks to the Human Pangenome Reference Consortium for building and\ releasing the release-2 minigraph-cactus pangenome, and to Glenn Hickey\ for the v2.1 deconstructed VCF.\
\ \References
\\ HPRC release 2 is not yet described in a peer-reviewed publication. The\ release announcement has background and data-access details:\ \ HPRC data release 2.\
\ varRep 1 bigDataUrl /gbdb/hg38/lrSv/hprc2v21.bb\ filter.AC 0:463\ filter.alleleFreq 0:1\ filter.insLen 0:1064897\ filter.snarlLevel 0:7\ filter.svLen 0:99835\ filterByRange.AC on\ filterByRange.alleleFreq on\ filterByRange.insLen on\ filterByRange.snarlLevel on\ filterByRange.svLen on\ filterLabel.AC Allele Count\ filterLabel.alleleFreq Allele Frequency\ filterLabel.insLen Insertion Length\ filterLabel.snarlLevel Snarl Level\ filterLabel.svLen SV Length\ filterLabel.svType SV Type\ filterLimits.alleleFreq 0:1\ filterType.svType multipleListOr\ filterValues.svType INS,DEL\ itemRgb on\ longLabel Structural Variants from HPRC v2.1 Pangenome Graph (233 samples, minigraph-cactus)\ mouseOver Var: $name ($svType)SV len: $svLen
Ins len: $insLen
AF: $alleleFreq
AC: $AC/$alleleNumber
Samples: $nSamples\ parent longReadVariants\ shortLabel HPRC v2.1 233 SVs\ skipEmptyFields on\ track hprc2v21Sv\ type bigBed 9 +\ visibility hide\ hprcVCFDecomposedUnder4 HPRC Variants <= 3bp vcfTabix HPRC VCF variants filtered for items size <= 3bp 3 100 0 0 0 127 127 127 0 0 0
Description
\ \\ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\
\ \There are three subtracks in this superTrack:\
- \
- All short variants up to 50bp, without any length filter\
- All short variants <= 3 bp long\
- All short variants > 3 bp long\
\ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\
\ The exact tools and commands used to produce the VCFs are given\ here."
\ \Display Conventions and Configuration
\\ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \
Methods
\\ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\
\ \Credits
\\ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\
\ \References
\\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\
\ \\ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\
\ \\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\
\ \\ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\
\ hprc 1 bigDataUrl /gbdb/hg38/hprc/decomposedUnder4.vcf.gz\ configureByPopup off\ dataVersion August 2023\ html hprcVCF\ longLabel HPRC VCF variants filtered for items size <= 3bp\ maxWindowToDraw 200000\ parent hprcVCF\ shortLabel HPRC Variants <= 3bp\ showHardyWeinberg on\ track hprcVCFDecomposedUnder4\ type vcfTabix\ visibility pack\ hprcVCFDecomposedOver3 HPRC Variants > 3bp vcfTabix HPRC VCF variants filtered for items size > 3bp 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\
\ \There are three subtracks in this superTrack:\
- \
- All short variants up to 50bp, without any length filter\
- All short variants <= 3 bp long\
- All short variants > 3 bp long\
\ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\
\ The exact tools and commands used to produce the VCFs are given\ here."
\ \Display Conventions and Configuration
\\ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \
Methods
\\ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\
\ \Credits
\\ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\
\ \References
\\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\
\ \\ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\
\ \\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\
\ \\ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\
\ hprc 1 bigDataUrl /gbdb/hg38/hprc/decomposedOver3.vcf.gz\ configureByPopup off\ dataVersion August 2023\ html hprcVCF\ longLabel HPRC VCF variants filtered for items size > 3bp\ maxWindowToDraw 200000\ parent hprcVCF\ shortLabel HPRC Variants > 3bp\ showHardyWeinberg on\ track hprcVCFDecomposedOver3\ type vcfTabix\ visibility hide\ hgIkmc IKMC Genes Mapped bed 12 International Knockout Mouse Consortium Genes Mapped to Human Genome 0 100 0 0 0 127 127 127 0 0 0 http://www.mousephenotype.org/data/genes/$$Description
\\ This track shows genes targeted by \ International Knockout Mouse Consortium (IKMC)\ mapped to the human genome. IKMC is a \ collaboration to generate a public resource of mouse embryonic stem (ES)\ cells containing a null mutation in every gene in the mouse genome.\ Gene targets are color-coded by status:\
- \
- Green: Reagent(s) Available \
- Yellow: In Progress \
- Blue: Not Started/On Hold \
- Black: Withdrawn/Problematic \
\ The KnockOut Mouse Project Data\ Coordination Center (KOMP DCC) is the central database resource\ for coordinating mouse gene targeting within IKMC and provides\ web-based query and display tools for IKMC data. In addition, the\ KOMP DCC website provides a tool for the scientific community to\ nominate genes of interest to be knocked out by the KOMP initiative.
\ \\ IKMC members include\
- \
- KnockOut Mouse Project (KOMP), a trans-NIH initiative (USA) \
- European Conditional Mouse Mutagenesis Program (EUCOMM), funded by the\ European Union Framework 6 programme (EU) \
- North American Conditional Mouse Mutagenesis Project\ (NorCOMM), a Genome Prairie Project (Canada) \
- Texas A&M\ Institute for Genomic Medicine (TIGM) (USA) \
Methods
\\ Using complementary targeting strategies, the IKMC centers\ design and create targeting vectors, mutant ES cell lines and, to some\ extent, mutant mice, embryos or sperm. Materials are distributed to\ the research community.
\\ The KOMP Repository\ archives, maintains, and distributes IKMC products. Researchers can\ order products and get product information from the\ Repository. Researchers can also express interest in products that are\ still in the pipeline. They will then receive email notification as\ soon as KOMP generated products are available for distribution.
\\ The process for ordering EUCOMM materials can be found \ here.
\\ The process for ordering TIGM materials can be found \ here.
\\ Information on NorCOMM products and services can be found \ here.\
\ Genes were mapped to the human genome by IKMC.\
\ \Credits
\\ Thanks to the International Knockout Mouse Consortium, and Carol Bult in \ particular, for providing these data.
\ \References
\\
Austin CP, Battey JF, Bradley A, Bucan M, Capecchi M, Collins FS, Dove WF, Duyk G, Dymecki S, Eppig\
JT et al.\
\
The knockout mouse project.\
Nat Genet. 2004 Sep;36(9):921-4.\
PMID: 15340423; PMC:
\ Collins FS, Finnell RH, Rossant J, Wurst W.\ \ A new partner for the international knockout mouse consortium.\ Cell. 2007 Apr 20;129(2):235.\ PMID: 17448981\
\ \\ International Mouse Knockout Consortium, Collins FS, Rossant J, Wurst W.\ \ A mouse for all reasons.\ Cell. 2007 Jan 12;128(1):9-13.\ PMID: 17218247\
\ genes 1 exonNumbers off\ group genes\ itemRgb on\ longLabel International Knockout Mouse Consortium Genes Mapped to Human Genome\ mgiUrl https://www.informatics.jax.org//marker/$$\ mgiUrlLabel MGI Report:\ noScoreFilter .\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel IKMC Genes Mapped\ track hgIkmc\ type bed 12\ url http://www.mousephenotype.org/data/genes/$$\ urlLabel KOMP Data Coordination Center:\ visibility hide\ ileumWangCellType Ileum Cells bigBarChart Ileum cells binned by cell type from Wang et al 2020 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=human-intestine+ileum&gene=$$Description
\\ This track shows data from \ Single-cell transcriptome analysis reveals differential nutrient absorption\ functions in human intestine. Droplet-based single-cell RNA sequencing\ (scRNA-seq) was used to survey gene expression profiles of the epithelium in\ the human ileum, colon, and rectum. A total of 7 cell clusters were identified:\ enterocytes (EC), goblet cells (G), paneth-like cells (PLC), enteroendocrine\ cells (EEC), progenitor cells (PRO), transient-amplifying cells (TA) and stem\ cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in ileum\ cells where cells are grouped by cell type\ (Ileum Cells) or donor\ (Ileum Donor). The default track\ displayed is Ileum Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Ileum Donor track \ is colored by donor for improved clarity.
\ \Method
\\ Using single-cell RNA sequencing, RNA profiles of intestinal epithelial cells\ were obtained for 6,167 cells from two human ileum samples. Tissue samples\ belonged to a male donor age 60 with Neuroendocrine Carcinoma (Ileum-1) and a\ female donor age 67 with Adenocarcinoma (Ileum-2). The healthy intestinal\ mucous membranes used for each sample were cut away from the tumor border in\ surgically removed ileum tissue. Additionally, the intestinal tissues were\ washed in Hank's balanced salt solution (HBSS) to remove mucus, blood cells,\ and muscle tissue. The sample was enriched for epithelial cells through \ centrifugation before being dissociated with Tryple to obtain single-cell \ suspensions. RNA-seq libraries were prepared using 10x Genomics 3' v2 kit and \ sequenced on an Illumina Hiseq X Ten PE150.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\ \\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track shows data from \ Single-cell transcriptome analysis reveals differential nutrient absorption\ functions in human intestine. Droplet-based single-cell RNA sequencing\ (scRNA-seq) was used to survey gene expression profiles of the epithelium in\ the human ileum, colon, and rectum. A total of 7 cell clusters were identified:\ enterocytes (EC), goblet cells (G), paneth-like cells (PLC), enteroendocrine\ cells (EEC), progenitor cells (PRO), transient-amplifying cells (TA) and stem\ cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in ileum\ cells where cells are grouped by cell type\ (Ileum Cells) or donor\ (Ileum Donor). The default track\ displayed is Ileum Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Ileum Donor track \ is colored by donor for improved clarity.
\ \Method
\\ Using single-cell RNA sequencing, RNA profiles of intestinal epithelial cells\ were obtained for 6,167 cells from two human ileum samples. Tissue samples\ belonged to a male donor age 60 with Neuroendocrine Carcinoma (Ileum-1) and a\ female donor age 67 with Adenocarcinoma (Ileum-2). The healthy intestinal\ mucous membranes used for each sample were cut away from the tumor border in\ surgically removed ileum tissue. Additionally, the intestinal tissues were\ washed in Hank's balanced salt solution (HBSS) to remove mucus, blood cells,\ and muscle tissue. The sample was enriched for epithelial cells through \ centrifugation before being dissociated with Tryple to obtain single-cell \ suspensions. RNA-seq libraries were prepared using 10x Genomics 3' v2 kit and \ sequenced on an Illumina Hiseq X Ten PE150.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\ \\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track shows data from \ Single-cell transcriptome analysis reveals differential nutrient absorption\ functions in human intestine. Droplet-based single-cell RNA sequencing\ (scRNA-seq) was used to survey gene expression profiles of the epithelium in\ the human ileum, colon, and rectum. A total of 7 cell clusters were identified:\ enterocytes (EC), goblet cells (G), paneth-like cells (PLC), enteroendocrine\ cells (EEC), progenitor cells (PRO), transient-amplifying cells (TA) and stem\ cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in ileum\ cells where cells are grouped by cell type\ (Ileum Cells) or donor\ (Ileum Donor). The default track\ displayed is Ileum Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Ileum Donor track \ is colored by donor for improved clarity.
\ \Method
\\ Using single-cell RNA sequencing, RNA profiles of intestinal epithelial cells\ were obtained for 6,167 cells from two human ileum samples. Tissue samples\ belonged to a male donor age 60 with Neuroendocrine Carcinoma (Ileum-1) and a\ female donor age 67 with Adenocarcinoma (Ileum-2). The healthy intestinal\ mucous membranes used for each sample were cut away from the tumor border in\ surgically removed ileum tissue. Additionally, the intestinal tissues were\ washed in Hank's balanced salt solution (HBSS) to remove mucus, blood cells,\ and muscle tissue. The sample was enriched for epithelial cells through \ centrifugation before being dissociated with Tryple to obtain single-cell \ suspensions. RNA-seq libraries were prepared using 10x Genomics 3' v2 kit and \ sequenced on an Illumina Hiseq X Ten PE150.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The\ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\ \\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track associates UCSC Genome Browser chromosome names to accession\ names from the International Nucleotide Sequence Database Collaboration (INSDC).\
\ \\ The data were downloaded from the NCBI assembly database.\
\ \Credits
\ The data for this track was prepared by\
Hiram Clawson.\
\
map 1 group map\
longLabel Accession at INSDC - International Nucleotide Sequence Database Collaboration\
shortLabel INSDC\
track ucscToINSDC\
type bed 4\
url https://www.ncbi.nlm.nih.gov/nuccore/$$\
urlLabel INSDC link:\
visibility hide\
ghInteraction Interactions bigInteract GeneHancer Regulatory Elements and Gene Interactions 2 100 0 0 0 127 127 127 0 0 0 https://www.genecards.org/cgi-bin/carddisp.pl?gene=$ \
This track represents the genome-wide predicted binding \
sites for TF (transcription factor) binding profiles in the \
JASPAR \
database CORE collection.\
\
Shaded boxes represent predicted binding sites for each of the TF profiles\
in the JASPAR CORE collection. The shading of the boxes indicates \
the p-value of the profile's match to that position (scaled between \
0-1000 scores, where 0 corresponds to a p-value of 1 and 1000 to a \
p-value ≤ 10-10). Thus, the darker the shade, the \
lower (better) the p-value. \
The default view shows only predicted binding sites with scores of 400 or greater but\
can be adjusted in the track settings. Multi-select filters allow viewing of\
particular transcription factors. At window sizes of greater than\
10,000 base pairs, this track turns to density graph mode. \
Zoom to a smaller region and click into an item to see more detail. \
From BED format documentation:\
\
Conversion table: \
For each TF binding profile in the JASPAR database CORE collection, genomes were scanned for matches.\
\
For the computation of relative scores and p-values, we used PWMScan (Ambrosini et al. 2018). \
We selected TFBS predictions with a PWM relative score ≥ 0.8 and a p-value < 0.05.\
P-values were scaled between 0 (corresponding to a p-value of 1) and 1000 (p-value ≤ 10-10)\
for colouring of the genome tracks and to allow for comparison of prediction confidence between \
different profiles.\
\
Please refer to the supplementary information of the JASPAR 2020 manuscript for more details.\
\
The JASPAR 2026 update expanded the JASPAR CORE collection by 12% (306\
added or upgraded profiles), culminating to a set of 2633 non-redundant\
TF binding profiles. Genome sequences were scanned with JASPAR 2026\
CORE TF binding profiles for each taxon independently using PWMScan.\
TFBS predictions were selected with a PWM relative score ≥ 0.8 and a\
p-value < 0.05. P-values were scaled between 0 (corresponding to a\
p-value of 1) and 1000 (p-value ≤ 10-10) for coloring of the genome\
tracks and to allow for comparison of prediction confidence between\
different profiles. More information on the methods can be found in the\
JASPAR 2026 \
publication or on the\
JASPAR website. \
The JASPAR 2024 update expanded the JASPAR CORE collection by 20% (329 added and 72 upgraded\
profiles). The new profiles were introduced after manual curation, in which 26 629 TF binding\
motifs were curated and obtained as PFMs or discovered from ChIP-seq/-exo or DAP-seq data. 2500\
profiles from JASPAR 2022 were revised to either promote them to the CORE collection, update the\
associated metadata, or remove them because of validation inconsistencies or poor quality. The\
JASPAR database stores and focuses mostly on PFMs as the model of choice for TF-DNA interactions.\
More information on the methods can be found in the\
\
JASPAR 2024 publication or on the\
JASPAR website. \
JASPAR 2022 contains updated transcription factor binding sites\
with additional transcription factor profiles. More information on the methods can be found in the\
\
JASPAR 2022 publication\
JASPAR 2022 publication or on the\
JASPAR website. \
JASPAR 2020 scanned DNA sequences with JASPAR CORE TF-binding profiles \
for each taxa independently using PWMScan. TFBS predictions were selected with \
a PWM relative score ≥ 0.8 and a p-value < 0.05. P-values were scaled \
between 0 (corresponding to a p-value of 1) and 1000 (p-value ≤ 10-10) for \
coloring of the genome tracks and to allow for comparison of prediction \
confidence between different profiles. \
JASPAR 2018 used the TFBS Perl module (Lenhard and Wasserman 2002) \
and FIMO (Grant, Bailey, and Noble 2011), as distributed within the MEME suite \
(version 4.11.2) (Bailey et al. 2009). For scanning genomes with the \
BioPerl TFBS module, profiles were converted to PWMs and matches were kept with a \
relative score ≥ 0.8. For the FIMO scan, profiles were reformatted to MEME motifs \
and matches with a p-value < 0.05 were kept. TFBS predictions that were not \
consistent between the two methods (TFBS Perl module and FIMO) were removed. The \
remaining TFBS predictions were colored according \
to their FIMO p-value to allow for comparison of prediction confidence between \
different profiles. \
JASPAR Transcription Factor Binding data includes billions of items.\
Because of the data size, the Table Browser does not allow "Genome" as a query region for this\
track. Limited regions can be explored interactively with the\
Table Browser and cross-referenced with \
Data Integrator, although positional\
queries that are too big can lead to timing out. This results in a black page\
or truncated output. In this case, you may try reducing the chromosomal query to\
a smaller window. \
For programmatic access, \
the track can be accessed using the Genome Browser's \
REST API. \
JASPAR annotations can be downloaded from the\
Genome Browser's download server\
as a bigBed file. This compressed binary format can be remotely queried through\
command line utilities. Please note that some of the download files can be quite large. \
The utilities for working with bigBed-formatted binary files can be downloaded\
here.\
Run a utility with no arguments to see a brief description of the utility and its options.\
Description
\
Display Conventions and Configuration
\
\
\
\
\
\
\
shade \
\
\
\
\
\
\
\
\
\
\
\
\
score in range \
≤ 166 \
167-277 \
278-388 \
389-499 \
500-611 \
612-722 \
723-833 \
834-944 \
≥ 945 \
\
\
\
\
\
Item score \
0 \
100 \
131 \
200 \
300 \
400 \
500 \
600 \
700 \
800 \
900 \
1000 \
\
\
p-value \
1 \
0.1 \
0.049 \
10-2 \
10-3 \
10-4 \
10-5 \
10-6 \
10-7 \
10-8 \
10-9 \
≤ 10-10 \
Methods
\
Brief overview of each release
\
Data Access
\
\
\
Example: retrieve all JASPAR items in chr1:200001-200400
\ \bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/jaspar/JASPAR2024.bb -chrom=chr1 -start=200000 -end=200400 stdout\ \
\ All data are freely available.\ Additional resources are available directly from the JASPAR group:
\- \
- Binding site predictions for all and individual TF profiles are available for download \ at https://mencius.uio.no/JASPAR/JASPAR_genome_browser_tracks/. \
- Code used to create the UCSC tracks is available at https://github.com/ievarau/JASPAR-UCSC-tracks/tree/master. \
- The underlying JASPAR motif data is available through the JASPAR website at https://jaspar.elixir.no. \
Other Genomes
\The JASPAR group provides TFBS predictions for many additional species and \ genomes. The 2026 release is available as a native track on the following genomes, and additionally \ on mm10 and araTha1 by connection to their \ \ Public Hub or by clicking the assembly links below:
\| Species | \Genome assembly versions | \
| Human - Homo sapiens | \hg38 | \
| Mouse - Mus musculus | \mm39 | \
| Zebrafish - Danio rerio | \danRer11 | \
| Fruitfly - Drosophila melanogaster | \dm6 | \
| Nematode - Caenorhabditis elegans | \ce11 | \
| Vase tunicate - Ciona intestinalis | \ci3 | \
| Thale cress - Arabidopsis thaliana | \araTha1 | \
| Yeast - Saccharomyces cerevisiae | \sacCer3 | \
| Chicken - Gallus gallus | \galGal6 | \
Credits
\\ The JASPAR database is a joint effort between several labs (please see the latest JASPAR \ paper, below). Binding site predictions and UCSC tracks were computed by the CBGR team \ at NCMBM using code developed at the Wasserman Lab. For enquiries about the data, \ please contact Anthony Mathelier (\ \ anthony.\ mathelier@ncmbm.\ uio.\ no\ \ ) or Ieva Rauluseviciute (\ \ ieva.\ rauluseviciute@ncmbm.\ uio.\ no\ \ ).\
\ \\\CBGR
\
\ Computational Biology & Gene Regulation
\ Norwegian Centre for Molecular Biosciences and Medicine (NCMBM)
\ University of Oslo
\ Oslo, Norway\
\\ \ \Wasserman Lab
\
\ Centre for Molecular Medicine and Therapeutics
\ BC Children's Hospital Research Institute
\ Department of Medical Genetics
\ University of British Columbia
\ Vancouver, Canada\
References
\\ Ovek Baydar D, Rauluseviciute I, Aronsen DR, Blanc-Mathieu R, Bonthuis I, de Beukelaer H, Ferenc K,\ Jegou A, Kumar V, Lemma RB et al.\ \ JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models.\ Nucleic Acids Res. 2026;\ PMID: 41325984; PMC: PMC12807658\
\ \\ Sandelin A, Alkema W, Engstrom P, Wasserman WW, Lenhard B.\ \ JASPAR: an open-access database for eukaryotic transcription factor binding profiles.\ Nucleic Acids Res. 2004;.\ PMID: 14681366\
\ \ regulation 1 compositeTrack on\ exonArrows on\ filter.score 400\ filterByRange.score 0:1000\ group regulation\ longLabel JASPAR Transcription Factor Binding Site Database\ maxWindowCoverage 15000\ noGenomeReason JASPAR files contain billions of items. The Table Browser allows regional queries for this track, but those may timeout if the regions are too big. See the Data Access section in the track description page for other ways to query this data, such as command-line tools and our API.\ noParentConfig on\ shortLabel JASPAR Transcription Factors\ spectrum on\ tableBrowser tbNoGenome\ track jaspar\ type bigBed 6 .\ url http://jaspar.genereg.net/search?q=$$&collection=all&tax_group=all&tax_id=all&type=all&class=all&family=all&version=all\ urlLabel View on JASPAR:\ visibility hide\ KICH KICH bigLolly 12 + Kidney Chromophobe 0 100 0 0 0 127 127 127 0 0 0 phenDis 1 autoScale on\ bigDataUrl /gbdb/hg38/gdcCancer/KICH.bb\ configurable off\ group phenDis\ lollyField 13\ longLabel Kidney Chromophobe\ parent gdcCancer off\ priority \ shortLabel KICH\ track KICH\ type bigLolly 12 +\ urls case_id=https://portal.gdc.cancer.gov/cases/193294\ kidneyStewartBroadCellType Kidney Broad CT bigBarChart Kidney RNA binned by broad cell type from Stewart et al 2019 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=kidney-atlas+mature-full&gene=$$Description
\\ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \
\ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| kidney specific | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
Description
\\ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \
\ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| kidney specific | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
Description
\\ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \
\ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| kidney specific | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
Description
\\ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \
\ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| kidney specific | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
Description
\\ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \
\ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| kidney specific | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
Description
\\ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \
\ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| kidney specific | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
Description
\\ This track displays data from Spatiotemporal immune zonation of the human kidney. \ Droplet-based single-cell RNA sequencing (scRNA-seq) was used to profile 40,268 \ mature human kidney cells. After principal component analysis, identified clusters \ were manually curated into four major cellular compartments using canonical markers \ as found in Stewart et al., 2019: endothelial, immune, fibroblast, and epithelium.\ \
\ This track collection contains six bar chart tracks of RNA expression in the\ human kidney where cells are grouped by merged cell type \ (Kidney Cells), broad cell type \ (Kidney Broad CT), detailed cell type \ (Kidney Details), compartment\ (Kidney Compartment), experiment \ (Kidney Experiment), and project \ (Kidney Project).\ The default track displayed is \ Kidney Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| kidney specific | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ 14 mature healthy human kidney samples were obtained from individuals (ages\ 1-72) that either underwent tumor nephrectomy (n=10) or from kidneys donated\ for transplantation (n=4) but were unsuitable for use. Kidney tissues from\ tumor nephrectomies were collected from unaffected areas estimated to be\ corticomedullary. Samples were enzymatically dissociated and enriched for live\ cells (experiment set 1) or enriched for leukocytes with a density gradient and\ then for live cells (experiment set 2). Single cell libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina HiSeq4000.
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Benjamin J Stewart, John R Ferdinand, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
Description
\ \\ This track shows alignments from the hg38 to the hg19 genome assembly, used by the UCSC\ liftOver tool and \ NCBI's ReMap\ service, respectively.\ \
Display Conventions and Configuration
\ \The track has three subtracks, one for UCSC and two for NCBI alignments.
\\ The alignments are shown as "chains" of alignable regions. The display is similar to\ the other chain tracks, see our \ \ chain display documentation for more information.\
\ \ \Data access
\\ UCSC liftOver chain files for hg19 to hg38 can be obtained from a dedicated directory on our\ \ Download server. The NCBI chain file can be obtained from the\ \ MySQL tables directory on our download server, the filename is 'chainHg19ReMap.txt.gz'.\
\ \\ Both tables can also be explored interactively with the\ Table Browser or the\ Data Integrator.\
\ \Methods
\ ReMap 2.2 alignments were downloaded from the \ \ NCBI FTP site and converted with the UCSC kent command line tools. The UCSC tool chainSwap was\ used to swap target and query genome to show the mappings on the hg38 genome. Like all data\ processing for the genome browser, the procedure is documented in our\ \ hg19 makeDoc file.\ \Credits
\\ Thanks to NCBI for making the ReMap data available and to Angie Hinrichs for the file conversion.\
\ map 1 compositeTrack on\ group map\ longLabel UCSC LiftOver and NCBI ReMap: Genome alignments to convert annotations to hg19\ shortLabel LiftOver & ReMap\ track liftHg19\ type chain\ visibility hide\ lincRNAsTranscripts lincRNA TUCP genePred lincRNA and TUCP transcripts 3 100 100 50 0 175 150 128 0 0 0Description
\ \This track displays the Human Body Map lincRNAs (large intergenic non\ coding RNAs) and TUCPs (transcripts of uncertain coding potential), as well as their\ expression levels across 22 human tissues and cell lines. The Human Body Map catalog was generated\ by integrating previously existing annotation sources with transcripts that were de-novo assembled\ from RNA-Seq data. These transcripts were collected from ~4 billion RNA-Seq reads across 24 tissues \ and cell types.
\ \Expression abundance was estimated by Cufflinks (Trapnell et al., 2010) based on RNA-Seq. \
Expression abundances were estimated on the gene locus level, rather than for each transcript \
separately and are given as raw FPKM. The prefixes tcons_ and tcons_l2_ are used to describe \
lincRNAs and TUCP transcripts, respectively. Specific details about the catalog generation and data \
sets used for this study can be found in Cabili et al (2011). Extended \
characterization of each transcript in the human body map catalog can be found at the
Expression abundance scores range from 0 to 1000, and are displayed from light blue to dark blue\ respectively:
\ \ \Credits
\ \The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.
\ \References
\ \\
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\
\
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\
specific subclasses.\
Genes Dev. 2011 Sep 15;25(18):1915-27.\
PMID: 21890647; PMC:
\
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\
L.\
\
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\
switching during cell differentiation.\
Nat Biotechnol. 2010 May;28(5):511-5.\
PMID: 20436464; PMC:
Description
\\ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.
\ \\ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune | |
| endothelial | |
| fibroblast | |
| epithelial | |
| stem cell | |
| hepatocyte |
\ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.
\ \ \ \ \ \Method
\\ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\
I et al.\
\
Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\
Nat Commun. 2018 Oct 22;9(1):4383.\
PMID: 30348985; PMC:
Description
\\ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.
\ \\ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune | |
| endothelial | |
| fibroblast | |
| epithelial | |
| stem cell | |
| hepatocyte |
\ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.
\ \ \ \Relevant Figures From MacParland et al., 2018
\ \\ Map of the human liver and its associated cell types. The liver is constructed\ of hepatic lobules which are composed of a portal triad (hepatic artery, the\ portal vein and the bile duct), hepatocytes aligned between a capillary\ network, and a central vein.\ \
\
\
\
MacParland et al. Nat\
Commun. 2018. / CC BY 4.0\
\
\
\
Method
\\ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\
I et al.\
\
Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\
Nat Commun. 2018 Oct 22;9(1):4383.\
PMID: 30348985; PMC:
Description
\\ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.
\ \\ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune | |
| endothelial | |
| fibroblast | |
| epithelial | |
| stem cell | |
| hepatocyte |
\ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.
\ \ \ \Relevant Figures From MacParland et al., 2018
\ \\ Contribution of cells from each liver sample to each cell cluster. Note that\ the liver number corresponds to the donor number (e.g. Liver 1 = Donor 1).
\ \\
\
\
MacParland et al. Nat\
Commun. 2018. / CC BY 4.0
\ \
\ t-SNE plot of human liver resident cells colored by source donor (Liver 1-5)\ and labeled with cluster number.
\ \\
\
\
MacParland et al. Nat\
Commun. 2018. / CC BY 4.0
Method
\\ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\
I et al.\
\
Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\
Nat Commun. 2018 Oct 22;9(1):4383.\
PMID: 30348985; PMC:
Description
\\ This track shows data from \ Single cell RNA sequencing of human liver reveals distinct intrahepatic\ macrophage populations. Liver tissue was analyzed using droplet-based \ single-cell RNA-sequencing (scRNA-seq) and subsequent clustering distinguished 20\ hepatic cell populations based on their identified marker genes found in\ MacParland et al., 2018.
\ \\ There are three bar chart tracks in this track collection with liver cells\ grouped by either broad cell type \ (Liver Broad), specific cell type \ (Liver Cells) and donor \ (Liver Donor). The default track displayed is \ Liver Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| immune | |
| endothelial | |
| fibroblast | |
| epithelial | |
| stem cell | |
| hepatocyte |
\ Cells that fall into multiple classes will be colored by blending the colors associated \ with those classes. The colors will be purest in the \ Liver Cells subtrack,\ where the bars represent relatively pure cell types. They can give an overview\ of the cell composition within other categories in other subtracks as well.
\ \ \\ The default track displayed is liver RNA grouped by cell type.
\ \ \Method
\\ Fresh liver samples were taken from 5 neurologically deceased donors (NDD)\ deemed acceptable for liver transplantation. The caudate lobe of the liver was\ surgically separated and flushed with HTK solution to leave only tissue\ resident cells that were used to prepare a cell suspension for scRNA-seq\ analysis. Samples were prepared using 10x Genomics 3' v2 library kit and\ sequenced on the Illumina HiSeq 2500. A total of 8,444 transcriptional profiles\ were obtained for organ specific and non-organ specific cells from healthy\ hepatic tissue.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used \ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on \ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Sonya MacParland and to the many authors who worked on producing and\ publishing this data set. The data were integrated into the UCSC Genome Browser\ by Jim Kent and Brittney Wick then reviewed by Daniel Schmelter. The UCSC work \ was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\
I et al.\
\
Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\
Nat Commun. 2018 Oct 22;9(1):4383.\
PMID: 30348985; PMC:
Description
\\ This track collection contains structural variant (SV) calls derived from long-read sequencing\ studies. Structural variants are genomic rearrangements larger than ~50 bp, including\ deletions, insertions, duplications, inversions, and translocations. Long-read sequencing\ technologies can span repetitive regions and resolve complex rearrangements\ that are difficult to detect with short-read methods.\
\ \Available Datasets
\\ SV length statistics (min / median / max) are computed from the svLen\ field of each track, in base pairs. Some tracks include sites with\ svLen=0 (complex events where the reference and alternate alleles\ differ in sequence but not in length).\
\\ For short-read structural-variant comparators (CCDG 17,795, 1KG 3202,\ ToMMo 48K CNV) see the companion\ Short-read SVs supertrack.\
\\ Polymorphic Mobile Element Insertions (Alu, L1, SVA, HERVK,\ snRNA) called from HGSVC3 long-read assemblies are released as a\ separate track collection; see the\ Mobile Insertions tracks. Those MEIs are\ the insertions identified in the 65 HGSVC3 samples relative to the\ reference, available on both GRCh38/hg38 and T2T-CHM13/hs1.\
\| Dataset | \N samples | \Cohort / disease | \Disease cases | \Coverage | \SV count | \Min | \Median | \Max | \
|---|---|---|---|---|---|---|---|---|
| All merged | \— | \All long-read SV datasets merged on identical position+type+length, with per-database AC | \mixed | \mixed (PacBio HiFi, ONT) | \2,317,508 | \1 | \147 | \57,207,413 | \
| CoLoRSdb | \1,427 | \Consortium of Long-Read Sequencing, joint callset | \No | \mixed (HiFi) | \426,239 | \20 | \33 | \101,381 | \
| Han 945 | \945 | \Han Chinese, general population | \No | \~17x ONT | \111,288 | \1 | \254 | \99,744 | \
| 1KG ONT 100 | \100 | \1000 Genomes, 5 superpopulations / 19 subpopulations | \No | \~37x ONT (R9.4.1) | \113,159 | \1 | \167 | \98,290 | \
| 1KG ONT Vienna | \1,019 | \1000 Genomes, diverse | \No | \~17x ONT | \148,375 | \2 | \157 | \49,171 | \
| ToMMo Japanese | \333 (111 trios) | \Japanese, general population | \No | \~22x ONT | \74,201 | \51 | \158 | \99,985 | \
| AoU 1K | \1,027 | \All of Us, self-identified Black/African American; biobank includes a variety of conditions (diabetes, hearing loss, etc.) | \Yes (mixed) | \~8x HiFi | \540,155 | \50 | \152 | \9,998 | \
| GA4K | \502 | \Children's Mercy, pediatric rare disease probands + families | \Yes (probands) | \~27x HiFi | \115,554 | \50 | \186 | \809,712 | \
| deCODE 3,622 | \3,622 | \Icelandic general population | \No | \~17x ONT | \119,453 | \1 | \154 | \861,081 | \
| HPRC v2.1 | \233 | \HPRC release-2 pangenome (CHM13 + diverse 1KG assemblies) | \No | \~60x HiFi + ~30x ONT (pangenome graph) | \549,649 | \50 | \261 | \1,064,897 | \
| HGSVC2 | \32 | \HGSVC2 haplotype-resolved assemblies (5 superpopulations) | \No | \>40x PacBio CLR + >20x HiFi (+ Strand-seq) | \111,746 | \50 | \168 | \57,207,413 | \
| HGSVC3 | \65 | \HGSVC3 diverse reference assemblies | \No | \~47x HiFi + ~56x ONT | \176,531 | \50 | \154 | \30,176,500 | \
| Arab APR | \53 | \UAE-resident Arabs from 8 countries (Arab Pangenome Reference) | \No | \~35x HiFi + ~54x ONT (+ Hi-C, pangenome graph) | \72,656 | \1 | \121 | \584,016 | \
| CPC | \58 | \Chinese Pangenome Consortium, 36 minority ethnic groups (HPRC-specific SVs removed) | \No | \~30x HiFi (pangenome graph) | \36,030 | \50 | \134 | \8,998,096 | \
| SVatalog 101 | \101 | \Cystic fibrosis (CF) patients from the CF Canada-Sick Kids Program in Individual CF Therapy (CFIT). Long-read WGS used for GWAS LD fine-mapping | \Yes (all CF) | \~50x PacBio CLR (34, Sequel I) + ~76x HiFi (67, Sequel II) | \87,068 | \4 | \160 | \1,321,484 | \
\ Note: there is likely some overlap in sample composition across these collections.\ For example, 1000 Genomes samples are also included in HPRC and CoLoRSdb.\
\ \CoLoRSdb SVs
\\ Structural variants from the Consortium of Long-Read Sequencing database\ (CoLoRSdb), from 1,427 PacBio HiFi long-read whole-genome sequences.\ ~426k SVs (insertions, deletions, inversions) called with pbsv and\ merged with Jasmine, with allele frequencies, genotype counts and\ Hardy-Weinberg statistics across the cohort.\
\ \Han 945 SVs
\\ Structural variants from 945 Han Chinese individuals. ~111k SVs\ (deletions, insertions, duplications, inversions, translocations) merged with SURVIVOR.\ Includes allele frequencies and per-sample support.\
\ \1KG ONT 100 SVs
\\ Structural variants from Oxford Nanopore long-read sequencing of 100\ 1000 Genomes samples (5 superpopulations, 19 subpopulations) released\ by the 1000 Genomes ONT Sequencing Consortium and described in\ Gustafson et al. 2024. ~114k SVs (insertions, deletions, duplications,\ inversions) called with five callers and merged with Jasmine. This is a\ separate dataset from the Vienna 1KG-ONT release below; the 100 samples\ here do not overlap with the 1,019 samples in the Vienna release.\
\ \1KG ONT Vienna SVs
\\ Structural variants from 1,019 individuals across 26 populations (1000 Genomes ONT).\ ~161k SVs annotated with SVAN, classifying insertions and deletions by mechanism\ of origin (mobile elements, VNTRs, processed pseudogenes, etc.).\ Original coordinates are on T2T-CHM13 (hs1); the hg38 version was created via liftOver.\ This is a separate dataset from the 1KG ONT 100 (Gustafson et al.) track above;\ the 1,019 samples here do not overlap with the 100 samples in that release.\
\ \ToMMo Japanese SVs
\\ Structural variants from 333 Japanese individuals (111 trios) from the Tohoku Medical\ Megabank (ToMMo). ~74k SVs (deletions and insertions) with trio-based Mendelian\ error rates and allele frequencies.\
\ \AoU 1K SVs
\\ Structural variants from 1,027 individuals from the All of Us (AoU) Research Program,\ sequenced with PacBio HiFi long reads. AoU is a deeply phenotyped biobank\ that includes participants with a range of conditions (e.g. diabetes,\ hearing loss, hypertension), so the cohort is not disease-free.\ ~541k SVs (insertions and deletions) with population-specific allele\ frequencies, gene annotations, and clinical trait associations.\
\ \GA4K SVs
\\ Structural variants from 502 probands and family members enrolled in the\ Genomic Answers for Kids (GA4K) pediatric rare-disease program at Children's\ Mercy Research Institute, sequenced with PacBio HiFi long reads. ~116k\ replicated SVs (deletions, insertions, duplications, inversions) called with\ pbsv and merged with JASMINE. The matched GA4K small-variant callset (SNVs\ and short indels) lives alongside other population allele-frequency resources\ as GA4K 552 PacBio LR in the Variant\ Frequencies track collection.\
\ \deCODE 3,622 SVs
\\ High-confidence structural variants from 3,622 Icelanders (deCODE genetics),\ sequenced with Oxford Nanopore long reads. ~134k SVs (deletions, insertions\ and combined insertion/deletion events). Site-only callset with annotated\ surrounding tandem-repeat regions.\
\ \HPRC v2.1 SVs
\\ Structural variants derived from the Human Pangenome Reference Consortium\ release-2.1 minigraph-cactus pangenome graph, built from 233 PacBio HiFi\ haplotype-resolved assemblies (CHM13 + diverse 1000 Genomes samples).\ About 550k SV-sized alleles (insertions and deletions) extracted from the\ graph with vg deconstruct.\
\ \HGSVC2 32 SVs
\\ Structural variants from 32 haplotype-resolved diploid genomes (HGSVC2\ freeze 4, Ebert et al. 2021). ~112k SVs (deletions, insertions and\ inversions) called from phased de novo assemblies with PAV, with\ per-variant 1000 Genomes population allele frequencies (insertions and\ deletions) and rich structural/gene annotations. An earlier HGSVC release\ complementary to HGSVC3.\
\ \HGSVC3 65 SVs
\\ Structural variants from 65 diverse individuals sequenced and de novo\ assembled by the Human Genome Structural Variation Consortium phase 3\ (HGSVC3). ~177k haplotype-resolved SVs (deletions, insertions and\ inversions) called with PAV and cross-validated with ten additional callers,\ with per-site carrier haplotype lists and structural annotations.\
\ \Arab APR 53 SVs
\\ Structural variants from the Arab Pangenome Reference (APR), a\ haplotype-resolved pangenome graph built from 53 UAE-resident Arab individuals\ drawn from eight countries (PacBio HiFi + ultralong ONT + Hi-C; Nassir et al.\ 2025). ~73k SVs on hg38 (deletions, insertions, complex and mixed snarls),\ lifted from the native T2T-CHM13 assembly; the hs1 track uses the native\ coordinates.\
\ \CPC 58 SVs
\\ Structural variants from the Chinese Pangenome Consortium (CPC), 58 samples\ spanning 36 minority ethnic groups (PacBio HiFi pangenome graph; Gao et al.\ 2023). This track shows the CPC contribution to the joint CPC+HPRC graph with\ HPRC-specific SVs removed. ~36k SVs on hg38 (deletions, insertions and mixed\ snarls), lifted from the native T2T-CHM13 assembly; the hs1 track is native.\
\ \SVatalog 101 SVs
\\ Structural variants from 101 long-read whole-genome sequences released\ alongside the GWAS SVatalog tool (Chirmade et al. 2026). The samples come\ from the CF Canada-Sick Kids Program in Individual CF Therapy (CFIT), a\ cystic-fibrosis (CF) patient cohort assembled to model patient-specific\ responses to CFTR modulator therapies (most participants are F508del\ homozygotes or F508del / minimal-function compound heterozygotes; a smaller\ number carry rare nonsense or missense CFTR mutations). ~87k SVs\ (deletions, insertions, duplications, inversions and complex events)\ annotated with gene overlaps, ClinGen / gnomAD constraint scores,\ OMIM / ClinVar / DGV / Decipher regional annotations.\
\ \ \Data Access
\\ Each subtrack has its own documentation page with details on how to download\ and intersect the underlying annotations. The build process for all subtracks\ is recorded in the UCSC makeDoc,\ doc/hg38/lrSv.txt\ (and doc/hs1/lrSv.txt\ for T2T-CHM13); the conversion scripts are in\ makeDb/scripts/lrSv,\ and the track configuration is in\ trackDb/human/lrSv.ra.\
\ \References
\ \\
Gong J, Sun H, Wang K, Zhao Y, Huang Y, Chen Q, Qiao H, Gao Y, Zhao J, Ling Y et al.\
\
Long-read sequencing of 945 Han individuals identifies structural variants associated with\
phenotypic diversity and disease susceptibility.\
Nat Commun. 2025 Feb 10;16(1):1494.\
PMID: 39929826; PMC:
\
Schloissnig S, Pani S, Ebler J, Hain C, Tsapalou V, Söylev A, Hüther P, Ashraf H, Prodanov T,\
Asparuhova M et al.\
\
Structural variation in 1,019 diverse humans based on long-read sequencing.\
Nature. 2025 Aug;644(8076):442-452.\
PMID: 40702182; PMC:
\
Otsuki A, Okamura Y, Ishida N, Tadaka S, Takayama J, Kumada K, Kawashima J, Taguchi K, Minegishi N,\
Kuriyama S et al.\
\
Construction of a trio-based structural variation panel utilizing activated T lymphocytes and long-\
read sequencing technology.\
Commun Biol. 2022 Sep 20;5(1):991.\
PMID: 36127505; PMC:
\
Garimella KV, Li Q, Wertz J, Lee SK, Cunial F, Huang Y, Mostovoy Y, Lorig-Roach R, English A, Su H\
et al.\
\
Population-scale Long-read Sequencing in the All of Us Research Program.\
medRxiv. 2025 Oct 5;.\
PMID: 41256123; PMC:
\ Cohen ASA, Farrow EG, Abdelmoity AT, Alaimo JT, Amudhavalli SM, Anderson JT, Bansal L, Bartik L,\ Baybayan P, Belden B et al.\ \ Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes.\ Genet Med. 2022 Jun;24(6):1336-1348.\ PMID: 35305867\
\ \ \ \\ Beyter D, Ingimundardottir H, Oddsson A, Eggertsson HP, Bjornsson E, Jonsson H, Atlason BA,\ Kristmundsdottir S, Mehringer S, Hardarson MT et al.\ \ Long-read sequencing of 3,622 Icelanders provides insight into the role of structural variants in\ human diseases and other traits.\ Nat Genet. 2021 Jun;53(6):779-786.\ PMID: 33972781\
\ \ \ \\
Logsdon GA, Ebert P, Audano PA, Loftus M, Porubsky D, Ebler J, Yilmaz F, Hallast P, Prodanov T, Yoo\
D et al.\
\
Complex genetic variation in nearly complete human genomes.\
Nature. 2025 Aug;644(8076):430-441.\
PMID: 40702183; PMC:
\
Chirmade S, Wang Z, Mastromatteo S, Sanders E, Thiruvahindrapuram B, Nalpathamkalam T, Pellecchia G,\
Lin F, Keenan K, Patel RV et al.\
\
GWAS SVatalog: a visualization tool to aid fine-mapping of GWAS loci with structural variations.\
Heredity (Edinb). 2026 Mar;135(3):199-210.\
PMID: 41203876; PMC:
\
Gustafson JA, Gibson SB, Damaraju N, Zalusky MPG, Hoekzema K, Twesigomwe D, Yang L, Snead AA,\
Richmond PA, De Coster W et al.\
\
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive\
catalog of human genetic variation.\
Genome Res. 2024 Nov 20;34(11):2061-2073.\
PMID: 39358015; PMC:
\
Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W,\
Serra Mari R et al.\
\
Haplotype-resolved diverse human genomes and integrated analysis of structural variation.\
Science. 2021 Apr 2;372(6537).\
PMID: 33632895; PMC:
\
Byrska-Bishop M, Evani US, Zhao X, Basile AO, Abel HJ, Regier AA, Corvelo A, Clarke WE, Musunuri R,\
Nagulapalli K et al.\
\
High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602\
trios.\
Cell. 2022 Sep 1;185(18):3426-3440.e19.\
PMID: 36055201; PMC:
Description
\\ This collection is for long-read RNA-seq transcript models and primary data\ generated from experiments using third-generation sequencing technology\ (PacBio and Oxford Nanopore). The initial set is long-read models from\ ENCODE4 PacBio Iso-Seq experiments. More data sets will be added to this\ collection in the future.\
\ rna 0 group rna\ longLabel Transcripts and other data generated using long-read sequencing technology (PacBio and Oxford Nanopore)\ shortLabel Long-read Transcripts\ superTrack on\ track long_read_transcripts\ lovdComp LOVD Variants bigBed 4 + LOVD: Leiden Open Variation Database Public Variants 0 100 0 0 0 127 127 127 0 0 0Description
\ \\
\
\
NOTE:
\
LOVD is intended for use primarily by physicians and other\
professionals concerned with genetic disorders, by genetics researchers, and\
by advanced students in science and medicine. While the LOVD database is\
open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions. Further, please be\
sure to visit the LOVD web site for the very latest, as they are continually \
updating data.
DOWNLOADS:
\
LOVD databases are owned by their respective curators\
and are not available for download or mirroring \
by any third party without their permission. Batch queries on this track are only available via the\
UCSC Beacon API (see below). See also the\
LOVD web site\
for a list of database installations and the respective curators.
\
This track shows the genomic positions of all public entries in public\
installations of the Leiden Open Variation Database system (
\ Since Apr 2020, similar to the ClinVar track, the data is split into two subtracks, for variants\ with a length of < 50 bp and >= 50 bp, respectively.\
\ \\ LOVD is a flexible, freely-available tool for gene-centered collection and\ display of DNA variations. It is not a database itself, but rather a platform\ where curators store and analyze data. While the LOVD team and the biggest LOVD\ sites are run at the Leiden University Medical Center, LOVD installations and their\ curators are spread over the whole world. Most LOVD databases report at least \ some of their content back to Leiden to allow global cross-database search, which\ is, among others, exported to this UCSC Genome Browser track every month.\
\\ A few LOVD databases are entirely missing from this track. Reasons include configuration issues and\ intentionally blocked data search. During the last check in November 2019, the following databases\ did not export any variants:\
- \
- \ https://databases.lovd.nl/shared/genes/LDLR \
- \ http://sysbio.org.cn/ \
- \ https://ab-openlab.csir.res.in/mitolsdb/ \
Batch queries
\The LOVD data is not available for download or for batch queries in the Table Browser. \ However, it is available for programmatic access via the Global\ Alliance Beacon API, a web service that accepts queries in the form\ (genome, chromosome, position, allele) and returns "true" or "false" depending\ on whether there is information about this allele in the database. For more details see our \ Beacon Server.
\ \\ To find all LOVD databases that contain variants of a given gene, you can get a list of databases by\ constructing a url in the format geneSymbol.lovd.nl, for example,\ tp53.lovd.nl. You can\ then use the LOVD API to retrieve more detailed information from a particular database. See the\ LOVD FAQ.
\ \Display Conventions and Configuration
\ \\
Genomic locations of LOVD variation entries are labeled with the gene symbol\
and the description of the mutation according to
\ Since October 2017, the functional effect for variants is shown on the details page, if annotated.\ The possible values are:\
- \
- notClassified \
- functionAffected \
- notThisDisease \
- notAnyDisease \
- functionProbablyAffected \
- functionProbablyNotAffected \
- functionNotAffected \
- unknown \
\ All other information is shown on the respective LOVD variation page, accessible via the\ "Link to LOVD" above.\
\ \Methods
\ \\ The mappings displayed in this track were provided by LOVD.\
\ \Credits
\ \\ Thanks to the LOVD team, Ivo Fokkema, Peter Taschner, Johan den Dunnen, and all LOVD curators who\ gave permission to show their data.
\ \References
\ \\ Fokkema IF, Taschner PE, Schaafsma GC, Celli J, Laros JF, den Dunnen JT.\ \ LOVD v.2.0: the next generation in gene variant databases.\ Hum Mutat. 2011 May;32(5):557-63.\ PMID: 21520333\
\ phenDis 1 compositeTrack on\ group phenDis\ html lovdComp\ longLabel LOVD: Leiden Open Variation Database Public Variants\ shortLabel LOVD Variants\ tableBrowser off lovdComp\ track lovdComp\ type bigBed 4 +\ visibility hide\ lrg LRG Regions bigBed 12 + Locus Reference Genomic (LRG) / RefSeqGene Sequences Mapped to Dec. 2013 (GRCh38/hg38) Assembly 0 100 72 167 38 163 211 146 0 0 0 http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xmlDescription
\\ Locus Reference Genomic (LRG)\ sequences are manually curated, stable DNA sequences that surround a\ locus (typically a gene) and provide an unchanging coordinate system\ for reporting sequence variants. They are not necessarily identical\ to the corresponding sequence in a particular reference genome\ assembly (such as Dec. 2013 (GRCh38/hg38)), but can be mapped to each version of a\ reference genome assembly in order to convert between the stable LRG\ variant coordinates and the various assembly coordinates.\
\ \\ We import the data from the LRG database at the EBI. \ The NCBI RefSeqGene database is almost identical to LRG, \ but it may contain a few more sequences. See the NCBI documentation.\
\ \\ Each LRG record also includes at least one stable transcript\ on which variants may be reported. These transcripts\ appear in the LRG Transcripts track in the Gene and Gene Predictions\ track section.
\ \Methods
\\ LRG sequences are suggested by the community studying a locus (for example,\ Locus-Specific Database curators, research laboratories, mutation consortia).\ LRG curators then examine the submitted transcript as well as other known\ transcripts at the locus, in the context of alignment and public expression\ data.\ For more information on the selection and annotation process, see the \ LRG FAQ,\ (Dalgleish, et al.) and (MacArthur, et al.).\
\ \Credits
\\ This track was produced at UCSC using\ LRG XML files.\ Thanks to\ LRG collaborators\ for making these data available.\
\ \References
\\
Dalgleish R, Flicek P, Cunningham F, Astashyn A, Tully RE, Proctor G, Chen Y, McLaren WM, Larsson P,\
Vaughan BW et al.\
\
Locus Reference Genomic sequences: an improved basis for describing human DNA variants.\
Genome Med. 2010 Apr 15;2(4):24.\
PMID: 20398331; PMC:
\
MacArthur JA, Morales J, Tully RE, Astashyn A, Gil L, Bruford EA, Larsson P, Flicek P, Dalgleish R,\
Maglott DR et al.\
\
Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence\
variants.\
Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8.\
PMID: 24285302; PMC:
Description
\\ This track shows the fixed (unchanging) transcript(s) associated with\ each \ Locus Reference Genomic (LRG) sequence.\ LRG\ sequences are manually curated, stable DNA sequences that surround a\ locus (typically a gene) and provide an unchanging coordinate system\ for reporting sequence variants. They are not necessarily identical\ to the corresponding sequence in a particular reference genome\ assembly (such as Dec. 2013 (GRCh38/hg38)), but can be mapped to each version of a\ reference genome assembly in order to convert between the stable LRG\ variant coordinates and the various assembly coordinates.\
\\ We import the data from the LRG database at the EBI. \ The NCBI RefSeqGene database is almost identical to LRG, \ but it may contain a few more sequences. See the NCBI documentation.\
\ \\ The LRG Regions track, in the Mapping and Sequencing Tracks section,\ includes more information about the LRG including the HGNC gene symbol\ for the gene at that locus, source of the LRG sequence, and summary of\ differences between LRG sequence and the genome assembly.\
\ \Methods
\\ LRG sequences are suggested by the community studying a locus (for example,\ Locus-Specific Database curators, research laboratories, mutation consortia).\ LRG curators then examine the submitted transcript as well as other known\ transcripts at the locus, in the context of alignment and public expression\ data.\ For more information on the selection and annotation process, see the \ LRG FAQ,\ (Dalgleish, et al.) and (MacArthur, et al.).\
\ \Credits
\\ This track was produced at UCSC using\ LRG XML files.\ Thanks to\ LRG\ collaborators for making these data available.\
\ \References
\\
Dalgleish R, Flicek P, Cunningham F, Astashyn A, Tully RE, Proctor G, Chen Y, McLaren WM, Larsson P,\
Vaughan BW et al.\
\
Locus Reference Genomic sequences: an improved basis for describing human DNA variants.\
Genome Med. 2010 Apr 15;2(4):24.\
PMID: 20398331; PMC:
\
MacArthur JA, Morales J, Tully RE, Astashyn A, Gil L, Bruford EA, Larsson P, Flicek P, Dalgleish R,\
Maglott DR et al.\
\
Locus Reference Genomic: reference sequences for the reporting of clinically relevant sequence\
variants.\
Nucleic Acids Res. 2014 Jan;42(Database issue):D873-8.\
PMID: 24285302; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\
This track displays data from
\ This track collection contains 19 bar chart tracks of RNA expression in the human lung where cells \ are grouped such as by cell type (Lung Cells, \ Lung Cells FACS), tissue compartments \ (Lung Compart, \ Lung Compart FACS), \ detailed cell type (Lung Detail, \ Lung Detail FACS), \ organ donor (Lung Donor, \ Lung Donor FACS), halfway detailed cell type \ (Lung Half Det, \ Lung Half Det FACS), \ sample location (Lung Locat, \ Lung Locat FACS), or organ \ (Lung Organ, \ Lung Organ FACS). \ The default track displayed is Lung Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial |
\
Cells that fall into multiple classes will be colored by blending the colors\
associated with those classes. The colors will be purest in the
Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
Method
\\ Healthy lung tissue and peripheral blood was surgically removed from 2 male\ patients (ages 46 and 75) and 1 female patient (age 51) undergoing lobectomy\ for focal lung tumors. Lung tissue was sampled from the bronchi (proximal),\ bronchiole (medial), and alveolar (distal) regions. Lung samples were\ dissociated and enriched with magnetic columns before being sorted into\ epithelial, endothelial/immune, and stromal cell suspensions. Lung and\ peripheral blood libraries were prepared using the 10x Genomics 3' v2 kit. In\ parallel, Smart-Seq2 (SS2) cDNA libraries were prepared using the Nextera XT\ library kit. Both 10x and SS2 libraries were sequenced on a NovaSeq 6000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Kyle J. Travaglini, Ahmad N. Nabhan, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
Description
\\ The Matched Annotation from\ NCBI and EMBL-EBI (MANE) project aims to produce a matched set of \ high-confidence transcripts that are identically annotated between RefSeq (NCBI) and \ Ensembl/GENCODE (led by EMBL-EBI). Transcripts for MANE are chosen by a combination of \ automated and manual methods based on conservation, expression levels, clinical significance, \ and other factors. Transcripts are matched between the NCBI RefSeq and Ensembl/GENCODE annotations\ based on the GRCh38 genome assembly, with precise 5' and 3' ends defined by high-throughput\ sequencing or other available data.
\\ This track is automatically updated, see the source data version above for the current\ version number. MANE includes almost all human protein-coding genes and genes of clinical relevance,\ including genes in the\ American\ College of Medical Genetics and Genomics (ACMG) Secondary Findings list (SF) v3.0. It includes \ both MANE Select and MANE Plus Clinical transcripts. MANE\ Plus Clinical items are colored red.\
\ For more information on the different gene tracks, including MANE vs GENCODE or RefSeq,\ see our Genes FAQ.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For computational analysis, genome annotations are stored in\ a bigGenePred file that can be downloaded from the\ download\ server. Regional or genome-wide annotations can be converted from binary data to human readable\ text using our command line utility bigBedToBed which can be compiled from source code or\ downloaded as a precompiled binary for your system. Files and instructions can be found in the\ utilities directory.\ \ The utility can be used to obtain features within a given range, for example:
\bigBedToBed -chrom=chr6 -start=0 -end=1000000 http://hgdownload.soe.ucsc.edu/gbdb/hg38/mane/mane.bb stdout\
\
\ Download links for MANE:\ ftp://ftp.ncbi.nlm.nih.gov/refseq/MANE\
\ \\ Previous MANE versions are also available on our download archive.
\ \\ Please refer to our Data Access FAQ\ for more information or our mailing list for archived user questions.
\ \Credits
\\ Thank you to the RefSeq project at NCBI and the Ensembl/GENCODE project at EMBL-EBI.\ You can contact the authors directly at \ MANE-help@ncbi.nlm.nih.gov\ or \ mane-help@ebi.ac.uk.
\ \References
\\
Morales J, Pujar S, Loveland JE, Astashyn A, Bennett R, Berry A, Cox E, Davidson C, Ermolaeva O,\
Farrell CM et al.\
\
A joint NCBI and EMBL-EBI transcript set for clinical genomics and research.\
Nature. 2022 Apr;604(7905):310-315.\
PMID: 35388217; PMC:
Description
\\ These tracks indicate regions with uniquely mappable reads of particular lengths before and after\ bisulfite conversion. Both Umap and Bismap tracks contain single-read mappability and multi-read\ mappability tracks for four different read lengths: 24 bp, 36 bp, 50 bp, and 100 bp.
\\ You can use these tracks for many purposes, including filtering unreliable signal from\ sequencing assays. The Bismap track can help filter unreliable signal from sequencing assays\ involving bisulfite conversion, such as whole-genome bisulfite sequencing or reduced representation\ bisulfite sequencing.
\ \ \Bismap single-read and multi-read mappability
\- \
- Bismap single-read mappability \
- \
These tracks mark any region of the bisulfite-converted genome that is uniquely mappable by\ at least one k-mer on the specified strand. Mappability of the forward strand was\ generated by converting all instances of cytosine to thymine. Similarly, mappability of the\ reverse strand was generated by converting all instances of guanine to adenine.
\To calculate the single-read mappability, you must find the overlap of a given region with\ the region that is uniquely mappable on both strands. Regions not uniquely mappable on both\ strands or have a low multi-read mappability might bias the downstream analysis.
\
- Bismap multi-read mappability \
- \
These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable. Multi-read mappability track is calculated for\ k-mers that are uniquely mappable on both strands, and thus there is no strand\ specification.
\
Umap single-read and multi-read mappability
\- \
- Umap single-read mappability \
- \
These tracks mark any region of the genome that is uniquely mappable by at least one\ k-mer. To calculate the single-read mappability, you must find the overlap of a given\ region with this track.
\
- Umap multi-read mappability \
- \
These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable.
\
For greater detail and explanatory diagrams, see the\ preprint, the\ Umap and Bismap project website, or the\ Umap and Bismap software\ documentation.\ \
Data Access
\\ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, genome annotation is stored in a bigBed\ or bigWig file that can be downloaded from the\ download\ server. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed or bigWigToWig, which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found here.\ The tool can also be used to obtain only features within a given range, for example:
\ bigBedToBed -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb stdout\\ bigWigToWig -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ stdout\
\ Please refer to our mailing list archives for questions, or our\ Data Access FAQ for more\ information.
\ \Credits
\\ Anshul Kundaje (Stanford\ University) created the original Umap software in MATLAB. The original Umap repository is available\ here.\ Mehran Karimzadeh (Michael Hoffman\ lab, Princess Margaret Cancer Centre) implemented the Python version of Umap and added features,\ including Bismap.
\ \References
\\ Karimzadeh M, Ernst C, Kundaje A, Hoffman MM.,\ Umap and Bismap:\ quantifying genome and methylome mappability\ bioRxiv bioRxiv, p. 095463, 2016.; doi: https://doi.org/10.1101/095463.
\ map 0 group map\ longLabel Hoffman Lab Umap and Bismap Mappability\ shortLabel Mappability\ superTrack on\ track mappability\ mavedb MaveDB Experiments bigBed 12 + Heatmaps and Alignment for MaveDB 0 100 0 0 0 127 127 127 0 0 0Description
\\ This supertrack provides heatmaps of multiplexed assays of variant effects (MAVE) from\ MaveDB. Each heatmap presents the results of an\ experiment where many small substitutions were tested within a gene to examine their\ functional consequences. Accompanying tracks display alignments of each experiment sequence\ to the genome.\
\Data Access
\\ Direct access to the data files for these experiments can be obtained from\ MaveDB.\
\References
\\
Rubin AF, Stone J, Bianchi AH, Capodanno BJ, Da EY, Dias M, Esposito D, Frazer J, Fu Y, Grindstaff\
SB et al.\
\
MaveDB 2024: a curated community database with over seven million variant effects from multiplexed\
functional assays.\
Genome Biol. 2025 Jan 21;26(1):13.\
PMID: 39838450; PMC:
Description
\ \\ This track displays 664,558 unique small open reading frames (sORFs) in the human\ genome from MetamORF, a\ meta-database that consolidates sORF data identified by both experimental and computational\ approaches. sORFs are defined as ORFs encoding fewer than 100 amino acids (excluding stop\ codons and introns).\
\ \\ MetamORF was built by gathering publicly available sORF data from multiple sources,\ normalizing it, and removing redundancy. From 2,594,154 source ORFs across human and mouse,\ MetamORF identified 1,162,675 unique ORFs (664,771 human, 497,904 mouse) associated with\ 153,553 unique transcripts. The database enables comparison of sORFs across distinct original\ data sources at the ORF, transcript, and gene levels. For full documentation, see the\ MetamORF documentation page.\
\ \Data Sources
\ \\ The human sORFs in MetamORF were compiled from seven primary data sources and 46 individual\ ribosome profiling datasets from\ sORFs.org.\ The primary sources are:\
\ \| Source | \Description | \Reference | \
|---|---|---|
| Erhard et al. 2018 | \Union of ORFs detected by PRICE, RP-BP, ORF-RATER, or annotated in Ensembl v75 | \Nat Methods 2018 | \
| Johnstone et al. 2016 | \Location and translation data for analyzed transcripts and ORFs | \EMBO J 2016 | \
| Laumont et al. 2016 | \Cryptic MAPs (minor ORF-encoded peptides) with genomic and proteomic features | \Nat Commun 2016 | \
| Mackowiak et al. 2015 | \Systematic identification of sORFs across vertebrate genomes | \Genome Biol 2015 | \
| Samandi et al. 2017 | \Alternative protein predictions based on RefSeq GRCh38 | \eLife 2017 | \
| sORFs.org | \Repository of sORFs from 46 individual ribosome profiling experiments | \Olexiouk et al., Nucleic Acids Res 2018 | \
\ ORFs were identified using three main approaches: bioinformatic predictions, ribosome profiling\ experiments, and mass spectrometry (proteomics, peptidomics, and proteogenomics).\
\ \ORF Classification
\ \\ MetamORF classifies ORFs by their position relative to annotated coding sequences:\
\- \
- Upstream – located in the 5' UTR, upstream of the main CDS \
- Downstream – located in the 3' UTR, downstream of the main CDS \
- Overlapping – overlapping with the annotated CDS \
- Intronic – located within an intron \
- InCDS / CDS / NewCDS – within or coinciding with a coding sequence \
- Alternative – in a different reading frame than the annotated CDS start \
- Opposite – on the opposite strand from the transcript \
\ ORFs are also classified by the biotype of their host RNA: intergenic, ncRNA, pseudogene,\ NMD (nonsense-mediated decay), or readthrough transcripts.\
\ \Display Conventions and Configuration
\ \\ Items are displayed in bigGenePred format. Each item is labeled with its MetamORF ORF\ ID. Color reflects the categorical Kozak consensus strength:\
\\
Strong – A/G at position −3 and G at position +4
\
Moderate – only one of those positions matches
\
Weak – neither position matches
\
non-ATG – near-cognate start codon; the Kozak rule does not apply
\
no context – chromosome edge or context unavailable\
\ Mouseover shows the ORF ID, ORF annotation, start codon, Kozak strength and TE,\ host transcripts, and the cell types where the ORF was reported.\
\ \Available filters: start codon, Kozak strength, Kozak TE.
\ \Data Access
\ \\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. The data can be accessed from\ scripts through our API; the track name is\ "metamorf".\
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncOrfs/metamorf/MetamORF.kozak.bb -chrom=chr21 -start=0 -end=100000000 stdout\ \\ The original data and additional downloads are available from the\ MetamORF website.\ Source code is available on\ GitHub.\
\ \Methods
\ \\ The MetamORF BED 12 data was obtained from the MetamORF\ track hub\ and converted to bigBed format at UCSC. Coordinates are on the GRCh38/hg38 assembly\ (based on Ensembl release 90).\
\ \Credits
\ \\ Thanks to the MetamORF team at the TAGC (Theories and Approaches of Genomic Complexity)\ laboratory, Aix-Marseille University, for creating this resource and making it publicly\ available.\
\ \References
\ \\
Erhard F, Halenius A, Zimmermann C, L'Hernault A, Kowalewski DJ, Weekes MP, Stevanovic S,\
Zimmer R, Dölken L.\
\
Improved Ribo-seq enables identification of cryptic translation events.\
Nat Methods. 2018 May;15(5):363-366.\
PMID: 29529017; PMC:
\
Johnstone TG, Bazzini AA, Giraldez AJ.\
\
Upstream ORFs are prevalent translational repressors in vertebrates.\
EMBO J. 2016 Apr 1;35(7):706-23.\
PMID: 26896445; PMC:
\
Laumont CM, Daouda T, Laverdure JP, Bonneil É, Caron-Lizotte O, Hardy MP, Granados DP, Durette C,\
Lemieux S, Thibault P et al.\
\
Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical\
reading frames.\
Nat Commun. 2016 Jan 5;7:10238.\
PMID: 26728094; PMC:
\
Mackowiak SD, Zauber H, Bielow C, Thiel D, Kutz K, Calviello L, Mastrobuoni G, Rajewsky N, Kempa S,\
Selbach M et al.\
\
Extensive identification and analysis of conserved small ORFs in animals.\
Genome Biol. 2015 Sep 14;16:179.\
PMID: 26364619; PMC:
\
Olexiouk V, Van Criekinge W, Menschaert G.\
\
An update on sORFs.org: a repository of small ORFs identified by ribosome profiling.\
Nucleic Acids Res. 2018 Jan 4;46(D1):D497-D502.\
PMID: 29140531; PMC:
\
Samandi S, Roy AV, Delcourt V, Lucier JF, Gagnon J, Beaudoin MC, Vanderperre B, Breton MA, Motard J,\
Jacques JF et al.\
\
Deep transcriptome annotation enables the discovery and functional characterization of cryptic small\
proteins.\
Elife. 2017 Oct 30;6.\
PMID: 29083303; PMC:
Start codon: $startCodon
Kozak: $kozakStrength (TE $kozakTE)
Transcripts: $transcripts
Cell types: $cell_types\ parent ncOrfs\ shortLabel MetamORF\ track metamorf\ type bigGenePred\ visibility pack\ mgcFullMrna MGC Genes psl Mammalian Gene Collection Full ORF mRNAs 3 100 0 100 0 127 177 127 0 0 0
Description
\ \\ This track show alignments of human mRNAs from the\ Mammalian Gene Collection\ (MGC) having full-length open reading frames (ORFs) to the genome.\ The goal of the Mammalian Gene Collection is to provide researchers with\ unrestricted access to sequence-validated full-length protein-coding cDNA\ clones for human, mouse, rat, xenopus, and zerbrafish genes.\
\ \Display Conventions and Configuration
\ \\ The track follows the display conventions for\ gene prediction\ tracks.\
\ \\ An optional codon coloring feature is available for quick\ validation and comparison of gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information\ about this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\
\ \Methods
\ \\ GenBank human MGC mRNAs identified as having full-length ORFs\ were aligned against the genome using blat. When a single mRNA\ aligned in multiple places, the alignment having the highest base identity was\ found. Only alignments having a base identity level within 1% of\ the best and at least 95% base identity with the genomic sequence\ were kept.\
\ \Credits
\ \\ The human MGC full-length mRNA track was produced at UCSC from\ mRNA sequence data submitted to\ \ GenBank by the Mammalian Gene Collection project.\
\ \References
\ \\ Mammalian Gene Collection project\ references.\
\ \\
Kent WJ.\
\
BLAT--the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
Description
\ \\ These tracks show alignments of human mRNAs from the\ Mammalian Gene Collection\ (MGC) and ORFeome Collaboration having full-length open reading frames (ORFs) to the genome.\ The goal of the Mammalian Gene Collection is to provide researchers with\ unrestricted access to sequence-validated full-length protein-coding cDNA\ clones for human, mouse, and rat genes. The ORFeome project extended MGC to\ provide additional human, mouse, and zebrafish clones.\
\ \Display Conventions and Configuration
\ \\ The track follows the display conventions for\ gene prediction\ tracks.\
\ \\ An optional codon coloring feature is available for quick\ validation and comparison of gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information\ about this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\
\ \Methods
\ \\ GenBank human MGC mRNAs identified as having full-length ORFs\ were aligned against the genome using blat. When a single mRNA\ aligned in multiple places, the alignment having the highest base identity was\ found. Only alignments having a base identity level within 1% of\ the best and at least 95% base identity with the genomic sequence\ were kept.\
\ \Credits
\ \\ The human MGC full-length mRNA track was produced at UCSC from\ mRNA sequence data submitted to\ \ GenBank by the Mammalian Gene Collection project.\
\ \\ Visit the ORFeome Collaboration\ members page for a list of credits and references.\
\ \References
\ \\ Mammalian Gene Collection project\ references.\
\ \\
Kent WJ.\
\
BLAT--the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
Description
\\ The Human miRNA Tissue Atlas is a\ catalog of tissue-specific microRNA (miRNA) expression across 62 tissues. This track contains\ quantile normalized miRNA expression data sampled from two individuals and mapped to\ miRBase v21 coordinates. The track contains two subtracks, one\ for each individual sampled.
\ \\ The Tissue Specificity Index (TSI) is analogous to the "tau" value for mRNA expression,\ and is calculated as described in the\ \ associated publication. Values closer to 0 indicate miRNAs expressed in many or all tissues,\ while values closer to 1 indicate miRNAs expressed only in a specific tissue or tissues. To\ browse miRNAs by TSI value, please see the\ miRNA Tissue Atlas.
\ \Display Conventions and Configuration
\\ This track is formatted as a barChart track,\ similar to the GTEx or the\ TCGA Cancer Expression tracks, where the\ heights of each bar indicate the expression value for the miRNA in a specific tissue. The tissues\ sampled are described in the table below:\
\| Bar Color | Sample 1 | Sample 2 |
| Adipocyte | Adipocyte | |
| Artery | Artery | |
| Colon | Colon | |
| Dura mater | Dura mater | |
| Kidney | Kidney | |
| Liver | Liver | |
| Lung | Lung | |
| Muscle | Muscle | |
| Myocardium | Myocardium | |
| Skin | Skin | |
| Spleen | Spleen | |
| Stomach | Stomach | |
| Testis | Testis | |
| Thyroid | Thyroid | |
| Small intestine | ||
| Bone | ||
| Gallbladder | ||
| Fascia | ||
| Bladder | ||
| Epididymis | ||
| Tunica albuginea | ||
| Nervus intercostalis | ||
| Arachnoid mater | ||
| Brain | ||
| Small intestine duodenum | ||
| Small intestine jejunum | ||
| Pancreas | ||
| Kidney glandula suprarenalis | ||
| Kidney cortex renalis | ||
| Esophagus | ||
| Prostate | ||
| Bone marrow | ||
| Vein | ||
| Lymph node | ||
| Nerve not specified | ||
| Pleura | ||
| Pituitary gland | ||
| Spinal cord | ||
| Thalamus | ||
| Brain white matter | ||
| Nucleus caudatus | ||
| Kidney medulla renalis | ||
| Brain gray_matter | ||
| Cerebral cortex temporal | ||
| Cerebral cortex frontal | ||
| Cerebral cortex occipital | ||
| Cerebellum |
\ The 14 shared tissues sampled across both individuals are presented in the same order for easier comparison.\
\ \Data Access
\\ The underlying expression matrix and TSI values can be obtained from the\ miRNA tissue atlas website, in the\ data_matrix_quantile.txt and tsi_quantile.csv files.\
\ \References
\\
Ludwig N, Leidinger P, Becker K, Backes C, Fehlmann T, Pallasch C, Rheinheimer S, Meder B,\
Stähler C, Meese E et al.\
\
Distribution of miRNA expression across human tissues.\
Nucleic Acids Res. 2016 May 5;44(8):3865-77.\
PMID: 26921406; PMC:
Description
\ \\
\
\
NOTE: MITOMAP data is available for\
\ chrM on hg38 and chrMT on hg19.
\
\ This track shows annotations from MITOMAP.\ MITOMAP is a database of human mitochondrial DNA (mtDNA) information containing\ a compilation of mtDNA variation. It allows users to look up human mitochondrial gene \ loci, search for public mitochondrial sequences, and browse or search for reported \ general population nucleotide variants as well as those reported in clinical disease.\
\\ The data in these tracks are automatically updated from MitoMap weekly.
\ \Display Conventions and Configuration
\\
These data are separated into two tracks:
\
MITOMAP Control and Coding Variants
\
This data track contains variants, including mini insertions and deletions, in the\
complete mtDNA. The item colors correspond to the variant type:\
control region vs.\
coding region.
\
MITOMAP Disease Mutations
\
This data track contains disease-annotated mutations (variants) in the\
complete mtDNA. The item colors correspond to the variant type:\
coding/control vs.\
rRNA/tRNA.
\ For both tracks, item names correspond to the\ variant nucleotide change, and mousing over features displays all available\ metadata for MITOMAP. Linkouts to the specific MITOMAP datasets are available from\ the item description pages, however, you must input the variant on MITOMAP.
\ \ Abbreviations and Definitions\- \
- FL: Full-length sequences \
- CR: Control region sequences \
Nucleotide changes are indicated as L-strand substitutions.
\- \
- MT-NC: Non-coding locus \
- syn: Synonymous mutation \
Variant Classification:
\- \
- B: Benign \
- LB: Likely Benign \
- VUS: Variant of Uncertain Significance \
- LP: Likely Pathogenic \
- P: Pathogenic \
Disease Associations:
\- \
- LHON: Leber Hereditary Optic Neuropathy \
- MM: Mitochondrial Myopathy \
- AD: Alzheimer's Disease \
- LIMM: Lethal Infantile Mitochondrial Myopathy \
- ADPD: Alzheimer's Disease and Parkinson's Disease \
- MMC: Maternal Myopathy and Cardiomyopathy \
- NARP: Neurogenic muscle weakness, Ataxia, and Retinitis Pigmentosa (alternate phenotype: Leigh Disease) \
- FICP: Fatal Infantile Cardiomyopathy Plus, a MELAS-associated cardiomyopathy \
- MELAS: Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like episodes \
- LDYT: Leber's Hereditary Optic Neuropathy and Dystonia \
- MERRF: Myoclonic Epilepsy and Ragged Red Muscle Fibers \
- MHCM: Maternally Inherited Hypertrophic Cardiomyopathy \
- CPEO: Chronic Progressive External Ophthalmoplegia \
- KSS: Kearns-Sayre Syndrome \
- DM: Diabetes Mellitus \
- DMDF: Diabetes Mellitus with Deafness \
- CIPO: Chronic Intestinal Pseudoobstruction with Myopathy and Ophthalmoplegia \
- DEAF: Maternally Inherited Deafness or Aminoglycoside-Induced Deafness \
- PEM: Progressive Encephalopathy \
- SNHL: Sensorineural Hearing Loss \
Mutation Terminology:
\- \
- Homoplasmy: Pure mutant mtDNAs \
- Heteroplasmy: Mixture of mutant and normal mtDNAs \
- nd: Not determined \
Mutation Status Definitions:
\- \
- Reported: Indicates that one or more publications suggest the mutation may be\ \ \ pathogenic. This is not an assignment of pathogenicity by MITOMAP but is a report\ \ \ of literature. Previously, mutations with this status were termed "Prov"\ \ \ (provisional). \
- Cfrm (Confirmed): Indicates that at least two or more independent\ \ \ laboratories have published reports on the pathogenicity of a specific mutation.\ \ \ These mutations are generally accepted by the mitochondrial research community as\ \ \ being pathogenic. A status of "Cfrm" is not an assignment of pathogenicity by\ \ \ MITOMAP but is a report of published literature. Researchers and clinicians are\ \ \ cautioned that additional data and/or analysis may still be necessary to confirm\ \ \ the pathological significance of some of these mutations. \
- P.M. (Point Mutation/Polymorphism): Indicates that some published reports have\ \ \ determined the mutation to be a non-pathogenic polymorphism. \
Methods
\\ MITOMAP collected the sequences from GenBank, aligned them to the rCRS using BLASTn, and\ haplotyped them with Haplogrep via the Mitomaster web service.
\\ The data were originally downloaded from the \ MITOMAP resource. For the Control and Coding Variants track, the following\ datasets were combined:\
\ And for the Disease Mutations track, the following two were combined:\ \\ These tracks have since been updated to automatically fetch files from the MitoMap server.\ For all the details on how the data are processed and combined, see\ the \ MITOMAP makedoc.\
\ \Data Access
\\ All source data can be found on the \ MITOMAP site.\
\ The MITOMAP data on the UCSC Genome Browser can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated download and analysis, the genome annotation is stored at UCSC in bigBed\ files that can be downloaded from the respective file, e.g.\ MITOMAP Variants, on our download server.\ The data may also be explored interactively using our\ REST API.
\ \\
The file for this track may also be locally explored using our tools bigBedToBed\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigBedToBed -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/mitoMapVars.bb stdout
Credits
\\ Thanks to Shiping Zhang and the entire MITOMAP resource\ for making these annotations available.
\ \References
\ \Lott MT, Leipzig JN, Derbeneva O, Xie HM, Chalkia D, Sarmady M, Procaccio V, Wallace DC.
Description
\\ Massively Parallel Reporter Assays (MPRAs) are high-throughput methods that\ measure the regulatory activity of thousands of candidate DNA sequences in\ parallel. Each fragment is cloned next to a reporter gene and tagged with a\ unique barcode; sequencing the resulting reporter RNA quantifies how strongly\ each fragment drives expression. Most assays place the candidate fragment\ upstream of the reporter to measure transcriptional activation; some place it\ in the 3' untranslated region instead, where the readout reflects post-\ transcriptional effects on mRNA stability, decay, or translation. When matched\ reference and mutated versions of a sequence are tested side-by-side, the\ effect of a genetic variant on regulatory activity can be measured directly.\
\ \\ This track collection brings together results from two MPRA databases, one for\ the complete sequence fragments and one for the impact of variants in selected\ fragments:\
\ \- \
- MPRA Base —\ 41,275 experimentally tested cis-regulatory elements curated from the MPRA Base\ database, which integrates MPRA, STARR-seq, and related reporter assay\ experiments across many cell types and conditions\ (Zhao et al., 2023).\ \
- MPRAVarDB —\ 239,028 variants mapped to hg38 (of 242,818 total) from 18 MPRA studies, tested\ for effects on transcriptional or post-transcriptional regulatory activity\ across over 30 cell lines and 30 human diseases and traits\ (Jin et al., 2024).\ \
\ Note on cell lines: The cell line shown for each element or variant is\ the reporter cell line in which the sequence was assayed. Most rows test human\ DNA in human cells. Several studies used mouse cell lines (Neuro-2a, N2A,\ NIH/3T3, MIN6) as reporter systems for human regulatory sequences. One MPRA\ Base study (Mattioli et al., 2020) tested mouse orthologous sequences\ in mouse embryonic stem cells (mESC); those items retain hg38 coordinates,\ derived from the orthologous human position by liftOver.\
\ \Data Access
\\ See the individual subtrack documentation pages linked above for detailed information\ on how to download and intersect the annotations.\
\ \Credits
\\ Thanks to Weijia Jin and colleagues at the University of Florida for\ MPRAVarDB,\ and to Varda Singhal and the\ Ahituv Lab\ at the University of California San Francisco for\ MPRA Base.\
\ \References
\ \\
Jin W, Xia Y, Nizomov J, Liu Y, Li Z, Lu Q, Chen L.\
\
MPRAVarDB: an online database and web server for exploring regulatory effects of genetic variants.\
Bioinformatics. 2024 Oct 1;40(10).\
PMID: 39325859; PMC:
\
Zhao J, Baltoumas FA, Konnaris MA, Mouratidis I, Liu Z, Sims J, Agarwal V, Pavlopoulos GA,\
Georgakopoulos-Soares I, Ahituv N.\
\
MPRAbase: A Massively Parallel Reporter Assay Database.\
bioRxiv. 2023 Nov 22;.\
PMID: 38045264; PMC:
Description
\\ This track shows multiple alignments of 90 human genomes generated by the Minigraph-Cactus\ pangenome pipeline, which creates pangenomes directly from whole-genome alignments. This method\ builds graphs containing all forms of genetic variation while allowing use of current mapping and\ genotyping tools.\
\ \Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ the conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. The following\ conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\ \Methods
\\ The MAF was obtained from the HPRC v1.0 minigraph-cactus HAL file (renamed\ to replace all "." characters in sample names with "#" using\ halRenameGenomes) using cactus v2.6.4 as follows.\
\ cactus-hal2maf ./js ./hprc-v1.0-mc-grch38.h\ al hprc-v1.0-mc-grch38.maf.gz --noAncestors --refGenome GRCh38\ --filterGapCausingDupes --chunkSize 100000 --batchCores 96 --batchCount 1\ 0 --noAncestors --batchParallelTaf 32 --batchSystem slurm --logFile\ hprc-v1.0-mc-grch38.maf.gz.log\ \ zcat hprc-v1.0-mc-grch38.maf.gz | mafDuplicateFilter -m - -k | bgzip >\ hprc-v1.0-mc-grch38-single-copy.maf.gz\ \ \
Credits
\\ Thank you to Glenn Hickey for providing the HAL file from the HPRC project.\
\ \References
\\
Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ et\
al.\
\
A draft human pangenome reference.\
Nature. 2023 May;617(7960):312-324.\
DOI: 10.1038/s41586-023-05896-x; PMID:
\
Hickey G, Monlong J, Ebler J, Novak AM, Eizenga JM, Gao Y, Human Pangenome Reference Consortium,\
Marschall T, Li H, Paten B.\
\
Pangenome graph construction from genome alignments with Minigraph-Cactus.\
Nat Biotechnol. 2023 May 10;.\
DOI: 10.1038/s41587-023-01793-w; PMID:
\
Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\
et al.\
\
Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\
Nature. 2020 Nov;587(7833):246-251.\
DOI: 10.1038/s41586-020-2871-y; PMID:
\
Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\
\
Cactus: Algorithms for genome multiple sequence alignment.\
Genome Res. 2011 Sep;21(9):1512-28.\
DOI: 10.1101/gr.123356.111;\
PMID: 21665927; PMC:
Description
\\
This track displays data from
\ This track collection contains two bar chart tracks of RNA expression in the\ human muscle where cells are grouped by cell type \ (Muscle Cells) or biosample\ (Muscle Sample). \ The default track displayed is \ Muscle Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| stem cell | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Muscle Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well. Note that the \ Muscle Sample subtrack is colored based on \ colors provided from Figure 1 from De Micheli et al., 2020.
\ \ \ \Relevant Figures From De Micheli et al. 2020
\ \\ Muscle tissue cell type populations.\ \
\
\
\
\
De Micheli et al. Skelet\
Muscle. 2020. / CC BY 4.0\
\
\
Method
\\ Muscle samples were taken from 10 healthy donors of ages ranging from 41-81\ years old from different sections of the face (F), trunk (T), and leg (L).\ Excessive fat and connective tissue were removed from the muscle samples prior\ to enzymatic dissociation. Next, libraries were prepared using the 10x Genomics\ 3' v2 or v3 library kit and sequenced on the Illumina NextSeq 500. This\ resulted in libraries with 200-250 million reads which were processed using Cell\ Ranger version 3.1. In total, over 22,000 RNA transcriptomic profiles were\ generated from all of the samples after quality control filtering. The single\ cell transcriptomes from all 10 datasets were integrated using a scRNA-seq\ integration method called Scanorama as described in the reference below.\ \
The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Andrea De Micheli of the Cosgrove Laboratory at Cornell University\ and to the many authors who worked on producing and publishing this data set. The\ data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed Luis Nassar. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\
\
A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\
muscle stem cell populations.\
Skelet Muscle. 2020 Jul 6;10(1):19.\
PMID: 32624006; PMC:
Description
\\
This track displays data from
\ This track collection contains two bar chart tracks of RNA expression in the\ human muscle where cells are grouped by cell type \ (Muscle Cells) or biosample\ (Muscle Sample). \ The default track displayed is \ Muscle Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| stem cell | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Muscle Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well. Note that the \ Muscle Sample subtrack is colored based on \ colors provided from Figure 1 from De Micheli et al., 2020.
\ \ \ \ \Method
\\ Muscle samples were taken from 10 healthy donors of ages ranging from 41-81\ years old from different sections of the face (F), trunk (T), and leg (L).\ Excessive fat and connective tissue were removed from the muscle samples prior\ to enzymatic dissociation. Next, libraries were prepared using the 10x Genomics\ 3' v2 or v3 library kit and sequenced on the Illumina NextSeq 500. This\ resulted in libraries with 200-250 million reads which were processed using Cell\ Ranger version 3.1. In total, over 22,000 RNA transcriptomic profiles were\ generated from all of the samples after quality control filtering. The single\ cell transcriptomes from all 10 datasets were integrated using a scRNA-seq\ integration method called Scanorama as described in the reference below.\ \
The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Andrea De Micheli of the Cosgrove Laboratory at Cornell University\ and to the many authors who worked on producing and publishing this data set. The\ data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed Luis Nassar. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\
\
A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\
muscle stem cell populations.\
Skelet Muscle. 2020 Jul 6;10(1):19.\
PMID: 32624006; PMC:
Description
\\
This track displays data from
\ This track collection contains two bar chart tracks of RNA expression in the\ human muscle where cells are grouped by cell type \ (Muscle Cells) or biosample\ (Muscle Sample). \ The default track displayed is \ Muscle Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| stem cell | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the \ Muscle Cells subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well. Note that the \ Muscle Sample subtrack is colored based on \ colors provided from Figure 1 from De Micheli et al., 2020.
\ \ \ \Relevant Figures From De Micheli et al. 2020
\ \\ Details on sex, age, anatomical site, and single-cell transcriptomes after\ quality control (QC) filtering from 10 donors. Colors represent areas from\ which samples were taken from.
\ \\
\
\
\
De Micheli et al. Skelet\
Muscle. 2020. / CC BY 4.0
\ \
\ Cell type proportions across the 10 donors and grouped by leg (donors 02, 07,\ 08), trunk (donors 01, 05, 06, 09, 10), and face (donors 03, 04).
\ \\
\
\
\
De Micheli et al. Skelet\
Muscle. 2020. / CC BY 4.0
Method
\\ Muscle samples were taken from 10 healthy donors of ages ranging from 41-81\ years old from different sections of the face (F), trunk (T), and leg (L).\ Excessive fat and connective tissue were removed from the muscle samples prior\ to enzymatic dissociation. Next, libraries were prepared using the 10x Genomics\ 3' v2 or v3 library kit and sequenced on the Illumina NextSeq 500. This\ resulted in libraries with 200-250 million reads which were processed using Cell\ Ranger version 3.1. In total, over 22,000 RNA transcriptomic profiles were\ generated from all of the samples after quality control filtering. The single\ cell transcriptomes from all 10 datasets were integrated using a scRNA-seq\ integration method called Scanorama as described in the reference below.\ \
The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Andrea De Micheli of the Cosgrove Laboratory at Cornell University\ and to the many authors who worked on producing and publishing this data set. The\ data were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick \ then reviewed Luis Nassar. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\
\
A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\
muscle stem cell populations.\
Skelet Muscle. 2020 Jul 6;10(1):19.\
PMID: 32624006; PMC:
Description
\ \\ The "Prediction Scores" container track contains subtracks showing the results of variant impact prediction\ scores. Usually these are prediction algorithms that use protein features, conservation, nucleotide composition and similar\ signals to determine if a genome variant is pathogenic or not.
\ \BayesDel - Only hg19
\BayesDel is a deleteriousness meta-score for coding and \ non-coding variants, single nucleotide\ variants, and small insertion/deletions. The range of the score is from -1.29334 to 0.75731.\ The higher the score, the more likely the variant is pathogenic.
\\ MaxAF stands for maximum allele frequency. The old ACMG (American College of Medical Genetics and\ Genomics) rules utilize allele frequency to classify variants, so the "BayesDel without MaxAF"\ tracks were created to avoid double-dipping. However, new ACMG rules will not include allele\ frequency, so it is okay to use the "BayesDel with MaxAF" for variant classification in the future.\ For gene discovery research, it is better to use BayesDel with MaxAF.
\\ For gene discovery research, a universal cutoff value (0.0692655 with MaxAF, -0.0570105 without\ MaxAF) was obtained by maximizing sensitivity and specificity in classifying ClinVar variants;\ Version 1 (build date 2017-08-24).
\\ For clinical variant classification, Bayesdel thresholds have been calculated for a variant to\ reach various levels of evidence; please refer to Pejaver et al. 2022 for general application\ of these scores in clinical applications.\
\ \M-CAP - Only hg19
\\ Interpretation: The authors define that at an M-CAP score > 0.025, 5% of \ pathogenic variants are misclassified as benign. 0.025 is the recommended cutoff.\
\ \\ The Mendelian Clinically Applicable Pathogenicity (M-CAP)\ score (Jagadeesh et al, Nat Genetics 2016) is a\ pathogenicity likelihood score that aims to misclassify no more than 5% of\ pathogenic variants while aggressively reducing the list of variants of\ uncertain significance. Much like allele frequency, M-CAP is readily\ interpreted; if it classifies a variant as benign, then that variant can be\ trusted to be benign with high confidence.
\ \\ At an M-CAP score > 0.025, 5% of pathogenic variants are misclassified as benign.\ The score varies from 0.0 - 1.0, following a geometric distribution with a mean of 0.09.\
\ \MutScore - hg38/hg19
\\ Interpretation: The authors defined the thresholds <0.140 for a variant\ to be benign, and > 0.730 for pathogenic with 95% confidence.
\\ The within-gene clustering of pathogenic and benign DNA changes is an important\ feature of the human exome.\ MutScore\ score (Quinodoz, AJHG 2022) integrates qualitative features of\ DNA substitutions with new additional information derived from \ positional clustering. Variants of unknown significance that are scored\ as benign by other algorithms but located close to known pathogenic variants\ should be weighted more pathogenic by MutScore. The score ranges from 0.0-1.0, resembles\ a negative binomial distribution with a maximum ~0.05, depending on the nucleotide.\ MutScore was seen to outperform other scores by papers Porretta et al and Brock et al.\
\ \PrimateAI-3D - hg38/hg19
\\ Interpretation: Scores range from 0 to 1, with higher values indicating greater\ predicted pathogenicity. The authors suggest a clinical threshold of 0.821 for distinguishing\ pathogenic from benign missense variants. 75% of all possible missense variants are classified\ as benign, 25% as pathogenic.\
\\ PrimateAI-3D\ (Gao et al, Science 2023) is a semi-supervised 3D convolutional neural network trained on\ 4.5 million benign missense variants from 233 primate species and common human variants.\ It operates on voxelized protein structures at 2 Å resolution (from AlphaFold or\ homology models) combined with multiple sequence alignments from 592 species. The track\ contains pre-computed scores for all 70.7 million possible single nucleotide missense\ variants.\ Pathogenic variants are shown in red,\ benign in blue.\ Items can be filtered by prediction and by percentile score.\
\ \PromoterAI - hg38
\\ Interpretation: Scores range from -1 to 1. Positive scores indicate predicted\ disruption of promoter function, negative scores indicate the variant is tolerated.\
\\ PromoterAI\ predicts the impact of single nucleotide variants in gene\ promoter regions, scoring all possible substitutions within 500 bp of annotated\ transcription start sites. The track contains four bigWig subtracks (one per alternate\ allele) covering 39.5 million positions, plus a bigBed track for the 3.8% of positions\ where overlapping transcripts produce different scores.\
\ \ClinPred - hg38/hg19
\\ Interpretation: Scores range from 0 to 1, with higher values indicating greater\ predicted likelihood of pathogenicity. The authors recommend a threshold of ≥ 0.5 to\ flag variants as likely disease-relevant.\
\\ ClinPred\ (Alirezaie et al, AJHG 2018) is a machine-learning predictor for nonsynonymous\ (missense) single-nucleotide variants. It combines existing pathogenicity scores\ with population allele frequency from gnomAD, and was trained on confidently\ annotated disease-causing and benign variants from ClinVar. The track contains\ four bigWig subtracks (one per alternate allele) with pre-computed scores for\ all possible human missense variants in the exome.\ Pathogenic variants are shown in red,\ benign in blue.\
\ \EVE - hg38
\\ Interpretation: EVE scores range from 0 (benign) to 1 (pathogenic) and are\ normalized within each protein, so they are not directly comparable across proteins. A\ Class25 label assigns each variant to benign, uncertain, or pathogenic using a 25%\ uncertainty threshold.\
\\ EVE\ (Frazer et al, Nature 2021) is a deep generative model (a Bayesian variational\ autoencoder) trained per protein on evolutionary sequence alignments, without using\ clinical labels. The track shows scores for all possible missense substitutions in\ 2,949 disease-associated proteins as a heatmap (rows = amino acids, columns = protein\ positions), colored from benign (blue) through\ uncertain (white) to pathogenic (red).\
\ \popEVE - hg38
\\ Interpretation: popEVE scores are a continuous, proteome-wide measure of\ deleteriousness and, unlike most missense scores, are calibrated to be comparable across\ genes; lower (more negative) scores are more deleterious. The authors define a\ high-confidence severe threshold at −5.056 and a moderate threshold at −4.617.\
\\ popEVE\ (Orenbuch et al, Nature Genetics 2025) builds on EVE and the ESM-1v protein language model,\ calibrating their scores against human population variation (UK Biobank) with a Gaussian\ process to place variants across the whole proteome on a single scale. The track shows\ scores for all single-nucleotide-reachable missense substitutions across roughly 18,000\ proteins as a heatmap, colored on a global gradient from\ deleterious (red) to\ tolerated (blue).\
\ \Display Conventions and Configuration
\ \BayesDel
\There are eight subtracks for the BayesDel track: four include pre-computed MaxAF-integrated BayesDel\ scores for missense variants, one for each base. The other four are of the same format, but scores\ are not MaxAF-integrated.
\ \For SNVs, at each genome position, there are three values per position, one for every possible\ nucleotide mutation. The fourth value, "no mutation", representing the reference allele,\ (e.g. A to A) is always set to zero.
\ \Note: There are cases in which a genomic position will have one value missing.\
\ \When using this track, zoom in until you can see every base pair at the top of the display.\ Otherwise, there are several nucleotides per pixel under your mouse cursor and instead of an actual\ score, the tooltip text will show the average score of all nucleotides under the cursor. This is\ indicated by the prefix "~" in the mouseover.\
\ \\
Details on suggested ranges for BayesDel can be found in Bergquist et al Genet Med 2025, Table 2:\
\
M-CAP and MutScore
\There are four subtracks: one for each nucleotide.
\ \ClinPred
\There are four subtracks: one for each alternate nucleotide. Each shows the\ ClinPred score for variants from the reference base to that nucleotide. Reference\ and synonymous alternates are set to 0; positions with no exome coverage appear as\ gaps. The track is colored at each position by the recommended threshold\ (≥ 0.5 = pathogenic, < 0.5 = benign).
\ \PrimateAI-3D
\A single bigBed track containing all possible missense variants. Items are\ colored by prediction (red = pathogenic, blue = benign) and can be filtered by\ prediction or percentile score. See the per-track description page for details.
\ \PromoterAI
\Four bigWig subtracks (one per alternate nucleotide) covering positions within\ 500 bp of annotated transcription start sites, plus a bigBed track for\ positions where overlapping transcripts produce different scores.
\ \EVE and popEVE
\Each is a single bigBed track displayed as a heatmap: one column per amino acid\ position (placed at the codon's genomic coordinate) and one row per amino acid. Hover\ over a cell to see the substitution and its score. EVE is colored per protein from blue\ (benign) to red (pathogenic); popEVE uses a single global gradient (red = deleterious,\ blue = tolerated) so that cells are comparable across genes. These tracks are best viewed\ zoomed in to a single gene or exon.
\ \Data Access
\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API, the track names can\ be found via the table browser or by clicking onto the signal tracks.\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server, there is one subdirectory per score.\ The files for this track are called usually called by their alternate allele, e.g. mcapA.bw and mutScoreA.bw. Individual\ regions or the whole genome annotation can be obtained using our tool bigWigToBedGraph\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigWigToBedGraph http://hgdownload.soe.ucsc.edu/gbdb/hg19/mcap/mcapA.bw -chrom=chr21 -start=0 -end=100000000 stdout
\ \ \The original BayesDel files are available at the\ BayesDel website.\
The other algorithms also have their own download formats, on the\ M-CAP website and the MutScore Website.\ \
Methods
\BayesDel data was converted from the files provided on the\ BayesDel_170824 Database.\ The number 170824 is the date (2017-08-24) the scores were created. Both sets of BayesDel scores are\ available in this database, one integrated MaxAF (named BayesDel_170824_addAF) and one without\ (named BayesDel_170824_noAF). Data conversion was performed using\ \ custom Python scripts.\
\ \M-CAP data was converted using a custom Python script and converted to\ bigWig, as documented in the our makeDoc\ text file. MutScore was already available in bigWig format to download.
\ \Credits
\Thanks to the BayesDel, MutScore, M-CAP, ClinPred, PrimateAI-3D and PromoterAI teams for\ providing precomputed data, and to Tiana Pereira, Christopher Lee, Gerardo Perez, and Anna\ Benet-Pages of the Genome Browser team.
\ \References
\\
Alirezaie N, Kernohan KD, Hartley T, Majewski J, Hocking TD.\
\
ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide Variants.\
Am J Hum Genet. 2018 Oct 4;103(4):474-483.\
PMID: 30220433; PMC:
\ Bergquist T, Stenton SL, Nadeau EAW, Byrne AB, Greenblatt MS, Harrison SM, Tavtigian SV,\ O'Donnell-Luria A, Biesecker LG, Radivojac P et al.\ \ Calibration of additional computational tools expands ClinGen recommendation options for variant\ classification with PP3/BP4 criteria.\ Genet Med. 2025 Mar 10;27(6):101402.\ PMID: 40084623\
\ \\
Feng BJ.\
\
PERCH: A Unified Framework for Disease Gene Prioritization.\
Hum Mutat. 2017 Mar;38(3):243-251.\
PMID: 27995669; PMC:
\
Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich ASD,\
Fiziev PP, Kuderna LFK et al.\
\
The landscape of tolerated genetic variation in humans and primates.\
Science. 2023 Jun 2;380(6648):eabn8197.\
PMID: 37262156; PMC:
\ Jagadeesh KA, Wenger AM, Berger MJ, Guturu H, Stenson PD, Cooper DN, Bernstein JA, Bejerano G.\ \ M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high\ sensitivity.\ Nat Genet. 2016 Dec;48(12):1581-1586.\ PMID: 27776117\
\ \\
Pejaver V, Byrne AB, Feng BJ, Pagel KA, Mooney SD, Karchin R, O'Donnell-Luria A, Harrison SM,\
Tavtigian SV, Greenblatt MS et al.\
\
Calibration of computational tools for missense variant pathogenicity classification and ClinGen\
recommendations for PP3/BP4 criteria.\
Am J Hum Genet. 2022 Dec 1;109(12):2163-2177.\
PMID: 36413997; PMC:
\
Quinodoz M, Peter VG, Cisarova K, Royer-Bertrand B, Stenson PD, Cooper DN, Unger S, Superti-Furga A,\
Rivolta C.\
\
Analysis of missense variants in the human genome reveals widespread gene-specific clustering and\
improves prediction of pathogenicity.\
Am J Hum Genet. 2022 Mar 3;109(3):457-470.\
PMID: 35120630; PMC:
\
Sundaram L, Gao H, Padigepati SR, McRae JF, Li Y, Kosmicki JA, Fritzilas N, Hakenberg J,\
Dutta A, Shon J et al.\
\
Predicting the clinical impact of human mutation with deep neural networks.\
Nat Genet. 2018 Aug;50(8):1161-1170.\
PMID: 30038395; PMC:
\
Tian Y, Pesaran T, Chamberlin A, Fenwick RB, Li S, Gau CL, Chao EC, Lu HM, Black MH, Qian D.\
\
REVEL and BayesDel outperform other in silico meta-predictors for clinical variant\
classification.\
Sci Rep. 2019 Sep 4;9(1):12752.\
PMID: 31484976; PMC:
Description
\\ NMD is a cellular quality control mechanism that\ detects and degrades mRNAs containing premature termination codons (PTCs),\ preventing the accumulation of truncated, potentially harmful proteins.\ However, not all PTCs trigger NMD. PTCs in certain regions of a transcript are\ predicted to escape NMD, meaning the truncated mRNA may be translated into a\ protein with unpredictable functional consequences.\ The NMD Escape container includes several tracks that display putative regions where\ PTC variants are assumed to escape the NMD mechanism. These are typically located\ close to the first or last splice junction, within unusually long coding exons,\ or in transcripts without any junction.\
\ \Subtracks
\ \NMD escape regions
\\ Rule-based predictions of NMD escape regions, computed from transcript\ annotations. Three transcript sets are provided:\
\- \
- NMD escape MANE:\ NMD escape regions derived from the MANE Select plus MANE Plus Clinical\ transcript set, a jointly curated NCBI/EBI annotation that defines a\ single high-confidence transcript per protein-coding gene (Select),\ supplemented by additional transcripts of clinical importance\ (Plus Clinical). \
- NMD escape Gencode:\ NMD escape regions derived from GENCODE V49 transcripts. \
- NMD escape NCBI RefSeq:\ NMD escape regions derived from NCBI RefSeq Curated transcripts\ (NM_ and NR_ accessions only). \
\ Click either of the links to the track details here or above to show the four rules\ that were used (50 bp, intronless, 100 bp, long exon >400 nt).\
\ \NMDetective scores
\\ Machine-learning predictions of NMD efficiency from\ Lindeboom\ et al. 2016 (A and B models) and from Veiner et al.\ (NMDetective-AI, pre-print 2026). Positive scores indicate predicted NMD\ triggering; negative scores indicate predicted escape.\
\- \
- NMDetective-A:\ Random forest model for all possible PTCs from nonsense variants. \
- NMDetective-B:\ Decision tree model for all possible PTCs from nonsense variants. \
- NMDetective-A PTC:\ Random forest model for the first out-of-frame PTC from frameshifting indels. \
- NMDetective-B PTC:\ Decision tree model for the first out-of-frame PTC from frameshifting indels. \
- NMDetective-AI and\ NMDetective-AI variants:\ Deep-learning model on MANE Select transcripts (GENCODE V46). Signal track\ shows the position-averaged prediction; variants track shows one item per\ stop-gain mutation per codon. \
Background
\\ The ACMG guidelines say under PVS1:\
\\ \ (ii) One must also be cautious when interpreting truncating variants downstream of the most 3′ truncating variant established as pathogenic in the literature. This is especially true if the predicted stop codon occurs in the last exon or in the last 50 base pairs of the penultimate exon, such that nonsense-mediated decay would not be predicted, and there is a higher likelihood of an expressed protein.\ \
\ \Data Access
\\ The data underlying these tracks can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated analysis,\ the data may be queried from our\ REST API. Please refer to our\ mailing list archives for questions, or our\ Data Access FAQ for more\ information.\
\ \Credits
\\ Thanks to Guido Neidhardt for suggesting this track at HUGO VEPTC 2025 and Andreas Lahner\ for feedback. Thanks to the Decipher Genome Browser team for introducing the idea of a\ track. Thanks to Rik Lindeboom for providing custom tracks.\
\ \References
\\
Kurosaki T, Popp MW, Maquat LE.\
\
Quality and quantity control of gene expression by nonsense-mediated mRNA decay.\
Nat Rev Mol Cell Biol. 2019 Jul;20(7):406-420.\
PMID: 30992545; PMC:
\
Lindeboom RGH, Supek F, Lehner B.\
\
The rules and impact of nonsense-mediated mRNA decay in human cancers.\
Nat Genet. 2016 Oct;48(10):1112-8.\
PMID: 27618451; PMC:
\
Lindeboom RGH, Vermeulen M, Lehner B, Supek F.\
\
The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer\
immunotherapy.\
Nat Genet. 2019 Nov;51(11):1645-1651.\
PMID: 31659324; PMC:
\ Nagy E, Maquat LE.\ \ A rule for termination-codon position within intron-containing genes: when nonsense\ affects RNA abundance.\ Trends Biochem Sci. 1998 Jun;23(6):198-9.\ PMID: 9644970\
\ genes 1 group genes\ longLabel NMD Escape: Predicted regions where premature termination codons escape NMD\ pennantIcon New red ../goldenPath/newsarch.html#042226 "Released Apr. 22, 2026"\ shortLabel NMD Escape\ superTrack on\ track nmd\ type bed 4\ visibility hide\ ncOrfs Non-canonical ORFs Non-canonical Open Reading Frames 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ The non-canonical ORFs supertrack contains tracks that display open reading frames (ORFs)\ found outside of annotated protein-coding sequences. While the human genome has approximately\ 20,000 annotated protein-coding genes, recent advances in ribosome profiling (Ribo-seq) and\ proteomics have revealed widespread translation of ORFs that do not correspond to known\ protein-coding genes. These non-canonical ORFs are found in regions previously considered\ non-coding, including 5' and 3' UTRs, long non-coding RNAs, pseudogenes, and alternative\ reading frames of known genes.\
\ \\ Several subtypes of non-canonical ORFs are commonly distinguished. Upstream ORFs (uORFs)\ are located in 5' UTRs and can regulate translation of the downstream main coding sequence;\ ribosomes that translate a uORF may fail to reinitiate at the main start codon, reducing\ protein output. Small ORFs (sORFs), generally defined as encoding fewer than 100 amino\ acids, have been systematically overlooked by gene annotation pipelines due to their short\ length, but many produce functional micropeptides involved in signaling, metabolism, and\ development. Other types include downstream ORFs (dORFs) in 3' UTRs,\ out-of-frame ORFs that overlap known coding sequences in an alternative reading frame,\ and ORFs in transcripts annotated as non-coding RNAs or pseudogenes.\
\This track collection imports various databases and annotates all ORFs with their Kozak strength, \ and colors the features by Kozak strength.
\ \Click any of the track names below to show their configuration/documentation page:
\ \| Track | \Description | \Items | \Genome Coverage | \
Exon Coverage | \
Start codon | \Kozak strength (ATG only) | \|||
|---|---|---|---|---|---|---|---|---|---|
| ATG | \non-ATG | \Strong | \Moderate | \Weak | \|||||
| UTRannotator uORFs | \Upstream ORFs in 5' UTRs from UTRannotator | \44,435 | \1.15% | \1.15% | \6,236 | \38,199 | \1,307 | \3,054 | \1,875 | \
| GENCODE ncORFs | \GENCODE non-canonical ORFs supported by Ribo-seq | \7,264 | \1.02% | \0.03% | \7,263 | \1 | \1,571 | \3,705 | \1,987 | \
| GENCODE ncORFs primary | \GENCODE non-canonical ORFs – primary set | \10,127 | \0.45% | \0.02% | \6,183 | \3,944 | \1,746 | \3,300 | \1,137 | \
| GENCODE ncORFs comprehensive | \GENCODE non-canonical ORFs – comprehensive set | \28,359 | \2.24% | \0.06% | \13,776 | \14,583 | \3,133 | \7,168 | \3,475 | \
| 5ULTRA uORFs | \uORFs in MANE Select transcripts from 5ULTRA (ATG only) | \22,567 | \2.44% | \0.09% | \22,567 | \0 | \3,768 | \10,862 | \7,472 | \
| nuORFdb | \Non-canonical ORFs from nuORFdb v1.2 | \229,251 | \22.14% | \0.83% | \51,080 | \178,171 | \10,905 | \25,539 | \14,636 | \
| MetamORF | \Meta-database of small ORFs (sORFs) | \664,558 | \33.53% | \1.19% | \147,490 | \517,068 | \33,481 | \74,267 | \39,742 | \
| OpenProt | \Alternative and reference proteins from OpenProt v2.2 | \921,170 | \49.85% | \3.36% | \906,942 | \14,228 | \202,199 | \446,288 | \258,455 | \
| OpenProt (MS>=2) | \OpenProt proteins with mass spectrometry evidence (≥2 peptides) | \377,916 | \40.29% | \1.85% | \367,257 | \10,659 | \106,148 | \181,817 | \79,292 | \
GENCODE ncORFs (Phase I and Phase II)
\\ The three GENCODE ncORF tracks display non-canonical translated open reading frames\ identified from ribosome profiling (Ribo-seq) data and mapped to the GENCODE annotation by\ the GENCODE / TransCODE\ consortium.\
\- \
- Phase I – a consolidated catalog of ATG-initiated ncORFs of at least 16\ codons, called from Ribo-seq data across seven publications and mapped to GENCODE v35.\ Sense-overlapping ORFs were merged, leaving a unique set; over 3,000 are found in\ more than one publication and so are flagged as replicated. This was the basis of\ the original ncORF reference release for Ensembl/GENCODE, HGNC, UniProtKB, and\ PeptideAtlas. \
- Phase II Comprehensive – the expanded catalog (GENCODE v45). Additional\ published Ribo-seq datasets were incorporated and the size and start-codon\ restrictions from Phase I were lifted, so this set includes shorter and non-AUG\ ORFs. \
- Phase II Primary – a high-confidence subset of Phase II filtered for\ translations with especially robust Ribo-seq signatures, comparable to canonical\ protein-coding genes. \
\ See the\ GENCODE ncORFs Phase I subtrack page\ or the Phase II\ primary /\ comprehensive\ pages for download URLs, methods, and references.\
\ \5ULTRA uORFs
\\ 5ULTRA is a pipeline for\ prioritizing 5' UTR variants by their impact on protein translation. As part of the project,\ Chaldebas et al. compiled a reference set of 22,567 ATG-initiated uORFs from two databases\ (Ribo-uORF and uORFdb), mapped to MANE Select transcripts and classified into three functional\ types. See the 5ULTRA uORFs subtrack page\ for more details.\
\ \UTRannotator uORFs
\\ Created by the Whiffin lab,\ UTRannotator\ is a VEP plugin for annotating 5' UTR variants with respect to upstream open reading frames\ (uORFs). As part of the project, the authors compiled a curated reference set of uORFs in\ human 5' UTRs from\ sorfs.org, which contains ORFs supported\ by Ribo-Seq.\ See the UTRannotator uORFs subtrack page\ for more details. Data from sorfs.org is also part of the Metamorf track (see below).\ This track is useful if you have a prediction from the VEP plugin and want to see the context.\
\\ The UTRannotator source data is distributed as single-span features with no exon/intron\ structure, so the uORFs would appear as continuous blocks even across introns of their host\ transcripts. To recover the splicing structure we look up, for each uORF, a same-strand\ MANE Select / MANE Plus Clinical\ transcript whose coordinates overlap the uORF range. The host transcript's exons are\ clipped to the uORF range so that any MANE intron inside the overlap is preserved as an\ intron of the displayed bed12 record. A uORF that extends past either end of MANE keeps\ the MANE introns inside the overlap and gets a single bridging block for the orphan\ portion. If a uORF endpoint falls inside a MANE intron (i.e. UTRannotator originally used\ a transcript whose UTR exon boundaries differ from MANE's), we fall back to the full\ GENCODE comprehensive set and apply\ the same projection. If no donor in either pool can host the uORF, it stays single-block.\ The chosen donor transcript ID is recorded in the intronsSource field\ (or none if no host was found).\
\ \nuORFdb
\\ nuORFdb (novel\ unannotated ORF database) is a Broad Institute database of non-canonical open reading frames\ with evidence of translation from ribosome profiling (Ribo-seq). ORF types include uORFs,\ dORFs, out-of-frame ORFs, pseudogene ORFs, lincRNA ORFs, and others.\ See the nuORFdb subtrack page for more details.\ The nuORFdb database is a very consistent dataset, from a well-known paper.\
\ \MetamORF
\\ MetamORF is a repository of\ small ORFs (sORFs) in the human genome, consolidated from several primary data sources and\ many individual ribosome profiling datasets. It integrates bioinformatic predictions,\ ribosome profiling experiments, and mass spectrometry studies into a unified format.\ See the MetamORF subtrack page for more details.\ Metamorf has many predictions, and not all may be relevant, but gives an example of\ a database with as many models as possible, and is the only complete archive of sorfs.org \ that we are aware of.\
\ \OpenProt
\\ OpenProt is a comprehensive annotation\ of all possible protein-coding ORFs in eukaryotic genomes. It distinguishes RefProts (the\ known canonical proteins), Isoforms (alternative products of canonical genes), and AltProts\ (predicted from alternative reading frames in UTRs, frameshifted CDS overlaps, and\ non-coding RNAs). Each ORF is annotated with mass spectrometry and ribosome profiling\ evidence; a pre-filtered Mass-Spec-supported subset (≥2 unique peptides) is also available.\ See the OpenProt subtrack page for more details.\ OpenProt is widely known and has by far the most predictions, even more than Metamorf, which is\ why a subset exists with only the more reliable ORFs with Mass-Spec data.\
\ \Kozak Strength Annotation
\\ Every ORF in every subtrack carries three additional annotation fields derived from the\ genomic sequence around its start codon:\
\- \
- startCodon – first three bases of the ORF on the transcript strand\ (ATG / CTG / GTG / TTG / ACG / other). \
- kozakStrength – categorical Kozak label\ (Strong if both position −3 is A/G and position +4 is G;\ Moderate if only one of those holds;\ Weak if neither;\ non-ATG for non-AUG starts where the Kozak rule does not apply;\ None if the context could not be retrieved). \
- kozakTE – numeric Kozak translational efficiency (TE), looked up from the\
11-base TIS context in the Noderer 2014 FACS-seq TE table and divided by 100.\
-1for non-ATG starts and rows with no lookup. \
\ Features in every subtrack are colored by the categorical kozakStrength\ field. The same legend applies to all subtracks:\
\\
Strong – A/G at position −3 and G at position +4
\
Moderate – only one of those two positions matches
\
Weak – neither position matches
\
non-ATG – near-cognate start codon; the Kozak rule does not apply
\
no context – chromosome edge or other case where the 11-base context could not be read\
\ Per-subtrack counts of ATG vs. non-ATG starts and the Strong / Moderate / Weak breakdown\ are shown in the table at the top of this page. The high non-ATG fraction in UTRannotator,\ MetamORF, and nuORFdb is inherent to those catalogs — they explicitly include\ non-canonical CTG/GTG/TTG starts. GENCODE Phase I restricted itself to ATG-only starts.\
\ \\ The 11-base Kozak context is fetched directly from the genome at the position of the start\ codon. For multi-exon ORFs with an intron immediately upstream of the start codon, the\ upstream bases of the context are genomic rather than the host transcript's true 5' UTR;\ in that uncommon case the computed Kozak value may be inaccurate.\
\ \\ The Kozak strength annotation and color coding are added by the script\ colorByKozak.py\ in the kent source tree\ (src/hg/makeDb/scripts/ncOrfs/),\ along with the per-track autoSql files, the cached Noderer 2014 TE table, and a\ helper script (addIntrons.py) that recovers exon/intron structure for the\ UTRannotator uORFs. The Kozak strength logic is a Python port of the corresponding\ R routines in the\ VuTR pipeline\ (Whiffin lab / Computational Rare-Disease Genomics, WHG Oxford); credit and thanks to\ the VuTR authors for the original implementation. Full build steps are recorded in\ the\ makedoc.\
\ \ \Data Access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be\ accessed from scripts through our API. See the individual\ track pages for more details.\
\ \\ For automated download and analysis, each subtrack is stored as a bigBed file that can be\ downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain features within a given range, e.g. for the GENCODE\ Phase I ncORF subtrack:\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncOrfs/gencNcOrf/Ribo-seq_ORFs.kozak.bb -chrom=chr21 -start=0 -end=100000000 stdout\ \\ File names for all eight subtracks (under\ /gbdb/hg38/ncOrfs/):\
\- \
- utrAnnotUorfs.kozak.bb – UTRannotator uORFs \
- gencNcOrf/Ribo-seq_ORFs.kozak.bb – GENCODE Phase I ncORFs \
- gencNcOrf/Ribo-seq_ORFs.primary.kozak.bb – GENCODE Phase II primary \
- gencNcOrf/Ribo-seq_ORFs.comprehensive.kozak.bb – GENCODE Phase II comprehensive \
- nuorfdb/nuorfdb.kozak.bb – nuORFdb \
- metamorf/MetamORF.kozak.bb – MetamORF \
- openprot/openprot.kozak.bb – OpenProt \
- openprot/openprot.ms2.kozak.bb – OpenProt MS≥2 \
References
\\ Please refer to each subtrack's description page for references.
\\ References for the Kozak / TE methodology:\
\\
Kozak M.\
\
An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs.\
Nucleic Acids Res. 1987 Oct 26;15(20):8125-48.\
DOI: 10.1093/nar/15.20.8125;\
PMID: 3313277; PMC:
\
Noderer WL, Flockhart RJ, Bhaduri A, Diaz de Arce AJ, Zhang J, Khavari PA, Wang CL.\
\
Quantitative analysis of mammalian translation initiation sites by FACS-seq.\
Mol Syst Biol. 2014 Aug 28;10(8):748.\
DOI: 10.15252/msb.20145136;\
PMID: 25170020; PMC:
Description
\\ This is a super track for non-coding RNA data, subtracks represent some form of non-coding RNA data. \
\Credits
\ \The body map RNA-Seq data was kindly provided by the Gene Expression\ Applications research group at Illumina.
\ \ Genome coordinates for the sno/miRNA track were obtained from the miRBase sequences\ FTP site and from \ \ snoRNABase coordinates download page.\\ \
References
\ \\ When making use of these data, please cite the folowing articles in addition to\ the primary sources of the miRNA sequences:
\\ Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.\ miRBase: tools for microRNA genomics.\ Nucleic Acids Res. 2008 Jan 1;36(Database issue):D154-8.
\\ Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.\ miRBase: microRNA sequences, targets and gene nomenclature.\ Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.
\\ Griffiths-Jones S.\ The microRNA Registry.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.
\\ Weber MJ.\ New human and mouse microRNA genes found by homology search.\
\ You may also want to cite The Wellcome Trust Sanger Institute \ miRBase and The Laboratoire de Biologie Moleculaire \ Eucaryote snoRNABase.
\\ The following publication provides guidelines on miRNA annotation:\ Ambros V. et al., \ A uniform system for microRNA annotation. \ RNA. 2003;9(3):277-9.
\\ \ \
\
Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.\
\
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and\
specific subclasses.\
Genes Dev. 2011 Sep 15;25(18):1915-27.\
PMID: 21890647; PMC:
\
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter\
L.\
\
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform\
switching during cell differentiation.\
Nat Biotechnol. 2010 May;28(5):511-5.\
PMID: 20436464; PMC:
Description
\ \\ This track displays 229,251 non-canonical open reading frames (ORFs) from\ nuORFdb v1.2\ (novel unannotated ORF database), a database of ORFs with evidence of translation detected by\ ribosome profiling (Ribo-seq). nuORFdb was developed at the Broad Institute of MIT and Harvard as a resource for\ identifying non-canonical peptides in immunopeptidomic mass spectrometry datasets.\
\ \\ The ORFs were predicted using a hierarchical pipeline that aggregates ribosome profiling signal\ across 29 primary healthy and cancer tissue samples and cell lines. The pipeline operates at\ multiple levels—individual samples, tissues, and combined across all samples—to predict\ lowly translated ORFs while maintaining sensitivity for tissue-specific variants.\ All ORFs have a minimum length of 8 amino acids.\
\ \Display Conventions and Configuration
\ \\ Items are displayed in bigGenePred format. Each item is labeled with the nuORFdb ORF\ identifier, which encodes the source Ensembl transcript and ORF number (e.g.\ ENST00000488147.1_1_1). Color reflects the categorical\ Kozak consensus strength:\
\\
Strong – A/G at position −3 and G at position +4
\
Moderate – only one of those positions matches
\
Weak – neither position matches
\
non-ATG – near-cognate start codon; the Kozak rule does not apply
\
no context – chromosome edge or context unavailable\
\ Mouseover shows the ORF ID in its host gene, gene biotype, start codon, Kozak\ strength and TE, predictor type, and the simplified plotType category.\
\ \\ Available filters: start codon, Kozak strength, Kozak TE, ORF category\ (plotType: 8 broad classes; or type: 25 finer\ categories).\
\ \\ The track includes the following ORF categories (by type):\
\- \
- Out-of-Frame – ORFs overlapping a CDS but in a different reading frame (57,713) \
- 5' uORF – upstream ORFs in the 5' UTR (32,595) \
- 3' dORF – downstream ORFs in the 3' UTR (30,656) \
- lincRNA – ORFs in long intergenic non-coding RNAs (20,399) \
- 5' Overlap uORF – upstream ORFs overlapping the main CDS (20,119) \
- ncRNA Retained Intron – ORFs in retained-intron transcripts (19,259) \
- 3' Overlap dORF – downstream ORFs overlapping the main CDS (18,028) \
- ncRNA Processed Transcript – ORFs in processed transcripts (14,173) \
- Pseudogene – ORFs in pseudogenes (7,727) \
- Antisense – ORFs in antisense transcripts (6,300) \
- and other minor categories \
\ Each item also includes the predicted protein sequence and additional classification fields\ (predictorType, plotType, geneType) from the nuORFdb annotations.\
\ \Data Access
\ \\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. The data can be accessed from\ scripts through our API; the track name is\ "nuorfdb".\
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncOrfs/nuorfdb/nuorfdb.kozak.bb -chrom=chr21 -start=0 -end=100000000 stdout\ \\ The original data files can be downloaded from the\ nuORFdb website\ at the Broad Institute.\
\ \Methods
\ \\ The nuORFdb v1.2 data files (BED12 coordinates, Excel annotations, and protein FASTA sequences)\ were downloaded from the Broad Institute. The BED12 file was combined with the annotation\ spreadsheet (keyed on ORF_ID_hg38) and protein FASTA (keyed on sequence header ID) to\ produce a bigGenePred+ format file with 23 fields (12 standard BED fields, 8 bigGenePred fields,\ and 3 extended fields: predictorType, plotType, and proteinSequence).\
\ \\ A small number of entries (176 out of 229,251) used non-standard chromosome names\ (e.g. chrGL000008.2, chrMT) which were mapped to UCSC standard names\ (e.g. chr4_GL000008v2_random, chrM).\
\ \Credits
\ \\ Thanks to Tamara Ouspenskaia, Travis Law, Karl Clauser, and colleagues at the Broad Institute\ of MIT and Harvard for creating nuORFdb and making the data publicly available.\ Thanks to Eric Malekos, UCSC, for suggesting this database.\
\ \References
\\
Ouspenskaia T, Law T, Clauser KR, Klaeger S, Sarkizova S, Aguet F, Li B, Christian E, Knisbacher BA,\
Le PM et al.\
\
Unannotated proteins expand the MHC-I-restricted immunopeptidome in cancer.\
Nat Biotechnol. 2022 Feb;40(2):209-217.\
DOI: 10.1038/s41587-021-01021-3; PMID:
Start codon: $startCodon
Kozak: $kozakStrength (TE $kozakTE)
Predictor: $predictorType
Plot type: $plotType\ parent ncOrfs\ shortLabel nuORFdb\ track nuorfdb\ type bigGenePred\ visibility pack\ openprot OpenProt bigGenePred ncORFs: OpenProt - alternative and reference proteins v2.2 3 100 0 0 0 127 127 127 0 0 0
Description
\ \\ This track displays 921,170 protein-coding ORFs from\ OpenProt v2.2, a database that\ provides a comprehensive annotation of all possible protein-coding ORFs in the human genome.\ In addition to currently annotated coding sequences (CDSs) and their reference proteins\ (RefProts), OpenProt predicts alternative ORFs (AltORFs) and their corresponding alternative\ proteins (AltProts) that are hidden within transcripts previously considered to encode only\ a single protein.\
\ \\ A pre-filtered subtrack (OpenProt MS>=2) is also available, containing only the\ 377,916 ORFs with at least 2 unique mass spectrometry peptides detected across studies,\ matching the MS-evidence threshold used by OpenProt for their curated downloads.\
\ \\ OpenProt classifies proteins into three types:\
\- \
- RefProt (246,578) – reference proteins translated from annotated CDSs in mRNAs,\ representing non-redundant sequences from UniProtKB/SwissProt, Ensembl, and NCBI RefSeq \
- AltProt (603,586) – alternative proteins translated from AltORFs in mRNA UTRs,\ in frameshifted reading frames overlapping the CDS, or from ORFs in non-coding RNAs \
- Isoform (71,006) – novel predicted isoforms of known proteins, translated from\ AltORFs that share clear sequence homology with a RefProt from the same gene \
\ AltORFs are further classified by their localization relative to the annotated CDS:\
\- \
- 5'UTR – start codon in the 5' UTR (upstream ORFs) \
- CDS – overlapping the annotated CDS in a different reading frame \
- 3'UTR – start codon in the 3' UTR (downstream ORFs) \
- ncRNA – ORFs in transcripts classified as non-coding RNAs \
Display Conventions and Configuration
\ \\ Items are displayed in bigGenePred format. Items are labeled with the protein accession\ number: IDs starting with IP_ are predicted AltProts, II_ are novel\ isoforms, and other IDs (e.g. NP_, ENSP) are RefProts from existing\ annotations. Color reflects the categorical Kozak consensus strength:\
\\
Strong – A/G at position −3 and G at position +4
\
Moderate – only one of those positions matches
\
Weak – neither position matches
\
non-ATG – near-cognate start codon; the Kozak rule does not apply
\
no context – chromosome edge or context unavailable\
\ Mouseover shows the protein accession in its host gene, protein type and ORF\ localization, start codon, Kozak strength and TE, MS score, TE score, and InterPro\ domain count.\
\ \The track includes the following filter options:
\- \
- Start codon, Kozak strength, Kozak TE – common Kozak filters \
- Protein type – AltProt, RefProt, or Isoform \
- Localization – 5'UTR, 3'UTR, CDS, ncRNA, multiple \
- MS score – minimum unique MS peptides (range) \
- Kozak motif – OpenProt's own +/− annotation \
Data Access
\ \\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. The data can be accessed from\ scripts through our API; the track name is\ "openprot" (all ORFs) or "openprotMs" (MS-filtered).\
\ \\ For automated download and analysis, the genome annotations are stored in bigBed files that\ can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncOrfs/openprot/openprot.kozak.bb -chrom=chr21 -start=0 -end=100000000 stdout\ \\ The original data files can be downloaded from the\ OpenProt download page.\
\ \Methods
\ \\ The OpenProt v2.2 BED12 and TSV annotation files were downloaded from the OpenProt API.\ The BED file (2,846,289 rows) contains genomic coordinates for all predicted ORFs; since the\ same protein can be mapped through multiple transcripts to identical genomic coordinates,\ deduplication reduced this to 921,170 unique genomic features (3 entries with overlapping\ BED blocks were excluded).\
\ \\ Each BED entry was annotated with metadata from the TSV file by joining on protein accession.\ For proteins with multiple transcript entries in the TSV, the annotation with the highest\ MS score was retained. Extended fields include protein type (AltProt/RefProt/Isoform),\ ORF localization, MS score, TE (Translation Event) score, Kozak motif status, InterPro domain\ count, and reading frame.\
\ \\ The annotation is based on GRCh38.p13, Ensembl release 106, and UniProt release 2022_06_01.\
\ \Credits
\ \\ Thanks to Xavier Roucou and the OpenProt team at the Université de Sherbrooke for\ creating OpenProt and making the data publicly available.\
\ \References
\ \\
Brunet MA, Brunelle M, Lucier JF, Delcourt V, Levesque M, Grenier F, Samandi S, Leblanc S, Aguilar\
JD, Dufour P et al.\
\
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.\
Nucleic Acids Res. 2019 Jan 8;47(D1):D403-D410.\
PMID: 30299502; PMC:
\
Brunet MA, Lucier JF, Levesque M, Leblanc S, Jacques JF, Al-Saedi HRH, Guilloy N, Grenier F, Avino\
M, Fournier I et al.\
\
OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes.\
Nucleic Acids Res. 2021 Jan 8;49(D1):D380-D388.\
PMID: 33179748; PMC:
Start codon: $startCodon
Kozak: $kozakStrength (TE $kozakTE)
MS score: $msScore TE score: $teScore Domains: $domains\ parent ncOrfs\ shortLabel OpenProt\ track openprot\ type bigGenePred\ visibility pack\ openprotMs OpenProt (MS>=2) bigGenePred ncORFs: OpenProt - proteins with at least 2 MS peptides v2.2 0 100 0 0 0 127 127 127 0 0 0
Description
\ \\ This track displays 921,170 protein-coding ORFs from\ OpenProt v2.2, a database that\ provides a comprehensive annotation of all possible protein-coding ORFs in the human genome.\ In addition to currently annotated coding sequences (CDSs) and their reference proteins\ (RefProts), OpenProt predicts alternative ORFs (AltORFs) and their corresponding alternative\ proteins (AltProts) that are hidden within transcripts previously considered to encode only\ a single protein.\
\ \\ A pre-filtered subtrack (OpenProt MS>=2) is also available, containing only the\ 377,916 ORFs with at least 2 unique mass spectrometry peptides detected across studies,\ matching the MS-evidence threshold used by OpenProt for their curated downloads.\
\ \\ OpenProt classifies proteins into three types:\
\- \
- RefProt (246,578) – reference proteins translated from annotated CDSs in mRNAs,\ representing non-redundant sequences from UniProtKB/SwissProt, Ensembl, and NCBI RefSeq \
- AltProt (603,586) – alternative proteins translated from AltORFs in mRNA UTRs,\ in frameshifted reading frames overlapping the CDS, or from ORFs in non-coding RNAs \
- Isoform (71,006) – novel predicted isoforms of known proteins, translated from\ AltORFs that share clear sequence homology with a RefProt from the same gene \
\ AltORFs are further classified by their localization relative to the annotated CDS:\
\- \
- 5'UTR – start codon in the 5' UTR (upstream ORFs) \
- CDS – overlapping the annotated CDS in a different reading frame \
- 3'UTR – start codon in the 3' UTR (downstream ORFs) \
- ncRNA – ORFs in transcripts classified as non-coding RNAs \
Display Conventions and Configuration
\ \\ Items are displayed in bigGenePred format. Items are labeled with the protein accession\ number: IDs starting with IP_ are predicted AltProts, II_ are novel\ isoforms, and other IDs (e.g. NP_, ENSP) are RefProts from existing\ annotations. Color reflects the categorical Kozak consensus strength:\
\\
Strong – A/G at position −3 and G at position +4
\
Moderate – only one of those positions matches
\
Weak – neither position matches
\
non-ATG – near-cognate start codon; the Kozak rule does not apply
\
no context – chromosome edge or context unavailable\
\ Mouseover shows the protein accession in its host gene, protein type and ORF\ localization, start codon, Kozak strength and TE, MS score, TE score, and InterPro\ domain count.\
\ \The track includes the following filter options:
\- \
- Start codon, Kozak strength, Kozak TE – common Kozak filters \
- Protein type – AltProt, RefProt, or Isoform \
- Localization – 5'UTR, 3'UTR, CDS, ncRNA, multiple \
- MS score – minimum unique MS peptides (range) \
- Kozak motif – OpenProt's own +/− annotation \
Data Access
\ \\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. The data can be accessed from\ scripts through our API; the track name is\ "openprot" (all ORFs) or "openprotMs" (MS-filtered).\
\ \\ For automated download and analysis, the genome annotations are stored in bigBed files that\ can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncOrfs/openprot/openprot.kozak.bb -chrom=chr21 -start=0 -end=100000000 stdout\ \\ The original data files can be downloaded from the\ OpenProt download page.\
\ \Methods
\ \\ The OpenProt v2.2 BED12 and TSV annotation files were downloaded from the OpenProt API.\ The BED file (2,846,289 rows) contains genomic coordinates for all predicted ORFs; since the\ same protein can be mapped through multiple transcripts to identical genomic coordinates,\ deduplication reduced this to 921,170 unique genomic features (3 entries with overlapping\ BED blocks were excluded).\
\ \\ Each BED entry was annotated with metadata from the TSV file by joining on protein accession.\ For proteins with multiple transcript entries in the TSV, the annotation with the highest\ MS score was retained. Extended fields include protein type (AltProt/RefProt/Isoform),\ ORF localization, MS score, TE (Translation Event) score, Kozak motif status, InterPro domain\ count, and reading frame.\
\ \\ The annotation is based on GRCh38.p13, Ensembl release 106, and UniProt release 2022_06_01.\
\ \Credits
\ \\ Thanks to Xavier Roucou and the OpenProt team at the Université de Sherbrooke for\ creating OpenProt and making the data publicly available.\
\ \References
\ \\
Brunet MA, Brunelle M, Lucier JF, Delcourt V, Levesque M, Grenier F, Samandi S, Leblanc S, Aguilar\
JD, Dufour P et al.\
\
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.\
Nucleic Acids Res. 2019 Jan 8;47(D1):D403-D410.\
PMID: 30299502; PMC:
\
Brunet MA, Lucier JF, Levesque M, Leblanc S, Jacques JF, Al-Saedi HRH, Guilloy N, Grenier F, Avino\
M, Fournier I et al.\
\
OpenProt 2021: deeper functional annotation of the coding potential of eukaryotic genomes.\
Nucleic Acids Res. 2021 Jan 8;49(D1):D380-D388.\
PMID: 33179748; PMC:
Start codon: $startCodon
Kozak: $kozakStrength (TE $kozakTE)
MS score: $msScore TE score: $teScore Domains: $domains\ parent ncOrfs\ shortLabel OpenProt (MS>=2)\ track openprotMs\ type bigGenePred\ visibility hide\ oreganno ORegAnno bed 4 + Regulatory elements from ORegAnno 0 100 102 102 0 178 178 127 0 0 0
Description
\\ This track displays literature-curated regulatory regions, transcription\ factor binding sites, and regulatory polymorphisms from\ ORegAnno (Open Regulatory Annotation). For more detailed\ information on a particular regulatory element, follow the link to ORegAnno\ from the details page. \ \
\ \Display Conventions and Configuration
\ \The display may be filtered to show only selected region types, such as:
\ \- \
- regulatory regions (shown in light blue) \
- regulatory polymorphisms (shown in dark blue) \
- transcription factor binding sites (shown in orange) \
- regulatory haplotypes (shown in red) \
- miRNA binding sites (shown in blue-green) \
To exclude a region type, uncheck the appropriate box in the list at the top of \ the Track Settings page.
\ \Methods
\\ An ORegAnno record describes an experimentally proven and published regulatory\ region (promoter, enhancer, etc.), transcription factor binding site, or\ regulatory polymorphism. Each annotation must have the following attributes:\
- \
- A stable ORegAnno identifier.\
- A valid taxonomy ID from the NCBI taxonomy database.\
- A valid PubMed reference. \
- A target gene that is either user-defined, in Entrez Gene or in EnsEMBL.\
- A sequence with at least 40 flanking bases (preferably more) to allow the\ site to be mapped to any release of an associated genome.\
- At least one piece of specific experimental evidence, including the\ biological technique used to discover the regulatory sequence. (Currently\ only the evidence subtypes are supplied with the UCSC track.)\
- A positive, neutral or negative outcome based on the experimental results\ from the primary reference. (Only records with a positive outcome are currently\ included in the UCSC track.)\
- \
- A transcription factor that is either user-defined, in Entrez Gene\ or in EnsEMBL.\
- A specific cell type for each piece of experimental evidence, using the\ eVOC cell type ontology.\
- A specific dataset identifier (e.g. the REDfly dataset) that allows\ external curators to manage particular annotation sets using ORegAnno's\ curation tools.\
- A "search space" sequence that specifies the region that was\ assayed, not just the regulatory sequence. \
- A dbSNP identifier and type of variant (germline, somatic or artificial)\ for regulatory polymorphisms.\
Credits
\\ ORegAnno core team and principal contacts: Stephen Montgomery, Obi Griffith, \ and Steven Jones from Canada's Michael Smith Genome Sciences Centre, Vancouver, \ British Columbia, Canada.
\\ The ORegAnno community (please see individual citations for various\ features): ORegAnno Citation.\ \
References
\\
Lesurf R, Cotto KC, Wang G, Griffith M, Kasaian K, Jones SJ, Montgomery SB, Griffith OL, Open\
Regulatory Annotation Consortium..\
\
ORegAnno 3.0: a community-driven resource for curated regulatory annotation.\
Nucleic Acids Res. 2016 Jan 4;44(D1):D126-32.\
PMID: 26578589; PMC:
\
Griffith OL, Montgomery SB, Bernier B, Chu B, Kasaian K, Aerts S, Mahony S, Sleumer MC, Bilenky M,\
Haeussler M et al.\
\
ORegAnno: an open-access community-driven resource for regulatory annotation.\
Nucleic Acids Res. 2008 Jan;36(Database issue):D107-13.\
PMID: 18006570; PMC:
\ Montgomery SB, Griffith OL, Sleumer MC, Bergman CM, Bilenky M, Pleasance ED, \ Prychyna Y, Zhang X, Jones SJ. \ ORegAnno: an open access database and curation system for \ literature-derived promoters, transcription factor binding sites and regulatory variation.\ Bioinformatics. 2006 Mar 1;22(5):637-40.\ PMID: 16397004\
\ \ regulation 1 color 102,102,0\ group regulation\ longLabel Regulatory elements from ORegAnno\ shortLabel ORegAnno\ track oreganno\ type bed 4 +\ visibility hide\ orfeomeMrna ORFeome Clones psl ORFeome Collaboration Gene Clones 3 100 34 139 34 144 197 144 0 0 0Description
\ \\ This track show alignments of human clones from the\ ORFeome Collaboration. The goal of the project is to be an\ "unrestricted source of fully sequence-validated full-ORF human cDNA\ clones in a format allowing easy transfer of the ORF sequences into\ virtually any type of expression vector. A major goal is to provide\ at least one fully-sequenced full-ORF clone for each human, mouse, and zebrafish gene.\ This track is updated automatically as new clones become available.\
\ \Display Conventions and Configuration
\ \\ The track follows the display conventions for\ gene prediction\ tracks.
\ \Methods
\ \\ ORFeome human clones were obtained from GenBank and aligned against the\ genome using the blat program. When a single clone aligned in multiple\ places, the alignment having the highest base identity was found. Only alignments\ having a base identity level within 0.5% of the best and at least 96% base\ identity with the genomic sequence were kept.\
\ \Credits and References
\ \\ Visit the ORFeome Collaboration\ members page for a list of credits and references.\
\ genes 1 baseColorDefault diffCodons\ baseColorUseCds genbank\ baseColorUseSequence genbank\ color 34,139,34\ group genes\ indelDoubleInsert on\ indelQueryInsert on\ longLabel ORFeome Collaboration Gene Clones\ parent mgcOrfeomeMrna\ shortLabel ORFeome Clones\ showCdsAllScales .\ showCdsMaxZoom 10000.0\ showDiffBasesAllScales .\ showDiffBasesMaxZoom 10000.0\ track orfeomeMrna\ type psl\ visibility pack\ orphadata Orphanet bigBed 9 + Orphadata: Aggregated Data From Orphanet 0 100 0 0 0 127 127 127 0 0 0 http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=$$Description
\ \\ The Orphadata: Aggregated data from Orphanet (Orphanet) track shows genomic positions \ of genes and their association to human disorders, related epidemiological data, and phenotypic\ annotations. As a consortium of 40 countries throughout the world, \ Orphanet\ gathers and improves knowledge regarding rare diseases and maintains the Orphanet rare disease \ nomenclature (ORPHAcode), essential in improving the visibility of rare diseases in health and\ research information systems. The data is updated monthly by Orphanet and updated monthly \ on the UCSC Genome Browser.\
\ \Display Conventions
\Mouseover on items shows the gene name, disorder name, modes of inheritance(s) (if available), \ and age(s) of onset (if available). Tracks can be filtered according to gene-disorder association \ types, modes of inheritance, and ages of onset. Clicking an item from the browser will return \ the complete entry, including gene linkouts to Ensembl, OMIM, and HGNC, as well as phenotype information \ using HPO (human phenotype ontology) terms.\ \ For more information on the use of this data, see \ the Orphadata FAQs.
\ \Data Access
\The raw data can be explored interactively with the Table Browser, \ or the Data Integrator. \ For automated analysis, the data may be queried from our REST API. \ Please refer to our mailing list archives \ for questions, or our Data Access FAQ \ for more information.\ \
Data is also freely available through \ Orphadata datasets.
\ \Methods
\Orphadata files were reformatted at UCSC to the \ bigBed format.
\ \Credits
\Thank you to the Orphanet and Orphadata team and to Tiana Pereira, Christopher Lee, \ Daniel Schmelter, and Anna Benet-Pages of the Genome Browser team.
\ \References
\\
Pavan S, Rommel K, Mateo Marquina ME, Höhn S, Lanneau V, Rath A.\
\
Clinical Practice Guidelines for Rare Diseases: The Orphanet Database.\
PLoS One. 2017;12(1):e0170365.\
PMID: 28099516; PMC:
\
Nguengang Wakap S, Lambert DM, Olry A, Rodwell C, Gueydan C, Lanneau V, Murphy D, Le Cam Y, Rath A.\
\
Estimating cumulative point prevalence of rare diseases: analysis of the Orphanet database.\
Eur J Hum Genet. 2020 Feb;28(2):165-173.\
PMID: 31527858; PMC:
Description
\\ This track displays translated blat alignments of expressed sequence tags \ (ESTs) in GenBank from organisms other than human.\ ESTs are single-read sequences, typically about 500 bases in length, that \ usually represent fragments of transcribed genes.
\ \Display Conventions and Configuration
\\ This track follows the display conventions for \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.
\\ The strand information (+/-) for this track is in two parts. The\ first + or - indicates the orientation of the query sequence whose\ translated protein produced the match. The second + or - indicates the\ orientation of the matching translated genomic sequence. Because the two\ orientations of a DNA sequence give different predicted protein sequences,\ there are four combinations. ++ is not the same as --, nor is +- the same\ as -+.
\\ The description page for this track has a filter that can be used to change \ the display mode, alter the color, and include/exclude a subset of items \ within the track. This may be helpful when many items are shown in the track \ display, especially when only some are relevant to the current task.
\\ To use the filter:\
- \
- Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of \ valid terms for each text box, consult the table in the Table Browser that \ corresponds to the factor on which you wish to filter. For example, the \ "tissue" table contains all the types of tissues that can be \ entered into the tissue text box. Multiple terms may be entered at once, \ separated by a space. Wildcards may also be used in the\ filter.\
- If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter \ criteria will be highlighted. If "or" is selected, ESTs that \ match any one of the filter criteria will be highlighted.\
- Choose the color or display characteristic that should be used to \ highlight or include/exclude the filtered items. If "exclude" is \ chosen, the browser will not display ESTs that match the filter criteria. \ If "include" is selected, the browser will display only those \ ESTs that match the filter criteria.\
\ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those\ that differ from the genomic sequence. For more information about this option,\ go to the\ \ Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\
\ \Methods
\\ To generate this track, the ESTs were aligned against the genome using \ blat. When a single EST aligned in multiple places, the \ alignment having the highest base identity was found. Only alignments \ having a base identity level within 0.5% of the best and at least 96% base \ identity with the genomic sequence were kept.
\ \Credits
\\ This track was produced at UCSC from EST sequence data submitted to the \ international public sequence databases by scientists worldwide.
\ \References
\\
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\
\
GenBank.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\
PMID: 23193287; PMC:
\
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\
GenBank: update.\
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\
PMID: 14681350; PMC:
\
Kent WJ.\
BLAT - the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
Description
\ \\ This track displays translated blat alignments of vertebrate and\ invertebrate mRNA in\ \ GenBank from organisms other than human.\
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, the items that\ are more darkly shaded indicate matches of better quality.\
\ \\ The strand information (+/-) for this track is in two parts. The\ first + indicates the orientation of the query sequence whose\ translated protein produced the match (here always 5' to 3', hence +).\ The second + or - indicates the orientation of the matching\ translated genomic sequence. Because the two orientations of a DNA\ sequence give different predicted protein sequences, there are four\ combinations. ++ is not the same as --, nor is +- the same as -+.\
\ \\ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\
\ \\ To use the filter:\
- \
- Type a term in one or more of the text boxes to filter the mRNA\ display. For example, to apply the filter to all mRNAs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter. \
- If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only mRNAs that match all filter\ criteria will be highlighted. If "or" is selected, mRNAs that\ match any one of the filter criteria will be highlighted. \
- Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display mRNAs that match the filter criteria.\ If "include" is selected, the browser will display only those\ mRNAs that match the filter criteria. \
\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare mRNAs against the genomic sequence. For more\ information about this option, go to the\ \ Codon and Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\
\ \Methods
\ \\ The mRNAs were aligned against the human genome using translated blat.\ When a single mRNA aligned in multiple places, the alignment having the\ highest base identity was found. Only those alignments having a base\ identity level within 1% of the best and at least 25% base identity with the\ genomic sequence were kept.\
\ \Credits
\ \\ The mRNA track was produced at UCSC from mRNA sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\
\ \References
\\
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\
\
GenBank.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\
PMID: 23193287; PMC:
\
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\
GenBank: update.\
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\
PMID: 14681350; PMC:
\
Kent WJ.\
BLAT - the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
Description
\\ This track shows known protein-coding and non-protein-coding genes \ for organisms other than human, taken from the NCBI RNA reference \ sequences collection (RefSeq). The data underlying this track are \ updated weekly.
\ \Display Conventions and Configuration
\\ This track follows the display conventions for \ gene prediction \ tracks.\ The color shading indicates the level of review the RefSeq record has \ undergone: predicted (light), provisional (medium), reviewed (dark).
\\ The item labels and display colors of features within this track can be\ configured through the controls at the top of the track description page. \
- \
- Label: By default, items are labeled by gene name. Click the \ appropriate Label option to display the accession name instead of the gene\ name, show both the gene and accession names, or turn off the label \ completely.\
- Codon coloring: This track contains an optional codon coloring \ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. For more information about\ this feature, go to the\ \ Coloring Gene Predictions and Annotations by Codon page.\
- Hide non-coding genes: By default, both the protein-coding and\ non-protein-coding genes are displayed. If you wish to see only the coding\ genes, click this box.\
Methods
\\ The RNAs were aligned against the human genome using blat; those\ with an alignment of less than 15% were discarded. When a single RNA aligned \ in multiple places, the alignment having the highest base identity was \ identified. Only alignments having a base identity level within 0.5% of \ the best and at least 25% base identity with the genomic sequence were kept.\
\ \Credits
\\ This track was produced at UCSC from RNA sequence data\ generated by scientists worldwide and curated by the \ NCBI RefSeq project.
\ \References
\\
Kent WJ.\
\
BLAT--the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
\
Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\
Landrum MJ, McGarvey KM et al.\
\
RefSeq: an update on mammalian reference sequences.\
Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\
PMID: 24259432; PMC:
\
Pruitt KD, Tatusova T, Maglott DR.\
\
NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.\
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\
PMID: 15608248; PMC:
Description
\\ This track shows regions of the human genome that are alignable to other Homo sapiens genomes.\ The alignable parts are shown with thick blocks that look like exons.\ Non-alignable parts between these are shown with thin lines like introns.\ More description on this display can be found below.\
\ \\ Other assemblies included in this track are from the\ HPRC project.\
\ \Display Conventions and Configuration
\Chain Track
\ \\ The chain track shows alignments of the human genome to other\ Homo sapiens genomes using a gap scoring system that allows longer gaps\ than traditional affine gap scoring systems. It can also tolerate gaps in both\ source and target assemblies simultaneously. These\ "double-sided" gaps can be caused by local inversions and\ overlapping deletions in both species.\
\ The chain track displays boxes joined together by either single or\ double lines. The boxes represent aligning regions.\ Single lines indicate gaps that are largely due to a deletion in the\ query assembly or an insertion in the target assembly.\ assembly. Double lines represent more complex gaps that involve substantial\ sequence in both species. This may result from inversions, overlapping\ deletions, an abundance of local mutation, or an unsequenced gap in one\ species. In cases where multiple chains align over a particular region of\ the target genome, the chains with single-lined gaps are often\ due to processed pseudogenes, while chains with double-lined gaps are more\ often due to paralogs and unprocessed pseudogenes.
\\ In the "pack" and "full" display\ modes, the individual feature names indicate the chromosome, strand, and\ location (in thousands) of the match for each matching alignment.
\ \By default, the chains to chromosome-based assemblies are colored\ based on which chromosome they map to in the aligning organism. To turn\ off the coloring, check the "off" button next to: Color\ track based on chromosome.
\\ To display only the chains of one chromosome in the aligning\ organism, enter the name of that chromosome (e.g. chr4) in box next to:\ Filter by chromosome.
\ \Methods
\\ The bigChain files were obtained from the\ HPRC S3 bucket (Amazon Web Services). For more\ information about how the bigChain files were generated, please refer to the HPRC publication below.\
\ \Credits
\\ Thank you to Glenn Hickey for providing the HAL file from the HPRC project.\
\ \References
\ \\
Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ et\
al.\
\
A draft human pangenome reference.\
Nature. 2023 May;617(7960):312-324.\
DOI: 10.1038/s41586-023-05896-x; PMID:
\
Hickey G, Monlong J, Ebler J, Novak AM, Eizenga JM, Gao Y, Human Pangenome Reference Consortium,\
Marschall T, Li H, Paten B.\
\
Pangenome graph construction from genome alignments with Minigraph-Cactus.\
Nat Biotechnol. 2023 May 10;.\
DOI: 10.1038/s41587-023-01793-w; PMID:
\
Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q, Xie D, Feng S, Stiller J\
et al.\
\
Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\
Nature. 2020 Nov;587(7833):246-251.\
DOI: 10.1038/s41586-020-2871-y; PMID:
\
Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\
\
Cactus: Algorithms for genome multiple sequence alignment.\
Genome Res. 2011 Sep;21(9):1512-28.\
DOI: 10.1101/gr.123356.111;\
PMID: 21665927; PMC:
Description
\\ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.
\ \\ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| secretory | |
| endothelial | |
| epithelial | |
| fibroblast |
\ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.
\ \Method
\\ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.
\ \\ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\
et al.\
\
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\
Population Structure.\
Cell Syst. 2016 Oct 26;3(4):346-360.e4.\
PMID: 27667365; PMC:
Description
\\ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.
\ \\ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| secretory | |
| endothelial | |
| epithelial | |
| fibroblast |
\ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.
\ \Method
\\ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.
\ \\ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\
et al.\
\
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\
Population Structure.\
Cell Syst. 2016 Oct 26;3(4):346-360.e4.\
PMID: 27667365; PMC:
Description
\\ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.
\ \\ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| secretory | |
| endothelial | |
| epithelial | |
| fibroblast |
\ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.
\ \Method
\\ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.
\ \\ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\
et al.\
\
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\
Population Structure.\
Cell Syst. 2016 Oct 26;3(4):346-360.e4.\
PMID: 27667365; PMC:
Description
\\ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.
\ \\ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| secretory | |
| endothelial | |
| epithelial | |
| fibroblast |
\ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.
\ \Method
\\ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.
\ \\ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\
et al.\
\
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\
Population Structure.\
Cell Syst. 2016 Oct 26;3(4):346-360.e4.\
PMID: 27667365; PMC:
Description
\\ This track shows data from A Single-Cell Transcriptomic Map of the Human and Mouse\ Pancreas Reveals Inter- and Intra-cell Population Structure. Pancreas\ tissue was analyzed using droplet-based single-cell RNA-sequencing (scRNA-seq)\ and subsequent clustering distinguished 14 pancreas-resident cell types based\ on their identified marker genes found in Baron et al., 2016.
\ \\ There are four bar chart tracks in this track collection with pancreas cells\ grouped by either batch (Pancreas Batch),\ cell type (Pancreas Cells), detailed\ cell type (Pancreas Details) and\ donor (Pancreas Donor). The default track\ displayed is pancreas cells grouped by cell type.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| secretory | |
| endothelial | |
| epithelial | |
| fibroblast |
\ Cells that fall into multiple classes will be colored by blending the colors\ associated with those classes. The colors will be purest in the\ Pancreas Cells\ subtrack, where the bars represent relatively pure cell types. They can give an\ overview of the cell composition within other categories in other subtracks as\ well.
\ \Method
\\ Human islets were obtained from two female cadaveric donors ages 51 (human2)\ and 59 (human4) and two male cadaveric donors ages 17 (human1) and 38 (human3).\ The samples collected from human 1-3 were non-diabetic and human 4 had type 2\ diabetes mellitus. Using single-cell RNA-sequencing ~10,000 human pancreatic\ cells were isolated and sequenced. For each donor, several separate batches of\ ~800 cells were prepared and sequenced to obtain an average of about 100,000\ reads per cell. Cells were barcoded using the inDrop platform which follows the\ CEL-Seq protocol for library construction. Paired end sequencing was done on\ the Illumina Hiseq 2500. After filtering out cells with limited numbers of\ detected genes, the dataset contained 8,629 cells from the four donors.
\ \\ The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Mayaan Baron, Adrian Veres, Samuel L. Wolock, Aubrey L. Faust, and to\ the many authors who worked on producing and publishing this data set. The data\ were integrated into the UCSC Genome Browser by Jim Kent and Brittney Wick then\ reviewed by Jairo Navarro. The UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\
et al.\
\
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\
Population Structure.\
Cell Syst. 2016 Oct 26;3(4):346-360.e4.\
PMID: 27667365; PMC:
Description
\\ The PanelApp tracks show regions that are related to human disorders. These can be either\ genes, short tandem repeats, or copy number variants. The regions were curated by groups of\ specialists collaborating using the PanelApp web tool. The primary website is Genomics England PanelApp.\ Another deployment of the website, with different data, is \ PanelApp Australia.\
\ \\ Originally, PanelApp was developed to aid interpretation of participant genomes in the\ \ 100,000 Genomes Project.\ Genomics England PanelApp\ is now being used as the platform for achieving consensus on gene panels in the NHS\ Genomic Medicine Service (GMS). Later, the same platform was also deployed by\ Australian\ Genomics.\
\ \\ Genes and genomic\ entities, so short tandem repeats/STRs and copy number variants/CNVs,\ have been reviewed by experts to enable a community consensus to be reached on which\ genes and genomic entities should appear on a diagnostics grade panel for each disorder.\ A rating system (confidence level 0 - 3) is used to classify the level of evidence\ supporting association with phenotypes covered by the gene panel in question.\
\ \\ There are six subtracks in total: Three different types (genes, STRs, and CNVs), and these \ three exist for both countries, England and Australia. The three types of tracks are:
\ \- \
- \
PanelApp Genes (PanelApp Genes):\
\ shows genes with evidence supporting a gene-disease relationship.\ \
- \
PanelApp STRs (PanelApp STRs):\
\ shows short tandem repeats that can be disease-causing when a particular number of repeats is\ present. \
- \
Only on hg38: PanelApp Regions (PanelApp CNV Regions):\
\ shows copy-number variants (region-loss and region-gain) with evidence supporting a gene-disease\ relationship. \
\
\
Display Conventions
\ \\
There are a few differences between the Genomics England and the Australian Genomics tracks:
\
Genomics England\
- \
- By default, only items with a version greater than or equal to 1 are displayed. This\ can be changed in the track configuration menu. \
- \
- For the PanelApp Genes track, only items from the Mendeliome and\ Incidentalome panels are displayed by default. The sum total of these two panels represents all the\ gene-disease relationships available on the platform and provides an overarching assessment of the\ association between each gene and disease(s). Pulling information from other panels can be\ confusing, as the same gene may have different ratings across different panels. \ \
- By default, all versions are displayed (versions greater than 0). This\ can be changed in the track configuration menu. \
\ The individual tracks are colored by confidence level:\ \
- \
- Score 3 (lime green) - High level of evidence \ for this gene-disease association. Demonstrates confidence that this gene should be \ used for genome interpretation. \
- Score 2 (amber) - Moderate evidence \ for this gene-disease association. This gene should not be used for genomic \ interpretation. \
- Score 0 or 1 (red) - Not enough evidence \ for this gene-disease association. This gene should not be used for \ genomic interpretation. \
\ Mouseover on items shows the gene name, panel associated, mode of inheritance \ (if known), phenotypes related to the gene, and confidence level. Tracks can \ be filtered according to the confidence \ level of disease association evidence. For more information on \ the use of this data, see the PanelApp\ FAQs.\
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API.\
\\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The files for this track are called genes.bb, tandRep.bb, and cnv.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed,\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool\ can also be used to obtain only features within a given range, e.g. \ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/panelApp/genes.bb -chrom=chr21 -start=0 -end=100000000 stdout
\ \\ Please refer to our\ \ mailing list archives for questions, or our\ \ Data Access FAQ for more information.\
\\ Data is also freely available on the\ Genomics England PanelApp API\ and the Australia PanelApp API.\
\ \Updates and archiving of old releases
\\ This track is updated automatically every week. If you need to access older releases of the data,\ you can download them from our archive directory on the download server. To load them into the browser, select a week on the archive directory, copy the link to a file, go to My Data > Custom Tracks, click "Add custom track", paste the link into the box, and click "Submit".\
\ \Methods
\\ PanelApp files were reformatted at UCSC to the bigBed format. The script that updates the track is called \ doPanelApp.py and can be found in our GitHub repository.\
\ \Credits
\\ Thank you to Genomics England PanelApp, especially Catherine Snow for technical\ coordination and consultation, and Zornitza Stark from Australia PanelApp.\ Thanks to Beagan Nguy, Lou Nassar, Christopher Lee, Daniel Schmelter, Ana\ Benet-Pagès and Maximilian Haeussler of the Genome Browser team for the\ creation of the tracks.\
\ \Reference
\\ Martin AR, Williams E, Foulger RE, Leigh S, Daugherty LC, Niblock O, Leong IUS, Smith KR,\ Gerasimenko O, Haraldsdottir E et al.\ \ PanelApp crowdsources expert knowledge to establish consensus diagnostic gene panels.\ Nat Genet. 2019 Nov;51(11):1560-1565.\ PMID: 31676867\
\ phenDis 1 compositeTrack on\ dataVersion /gbdb/$D/panelApp/version.txt\ group phenDis\ longLabel Genomics England and Australia PanelApp Diagnostics\ noParentConfig on\ shortLabel PanelApp\ showCfg on\ track panelApp\ type bigBed 9 +\ visibility hide\ panmask151b Panmask Easy 151b bigBed 3 Panmask Easy 151b Regions: High accuracy for variant calling 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. The hg19 genome has a track with the same name, but with\ more subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist \ for hg38.\ \
Problematic Regions
\\ The Problematic Regions track contains the following subtracks:\
- \
- \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ The data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\ \ \
- \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \ \ \
- \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\ \
Highly Reproducible Regions (HighRepro)
\\ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\
\- \
- a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8 \
- a HapMap Trio, samples NA10385, NA12248, NA12249 \
- a Genome in a Bottle sample, NA12878s \
GIAB Problematic Regions
\The Genome in a Bottle (GIAB) Problematic Regions tracks provide stratifications of the\ genome to evaluate variant calls in complex regions. It is designed for use with Global Alliance\ for Genomic Health (GA4GH) benchmarking tools like\ hap.py\ and includes regions with low complexity, segmental duplications, functional regions,\ and difficult-to-sequence areas. Developed in collaboration with GA4GH, the\ Genome in a Bottle (GIAB) consortium, and the\ Telomere-to-Telomere Consortium (T2T), the dataset aims to standardize the\ analysis of genetic variation by offering pre-defined BED files for stratifying true and false\ positives in genomic studies, facilitating accurate assessments in complex areas of the genome.
\ \\ The creation of the GIAB Problematic Regions tracks involves using a pipeline and configuration to\ generate stratification BED files that categorize genomic regions based on specific challenges,\ such as low complexity or difficult mapping, to facilitate accurate benchmarking of variant calls.\ For more information on the pipeline and configuration used, please visit the following webpage:\ \ https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/README.md.\ If you have questions or comments, please write to Justin Zook (jzook@nist.gov).
\ \Panmask Easy 151b Regions
\\ The Panmask Easy 151b Regions subtrack contains a set of sample-agnostic easy regions where\ short-read variant calling reaches high accuracy. Easy regions are derived for variant filtration\ agnostic to individual samples. They are genomic intervals where general variant callers achieve\ high accuracy without sophisticated filtering.
\\ A set of easy regions for ancient DNA variant filtering was generated by selecting 35-mers that\ could not be mapped elsewhere within one mismatch or gap. Read alignments from multiple samples\ were inspected to exclude regions with excessively high or low coverage or those enriched with\ low mapping quality alignments. The easy regions generated through this k-mer uniqueness procedure\ are referred to as pm151:lenient, where "pm" stands for panmask. In addition, low\ complexity regions identified by SDUST were removed.
\The pm151 regions are used to filter spurious variant calls in centromeres, long repeats, and\ other genomic regions where short-read mapping is often problematic. They cover 88.2% of hg38,\ 92.2% of coding regions, and 96.3% of ClinVar pathogenic variants. The track can be used to filter\ variant calls for clinical or research human samples. Like the HighRepro track in this container\ (see above), it shows regions that are easy to sequence, not those that are problematic. The data\ was derived from the HPRC assemblies, and this track presents the 151b-easy panmask set.
\ \Display Conventions and Configuration
\ \\ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\
\ \\ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\
\ \Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \
\
For automated download and analysis, the genome annotation is stored in bigBed files that\
can be downloaded from\
our download server.\
Individual\
regions or the whole genome annotation can be obtained using our tool bigBedToBed\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g. \
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout
\
Methods
\ \\ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\
\ \Credits
\\ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\
\ \References
\\
Amemiya HM, Kundaje A, Boyle AP.\
\
The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\
Sci Rep. 2019 Jun 27;9(1):9354.\
PMID: 31249361; PMC:
\
Dwarshuis N, Kalra D, McDaniel J, Sanio P, Alvarez Jerez P, Jadhav B, Huang WE, Mondal R, Busby B,\
Olson ND et al.\
\
The GIAB genomic stratifications resource for human reference genomes.\
Nat Commun. 2024 Oct 19;15(1):9029.\
PMID: 39424793; PMC:
\
Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA,\
Tezak Z, Lababidi S et al.\
\
Best practices for benchmarking germline small-variant calls in human genomes.\
Nat Biotechnol. 2019 May;37(5):555-560.\
PMID: 30858580; PMC:
\
Li H.\
\
Finding easy regions for short-read variant calling from pangenome data.\
ArXiv. 2025 Aug 8;.\
PMID: 40799803; PMC:
\
Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\
al.\
\
Assessing reproducibility of inherited variants detected with short-read whole genome\
sequencing.\
Genome Biol. 2022 Jan 3;23(1):2.\
PMID: 34980216; PMC:
Description
\ \\ Most proteins are composed of one or more conserved functional regions called\ domains. This track shows the high-quality, manually-curated\ \ Pfam-A\ domains found in transcripts located in the GENCODE Genes track by the software HMMER3.\
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ gene\ tracks.\
\ \Methods
\ \\ The sequences from the knownGenePep table (see \ GENCODE Genes description page)\ are submitted to the set of Pfam-A HMMs which annotate regions within the\ predicted peptide that are recognizable as Pfam protein domains. These regions\ are then mapped to the transcripts themselves using the\ \ pslMap utility. A complete shell script log for every version of UCSC genes can be found in \ our GitHub repository under \ \ hg/makeDb/doc/ucscGenes, e.g. \ \ mm10.knownGenes17.csh is for the database mm10 and version 17 of UCSC known genes.\
\ \\ Of the several options for filtering out false positives, the "Trusted cutoff (TC)" \ threshold method is used in this track to determine significance. For more information regarding \ thresholds and scores, see the HMMER \ documentation and\ results interpretation pages.\
\ \\ Note: There is currently an undocumented but known HMMER problem which results in lessened \ sensitivity and possible missed searches for some zinc finger domains. Until a fix is released for \ HMMER /PFAM thresholds, please also consult the "UniProt Domains" subtrack of the UniProt\ track for more comprehensive zinc finger annotations.\
\ \Credits
\ \\ pslMap was written by Mark Diekhans at UCSC.\
\ \References
\ \\
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G,\
Forslund K et al.\
The Pfam protein families database.\
Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22.\
PMID: 19920124; PMC:
Description
\\ This tracks contains variants of individual genotypes, usually phased, from the projects\ Human Diversity Genome Project, Simons Genome Diversity Project, gnomad's HGDP+1000 Genomes callset,\ and the Mexico Biobank.\ The original release of 1000 Genomes has its own, separate track.\ Projects where the released variants are not phased can be found in the container track "SNV Frequencies".\
\ \\ Available on hg19 and hg38:
\- \
- \ Mexico Biobank (MXB):\ This track displays phased alleles from the Mexico Biobank Project (MXB), based on array\ genotyping of 6,011 individuals sampled across all 32 states of Mexico during the 2000\ National Health Survey (ENSA 2000) conducted by the National Institute of Public Health\ (INSP). Frequencies can be plotted onto a map on\ MexVar.\ The hg38 track was lifted from hg19.\ \ \
- \ Simons Genome Diversity Project (SGDP):\ Funded by the Simons Foundation, the Simons Genome Diversity Project\ is a large-scale effort that sequenced high-coverage genomes from 300\ individuals (279 in this track) representing 142 diverse and often\ indigenous populations worldwide.\ Its goal was to capture the full range of human genetic\ diversity to better understand population history, migration, and\ adaptation. It is sampling populations in a way that represents as much\ anthropological, linguistic and cultural diversity as possible, and\ thus includes many deeply divergent human populations that are not well\ represented in other datasets. SGDP emphasizes breadth of global representation and\ population history, whereas HGDP emphasizes continuity and\ comparability across major population groups. Not all iits data is\ public, so this track contains only 279 genomes. For details, see\ (Mallick et al, Nature 2016). The hg38 track was lifted from hg19.\ \
\ Available only on hg38:
\- \
- \ Human Genome Diversity Project (HGDP):\ 929 high-coverage genome sequences from 54 diverse human populations,\ 26 of which are physically phased using linked-read sequencing. The\ Human Genome Diversity Project (HGDP) was launched in the early 1990s\ to study the genetic variation and evolutionary history of modern\ humans across global populations. Its goal was to document the full\ spectrum of human genetic diversity, particularly in indigenous and\ geographically isolated groups, to better understand population\ structure, migration, adaptation, and disease susceptibility.The\ project collected samples from ~1,000 individuals representing over 50\ populations worldwide, including groups from Africa, Europe, Asia,\ Oceania, and the Americas. These data have become a foundational\ reference for population genetics and human evolution studies.\ Data can be downloaded from the\ Sanger Website. For details, see (Bergström et al, Science 2020).\ \ \
- \ gnomAD HGDP and 1000 Genomes callset:\ A reprocessed version by the gnomAD project for the 1000 Genomes and\ Human Genome Diversity Project (HGDP) data, with 4094 genomes from 80\ populations. We already have separate, older tracks for 1000 Genomes on the main hg38\ browser and for HGDP, just above. This track combines both datasets, with harmonized data\ quality. For details, see (Koenig et al, 2024).\ \
Display Conventions
\ \\ Full haplotype display:\ In "pack" mode, this track sorts the haplotypes. This can be\ useful for determining the similarity between the samples and inferring\ inheritance at a particular locus.\ Each sample's phased and/or homozygous genotypes are split into haplotypes,\ clustered by similarity around a central variant (in pink), and sorted for\ display by their position in the clustering tree. Click a variant to center on it.\ The tree (as space allows) is drawn in the label area next to the track image.\ Leaf clusters, in which all haplotypes are identical (at least for the variants\ used in clustering), are colored purple. \
\\ For a full description of how the display works, please see our \ Haplotype Display help page.\ \
Data Access
\\ MXB: Allele frequencies by geographical state and ancestry are available via\ the MexVar platform.\ Raw genotype data are available under controlled access at the\ EGA (Study: EGAS00001005797; Dataset: EGAD00010002361). For the VCFs, email\ andres.moreno@cinvestav.mx.\
\ \Methods
\\ SGDP: The version used was\ https://sharehost.hms.harvard.edu/genetics/reich_lab/sgdp/vcf_variants/,\ merged with bcftools and lifted to hg38 with CrossMap. \
\ \Credits
\\ MXB: We thank the Center for Research and Advanced Studies (Cinvestav) of Mexico for\ generating and providing the frequency data, the National Institute of Medical\ Sciences and Nutrition (INCMNSZ) for DNA extraction, and the Ministry of Health\ together with the National Institute of Public Health (INSP) for the design and\ implementation of the National Health Survey 2000 (ENSA 2000). We also thank\ the ENSA-Genomics Consortium for their contributions to sample collection and\ data processing that made possible the construction of the MXB genomic\ resource.\
\\ SGDP: This project was funded by the Simons Foundation. Thanks to David Reich and Swapan \ Mallick for help with importing the data.\
\ \References
\\
Barberena-Jonas C, Medina-Muñoz SG, Cedillo-Castelán V, Sepúlveda-Morales T,\
Gonzaga-Jáuregui C, ENSA Genomics Consortium, García-García L, Ioannidis AG,\
Moreno-Estrada A.\
\
Clinical genetic variation across Hispanic populations in the Mexican Biobank.\
Nat Med. 2026 Jan 21;.\
DOI: 10.1038/s41591-025-04100-z; PMID:
\
Sohail M, Moreno-Estrada A.\
\
The Mexican Biobank Project promotes genetic discovery, inclusive science and local capacity\
building.\
Dis Model Mech. 2024 Jan 1;17(1).\
PMID: 38299665; PMC:
\
Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Corés CD, Barberena-Jonas C, Medina-Muñoz SG,\
Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L et al.\
\
Mexican Biobank advances population and medical genomics of diverse ancestries.\
Nature. 2023 Oct;622(7984):775-783.\
PMID: 37821706; PMC:
\
Bergström A, McCarthy SA, Hui R, Almarri MA, Ayub Q, Danecek P, Chen Y, Felkel S, Hallast P, Kamm J\
et al.\
\
Insights into human genetic variation and population history from 929 diverse genomes.\
Science. 2020 Mar 20;367(6484).\
PMID: 32193295; PMC:
\
Koenig Z, Yohannes MT, Nkambule LL, Zhao X, Goodrich JK, Kim HA, Wilson MW, Tiao G, Hao SP, Sahakian\
N et al.\
\
A harmonized public resource of deeply sequenced diverse human genomes.\
Genome Res. 2024 Jun 25;34(5):796-809.\
PMID: 38749656; PMC:
\
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S,\
Tandon A et al.\
\
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.\
Nature. 2016 Oct 13;538(7624):201-206.\
PMID: 27654912; PMC:
Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars T_cell_CD4+ T_cell_CD8+ extravillous_trophoblast_(EVT) endothelial_cell T_cell_mucosal_(MAIT) myeloid_cell natural_killer_cell_(NK) other_immune_cell syncytiotrophoblast_(SCT) villous_cytotrophoblast_(VCT) decidual_perivascular_cell_(dP) decidual_stromal_cell_(dS) fetal_fibroblast_(fFB)\ barChartColors #f63247 #fa3248 #6026c2 #06bb03 #f73247 #de2903 #f03142 #ee1313 #5823d1 #5923cf #a1288a #be03bb #af4f22\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell type 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Cells\ track placentaVentoTormoCellType10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ placentaVentoTormoCellTypeSs2 Placenta Cells Ss2 bigBarChart Placenta and decidua cells binned by cell type smart-seq2 from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars T_cell_CD4+ T_cell_CD8+ extravillous_trophoblast_(EVT) endothelial_cell T_cell_mucosal_(MAIT) myeloid_cell natural_killer_cell_(NK) other_immune_cell syncytiotrophoblast_(SCT) villous_cytotrophoblast_(VCT) decidual_perivascular_cell_(dP) decidual_stromal_cell_(dS) fetal_fibroblast_(fFB)\ barChartColors #f83147 #fa3249 #906de0 #90e28f #fa7685 #df2902 #f63248 #f46162 #cebef2 #e66b76 #c76bb1 #d456d3 #efdcd3\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/cell_type.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell type smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Cells Ss2\ track placentaVentoTormoCellTypeSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoCellDetailed10x Placenta Detail bigBarChart Placenta and decidua cells binned by detailed cell type 10x from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars DC1 DC2 EVT Endo_(f) Endo_(m) Endo_L Granulocytes HB ILC3 MAIT MO NK_CD16+ NK_CD16- PB_Naive_CD4_ PB_Naive_CD8 PB_clonal_CD8 Plasma SCT Treg VCT dM1 dM2 dM3 dNK_p dNK1 dNK2 dNK3 dP1 dP2 dS1 dS2 dS3 dT_CD4 dT_CD8 fFB1 fFB2\ barChartColors #ef6665 #ef6565 #6026c2 #78b768 #0db506 #6bc361 #ee6e73 #ce2e17 #f4737d #f73247 #e22016 #f23144 #f97684 #f53246 #f43246 #f73247 #ef6668 #5823d1 #f6737d #5923cf #db2a07 #dc2a08 #d72b0d #e32d36 #ea303d #ef3142 #f03142 #8f3b75 #ad1a9a #bd05b8 #bd05b7 #b2169d #f83247 #f43042 #af4f22 #c48778\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/detailed_cell_type.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/detailed_cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by detailed cell type 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Detail\ track placentaVentoTormoCellDetailed10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoCellDetailedSs2 Placenta Detail Ss2 bigBarChart Placenta and decidua cells binned by detailed cell type smart-seq2 from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars DC1 DC2 EVT Endo_(m) Endo_L Granulocytes HB ILC3 MAIT MO NK_CD16+ NK_CD16- PB_Naive_CD4_ PB_Naive_CD8 PB_clonal_CD8 Plasma SCT Treg VCT dM1 dM2 dM3 dNK_p dNK1 dNK2 dNK3 dP1 dP2 dS1 dS2 dS3 dT_CD4 dT_CD8 fFB1\ barChartColors #f6bcbd #f6bcbc #906de0 #90e18f #dbe7d5 #f2bfc4 #f4c0b6 #fac0c5 #fa7685 #e67061 #f77684 #fbc2c8 #f73146 #f87684 #f97685 #f6bcbd #cebef2 #fabec2 #e66b76 #db2a06 #e6715b #f4c0b7 #f8c2c8 #f27684 #f77685 #f97685 #e4c0d8 #e8bcdf #d458d0 #d458d1 #eab9e4 #fa7684 #f83248 #efdcd3\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/detailed_cell_type.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/detailed_cell_type.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by detailed cell type smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Detail Ss2\ track placentaVentoTormoCellDetailedSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoLocation10x Placenta Loc bigBarChart Placenta and decidua cells binned by cell location 10x from Vento-Tormo et al 2018 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars Blood Decidua Placenta\ barChartColors #f73246 #c6294e #5923cf\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Location.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Location.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell location 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Loc\ track placentaVentoTormoLocation10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ placentaVentoTormoLocationSs2 Placenta Loc Ss2 bigBarChart Placenta and decidua cells binned by cell location smart-seq2 from Vento-Tormo et al 2018 3 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars Blood Decidua\ barChartColors #f22532 #e9222c\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/Location.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/Location.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by cell location smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Loc Ss2\ track placentaVentoTormoLocationSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility pack\ placentaVentoTormoMatFet10x Placenta Mat/Fet bigBarChart Placenta and decidua cells binned by maternal/fetal 10x from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars fetal maternal unknown\ barChartColors #5823d1 #e32935 #6bc361\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/mom_child.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/mom_child.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by maternal/fetal 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Mat/Fet\ track placentaVentoTormoMatFet10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormoMatFetSs2 Placenta Mat/Fet Ss2 bigBarChart Placenta and decidua cells binned by maternal/fetal smart-seq2 from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars fetal maternal\ barChartColors #936ddc #f0232e\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/mom_child.stats\ barChartUnit units/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/ss2/mom_child.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by maternal/fetal smart-seq2 from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Mat/Fet Ss2\ track placentaVentoTormoMatFetSs2\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+ss2&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placenta_placenta_models Placenta models bigBed 12 + Placenta transcript models 4 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/cls-models-Placenta.bb\ longLabel Placenta transcript models\ parent sample_models_view on\ shortLabel Placenta models\ subGroups view=sample_models_view sample=placenta_placenta type=models\ track placenta_placenta_models\ type bigBed 12 +\ visibility squish\ placenta_placenta_ont_post_models Placenta ONT post models bigBed 12 + Placenta ONT post-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/ont-Crg-CapTrap_Hv3_0+_Placenta01Rep1.bb\ itemRgb on\ longLabel Placenta ONT post-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Placenta ONT post models\ subGroups view=per_expr_models_view sample=placenta_placenta type=post_capture_ont_models\ track placenta_placenta_ont_post_models\ type bigBed 12 +\ visibility hide\ placenta_placenta_ont_post_reads Placenta ONT post reads bam Placenta ONT post-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/ont-Crg-CapTrap_Hv3_0+_Placenta01Rep1.bam\ longLabel Placenta ONT post-capture reads\ parent per_expr_reads_view off\ shortLabel Placenta ONT post reads\ subGroups view=per_expr_reads_view sample=placenta_placenta type=post_capture_ont_reads\ track placenta_placenta_ont_post_reads\ type bam\ visibility hide\ placenta_placenta_ont_pre_models Placenta ONT pre models bigBed 12 + Placenta ONT pre-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/ont-Crg-CapTrap_HpreCap_0+_Placenta01Rep1.bb\ itemRgb on\ longLabel Placenta ONT pre-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Placenta ONT pre models\ subGroups view=per_expr_models_view sample=placenta_placenta type=pre_capture_ont_models\ track placenta_placenta_ont_pre_models\ type bigBed 12 +\ visibility hide\ placenta_placenta_ont_pre_reads Placenta ONT pre reads bam Placenta ONT pre-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/ont-Crg-CapTrap_HpreCap_0+_Placenta01Rep1.bam\ longLabel Placenta ONT pre-capture reads\ parent per_expr_reads_view off\ shortLabel Placenta ONT pre reads\ subGroups view=per_expr_reads_view sample=placenta_placenta type=pre_capture_ont_reads\ track placenta_placenta_ont_pre_reads\ type bam\ visibility hide\ placenta_placenta_pacbio_post_models Placenta PB post models bigBed 12 + Placenta PacBio post-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/pacBioSII-Cshl-CapTrap_Hv3_0+_Placenta01Rep1.bb\ itemRgb on\ longLabel Placenta PacBio post-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Placenta PB post models\ subGroups view=per_expr_models_view sample=placenta_placenta type=post_capture_pacbio_models\ track placenta_placenta_pacbio_post_models\ type bigBed 12 +\ visibility hide\ placenta_placenta_pacbio_post_reads Placenta PB post reads bam Placenta PacBio post-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/pacBioSII-Cshl-CapTrap_Hv3_0+_Placenta01Rep1.bam\ longLabel Placenta PacBio post-capture reads\ parent per_expr_reads_view off\ shortLabel Placenta PB post reads\ subGroups view=per_expr_reads_view sample=placenta_placenta type=post_capture_pacbio_reads\ track placenta_placenta_pacbio_post_reads\ type bam\ visibility hide\ placenta_placenta_pacbio_pre_models Placenta PB pre models bigBed 12 + Placenta PacBio pre-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/pacBioSII-Cshl-CapTrap_HpreCap_0+_Placenta01Rep1.bb\ itemRgb on\ longLabel Placenta PacBio pre-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Placenta PB pre models\ subGroups view=per_expr_models_view sample=placenta_placenta type=pre_capture_pacbio_models\ track placenta_placenta_pacbio_pre_models\ type bigBed 12 +\ visibility hide\ placenta_placenta_pacbio_pre_reads Placenta PB pre reads bam Placenta PacBio pre-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/pacBioSII-Cshl-CapTrap_HpreCap_0+_Placenta01Rep1.bam\ longLabel Placenta PacBio pre-capture reads\ parent per_expr_reads_view off\ shortLabel Placenta PB pre reads\ subGroups view=per_expr_reads_view sample=placenta_placenta type=pre_capture_pacbio_reads\ track placenta_placenta_pacbio_pre_reads\ type bam\ visibility hide\ placentaVentoTormoStage10x Placenta Stage bigBarChart Placenta and decidua cells binned by placental stage 10x from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 1 barChartBars 12_+_1_LMP_(12_+_1_PCW) 12+2_LMP(10+2_PCW) 6_GW_/_LMP_(4_PCW) 8_+_2_LMP_(6_+_2_PCW) 9_+_2GW_(7_+_2_PCW) 9+2_GW_/_LMP_(7_PCW) 9+4_LMP(7+4_PCW)\ barChartColors #ed2c3a #ec2f3b #6026c3 #d72835 #a62c71 #6226c0 #bd06b6\ barChartLimit 2\ barChartMetric mean\ barChartStatsUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Stage.stats\ barChartUnit UMI/cell\ bigDataUrl /gbdb/hg38/bbi/placentaVentoTormo/10x/Stage.bb\ defaultLabelFields name\ html placentaVentoTormo\ labelFields name,name2\ longLabel Placenta and decidua cells binned by placental stage 10x from Vento-Tormo et al 2018\ parent placentaVentoTormo\ shortLabel Placenta Stage\ track placentaVentoTormoStage10x\ transformFunc NONE\ type bigBarChart\ url https://cells.ucsc.edu/?ds=placenta-decidua+10x&gene=$$\ urlLabel View on the UCSC Cell Browser:\ visibility hide\ placentaVentoTormo Placenta Vento-Tormo Placenta and decidua cells from from Vento-Tormo et al 2018 0 100 0 0 0 127 127 127 0 0 0Description
\\
This track displays data from
\ This track collection contains nine bar chart tracks of RNA expression in the\ human placenta, decidua, and maternal PBMCs\ where cells are grouped by cell type (Placenta\ Cells, Placenta Cells Ss2), detailed\ cell type (Placenta Detail,\ Placenta Detail Ss2), cell location\ (Placenta Loc,\ Placenta Loc Ss2), stage\ (Placenta Stage), and placenta and\ decidua cells (Placenta Mat/Fet,\ Placenta Mat/Fet Ss2). The default tracks\ displayed are Placenta Cells,\ Placenta Loc,\ Placenta Loc Ss2, and\ Placenta Mat/Fet Ss2.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| muscle | |
| trophoblast | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Placenta Cells and\ Placenta Cells Ss2\ subtracks, where the bars represent relatively pure cell types. They can give an overview of \ the cell composition within other categories in other subtracks as well.
\ \Method
\\ Tissue was collected from 5 placentas (6-14 gestational weeks) and 11 deciduas.\ Additionally, blood was drawn from 6 of the donors (D4-D9) and enriched for\ PBMCs using a Ficoll-Paque gradient. Decidual and placental tissue were both\ first macroscopically separated. Decidual tissue was then chopped before\ enzymatic dissociation. Placental villi was scraped from the chorionic membrane\ before enzymatic dissociation. Decidual and blood cells were enriched for\ certain populations using an antibody panel prior to Smart-seq2 library\ preparation. Cells from blood decidua and placenta were enriched using FACS\ prior to 10x Genomics v2 library preparation. Smart-seq2 libraries were\ sequenced on an Illumina HiSeq2000. 10x libraries were sequenced on an Illumina\ HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Roser Vento-Tormo, Mirjana Efremova, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Jairo Navarro. The UCSC \ work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \ singleCell 0 group singleCell\ longLabel Placenta and decidua cells from from Vento-Tormo et al 2018\ shortLabel Placenta Vento-Tormo\ superTrack on\ track placentaVentoTormo\ visibility hide\ platinumGenomes Platinum Genomes vcfTabix Platinum genome variants 0 100 0 0 0 127 127 127 0 0 0Description
\\ These tracks show high-confidence "Platinum Genome" variant calls for two individuals,\ NA12877 and NA12878, part of a sequenced 17 member pedigree for family number\ 1463, from the Centre d'Etude du Polymorphisme Humain (CEPH). The hybrid\ track displays a merging of the NA12878 results with variant calls produced by Genome in a\ Bottle, discussed further below. CEPH is an international genetic research center that provides\ a resource of immortalized cell cultures used to map genetic markers, and pedigree 1463\ represents a family lineage from Utah of four grandparents, two parents, and 11 children.\ The whole pedigree was sequenced to 50x depth on a HiSeq 2000 Illumina system, which is\ considered a platinum standard, where platinum refers to the quality and completeness of\ the resulting assembly, such as providing full chromosome scaffolds with phasing and\ haplotypes resolved across the entire genome.
\
\ This figure depicts the pedigree of the family sequenced for this study, where the ID for each\ sample is defined by adding the prefix NA128 to each numbered individual, so that 77 = NA12877\ and 78 = NA12878, corresponding to the VCF tracks available in this track set. The dark orange\ individuals indicate sequences used in the analysis methods, whereas the blue represent the\ founder generations (grandparents), which were also sequenced and used in validation steps.\ The genomes of the parent-child trio on the top right side, 91-92-78, were also sequenced\ during Phase I of the 1000 Genomes Project.
\\ These tracks represent a comprehensive genome-wide set of phased small variants that have been\ validated to high confidence. Sequencing and phasing a larger pedigree, beyond the two parents\ and one child, increases the ability to detect errors and assess the accuracy of more of the\ variants compared to a standard trio analysis. The genetic inheritance data enables creating a more\ comprehensive catalog of "platinum variants" that reflects both high accuracy and\ completeness. These results are significant as a comprehensive set of valid\ single-nucleotide variants (SNVs) and insertions and deletions (indels),\ in both the easy and difficult parts of the genome, provides a vital resource for software\ developers creating the next generation of variant callers, because these are the areas where\ the current methods most need training data to improve their methods. Since every one of the\ variants in this catalog is phased, this data set provides a resource to better assess emerging\ technologies designed to generate valid phasing information. To generate the calls, six analysis\ pipelines to call SNVs and indels were used and merged into one catalog, where the sensitivity of\ the genetic inheritance aided to detect genotyping errors and maximize the chance of only\ including true variants, that might otherwise be removed by suboptimal filtering. Read more\ about the detailed methods in the referenced paper, further describing this variant catalog\ of 4.7 million SNVs plus 0.7 million small (1-50 bp) indels, that are all consistent with\ the pattern of inheritance in the parents and 11 children of this pedigree.
\\ The hybrid track in this set extends the characterization of NA12878\ by incorporating high confidence calls produced by Genome in a Bottle analysis.\ The resulting merged files contain more comprehensive coverage of variation than either\ set independently, for instance, the hg19 version contains over 80,000 more indels than\ either input set. Read more about the hybrid methods at the following link:\ https://github.com/Illumina/PlatinumGenomes/wiki/Hybrid-truthset
\ \Data Access
\\
The VCF files for this track can be obtained from the download server:\
\
https://hgdownload.soe.ucsc.edu/gbdb/hg38/platinumGenomes/.
\
These files were obtained from the Platinum genomes source archive:\
https://s3.eu-central-1.amazonaws.com/platinum-genomes/2017-1.0/ReleaseNotes.txt.\
Reference
\ \\
Eberle MA, Fritzilas E, Krusche P, Källberg M, Moore BL, Bekritsky MA, Iqbal Z, Chuang HY,\
Humphray SJ, Halpern AL et al.\
\
A reference data set of 5.4 million phased human variants validated by genetic inheritance from\
sequencing a three-generation 17-member pedigree.\
Genome Res. 2017 Jan;27(1):157-164.\
PMID: 27903644; PMC:
Description
\\ This supertrack is a collection of gene prediction tracks and is composed of the following tracks:\
\- \
- AUGUSTUS \
- \ shows ab initio predictions from the program\ AUGUSTUS\ (version 3.1). The predictions are based on the genome sequence alone. \
- Geneid Genes \
- \ shows gene predictions from the\ geneid\ program. Geneid is a program to predict genes in anonymous genomic sequences designed with a\ hierarchical structure. \
- Genscan Genes \
- \ shows predictions from the\ Genscan\ program. The predictions are based on transcriptional, translational and donor/acceptor\ splicing signals as well as the length and compositional distributions of exons, introns and\ intergenic regions. \
- SGP Genes \
- \ shows gene predictions from the\ SGP2 homology-based gene\ prediction program. To predict genes in a genomic query, SGP2 combines geneid predictions with\ tblastx comparisons of the genome of the target species against genomic sequences of other\ species (reference genomes) deemed to be at an appropriate evolutionary distance from the\ target. \
- SIB Genes \
- \ a transcript-based set of gene predictions based on data from RefSeq and\ EMBL/GenBank. The track includes both protein-coding and non-coding transcripts. The coding\ regions are predicted using\ ESTScan. \
\ More information about display conventions, methods, credits, and references can be found on each\ subtrack's description page.
\ genes 1 cartVersion 2\ group genes\ html ../genePredArchive\ longLabel Gene Prediction Archive\ shortLabel Prediction Archive\ superTrack on\ track genePredArchive\ type genePred\ visibility hide\ primateAi PrimateAI-3D bigBed 9 + PrimateAI-3D Pathogenicity Predictions for Missense Variants 1 100 0 0 0 127 127 127 0 0 0Description
\\ PrimateAI-3D is a\ semi-supervised 3D convolutional neural network that predicts the pathogenicity of all\ possible missense variants in the human genome. It was trained on 4.5 million benign\ missense variants: 4.3 million common variants from 809 non-human primate individuals\ across 233 species, plus common human variants (>0.1% allele frequency) from gnomAD,\ TOPMed, and UK Biobank. These represent about 6% of all possible human missense variants.\
\ \\ The model operates on voxelized protein structures at 2 Å resolution (from\ AlphaFold or homology models) combined with multiple sequence alignments from 592 species.\ It uses three complementary loss functions: benign variant classification, 3D\ fill-in-the-blank prediction on masked amino acids, and a language model ranking component.\ This track shows 70.7 million scored variants across all protein-coding genes.\
\ \Display Conventions
\\
Each variant is colored blue (benign) or\
red (pathogenic) based on the Illumina-provided\
Prediction field. Because the three possible alternate bases at a given\
position sometimes produce the same amino acid change (codon degeneracy),\
each item is labeled by default with its nucleotide change (e.g. C>T)\
rather than its amino acid change. The label can be switched to the amino acid\
change via the "Label fields" control in the Track Settings.\
\ Hovering over a variant shows:\
\- \
- Var — the nucleotide substitution on the + strand\ (reference > alternate) \
- AA — the resulting amino acid change\ (single-letter reference > alternate) \
- Score — the raw PrimateAI-3D pathogenicity score (0–1).\ The authors suggest a clinical threshold of 0.821 for\ distinguishing pathogenic from benign missense variants. In Gao\ et al. 2023 (Fig. 5A) this threshold was derived from the\ Deciphering Developmental Disorders (DDD) neurodevelopmental\ cohort: the cutoff was chosen so that the number of variants\ scored as pathogenic (n = 7,238) matched the observed\ excess of de novo missense mutations above the trinucleotide\ background expectation in that cohort. \
- Perc — the percentile rank of the raw score across all\ scored variants (0–1). The track score field (0–1000) is this\ value scaled by 1000. \
- Pred — Illumina's binary call:\ benign or\ pathogenic, as provided in the\ source file. About 75% of variants in the track are benign and 25%\ pathogenic. Note that this call is not a simple application\ of the 0.821 raw-score threshold — some variants with raw\ scores below 0.821 are labeled pathogenic and vice versa. \
\ Items can be filtered by prediction (benign/pathogenic), by raw PrimateAI-3D\ score, or by percentile.\
\ \Data Access
\\
Due to the data license, the Table Browser, Data Integrator, and the REST API's\
getData endpoint are disabled for this track. The source data can be\
downloaded from the\
PrimateAI-3D website\
(requires registration). The primate variant database is available at\
PrimAD.\
Our Zoonomia 447-way Mammal/Primate alignment\
track displays the primate variants used in training PrimateAI-3D.\
Methods
\\ The PrimateAI-3D hg38 site list was downloaded from the Illumina BaseSpace website.\ The tab-separated file contains pre-computed scores for all possible single nucleotide\ missense variants. Positions were formatted as bigBed. The percentile score was put into\ the track score field (scaled to 0-1000). No filtering was applied; all 70.7 million\ scored variants are included.\ A conversion script is available from\ our Github.\
\ \Credits
\\ Thanks to Illumina, in particular Gao Hong, for making PrimateAI-3D predictions publicly available.\
\ \References
\\
Gao H, Hamp T, Ede J, Schraiber JG, McRae J, Singer-Berk M, Yang Y, Dietrich ASD, Fiziev PP, Kuderna\
LFK et al.\
\
The landscape of tolerated genetic variation in humans and primates.\
Science. 2023 Jun 2;380(6648):eabn8153.\
PMID: 37262156; PMC:
\
Sundaram L, Gao H, Padigepati SR, McRae JF, Li Y, Kosmicki JA, Fritzilas N, Hakenberg J, Dutta A,\
Shon J et al.\
\
Predicting the clinical impact of human mutation with deep neural networks.\
Nat Genet. 2018 Aug;50(8):1161-1170.\
PMID: 30038395; PMC:
Description
\ \\ This container track helps call out sections of the genome that often cause problems or\ confusion when working with the genome. The hg19 genome has a track with the same name, but with\ more subtracks, as the GeT-RM and Genome-in-a-Bottle artifact variants do not exist \ for hg38.\ \
Problematic Regions
\\ The Problematic Regions track contains the following subtracks:\
- \
- \ The UCSC Unusual Regions subtrack contains annotations collected at UCSC, \ put together from other tracks, our experiences and support email list\ requests over the years. For example, it contains the most well-known gene\ clusters (IGH, IGL, PAR1/2, TCRA, TCRB, etc) and annotations for the GRC\ fixed sequences, alternate haplotypes, unplaced\ contigs, pseudo-autosomal regions, and mitochondria. These loci can yield alignments with\ low-quality mapping scores and discordant read pairs, especially for short-read sequencing data.\ The data set was manually curated, based on the Genome Browser's\ assembly description, the FAQs about assembly, and the\ NCBI RefSeq "other" annotations\ track data.\ \ \
- \ The ENCODE Blacklist subtrack contains a comprehensive set of regions which are troublesome\ for high-throughput Next-Generation Sequencing (NGS) aligners. These regions tend to have a very\ high ratio of multi-mapping to unique mapping reads and high variance in mappability due to\ repetitive elements such as satellite, centromeric and telomeric repeats. \ \ \
- \ The GRC Exclusions subtrack contains a set of regions that have been flagged by the GRC to\ contain false duplications or contamination sequences. The GRC has now removed these sequences from\ the files that it uses to generate the reference assembly, however, removing the sequences from the\ GRCh38/hg38 assembly would trigger the next major release of the human assembly. In order to\ help users recognize these regions and avoid them in their analyses, the GRC have produced a masking\ file to be used as a companion to GRCh38, and the BED file is available from the\ GenBank FTP site.\ \
Highly Reproducible Regions (HighRepro)
\\ The Highly Reproducible Regions track highlights regions and variants\ from eight samples that can be used to assess variant detection pipelines. The\ "Highly Reproducible Regions" subtrack comprises the intersection of the reproducible\ regions across all eight samples, while the "Variants" subtracks contain the reproducible\ variants from each assayed sample. Both tracks contain data from the following samples:\
\- \
- a Chinese Quartet, samples CQ-5, CQ-6, CQ-7, CQ-8 \
- a HapMap Trio, samples NA10385, NA12248, NA12249 \
- a Genome in a Bottle sample, NA12878s \
GIAB Problematic Regions
\The Genome in a Bottle (GIAB) Problematic Regions tracks provide stratifications of the\ genome to evaluate variant calls in complex regions. It is designed for use with Global Alliance\ for Genomic Health (GA4GH) benchmarking tools like\ hap.py\ and includes regions with low complexity, segmental duplications, functional regions,\ and difficult-to-sequence areas. Developed in collaboration with GA4GH, the\ Genome in a Bottle (GIAB) consortium, and the\ Telomere-to-Telomere Consortium (T2T), the dataset aims to standardize the\ analysis of genetic variation by offering pre-defined BED files for stratifying true and false\ positives in genomic studies, facilitating accurate assessments in complex areas of the genome.
\ \\ The creation of the GIAB Problematic Regions tracks involves using a pipeline and configuration to\ generate stratification BED files that categorize genomic regions based on specific challenges,\ such as low complexity or difficult mapping, to facilitate accurate benchmarking of variant calls.\ For more information on the pipeline and configuration used, please visit the following webpage:\ \ https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/genome-stratifications/v3.5/README.md.\ If you have questions or comments, please write to Justin Zook (jzook@nist.gov).
\ \Panmask Easy 151b Regions
\\ The Panmask Easy 151b Regions subtrack contains a set of sample-agnostic easy regions where\ short-read variant calling reaches high accuracy. Easy regions are derived for variant filtration\ agnostic to individual samples. They are genomic intervals where general variant callers achieve\ high accuracy without sophisticated filtering.
\\ A set of easy regions for ancient DNA variant filtering was generated by selecting 35-mers that\ could not be mapped elsewhere within one mismatch or gap. Read alignments from multiple samples\ were inspected to exclude regions with excessively high or low coverage or those enriched with\ low mapping quality alignments. The easy regions generated through this k-mer uniqueness procedure\ are referred to as pm151:lenient, where "pm" stands for panmask. In addition, low\ complexity regions identified by SDUST were removed.
\The pm151 regions are used to filter spurious variant calls in centromeres, long repeats, and\ other genomic regions where short-read mapping is often problematic. They cover 88.2% of hg38,\ 92.2% of coding regions, and 96.3% of ClinVar pathogenic variants. The track can be used to filter\ variant calls for clinical or research human samples. Like the HighRepro track in this container\ (see above), it shows regions that are easy to sequence, not those that are problematic. The data\ was derived from the HPRC assemblies, and this track presents the 151b-easy panmask set.
\ \Display Conventions and Configuration
\ \\ Each track contains a set of regions of varying length with no special configuration options. \ The UCSC Unusual Regions track has a mouse-over description, all other tracks have at most\ a name field, which can be shown in pack mode. The tracks are usually kept in dense mode.\
\ \\ The Hide empty subtracks control hides subtracks with no data in the browser window.\ Changing the browser window by zooming or scrolling may result in the display of a different\ selection of tracks.\
\ \Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator.\ \
\
For automated download and analysis, the genome annotation is stored in bigBed files that\
can be downloaded from\
our download server.\
Individual\
regions or the whole genome annotation can be obtained using our tool bigBedToBed\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g. \
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/problematic/comments.bb -chrom=chr21 -start=0 -end=100000000 stdout
\
Methods
\ \\ Files were downloaded from the respective databases and converted to bigBed format.\ The procedure is documented in our\ hg38 makeDoc file.\
\ \Credits
\\ Thanks to Anna Benet-Pagès, Max Haeussler, Angie Hinrichs, Daniel Schmelter, and Jairo\ Navarro at the UCSC Genome Browser for planning, building, and testing these tracks. The\ underlying data comes from the\ ENCODE Blacklist and some parts were copied manually from the HGNC and NCBI\ RefSeq tracks.\
\ \References
\\
Amemiya HM, Kundaje A, Boyle AP.\
\
The ENCODE Blacklist: Identification of Problematic Regions of the Genome.\
Sci Rep. 2019 Jun 27;9(1):9354.\
PMID: 31249361; PMC:
\
Dwarshuis N, Kalra D, McDaniel J, Sanio P, Alvarez Jerez P, Jadhav B, Huang WE, Mondal R, Busby B,\
Olson ND et al.\
\
The GIAB genomic stratifications resource for human reference genomes.\
Nat Commun. 2024 Oct 19;15(1):9029.\
PMID: 39424793; PMC:
\
Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA,\
Tezak Z, Lababidi S et al.\
\
Best practices for benchmarking germline small-variant calls in human genomes.\
Nat Biotechnol. 2019 May;37(5):555-560.\
PMID: 30858580; PMC:
\
Li H.\
\
Finding easy regions for short-read variant calling from pangenome data.\
ArXiv. 2025 Aug 8;.\
PMID: 40799803; PMC:
\
Pan B, Ren L, Onuchic V, Guan M, Kusko R, Bruinsma S, Trigg L, Scherer A, Ning B, Zhang C et\
al.\
\
Assessing reproducibility of inherited variants detected with short-read whole genome\
sequencing.\
Genome Biol. 2022 Jan 3;23(1):2.\
PMID: 34980216; PMC:
Description
\\ PromoterAI is a deep neural network from Illumina that predicts the\ expression-altering impact of single nucleotide variants in gene promoter regions.\ It scores all possible substitutions within 500 bp of annotated transcription start\ sites (TSS), covering approximately 39.5 million genomic positions across all\ protein-coding genes.\
\ \\ Scores range from -1 to 1. A negative score is a predicted decrease in\ expression of the target gene; a positive score is a predicted increase\ in expression. Scores near zero indicate the variant is predicted to leave expression\ unchanged. Variants at either end of the range (large |score|) are dysregulating and\ are the ones enriched among patients with rare disease in the PromoterAI paper.\
\ \\ Illumina's PromoterAI\ GitHub page recommends three tiered thresholds for interpretation:\ |score| ≥ 0.1, |score| ≥ 0.2, and |score| ≥ 0.5.\ Higher absolute thresholds select progressively smaller, higher-confidence sets of\ predicted expression-altering variants.\
\ \Display Conventions
\\ This track is a composite with four bigWig subtracks, one for each possible alternate\ allele (A, C, G, T). When zoomed in, the exact PromoterAI score for each possible\ mutation is shown on mouseover. At wider zooms multiple data points fall into a single\ pixel and averaging scores is not biologically meaningful, so the mouseover displays\ "zoom in to see values" until you zoom in far enough that individual values\ can be shown.\
\ \\ A fifth subtrack ("PromoterAI overlaps") shows positions where overlapping\ transcripts produce different scores for the same variant. At these positions, the\ bigWig subtracks show the score with the largest absolute value, while the overlap\ track lists every per-transcript score. About 3.8% of variant positions have\ overlapping transcripts with differing scores; for more than 60% of these, the\ difference is smaller than 0.01. A filter, active by default, hides entries whose\ per-transcript score range is smaller than 0.01. The filter can be adjusted or turned\ off on the track configuration page.\
\ \\ Across all subtracks, coloring follows the direction of the predicted effect:\ red (bars above the zero line in the bigWigs,\ or filled boxes in the overlap subtrack) indicates predicted over-expression (positive\ score), and blue (bars below zero or filled\ boxes) indicates predicted under-expression (negative score).\
\ \Data Access
\\ The PromoterAI predictions are distributed by Illumina under a license that does not\ permit redistribution, so this track is not available for bulk download from UCSC and\ is excluded from the Table Browser and public API. The original prediction files are\ available for academic and non-commercial research use directly from Illumina:\ complete the license agreement linked from the\ PromoterAI GitHub\ page, and a download link is emailed after submission.\
\ \Methods
\\ The PromoterAI hg38 TSS-500 file was downloaded from Illumina via the PromoterAI\ license agreement. The file\ contains pre-computed scores for all possible single nucleotide substitutions within\ 500 bp of annotated TSS positions. For positions covered by multiple transcripts,\ the score with the largest absolute value was used for the bigWig tracks. Positions\ where transcripts produced different scores (4.45M of 118.6M unique variants, 3.8%)\ were additionally written to a bigBed overlap track with per-transcript detail\ (transcript IDs, per-transcript scores, strand, and the maximum pairwise score\ difference). The conversion script is available from\ our Github.\
\ \Credits
\\ Thanks to Kishore Jaganathan and colleagues at Illumina for making the PromoterAI\ predictions publicly available for academic and non-commercial research.\
\ \References
\\ Jaganathan K, Ersaro N, Novakovsky G, Wang Y, James T, Schwartzentruber J, Fiziev P,\ Kassam I, Cao F, Hawe J et al.\ \ Predicting expression-altering promoter mutations with deep learning.\ Science. 2025 Aug 7;389(6760):eads7373.\ PMID: 40440429\
\ phenDis 0 compositeTrack on\ longLabel PromoterAI Promoter Variant Impact Scores (zoom for exact score)\ parent predictionScoresSuper\ pennantIcon New red ../goldenPath/newsarch.html#050126 "Released May 1, 2026"\ shortLabel PromoterAI\ tableBrowser off\ track promoterAi\ type bigWig\ visibility hide\ gnomADPextProstate Prostate bigWig 0 1 gnomAD pext Prostate 0 100 221 221 221 238 238 238 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Prostate.bw\ color 221,221,221\ longLabel gnomAD pext Prostate\ parent gnomadPext off\ shortLabel Prostate\ track gnomADPextProstate\ visibility hide\ wgEncodeReg4TxnAllProstateMinus Prostate - (all biosamples) bigWig Avg. - strand total RNA-seq level of 4 prostate experiments (all biosamples) 0 100 140 140 140 197 197 197 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/prostateMinus.bw\ color 140,140,140\ longLabel Avg. - strand total RNA-seq level of 4 prostate experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 100\ shortLabel Prostate - (all biosamples)\ track wgEncodeReg4TxnAllProstateMinus\ type bigWig\ pseudogenes Pseudogenes bigbed Pseudogenes and Parents 0 100 0 0 0 127 127 127 0 0 0Description
\\ These tracks contain pseudogene predictions and their parents as identified by PseudoPipe.\ PseudoPipe is a homology-based\ computational pipeline that can search a mammalian genome and identify pseudogene sequences\ comprehensively and consistently.\
\\ Pseudogenes are genomic sequences that bear similarity to specific protein-coding genes, but are\ unable to produce functional proteins due to the existence of frameshifts, premature stop codons, or\ other deleterious mutations. They arise from gene duplication or retrotransposition events and are\ important resources in understanding the evolutionary history of genes and genomes.
\ \Display Conventions
\ \This composite track consists of two subtracks: the Pseudogenes track and the Pseudogene\ Parents track.
\\ The Pseudogene Parents track displays parent genes and pseudogenes\ labeled with their HUGO\ IDs, which were derived from Ensembl gene IDs provided by the Gerstein lab after dataset creation. It includes indicators for pseudogenes. \ These indicators do not show pseudogene locations directly but instead indicate how many pseudogenes\ are associated with each gene and link to their genomic regions in the Pseudogenes track.
\\ The Pseudogenes track shows pseudogenes labeled with their parent HUGO ID and colored\ according to pseudogene type. The authors assigned PGOHUMG IDs to genes and PGOHUMT IDs to\ transcripts. Note: Not all PseudoPipe IDs could be mapped back to their original Ensembl\ IDs. In these cases, the gene ID is listed as NA.
\ \ Pseudogene types:\- \
- Unspecified pseudogenes include pseudogenic fragments and protein/chromosome homologies\ \ with high sequence similarity but are too decayed to be reliably classified as processed or\ \ duplicated. \
- Processed pseudogenes (retrotransposed pseudogenes) result from the reverse\ \ transcription of mRNA into DNA, which is then inserted into the genome. These pseudogenes\ \ lack introns, often have small flanking direct repeats, and may retain a 3' polyadenine\ \ tail. PseudoPipe distinguishes them from duplicated pseudogenes by a combination of these\ \ features, with the emphasis on the evidence of ancient introns. \
- Unprocessed pseudogenes (duplicated pseudogenes) arise from genomic DNA duplication or\ \ unequal crossing-over. They often retain the original exon-intron structures of the\ \ functional genes, although sometimes incompletely. \
Pseudogene Parents track
\Each parent gene is shown with associated pseudogenes represented as grey blocks. These blocks\ do not reflect actual pseudogene locations but rather indicate the count of pseudogenes linked to\ the gene.\
\- \
- purple - parent gene \
- grey - pseudogene indicators \
\ If a parent gene has four grey blocks beneath it, this indicates the presence of four pseudogenes\ elsewhere in the genome. Hovering over an item displays the gene type, ID (Ensembl transcript ID\ or PseudoPipe transcript ID), and the genome position of the gene or pseudogene, with a link to\ that genomic region.\
\ \Pseudogenes track
\Pseudogenes are colored by type.
\- \
- orange - unspecified pseudogene \
- blue - unprocessed pseudogene \
- olive green - processed pseudogene \
\ Hovering over a pseudogene item shows the pseudogene type, parent HUGO gene symbol, and the Ensembl\ parent transcript ID, which links to the genome position of the parent gene.
\ \Methods
\\ The PseudoPipe pipeline identifies pseudogenes through a series of steps. It first uses BLAST to\ rapidly cross-reference potential parent proteins against the intergenic regions of the genome. The\ resulting raw hits are then processed by removing redundancies, clustering neighboring sequences,\ and aligning each cluster with a unique parent gene. Finally, pseudogenes are classified based on a\ combination of criteria, including homology, intron-exon structure, and the presence of stop codons\ or frameshifts. This method is designed to detect pseudogenes that are unable to be translated into\ proteins.
\\ These tracks were generated using a Bash script that processes a GTF file with pseudogene\ annotations by removing duplicates, correcting overlapping exons, and converting the data to BED\ format with pseudoPipeToBed.py. This script extracts gene and transcript IDs, merges overlapping\ exons, assigns colors based on pseudogene type, and outputs a BED file with gene and parent\ annotations. PseudoPipeParents.py then links pseudogenes to their functional genes by determining\ parent gene coordinates, updating pseudogene entries with interactive browser links and generating a\ parent BED file. The final data are formatted into pseudoPipePgenes.bb and pseudoPipeParents.bb BigBed\ files. The detailed documentation (makeDoc) and \ Python scripts are available in our GitHub repository.\
\ \Data Access
\The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ The data may also be explored interactively using our\ REST API.
\For automated download and analysis, the genome annotation is stored at UCSC in bigBed files\ that can be downloaded from the\ download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system.
\\ Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/hg38/pseudogenes/pseudoPipePgenes.bb -chrom=chr21 -start=0 -end=10000000 stdout\ \ \Credits
\Thanks to the Gerstein lab at Yale University for making this data available, and to Cristina\ Sisu for providing data in GTF format with parent annotations.
\ \References
\\ Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M.\ \ PseudoPipe: an automated pseudogene identification pipeline.\ Bioinformatics. 2006 Jun 15;22(12):1437-9.\ PMID: 16574694\
\ genes 1 compositeTrack on\ group genes\ html pseudogenes.html\ longLabel Pseudogenes and Parents\ noScoreFilter on\ shortLabel Pseudogenes\ track pseudogenes\ type bigbed\ visibility hide\ pubtator PubTator Variants bigBed 9 + dbSNP variants and other genetic variants grounded to dbSNP by tmVar; collected by PubTator3 1 100 0 0 0 127 127 127 0 0 0Description
\The tracks that are listed here contain genetic variants and links to scientific publications that \ mention them.
\- \
- The Mastermind track, created by Genomenon, has been retired at the\ request of the data provider and is no longer updated or displayed. \
- The VarChat \ track was created by enGenome and links to its proprietary \ software, VarChat, with an unknown false positive rate. \
- The AVADA track was created in the Bejerano lab at\ Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning\ methods and was evaluated to have a false positive rate of around 50% in their study. \
- The PubTator rsIDs track was created using \ PubTator 3 data. \
- The Varaico tracks were created using literature mining in a fashion similar to AVADA. Coloring\ is a gradient between blue and red, and represent the number of publications per variant. See\ the Varaico website for more details. \
\ For additional information please click on the hyperlink of the respective track above.\
Display conventions
\\ By default, each variant is labeled with the nucleotide change. Hover over the\ feature to see more information, explained on the track details page of the particular track\ or when clicking onto the feature.
\Credits
\\ For data provenance, access and descriptions, please click the documentation via the link above.\
\ phenDis 1 bigDataUrl /gbdb/hg38/pubs2/pubtatorDbSnp.bb\ exonNumbers off\ html varsInPubs\ itemRgb on\ longLabel dbSNP variants and other genetic variants grounded to dbSNP by tmVar; collected by PubTator3\ mouseOver $name found in ${numPubmedIds} PubMed articles\ noScoreFilter on\ parent varsInPubs pack\ shortLabel PubTator Variants\ track pubtator\ type bigBed 9 +\ urls pubmedIds="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility dense\ per_expr_reads_view Reads bam Capture long-seq long-read lncRNAs 4 100 0 0 0 127 127 127 0 0 0 rna 1 longLabel Capture long-seq long-read lncRNAs\ parent clsLongReadRnaTrack on\ shortLabel Reads\ track per_expr_reads_view\ type bam\ view per_expr_reads_view\ visibility squish\ hprcArrV1 Rearrangements bigBed 9 + Rearrangements including indels, inversions, and duplications 0 100 0 0 0 100 50 0 0 0 0Description
\ \\ This track shows various rearrangements in the HPRC assemblies with respect to hg38. The types include indels, duplications, inversions, and other more complicated \ rearrangements. There are five tracks in the Rearrangement composite track:\ \
- \
- Insertions in hg38 with respect to the HPRC genomes\
- Deletions in hg38 with respect to the HPRC genomes\
- Inversion in hg38 with respect to the HPRC genomes\
- Duplications in the HPRC genomes with respect to hg38\
- Other Rearrangements: Unalignable sequences in both genomes (inversions, partial transpositions) \
Display Conventions
\\ All items are labeled by the number of HPRC assemblies that have the rearrangement. The indel tracks have one or \ two additional fields that specify how large the indel is in base pairs. \ For the Insertions and Deletions track there's only one number with "bp" after it. \ For insertions, it is the size of the insertion in hg38. \ For deletions, it is the size of the sequence deleted in hg38. \ For the Other Rearrangements track, there are two numbers given: the number of unaligned \ bases in hg38 and the number of unaligned bases in the HPRC assemblies.\
Methods
\\ All these tracks are built from the HPRC chains and nets. \ The actual instructions used to create these tracks are in the files hprcRearrange.txt and hprcInDel.txt.\ The first step for all the tracks is to find the orthologous sequences in each HPRC assembly for each chromosome in hg38. \ These sequences are called the query sequences. For each query sequence, we select the \ longest chain to the hg38 sequence. This is called the orthologous chain. \ Following are the specific methods for each track.\
Insertions, Deletions, and Others
\ In each orthologous chain we look for any gaps in either the reference or the query sequence. There are two basic types of gaps. \ One type is when the gap contains no bases in one of the two sequences, but one or more unaligned bases in the other. \ These indicate a standard insertion in one sequence or a deletion in the other. There are also gaps where there are \ unaligned bases in both sequences. These may be alignment errors or sites where more than one rearrangement occurred between the two sequences.\ This type of gap is in the "Other Rearrangements" track.\ This gap identification is done for each of the HPRC assemblies resulting in a set of indels that are clustered based on exact boundaries of the gap in both sequences.\ This kind of clustering often results in indels that "pile up" with a different number of inserted or deleted bases.\Inversions and Duplications
\ For each orthologous chain, we look for any other chain between the same query sequence and the sequence in hg38 that overlaps the orthologous chain.\ Each of those overlaps is determined to be either an inversion or a local duplication in the HPRC genome by\ the chainArrange utility.\ This is done for each of the HPRC assemblies resulting in a set of \ inversion/duplications that are then clustered over all the assemblies. \ The clustering is by simple overlap such that no cluster overlaps any other and is done\ by the chainArrangeCollect utility.\ \References
\ \\ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\
\ \\ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\
\ \\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\
\ \\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\
\ \ hprc 1 altColor 100,50,0\ color 0,0,0\ compositeTrack on\ filter.score 1\ filterLabel.score Minimum number of assemblies with arrangement\ group hprc\ longLabel Rearrangements including indels, inversions, and duplications\ priority 100\ shortLabel Rearrangements\ track hprcArrV1\ type bigBed 9 +\ visibility hide\ recombRate2 Recomb Rate bed Recombination rate: Genetic maps from deCODE and 1000 Genomes 0 100 0 130 0 127 192 127 0 0 0Description
\\ The recombination rate track represents calculated rates of recombination based\ on the genetic maps from deCODE (Halldorsson et al., 2019) and 1000 Genomes\ (2013 Phase 3 release, lifted from hg19). The deCODE map is more recent, has a higher \ resolution and was natively created on hg38 and therefore recommended. \ For the Recomb. deCODE average track, the recombination rates for chrX represent the female rate.\
\ \This track also includes a subtrack with all the\ individual deCODE recombination events and another subtrack with several thousand\ de-novo mutations found in the deCODE sequencing data. These two tracks are hidden by\ default and have to be switched on explicitly on the configuration page.\
\ \Display Conventions and Configuration
\\ This is a super track that contains different subtracks, three with the deCODE\ recombination rates (paternal, maternal and average) and one with the 1000\ Genomes recombination rate (average). These tracks are in \ signal graph\ (wiggle) format. By default, to show most recombination hotspots, their maximum\ value is set to 100 cM, even though many regions have values higher than 100.\ The maximum value can be changed on the configuration pages of the tracks.\
\ \\ There are two more tracks that show additional details provided by deCODE: one\ subtrack with the raw data of all cross-overs tagged with their proband ID and\ another one with around 8000 human de-novo mutation variants that are linked to\ cross-over changes.\
\ \Methods
\\ The deCODE genetic map was created at \ deCODE Genetics. It is based \ on microarrays assaying 626,828 SNP markers that allowed to identify 1,476,140 crossovers in\ 56,321 paternal meioses and 3,055,395 crossovers in 70,086 maternal meioses.\ In total, the data is based on 4,531,535 crossovers in 126,427 meioses. By\ using WGS data with 9,305,070 SNPs, the boundaries for 761,981 crossovers were\ refined: 247,942 crossovers in 9423 paternal meioses and 514,039 crossovers in\ 11,750 maternal meioses. The average resolution of the genetic map is 682 base\ pairs (bp): 655 and 708 bp for the paternal and maternal maps, respectively.\
\ \The 1000 Genomes genetic map is based on the
As with all other tracks, the data conversion commands and pointers to the\ original data files are documented in the \ makeDoc file of this track.
\ \Data Access
\\ The raw data can be explored interactively with the Table Browser, or\ the Data Integrator. For automated access, this track, like all\ others, is available via our API. However, for bulk\ processing, it is recommended to download the dataset.\
\ \\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig and bigBed\
files that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools bigWigToWig\
or bigBedToBed which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to a given range, e.g.,\
\
bigWigToBedGraph -chrom=chr17 -start=45941345 -end=45942345 http://hgdownload.soe.ucsc.edu/gbdb/hg38/recombRate/recombAvg.bw stdout\
\
\ Please refer to our\ Data Access FAQ\ for more information.\
\ \Credits
\\ This track was produced at UCSC using data that are freely available for\ the deCODE\ and 1000 Genomes genetic maps. Thanks to Po-Ru Loh at the\ Broad Institute for providing the code to lift the hg19 1000 Genomes map data to hg38.\
\ \References
\\
1000 Genomes Project Consortium., Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA,\
Hurles ME, McVean GA.\
\
A map of human genome variation from population-scale sequencing.\
Nature. 2010 Oct 28;467(7319):1061-73.\
PMID: 20981092; PMC:
\ Halldorsson BV, Palsson G, Stefansson OA, Jonsson H, Hardarson MT, Eggertsson HP, Gunnarsson B,\ Oddsson A, Halldorsson GH, Zink F et al.\ \ Characterizing mutagenic effects of recombination through a sequence-level genetic map.\ Science. 2019 Jan 25;363(6425).\ PMID: 30679340\
\ map 1 color 0,130,0\ group map\ longLabel Recombination rate: Genetic maps from deCODE and 1000 Genomes\ shortLabel Recomb Rate\ superTrack on hide\ track recombRate2\ type bed\ visibility hide\ recount3 recount3 bigBed 9 + recount3 introns 0 100 0 0 0 127 127 127 0 0 0Description
\\ Recount3 is a comprehensive resource for re-analyzing RNA-seq data. It provides uniformly processed\ RNA-seq data and associated metadata from a wide range of studies, enabling researchers to access\ and analyze gene expression data in a consistent manner. Recount3 aggregates data from multiple\ sources, including the\ Sequence Read Archive (SRA)\ and the\ Genotype-Tissue Expression (GTEx) project,\ and reprocesses it using a standardized pipeline. This allows for cross-study comparisons and\ meta-analyses, facilitating discoveries in genomics and transcriptomics. Processed recount3 data\ were integrated into the\ Snaptron system\ for indexing and querying data summaries. Recount3 is available\ at: http://rna.recount.bio.\
\\ These tracks display the recount3 intron data, including split read counts and splice junction\ motifs. For hg38, tracks are available for GTEx, TCGA, SRA, and CCLE data sources, while mm10\ includes the SRA track only.\
\ \Display Conventions
\\ Intron items are colored based on splice junction motifs and read support. Darker colors indicate\ higher read coverage. Split read counts and splice motifs are shown on mouseover.\ By default, only introns with a minimum read count of 10,000 are shown. This threshold can be\ changed on the track configuration page.\
\\ The intron items are color-coded (darker colors indicate higher coverage):\
\- \
- Sky blue: GT donors and AG acceptors (CT and AC on\ the minus strand) \
- Turquoise: GC donors and AG acceptors (CT and GC on the minus strand) \
- Orange: AT donors and AC acceptors (GT and AT on the\ minus strand) \
- Grey: Non-canonical junction motifs. These could be\ sequencing errors, polymorphisms, or very rare U12 introns. \
\ Introns can be filtered by:\
\- \
- Intron size - Length of the intron. The default range is 30 to 100,000 bases. \
- Split read count - Number of split reads supporting the intron. The default is a\ minimum of 10,000 reads. \
- Splice junction motif - The motif is specified in the form GT/AG, with\ canonical motifs in uppercase and unknown motifs in lowercase.\ The default is no filtering. \
- Strand - Filter by positive strand ('+'),\ negative strand ('-'), and/or\ unknown strand ('.'). The default is no strand filtering ('all').\ \
Methods
\\ A distributed processing system for RNA-seq data called Monorail was developed. Using Monorail,\ recount3 processed and summarized 316,443 human and 416,803 mouse RNA-seq run accessions collected\ from the Sequence Read Archive (SRA), with the human runs including large-scale consortia such as\ GTEx v8 and The Cancer Genome Atlas (TCGA).\
\\ Junction files were converted to BED format. For grayscaling total read count was log10\ transformed and multiplied by 10 to get a score between 0 and 225, which can be found\ in the BED score field.\
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ For automated analysis, the data may be queried from our\ REST API.
\\ Please refer to our\ mailing list archives\ for questions or our\ Data Access FAQ\ for more information.\
\\ The original junction files for human can be found at:\
\- \
- \ https://snaptron.cs.jhu.edu/data/gtexv2/junctions.bgz\
- \ https://snaptron.cs.jhu.edu/data/tcgav2/junctions.bgz\
- \ https://snaptron.cs.jhu.edu/data/srav3h/junctions.bgz\
- \ https://snaptron.cs.jhu.edu/data/ccle/junctions.bgz\
\ The mouse junction file is available at:\
\ \ \References
\\
Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT\
et al.\
\
recount3: summaries and queries for large-scale RNA-seq expression and splicing.\
Genome Biol. 2021 Nov 29;22(1):323.\
PMID: 34844637; PMC:
Description
\\ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in rectum\ cells where cells are grouped by cell type\ (Rectum Cells) or donor\ (Rectum Donor). The default track\ displayed is Rectum Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Rectum Donor track\ is colored by donor for improved clarity.
\ \Method
\\ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for\ 3,898 cells from two human rectum samples. Tissue samples belonged to two\ female donors diagnosed with Adenocarcinoma age 66 (Rectum-1) and age 50\ (Rectum-2). The healthy intestinal mucous membranes used for each sample were\ cut away from the tumor border in surgically removed rectal tissue.\ Additionally, the intestinal tissues were washed in Hank's balanced salt\ solution (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was\ enriched for epithelial cells through centrifugation before being dissociated\ with Tryple to obtain single-cell suspensions. RNA-seq libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten\ PE150.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in rectum\ cells where cells are grouped by cell type\ (Rectum Cells) or donor\ (Rectum Donor). The default track\ displayed is Rectum Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Rectum Donor track\ is colored by donor for improved clarity.
\ \Method
\\ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for\ 3,898 cells from two human rectum samples. Tissue samples belonged to two\ female donors diagnosed with Adenocarcinoma age 66 (Rectum-1) and age 50\ (Rectum-2). The healthy intestinal mucous membranes used for each sample were\ cut away from the tumor border in surgically removed rectal tissue.\ Additionally, the intestinal tissues were washed in Hank's balanced salt\ solution (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was\ enriched for epithelial cells through centrifugation before being dissociated\ with Tryple to obtain single-cell suspensions. RNA-seq libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten\ PE150.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track shows data from Single-cell transcriptome analysis reveals differential\ nutrient absorption functions in human intestine. Droplet-based\ single-cell RNA sequencing (scRNA-seq) was used to survey gene expression\ profiles of the epithelium in the human ileum, colon, and rectum. A total of 7\ cell clusters were identified: enterocytes (EC), goblet cells (G), paneth-like\ cells (PLC), enteroendocrine cells (EEC), progenitor cells (PRO),\ transient-amplifying cells (TA) and stem cells (SC).
\ \\ This track collection contains two bar chart tracks of RNA expression in rectum\ cells where cells are grouped by cell type\ (Rectum Cells) or donor\ (Rectum Donor). The default track\ displayed is Rectum Cells.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| epithelial | |
| secretory | |
| stem cell |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. Note that the Rectum Donor track\ is colored by donor for improved clarity.
\ \Method
\\ Using scRNA-seq, RNA profiles of intestinal epithelial cells were obtained for\ 3,898 cells from two human rectum samples. Tissue samples belonged to two\ female donors diagnosed with Adenocarcinoma age 66 (Rectum-1) and age 50\ (Rectum-2). The healthy intestinal mucous membranes used for each sample were\ cut away from the tumor border in surgically removed rectal tissue.\ Additionally, the intestinal tissues were washed in Hank's balanced salt\ solution (HBSS) to remove mucus, blood cells, and muscle tissue. The sample was\ enriched for epithelial cells through centrifugation before being dissociated\ with Tryple to obtain single-cell suspensions. RNA-seq libraries were prepared\ using 10x Genomics 3' v2 kit and sequenced on an Illumina Hiseq X Ten\ PE150.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Yalong Wang, Wanlu Song, and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Luis Nassar. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\ This track associates UCSC Genome Browser chromosome names to accession\ identifiers from the NCBI Reference Sequence Database (RefSeq).\
\ \\ The data were downloaded from the NCBI assembly database.\
\ \Credits
\The data for this track was prepared by\ Hiram Clawson.\ map 1 group map\ longLabel RefSeq Accession\ shortLabel RefSeq Acc\ track ucscToRefSeq\ type bed 4\ url https://www.ncbi.nlm.nih.gov/nuccore/$$\ urlLabel RefSeq accession:\ visibility hide\ refSeqFuncElems RefSeq Func Elems bigBed 9 + NCBI RefSeq Functional Elements 0 100 0 0 0 127 127 127 0 0 0
Description
\\ NCBI recently announced a new release of\ functional regulatory elements.\ \ NCBI is now providing \ RefSeq and \ Gene\ records for non-genic functional elements that have been described in the literature and are \ experimentally validated. Elements in scope include experimentally-verified gene regulatory \ regions (e.g., enhancers, silencers, locus control regions), known structural elements\ (e.g., insulators, DNase I hypersensitive sites, matrix/scaffold-associated regions), \ well-characterized DNA replication origins, and clinically-significant sites of DNA recombination\ and genomic instability. Priority is given to genomic regions that are implicated in human disease \ or are otherwise of significant interest to the research community. Currently, the scope of this \ project is restricted to human and mouse. The current scope does not include functional elements\ predicted from large-scale epigenomic mapping studies, nor elements based on disease-associated \ variation.
\ \Display Conventions and Configuration
\\ Functional elements are colored by Sequence Ontology (SO) term\ using the same scheme as NCBI's Genome Data Viewer:\
- \
- Regulatory elements\ (items labeled by INSDC regulatory class)\
- Protein binding sites\ (items labeled by bound moiety)\
- Mobile elements\
- Recombination features\
- Sequence features\
- Other\
Methods
\\ NCBI manually curated features in accordance with International Nucleotide \ Sequence Database Collaboration (INSDC) standards. Features that are supported by direct \ experimental evidence include at least one experiment qualifier with an evidence code (ECO ID) \ from the Evidence and Conclusion Ontology, and at least one citation from PubMed. Currently\ 971 distinct PubMed citations are included in this track. \
\ \Contact
\\ This track was made with assistance from\ Terence Murphy at NCBI.
\ \Data access
\\ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, the data may be \ queried from our REST API,\ and the genome annotations are stored in files that can be downloaded from our \ download server, with more information available on\ our blog.
\ \New Version Available
\\ Several new enhancements to the RefSeq Functional Elements dataset are available as a Public Hub.\ The hub can be found on the Public Hub page.\ The track hub was prepared by Dr. Catherine M. Farrell, NCBI/NLM/NIH with further insights discussed\ in a related NCBI blog post.
\ \References
\\
Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J,\
Landrum MJ, McGarvey KM et al.\
RefSeq: an update on mammalian reference sequences.\
Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63.\
PMID: 24259432; PMC:
\
Pruitt KD, Tatusova T, Maglott DR.\
NCBI Reference Sequence (RefSeq): a curated non-redundant\
sequence database of genomes, transcripts and proteins.\
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.\
PMID: 15608248; PMC:
Description
\\ This track represents the ReMap Atlas of regulatory regions, which consists of a\ large-scale integrative analysis of all Public ChIP-seq data for transcriptional\ regulators from GEO, ArrayExpress, and ENCODE. \
\ \\ Below is a schematic diagram of the types of regulatory regions: \
- \
- ReMap 2022 Atlas (all peaks for each analyzed data set) \
- ReMap 2022 Non-redundant peaks (merged similar target) \
- ReMap 2022 Cis Regulatory Modules \
\
\
Display Conventions and Configuration
\- \
- \ Each transcription factor follows a specific RGB color.\ \
- \ ChIP-seq peak summits are represented by vertical bars.\ \
- \
Hsap: A data set is defined as a ChIP/Exo-seq experiment in a given\
GEO/ArrayExpress/ENCODE series (e.g. GSE41561), for a given TF (e.g. ESR1), in\
a particular biological condition (e.g. MCF-7).\
Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE41561.ESR1.MCF-7).\ \
- \
Atha: The data set is defined as a ChIP-seq experiment in a given series\
(e.g. GSE94486), for a given target (e.g. ARR1), in a particular biological\
condition (i.e. ecotype, tissue type, experimental conditions; e.g.\
Col-0_seedling_3d-6BA-4h).\
Data sets are labeled with the concatenation of these three pieces of\ information (e.g. GSE94486.ARR1.Col-0_seedling_3d-6BA-4h).\ \
Methods
\\ This 4th release of ReMap (2022) presents the analysis of a total of 8,103 \ quality controlled ChIP-seq (n=7,895) and ChIP-exo (n=208) data sets from public\ sources (GEO, ArrayExpress, ENCODE). The ChIP-seq/exo data sets have been mapped\ to the GRCh38/hg38 human assembly. The data set is defined as a ChIP-seq \ experiment in a given series (e.g. GSE46237), for a given TF (e.g. NR2C2), in a\ particular biological condition (i.e. cell line, tissue type, disease state, or\ experimental conditions; e.g. HELA). Data sets were labeled by concatenating\ these three pieces of information, such as GSE46237.NR2C2.HELA. \ \
\Those merged analyses cover a total of 1,211 DNA-binding proteins\ (transcriptional regulators) such as a variety of transcription factors (TFs),\ transcription co-activators (TCFs), and chromatin-remodeling factors (CRFs) for\ 182 million peaks. \
\ \\
\
GEO & ArrayExpress
\\
Public ChIP-seq data sets were extracted from Gene Expression Omnibus (GEO) and\
ArrayExpress (AE) databases. For GEO, the query\
\
'('chip seq' OR 'chipseq' OR\
'chip sequencing') AND 'Genome binding/occupancy profiling by high throughput\
sequencing' AND 'homo sapiens'[organism] AND NOT 'ENCODE'[project]'\
\
was used to return a list of all potential data sets to analyze, which were then manually \
assessed for further analyses. Data sets involving polymerases (i.e. Pol2 and\
Pol3), and some mutated or fused TFs (e.g. KAP1 N/C terminal mutation, GSE27929)\
were excluded.\
ENCODE
\\ Available ENCODE ChIP-seq data sets for transcriptional regulators from the\ ENCODE portal were processed with the\ standardized ReMap pipeline. The list of ENCODE data was retrieved as FASTQ files from the\ ENCODE portal\ using the following filters:\
- \
- Assay: "ChIP-seq" \
- Organism: "Homo sapiens" \
- Target of assay: "transcription factor" \
- Available data: "fastq" on 2016 June 21st \
ChIP-seq processing
\\ Both Public and ENCODE data were processed similarly. Bowtie 2 (PMC3322381) (version 2.2.9) with options -end-to-end -sensitive was used to align all\ reads on the genome. Biological and technical\ replicates for each unique combination of GSE/TF/Cell type or Biological condition\ were used for peak calling. TFBS were identified using MACS2 peak-calling tool\ (PMC3120977) (version 2.1.1.2) in order to follow ENCODE ChIP-seq guidelines,\ with stringent thresholds (MACS2 default thresholds, p-value: 1e-5). An input data\ set was used when available.\
\ \ \Quality assessment
\\ To assess the quality of public data sets, a score was computed based on the\ cross-correlation and the FRiP (fraction of reads in peaks) metrics developed by\ the ENCODE Consortium (https://genome.ucsc.edu/ENCODE/qualityMetrics.html). Two\ thresholds were defined for each of the two cross-correlation ratios (NSC,\ normalized strand coefficient: 1.05 and 1.10; RSC, relative strand coefficient:\ 0.8 and 1.0). Detailed descriptions of the ENCODE quality coefficients can be\ found at https://genome.ucsc.edu/ENCODE/qualityMetrics.html. The\ phantompeak tools suite was used\ (https://code.google.com/p/phantompeakqualtools/) to compute\ RSC and NSC.\
\\ Please refer to the ReMap 2022, 2020, and 2018 publications for more details\ (citation below).\
\ \ \ \Data Access
\\ ReMap Atlas of regulatory regions data can be explored interactively with the\ Table Browser and cross-referenced with the \ Data Integrator. For programmatic access,\ the track can be accessed using the Genome Browser's\ REST API.\ ReMap annotations can be downloaded from the\ Genome Browser's download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \\ Individual BED files for specific TFs, cells/biotypes, or data sets can be\ found and downloaded on the ReMap website.\
\ \References
\ \\
Chèneby J, Gheorghe M, Artufel M, Mathelier A, Ballester B.\
\
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-\
seq experiments.\
Nucleic Acids Res. 2018 Jan 4;46(D1):D267-D275.\
PMID: 29126285; PMC:
\
Chèneby J, Ménétrier Z, Mestdagh M, Rosnet T, Douida A, Rhalloussi W, Bergon A, Lopez\
F, Ballester B.\
\
ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis\
DNA-binding sequencing experiments.\
Nucleic Acids Res. 2020 Jan 8;48(D1):D180-D188.\
PMID: 31665499; PMC:
\
Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.\
\
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory\
landscape.\
Nucleic Acids Res. 2015 Feb 27;43(4):e27.\
PMID: 25477382; PMC:
\
Hammal F, de Langen P, Bergon A, Lopez F, Ballester B.\
\
ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an\
integrative analysis of DNA-binding sequencing experiments.\
Nucleic Acids Res. 2022 Jan 7;50(D1):D316-D325.\
PMID: 34751401; PMC:
Description
\ \\ Retrotransposition is a process involving the copying of DNA by a group of\ enzymes that have the ability to reverse transcribe spliced mRNAs, and the \ insertion of these processed mRNAs back into the genome resulting\ in single-exon copies of genes and sometime chimeric genes. Retrogenes are \ mostly non-functional pseudogenes but some are functional genes that have \ acquired a promoter from a neighboring gene, or transcribed pseudogenes, and \ some are anti-sense transcripts that may impede mRNA translation.\
\ \Methods
\ \\ All mRNAs of a species from GenBank were aligned to the genome using\ lastz\ (Miller lab, Pennsylvania State University). mRNAs that aligned twice in the genome\ (once with introns and once without introns) were initially screened. Next, a series\ of features were scored to determine candidates for retrotransposition events. \ These features included position and length of the polyA tail, percent coverage of the \ retrogene alignment to the parent, degree of synteny with mouse, coverage of repetitive \ elements, number of exons that can still be aligned to the retrogene, number of putative \ introns removed at the retrogene locus and degree of divergence from the parent gene.\ Retrogenes were classified using a threshold score function that is a linear combination \ of this set of features.\ Retrogenes in the final set were selected using a score threshold based on a ROC plot\ against the Vega annotated\ pseudogenes.\
\ \Retrogene Statistics table:
\ \- \
- Expression of Retrogene: The following values are possible where\ those that are not expressed are classed as pseudogene or\ mrna: \
- pseudogene indicates that the parent gene has been annotated\ by one of NCBI's RefSeq, UCSC Genes or Mammalian Gene Collection (MGC). \
- mrna indicates that the parent gene is a spliced mrna that\ has no annotation in NCBI's RefSeq, UCSC Genes or Mammalian Gene Collection\ (MGC). Therefore, the retrogene is a product of a potentially non-annotated\ parent gene and is a putative pseudogene of that putative parent gene. \
- expressed weak indicates that there is a mRNA overlapping\ the retrogene, indicating possible transcription. noOrf indicates\ that an ORF was not identified by BESTORF. \
- expressed indicates that there is a medium level of mRNAs/ESTs\ mapping to the retrogene locus, indicating possible transcription. \
- expressed strong indicates that there is a mRNA overlapping\ the retrogene, and at least five spliced ESTs indicating probable transcription.\ noOrf indicates that an ORF was not identified by BESTORF. \
- expressed shuffle indicates that the retrogene was inserted into\ a pre-existing annotated gene. \
- Score: Weighted sum of features (mentioned above) of the potential retrogene. \
- Percent Gene Alignment Coverage (Bases Matching Parent): Shows\ the percentage of the parent gene aligning to this region. \
- Intron Count: Number of introns is the number of gaps in\ the alignment between the parent mRNA and the genome where gaps are >80 bp and\ the ratio of the mRNA alignment gap to the genome alignment gap is less than\ 30% after removing repeats. \
- Gap Count: Numer of gaps in the alignment of between the parent\ mRNA and the genome after removing repeats. Gaps are not counted if the gap on\ the mRNA side of the alignment is a similar size to the gap in the genome\ alignment. \
- BESTORF Score:\ BESTORF (written by Victor Solovyev) predicts potential open reading\ frames (ORFs) in mRNAs/ESTs with very high accuracy using a Markov chain model of coding\ regions and a probabilistic model of translation start codon potential. The score\ threshold for finding an ORF is 50 (Jim Kent, personal communication). \
- \
Break in Orthology table:
\ \\ Retrogenes inserted into the genome since the mouse/human divergence show a break\ in the human genome syntenic net alignments to the mouse genome. A break in orthology score is \ calculated and weighted before contributing to the final retrogene score. The break in orthology score\ ranges from 0-130 and it represents the portion of the genome that is missing in each species relative\ to the reference genome (human hg38) at the retrogene locus as defined by syntenic\ alignment nets. If the score is 0, there is orthologous DNA and no break in ortholog with the other species; this \ could be an ancient retrogene; duplicated pseudogenes may also score low because they are often generated \ via large segmental duplication events so the size of the pseudogene is small relative to the size of the \ inserted duplicated sequence. Scores greater than 100 represent cases where the retrogene alignment has no \ flanking alignment resulting from an ancient insertion or other complex rearrangement.\
\\ Breaks in orthology with human and dog tend to be due to genomic\ insertions in the rodent lineage so sequence gaps are not treated as orthology breaks. \ Relative orthology of human/mouse and dog/mouse nets are used to avoid false positives due to deletions \ in the human genome. Since older retrogenes will not show a break in orthology, this feature is \ weighted lower than other features when scoring putative retrogenes.\
\ \Credits
\ \\ The RetroFinder program and browser track were developed by\ Robert Baertsch at UCSC.\
\ \ \References
\ \\
Baertsch R, Diekhans M, Kent WJ, Haussler D, Brosius J.\
\
Retrocopy contributions to the evolution of the human genome.\
BMC Genomics. 2008 Oct 8;9:466.\
PMID: 18842134; PMC:
\
Kent WJ, Baertsch R, Hinrichs A, Miller W, Haussler D.\
\
Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.\
Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11484-9.\
PMID: 14500911; PMC:
\
Pei B, Sisu C, Frankish A, Howald C, Habegger L, Mu XJ, Harte R, Balasubramanian S, Tanzer A,\
Diekhans M et al.\
\
The GENCODE pseudogene resource.\
Genome Biol. 2012 Sep 26;13(9):R51.\
PMID: 22951037; PMC:
\
Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W.\
\
Human-mouse alignments with BLASTZ.\
Genome Res. 2003 Jan;13(1):103-7.\
PMID: 12529312; PMC:
\
Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE,\
Snyder M et al.\
\
Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and\
evolution.\
Genome Res. 2007 Jun;17(6):839-51.\
PMID: 17568002; PMC:
Description
\ \This track collection shows Rare Exome Variant Ensemble Learner (REVEL) scores that can be\ used as evidence for pathogenicity classifications.\
\ \\ REVEL is an ensemble method for predicting a score for missense variants \ based on a combination of scores from 13 individual tools: MutPred, FATHMM v2.3, \ VEST 3.0, PolyPhen-2, SIFT, PROVEAN, MutationAssessor, MutationTaster, LRT, GERP++, \ SiPhy, phyloP, and phastCons. REVEL was trained using recently discovered pathogenic \ and rare neutral missense variants, excluding those previously used to train its \ constituent tools. The REVEL score for an individual missense variant can range \ from 0 to 1, with higher scores reflecting greater likelihood that the variant is \ damaging.\
\ \Most authors of deleteriousness scores argue against using fixed cutoffs in\ diagnostics. But to give an idea of the meaning of the score value, the REVEL\ authors note: "For example, 75.4% of disease mutations but only 10.9% of\ neutral variants (and 12.4% of all ESVs) have a REVEL score above 0.5,\ corresponding to a sensitivity of 0.754 and specificity of 0.891. Selecting a\ more stringent REVEL score threshold of 0.75 would result in higher specificity\ but lower sensitivity, with 52.1% of disease mutations, 3.3% of neutral\ variants, and 4.1% of all ESVs being classified as pathogenic". (Figure S1 of\ the reference below)\
\ \Display Conventions and Configuration
\\ There are five subtracks for this track:\
- \
- \
Four lettered subtracks, one for every nucleotide, showing\ scores for the variant from the reference to that\ nucleotide. All subtracks show the REVEL ensemble score on mouseover. Across the exome, \ there are three values per position, one for every possible\ nucleotide variant. The fourth value, "no variant", representing\ the reference allele, e.g. A to A, is always set to zero, "0.0". REVEL only\ takes into account amino acid changes, so a nucleotide variant that predicts no\ amino acid change (synonymous) also receives the score "0.0". \
\ In rare cases, two scores are output for the same variant at a \ genome position. This happens when there are two transcripts with\ distinct splicing patterns and since some input scores for REVEL take into account\ the sequence context, the same variant can get two different scores. In these cases,\ only the maximum score is shown in the four per-nucleotide subtracks. The complete set of \ scores are shown in the Overlaps track.\
\ \ - \
One subtrack, Overlaps, shows alternate REVEL scores when applicable. \ In rare cases (0.05% of genome positions), multiple scores exist with a single variant, \ due to multiple, overlapping transcripts. For example, if there are \ two transcripts and one covers only half of an exon, then the amino acids\ that overlap both transcripts will get two distinct REVEL scores, since some of the underlying\ scores (polyPhen for example) take into account the amino acid sequence context and \ this context is different depending on the transcript.\ For these cases, this subtrack contains at least two\ graphical features, for each affected genome position. Each feature is labeled\ with the reference or variant (A, C, T, or G). The transcript IDs and resulting score is\ shown when hovering over the feature or clicking\ it. For the large majority of the genome, this subtrack has no features.\ This is because REVEL usually outputs only a single score per nucleotide and \ most transcript-derived amino acid sequence contexts are identical.\
\\ Note that in most diagnostic testing scenarios, variants are called using WGS\ pipelines, not RNA-seq. As a result, variants are originally located on the\ genome, not on transcripts, and the choice of transcript is made by\ a variant calling software using a heuristic. In addition, clinically, in the\ field, some transcripts have been agreed-on as more relevant for a disease, e.g.\ because only certain transcripts may be expressed in the relevant tissue. So\ the choice of the most relevant transcript, and as such the REVEL score, may be\ a question of manual curation standards rather than a result of the variant itself.\
\\ Note further that these thresholds represent the recommended score\ cutoffs for genes with no Variant Curation Expert Panel (VCEP) rules.\ For genes with published VCEP rules, the VCEP might\ select different thresholds, which are adjusted for the frequency of the\ relevant disorders. These are available in the ClinGen Criteria\ Specification.
\
\ When using this track, zoom in until you can see every basepair at the\ top of the display. Otherwise, there are several nucleotides per pixel under \ your mouse cursor and no score will be shown on the mouseover tooltip.\
\ \Track colors
\\ This track is colored according to Table 2 in Pejaver et al. The colors represent the recommended\ ClinGen score cutoffs.\ \
| Range | \Classification | \
|---|---|
| ≥ 0.644 | \Pathogenic supporting | \
| 0.643 - 0.291 | \Neutral | \
| ≤ 0.290 | \Benign supporting | \
\
More details on these scoring ranges can be found in Bergquist et al. Genet Med 2025, Table 2:
\
\
\
For hg38, note that the data were converted from the hg19 data using the UCSC\
liftOver program, by the REVEL authors. This can lead to missing values or\
duplicated values. When a hg38 position is annotated with two scores due to the\
lifting, the authors removed all the scores for this position. They did the same when\
the reference nucleotide has changed from hg19 to hg38. Also, on hg38, the track has\
the 
"lifted" icon to indicate\
this. You can double-check if a nucleotide\
position is possibly affected by the lifting procedure by activating the track\
"Hg19 Mapping" under "Mapping and Sequencing".\
Data access
\\ REVEL scores are available at the \ \ REVEL website. \ The site provides precomputed REVEL scores for all possible human missense variants \ to facilitate the identification of pathogenic variants among the large number of \ rare variants discovered in sequencing studies.\ \
\ \\
The REVEL data on the UCSC Genome Browser can be explored interactively with the\
Table Browser or the\
Data Integrator. The previous overlap bigBed version file is\
available in the\
archives of our downloads server.\
For automated download and analysis, the genome annotation is stored at UCSC in bigWig\
files that can be downloaded from\
our download server.\
The files for this track are called a.bw, c.bw, g.bw, t.bw. Individual\
regions or the genome annotation can be obtained using our tool bigWigToWig,\
which can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.\
The tools can also be used to obtain features confined to given range, e.g.\
\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500 http://hgdownload.soe.ucsc.edu/gbdb/hg38/revel/a.bw stdout\
\
\
Methods
\ \\ Data were converted from the files provided on\ the REVEL Downloads website. As with all other tracks,\ a full log of all commands used for the conversion is available in our \ source repository, for hg19 and hg38. The release used for each assembly is shown on the track description page.\
\ \Credits
\\ Thanks to the REVEL development team for providing precomputed data and fixing duplicated values in the hg38 files.\
\ \References
\\ Ioannidis NM, Rothstein JH, Pejaver V, Middha S, McDonnell SK, Baheti S, \ Musolf A, Li Q, Holzinger E, Karyadi D, et al.\ \ REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants\ Am J Hum Genet. 2016 Oct 6;99(4):877-885.\ PMID: 27666373;\ PMC: PMC5065685\
\ \\ Bergquist T, Stenton SL, Nadeau EAW, Byrne AB, Greenblatt MS, Harrison SM, Tavtigian SV,\ O'Donnell-Luria A, Biesecker LG, Radivojac P et al.\ \ Calibration of additional computational tools expands ClinGen recommendation options for variant\ classification with PP3/BP4 criteria.\ Genet Med. 2025 Mar 10;27(6):101402.\ PMID: 40084623\
\ \ phenDis 0 color 150,80,200\ compositeTrack on\ dataVersion /gbdb/$D/revel/version.txt\ group phenDis\ longLabel REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)\ origAssembly hg19\ pennantIcon 19.jpg ../goldenPath/help/liftOver.html "lifted from hg19"\ shortLabel REVEL Scores\ track revel\ type bigWig\ visibility hide\ sample_models_view Sample models bigBed Capture long-seq long-read lncRNAs 4 100 0 0 0 127 127 127 0 0 0 rna 1 longLabel Capture long-seq long-read lncRNAs\ noScoreFilter on\ parent clsLongReadRnaTrack\ shortLabel Sample models\ track sample_models_view\ type bigBed\ view sample_models_view\ visibility squish\ scaffolds Scaffolds bed 4 . GRCh38 Defined Scaffold Identifiers 3 100 0 0 0 127 127 127 0 0 0Description
\ \\ This track shows the Genome Reference Consortium (GRC) names for the \ scaffolds in the GRCh38 (hg38) assembly, downloaded from the GRCh38\ acc2name file in GenBank. \
\ map 1 color 0,0,0\ longLabel GRCh38 Defined Scaffold Identifiers\ shortLabel Scaffolds\ superTrack assemblyContainer pack\ track scaffolds\ type bed 4 .\ sgpGene SGP Genes genePred sgpPep SGP Gene Predictions Using Mouse/Human Homology 0 100 0 90 100 127 172 177 0 0 0Description
\ \ This track shows gene predictions from the\ SGP2\ homology-based gene prediction program developed by Roderic Guigó's\ "Computational Biology of RNA Processing"\ group, which is part of the Centre de Regulació Genòmica\ (CRG) in Barcelona, Catalunya, Spain. To predict\ genes in a genomic query, SGP2 combines geneid predictions with tblastx\ comparisons of the genome of the target species against genomic sequences\ of other species (reference genomes) deemed to be at an appropriate\ evolutionary distance from the target.\ \Credits
\ \ Thanks to the\ "Computational Biology of RNA Processing"\ group for providing these data.\ genes 1 color 0,90,100\ group genes\ html ../../sgpGene\ longLabel SGP Gene Predictions Using Mouse/Human Homology\ parent genePredArchive\ shortLabel SGP Genes\ track sgpGene\ type genePred sgpPep\ visibility hide\ hprcVCF Short Variants Short Variants 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This track shows short nucleotide variants of a few base pairs when aligning\ HPRC genomes to the hg38 reference assembly. The alignment was made with the\ Minigraph-cactus approach described in the references below.\
\ \There are three subtracks in this superTrack:\
- \
- All short variants up to 50bp, without any length filter\
- All short variants <= 3 bp long\
- All short variants > 3 bp long\
\ VCF Decomposition from\ HPRC Pangenome Resources Github:\ "The Raw VCF files contain a site for each bubble in the graph. Nested bubbles will result in\ overlapping sites. The nesting relationships are denoted with the PS (parent snarl), LV (level) and\ AT (allele traversal) tags and need to be taken into account when interpreting the VCF.\ Alternatively, you can use the 'Decomposed VCFs' which have been normalized by using\ vcfbub to 'pop'\ bubbles with alleles larger than 100k and\ vcfwave\ to realign each alt\ (script). Note that in order to reproduce the PanGenie analyses from the papers, you should instead\ use the\ PanGenie HPRC Workflow. This workflow has a\ CHM13 branch to use when working with that reference.\
\ The exact tools and commands used to produce the VCFs are given\ here."
\ \Display Conventions and Configuration
\\ The Name of the items are the pair of node labels that denote the site's location\ in the graph, with the '>' and '<' denoting the forward and reverse\ orientation of the node. Mouseover on items in "squish" and "pack" modes shows the items Name and\ Genotypes. Mouseover on items in "full" mode shows Alleles.\ \
Methods
\\ The Minigraph-Cactus HPRC v1.0 graph was converted to VCF using vg deconstruct.\ This result was further postprocessed using vcfbub to flatten nested sites then\ vcfwave to normalize by realigning alt alleles to the reference. All steps are\ described in Hickey et al 2023. The postprocessing command lines and data can be found on\ Github.\ Finally, the resulting VCF was filtered by length and split into two VCFs using a cutoff of 3bp.\
\ \Credits
\\ Thanks to Glenn Hickey for providing the HAL file from the HPRC project and for making these VCFs from them.\
\ \References
\\ Armstrong J, Hickey G, Diekhans M, Fiddes IT, Novak AM, Deran A, Fang Q,\ Xie D, Feng S, Stiller J\ et al.\ \ Progressive Cactus is a multiple-genome aligner for the thousand-genome era.\ Nature. 2020 Nov;587(7833):246-251.\ PMID: 33177663;\ PMC: PMC7673649;\ DOI: 10.1038/s41586-020-2871-y\
\ \\ Glenn Hickey, Jean Monlong, Jana Ebler, Adam M Novak, Jordan M Eizenga,\ Yan Gao; Human Pangenome Reference Consortium; Tobias Marschall, Heng Li,\ Benedict Paten\ \ Pangenome graph construction from genome alignments with Minigraph-Cactus.\ Nature Biotechnology. 2023 May 10. doi: 10.1038/s41587-023-01793-w.\ PMID: 37165083;\ DOI: 10.1038/s41587-023-01793-w\
\ \\ Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D.\ \ Cactus: Algorithms for genome multiple sequence alignment.\ Genome Res. 2011 Sep;21(9):1512-28.\ PMID: 21665927;\ PMC: PMC3166836;\ DOI: 10.1101/gr.123356.111\
\ \\ Wen-Wei Liao, Mobin Asri, Jana Ebler, ...et al, Heng Lin,\ Benedict Paten\ \ A draft human pangenome reference.\ Nature. 2023 May;617(7960):312-324.\ PMID: 37165242;\ PMC: PMC1017212;\ DOI: 10.1038/s41586-023-05896-x\
\ hprc 0 group hprc\ html hprcVCF\ longLabel Short Variants\ shortLabel Short Variants\ superTrack on\ track hprcVCF\ sibTxGraph SIB Alt-Splicing altGraphX Alternative Splicing Graph from Swiss Institute of Bioinformatics 0 100 0 0 0 127 127 127 0 0 0 http://ccg.vital-it.ch/cgi-bin/tromer/tromergraph2draw.pl?db=hg38&species=H.+sapiens&tromer=$$Description
\\ This track shows the graphs constructed by analyzing experimental RNA\ transcripts and serves as basis for the predicted alternative splicing\ transcripts shown in the SIB Genes track. The blocks represent exons; lines\ indicate introns. The graphical display is drawn such that no exons\ overlap, making alternative events easier to view when the track is in full\ display mode and the resolution is set to approximately gene-level.
\Further information on the graphs can be found on the\ Transcriptome \ Web interface.
\ \Methods
\\ The splicing graphs were generated using a multi-step pipeline: \
- \
- RefSeq and GenBank RNAs and ESTs are aligned to the genome with\ SIBsim4, keeping \ only the best alignments for each RNA.\
- Alignments are broken up at non-intronic gaps, with small isolated \ fragments thrown out.\
- A splicing graph is created for each set of overlapping alignments. This\ graph has an edge for each exon or intron, and a vertex for each splice site,\ start, and end. Each RNA that contributes to an edge is kept as evidence for\ that edge.\
- Graphs consisting solely of unspliced ESTs are discarded.\
Credits
\\
The SIB Alternative Splicing Graphs track was produced on the
Description
\\ The SIB Genes track is a transcript-based set of gene predictions based\ on data from RefSeq and EMBL/GenBank. Genes all have the support of at\ least one GenBank full length RNA sequence, one RefSeq RNA, or one spliced\ EST. The track includes both protein-coding and non-coding transcripts.\ The coding regions are predicted using\ ESTScan.
\ \Display Conventions and Configuration
\\ This track in general follows the display conventions for\ gene prediction\ tracks. The exons for putative non-coding genes and untranslated regions \ are represented by relatively thin blocks while those for coding open \ reading frames are thicker.
\\ This track contains an optional codon coloring\ feature that allows users to quickly validate and compare gene predictions.\ To display codon colors, select the genomic codons option from the\ Color track by codons pull-down menu. Go to the\ Coloring Gene Predictions and\ Annotations by Codon page for more information about this feature.
\Further information on the predicted transcripts can be found on the\ Transcriptome Web\ interface.
\ \ \Methods
\\ The SIB Genes are built using a multi-step pipeline: \
- \
- RefSeq and GenBank RNAs and ESTs are aligned to the genome with\ SIBsim4, keeping \ only the best alignments for each RNA.\
- Alignments are broken up at non-intronic gaps, with small isolated \ fragments thrown out.\
- A splicing graph is created for each set of overlapping alignments. This\ graph has an edge for each exon or intron, and a vertex for each splice site,\ start, and end. Each RNA that contributes to an edge is kept as evidence for\ that edge.\
- The graph is traversed to generate all unique transcripts. The traversal is \ guided by the initial RNAs to avoid a combinatorial explosion in alternative \ splicing.\
- Protein predictions are generated.\
Credits
\\
The SIB Genes track was produced on the
References
\\
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\
GenBank: update.\
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\
PMID: 14681350; PMC:
Description
\\
This track displays single-cell data from 12 papers covering 14 organs. Cells are grouped \
together by organ and cell type. The cell types are based on annotations published alongside\
the papers. These were curated at UCSC as much as possible to use the same cell type \
terminologies across papers and organs. In some cases, we merged together small populations\
of cells annotated as distinct and related types into a single type so as to have enough cells \
to call gene expression levels accurate.\
\
The gene expression levels are normalized so that the total level of expression for all genes in a\
single cell or cell type adds up to one million. \
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of \
transcript reads divided by the number of cells, and is therefore an average or mean value.\
Display Conventions and Configuration
\\ The cell types are colored by which class they belong to according to the following table.\
\\ Please note, the coloring algorithm allows cells that show some mixed characteristics to =\ show blended colors so there will be some color variation within a class. In addition,\ cells with less than 100 transcripts will be a lighter shade and less \ concentrated in color to represent a low number of transcripts. \ \
\
| Color | \Cell classification | \
|---|---|
| neural | |
| adipose | |
| fibroblast | |
| immune | |
| muscle | |
| hepatocyte | |
| trophoblast | |
| secretory | |
| ciliated | |
| epithelial | |
| endothelial | |
| glia | |
| stem cell or progenitor cell |
Methods
\\ Each organ or tissue was integrated and curated into the Genome Browser indiviually. \ \
- \
- \ Blood (PBMC) Hao\ - This track displays peripheral blood mononuclear cell expression data from \ Hao et al., 2020 \ for 3 levels of cell type annotations, donor, phase, and time. \
- \ Colon Wang \ - This track shows colon expression data from \ Wang et al., 2020 \ grouped by cell type and donor. \
- \ Cortex Velmeshev \ - This track shows cortex expression data from \ Velmeshev et al., 2019 \ grouped by cell type, sex, sample, donor, and diagnosis. \
- \ Fetal Gene Atlas \ - This track shows expression data from \ Cao et al., 2020 \ binned by cell type and other categories including sex, organ, experiment, donor, etc. \
- \ Heart Cell Atlas \ - This track shows heart expression data from Litviňuková et\ al., 2020 binned by cell type and various categories including cell\ state, sample, region, donor, age, etc. \
- \ Ileum Wang -\ This track shows ileum expression data from Wang et al., 2020\ grouped by cell type and donor. \
- \ Kidney\ Stewart - This track shows kidney expression data from Stewart et al.,\ 2019 grouped by cell type, detailed cell type, project, experiment, etc.\ \
- \ Liver\ MacParland - This track shows liver expression data from MacParland et al.,\ 2018 grouped by cell type, broad cell type, and donor. \
- \ Lung\ Travaglini - This track shows lung expression data from Travaglini et al.,\ 2020 binned by categories such as cell type, sample, donor, compartment,\ etc. using both 10x and Smart-seq2 library preparation methods. \
- \ Muscle De\ Micheli - This track shows muscle expression data from De Micheli et al.,\ 2020 grouped by cell type and sample. \
- \ Pancreas\ Baron - This track shows pancreas expression data from Baron et al., 2016\ grouped by cell type, detailed cell type, donor, and batch.\ \
- \ Placenta\ Vento-Tormo - This track shows placenta and matched decidua and maternal\ PBMCs expression data from Vento-Tormo et al.,\ 2018 grouped by cell type, detailed cell type, stage, etc. using both 10x\ and Smart-seq2 library preparation methods. \
- \ Rectum Wang\ - This track shows rectum expression data from Wang et al.,\ 2020 grouped by cell type and donor. \
- \ Skin\ Sole-Boldo - This track shows skin expression data from Solé-Boldo et\ al., 2020 grouped by cell type, cell type with donor's age, donor, and\ age. \
Data Access
\\
The raw barChart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array, \ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \Credits
\\ Many thanks to the data contributing labs for sharing their high quality research. \ Thanks to the Cell Browser team including Matt Speir and Max Haeussler, for their work\ in integratinging these datasets into the Cell Browser. In most cases, their efforts were\ ahead of our own and we could leverage their work making the job much easier. Within the\ Genome Browser group, Jim Kent did the initial wrangling, and Brittney Wick did substantial data\ cleanup and coordination with the labs.\
\ \References
\ \ \ \\
Baron M, Veres A, Wolock SL, Faust AL, Gaujoux R, Vetere A, Ryu JH, Wagner BK, Shen-Orr SS, Klein AM\
et al.\
\
A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell\
Population Structure.\
Cell Syst. 2016 Oct 26;3(4):346-360.e4.\
PMID: 27667365; PMC:
\
Cao J, O'Day DR, Pliner HA, Kingsley PD, Deng M, Daza RM, Zager MA, Aldinger KA, Blecher-Gonen R,\
Zhang F et al.\
\
A human cell atlas of fetal gene expression.\
Science. 2020 Nov 13;370(6518).\
PMID: 33184181; PMC:
\
Cao J, Spielmann M, Qiu X, Huang X, Ibrahim DM, Hill AJ, Zhang F, Mundlos S, Christiansen L,\
Steemers FJ et al.\
\
The single-cell transcriptional landscape of mammalian organogenesis.\
Nature. 2019 Feb;566(7745):496-502.\
PMID: 30787437; PMC:
\
De Micheli AJ, Spector JA, Elemento O, Cosgrove BD.\
\
A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated\
muscle stem cell populations.\
Skelet Muscle. 2020 Jul 6;10(1):19.\
PMID: 32624006; PMC:
\
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M\
et al.\
\
Integrated analysis of multimodal single-cell data.\
Cell. 2021 Jun 24;184(13):3573-3587.e29.\
PMID: 34062119; PMC:
\
Litviňuková M, Talavera-López C, Maatz H, Reichart D, Worth CL, Lindberg EL, Kanda M,\
Polanski K, Heinig M, Lee M et al.\
\
Cells of the adult human heart.\
Nature. 2020 Dec;588(7838):466-472.\
PMID: 32971526; PMC:
\
MacParland SA, Liu JC, Ma XZ, Innes BT, Bartczak AM, Gage BK, Manuel J, Khuu N, Echeverri J, Linares\
I et al.\
\
Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.\
Nat Commun. 2018 Oct 22;9(1):4383.\
PMID: 30348985; PMC:
\
Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\
M, Lyko F.\
\
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\
Commun Biol. 2020 Apr 23;3(1):188.\
PMID: 32327715; PMC:
\
Stewart BJ, Ferdinand JR, Young MD, Mitchell TJ, Loudon KW, Riding AM, Richoz N, Frazer GL,\
Staniforth JUL, Vieira Braga FA et al.\
\
Spatiotemporal immune zonation of the human kidney.\
Science. 2019 Sep 27;365(6460):1461-1466.\
PMID: 31604275; PMC:
\
Travaglini KJ, Nabhan AN, Penland L, Sinha R, Gillich A, Sit RV, Chang S, Conley SD, Mori Y, Seita J\
et al.\
\
A molecular cell atlas of the human lung from single-cell RNA sequencing.\
Nature. 2020 Nov;587(7835):619-625.\
PMID: 33208946; PMC:
\
Velmeshev D, Schirmer L, Jung D, Haeussler M, Perez Y, Mayer S, Bhaduri A, Goyal N, Rowitch DH,\
Kriegstein AR.\
\
Single-cell genomics identifies cell type-specific molecular changes in autism.\
Science. 2019 May 17;364(6441):685-689.\
PMID: 31097668; PMC:
\ Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E,\ Polański K, Goncalves A et al.\ \ Single-cell reconstruction of the early maternal-fetal interface in humans.\ Nature. 2018 Nov;563(7731):347-353.\ PMID: 30429548\
\ \ \\
Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen YG.\
\
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human\
intestine.\
J Exp Med. 2020 Feb 3;217(2).\
PMID: 31753849; PMC:
Description
\\
This track displays data from
\ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\
M, Lyko F.\
\
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\
Commun Biol. 2020 Apr 23;3(1):188.\
PMID: 32327715; PMC:
Description
\\
This track displays data from
\ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\
M, Lyko F.\
\
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\
Commun Biol. 2020 Apr 23;3(1):188.\
PMID: 32327715; PMC:
Description
\\
This track displays data from
\ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\
M, Lyko F.\
\
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\
Commun Biol. 2020 Apr 23;3(1):188.\
PMID: 32327715; PMC:
Description
\\
This track displays data from
\ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\
M, Lyko F.\
\
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\
Commun Biol. 2020 Apr 23;3(1):188.\
PMID: 32327715; PMC:
Description
\\
This track displays data from
\ This track collection contains four bar chart tracks of RNA expression in the\ human skin where cells are grouped by cell type \ (Skin Cell), age \ (Skin Age),\ donor \ (Skin Donor), and cell type and donor's age \ (Skin Cell+Age). The default\ track displayed is Skin Cell.
\ \Display Conventions
\\ The cell types are colored by which class they belong to according to the following table.
\ \\
| Color | \Cell classification | \
|---|---|
| fibroblast | |
| immune | |
| epithelial | |
| endothelial |
\ Cells that fall into multiple classes will be colored by blending the colors associated\ with those classes. The colors will be purest in the\ Skin Cell subtrack, where\ the bars represent relatively pure cell types. They can give an overview of the\ cell composition within other categories in other subtracks as well.
\ \Method
\\ Healthy skin samples were obtained from whole-skin specimens belonging to 5\ male donors (ages 25-70) with fair skin. Donors underwent full body skin\ examinations by a dermatologist and medical records were checked for skin\ diseases and/or comorbidities that affect the skin. 4-mm punch biopsies were\ taken from surgically removed skin belonging to the inguinal region of the body\ also known as the groin. Skin samples were kept in MACS Tissue Storage Solution\ for less than 1 hour to avoid necrosis and apoptosis. Enzymatical and\ mechanical dissociation was done using the Miltenyi Biotec Whole Skin\ Dissociation kit for human material and the Miltenyi Biotec Gentle MACS\ dissociator. Drop-seq libraries were prepared using a 10x Genomics 3' v2 kit\ and sequenced on an Illumina HiSeq4000.
\ \The cell/gene matrix and cell-level metadata was downloaded from the \ UCSC Cell Browser.\ The UCSC command line utility matrixClusterColumns, matrixToBarChart, and bedToBigBed were used\ to transform these into a bar chart format bigBed file that can be visualized. The coloring \ was done by defining colors for the broad level cell classes and then using another UCSC utility,\ hcaColorCells, to interpolate the colors across all cell types. The UCSC utilities can be found on\ our download server.
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser or the Data Integrator. For\
automated analysis, the data may be queried from our
Credit
\\ Thanks to Llorenç Solé-Boldo and to the many authors who worked on\ producing and publishing this data set. The data were integrated into the UCSC\ Genome Browser by Jim Kent and Brittney Wick then reviewed by Gerardo Perez. The \ UCSC work was paid for by the Chan Zuckerberg Initiative.
\ \References
\\
Solé-Boldo L, Raddatz G, Schütz S, Mallm JP, Rippe K, Lonsdorf AS, Rodríguez-Paredes\
M, Lyko F.\
\
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming.\
Commun Biol. 2020 Apr 23;3(1):188.\
PMID: 32327715; PMC:
Description
\\ This track displays positions of four different types of RNA in the human \ genome: \
- \
- microRNAs from the\ \ miRBase at the \ Wellcome Trust Sanger Institute(WTSI).\
- small nucleolar RNAs (C/D box and H/ACA box snoRNAs) and Cajal body-specific RNAs (scaRNAs) from the \ snoRNABase maintained at the \ \ Laboratoire de Biologie Moléculaire Eucaryote\
\ C/D box and H/ACA box snoRNAs are guides for the 2'O-ribose methylation and \ the pseudouridilation, respectively, of rRNAs and snRNAs, although many of \ them have no documented target RNA. The scaRNAs guide modifications of the\ spliceosomal snRNAs transcribed by RNA polymerase II, and often contain both \ C/D and H/ACA domains.
\ \Display Conventions and Configuration
\\ This track follows the general display conventions for \ gene prediction \ tracks.
\\ The miRNA precursor forms (pre-miRNA) are represented by red blocks.
\\ C/D box snoRNAs, H/ACA box snoRNAs and scaRNAs are represented by blue, \ green and magenta blocks, respectively. At a zoomed-in resolution, arrows \ superimposed on the blocks indicate the sense orientation of the snoRNAs.
\ \Methods
\\ Precursor miRNA genomic locations from\ \ miRBase\ were calculated using wublastn for sequence alignment with the requirement of\ 100% identity. \ The extents of the precursor sequences were not generally known and were\ predicted based on base-paired hairpin structure. miRBase is\ described in Griffiths-Jones, S. (2004) and Weber, M.J. (2005) in the \ References section below.
\\ The snoRNAs and scaRNAs from the snoRNABase were aligned against the \ human genome using blat. \
\ \Credits
\ Genome coordinates for this track were obtained from the miRBase sequences\ FTP site and from \ \ snoRNABase coordinates download page.\\ \
References
\\ When making use of these data, please cite the folowing articles in addition to\ the primary sources of the miRNA sequences:
\\ Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.\ miRBase: tools for microRNA genomics.\ Nucleic Acids Res. 2008 Jan 1;36(Database issue):D154-8.
\\ Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.\ miRBase: microRNA sequences, targets and gene nomenclature.\ Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.
\\ Griffiths-Jones S.\ The microRNA Registry.\ Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.
\\ Weber MJ.\ New human and mouse microRNA genes found by homology search.\
\ You may also want to cite The Wellcome Trust Sanger Institute \ miRBase and The Laboratoire de Biologie Moleculaire \ Eucaryote snoRNABase.
\\ The following publication provides guidelines on miRNA annotation:\ Ambros V. et al., \ A uniform system for microRNA annotation. \ RNA. 2003;9(3):277-9.
\\ genes 1 color 200,80,0\ dataVersion miRBase Release 22 (March 2018) and snoRNABase Version 3 (lifted from hg19)\ group genes\ longLabel C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase\ noScoreFilter .\ shortLabel sno/miRNA\ superTrack nonCodingRNAs pack\ track wgRna\ type bed 8 +\ url http://www-snorna.biotoul.fr/plus.php?id=$$\ url2 http://www.mirbase.org/cgi-bin/query.pl?terms=$$\ url2Label miRBase:\ urlLabel Laboratoire de Biologie Moleculaire Eucaryote:\ visibility hide\ snpedia SNPedia bed 4 SNPedia 0 100 50 0 100 152 127 177 0 0 0
Description
\ \\ SNPedia is a wiki investigating human\ genetics with information about the effects of variations in DNA, citing\ peer-reviewed scientific publications.\ \
SNPedia all: SNPedia all SNPs (including empty pages)
\\ The track "SNPedia all" shows all SNPs that exist as a page in \ SNPedia.com. As SNPedia's user collaboration grows, more \ detail will be added to SNPedia.com pages. For now, most of the pages are auto-generated by bots \ and have empty pages. According to Mike Carioso (SNPedia.com founder), SNPedia entries are mostly \ ClinVar entries marked as pathogenic with at least 4 stars as defined by the\ \ ClinVar review status. \
\ \SNPedia with text: SNPedia pages with manually typed text
\\ The track "SNPedia with text" is a subset of the "SNPedia all" track. This track \ displays only SNPedia entries with a text page that was created manually by a user who typed in \ some text (approximately 5,000 entries). In the browser, click on the "configure" button\ and select "next/previous item navigation" to show clickable arrows in the browser which\ will jump to the next or previous item.\
\\ Clicks on the features show the text from the SNPedia.com page and a link to the original page.\
\ \Display Conventions and Configuration
\ \\ Genomic locations of SNPedia entries are labeled with the dbSNP ID.\
\ \\ In the track "SNPedia all SNPs", the features are colored based on the SNPedia microarray \ annotation: grey for SNPs that are on no microarray, dark blue for Affymetrix, dark purple for \ Illumina and black for features on both arrays.\
\ \Methods
\ \\ The mappings displayed in this track were used as provided in the SNPedia GFF file.\ For the "SNPedia with text" track, all SNPedia pages were downloaded and their content \ checked with a script that tries to remove pages that were auto-generated and not created manually \ by a user.\
\ \Credits
\ \\ Thanks to Mike Cariaso for help with the GFF download and Max Haeussler at UCSC for building this \ track.\
\ \References
\ \Cariaso Michael; Lennon Greg. \ \ SNPedia: a wiki supporting personal genome annotation, interpretation and analysis. \ Nucleic acids research. 2012 40Database issue:D1308-12.\ PMID: 22140107; \ PMC: \ PMC3245045
\ \ phenDis 1 color 50,0,100\ compositeTrack on\ group phenDis\ longLabel SNPedia\ shortLabel SNPedia\ track snpedia\ type bed 4\ visibility hide\ varFreqs SNV Frequencies bed 12 SNV Frequencies from various cohorts or national projects 0 100 0 0 0 127 127 127 0 0 0Description
\\ This track collection gathers variant allele frequencies from population-scale sequencing\ and genotyping projects worldwide, from a total of ~1.7 million genomes/exomes/arrays.\ Unlike gnomAD, the data was not reprocessed in a harmonized way; the variant VCFs were collected from the\ projects as-is. The goal is a single place to compare how common a variant is across\ different populations, ancestries, and cohorts, for projects that gnomAD is unlikely to\ reprocess soon. Three combined tracks aggregate the source data along different lines, and\ there is also one subtrack per project with the original VCF data and all the annotations\ that the project provides. The different projects use different pipelines and sequencing\ technologies. Click any of the projects above or below for a summary of their sample\ selection, sequencing assay and software pipeline. Many projects do not allow us to\ distribute the data, but we document how to request it and provide all converters, see Data Download below.\
\ \\ The browser has other tracks with variant frequencies. We have of course the data \ from gnomAD in separate tracks. Two projects that\ provide haplotype-phased genotypes can also be found in their own tracks:\ 1000 Genomes is a separate track, and the phased\ genotypes HGDP, SGDP, HGDP+1000 Genomes and Mexico Biobank are in the\ Phased Variants track. Their VCF versions below show\ only the allele frequency per variant, not the phased genotypes.\
\ \Please contact us (genome@soe.ucsc.edu) if you know of a project that we should add. So far,\ we have requested data from Regeneron's Million Exomes and the Mexico City studies (both requests rejected);\ Taiwan Biobank and the full UK Biobank WGS data requests are pending.
\ \Combined Tracks
\\ Three combined tracks merge variants from the individual subtracks into single bigBed files\ with predicted protein consequences and cross-database filtering. All three use the same\ filter conventions (variant type, consequence, source database, allele frequency, allele\ count, and per-database AF/AC).\
\- \
- Population reference — the\ default summary view: variants seen in the population reference cohorts (gnomAD\ HGDP+1kG, TOPMed, ALFA, HRC and the national WGS projects) and in the\ unaffected/control arms of the disease cohorts. Excludes the genotyping-array\ cohorts. \
- Disease cohorts —\ variants seen in the affected or case arm of five disease-study cohorts (SFARI SPARK\ WES and WGS autism probands, SCHEMA schizophrenia cases, GREGoR affected, GA4K\ rare-disease). Each variant also carries its background frequency, so case-enriched\ variants can be isolated by filtering Background AF. \
- Genotyping Array Databases Combined\ — 14.7 million variants from three array cohorts (TPMI Taiwan, Mexico Biobank,\ UK Biobank imputed). Kept separate because chip data has different per-variant\ confidence than sequencing. \
\ On the Disease and Population reference tracks, Affected AF and Background AF\ are pooled across contributing cohort arms (sum of allele counts divided by sum of allele\ numbers), not the maximum across arms, so the displayed frequency matches the carrier-count\ scale and a small cohort with a high local frequency does not dominate the value. See the\ "Pooled allele frequency" section on each combined track's description page for\ which cohorts contribute to the pool numerator and denominator.\
\ \Consequence filter — the "Other" bucket
\\
All three combined tracks share the same Consequence filter (Missense, Synonymous, Stop\
Gained, Frameshift, Splice Donor, Splice Acceptor, Intron, 3' UTR, 5' UTR, Non-coding,\
Intergenic, Other). The filter uses OR logic across the comma-separated consequence terms\
on each variant: a variant tagged stop_gained,frameshift is selected by either\
the "Stop Gained" or the "Frameshift" filter. The "Other"\
bucket catches the less common\
Sequence Ontology consequence\
that don't fit the named buckets above. Examples\
include splice_region (variant near a splice site but outside the canonical\
donor/acceptor), start_lost / stop_lost (variant disrupts the\
start codon or replaces the stop codon with a coding amino acid),\
stop_retained (variant changes the stop codon but keeps it a stop),\
inframe_insertion / inframe_deletion (in-frame indel that adds or\
removes whole codons), and coding_sequence (CDS variant where the precise\
impact is undetermined). If you include "Other" in the filter selection, no\
records will be hidden by the consequence filter.\
Available Datasets
\ \ \ \| Combined tracks | ||||||
| Database | \Region | \N | \Data Type | \Cohort | \Sub-populations | \Downloadable from UCSC | \
|---|---|---|---|---|---|---|
| Disease cohorts | \Sequencing-based disease cohorts | \~130k | \WGS/WES/long-read | \Affected/case arms of SFARI SPARK WES/WGS, SCHEMA, GREGoR, GA4K | \Affected/case AF and AC; background AF for contrast | \No | \
| Population reference | \Sequencing-based, population + unaffected | \~1.5mil | \WGS/WES/long-read | \Population cohorts + unaffected/control arms | \Background AF and AC; per-cohort and ancestry breakdowns | \No | \
| Genotyping Array Databases Combined | \TPMI, MexBB, UKBB | \~530k | \Array / imputed | \14.7M variants | \— | \No | \
| Individual project datasets | ||||||
| Database | \Region | \N | \Data Type | \Cohort | \Sub-populations | \Downloadable from UCSC | \
| AllOfUs v7 | \USA | \245k | \WGS | \General population, diverse | \African, Indigenous American, East Asian, European, Oceanian, South Asian\ (local ancestry; see Notes below) | \No | \
| TOPMED Freeze 10 | \USA | \151k | \WGS | \Heart, lung, blood, sleep disorder cohorts | \— | \No | \
| SFARI SPARK WES | \USA | \140k | \WES | \Autism families (parents + affected children) | \— | \No | \
| SFARI SPARK WGS | \USA | \12.5k | \WGS | \Autism families (parents + affected children) | \— | \No | \
| NCBI ALFA R4 | \USA | \408k | \WGS/WES/array mix | \Aggregated dbGaP studies, mixed phenotypes | \— | \Yes | \
| FinnGen R12 | \Finland | \500k | \Imputed (8.5k WGS ref panel) | \National biobank, ~10% of population | \— | \No | \
| UK Biobank (Neale Lab v3) | \UK | \361k | \Imputed array (HRC+UK10K+1KGp3 ref panel) | \White British subset of UK Biobank, Neale Lab Round 2 GWAS | \— | \Yes | \
| SweGen | \Sweden | \1k | \WGS | \Cross-section of Swedish population | \— | \No | \
| GoNL | \Netherlands | \498 | \WGS (~13x) | \250 unrelated Dutch trios (parents only) | \— | \Yes | \
| SCHEMA | \Multi-national | \121k | \WES | \Schizophrenia: 24k cases, 97k controls (Singh 2022 primary); VCF aggregates up to ~73k/~182k | \— | \Yes | \
| Japan ToMMO 61k | \Japan | \61k | \WGS | \General population | \— | \Yes | \
| WBBC China | \China | \4.5k | \WGS | \Westlake BioBank for Chinese pilot (now part of China Precision BioBank), autosomes only | \North Han, Central Han, South Han, Lingnan Han (by recruitment region) | \Yes | \
| ChinaMAP phase 1 | \China | \10.5k | \WGS | \China Metabolic Analytics Project, ~40x depth, 27 provinces and 8 ethnic groups, autosomes only | \— | \No | \
| Taiwan TPMI | \Taiwan | \165k | \Axiom SNP array (TPM1) | \Taiwan Precision Medicine Initiative, Han Chinese | \— | \No | \
| Australia MGRB | \Australia | \4k | \WGS | \Healthy elderly (age ≥70) | \— | \No | \
| GenomeAsia Pilot | \Asia (219 groups) | \1.7k | \WGS | \Diverse populations across Asia | \Northeast Asian, Southeast Asian, South Asian, Oceanian, American, African,\ Western European Reference | \Yes | \
| ABraOM Brazil | \Brazil | \1.2k | \WGS | \Elderly admixed individuals (São Paulo) | \— | \Yes | \
| IndiGenomes | \India | \1k | \WGS | \Healthy individuals | \— | \Yes | \
| GenomeIndia 9.7k | \India | \9.8k | \WGS (≥23x) | \83 anthropologically defined endogamous populations across India | \— | \No | \
| KOVA Korea | \Korea | \5.3k | \1.9k WGS + 3.4k WES | \Normal tissue from cancer patients, healthy parents, volunteers | \— | \No | \
| NPM Singapore | \Singapore | \9.8k | \WGS | \Chinese, Indian, Malay ancestry | \— | \No | \
| Saudi Genome | \Saudi Arabia | \302 | \WGS (30x) | \Saudi population | \— | \Yes | \
| HRC | \Multi-national | \~30k | \Low-coverage WGS (7x) | \Imputation reference panel (excl. 1000 Genomes) | \— | \Yes | \
| MXB Mexico Biobank | \Mexico | \6k | \Genotyping array | \Diverse Mexican ancestries, 898 recruitment sites | \By state, by ancestry | \No | \
| SGDP | \Global | \279 | \WGS | \142 diverse populations worldwide | \By population | \Yes | \
| GREGoR R4 | \USA | \3.6k | \WGS | \Rare disease families (10.7k participants, 4.4k families) | \— | \Yes | \
| gnomAD HGDP+1kG | \Global | \4k | \WGS | \80 populations (HGDP + 1000 Genomes reprocessed) | \4k-cohort total AF only; per-population AF columns are full gnomAD v3.1.2\ release values (~76k genomes), see Notes below | \Yes | \
| GA4K | \USA | \552 | \PacBio HiFi long-read WGS | \Genomic Answers for Kids: pediatric rare-disease probands and families (Children's Mercy) | \— | \Yes | \
| CoLoRSdb v1.2.0 | \Multi-national | \1,027 | \PacBio HiFi long-read WGS | \Consortium of Long Read Sequencing: aggregated population-consented samples across multiple research cohorts | \— | \Yes | \
| SVatalog 101 | \Canada (SickKids) | \101 | \10X Genomics linked short-read WGS | \GWAS SVatalog cohort: 101 samples with matched long-read SVs (see chirmade101Sv) | \— | \Yes | \
| Indigenous Africans 180 | \Africa (Ethiopia, Tanzania, Cameroon, Botswana) | \180 | \WGS (>30x) | \12 indigenous populations across all four African language phyla (Khoesan, Niger-Congo, Nilo-Saharan, Afroasiatic) | \— | \No | \
Display Conventions
\ \Most tracks only show the variant and allele frequencies on mouseover or clicks.\ When zoomed in, tracks display alleles with base-specific coloring. Homozygote\ data are shown as one letter; heterozygotes are shown with both\ letters. All VCF files are normalized, with one allele per annotation (no multi-allele\ lines).\
\ \Methods
\\ Each subtrack includes the upstream project's VCF largely as-released,\ sometimes converted from other file formats; per-subtrack pipelines (coordinate\ liftover, format conversion, header normalization) are documented on each\ subtrack's own description page and recorded in the\ build documentation.\ The conversion scripts \ live alongside the makedoc\ in the scripts directory.\
\\
The combined Disease cohorts and Population reference tracks are built by a separate\
pipeline: each per-subtrack VCF is normalized (bcftools norm), all sites are\
merged into a single callset, consequence annotations are recomputed against Ensembl with\
bcftools csq, and the merged callset is split by phenotype. Within each combined\
track, the Affected AF and Background AF columns are\
pooled across contributing cohort arms (sum of allele counts divided by sum of\
allele numbers, with the per-arm AN derived from each cohort's AC and AF), so the displayed\
frequency matches the carrier-count.\
The Genotyping Array Databases Combined track is built the same\
way from the array cohorts only.\
Data Access
\Many of these databases have restrictions on redistribution and download.\
The table above indicates if we are allowed to distribute it in VCF format.\
Click the database link in the table above and see the "Data Access"\
section of the respective track for a description of where to download the\
data. When the data is freely available from our website, the Data Access\
section will also indicate the VCF file location on our download server.\
Because it contains some licensed data, the combined track is not available for\
download, but can be recreated using the conversion scripts in our
Credits
\ \This track is only possible thanks to the data from millions of volunteers around the world, who donated blood, signed consent forms and provided health information about themselves and sometimes their families. Click any of the tracks in the list above to see the specific credits for each project. Thanks to Alex Ioannidis, UCSC, for the inspiration for this track and to Andreas Lahner, MGZ, for feedback.
\ \References
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Bycroft C, Freeman C, Petkova D, Band G, Elliott LT, Sharp K, Motyer A, Vukcevic D, Delaneau O,\
O'Connell J et al.\
\
The UK Biobank resource with deep phenotyping and genomic data.\
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\
Cao Y, Li L, Xu M, Feng Z, Sun X, Lu J, Xu Y, Du P, Wang T, Hu R et al.\
\
The ChinaMAP analytics of deep whole genome sequences in 10,588 individuals.\
Cell Res. 2020 Sep;30(9):717-731.\
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Chirmade S, Wang Z, Mastromatteo S, Sanders E, Thiruvahindrapuram B, Nalpathamkalam T, Pellecchia G,\
Lin F, Keenan K, Patel RV et al.\
\
GWAS SVatalog: a visualization tool to aid fine-mapping of GWAS loci with structural variations.\
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\ Cohen ASA, Farrow EG, Abdelmoity AT, Alaimo JT, Amudhavalli SM, Anderson JT, Bansal L, Bartik L,\ Baybayan P, Belden B et al.\ \ Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes.\ Genet Med. 2022 Jun;24(6):1336-1348.\ PMID: 35305867\
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Cong PK, Bai WY, Li JC, Yang MY, Khederzadeh S, Gai SR, Li N, Liu YH, Yu SH, Zhao WW et al.\
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Genomic analyses of 10,376 individuals in the Westlake BioBank for Chinese (WBBC) pilot project.\
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Fan S, Spence JP, Feng Y, Hansen MEB, Terhorst J, Beltrame MH, Ranciaro A, Hirbo J, Beggs W, Thomas\
N et al.\
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Whole-genome sequencing reveals a complex African population demographic history and signatures of\
local adaptation.\
Cell. 2023 Mar 2;186(5):923-939.e14.\
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Feliciano P, Daniels AM, Snyder LG, Beaumont A, Camba A, Esler A, Gulsrud AG, Mason A, Nicholson A,\
Paolicelli AM et al; The SPARK Consortium.\
\
SPARK: A US Cohort of 50,000 Families to Accelerate Autism Research.\
Neuron. 2018 Feb 7;97(3):488-493.\
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\ Genome of the Netherlands Consortium.\ \ Whole-genome sequence variation, population structure and demographic history of the Dutch\ population.\ Nat Genet. 2014 Aug;46(8):818-25.\ PMID: 24974849\
\ \\
GenomeAsia100K Consortium.\
\
The GenomeAsia 100K Project enables genetic discoveries across Asia.\
Nature. 2019 Dec;576(7785):106-111.\
PMID: 31802016; PMC:
\
Jain A, Bhoyar RC, Pandhare K, Mishra A, Sharma D, Imran M, Senthivel V, Divakar MK, Rophina M,\
Jolly B et al.\
\
IndiGenomes: a comprehensive resource of genetic variants from over 1000 Indian genomes.\
Nucleic Acids Res. 2021 Jan 8;49(D1):D1225-D1232.\
PMID: 33095885; PMC:
\
Karczewski KJ, Francioli LC, Tiao G, Cummings BB, Alfoldi J, Wang Q, Collins RL, Laricchia KM,\
Ganna A, Birnbaum DP et al.\
\
The mutational constraint spectrum quantified from variation in 141,456 humans.\
Nature. 2020 May;581(7809):434-443.\
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\
Koenig Z, Yohannes MT, Nkambule LL, Zhao X, Goodrich JK, Kim HA, Wilson MW, Tiao G, Hao SP, Sahakian\
N et al.\
\
A harmonized public resource of deeply sequenced diverse human genomes.\
Genome Res. 2024 Jun 25;34(5):796-809.\
PMID: 38749656; PMC:
\
Kurki MI, Karjalainen J, Palta P, Sipila TP, Kristiansson K, Donner KM, Reeve MP, Laivuori H,\
Aavikko M, Kaunisto MA et al.\
\
FinnGen provides genetic insights from a well-phenotyped isolated population.\
Nature. 2023 Jan;613(7944):508-518.\
PMID: 36653562; PMC:
\
Lacaze P, Pinese M, Kaplan W, Stone A, Brion MJ, Woods RL, McNamara M, McNeil JJ, Dinger ME,\
Thomas DM.\
\
The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals.\
Rationale and cohort design.\
Eur J Hum Genet. 2019 Feb;27(2):308-316.\
PMID: 30353151; PMC:
\
Lee S, Seo J, Park J, Nam JY, Choi A, Ignatius JS, Bjornson RD, Chae JH, Jang IJ, Lee S\
et al.\
\
Korean Variant Archive (KOVA): a reference database of genetic variations in the Korean\
population.\
Sci Rep. 2017 Jun 27;7(1):4287.\
PMID: 28655895; PMC:
\
Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S,\
Tandon A et al.\
\
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.\
Nature. 2016 Oct 13;538(7624):201-206.\
PMID: 27654912; PMC:
\
Malomane DK, Williams MP, Huber CD, Mangul S, Abedalthagafi M, Chiang CWK.\
\
Patterns of population structure and genetic variation within the Saudi Arabian population.\
bioRxiv. 2025 Jan 13;.\
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McCarthy S, Das S, Kretzschmar W, Delaneau O, Wood AR, Teumer A, Kang HM, Fuchsberger C, Danecek P,\
Sharp K et al.\
\
A reference panel of 64,976 haplotypes for genotype imputation.\
Nat Genet. 2016 Oct;48(10):1279-83.\
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Naslavsky MS, Scliar MO, Yamamoto GL, Wang JYT, Zverinova S, Karp T, Nunes K, Ceroni JRM,\
de Carvalho DL, da Silva Simões CE et al.\
\
Whole-genome sequencing of 1,171 elderly admixed individuals from São Paulo, Brazil.\
Nat Commun. 2022 Mar 4;13(1):1004.\
PMID: 35246524; PMC:
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Singh T, Poterba T, Curtis D, Akil H, Al Eissa M, Barchas JD, Bass N, Bigdeli TB, Breen G,\
Bromet EJ et al.\
\
Rare coding variants in ten genes confer substantial risk for schizophrenia.\
Nature. 2022 Apr;604(7906):509-516.\
PMID: 35396579; PMC:
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Sohail M, Palma-Martínez MJ, Chong AY, Quinto-Cortés CD, Barberena-Jonas C,\
Medina-Muñoz SG, Ragsdale A, Delgado-Sánchez G, Cruz-Hervert LP, Ferreyra-Reyes L\
et al.\
\
Mexican Biobank advances population and medical genomics of diverse ancestries.\
Nature. 2023 Oct;622(7984):775-783.\
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Kanno T et al.\
\
jMorp: Japanese Multi-Omics Reference Panel update report 2023.\
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Taliun D, Harris DN, Kessler MD, Carlson J, Szpiech ZA, Torres R, Taliun SAG, Corvelo A, Gogarten SM,\
Kang HM et al.\
\
Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program.\
Nature. 2021 Feb;590(7845):290-299.\
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\ Wong E, Bertin N, Hebrard M, Tirado-Magallanes R, Bellis C, Lim WK, Chua CY, Tong PML, Chua R, Mak K\ et al.\ \ The Singapore National Precision Medicine Strategy.\ Nat Genet. 2023 Feb;55(2):178-186.\ PMID: 36658435\
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\ \\
Yang HC, Kwok PY, Li LH, Liu YM, Jong YJ, Lee KY, Wang DW, Tsai MF, Yang JH, Chen CH et al.\
\
The Taiwan Precision Medicine Initiative provides a cohort for large-scale studies.\
Nature. 2025 Dec;648(8092):117-127.\
PMID: 41092961; PMC:
Description
\ \\ This track shows alignments between human expressed sequence tags\ (ESTs) in \ GenBank and the genome that show signs of splicing when\ aligned against the genome. ESTs are single-read sequences, typically about\ 500 bases in length, that usually represent fragments of transcribed genes.\
\ \\ To be considered spliced, an EST must show\ evidence of at least one canonical intron (i.e., the genomic\ sequence between EST alignment blocks must be at least 32 bases in\ length and have GT/AG ends). By requiring splicing, the level\ of contamination in the EST databases is drastically reduced\ at the expense of eliminating many genuine 3' ESTs.\ For a display of all ESTs (including unspliced), see the\ human EST track.\
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for\ \ PSL alignment tracks. In dense display mode, darker shading\ indicates a larger number of aligned ESTs.\
\ \\ The strand information (+/-) indicates the\ direction of the match between the EST and the matching\ genomic sequence. It bears no relationship to the direction\ of transcription of the RNA with which it might be associated.\
\ \\ The description page for this track has a filter that can be used to change\ the display mode, alter the color, and include/exclude a subset of items\ within the track. This may be helpful when many items are shown in the track\ display, especially when only some are relevant to the current task.\
\ \\ To use the filter:\
- \
- Type a term in one or more of the text boxes to filter the EST\ display. For example, to apply the filter to all ESTs expressed in a specific\ organ, type the name of the organ in the tissue box. To view the list of\ valid terms for each text box, consult the table in the Table Browser that\ corresponds to the factor on which you wish to filter. For example, the\ "tissue" table contains all the types of tissues that can be\ entered into the tissue text box. Multiple terms may be entered at once,\ separated by a space. Wildcards may also be used in the filter. \
- If filtering on more than one value, choose the desired combination\ logic. If "and" is selected, only ESTs that match all filter\ criteria will be highlighted. If "or" is selected, ESTs that\ match any one of the filter criteria will be highlighted. \
- Choose the color or display characteristic that should be used to\ highlight or include/exclude the filtered items. If "exclude" is\ chosen, the browser will not display ESTs that match the filter criteria.\ If "include" is selected, the browser will display only those\ ESTs that match the filter criteria. \
\ This track may also be configured to display base labeling, a feature that\ allows the user to display all bases in the aligning sequence or only those\ that differ from the genomic sequence. For more information about this option,\ go to the\ \ Base Coloring for Alignment Tracks page.\ Several types of alignment gap may also be colored;\ for more information, go to the\ \ Alignment Insertion/Deletion Display Options page.\
\ \Methods
\ \\ To make an EST, RNA is isolated from cells and reverse\ transcribed into cDNA. Typically, the cDNA is cloned\ into a plasmid vector and a read is taken from the 5'\ and/or 3' primer. For most — but not all — ESTs, the\ reverse transcription is primed by an oligo-dT, which\ hybridizes with the poly-A tail of mature mRNA. The\ reverse transcriptase may or may not make it to the 5'\ end of the mRNA, which may or may not be degraded.\
\ \\ In general, the 3' ESTs mark the end of transcription\ reasonably well, but the 5' ESTs may end at any point\ within the transcript. Some of the newer cap-selected\ libraries cover transcription start reasonably well. Before the\ cap-selection techniques\ emerged, some projects used random rather than poly-A\ priming in an attempt to retrieve sequence distant from the\ 3' end. These projects were successful at this, but as\ a side effect also deposited sequences from unprocessed\ mRNA and perhaps even genomic sequences into the EST databases.\ Even outside of the random-primed projects, there is a\ degree of non-mRNA contamination. Because of this, a\ single unspliced EST should be viewed with considerable\ skepticism.\
\ \\ To generate this track, human ESTs from GenBank were aligned\ against the genome using blat. Note that the maximum intron length\ allowed by blat is 750,000 bases, which may eliminate some ESTs with very\ long introns that might otherwise align. When a single\ EST aligned in multiple places, the alignment having the\ highest base identity was identified. Only alignments having\ a base identity level within 0.5% of the best and at least 96% base identity\ with the genomic sequence are displayed in this track.\
\ \Credits
\ \\ This track was produced at UCSC from EST sequence data\ submitted to the international public sequence databases by\ scientists worldwide.\
\ \References
\\
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.\
\
GenBank.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42.\
PMID: 23193287; PMC:
\
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL.\
GenBank: update.\
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D23-6.\
PMID: 14681350; PMC:
\
Kent WJ.\
BLAT - the BLAST-like alignment tool.\
Genome Res. 2002 Apr;12(4):656-64.\
PMID: 11932250; PMC:
Description
\ \\ The "Splicing Impact" container track contains tracks showing the predicted or validated effect of variants\ close to splice sites.\
\ \AbSplice
\AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner,\ Çelik et al., 2023. This track displays precomputed AbSplice scores for all possible\ single-nucleotide variants genome-wide. The scores represent the probability that a given variant\ causes aberrant splicing in a given tissue.\ AbSplice scores\ can be computed from VCF files and are based on quantitative tissue-specific splice site annotations\ (SpliceMaps).\ While SpliceMaps can be generated for any tissue of interest from a cohort of RNA-seq samples, this\ track includes 49 tissues available from the\ Genotype-Tissue\ Expression (GTEx) dataset.\
\ \SpliceAI Variants
\SpliceAI is an open-source deep\ learning splicing prediction algorithm that can predict splicing alterations caused by DNA variations.\ To score variants, the spliceAI algorithm is run on the genome sequence itself and scores each\ nucleotide for the probability that it is a donor or acceptor site, on both the\ forward and the reverse strand. Then variants are added to the sequence and the new sequence is\ scored. Variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\ SpliceAI was developed at Illumina; a\ lookup tool\ is provided by the Broad institute. \
\ \SpliceAI Wildtype
\\ This SpliceAI "Wildtype" container track shows the scores for the genome sequence itself,\ without variants, from predicted splice donor (5' intron boundaries) and splice acceptor\ (3' intron boundaries) sites. Predictions are strand-specific, with separate subtracks for the\ plus and minus strands. These tracks are useful in combination with the variants track for\ evaluating new transcript models. They can be used to assess potential exon boundaries or\ possible splice acceptor sites.
\ \ Why are some variants not scored by SpliceAI?\\ SpliceAI only annotates variants within genes defined by the gene\ annotation file. Additionally, SpliceAI does not annotate variants if they are close to chromosome\ ends (5kb on either side), deletions of length greater than twice the input parameter -D, or\ inconsistent with the reference fasta file.\
\ \ What are the differences between masked and unmasked tracks?\\ The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\ and weakening unannotated splice sites, which are typically much less pathogenic than weakening\ annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\ changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\ splicing analysis and masked tracks for variant interpretation.\
\ \SpliceVarDB
\SpliceVarDB is an online database consolidating over 50,000 variants assayed\ for their effects on splicing in over 8,000 human genes. The authors evaluated\ over 500 published data sources and established a spliceogenicity scale to\ standardize, harmonize, and consolidate variant validation data generated by a\ range of experimental protocols. Genes and variant locations were obtained using\ GENCODE v44. Splice regions were calculated as specific distances from the closest\ canonical exon, including 5' and 3' untranslated regions (UTRs). The\ database is available at\ splicevardb.org.
\ \Display Conventions and Configuration
\ \AbSplice
\The AbSplice score is a probability estimate of how likely aberrant splicing of some sort takes\ place in a given tissue. The authors suggest three cutoffs which are represented by color in the track.\
\ \- \
- High (red) - \ An AbSplice score over 0.2 indicates a high likelihood of aberrant splicing in at least one tissue. \
- Medium (orange) - \ A score between 0.05 and 0.2 indicates a medium likelihood. \
- Low (blue) - \ A score between 0.01 and 0.05 indicates a low likelihood. \
- Scores below 0.01 are not displayed. \
\ Mouseover on items shows the gene name, maximum score, and tissues that had this score. Clicking on\ any item brings up a table with scores for all 49 GTEX tissues.\
\ \SpliceAI
\\ Variants are colored according to Walker et al. 2023 splicing impact:\
\- \
- Predicted impact on splicing: Score >= 0.2 \
- Not informative: Score < 0.2 and > 0.1 \
- No impact on splicing: Score <= 0.1 \
\ The scores range from 0 to 1 and can be interpreted as the\ probability of the variant being splice-altering. In the paper, a detailed characterization is\ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \SpliceAI Wildtype
\\ These tracks are in bigWig format. The signal height represents the SpliceAI probability score.\ This track may be configured in a variety of ways to highlight different aspects of the displayed\ information. Click the "Graph configuration help" link for an explanation of configuration\ options.
\ \SpliceVarDB
\According to the strength of their supporting\ evidence, variants were classified as "splice-altering" (~25%), "not\ splice-altering" (~25%), and "low-frequency splice-altering" (~50%), which\ correspond to weak or indeterminate evidence of spliceogenicity. 55% of the\ splice-altering variants in SpliceVarDB are outside the canonical splice sites\ (5.6% are deep intronic). The data is shown as lollipop plots that can be clicked, \ the details page then shows a link to SpliceVarDB with full details.\
\ \The classification thresholds primarily follow those established by the original study.\ However, most studies only defined criteria for splice-altering variants and did not define\ criteria for variants that resulted in normal splicing. The authors implemented stringent\ thresholds to define the normal category and ensure a high-quality set of control variants.\ Variants that did not meet these criteria were classified as low-frequency splice-altering\ variants with a wide range of sub-optimal scores. Variants that fell between the normal and\ splice-altering classifications were placed into a low-frequency splice-altering category.\ In situations where a variant was validated multiple times, if at least one validation\ returned splice-altering and another returned normal, the "conflicting" category\ was applied.\
\ \\ The lollipop plots are color-coded based on the score value, which corresponds\ to the following classifications:\
- \
- 3 - Splice-altering \
- 2 - Low-frequency \
- 1 - Normal \
- 0 - Conflicting \
Methods
\AbSplice
\Data was converted from the files (AbSplice_DNA_ hg38 _snvs_high_scores.zip) provided by the authors\ at zenodo.org. Files in the\ score_cutoff=0.01 directory were concatenated. To convert the data to bigBed format, scores and\ their tissues were selected from the AbSplice_DNA fields and maximum scores, and then calculated\ using a custom Python script, which can be found in the\ \ makeDoc from our GitHub repository.
\ \SpliceAI
\\
The data were downloaded from \
Since most of the values are 0 or almost 0, we selected only those variants\
with a score equal to or greater than 0.02.\
\
The complete processing of this track can be found in the \
makedoc.\
Data was provided by the Michael Hiller lab. SpliceAI was run on the entire genome reference\
chromosomes. Since the algorithm does not know where transcripts start or end, the scores\
can differ from those on other websites, especially for splice sites before the last exon or\
around the first exon. The data was converted by Patricia Sullivan from SpliceVarDB to\
bigLolly format, and the UCSC\
Browser staff downloaded it for display.\
Precomputed AbSplice-DNA scores in all 49 GTEx tissues are available at\
\
Zenodo. \
The SpliceAI data is not available for download from the Genome Browser.\
The raw data can be found directly on\
Illumina.\
FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are\
made available by Illumina only for academic or not-for-profit research only.\
By accessing the SpliceAI data, you acknowledge and agree that you may only\
use this data for your own personal academic or not-for-profit research only,\
and not for any other purposes. You may not use this data for any for-profit,\
clinical, or other commercial purpose without obtaining a commercial license\
from Illumina, Inc.\
\
The raw data can be explored interactively with the Table Browser\
or the Data Integrator. For automated analysis, the data may\
be queried from our REST API. \
For automated download and analysis, the genome annotation is stored in a bigBed or a bigWig file\
that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools, e.g.\
Thanks to Illumina for making SpliceAI available, both the model and the precomputed data files. Thanks to Francois Lecoquierre from the University of Oxford, Jean-Madeleine de Sainte Agathe\
from Institut Pasteur Paris, and Michael Hiller from the Senckenberg Museum Frankfurt for\
suggesting and then creating the SpliceAI Wildtype annotations. Thanks to Nils Wagner for helpful comments and suggestions for the AbSplice track. Thanks to the SpliceVarDB team for converting the data into our data formats. \
Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\
Arbelaez J, Cui W, Schwartz GB et al.\
\
Predicting Splicing from Primary Sequence with Deep Learning.\
Cell. 2019 Jan 24;176(3):535-548.e24.\
PMID: 30661751\
\
Sullivan PJ, Quinn JMW, Wu W, Pinese M, Cowley MJ.\
\
SpliceVarDB: A comprehensive database of experimentally validated human splicing variants.\
Am J Hum Genet. 2024 Oct 3;111(10):2164-2175.\
PMID: 39226898; PMC: \
Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J.\
\
Aberrant splicing prediction across human tissues.\
Nat Genet. 2023 May;55(5):861-870.\
PMID: 37142848\
\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC: \
The "Splicing Impact" container track contains tracks showing the predicted or validated effect of variants\
close to splice sites.\
AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner,\
Çelik et al., 2023. This track displays precomputed AbSplice scores for all possible\
single-nucleotide variants genome-wide. The scores represent the probability that a given variant\
causes aberrant splicing in a given tissue.\
AbSplice scores\
can be computed from VCF files and are based on quantitative tissue-specific splice site annotations\
(SpliceMaps).\
While SpliceMaps can be generated for any tissue of interest from a cohort of RNA-seq samples, this\
track includes 49 tissues available from the\
Genotype-Tissue\
Expression (GTEx) dataset.\
SpliceAI is an open-source deep\
learning splicing prediction algorithm that can predict splicing alterations caused by DNA variations.\
To score variants, the spliceAI algorithm is run on the genome sequence itself and scores each\
nucleotide for the probability that it is a donor or acceptor site, on both the\
forward and the reverse strand. Then variants are added to the sequence and the new sequence is\
scored. Variants may activate nearby cryptic splice sites, leading to abnormal transcript isoforms.\
SpliceAI was developed at Illumina; a\
lookup tool\
is provided by the Broad institute. \
\
This SpliceAI "Wildtype" container track shows the scores for the genome sequence itself,\
without variants, from predicted splice donor (5' intron boundaries) and splice acceptor\
(3' intron boundaries) sites. Predictions are strand-specific, with separate subtracks for the\
plus and minus strands. These tracks are useful in combination with the variants track for\
evaluating new transcript models. They can be used to assess potential exon boundaries or\
possible splice acceptor sites. \
SpliceAI only annotates variants within genes defined by the gene\
annotation file. Additionally, SpliceAI does not annotate variants if they are close to chromosome\
ends (5kb on either side), deletions of length greater than twice the input parameter -D, or\
inconsistent with the reference fasta file.\
\
The unmasked tracks include splicing changes corresponding to strengthening annotated splice sites\
and weakening unannotated splice sites, which are typically much less pathogenic than weakening\
annotated splice sites and strengthening unannotated splice sites. The delta scores of such splicing\
changes are set to 0 in the masked files. We recommend using the unmasked tracks for alternative\
splicing analysis and masked tracks for variant interpretation.\
SpliceVarDB is an online database consolidating over 50,000 variants assayed\
for their effects on splicing in over 8,000 human genes. The authors evaluated\
over 500 published data sources and established a spliceogenicity scale to\
standardize, harmonize, and consolidate variant validation data generated by a\
range of experimental protocols. Genes and variant locations were obtained using\
GENCODE v44. Splice regions were calculated as specific distances from the closest\
canonical exon, including 5' and 3' untranslated regions (UTRs). The\
database is available at\
splicevardb.org. The AbSplice score is a probability estimate of how likely aberrant splicing of some sort takes\
place in a given tissue. The authors suggest three cutoffs which are represented by color in the track.\
\
Mouseover on items shows the gene name, maximum score, and tissues that had this score. Clicking on\
any item brings up a table with scores for all 49 GTEX tissues.\
\
Variants are colored according to Walker et al. 2023 splicing impact:\
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain\
\
\
SpliceAI Wildtype
\
SpliceVarDB
\
Data Access
\
\
\
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/splicevardb/SVADB.bb\
\ -chrom=chr21 -start=0 -end=100000000 stdout\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500\
\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/spliceAi/wildtype/spliceAiAcceptorMinus.bw\
\ stdout\
\
\
These tools can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.Credits
\
\
References
\
Description
\
\
AbSplice
\
SpliceAI Variants
\
SpliceAI Wildtype
\
SpliceVarDB
\
Display Conventions and Configuration
\
\
AbSplice
\
\
\
SpliceAI
\
\
\
\ The scores range from 0 to 1 and can be interpreted as the\ probability of the variant being splice-altering. In the paper, a detailed characterization is\ provided for 0.2 (high recall), 0.5 (recommended), and 0.8 (high precision) cutoffs.
\ \SpliceAI Wildtype
\\ These tracks are in bigWig format. The signal height represents the SpliceAI probability score.\ This track may be configured in a variety of ways to highlight different aspects of the displayed\ information. Click the "Graph configuration help" link for an explanation of configuration\ options.
\ \SpliceVarDB
\According to the strength of their supporting\ evidence, variants were classified as "splice-altering" (~25%), "not\ splice-altering" (~25%), and "low-frequency splice-altering" (~50%), which\ correspond to weak or indeterminate evidence of spliceogenicity. 55% of the\ splice-altering variants in SpliceVarDB are outside the canonical splice sites\ (5.6% are deep intronic). The data is shown as lollipop plots that can be clicked, \ the details page then shows a link to SpliceVarDB with full details.\
\ \The classification thresholds primarily follow those established by the original study.\ However, most studies only defined criteria for splice-altering variants and did not define\ criteria for variants that resulted in normal splicing. The authors implemented stringent\ thresholds to define the normal category and ensure a high-quality set of control variants.\ Variants that did not meet these criteria were classified as low-frequency splice-altering\ variants with a wide range of sub-optimal scores. Variants that fell between the normal and\ splice-altering classifications were placed into a low-frequency splice-altering category.\ In situations where a variant was validated multiple times, if at least one validation\ returned splice-altering and another returned normal, the "conflicting" category\ was applied.\
\ \\ The lollipop plots are color-coded based on the score value, which corresponds\ to the following classifications:\
- \
- 3 - Splice-altering \
- 2 - Low-frequency \
- 1 - Normal \
- 0 - Conflicting \
Methods
\AbSplice
\Data was converted from the files (AbSplice_DNA_ hg38 _snvs_high_scores.zip) provided by the authors\ at zenodo.org. Files in the\ score_cutoff=0.01 directory were concatenated. To convert the data to bigBed format, scores and\ their tissues were selected from the AbSplice_DNA fields and maximum scores, and then calculated\ using a custom Python script, which can be found in the\ \ makeDoc from our GitHub repository.
\ \SpliceAI
\\
The data were downloaded from \
Since most of the values are 0 or almost 0, we selected only those variants\
with a score equal to or greater than 0.02.\
\
The complete processing of this track can be found in the \
makedoc.\
Data was provided by the Michael Hiller lab. SpliceAI was run on the entire genome reference\
chromosomes. Since the algorithm does not know where transcripts start or end, the scores\
can differ from those on other websites, especially for splice sites before the last exon or\
around the first exon. The data was converted by Patricia Sullivan from SpliceVarDB to\
bigLolly format, and the UCSC\
Browser staff downloaded it for display.\
Precomputed AbSplice-DNA scores in all 49 GTEx tissues are available at\
\
Zenodo. \
The SpliceAI data is not available for download from the Genome Browser.\
The raw data can be found directly on\
Illumina.\
FOR ACADEMIC AND NOT-FOR-PROFIT RESEARCH USE ONLY. The SpliceAI scores are\
made available by Illumina only for academic or not-for-profit research only.\
By accessing the SpliceAI data, you acknowledge and agree that you may only\
use this data for your own personal academic or not-for-profit research only,\
and not for any other purposes. You may not use this data for any for-profit,\
clinical, or other commercial purpose without obtaining a commercial license\
from Illumina, Inc.\
\
The raw data can be explored interactively with the Table Browser\
or the Data Integrator. For automated analysis, the data may\
be queried from our REST API. \
For automated download and analysis, the genome annotation is stored in a bigBed or a bigWig file\
that can be downloaded from\
our download server.\
Individual regions or the whole genome annotation can be obtained using our tools, e.g.\
Thanks to Illumina for making SpliceAI available, both the model and the precomputed data files. Thanks to Francois Lecoquierre from the University of Oxford, Jean-Madeleine de Sainte Agathe\
from Institut Pasteur Paris, and Michael Hiller from the Senckenberg Museum Frankfurt for\
suggesting and then creating the SpliceAI Wildtype annotations. Thanks to Nils Wagner for helpful comments and suggestions for the AbSplice track. Thanks to the SpliceVarDB team for converting the data into our data formats. \
Jaganathan K, Kyriazopoulou Panagiotopoulou S, McRae JF, Darbandi SF, Knowles D, Li YI, Kosmicki JA,\
Arbelaez J, Cui W, Schwartz GB et al.\
\
Predicting Splicing from Primary Sequence with Deep Learning.\
Cell. 2019 Jan 24;176(3):535-548.e24.\
PMID: 30661751\
\
Sullivan PJ, Quinn JMW, Wu W, Pinese M, Cowley MJ.\
\
SpliceVarDB: A comprehensive database of experimentally validated human splicing variants.\
Am J Hum Genet. 2024 Oct 3;111(10):2164-2175.\
PMID: 39226898; PMC: \
Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J.\
\
Aberrant splicing prediction across human tissues.\
Nat Genet. 2023 May;55(5):861-870.\
PMID: 37142848\
\
Walker LC, Hoya M, Wiggins GAR, Lindy A, Vincent LM, Parsons MT, Canson DM, Bis-Brewer D, Cass A,\
Tchourbanov A et al.\
\
Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on\
splicing: Recommendations from the ClinGen SVI Splicing Subgroup.\
Am J Hum Genet. 2023 Jul 6;110(7):1046-1067.\
PMID: 37352859; PMC: \
The STRchive track displays 75 disease-associated short tandem repeat (STR) loci\
curated by the STRchive project.\
STRchive is a dynamic, community-driven resource that compiles population-level and\
locus-specific data for tandem repeat loci implicated in human genetic diseases. \
Tandem repeat expansion disorders are caused by the expansion of short repetitive DNA\
sequences beyond a pathogenic threshold. These expansions can cause a wide range of\
neurological, neuromuscular, and developmental disorders, including Huntington disease,\
fragile X syndrome, Friedreich ataxia, and many forms of spinocerebellar ataxia. \
This track shows the genomic positions of disease-associated STR loci from the STRchive\
catalog, along with the reference and pathogenic repeat motifs, minimum pathogenic repeat\
count thresholds, mode of inheritance, and associated diseases. The data are based on\
the GRCh38/hg38 reference assembly. \
Items are colored by mode of inheritance: \
Each item is labeled by its STRchive locus ID, which combines the disease abbreviation\
and gene symbol (e.g., "HD_HTT" for Huntington disease at the HTT\
gene). Hovering over an item shows the repeat motif, gene, pathogenic threshold,\
and inheritance mode. Clicking an item links to the corresponding\
STRchive locus page with detailed\
clinical and population-level information. \
The STRchive disease locus catalog was downloaded from the\
STRchive GitHub\
repository (file \
For each locus, the catalog provides: \
The BED file was converted to bigBed format for display in the Genome Browser. Coordinates\
were used as provided (0-based half-open BED format). \
The raw data can be explored interactively with the\
Table Browser or the\
Data Integrator. For automated\
analysis, the data may be queried from our\
REST API. The underlying bigBed\
file can be downloaded from our\
download\
server. \
The complete STRchive dataset, including additional annotations not shown in this track,\
is available from strchive.org and\
the STRchive GitHub\
repository. The data are released under a\
CC BY 4.0\
license. \
Thanks to Harriet Dashnow (University of Colorado), Laurel Hiatt (University of Utah),\
Ben Weisburd (Broad Institute), and the STRchive team for creating and maintaining this\
resource. \
Hiatt L, Weisburd B, Dolzhenko E, Rubinetti V, Avvaru AK,\
VanNoy GE, Kurtas NE, Rehm HL, Quinlan AR, Dashnow H.\
\
STRchive: a dynamic resource detailing population-level and\
locus-specific insights at tandem repeat disease loci.\
Genome Med. 2025 Mar 26;17(1):29.\
PMID: 40140942; PMC: This track shows locations of Sequence Tagged Site (STS) markers\
along the draft assembly. These markers have been mapped using either\
genetic mapping (Genethon, Marshfield, and deCODE maps), radiation\
hybridization mapping (Stanford, Whitehead RH, and GeneMap99 maps) or\
YAC mapping (the Whitehead YAC map) techniques. Since August 2001,\
this track no longer displays fluorescent in situ hybridization (FISH)\
clones, which are now displayed in a separate track. Genetic map markers are shown in blue; radiation hybrid map markers\
are shown in black. When a marker maps to multiple positions in the\
genome, it is shown in a lighter color. Positions of STS markers are determined using both full sequences\
and primer information. Full sequences are aligned using The track filter can be used to change the color or include/exclude\
a set of map data within the track. This is helpful when many items\
are shown in the track display, especially when only some are relevant\
to the current task. To use the filter: \
When you have finished configuring the filter, click the\
Submit button. This track was designed and implemented by Terry Furey. Many\
thanks to the researchers who worked on these maps, and to Greg\
Schuler, Arek Kasprzyk, Wonhee Jang, and Sanja Rogic for helping\
process the data. Additional data on the individual maps can be found\
at the following links:\
SpliceAI=G|OR4F5|0.01|0.00|0.00|0.00|-32|49|-40|-31
\
Here, the pipe-separated fields contain\
\
\
SpliceAI Wildtype
\
SpliceVarDB
\
Data Access
\
\
\
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg19/splicevardb/SVADB.bb\
\ -chrom=chr21 -start=0 -end=100000000 stdout\
\
bigWigToBedGraph -chrom=chr1 -start=100000 -end=100500\
\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/spliceAi/wildtype/spliceAiAcceptorMinus.bw\
\ stdout\
\
\
These tools can be compiled from the source code or downloaded as a precompiled\
binary for your system. Instructions for downloading source code and binaries can be found\
here.Credits
\
\
References
\
Description
\
Display Conventions
\
\
\
\
Methods
\
STRchive-disease-loci.hg38.general.bed). The catalog is\
manually curated by the STRchive team from published literature and contains loci where\
tandem repeat expansions have been reported to cause or be associated with human disease.\
\
\
Data Access
\
Credits
\
References
\
Motif: $referenceMotif
Minimum pathogenic repeat: $pathogenicMin
Mode of inheritance: $inheritance
Associated disease(s): $disease\
searchIndex name\
shortLabel STRchive\
superTrack strVar pack\
track strchive\
type bigBed 9 +\
url https://strchive.org/loci/$$\
urlLabel STRchive locus page\
visibility pack\
svView Structural Variants bigBed 9 + Genome In a Bottle Structural Variants (dbVar nstd175) 3 100 0 0 0 127 127 127 0 0 0 varRep 1 longLabel Genome In a Bottle Structural Variants (dbVar nstd175)\
parent giab\
shortLabel Structural Variants\
track svView\
type bigBed 9 +\
view sv\
visibility pack\
stsMap STS Markers bed 5 + STS Markers on Genetic (blue) and Radiation Hybrid (black) Maps 1 100 0 0 0 128 128 255 0 0 0 Description
\
Methods
\
Using the Filter
\
\
Credits
\
\
\
Description
\\ This track shows structural variants (SVs) identified by long-read\ whole-genome sequencing of 101 individuals, released together with the\ GWAS SVatalog\ web tool described in Chirmade et al. 2026. GWAS SVatalog computes and\ visualizes linkage disequilibrium between these SVs and GWAS-associated\ SNPs so that investigators can assess whether a SNP association signal\ may be tagging an underlying SV.\
\\ The table contains 87,068 SVs (42,435 deletions, 41,619 insertions,\ 1,394 duplications, 912 inversions, 708 complex events; byte-identical\ duplicate records have been removed). Each SV is\ annotated with gene overlaps, GC content, repeat context, ClinGen\ haploinsufficiency / triplosensitivity scores, gnomAD per-gene constraint\ metrics (pLI, LOEUF, missense O/E), OMIM phenotype associations, ClinVar\ variant IDs, and overlaps with DGV, Decipher and ClinGen regional\ annotations.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (del) - red \
- Insertions (ins) - blue \
- Duplications (dup) - green \
- Inversions (inv) - orange \
- Complex - purple \
\ Filters are available for SV type, SV length and the number of overlapping\ genes. The detail page shows the full annotation row: gene-level constraint\ scores (per overlapping gene), ClinGen / Decipher / ClinVar region matches,\ OMIM phenotype annotations and gnomAD SV frequencies at >=90% reciprocal\ overlap. Because most genomic regions carry no clinical annotation, many\ columns will be blank for an arbitrary SV.\
\ \Methods
\\ Chirmade et al. 2026 called SVs from 101 whole-genome sequenced individuals\ enrolled in the CF Canada-SickKids Program in Individualized Therapy\ (CFIT), a predominantly-European cohort of people with cystic fibrosis.\ Each sample was sequenced with two long-read / linked-read technologies:\ PacBio continuous long reads on Sequel I (34 samples, 50x) or Sequel II\ (67 samples, 76x), and 10X Genomics linked reads on Illumina HiSeq X at\ ~30x. SVs were called per sample with pbsv v2.2.2 (pbmm2 alignments) and\ Sniffles v1.0.11 (NGMLR alignments) on the PacBio CLR data, and with Long\ Ranger, CNVnator v0.4, ERDS v1.1 and Manta v1.6.0 on the 10XG data.\ Per-platform and cross-platform calls were merged in three steps using a\ 50% reciprocal overlap rule (pbsv anchored, tagged by Sniffles on PacBio;\ Manta anchored, augmented by CNVnator, ERDS and Long Ranger deletions on\ 10XG; then a cross-platform merge with PacBio coordinates preferred), and\ SV records present in fewer than three participants were dropped. The\ released catalog contains 87,183 SVs (42,435 deletions, 41,734 insertions,\ 1,394 duplications, 912 inversions and 708 complex events); the\ pre-computed GWAS SVatalog LD analyses use a common-SV subset of 35,732\ sites against 116,870 GWAS-Catalog SNPs.\
\\ The annotation TSV sv_annotations.tsv was downloaded from the\ Zenodo companion record,\ \ zenodo.org/records/13367574. Coordinates in the TSV are 1-based closed\ and were converted to 0-based half-open BED for this track.\
\\ The step-by-step build commands (download, coordinate shift, format\ conversion, bigBed build) are recorded in the UCSC makeDoc for this track\ container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ The data can be explored interactively in table format with the\ Table Browser or the\ Data Integrator, and accessed\ programmatically through our API,\ track=chirmade101Sv.\
\\ The bigBed is available from\ our\ download server as chirmade101.bb. Example:\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/lrSv/chirmade101.bb -chrom=chr21 -start=0 -end=100000000 stdout.\
\\ The original annotation table is available on Zenodo:\ zenodo.org/records/13367574.\ The GWAS SVatalog web tool itself is at\ svatalog.research.sickkids.ca.\
\ \Credits
\\ Thanks to Chirmade, Strug and colleagues at The Hospital for Sick Children\ and the University of Toronto for releasing this annotated long-read SV\ callset alongside the GWAS SVatalog tool.\
\ \References
\ \ \\
Chirmade S, Wang Z, Mastromatteo S, Sanders E, Thiruvahindrapuram B, Nalpathamkalam T, Pellecchia G,\
Lin F, Keenan K, Patel RV et al.\
\
GWAS SVatalog: a visualization tool to aid fine-mapping of GWAS loci with structural variations.\
Heredity (Edinb). 2026 Mar;135(3):199-210.\
PMID: 41203876; PMC:
SV len: $svLen
Ins len: $insLen
Genes: $geneCount\ parent longReadVariants\ shortLabel SVatalog 101 SVs\ skipEmptyFields on\ track chirmade101Sv\ type bigBed 9 +\ visibility hide\ wgEncodeRegDnaseUwT47dHotspot T-47D Ht bigBed 6 + T-47D mammary ductal carcinoma cell line DNaseI Hotspots from ENCODE 0 100 255 124 85 255 189 170 1 0 0 regulation 1 color 255,124,85\ longLabel T-47D mammary ductal carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel T-47D Ht\ subGroups view=b_Hot cellType=T-47D treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwT47dHotspot\ type bigBed 6 +\ tabulaSapiensFullDetails Tabula Details bigBarChart Tabula sapiens full details view 0 100 0 0 0 127 127 127 0 0 0 https://cells.ucsc.edu/?ds=tabula-sapiens+all&gene=$$
\ Description
\\
This track shows data from \
The Tabula Sapiens: a multiple organ single cell\
transcriptomic atlas of humans. The dataset covers ~500,000 cells from\
a total of 24 human tissues and organs from all regions of the body using both \
droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). \
Samples were taken from the human bladder, blood,\
bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node,\
mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine,\
spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes\
264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and\
81,529 stromal cells. A total of 475 distinct cell types were identified.\
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ This track collection contains two bar chart tracks of RNA expression.\ The first track,\ Tabula Tissue Cell\ allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell\ type. The second track,\ Tabula Details\ allows cells to be grouped together and faceted on up to 7 categories: tissue,\ cell class, cell type, subtissue, sex, donor, and assay.\
\ \\ Please see \ tabula-sapiens-portal.ds.czbiohub.org \ for further interactive displays and additional data.
\ \Display Conventions and Configuration
\\ The cell types are colored by which compartment they belong to according to the following table.\ In addition, cells found in the \ Tabula Details\ track with less than 100 transcripts will be a lighter shade and less\ concentrated in color to represent a low number of transcripts.\
\ \\
| Color | \Cell Compartment | \
|---|---|
| epithelial | |
| endothelial | |
| germline | |
| immune | |
| stromal |
Methods
\ \All tissues
\ \\ 36 tissue specimens comprising 24 unique tissues and organs were collected from \ 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at\ various hospital locations in the Northern California region and transported on\ ice in less than one hour to preserve cell viability. Single cell suspensions\ from each organ were prepared in tissue expert laboratories at Stanford and\ UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to\ balance immune, stromal, epithelial, and endothelial cell types.\
\ \\ Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and\ Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were\ loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells.\ Four 384-well Smartseq2 plates were run per organ. In most organs, one plate\ was used for each compartment (epithelial, endothelial, immune, and stromal),\ however, to capture rare cells, some organ experts allocated cells across the\ four plates differently. \ Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets\ of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating\ 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq\ S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x\ reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates\ were processed, yielding 27,051 cells passing QC.\
\ \\ Tissues collected from the same donor were used to study the\ clonal distribution of T cells between tissues, to understand the tissue\ specific mutation rate in B cells, and to analyze the cell cycle state and\ proliferative potential of shared cell types across tissues. RNA splicing\ analysis was also used to characterize cell type specific splicing and its\ variation across individuals.\
\ \\ For detailed methods and information on donors for each organ or tissue \ please refer to Quake et al, 2021 or the \ Tabula Sapiens website.\
\ \Errata
\\ Some cell types, particularly in the intestines, are duplicated due to\ the use of multiple ontologies for the same cell type. In a future version,\ we plan to pool the data from these duplicates.\
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the matrixClusterColumns,\
matrixToBarChart, and bedToBigBed were used to transform these into a bar\
chart format bigBed file that can be visualized.\
The UCSC utilities can be found on\
our download server.
Credits
\Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney\ Wick, and Rachel Schwartz.
\ \References
\\
The Tabula Sapiens Consortium, Quake SR.,
\ Description
\\
This track shows data from \
The Tabula Sapiens: a multiple organ single cell\
transcriptomic atlas of humans. The dataset covers ~500,000 cells from\
a total of 24 human tissues and organs from all regions of the body using both \
droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). \
Samples were taken from the human bladder, blood,\
bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node,\
mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine,\
spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes\
264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and\
81,529 stromal cells. A total of 475 distinct cell types were identified.\
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ This track collection contains two bar chart tracks of RNA expression.\ The first track,\ Tabula Tissue Cell\ allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell\ type. The second track,\ Tabula Details\ allows cells to be grouped together and faceted on up to 7 categories: tissue,\ cell class, cell type, subtissue, sex, donor, and assay.\
\ \\ Please see \ tabula-sapiens-portal.ds.czbiohub.org \ for further interactive displays and additional data.
\ \Display Conventions and Configuration
\\ The cell types are colored by which compartment they belong to according to the following table.\ In addition, cells found in the \ Tabula Details\ track with less than 100 transcripts will be a lighter shade and less\ concentrated in color to represent a low number of transcripts.\
\ \\
| Color | \Cell Compartment | \
|---|---|
| epithelial | |
| endothelial | |
| germline | |
| immune | |
| stromal |
Methods
\ \All tissues
\ \\ 36 tissue specimens comprising 24 unique tissues and organs were collected from \ 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at\ various hospital locations in the Northern California region and transported on\ ice in less than one hour to preserve cell viability. Single cell suspensions\ from each organ were prepared in tissue expert laboratories at Stanford and\ UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to\ balance immune, stromal, epithelial, and endothelial cell types.\
\ \\ Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and\ Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were\ loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells.\ Four 384-well Smartseq2 plates were run per organ. In most organs, one plate\ was used for each compartment (epithelial, endothelial, immune, and stromal),\ however, to capture rare cells, some organ experts allocated cells across the\ four plates differently. \ Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets\ of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating\ 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq\ S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x\ reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates\ were processed, yielding 27,051 cells passing QC.\
\ \\ Tissues collected from the same donor were used to study the\ clonal distribution of T cells between tissues, to understand the tissue\ specific mutation rate in B cells, and to analyze the cell cycle state and\ proliferative potential of shared cell types across tissues. RNA splicing\ analysis was also used to characterize cell type specific splicing and its\ variation across individuals.\
\ \\ For detailed methods and information on donors for each organ or tissue \ please refer to Quake et al, 2021 or the \ Tabula Sapiens website.\
\ \Errata
\\ Some cell types, particularly in the intestines, are duplicated due to\ the use of multiple ontologies for the same cell type. In a future version,\ we plan to pool the data from these duplicates.\
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the matrixClusterColumns,\
matrixToBarChart, and bedToBigBed were used to transform these into a bar\
chart format bigBed file that can be visualized.\
The UCSC utilities can be found on\
our download server.
Credits
\Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney\ Wick, and Rachel Schwartz.
\ \References
\\
The Tabula Sapiens Consortium, Quake SR.,
\ Description
\\
This track shows data from \
The Tabula Sapiens: a multiple organ single cell\
transcriptomic atlas of humans. The dataset covers ~500,000 cells from\
a total of 24 human tissues and organs from all regions of the body using both \
droplet-based and plate-based single-cell RNA-sequencing (scRNA-seq). \
Samples were taken from the human bladder, blood,\
bone marrow, eye, fat, heart, kidney, large intestine, liver, lung, lymph node,\
mammary, muscle, pancreas, prostate, salivary gland, skin, small intestine,\
spleen, thymus, tongue, trachea, uterus, and vasculature. The dataset includes\
264,009 immune cells, 102,580 epithelial cells, 32,701 endothelial cells, and\
81,529 stromal cells. A total of 475 distinct cell types were identified.\
\
\
The read count is calculated by taking, for this cell type and gene location, the total number of\
transcript reads divided by the number of cells, and is therefore an average or mean value.\
\ This track collection contains two bar chart tracks of RNA expression.\ The first track,\ Tabula Tissue Cell\ allows cells to be grouped together and faceted on up to 3 categories: tissue, cell class, and cell\ type. The second track,\ Tabula Details\ allows cells to be grouped together and faceted on up to 7 categories: tissue,\ cell class, cell type, subtissue, sex, donor, and assay.\
\ \\ Please see \ tabula-sapiens-portal.ds.czbiohub.org \ for further interactive displays and additional data.
\ \Display Conventions and Configuration
\\ The cell types are colored by which compartment they belong to according to the following table.\ In addition, cells found in the \ Tabula Details\ track with less than 100 transcripts will be a lighter shade and less\ concentrated in color to represent a low number of transcripts.\
\ \\
| Color | \Cell Compartment | \
|---|---|
| epithelial | |
| endothelial | |
| germline | |
| immune | |
| stromal |
Methods
\ \All tissues
\ \\ 36 tissue specimens comprising 24 unique tissues and organs were collected from \ 15 human donors (TSP1-15) with a mean age of 51 years. Tissue specimens were collected at\ various hospital locations in the Northern California region and transported on\ ice in less than one hour to preserve cell viability. Single cell suspensions\ from each organ were prepared in tissue expert laboratories at Stanford and\ UCSF. For each tissue, the dissociated cells were sorted using MACS and FACS to\ balance immune, stromal, epithelial, and endothelial cell types.\
\ \\ Sequencing libraries for all tissues were prepared using 10x 3' v3.1, 10x 5' v2, and\ Smart-seq2 (SS2) protocols for Illumina sequencing. Two 10x reactions per organ were\ loaded with 7,000 cells each with the goal to yield 10,000 QC-passed cells.\ Four 384-well Smartseq2 plates were run per organ. In most organs, one plate\ was used for each compartment (epithelial, endothelial, immune, and stromal),\ however, to capture rare cells, some organ experts allocated cells across the\ four plates differently. \ Sequencing runs for droplet libraries were loaded onto the NovaSeq S4 flow cell in sets\ of 16 to 20 libraries of approximately 5,000 cells per library with the goal of generating\ 50,000 to 75,000 reads per cell. Plate libraries were run in sets of 20 plates on Novaseq\ S4 flow cells to allow generating 1M reads per cell, depending on library quality. 152 10x\ reactions were performed, yielding 454,069 cells passing QC, and 161 smartseq2 plates\ were processed, yielding 27,051 cells passing QC.\
\ \\ Tissues collected from the same donor were used to study the\ clonal distribution of T cells between tissues, to understand the tissue\ specific mutation rate in B cells, and to analyze the cell cycle state and\ proliferative potential of shared cell types across tissues. RNA splicing\ analysis was also used to characterize cell type specific splicing and its\ variation across individuals.\
\ \\ For detailed methods and information on donors for each organ or tissue \ please refer to Quake et al, 2021 or the \ Tabula Sapiens website.\
\ \Errata
\\ Some cell types, particularly in the intestines, are duplicated due to\ the use of multiple ontologies for the same cell type. In a future version,\ we plan to pool the data from these duplicates.\
\ \Data Access
\\
The raw bar chart data can be\
explored interactively with the Table\
Browser, or the Data Integrator. For\
automated analysis, the data may be queried from our
\ The expScores field for this track contains a comma-separated list of values for\ each cell type, and the expCount field is the size of the expScores array,\ which is the total number of cell types. The value in the expScores\ field corresponds to the read count for that cell type, and the order of the cell types\ is defined by the barChartBars line in the\ trackDb file for this track.\
\ \\
The cell/gene matrix and cell-level metadata was downloaded from the matrixClusterColumns,\
matrixToBarChart, and bedToBigBed were used to transform these into a bar\
chart format bigBed file that can be visualized.\
The UCSC utilities can be found on\
our download server.
Credits
\Thanks to the Tabula Sapiens Consortium who worked on producing and publishing this data set. \ The data were integrated into the UCSC Genome Browser by Jim Kent, Brittney\ Wick, and Rachel Schwartz.
\ \References
\\
The Tabula Sapiens Consortium, Quake SR.,
Description
\\ Tandem repeats are among the most polymorphic loci in the genome due to high\ rates of repeat unit insertions and deletions caused primarily by polymerase slippage\ during DNA replication.\ The Tandem Repeat Variation track contains a collection of tracks\ displaying population-level genetic variation at tandem repeat loci across\ the human genome. Short tandem repeats (STRs), also known as\ microsatellites, are consecutive repetitions of 1-6 nucleotide motifs.\ Variable Number Tandem Repeats (VNTRs) are tandem repeats of typically\ 7-100 bp.\
\ \\ This super track provides genome-wide tandem repeat annotations, allele frequency data from\ large-scale population cohorts, and curated disease-associated STR loci.
\ \Note that the gnomAD track container also includes an STR variation track, which is not part\ of the container here.
\ \Tracks in this collection
\- \
- WebSTR —\ 1.7 million STR loci from the EnsembleTR panel with allele frequency data from the\ 1000 Genomes Project (3,550 individuals across five continental populations).\ See the WebSTR track documentation for full details. \
- TRExplorer —\ 5.6 million tandem repeat loci (STRs and VNTRs) from the\ TRExplorer catalog at the Broad Institute, with population allele\ frequency data from TenK10K, HPRC256, and AoU1027 cohorts.\ See the TRExplorer track documentation for full details. \
- STRchive —\ 75 disease-associated tandem repeat loci curated from published literature, with\ pathogenic repeat thresholds, inheritance modes, and disease annotations.\ See the STRchive track documentation for full details. \
- ToMMo 61K STR —\ 174,300 STR loci with allele count distributions from 61,000 Japanese individuals\ (Tohoku Medical Megabank Organization), genotyped with Expansion Hunter.\ See the ToMMo STR track documentation for full details. \
- 1KG Vienna ONT VNTR —\ 361,362 VNTR loci with allele statistics from 1,019 samples of the 1000 Genomes\ Oxford Nanopore long-read sequencing project (Vienna), genotyped with VAMOS.\ Unlike the other STR tracks which use short-read data, this track is based on\ long-read sequencing which can span longer tandem repeat regions.\ See the Vienna VNTR track documentation for full details. \
Credits
\\ Thanks to the data providers of the individual tracks listed above.\ See each track's documentation page for specific credits.
\ varRep 0 group varRep\ longLabel Tandem Repeat Variation\ pennantIcon New red ../goldenPath/newsarch.html#041026 "Released Apr. 10, 2026"\ shortLabel Tandem Repeat Variation\ superTrack on\ track strVar\ visibility hide\ targets_view Targets bigBed Capture long-seq long-read lncRNAs 1 100 0 0 0 127 127 127 0 0 0 rna 1 longLabel Capture long-seq long-read lncRNAs\ noScoreFilter on\ parent clsLongReadRnaTrack\ shortLabel Targets\ track targets_view\ type bigBed\ view targets_view\ visibility dense\ gdcCancer TCGA Pan-Cancer bigLolly 12 + TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33) 0 100 0 0 0 127 127 127 0 0 0Description
\ \\ This track shows the genomic positions of somatic variants found through whole genome sequencing of tumors\ as part of The Cancer Genome Atlas (TCGA) by the National Cancer Institute, made available through\ the Genomic Data Commons Portal. The\ data shown here is sometimes called the "Pan-Cancer dataset", a collection of thirty-three\ TCGA projects processed in a uniform way.
\ \Display Conventions and Configuration
\\ Variants can be filtered by project ID and gender from the track details page. Pressing the\ "All" button allows the user to specify whether the checked values all have to be\ true of a particular variant, or if only one of them need be present to satisfy the filter.
\ \\ The vertical viewing range in full mode can also be used to filter what variants are shown. Variants\ that have a sampleCount more or less than the min and max values specificed in the viewing range are\ not displayed.
\ \Data access
\\ The raw data can be explored interactively with the Table Browser or the Data\ Integrator.\ \
\ For automated download and analysis, the genome annotation for all the thirty-three projects is\ stored in a bigBed file that can be downloaded from\ our\ download server. There are also bigBed files for each of the thirty-three projects in that\ directory. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here. The tool can also be used to obtain only features within a given range,\ e.g.,
\\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/gdcCancer/gdcCancer.bb -chrom=chr21 -start=0 -end=100000000 stdout\\ \ \
Methods
\ \\ All MuTect Variant calls were downloaded from the GDC portal in January 2019 and reformatted at UCSC\ to the bigBed format with a short\ script, cancerMafToBigBed.\
\ \Credits
\\ Thanks to GDC for making the TCGA data available on their web site.\
\ phenDis 1 compositeTrack on\ genderFilterType multipleListOr\ genderFilterValues male,female\ group phenDis\ longLabel TCGA Pan-Cancer mutations: 33 TCGA Cancer Projects Summary (Pan-Can 33)\ maxItems 500000\ project_idFilterType multipleListOr\ project_idFilterValues TCGA-LAML|Acute Myeloid Leukemia,TCGA-ACC|Adrenocortical carcinoma,TCGA-BLCA|Bladder Urothelial Carcinoma,TCGA-LGG|Brain Lower Grade Glioma,TCGA-BRCA|Breast invasive carcinoma,TCGA-CESC|Cervical squamous cell carcinoma and endocervical adenocarcinoma,TCGA-CHOL|Cholangiocarcinoma,TCGA-LCML|Chronic Myelogenous Leukemia,TCGA-COAD|Colon adenocarcinoma,TCGA-CNTL|Controls,TCGA-ESCA|Esophageal carcinoma,TCGA-FPPP|FFPE Pilot Phase II,TCGA-GBM|Glioblastoma multiforme,TCGA-HNSC|Head and Neck squamous cell carcinoma,TCGA-KICH|Kidney Chromophobe,TCGA-KIRC|Kidney renal clear cell carcinoma,TCGA-KIRP|Kidney renal papillary cell carcinoma,TCGA-LIHC|Liver hepatocellular carcinoma,TCGA-LUAD|Lung adenocarcinoma,TCGA-LUSC|Lung squamous cell carcinoma,TCGA-DLBC|Lymphoid Neoplasm Diffuse Large B-cell Lymphoma,TCGA-MESO|Mesothelioma,TCGA-MISC|Miscellaneous,TCGA-OV|Ovarian serous cystadenocarcinoma,TCGA-PAAD|Pancreatic adenocarcinoma,TCGA-PCPG|Pheochromocytoma and Paraganglioma,TCGA-PRAD|Prostate adenocarcinoma,TCGA-READ|Rectum adenocarcinoma,TCGA-SARC|Sarcoma,TCGA-SKCM|Skin Cutaneous Melanoma,TCGA-STAD|Stomach adenocarcinoma,TCGA-TGCT|Testicular Germ Cell Tumors,TCGA-THYM|Thymoma,TCGA-THCA|Thyroid carcinoma,TCGA-UCS|Uterine Carcinosarcoma,TCGA-UCEC|Uterine Corpus Endometrial Carcinoma,TCGA-UVM|Uveal Melanoma\ shortLabel TCGA Pan-Cancer\ track gdcCancer\ type bigLolly 12 +\ visibility hide\ gnomADPextTestis Testis bigWig 0 1 gnomAD pext Testis 0 100 170 170 170 212 212 212 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Testis.bw\ color 170,170,170\ longLabel gnomAD pext Testis\ parent gnomadPext off\ shortLabel Testis\ track gnomADPextTestis\ visibility hide\ adult_testis_models Testis models bigBed 12 + Adult Testis transcript models 4 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/cls-models-Testis.bb\ longLabel Adult Testis transcript models\ parent sample_models_view on\ shortLabel Testis models\ subGroups view=sample_models_view sample=adult_testis type=models\ track adult_testis_models\ type bigBed 12 +\ visibility squish\ adult_testis_ont_post_models Testis ONT post models bigBed 12 + Adult Testis ONT post-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/ont-Crg-CapTrap_Hv3_0+_Testis01Rep1.bb\ itemRgb on\ longLabel Adult Testis ONT post-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Testis ONT post models\ subGroups view=per_expr_models_view sample=adult_testis type=post_capture_ont_models\ track adult_testis_ont_post_models\ type bigBed 12 +\ visibility hide\ adult_testis_ont_post_reads Testis ONT post reads bam Adult Testis ONT post-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/ont-Crg-CapTrap_Hv3_0+_Testis01Rep1.bam\ longLabel Adult Testis ONT post-capture reads\ parent per_expr_reads_view off\ shortLabel Testis ONT post reads\ subGroups view=per_expr_reads_view sample=adult_testis type=post_capture_ont_reads\ track adult_testis_ont_post_reads\ type bam\ visibility hide\ adult_testis_ont_pre_models Testis ONT pre models bigBed 12 + Adult Testis ONT pre-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/ont-Crg-CapTrap_HpreCap_0+_Testis01Rep1.bb\ itemRgb on\ longLabel Adult Testis ONT pre-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Testis ONT pre models\ subGroups view=per_expr_models_view sample=adult_testis type=pre_capture_ont_models\ track adult_testis_ont_pre_models\ type bigBed 12 +\ visibility hide\ adult_testis_ont_pre_reads Testis ONT pre reads bam Adult Testis ONT pre-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/ont-Crg-CapTrap_HpreCap_0+_Testis01Rep1.bam\ longLabel Adult Testis ONT pre-capture reads\ parent per_expr_reads_view off\ shortLabel Testis ONT pre reads\ subGroups view=per_expr_reads_view sample=adult_testis type=pre_capture_ont_reads\ track adult_testis_ont_pre_reads\ type bam\ visibility hide\ adult_testis_pacbio_post_models Testis PB post models bigBed 12 + Adult Testis PacBio post-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/pacBioSII-Cshl-CapTrap_Hv3_0+_Testis01Rep1.bb\ itemRgb on\ longLabel Adult Testis PacBio post-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Testis PB post models\ subGroups view=per_expr_models_view sample=adult_testis type=post_capture_pacbio_models\ track adult_testis_pacbio_post_models\ type bigBed 12 +\ visibility hide\ adult_testis_pacbio_post_reads Testis PB post reads bam Adult Testis PacBio post-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/pacBioSII-Cshl-CapTrap_Hv3_0+_Testis01Rep1.bam\ longLabel Adult Testis PacBio post-capture reads\ parent per_expr_reads_view off\ shortLabel Testis PB post reads\ subGroups view=per_expr_reads_view sample=adult_testis type=post_capture_pacbio_reads\ track adult_testis_pacbio_post_reads\ type bam\ visibility hide\ adult_testis_pacbio_pre_models Testis PB pre models bigBed 12 + Adult Testis PacBio pre-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/pacBioSII-Cshl-CapTrap_HpreCap_0+_Testis01Rep1.bb\ itemRgb on\ longLabel Adult Testis PacBio pre-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Testis PB pre models\ subGroups view=per_expr_models_view sample=adult_testis type=pre_capture_pacbio_models\ track adult_testis_pacbio_pre_models\ type bigBed 12 +\ visibility hide\ adult_testis_pacbio_pre_reads Testis PB pre reads bam Adult Testis PacBio pre-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/pacBioSII-Cshl-CapTrap_HpreCap_0+_Testis01Rep1.bam\ longLabel Adult Testis PacBio pre-capture reads\ parent per_expr_reads_view off\ shortLabel Testis PB pre reads\ subGroups view=per_expr_reads_view sample=adult_testis type=pre_capture_pacbio_reads\ track adult_testis_pacbio_pre_reads\ type bam\ visibility hide\ gnomADPextThyroid Thyroid bigWig 0 1 gnomAD pext Thyroid 0 100 0 102 0 127 178 127 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Thyroid.bw\ color 0,102,0\ longLabel gnomAD pext Thyroid\ parent gnomadPext off\ shortLabel Thyroid\ track gnomADPextThyroid\ visibility hide\ adult_tpoola_models Tissue Pool models bigBed 12 + Tissue Pool transcript models 4 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/cls-models-TpoolA.bb\ longLabel Tissue Pool transcript models\ parent sample_models_view on\ shortLabel Tissue Pool models\ subGroups view=sample_models_view sample=adult_tpoola type=models\ track adult_tpoola_models\ type bigBed 12 +\ visibility squish\ adult_tpoola_ont_post_models Tissue Pool ONT post models bigBed 12 + Tissue Pool ONT post-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/ont-Crg-CapTrap_Hv3_0+_TpoolA01Rep1.bb\ itemRgb on\ longLabel Tissue Pool ONT post-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Tissue Pool ONT post models\ subGroups view=per_expr_models_view sample=adult_tpoola type=post_capture_ont_models\ track adult_tpoola_ont_post_models\ type bigBed 12 +\ visibility hide\ adult_tpoola_ont_post_reads Tissue Pool ONT post reads bam Tissue Pool ONT post-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/ont-Crg-CapTrap_Hv3_0+_TpoolA01Rep1.bam\ longLabel Tissue Pool ONT post-capture reads\ parent per_expr_reads_view off\ shortLabel Tissue Pool ONT post reads\ subGroups view=per_expr_reads_view sample=adult_tpoola type=post_capture_ont_reads\ track adult_tpoola_ont_post_reads\ type bam\ visibility hide\ adult_tpoola_ont_pre_models Tissue Pool ONT pre models bigBed 12 + Tissue Pool ONT pre-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/ont-Crg-CapTrap_HpreCap_0+_TpoolA01Rep1.bb\ itemRgb on\ longLabel Tissue Pool ONT pre-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Tissue Pool ONT pre models\ subGroups view=per_expr_models_view sample=adult_tpoola type=pre_capture_ont_models\ track adult_tpoola_ont_pre_models\ type bigBed 12 +\ visibility hide\ adult_tpoola_ont_pre_reads Tissue Pool ONT pre reads bam Tissue Pool ONT pre-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/ont-Crg-CapTrap_HpreCap_0+_TpoolA01Rep1.bam\ longLabel Tissue Pool ONT pre-capture reads\ parent per_expr_reads_view off\ shortLabel Tissue Pool ONT pre reads\ subGroups view=per_expr_reads_view sample=adult_tpoola type=pre_capture_ont_reads\ track adult_tpoola_ont_pre_reads\ type bam\ visibility hide\ adult_tpoola_pacbio_post_models Tissue Pool PB post models bigBed 12 + Tissue Pool PacBio post-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/pacBioSII-Cshl-CapTrap_Hv3_0+_TpoolA01Rep1.bb\ itemRgb on\ longLabel Tissue Pool PacBio post-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Tissue Pool PB post models\ subGroups view=per_expr_models_view sample=adult_tpoola type=post_capture_pacbio_models\ track adult_tpoola_pacbio_post_models\ type bigBed 12 +\ visibility hide\ adult_tpoola_pacbio_post_reads Tissue Pool PB post reads bam Tissue Pool PacBio post-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/post-capture/pacBioSII-Cshl-CapTrap_Hv3_0+_TpoolA01Rep1.bam\ longLabel Tissue Pool PacBio post-capture reads\ parent per_expr_reads_view off\ shortLabel Tissue Pool PB post reads\ subGroups view=per_expr_reads_view sample=adult_tpoola type=post_capture_pacbio_reads\ track adult_tpoola_pacbio_post_reads\ type bam\ visibility hide\ adult_tpoola_pacbio_pre_models Tissue Pool PB pre models bigBed 12 + Tissue Pool PacBio pre-capture transcript models 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/pacBioSII-Cshl-CapTrap_HpreCap_0+_TpoolA01Rep1.bb\ itemRgb on\ longLabel Tissue Pool PacBio pre-capture transcript models\ noScoreFilter on\ parent per_expr_models_view off\ shortLabel Tissue Pool PB pre models\ subGroups view=per_expr_models_view sample=adult_tpoola type=pre_capture_pacbio_models\ track adult_tpoola_pacbio_pre_models\ type bigBed 12 +\ visibility hide\ adult_tpoola_pacbio_pre_reads Tissue Pool PB pre reads bam Tissue Pool PacBio pre-capture reads 0 100 0 0 0 127 127 127 0 0 0 rna 1 bigDataUrl /gbdb/hg38/clsLongReadRna/pre-capture/pacBioSII-Cshl-CapTrap_HpreCap_0+_TpoolA01Rep1.bam\ longLabel Tissue Pool PacBio pre-capture reads\ parent per_expr_reads_view off\ shortLabel Tissue Pool PB pre reads\ subGroups view=per_expr_reads_view sample=adult_tpoola type=pre_capture_pacbio_reads\ track adult_tpoola_pacbio_pre_reads\ type bam\ visibility hide\ tommoJpSv ToMMo 333 SVs bigBed 9 + Structural Variants from 333 Japanese Individuals (ToMMo, 111 Trios) 0 100 0 0 0 127 127 127 0 0 0Description
\\ This track shows structural variants (SVs) identified by Oxford Nanopore long-read\ sequencing of 333 Japanese individuals from the Tohoku Medical Megabank (ToMMo)\ project. The 333 individuals form 111 parent-offspring trios, enabling\ Mendelian consistency checks on the SV calls. Activated T lymphocytes were used\ as a source of high-molecular-weight DNA for nanopore sequencing at a median\ coverage of 22.2x with an N50 read length of 25.8 kb.\
\\ The dataset contains 74,201 SVs (37,981 deletions and 36,220 insertions),\ merged across individuals using SURVIVOR v1.0.6. Over 95% of the SVs are\ concordant with Mendelian inheritance in the trio families.\
\ \Display Conventions and Configuration
\\ Items are colored by SV type:\
- \
- Deletions (DEL) - red \
- Insertions (INS) - blue \
\ Filters are available for SV type, SV length, and allele frequency.\ For insertions, the item is placed at the insertion site with a width of 1 bp;\ for deletions, the item spans the deleted region.\
\\ The detail page for each item shows:\
- \
- Allele Frequency: fraction of alleles carrying this variant\ (based on 444 alleles from 222 unrelated parents) \
- Allele Count / Allele Number: number of variant alleles and\ total alleles genotyped \
- Mendelian Error Rate: fraction of trio families showing\ inheritance errors for this variant \
- Families with Errors / Families Genotyped: number of families\ with Mendelian errors and total families with complete genotype calls \
Methods
\\ Otsuki et al. 2022 extracted high-molecular-weight genomic DNA from activated\ T lymphocytes of 333 individuals (111 parent-offspring trios) from the Tohoku\ Medical Megabank (ToMMo) BirThree cohort and performed Oxford Nanopore\ whole-genome sequencing on PromethION instruments with R9.4.1 flow cells\ (SQK-LSK109 libraries, Guppy v4.2.2 high-accuracy base-calling). After QC,\ median per-sample sequencing coverage was 22.2x with a read N50 of 25.8 kb.\ Reads were aligned to GRCh38 with LRA, SVs were called per sample with\ CuteSV\ v1.0.9 (-min_sv_length 50), and per-sample calls were merged with\ SURVIVOR\ v1.0.6 (1000 bp distance, type-match, no length-match) into a nonredundant\ panel of 74,201 autosomal SVs (37,981 deletions and 36,220 insertions).\ Over 95% of the SVs were concordant with Mendelian inheritance in the 111\ trio families; allele frequencies in this track are computed from the 222\ unrelated parents to avoid double-counting.\
\\ The site-only VCF tommo-JSV1-20211208-GRCh38-without-genotype-count.vcf.gz\ was downloaded from the jMorp JSV1 download page,\ \ tommo-jsv1-20211208-af.\
\\ The step-by-step build commands (download, format conversion, bigBed build)\ are recorded in the UCSC makeDoc for this track container:\ \ doc/hg38/lrSv.txt. The conversion scripts and autoSql schemas live in\ \ makeDb/scripts/lrSv, and the track configuration is in trackDb/human/lrSv.ra.\
\ \Data Access
\\ Source data is available from the\ tommo-jsv1-20211208-af download page on the jMorp\ portal (ToMMo Japanese Multi Omics Reference Panel).\
\ \Conditions of Use
\\ The information in the ToMMo jMorp database is provided only to persons\ who agree to jMorp's\ \ Conditions of Use. By using these data, you are deemed to have read\ and understood those conditions and to agree to the following obligations:\
- \
- Do not attempt to identify or contact any person who provided specimens\ used to construct the information. \
- Request permission from dist [AT] megabank [DOT] tohoku [DOT] ac [DOT] jp\ prior to using the data for commercial purposes. \
- Notify dist [AT] megabank [DOT] tohoku [DOT] ac [DOT] jp when providing\ re-edited data to any third party. \
- Cite the jMorp paper in publications that report analyses based on\ these data: Tadaka S, Kawashima J, Hishinuma E, et al.,\ "jMorp: Japanese Multi-Omics Reference Panel update report 2023",\ Nucleic Acids Research, 2023 Nov 1,\ doi:10.1093/nar/gkad978;\ please also refer to the per-dataset citation notes linked from that page. \
Credits
\\ Thanks to the Tohoku Medical Megabank Organization for making their structural\ variant calls publicly available through the jMorp data portal.\
\ \References
\ \ \ \\
Otsuki A, Okamura Y, Ishida N, Tadaka S, Takayama J, Kumada K, Kawashima J, Taguchi K, Minegishi N,\
Kuriyama S et al.\
\
Construction of a trio-based structural variation panel utilizing activated T lymphocytes and long-\
read sequencing technology.\
Commun Biol. 2022 Sep 20;5(1):991.\
PMID: 36127505; PMC:
SV len: $svLen
Ins len: $insLen
AF: $alleleFreq
AC: $AC\ parent longReadVariants\ shortLabel ToMMo 333 SVs\ track tommoJpSv\ type bigBed 9 +\ visibility hide\ tommoStr ToMMo 61k STR bigBed 9 + ToMMo 61KJPN Short Tandem Repeat Allele Counts (Expansion Hunter) 1 100 0 0 0 127 127 127 0 0 0
Description
\\ This track shows allele count distributions for 174,300 short tandem repeat (STR)\ loci genotyped across 61,000 Japanese individuals by the\ Tohoku Medical Megabank\ Organization (ToMMo). STR genotyping was performed with\ Expansion Hunter,\ which estimates repeat copy numbers from short-read whole-genome sequencing data.\
\ \\ For each locus, the track provides the repeat motif, the reference copy number, the\ mean and median copy number across the cohort, and a histogram of allele counts\ by repeat size. Click on any locus to see the allele count distribution as a\ bar chart.\
\ \Display Conventions
\\ Items are colored by expected heterozygosity, computed as\ het = 1 − ∑pi2 from allele counts\ across the 61,000 Japanese individuals:\
\- \
- Light gray – monomorphic (het = 0, single allele observed) \
- Dark blue – nearly monomorphic (0 < het < 0.1) \
- Medium blue – low diversity (het 0.1–0.3) \
- Light purple – moderate diversity (het 0.3–0.5) \
- Salmon – high diversity (het 0.5–0.7) \
- Dark red – very high diversity (het ≥ 0.7) \
- Medium gray – no allele frequency data available \
\ The allele count histogram on the detail page shows the number of alleles observed\ at each repeat copy number. The reference allele count is computed as AN minus the\ sum of all alternate allele counts.\
\ \Methods
\\ Genomic DNA was obtained from peripheral blood, saliva, or cord blood samples\ from participants in the Tohoku Medical Megabank Project. Whole-genome sequencing\ was performed on multiple Illumina and MGI platforms (HiSeq 2500, NovaSeq 6000,\ DNBSeq-T7). STR genotyping was performed with\ Expansion Hunter,\ which uses paired-end reads and read pairs spanning, flanking, and fully contained\ within repeat regions to estimate repeat copy numbers.\
\\ At UCSC, the Expansion Hunter VCF was converted to bigBed format using a\ custom Python script.\ For each STR locus, the <STRn> symbolic alleles in the VCF ALT field encode\ the repeat copy number, and the INFO/AC field provides the allele count for each.\ The reference allele count was computed as AN minus the sum of all alternate AC values.\ These were assembled into a histogram of copies=count pairs for display.\
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator.\ The data can be accessed from scripts through our\ API, the track name is tommoStr.\
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed\ file that can be downloaded from\ our download server.\ The file for this track is called tommoStr.bb.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a\ precompiled binary for your system. Instructions for downloading source code and\ binaries can be found\ here.\ The tool can also be used to obtain features within a given range, e.g.\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/strVar/tommoStr.bb\ -chrom=chr21 -start=0 -end=100000000 stdout\
\ \\ The original data can be downloaded from the\ jMorp 61KJPN-STR Downloads page.\ Use of the data requires agreement to the\ ToMMo conditions of use.\
\ \Credits
\\ Thanks to the Tohoku Medical Megabank Organization and the participants of the\ ToMMo cohort study for making this data publicly available.\
\ \References
\\
Tadaka S, Hishinuma E, Komaki S, Motoike IN, Kawashima J,\
Saigusa D, Inoue J, Takayama J, Okamura Y, Aoki Y\
et al.\
\
jMorp updates in 2020: large enhancement of multi-omics data\
resources on the general Japanese population.\
Nucleic Acids Res. 2021 Jan 8;49(D1):D536-D544.\
PMID: 33179747; PMC:
\
Tadaka S, Kawashima J, Hishinuma E, Saito S, Okamura Y,\
Otsuki A, Kojima K, Komaki S, Aoki Y, Kanno T et al.\
\
jMorp: Japanese Multi-Omics Reference Panel update report\
2023.\
Nucleic Acids Res. 2024 Jan 5;52(D1):D622-D632.\
PMID: 37930845; PMC:
Ref copies: $numCopies
Mean: $mean, Median: $median
Heterozygosity: $het\ scoreFilter 0\ searchIndex name\ shortLabel ToMMo 61k STR\ superTrack strVar dense\ track tommoStr\ type bigBed 9 +\ visibility dense\ transMapV5 TransMap V5 TransMap Alignments Version 5 0 100 0 0 0 127 127 127 0 0 0
Description
\ \\ These tracks contain cDNA and gene alignments produced by\ the TransMap cross-species alignment algorithm\ from other vertebrate species in the UCSC Genome Browser.\ For closer evolutionary distances, the alignments are created using\ syntenically filtered LASTZ or BLASTZ alignment chains, resulting\ in a prediction of the orthologous genes in human. For more distant\ organisms, reciprocal best alignments are used.\
\ \ TransMap maps genes and related annotations in one species to another\ using synteny-filtered pairwise genome alignments (chains and nets) to\ determine the most likely orthologs. For example, for the mRNA TransMap track\ on the human assembly, more than 400,000 mRNAs from 25 vertebrate species were\ aligned at high stringency to the native assembly using BLAT. The alignments\ were then mapped to the human assembly using the chain and net alignments\ produced using BLASTZ, which has higher sensitivity than BLAT for diverged\ organisms.\\ Compared to translated BLAT, TransMap finds fewer paralogs and aligns more UTR\ bases.\
\ \Display Conventions and Configuration
\ \\ This track follows the display conventions for \ PSL alignment tracks.
\\ This track may also be configured to display codon coloring, a feature that\ allows the user to quickly compare cDNAs against the genomic sequence. For more \ information about this option, click \ here.\ Several types of alignment gap may also be colored; \ for more information, click \ here.\ \
Methods
\ \\
- \
- Source transcript alignments were obtained from vertebrate organisms\ in the UCSC Genome Browser Database. BLAT alignments of RefSeq Genes, GenBank \ mRNAs, and GenBank Spliced ESTs to the cognate genome, along with UCSC Genes,\ were used as available.\
- For all vertebrate assemblies that had BLASTZ alignment chains and\
nets to the human (hg38) genome, a subset of the alignment chains were\
selected as follows:\
- \
- For organisms whose branch distance was no more than 0.5\ (as computed by phyloFit, see Conservation track description for details),\ syntenic filtering was used. Reciprocal best nets were used if available;\ otherwise, nets were selected with the netfilter -syn command.\ The chains corresponding to the selected nets were used for mapping.\
- For more distant species, where the determination of synteny is difficult,\ the full set of chains was used for mapping. This allows for more genes to\ map at the expense of some mapping to paralogous regions. The\ post-alignment filtering step removes some of the duplications.\
- The pslMap program was used to do a base-level projection of\ the source transcript alignments via the selected chains\ to the human genome, resulting in pairwise alignments of the source transcripts to\ the genome.\
- The resulting alignments were filtered with pslCDnaFilter\ with a global near-best criteria of 0.5% in finished genomes\ (human and mouse) and 1.0% in other genomes. Alignments\ where less than 20% of the transcript mapped were discarded.\
\ To ensure unique identifiers for each alignment, cDNA and gene accessions were\ made unique by appending a suffix for each location in the source genome and\ again for each mapped location in the destination genome. The format is:\
\ accession.version-srcUniq.destUniq\\ \ Where srcUniq is a number added to make each source alignment unique, and\ destUniq is added to give the subsequent TransMap alignments unique\ identifiers.\ \
\ For example, in the cow genome, there are two alignments of mRNA BC149621.1.\ These are assigned the identifiers BC149621.1-1 and BC149621.1-2.\ When these are mapped to the human genome, BC149621.1-1 maps to a single\ location and is given the identifier BC149621.1-1.1. However, BC149621.1-2\ maps to two locations, resulting in BC149621.1-2.1 and BC149621.1-2.2. Note\ that multiple TransMap mappings are usually the result of tandem duplications, where both\ chains are identified as syntenic.\
\ \Data Access
\ \\ The raw data for these tracks can be accessed interactively through the\ Table Browser or the\ Data Integrator.\ For automated analysis, the annotations are stored in\ bigPsl files (containing a\ number of extra columns) and can be downloaded from our\ download server, \ or queried using our API. For more \ information on accessing track data see our \ Track Data Access FAQ.\ The files are associated with these tracks in the following way:\
- \
- TransMap Ensembl - hg38.ensembl.transMapV5.bigPsl \
- TransMap RefGene - hg38.refseq.transMapV5.bigPsl \
- TransMap RNA - hg38.rna.transMapV5.bigPsl \
- TransMap ESTs - hg38.est.transMapV5.bigPsl \
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/transMap/V5/hg38.refseq.transMapV5.bigPsl\ -chrom=chr6 -start=0 -end=1000000 stdout\ \ \
Credits
\ \\ This track was produced by Mark Diekhans at UCSC from cDNA and EST sequence data\ submitted to the international public sequence databases by \ scientists worldwide and annotations produced by the RefSeq,\ Ensembl, and GENCODE annotations projects.
\ \References
\\
Siepel A, Diekhans M, Brejová B, Langton L, Stevens M, Comstock CL, Davis C, Ewing B, Oommen S,\
Lau C et al.\
\
Targeted discovery of novel human exons by comparative genomics.\
Genome Res. 2007 Dec;17(12):1763-73.\
PMID: 17989246; PMC:
\ Stanke M, Diekhans M, Baertsch R, Haussler D.\ \ Using native and syntenically mapped cDNA alignments to improve de novo gene finding.\ Bioinformatics. 2008 Mar 1;24(5):637-44.\ PMID: 18218656\
\ \\
Zhu J, Sanborn JZ, Diekhans M, Lowe CB, Pringle TH, Haussler D.\
\
Comparative genomics search for losses of long-established genes on the human lineage.\
PLoS Comput Biol. 2007 Dec;3(12):e247.\
PMID: 18085818; PMC:
Description
\\ The TRExplorer track displays 5,599,658 tandem repeat (TR) loci from the\ TRExplorer\ catalog. Tandem repeats are adjacent copies of a short DNA sequence motif; they include\ short tandem repeats (STRs, motifs of 1–6 bp) and variable number tandem repeats\ (VNTRs, longer motifs). TRs are among the most polymorphic and mutationally active loci\ in the human genome, contributing to gene expression variation, complex disease risk,\ and over 60 known Mendelian disorders.
\ \\ The catalog integrates loci from multiple sources, including perfect repeats in the\ reference genome, polymorphic TRs discovered in T2T assemblies and the Illumina 174k\ cohort, HipSTR catalog loci, and curated disease-associated repeat expansions. Each\ locus is annotated with repeat purity, gene context, disease associations, and\ population allele frequency data from up to three cohorts.
\ \Display Conventions
\\ Items are colored by expected heterozygosity, computed as\ het = 1 − ∑pi2 from allele counts\ pooled across the TenK10K and HPRC256 cohorts:
\- \
- Light gray – monomorphic (het = 0, single allele observed) \
- Dark blue – nearly monomorphic (0 < het < 0.1) \
- Medium blue – low diversity (het 0.1–0.3) \
- Light purple – moderate diversity (het 0.3–0.5) \
- Salmon – high diversity (het 0.5–0.7) \
- Dark red – very high diversity (het ≥ 0.7) \
- Medium gray – no allele frequency data available \
\ Items are labeled by the repeat motif sequence (truncated with “..” for\ motifs longer than 25 characters). The BED score reflects repeat purity (0–1000).\ Hovering over an item shows the full motif, motif size, number of reference copies,\ repeat purity, gene annotation, and data source.
\ \\ Clicking an item opens the details page, which includes a link to the corresponding\ TRExplorer locus\ page with interactive allele frequency visualizations.
\ \Population Frequency Data
\\ Allele frequency histograms are available for two cohorts where genotyping was\ performed:
\- \
- TenK10K – 1,925 short-read genomes of European\ ancestry genotyped using ExpansionHunter \
- HPRC256 – 256 diverse HiFi PacBio genomes from\ the Human Pangenome Reference\ Consortium genotyped using TRGT-LPS \
\ For each cohort, two parallel fields store allele sizes (in repeat copy numbers) and\ their corresponding counts, preserving the original order for histogram visualization.\ Summary allele counts are also available for the AoU1027\ cohort (1,027 HiFi PacBio samples from the All of Us Research Program\ genotyped using TRGT-LPS).
\ \Data Sources
\\ Loci in this catalog were compiled from multiple sources:
\- \
- PerfectRepeatsInReference – 4.4M loci with perfect tandem repeats in\ the GRCh38 reference \
- PolymorphicTRsInT2TAssemblies – TRs polymorphic across T2T\ assemblies \
- Illumina174kPolymorphicTRs – TRs polymorphic in the Illumina 174k\ cohort \
- HipSTRCatalog – loci from the HipSTR reference panel \
- AdottoTRsFromDanzi2025 – TRs from Danzi et al. 2025 \
- KnownDiseaseAssociatedLoci – curated disease-associated repeat\ expansion loci \
- Additional sources: VamosV3, Hause2016, Manigbas2024, Garg2021, Tanudisastro2025,\ Sulovari2021, Annear2021, Mukamel2021, ClinvarIndelsThatAreTRs2025,\ KnownFunctionalVNTRs \
Methods
\\ The TRExplorer catalog was built by merging tandem repeat annotations from multiple\ reference-based and population-based discovery approaches. For each locus, the repeat\ motif, copy number, and purity were determined from the GRCh38 reference sequence.\ Gene annotations were derived from MANE Select transcripts (with fallback to Gencode).\ Population allele frequencies were obtained by genotyping large cohorts using\ ExpansionHunter and other TR genotyping tools.
\ \\ For the UCSC Genome Browser track, the source catalog (TSV format) was converted to\ bigBed format. Coordinates in the source data are already 0-based half-open (BED\ convention). Allele frequency histograms were split into parallel size and count fields\ to facilitate visualization. Items are colored by expected heterozygosity.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated\ analysis, the data may be queried from our\ REST API. The underlying bigBed\ file can be downloaded from our\ download\ server.
\ \\ The complete TRExplorer dataset and interactive tools are available from the\ TRExplorer web\ portal at the Broad Institute.
\ \Credits
\Thanks to Ben Weisburd, Egor Dolzhenko, and the TRExplorer team\ for making these data available.
\ \References
\\ Weisburd B, Dolzhenko E, Bennett MF, Danzi MC, Xu IRL,\ Tanudisastro H, Gu B, English A, Hiatt L, Mokveld T\ et al.\ \ TRExplorer: A comprehensive catalog of tandem repeat variation in the human genome.\ bioRxiv. 2024.\ doi: 10.1101/2024.10.04.615514\
\ varRep 1 bigDataUrl /gbdb/hg38/strVar/trexplorer.bb\ detailsScript.histogram.hprcAlleleHist {"title":"HPRC256 Allele Distribution","xLabel":"Allele size (repeat copies)"}\ detailsScript.histogram.tenKAlleleHist {"title":"TenK10K Allele Distribution","xLabel":"Allele size (repeat copies)"}\ filter.het 0:1\ filterByRange.het on\ filterLimits.het 0:1\ itemRgb on\ longLabel TRExplorer V2 Tandem Repeat Catalog\ mouseOver Motif: $referenceMotif ($motifSize bp)Copies in ref: $numRepeats
Purity: $repeatPurity
Heterozygosity: $het
Gene: $geneName ($geneRegion)\ searchIndex name\ shortLabel TRExplorer\ superTrack strVar dense\ track trexplorer\ type bigBed 9 +\ urlLabel TRExplorer locus page\ urls locusId="https://trexplorer.broadinstitute.org/index.html?#showRs=1&q=$$"\ visibility dense\ tRNAs tRNA Genes bed 6 + Transfer RNA Genes Identified with tRNAscan-SE 0 100 0 20 150 127 137 202 0 0 0
Description
\\ This track displays tRNA genes predicted by using \ tRNAscan-SE v.1.23. \
\\ tRNAscan-SE is an integrated program that uses tRNAscan (Fichant) and an A/B box motif detection \ algorithm (Pavesi) as pre-filters to obtain an initial list of tRNA candidates. \ The program then filters these candidates with a covariance model-based \ search program \ COVE (Eddy) to obtain a highly specific set of primary sequence \ and secondary structure predictions that represent 99-100% of true tRNAs \ with a false positive rate of fewer than 1 per 15 gigabases.
\\ Detailed tRNA annotations for eukaryotes, bacteria, and archaea are available at\ Genomic tRNA Database (GtRNAdb). \
\\ What does the tRNAscan-SE score mean? Anything with a score above 20 bits is likely to be\ derived from a tRNA, although this does not indicate whether the tRNA gene still encodes a \ functional tRNA molecule (i.e. tRNA-derived SINES probably do not function in the ribosome in translation).\ Vertebrate tRNAs with scores of >60.0 (bits) are likely to encode functional tRNA genes, and \ those with scores below ~45 have sequence or structural features that indicate they probably are\ no longer involved in translation. tRNAs with scores between 45-60 bits are in the "grey" zone, and may\ or may not have all the required features to be functional. In these cases, tRNAs should be inspected\ carefully for loss of specific primary or secondary structure features (usually in alignments with other\ genes of the same isotype), in order to make a better educated guess. These rough score range guides \ are not exact, nor are they based on specific biochemical studies of atypical tRNA features,\ so please treat them accordingly.\
\\ Please note that tRNA genes marked as "Pseudo" are low scoring predictions that are mostly pseudogenes or \ tRNA-derived elements. These genes do not usually fold into a typical cloverleaf tRNA secondary \ structure and the provided images of the predicted secondary structures may appear rotated.\
\ \Credits
\\ Both tRNAscan-SE and GtRNAdb are maintained by the\ Lowe Lab at UCSC.\
\\ Cove-predicted tRNA secondary structures were rendered by NAVIEW (c) 1988 Robert E. Bruccoleri.\
\ \References
\\ When making use of these data, please cite the following articles:
\\
Chan PP, Lowe TM. \
GtRNAdb: a database of transfer RNA genes detected in genomic sequence.\
Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7.\
PMID: 18984615; PMC:
\
Eddy SR, Durbin R. \
\
RNA sequence analysis using covariance models.\
Nucleic Acids Res. 1994 Jun 11;22(11):2079-88.\
PMID: 8029015; PMC:
\ Fichant GA, Burks C. \ \ Identifying potential tRNA genes in genomic DNA sequences.\ J Mol Biol. 1991 Aug 5;220(3):659-71.\ PMID: 1870126\
\ \\
Lowe TM, Eddy SR. \
\
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.\
Nucleic Acids Res. 1997 Mar 1;25(5):955-64.\
PMID: 9023104; PMC:
\
Pavesi A, Conterio F, Bolchi A, Dieci G, Ottonello S.\
\
Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix\
analysis of transcriptional control regions.\
Nucleic Acids Res. 1994 Apr 11;22(7):1247-56.\
PMID: 8165140; PMC:
Description
\This track shows various types of alternative splicing and other\ events that result in more than a single transcript from the same\ gene. The label by an item describes the type of event. The events are:
\- \
- Alternate Promoter (altPromoter) - Transcription starts at multiple places. The altPromoter extends from 100 bases before to 50 bases after transcription start.\
- Alternate Finish Site (altFinish) - Transcription ends at multiple places.\
- Cassette Exon (cassetteExon) - Exon is present in some transcripts but \ not others. These are found by looking for exons that overlap an intron in the \ same transcript.\
- Retained Intron (retainedIntron) - Introns are spliced out in some \ transcripts but not others. In some cases, particularly when the intron is near \ the 3' end, this can reflect an incompletely processed transcript rather than \ a true alt-splicing event.\
- Overlapping Exon (bleedingExon) - Initial or terminal exons overlap \ in an intron in another transcript. These often are associated with incompletely \ processed transcripts.\
- Alternate 3' End (altThreePrime) - Variations on the 3' end of an intron.\
- Alternate 5' End (altFivePrime) - Variations on the 5' end of an intron.\
- Intron Ends have AT/AC (atacIntron) - An intron with AT/AC ends rather than \ the usual GT/AG. These are associated with the minor spliceosome.\
- Strange Intron Ends (strangeSplice) - An intron with ends that are not \ GT/AG, GC/AG, or AT/AC. These are usually artifacts of some sort due to \ sequencing error or polymorphism.\
Credits
\This track is based on an analysis by the txgAnalyse program of splicing graphs\ produced by the txGraph program. Both of these programs were written by Jim\ Kent at UCSC.
\ genes 1 color 90,0,150\ group genes\ longLabel Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes\ noScoreFilter .\ shortLabel UCSC Alt Events\ track knownAlt\ type bed 6 .\ visibility hide\ umap Umap bigWig Single-read and multi-read mappability by Umap 2 100 0 0 0 127 127 127 0 0 0Description
\\ These tracks indicate regions with uniquely mappable reads of particular lengths before and after\ bisulfite conversion. Both Umap and Bismap tracks contain single-read mappability and multi-read\ mappability tracks for four different read lengths: 24 bp, 36 bp, 50 bp, and 100 bp.
\\ You can use these tracks for many purposes, including filtering unreliable signal from\ sequencing assays. The Bismap track can help filter unreliable signal from sequencing assays\ involving bisulfite conversion, such as whole-genome bisulfite sequencing or reduced representation\ bisulfite sequencing.
\ \ \Bismap single-read and multi-read mappability
\- \
- Bismap single-read mappability \
- \
These tracks mark any region of the bisulfite-converted genome that is uniquely mappable by\ at least one k-mer on the specified strand. Mappability of the forward strand was\ generated by converting all instances of cytosine to thymine. Similarly, mappability of the\ reverse strand was generated by converting all instances of guanine to adenine.
\To calculate the single-read mappability, you must find the overlap of a given region with\ the region that is uniquely mappable on both strands. Regions not uniquely mappable on both\ strands or have a low multi-read mappability might bias the downstream analysis.
\
- Bismap multi-read mappability \
- \
These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable. Multi-read mappability track is calculated for\ k-mers that are uniquely mappable on both strands, and thus there is no strand\ specification.
\
Umap single-read and multi-read mappability
\- \
- Umap single-read mappability \
- \
These tracks mark any region of the genome that is uniquely mappable by at least one\ k-mer. To calculate the single-read mappability, you must find the overlap of a given\ region with this track.
\
- Umap multi-read mappability \
- \
These tracks represent the probability that a randomly selected k-mer which overlaps\ with a given position is uniquely mappable.
\
For greater detail and explanatory diagrams, see the\ preprint, the\ Umap and Bismap project website, or the\ Umap and Bismap software\ documentation.\ \
Data Access
\\ The raw data can be explored interactively with the Table Browser, or the Data Integrator. For automated analysis, genome annotation is stored in a bigBed\ or bigWig file that can be downloaded from the\ download\ server. Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed or bigWigToWig, which can be compiled from the source code or\ downloaded as a precompiled binary for your system. Instructions for downloading source code and\ binaries can be found here.\ The tool can also be used to obtain only features within a given range, for example:
\ bigBedToBed -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Unique.Mappability.bb stdout\\ bigWigToWig -chrom=chr6 -start=0 -end=1000000\ http://hgdownload.soe.ucsc.edu/gbdb/hg38/hoffmanMappability/k24.Umap.MultiTrackMappability.bw\ stdout\
\ Please refer to our mailing list archives for questions, or our\ Data Access FAQ for more\ information.
\ \Credits
\\ Anshul Kundaje (Stanford\ University) created the original Umap software in MATLAB. The original Umap repository is available\ here.\ Mehran Karimzadeh (Michael Hoffman\ lab, Princess Margaret Cancer Centre) implemented the Python version of Umap and added features,\ including Bismap.
\ \References
\\ Karimzadeh M, Ernst C, Kundaje A, Hoffman MM.,\ Umap and Bismap:\ quantifying genome and methylome mappability\ bioRxiv bioRxiv, p. 095463, 2016.; doi: https://doi.org/10.1101/095463.
\ map 0 compositeTrack on\ group map\ html mappability\ longLabel Single-read and multi-read mappability by Umap\ parent mappability\ shortLabel Umap\ subGroup1 view Views SR=Single-read MR=Multi-read\ track umap\ type bigWig\ visibility full\ umapBigBed Umap bigBed 6 Single-read and multi-read mappability by Umap 4 100 0 0 0 127 127 127 0 0 0 map 1 longLabel Single-read and multi-read mappability by Umap\ parent umap on\ shortLabel Umap\ track umapBigBed\ type bigBed 6\ view SR\ visibility squish\ umapBigWig Umap bigWig Single-read and multi-read mappability by Umap 2 100 0 0 0 127 127 127 0 0 0 map 0 longLabel Single-read and multi-read mappability by Umap\ parent umap on\ shortLabel Umap\ track umapBigWig\ type bigWig\ view MR\ viewLimits 0:1\ visibility full\ uniprot UniProt bigBed 12 + UniProt SwissProt/TrEMBL Protein Annotations 0 100 0 0 0 127 127 127 0 0 0Description
\ \\
This track shows protein sequences and annotations on them from the
\ UniProt/SwissProt data has been curated from scientific publications by the UniProt staff,\ UniProt/TrEMBL data has been predicted by various computational algorithms.\ The annotations are divided into multiple subtracks, based on their "feature type" in UniProt.\ The first two subtracks below - one for SwissProt, one for TrEMBL - show the\ alignments of protein sequences to the genome, all other tracks below are the protein annotations\ mapped through these alignments to the genome.\
\ \| Track Name | \Description | \
|---|---|
| UCSC Alignment, SwissProt = curated protein sequences | \Protein sequences from SwissProt mapped to the genome. All other\ tracks are (start,end) SwissProt annotations on these sequences mapped\ through this alignment. Even protein sequences without a single curated \ annotation (splice isoforms) are visible in this track. Each UniProt protein \ has one main isoform, which is colored in dark. Alternative isoforms are \ sequences that do not have annotations on them and are colored in light-blue. \ They can be hidden with the TrEMBL/Isoform filter (see below). |
| UCSC Alignment, TrEMBL = predicted protein sequences | \Protein sequences from TrEMBL mapped to the genome. All other tracks\ below are (start,end) TrEMBL annotations mapped to the genome using\ this track. This track is hidden by default. To show it, click its\ checkbox on the track configuration page. |
| UniProt Signal Peptides | \Regions found in proteins destined to be secreted, generally cleaved from mature protein. | \
| UniProt Extracellular Domains | \Protein domains with the comment "Extracellular". | \
| UniProt Transmembrane Domains | \Protein domains of the type "Transmembrane". | \
| UniProt Cytoplasmic Domains | \Protein domains with the comment "Cytoplasmic". | \
| UniProt Polypeptide Chains | \Polypeptide chain in mature protein after post-processing. | \
| UniProt Regions of Interest | \Regions that have been experimentally defined, such as the role of a region in mediating protein-protein interactions or some other biological process. | \
| UniProt Domains | \Protein domains, zinc finger regions and topological domains. | \
| UniProt Disulfide Bonds | \Disulfide bonds. | \
| UniProt Amino Acid Modifications | \Glycosylation sites, modified residues and lipid moiety-binding regions. | \
| UniProt Amino Acid Mutations | \Mutagenesis sites and sequence variants. | \
| UniProt Protein Primary/Secondary Structure Annotations | \Beta strands, helices, coiled-coil regions and turns. | \
| UniProt Sequence Conflicts | \Differences between Genbank sequences and the UniProt sequence. | \
| UniProt Repeats | \Regions of repeated sequence motifs or repeated domains. | \
| UniProt Other Annotations | \All other annotations, e.g. compositional bias | \
\ For consistency and convenience for users of mutation-related tracks,\ the subtrack "UniProt/SwissProt Variants" is a copy of the track\ "UniProt Variants" in the track group "Phenotype and Literature", or \ "Variation and Repeats", depending on the assembly.\
\ \Display Conventions and Configuration
\ \\ Genomic locations of UniProt/SwissProt annotations are labeled with a short name for\ the type of annotation (e.g. "glyco", "disulf bond", "Signal peptide"\ etc.). A click on them shows the full annotation and provides a link to the UniProt/SwissProt\ record for more details. TrEMBL annotations are always shown in \ light blue, except in the Signal Peptides,\ Extracellular Domains, Transmembrane Domains, and Cytoplamsic domains subtracks.
\ \\ Mouse over a feature to see the full UniProt annotation comment. For variants, the mouse over will\ show the full name of the UniProt disease acronym.\
\ \\ The subtracks for domains related to subcellular location are sorted from outside to inside of \ the cell: Signal peptide, \ extracellular, \ transmembrane, and cytoplasmic.\
\ \\ Features in the "UniProt Modifications" (modified residues) track are drawn in \ light green. Disulfide bonds are shown in \ dark grey. Topological domains\ in maroon and zinc finger regions in \ olive green.\
\ \\ Duplicate annotations are removed as far as possible: if a TrEMBL annotation\ has the same genome position and same feature type, comment, disease and\ mutated amino acids as a SwissProt annotation, it is not shown again. Two\ annotations mapped through different protein sequence alignments but with the same genome\ coordinates are only shown once.
\ \On the configuration page of this track, you can choose to hide any TrEMBL annotations.\ This filter will also hide the UniProt alternative isoform protein sequences because\ both types of information are less relevant to most users. Please contact us if you\ want more detailed filtering features.
\ \Note that for the human hg38 assembly and SwissProt annotations, there\
also is a
Methods
\ \\ Briefly, UniProt protein sequences were aligned to the transcripts associated\ with the protein, the top-scoring alignments were retained, and the result was\ projected to the genome through a transcript-to-genome alignment.\ Depending on the genome, the transcript-genome alignments was either\ provided by the source database (NBCI RefSeq), created at UCSC (UCSC RefSeq) or\ derived from the transcripts (Ensembl/Augustus). The transcript set is NCBI\ RefSeq for hg38, UCSC RefSeq for hg19 (due to alt/fix haplotype misplacements \ in the NCBI RefSeq set on hg19). For other genomes, RefSeq, Ensembl and Augustus \ are tried, in this order. The resulting protein-genome alignments of this process \ are available in the file formats for liftOver or pslMap from our data archive\ (see "Data Access" section below).\
\ \An important step of the mapping process protein -> transcript ->\ genome is filtering the alignment from protein to transcript. Due to\ differences between the UniProt proteins and the transcripts (proteins were\ made many years before the transcripts were made, and human genomes have\ variants), the transcript with the highest BLAST score when aligning the\ protein to all transcripts is not always the correct transcript for a protein\ sequence. Therefore, the protein sequence is aligned to only a very short list\ of one or sometimes more transcripts, selected by a three-step procedure:\
- \
- Use transcripts directly annotated by UniProt: for organisms that have a RefSeq transcript track,\ proteins are aligned to the RefSeq transcripts that are annotated\ by UniProt for this particular protein.\
- Use transcripts for NCBI Gene ID annotated by UniProt: If no transcripts are annotated on the\ protein, or the annotated ones have been deprecated by NCBI, but a NCBI Gene ID is\ annotated, the RefSeq transcripts for this Gene ID are used. This can result in multiple matching transcripts for a protein.\
- Use best matching transcript: If no NCBI Gene is\ annotated, then BLAST scores are used to pick the transcripts. There can be multiple transcripts for one\ protein, as their coding sequences can be identical. All transcripts within 1% of the highest observed BLAST score are used.\
\ For strategy 2 and 3, many of the transcripts found do not differ in coding\ sequence, so the resulting alignments on the genome will be identical.\ Therefore, any identical alignments are removed in a final filtering step. The\ details page of these alignments will contain a list of all transcripts that\ result in the same protein-genome alignment. On hg38, only a handful of edge\ cases (pseudogenes, very recently added proteins) remain in 2023 where strategy\ 3 has to be used.
\ \In other words, when an NCBI or UCSC RefSeq track is used for the mapping and to align a\ protein sequence to the correct transcript, we use a three stage process:\
- \
- If UniProt has annotated a given RefSeq transcript for a given protein\ sequence, the protein is aligned to this transcript. Any difference in the\ version suffix is tolerated in this comparison. \
- If no transcript is annotated or the transcript cannot be found in the\ NCBI/UCSC RefSeq track, the UniProt-annotated NCBI Gene ID is resolved to a\ set of NCBI RefSeq transcript IDs via the most current version of NCBI\ genes tables. Only the top match of the resulting alignments and all\ others within 1% of its score are used for the mapping.\
- If no transcript can be found after step (2), the protein is aligned to all transcripts,\ the top match, and all others within 1% of its score are used.\
This system was designed to resolve the problem of incorrect mappings of\ proteins, mostly on hg38, due to differences between the SwissProt\ sequences and the genome reference sequence, which has changed since the\ proteins were defined. The problem is most pronounced for gene families\ composed of either very repetitive or very similar proteins. To make sure that\ the alignments always go to the best chromosome location, all _alt and _fix\ reference patch sequences are ignored for the alignment, so the patches are\ entirely free of UniProt annotations. Please contact us if you have feedback on\ this process or example edge cases. We are not aware of a way to evaluate the\ results completely and in an automated manner.
\\
Proteins were aligned to transcripts with TBLASTN, converted to PSL, filtered\
with pslReps (93% query coverage, keep alignments within top 1% score), lifted to genome\
positions with pslMap and filtered again with pslReps. UniProt annotations were\
obtained from the UniProt XML file. The UniProt annotations were then mapped to the\
genome through the alignment described above using the pslMap program. This approach\
draws heavily on the LS-SNP pipeline by Mark Diekhans.\
Like all Genome Browser source code, the main script used to build this track\
can be found on
Older releases
\\ This track is automatically updated on an ongoing basis, every 2-3 months.\ The current version name is always shown on the track details page, it includes the\ release of UniProt, the version of the transcript set and a unique MD5 that is\ based on the protein sequences, the transcript sequences, the mapping file\ between both and the transcript-genome alignment. The exact transcript\ that was used for the alignment is shown when clicking a protein alignment\ in one of the two alignment tracks.\
\ \\
For reproducibility of older analysis results and for manual inspection, previous versions of this track\
are available for browsing in the form of the
Data Access
\ \\ The raw data of the current track can be explored interactively with the\ Table Browser, or the\ Data Integrator.\ For automated analysis, the genome annotation is stored in a bigBed file that \ can be downloaded from the\ download server.\ The exact filenames can be found in the \ track configuration file. \ Annotations can be converted to ASCII text by our tool bigBedToBed\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, for example:\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/uniprot/unipStruct.bb -chrom=chr6 -start=0 -end=1000000 stdout \
\ Please refer to our\ mailing list archives\ for questions, or our\ Data Access FAQ\ for more information. \ \ \\ \
Lifting from UniProt to genome coordinates in pipelines
\To facilitate mapping protein coordinates to the genome, we provide the\ alignment files in formats that are suitable for our command line tools. Our\ command line programs liftOver or pslMap can be used to map\ coordinates on protein sequences to genome coordinates. The filenames are\ unipToGenome.over.chain.gz (liftOver) and unipToGenomeLift.psl.gz (pslMap).
\ \Example commands:\
\ wget -q https://hgdownload.soe.ucsc.edu/goldenPath/archive/hg38/uniprot/2022_03/unipToGenome.over.chain.gz\ wget -q https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/liftOver\ chmod a+x liftOver\ echo 'Q99697 1 10 annotationOnProtein' > prot.bed\ liftOver prot.bed unipToGenome.over.chain.gz genome.bed\ cat genome.bed\\ \ \
Credits
\ \\ This track was created by Maximilian Haeussler at UCSC, with a lot of input from Chris\ Lee, Mark Diekhans and Brian Raney, feedback from the UniProt staff, Alejo\ Mujica, Regeneron Pharmaceuticals and Pia Riestra, GeneDx. Thanks to UniProt for making all data\ available for download.\
\ \References
\ \\
UniProt Consortium.\
\
Reorganizing the protein space at the Universal Protein Resource (UniProt).\
Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5.\
PMID: 22102590; PMC:
\ Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A.\ \ The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure\ information on human protein variants.\ Hum Mutat. 2004 May;23(5):464-70.\ PMID: 15108278\
\ genes 1 allButtonPair on\ compositeTrack on\ dataVersion /gbdb/$D/uniprot/version.txt\ exonNumbers off\ group genes\ hideEmptySubtracks off\ itemRgb on\ longLabel UniProt SwissProt/TrEMBL Protein Annotations\ shortLabel UniProt\ track uniprot\ type bigBed 12 +\ urls uniProtId="http://www.uniprot.org/uniprot/$$#section_features" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility hide\ spMut UniProt Variants bigBed 12 + UniProt/SwissProt Amino Acid Substitutions 0 100 0 0 0 127 127 127 0 0 0Description
\ \\
\
\
NOTE:
\
This track is intended for use primarily by physicians and other\
professionals concerned with genetic disorders, by genetics researchers, and\
by advanced students in science and medicine. While the genome browser database\
is open to the public, users seeking information about a personal medical or\
genetic condition are urged to consult with a qualified physician for\
diagnosis and for answers to personal questions.
\ This track shows the genomic positions of natural and artifical amino acid variants\ in the UniProt/SwissProt database.\ The data has been curated from scientific publications by the UniProt staff.\
\ \Display Conventions and Configuration
\ \\ Genomic locations of UniProt/SwissProt variants are labeled with the amino acid\ change at a given position and, if known, the abbreviated disease name. A\ "?" is used if there is no disease annotated at this location, but the\ protein is described as being linked to only a single disease in UniProt.\
\ \\ Mouse over a mutation to see the UniProt comments.\
\ \\ Artificially-introduced mutations are colored green and naturally-occurring variants are colored\ red. For full information about a particular variant, click the "UniProt variant" linkout. \ The "UniProt record" linkout lists all variants of a particular protein sequence.\ The "Source articles" linkout lists the articles in PubMed that originally described\ the variant(s) and were used as evidence by the UniProt curators.\
\ \Methods
\ \\ UniProt sequences were aligned to RefSeq sequences first with BLAT, then lifted\ to genome positions with pslMap. UniProt variants were parsed from the UniProt\ XML file. The variants were then mapped to the genome through the alignment\ using the pslMap program. This mapping approach\ draws heavily on the LS-SNP pipeline by Mark Diekhans. The complete script is\ part of the kent source tree and is located in src/hg/utils/uniprotMutations. \
\ \Data Access
\ \\
The raw data can be explored interactively with the\
Table Browser, or the\
Data Integrator.\
For automated analysis, the genome annotation is stored in a bigBed file that\
can be downloaded from the\
download server.\
The underlying data file for this track is called spMut.bb. Individual \
regions or the whole genome annotation can be obtained using our tool bigBedToBed \
which can be compiled from the source code or downloaded as a precompiled binary\
for your system. Instructions for downloading source code and binaries can be found\
here. \
The tool can also be used to obtain only features within a given range, for example:\
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/uniprot/spMut.bb -chrom=chr6 -start=0 -end=1000000 stdout \
\
Please refer to our\
mailing list archives\
for questions, or our\
Data Access FAQ\
for more information. \
Credits
\ \\ This track was created by Maximilian Haeussler, with advice from Mark Diekhans and Brian Raney.\
\ \References
\ \\
UniProt Consortium.\
\
Reorganizing the protein space at the Universal Protein Resource (UniProt).\
Nucleic Acids Res. 2012 Jan;40(Database issue):D71-5.\
PMID: 22102590; PMC:
\ Yip YL, Scheib H, Diemand AV, Gattiker A, Famiglietti LM, Gasteiger E, Bairoch A.\ \ The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure\ information on human protein variants.\ Hum Mutat. 2004 May;23(5):464-70.\ PMID: 15108278\
\ phenDis 1 bigDataUrl /gbdb/hg38/uniprot/unipMut.bb\ exonNumbers off\ group phenDis\ itemRgb on\ longLabel UniProt/SwissProt Amino Acid Substitutions\ maxWindowCoverage 10000000\ mouseOverField comments\ noScoreFilter on\ shortLabel UniProt Variants\ track spMut\ type bigBed 12 +\ urls variationId="http://www.uniprot.org/uniprot/$$" uniProtId="http://www.uniprot.org/uniprot/$$" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"\ visibility hide\ unusualcons Unusually Conserved bed Unusually Conserved Regions - Ultracons, HARs, etc. 0 100 0 0 0 127 127 127 0 0 0Description
\These tracks show regions of unusual conservation in human relative to other organisms:
\ \- \
- Ultraconserved elements (UCE aka ultras):
\ Elements with 100% identity in human/mouse/rat alignments. Many of these were tested in mice,\ see the VISTA enhancers track in\ the Regulation track group. (Bejerano et al., Science 2004)\ - Human Accelerated Regions (HARs):
\ 2,649 regions conserved throughout vertebrate evolution but strikingly different in humans\ (Pollard et al., Nature 2006).\ This extended list was collected by the Katie Pollard lab from various publications\ (Capra et al., PTRSB 2013).\ - High-confidence Zoonomia Human Accelerated Regions (HARs):
\ 312 HARs from the Zoonomia Alignments (Keough et al. Science, 2023)\ - Human Ancestor Quickly Evolved Regions (HAQERs):
\ 1,580 HAQERs from (Mangan et al., Cell 2023)\ - Human-specific long deletions (hCondels) between human, macaque and chimpanzee:
\ 583 regions (one not lifted) present in macaque and chimp, but not in humans. Since these are\ sequences absent from the human genome, we show the 2bp around the deletion.\ (McLean et al., Nature 2011)\ - Short hCondels < 40bp in primates and up to 11 vertebrates:
\ 43,588 regions deleted in human but present in 11 vertebrates or primates. These regions were\ tested in an MPRA screen, the MPRA results are in the track and shown when clicking an element.\ Since the track is showing MPRA results and the position of deletions, what is shown in the\ track are regions ±100bp around the deletion site on the human genome, not just the two\ basepairs flanking the site of the deletion. (Xue et al., Science 2023)\ - Zoonomia Ultraconserved elements (zooUCEs):
\ 4,552 Ultraconserved elements identified from the 241-mammals genome alignment. All regions\ >=20bp where at least 235 species aligned and all aligning species are fixed for the same\ base at every position. 20-190 bp.\ - Zoonomia: Runs of contiguous constraint (RoCCs):
\ All genomic regions where contiguous bases have a phyloP score > 2.270 (5% FDR) and are\ therefore under high constraint. Regions separated by a single base with phyloP < 2.270 were\ merged. N = 595,535; 20-1,359 bp. \ - Zoonomia: Unannotated Intergenic Constrained Regions (UNICORNs):
\ Non-coding regions of the genome that lack annotation in ENCODE3 but show high evolutionary\ constraint, suggesting function. Positions with phyloP > 2.270 (5% FDR) within 5bp of each\ other are grouped into UNICORNs. N = 424,180; 11 - 1,325 bp.\ - UCNEBase: Elements conserved with chicken:
\ Non-coding elements > 200 bp long and 95% conserved between human and chicken.\ (Dimitrieva and Bucher, NAR 2013)\ - UCNEBase: Elements paralogous to others:
\ Alignable with E<10-4 to other chicken-conserved elements.\ - UCNEBase UGRBs: Ultra-conserved genomic regulatory blocks:
\ Chicken-conserved elements within 0.5 Mb in both human and chicken.\
| Track | \Count | \Coverage in bp | \
|---|---|---|
| Ultraconserved | \481 | \126,007 | \
| UCNEBase Chicken | \4351 | \1,415,142 | \
| UCNEBase Paralogs | \987 | \215,800 | \
| UCNEBase UGRBs | \239 | \199,269,634 | \
| Zoo Ultracons. | \4552 | \131,661 | \
| HARs | \2647 | \681,420 | \
| ZooHARs | \312 | \49,173 | \
| HAQERs | \1580 | \1,410,669 | \
| Long hCondels | \583 | \293,809 | \
| Short hCondels | \10,032 | \1,968,123 | \
| Zoo ROCCs | \595,536 | \26,995,284 | \
| Zoo UNICORNs | \423,586 | \16,155,520 | \
Display Conventions and Configuration
\All tracks show the locations and name for the features. Only one, Short hCondels, has MPRA test results in the track itself.\
\ \Methods
\ \Ultraconserved sequences: downloaded from our hg19 public track hub and lifted to hg38.\
\ \\ HARs: Downloaded from https://docpollard.org/research/.\ Converted from Excel. Lifted 2649 HAR file to hg38.\
\ \\ HAQERs: Converted from supplemental table 1 of Mangan et al, Cell 2023.\
\ \\ Long hCondels from McLean: Excel file converted manually as supplement 2 from\ https://pmc.ncbi.nlm.nih.gov/articles/PMC3071156/ and lifted to hg38 from hg18.\
\ \\ Short hCondels from Xue et al: Excel file converted manually from supplemental file 1.\ From the paper: "We constructed a chimpanzee-anchored multiple sequence alignment across 11\ vertebrate species to detect statistically significant conserved sequences (1,371,766). These\ elements ranged from being deeply conserved throughout vertebrates to being conserved only through\ primates. We then intersected our conserved elements with called deletions (2,042,706) between the\ human (hg38) and chimpanzee (panTro4) genomes to yield 43,588 putative hCONDELs."\
\ \ \\ Zoonomia UNICORNs, ZooUCEs and RoCCs: Downloaded from\ https://cgl.gi.ucsc.edu/data/cactus/zoonomia-2021-track-hub/hg38/\
\ \
Credits
\\ Thanks to Katie Pollard, Hiram Clawson, James Xue, Matt Christmas\ (matthew.christmas@imbim.uu.se),\ and Mark Diekhans for providing the data.
\ \References
\ \\ Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D.\ \ Ultraconserved elements in the human genome.\ Science. 2004 May 28;304(5675):1321-5.\ PMID: 15131266\
\ \ \\ Pollard KS, Salama SR, Lambert N, Lambot MA, Coppens S, Pedersen JS, Katzman S, King B, Onodera C,\ Siepel A et al.\ \ An RNA gene expressed during cortical development evolved rapidly in humans.\ Nature. 2006 Sep 14;443(7108):167-72.\ PMID: 16915236\
\ \ Capra JA, Erwin GD, McKinsey G, Rubenstein JL, Pollard KS.\ \ Many human accelerated regions are developmental enhancers.\ Philos Trans R Soc Lond B Biol Sci. 2013 Dec 19;368(1632):20130025.\ PMID: 24218637; PMC:\
Keough KC, Whalen S, Inoue F, Przytycki PF, Fair T, Deng C, Steyert M, Ryu H, Lindblad-Toh K,\
Karlsson E et al.\
\
Three-dimensional genome rewiring in loci with human accelerated regions.\
Science. 2023 Apr 28;380(6643):eabm1696.\
PMID: 37104607; PMC:
\
Mangan RJ, Alsina FC, Mosti F, Sotelo-Fonseca JE, Snellings DA, Au EH, Carvalho J, Sathyan L,\
Johnson GD, Reddy TE et al.\
\
Adaptive sequence divergence forged new neurodevelopmental enhancers in humans.\
Cell. 2022 Nov 23;185(24):4587-4603.e23.\
PMID: 36423581; PMC:
\
McLean CY, Reno PL, Pollen AA, Bassan AI, Capellini TD, Guenther C, Indjeian VB, Lim X, Menke DB,\
Schaar BT et al.\
\
Human-specific loss of regulatory DNA and the evolution of human-specific traits.\
Nature. 2011 Mar 10;471(7337):216-9.\
PMID: 21390129; PMC:
\
Xue JR, Mackay-Smith A, Mouri K, Garcia MF, Dong MX, Akers JF, Noble M, Li X, Zoonomia Consortium,\
Lindblad-Toh K et al.\
\
The functional and evolutionary impacts of human-specific deletions in conserved elements.\
Science. 2023 Apr 28;380(6643):eabn2253.\
PMID: 37104592; PMC:
\
Dimitrieva S, Bucher P.\
\
UCNEbase--a database of ultraconserved non-coding elements and genomic regulatory blocks.\
Nucleic Acids Res. 2013 Jan;41(Database issue):D101-9.\
PMID: 23193254; PMC:
Description
\ \\ This track shows 44k upstream open reading frames (uORFs) in 5' UTRs of human genes,\ curated from ribosome profiling data by the\ UTRannotator\ project, annotated by UCSC with the Kozak strength and translational efficiency.\
\ \\ uORFs are small open reading frames located in the 5' UTR of mRNAs, upstream of the main\ protein-coding sequence. They play an important role in translational regulation: ribosomes\ scanning from the 5' cap may translate a uORF first, which can reduce translation of the\ downstream main ORF. Genetic variants that create or disrupt uORFs can therefore alter\ protein expression and contribute to disease.\
\ \\ UTRannotator is a plugin for the\ Ensembl\ Variant Effect Predictor (VEP) that annotates 5' UTR variants with respect to uORFs.\ It detects five types of uORF-perturbing events (AUG gained/lost, stop lost/gained, frameshift).\ This plugin needs a database of uORFs to annotate, so the authors compiled a\ curated reference set of translated small ORFs in human 5' UTRs, derived from\ ribosome profiling data in the\ sorfs.org database. This reference set\ is what is displayed in this track. Almost all of these ORFs are annotated as 5' uORFs, only \ a tiny fraction, 270 of them, are annotated as 5'UTR+3'UTR uORF, when transcripts overlap.\
\ \Display Conventions and Configuration
\ \\ Items are displayed in bigGenePred format. Each item is labeled with the gene symbol of\ the host transcript. Color reflects the categorical Kozak consensus strength:\
\\
Strong – A/G at position −3 and G at position +4
\
Moderate – only one of those positions matches
\
Weak – neither position matches
\
non-ATG – near-cognate start codon; the Kozak rule does not apply
\
no context – chromosome edge or context unavailable\
\ The UTRannotator source data has no exon/intron structure, so each uORF is projected\ onto a same-strand host transcript whose coordinates overlap the uORF range. The host's\ exons are clipped to the uORF range, so any host intron inside the overlap becomes an\ intron of the displayed feature; a uORF that extends past either end of the host gets a\ single bridging block for the orphan portion. The primary donor pool is the\ MANE Select / MANE Plus Clinical set;\ if every MANE candidate is rejected (e.g. the original UTRannotator transcript had a\ different UTR exon boundary), the full GENCODE comprehensive set is consulted as a\ fallback. The chosen donor transcript ID is stored in intronsSource\ (none if no host was found in either pool).\
\ \\ Mouseover shows the gene symbol, uORF type, start codon, Kozak strength and\ translational efficiency, and the host transcript whose exons supplied the intron\ structure.\
\ \\ The track offers the following filters: start codon, Kozak strength, Kozak TE (range),\ uORF type (5'UTR-only vs spans into 3'UTR).\
\ \Data Access
\ \\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. The data can be accessed from\ scripts through our API; the track name is\ "utrAnnotUorfs".\
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ Individual regions or the whole genome annotation can be obtained using our tool\ bigBedToBed, which can be compiled from the source code or downloaded as a precompiled\ binary for your system. Instructions for downloading source code and binaries can be found\ here.\ The tool can also be used to obtain only features within a given range, e.g.\
\ bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/ncOrfs/utrAnnotUorfs.kozak.bb -chrom=chr21 -start=0 -end=100000000 stdout\ \Methods
\ \\ The uORF reference data was downloaded from the\ UTRannotator\ GitHub repository (file uORF_5UTR_GRCh38_PUBLIC.txt) and converted to bigBed format\ at UCSC. Coordinates for reverse-strand uORFs were swapped to genomic orientation. Four entries\ with invalid coordinates were excluded. Host transcripts were annotated as described above. \
\ \Credits
\ \\ Thanks to Xiaolei Zhang, Nicola Whiffin, and the UTRannotator team at the Imperial College London\ Cardiovascular Genetics group for making this data publicly available.\
\ \References
\ \\
Whiffin N, Karczewski KJ, Zhang X, Chothani S, Smith MJ, Evans DG, Roberts AM, Quaife NM, Schafer S,\
Rackham O et al.\
\
Characterising the loss-of-function impact of 5' untranslated region variants in 15,708\
individuals.\
Nat Commun. 2020 May 27;11(1):2523.\
PMID: 32461616; PMC:
\
Zhang X, Wakeling M, Ware J, Whiffin N.\
\
Annotating high-impact 5'untranslated region variants with the UTRannotator.\
Bioinformatics. 2021 May 23;37(8):1171-1173.\
PMID: 32926138; PMC:
Start codon: $startCodon
Kozak: $kozakStrength (TE $kozakTE)
Host transcript: $intronsSource\ parent ncOrfs\ shortLabel UTRannotator uORFs\ track utrAnnotUorfs\ type bigGenePred\ visibility pack\ gnomADPextVagina Vagina bigWig 0 1 gnomAD pext Vagina 0 100 255 85 153 255 170 204 0 0 0 varRep 0 bigDataUrl /gbdb/hg38/gnomAD/pext/Vagina.bw\ color 255,85,153\ longLabel gnomAD pext Vagina\ parent gnomadPext off\ shortLabel Vagina\ track gnomADPextVagina\ visibility hide\ varaico Varaico Variants bigBed 9 + Varaico Variants extracted from full text publications, titles, and abstracts 1 100 0 0 0 127 127 127 0 0 0
Description
\\
\
\
NOTE:
\
Some rights reserved. This work permits non-commercial use, distribution and reproduction in any\
medium, provided the original author and source are credited.\
\
License and legal information can be found on the Varaico website.
\ Varaico\ (Variation Research Advancing Insight in Complex\ Organisms) was created using\ literature mining, similar to AVADA. Varaico variants are generated by an automated process that\ extracts purely factual information about genes from scientific papers (by matching strings against\ gene names) and HGVS variant descriptions (using regular expressions). Varaico aims to reduce\ false-positive gene and variant mentions and link them together appropriately, but nonetheless, many\ variants displayed are not mapped to the genomic position intended by the authors.\
\ \Varaico Variants (suppl) contains variants extracted from supplementary data files\ using similar methods as in the Varaico track.
\ \\ For data questions, Varaico can be contacted at\ \ jbirgmei@gmail.com\ \
\ \Display Conventions and Configuration
\ \\ Genomic locations of variants are labeled with the HGNC gene symbol and the variant change.\ Mouse over the variants to show the gene, variant, latest author/year/title, number of publications\ mentioning the variant, and variant effect.
\ \\ Clicking on an item will provide a link directly to\ Varaico to view all publications mentioning this variant.
\ \\ The items are colored based on the amount of literature support and are a gradient from the\ colors described on the table below:\
\ \\
| Color | \Level of literature support | \
|---|---|
| \ | ≥20 papers mention the variant | \
| \ | 15 papers mention the variant | \
| \ | 10 papers mention the variant | \
| \ | 5 papers mention the variant | \
| \ | 1 paper mentions the variant | \
Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be accessed from scripts through our\ API, the track name is "varaico".
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called varaico.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed,\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system.
\\ The previous Varaico Variants version is also available in our\ download archive.
\\
Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g.\
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/varaico.bb -chrom=chr21 -start=0 -end=10000000 stdout
Number of publications: $articlesCount
Variant Effect: $variantEffect\ noScoreFilter on\ parent varsInPubs pack\ pennantIcon Updated red ../goldenPath/newsarch.html#062526 "Updated Jun. 25, 2026"\ shortLabel Varaico Variants\ track varaico\ type bigBed 9 +\ urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility dense\ varaicoSuppl Varaico Variants (suppl) bigBed 9 + Varaico Variants extracted from Supplementary Data 1 100 0 0 0 127 127 127 0 0 0
Description
\\
\
\
NOTE:
\
Some rights reserved. This work permits non-commercial use, distribution and reproduction in any\
medium, provided the original author and source are credited.\
\
License and legal information can be found on the Varaico website.
\ Varaico\ (Variation Research Advancing Insight in Complex\ Organisms) was created using\ literature mining, similar to AVADA. Varaico variants are generated by an automated process that\ extracts purely factual information about genes from scientific papers (by matching strings against\ gene names) and HGVS variant descriptions (using regular expressions). Varaico aims to reduce\ false-positive gene and variant mentions and link them together appropriately, but nonetheless, many\ variants displayed are not mapped to the genomic position intended by the authors.\
\ \Varaico Variants (suppl) contains variants extracted from supplementary data files\ using similar methods as in the Varaico track.
\ \\ For data questions, Varaico can be contacted at\ \ jbirgmei@gmail.com\ \
\ \Display Conventions and Configuration
\ \\ Genomic locations of variants are labeled with the HGNC gene symbol and the variant change.\ Mouse over the variants to show the gene, variant, latest author/year/title, number of publications\ mentioning the variant, and variant effect.
\ \\ Clicking on an item will provide a link directly to\ Varaico to view all publications mentioning this variant.
\ \\ The items are colored based on the amount of literature support and are a gradient from the\ colors described on the table below:\
\ \\
| Color | \Level of literature support | \
|---|---|
| \ | ≥20 papers mention the variant | \
| \ | 15 papers mention the variant | \
| \ | 10 papers mention the variant | \
| \ | 5 papers mention the variant | \
| \ | 1 paper mentions the variant | \
Data access
\\ The raw data can be explored interactively with the Table Browser\ or the Data Integrator. The data can be accessed from scripts through our\ API, the track name is "varaico".
\ \\ For automated download and analysis, the genome annotation is stored in a bigBed file that\ can be downloaded from\ our download server.\ The file for this track is called varaico.bb. Individual\ regions or the whole genome annotation can be obtained using our tool bigBedToBed,\ which can be compiled from the source code or downloaded as a precompiled\ binary for your system.
\\ The previous Varaico Variants version is also available in our\ download archive.
\\
Instructions for downloading source code and binaries can be found\
here.\
The tool\
can also be used to obtain only features within a given range, e.g.\
\
bigBedToBed http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/varaico.bb -chrom=chr21 -start=0 -end=10000000 stdout
Number of publications: $articlesCount
Variant Effect: $variantEffect\ noScoreFilter on\ parent varsInPubs pack\ pennantIcon Updated red ../goldenPath/newsarch.html#062526 "Updated Jun. 25, 2026"\ shortLabel Varaico Variants (suppl)\ track varaicoSuppl\ type bigBed 9 +\ urls outlink="$$" selectedPmid="https://www.ncbi.nlm.nih.gov/pubmed/$$" rgene="https://www.ncbi.nlm.nih.gov/nuccore/$$"\ visibility dense\ varsInPubs Variants in Papers bed 3 Genetic Variants mentioned in scientific publications 0 100 0 0 0 127 127 127 0 0 0
Description
\The tracks that are listed here contain genetic variants and links to scientific publications that \ mention them.
\- \
- The Mastermind track, created by Genomenon, has been retired at the\ request of the data provider and is no longer updated or displayed. \
- The VarChat \ track was created by enGenome and links to its proprietary \ software, VarChat, with an unknown false positive rate. \
- The AVADA track was created in the Bejerano lab at\ Stanford by J. Birgmeier also on fulltext papers, using sophisticated machine learning\ methods and was evaluated to have a false positive rate of around 50% in their study. \
- The PubTator rsIDs track was created using \ PubTator 3 data. \
- The Varaico tracks were created using literature mining in a fashion similar to AVADA. Coloring\ is a gradient between blue and red, and represent the number of publications per variant. See\ the Varaico website for more details. \
\ For additional information please click on the hyperlink of the respective track above.\
Display conventions
\\ By default, each variant is labeled with the nucleotide change. Hover over the\ feature to see more information, explained on the track details page of the particular track\ or when clicking onto the feature.
\Credits
\\ For data provenance, access and descriptions, please click the documentation via the link above.\
\ phenDis 1 group phenDis\ longLabel Genetic Variants mentioned in scientific publications\ pennantIcon Updated red ../goldenPath/newsarch.html#062526 "Updated Varaico Variants and Varaico Variants (suppl) tracks to release 3 Jun. 25, 2026"\ shortLabel Variants in Papers\ superTrack on\ track varsInPubs\ type bed 3\ vistaEnhancersBb VISTA Enhancers bigBed 9 + VISTA Enhancers 0 100 0 0 0 127 127 127 0 0 0 https://enhancer.lbl.gov/vista/element?vistaId=$$Description
\ \This track shows potential enhancers whose activity was experimentally validated in transgenic\ mice. Most of these noncoding elements were selected for testing based on their extreme conservation\ in other vertebrates or epigenomic evidence (ChIP-Seq) of putative enhancer marks. More information\ can be found on the VISTA Enhancer Browser\ page.\
\ \Display Conventions and Configuration
\Items appearing in blue (positive) indicate that a\ reproducible pattern was observed in the in vivo enhancer assay under at least one of the\ tested conditions. Items appearing in gray (negative) indicate\ that NO reproducible pattern was observed in the in vivo enhancer assay under any of the tested\ conditions. This does not exclude the possibility that this region is a reproducible enhancer active\ under different conditions, for example at an earlier or later timepoint in development.
\ \Methods
\Excerpted from the Vista Enhancer Mouse Enhancer Screen Handbook and Methods page at the Lawrence Berkeley\ National Laboratory (LBNL) website:\
Enhancer Candidate Identification
\Most enhancer candidate sequences are identified by extreme evolutionary sequence conservation or\ by ChIP-seq. Detailed information related to enhancer identification by extreme evolutionary\ conservation can be found in the following publications:\
\- \
- Pennacchio et al., Genomic strategies to identify mammalian regulatory sequences. Nature Rev Genet 2001 \
- Nobrega et al., Nobrega et al., Scanning human gene deserts for long-range enhancers. Science 2003 \
- Pennacchio et al., In vivo enhancer analysis of human conserved non-coding sequences. Nature 2006 \
- Visel et al., Enhancer identification through comparative genomics. Semin Cell Dev Biol. 2007 \
- Visel et al., Ultraconservation identifies a small subset of extremely constrained developmental enhancers.\ Nature Genet 2008 \
Detailed information related to enhancer identification by ChIP-seq can be found in the\ following publications:
\- \
- Visel et al., ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 2009 \
- Visel et al., Genomic views of distant-acting enhancers. Nature 2009 \
See the Transgenic Mouse Assay section for experimental procedures that were used to perform the\ transgenic assays: Mouse Enhancer Screen Handbook and Methods\ \
UCSC converted the\ vista-data bed files for\ hg38 and mm10 into bigBed format using the bedToBigBed utility. The data for mm39 was lifted over\ from mm10. The data for hg19 was lifted over from hg38.
\ \Data Access
\\ VISTA Enhancers data can be explored interactively with the\ Table Browser and cross-referenced with the\ Data Integrator. For programmatic access, the track can be\ accessed using the Genome Browser's REST API. ReMap\ annotations can be downloaded from the Genome Browser's\ download server\ as a bigBed file. This compressed binary format can be remotely queried through\ command line utilities. Please note that some of the download files can be quite large.
\ \Credits
\Thanks to the Lawrence Berkeley National Laboratory for providing this data.
\ \ \References
\\
Kosicki M, Baltoumas FA, Kelman G, Boverhof J, Ong Y, Cook LE, Dickel DE, Pavlopoulos GA, Pennacchio\
LA, Visel A.\
\
VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers.\
Nucleic Acids Res. 2025 Jan 6;53(D1):D324-D330.\
PMID: 39470740; PMC:
\
Visel A, Minovitsky S, Dubchak I, Pennacchio LA.\
\
VISTA Enhancer Browser--a database of tissue-specific human enhancers.\
Nucleic Acids Res. 2007 Jan;35(Database issue):D88-92.\
PMID: 17130149; PMC:
Description
\\ The WebSTR track displays 1,710,833 short tandem repeat (STR) loci across the\ human genome from the\ WebSTR database.
\ \\ This track is based on the EnsembleTR panel for the GRCh38/hg38 assembly,\ which represents a combined set of tandem repeats genotyped by four separate methods\ (HipSTR, GangSTR, ExpansionHunter, and AdVNTR) on data from the\ 1000 Genomes Project.\ EnsembleTR\ was applied to jointly genotype all 3,550 samples, producing consensus calls at\ over 1.7 million autosomal tandem repeat loci.
\ \\ The track includes allele frequency distributions for five 1000 Genomes continental\ populations:
\- \
- AFR – African (893 samples) \
- AMR – Admixed American (490 samples) \
- EAS – East Asian (585 samples) \
- EUR – European (633 samples) \
- SAS – South Asian (601 samples) \
\ For each population, allele frequencies are defined as the number of copies of each allele\ divided by the total number of alleles in that population. Alleles are represented as\ the number of repeat unit copies.
\ \Display Conventions
\\ Items are colored by expected heterozygosity, computed as\ het = 1 − ∑pi2 from allele frequencies\ pooled across all five 1000 Genomes populations weighted by sample count:
\- \
- Light gray – monomorphic (het = 0, single allele observed) \
- Dark blue – nearly monomorphic (0 < het < 0.1) \
- Medium blue – low diversity (het 0.1–0.3) \
- Light purple – moderate diversity (het 0.3–0.5) \
- Salmon – high diversity (het 0.5–0.7) \
- Dark red – very high diversity (het ≥ 0.7) \
- Medium gray – no allele frequency data available \
\ Each item is labeled by its repeat motif and copy count. Hovering over an item shows the repeat\ motif, number of reference copies, and heterozygosity. Clicking an item links to the\ corresponding\ WebSTR locus page, which provides\ interactive allele frequency histograms and additional annotations.
\ \Methods
\\ The EnsembleTR reference panel was constructed as follows:
\- \
- Tandem repeat reference sets from four genotyping tools (HipSTR, GangSTR,\ ExpansionHunter, and AdVNTR) were merged. \
- Each tool was run independently on 1000 Genomes sequencing data. \
- EnsembleTR\ was used to produce joint consensus genotype calls across all four methods. \
- Loci called in fewer than 75% of samples were removed, yielding 1,710,833 loci. \
- Allele frequencies were computed per population. \
\ For the UCSC Genome Browser track, the source data were converted from CSV to bigBed\ format. Per-population allele frequency distributions are stored as extra bigBed fields.
\ \Data Access
\\ The raw data can be explored interactively with the\ Table Browser or the\ Data Integrator. For automated\ analysis, the data may be queried from our\ REST API. The underlying bigBed\ file can be downloaded from our\ download\ server.
\ \\ The complete WebSTR dataset, including additional cohorts and data types not included in\ this track, is available from the\ WebSTR web portal. Programmatic\ access to the full WebSTR database is available through the\ WebSTR REST API.
\ \Credits
\\ Thanks to Melissa Gymrek (UC San Diego) and the WebSTR team for\ providing the data for this track.
\ \References
\\ Lundström OS, Adriaan Verbiest M, Xia F, Jam HZ, Zlobec I,\ Anisimova M, Gymrek M.\ \ WebSTR: A Population-wide Database of Short Tandem Repeat Variation\ in Humans.\ J Mol Biol. 2023 Oct 15;435(20):168260.\ PMID: 37678708\
\ \\
Ziaei Jam H, Li Y, DeVito R, Mousavi N, Ma N, Lujumba I, Adam Y,\
Maksimov M, Huang B, Dolzhenko E et al.\
\
A deep population reference panel of tandem repeat variation.\
Nat Commun. 2023 Oct 23;14(1):6711.\
PMID: 37872149; PMC:
Copies in ref: $numCopies
Heterozygosity: $het\ scoreFilter 0\ searchIndex name\ shortLabel WebSTR\ superTrack strVar dense\ track webstr\ type bigBed 9 +\ url https://webstr.ucsd.edu/locus?repeat_id=$
Description
\\ This track shows a multiple alignment of 447 mammalian genomes made with Cactus and constraint scores derived from it.\ To build this track, the Zoonomia 241 alignment was used as a starting point, all primates and a few outdated\ assemblies were removed and an alignment between 233 newly sequenced primates was added. See the Methods section below for details, and \ also the publications by Kuderna et al. 2023 in the Reference section.\ All alignments and operations on them were performed using the Cactus toolkit.\
\ \\ This track shows four phyloP conservation score subtracks computed from the\ 447-way Cactus alignment (and a primates subset of it):\
- \
- 447 phyloP REV: all 447 species, REV substitution model.\
- 447 phyloP SSREV: all 447 species, strand-symmetric reversible\ (SSREV) substitution model.\
- 447 phyloP primates: 233 primates subset, SSREV substitution\ model.\
- 447 phyloP primates LRT: 233 primates subset, likelihood-ratio\ test scoring.\
\ The SSREV substitution model is strand-symmetric, which avoids\ strand-dependent bias in single-base conservation scores (Pollard\ et al. 2010, supplementary section 2.4) -- relevant when analyzing\ transcript-related nucleotides such as splice sites, miRNA seed regions, or\ other strand-specific sequence features. The REV model is the standard\ phyloP model and is appropriate for general genome-wide conservation\ analysis. The primates subset tracks restrict scoring to the 233 primate\ genomes included in the alignment, useful when conservation across\ non-primate mammals would dilute primate-specific signal.\
\ \Data Access
\\ Downloads for data in this track are available from the directory:\
- \
- \ Cactus 447-way alignments (MAF format), and phylogenetic trees\
- \ PhyloP conservation (WIG format)\
Display Conventions and Configuration
\\ In full and pack display modes, conservation scores are displayed as a\ wiggle track (histogram) in which the height reflects the\ size of the score.\ The conservation wiggles can be configured in a variety of ways to\ highlight different aspects of the displayed information.\ Click the Graph configuration help link for an explanation\ of the configuration options.
\\ Pairwise alignments of each species to the human genome are\ displayed below the conservation histogram as a grayscale density plot (in\ pack mode) or as a wiggle (in full mode) that indicates alignment quality.\ In dense display mode, conservation is shown in grayscale using\ darker values to indicate higher levels of overall conservation\ as scored by phastCons.
\\ Checkboxes on the track configuration page allow selection of the\ species to include in the pairwise display.\ Note that excluding species from the pairwise display does not alter the\ conservation score display.
\\ To view detailed information about the alignments at a specific\ position, zoom the display in to 30,000 or fewer bases, then click on\ the alignment.
\ \Gap Annotation
\\ The Display chains between alignments configuration option\ enables display of gaps between alignment blocks in the pairwise alignments in\ a manner similar to the Chain track display. Missing sequence in any\ assembly is highlighted in the track display by regions of yellow when zoomed\ out and by Ns when displayed at base level. The following conventions are used:\
- \
- Single line: No bases in the aligned species. Possibly due to a\ lineage-specific insertion between the aligned blocks in the human genome\ or a lineage-specific deletion between the aligned blocks in the aligning\ species.\
- Double line: Aligning species has one or more unalignable bases in\ the gap region. Possibly due to excessive evolutionary distance between\ species or independent indels in the region between the aligned blocks in both\ species.\
- Pale yellow coloring: Aligning species has Ns in the gap region.\ Reflects uncertainty in the relationship between the DNA of both species, due\ to lack of sequence in relevant portions of the aligning species.\
Genomic Breaks
\\ Discontinuities in the genomic context (chromosome, scaffold or region) of the\ aligned DNA in the aligning species are shown as follows:\
- \
- \ Vertical blue bar: Represents a discontinuity that persists indefinitely\ on either side, e.g. a large region of DNA on either side of the bar\ comes from a different chromosome in the aligned species due to a large scale\ rearrangement.\
- \ Green square brackets: Enclose shorter alignments consisting of DNA from\ one genomic context in the aligned species nested inside a larger chain of\ alignments from a different genomic context. The alignment within the\ brackets may represent a short misalignment, a lineage-specific insertion of a\ transposon in the human genome that aligns to a paralogous copy somewhere\ else in the aligned species, or other similar occurrence.\
Base Level
\\ When zoomed-in to the base-level display, the track shows the base\ composition of each alignment. The numbers and symbols on the Gaps\ line indicate the lengths of gaps in the human sequence at those\ alignment positions relative to the longest non-human sequence.\ If there is sufficient space in the display, the size of the gap is shown.\ If the space is insufficient and the gap size is a multiple of 3, a\ "*" is displayed; other gap sizes are indicated by "+".
\\ Codon translation is available in base-level display mode if the\ displayed region is identified as a coding segment. To display this annotation,\ select the species for translation from the pull-down menu in the Codon\ Translation configuration section at the top of the page. Then, select one of\ the following modes:\
- \
- \ No codon translation: The gene annotation is not used; the bases are\ displayed without translation.\
- \ Use default species reading frames for translation: The annotations from\ the genome displayed in the Default species to establish reading frame\ pull-down menu are used to translate all the aligned species present in the\ alignment.\
- \ Use reading frames for species if available, otherwise no translation:\ Codon translation is performed only for those species where the region is\ annotated as protein coding.\
- Use reading frames for species if available, otherwise use default species:\ Codon translation is done on those species that are annotated as being protein\ coding over the aligned region using species-specific annotation; the remaining\ species are translated using the default species annotation.\
\ Codon translation uses the following gene tracks as the basis for translation:\
\ \\
\ Table 2. Gene tracks used for codon translation.\\ Gene Track Species \ RefSeq Genes Bos mutus, Canis lupus familiaris, Carlito syrichta, Cercocebus atys, Chinchilla lanigera, Colobus angolensis, Condylura cristata, Dipodomys ordii, Elephantulus edwardii, Eptesicus fuscus, Felis catus, Felis catus fca126, Fukomys damarensis, Homo sapiens, Ictidomys tridecemlineatus, Macaca mulatta, Macaca nemestrina, Marmota marmota, Microtus ochrogaster, Miniopterus natalensis, Mus musculus, Mus pahari, Myotis brandtii, Myotis davidii, Myotis lucifugus, Odobenus rosmarus, Orcinus orca, Otolemur garnettii, Peromyscus maniculatus, Piliocolobus tephrosceles, Propithecus coquerelli, Pteropus alecto, Pteropus vampyrus, Rattus norvegicus, Rhinopithecus roxellana, Saimiri boliviensis, Sorex araneus, Sus scrofa, Theropithecus gelada, Tupaia chinensis \ Ensembl Genes Cavia aperea \ Augustus Genes Eidolon helvum, Pteronotus parnellii \ no annotation Acinonyx jubatus, Acomys cahirinus, Ailuropoda melanoleuca, Ailurus fulgens, Allactaga bullata, Allenopithecus nigroviridis, Allochrocebus lhoesti, Allochrocebus preussi, Allochrocebus solatus, Alouatta belzebul, Alouatta caraya, Alouatta discolor, Alouatta juara, Alouatta macconnelli, Alouatta nigerrima, Alouatta palliata, Alouatta puruensis, Alouatta seniculus, Ammotragus lervia, Anoura caudifer, Antilocapra americana, Aotus azarae, Aotus griseimembra, Aotus nancymaae, Aotus trivirgatus, Aotus vociferans, Aplodontia rufa, Arctocebus calabarensis, Artibeus jamaicensis, Ateles geoffroyi_a, Ateles geoffroyi_b, Ateles belzebuth, Ateles chamek, Ateles marginatus, Ateles paniscus, Avahi laniger, Avahi peyrierasi, Balaenoptera acutorostrata, Balaenoptera bonaerensis, Beatragus hunteri, Bison bison, Bos indicus, Bos taurus, Bubalus bubalis, Cacajao ayresi, Cacajao calvus, Cacajao hosomi, Cacajao melanocephalus, Callibella humilis, Callimico goeldii, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Camelus bactrianus, Camelus dromedarius, Camelus ferus, Canis lupus VD, Canis lupus dingo, Canis lupus orion, Capra aegagrus, Capra hircus, Capromys pilorides, Carollia perspicillata, Castor canadensis, Catagonus wagneri, Cavia porcellus, Cavia tschudii, Cebuella niveiventris, Cebuella pygmaea, Cebus albifrons, Cebus olivaceus, Cebus unicolor, Cephalopachus bancanus, Ceratotherium simum, Ceratotherium simum cottoni, Cercocebus chrysogaster, Cercocebus lunulatus, Cercocebus torquatus, Cercopithecus ascanius, Cercopithecus cephus, Cercopithecus diana, Cercopithecus hamlyni, Cercopithecus lowei, Cercopithecus albogularis, Cercopithecus mona, Cercopithecus neglectus, Cercopithecus nictitans, Cercopithecus petaurista, Cercopithecus pogonias, Cercopithecus roloway, Chaetophractus vellerosus, Cheirogaleus major, Cheirogaleus medius, Cheracebus lucifer, Cheracebus lugens, Cheracebus regulus, Cheracebus torquatus, Chiropotes albinasus, Chiropotes israelita, Chiropotes sagulatus, Chlorocebus aethiops, Chlorocebus pygerythrus, Chlorocebus sabaeus, Choloepus didactylus, Choloepus hoffmanni, Chrysochloris asiatica, Colobus guereza, Colobus polykomos, Craseonycteris thonglongyai, Cricetomys gambianus, Cricetulus griseus, Crocidura indochinensis, Cryptoprocta ferox, Ctenodactylus gundi, Ctenomys sociabilis, Cuniculus paca, Dasyprocta punctata, Dasypus novemcinctus, Daubentonia madagascariensis, Delphinapterus leucas, Desmodus rotundus, Dicerorhinus sumatrensis, Diceros bicornis, Dinomys branickii, Dipodomys stephensi, Dolichotis patagonum, Echinops telfairi, Elaphurus davidianus, Ellobius lutescens, Ellobius talpinus, Enhydra lutris, Equus asinus, Equus caballus, Equus przewalskii, Erinaceus europaeus, Erythrocebus patas, Eschrichtius robustus, Eubalaena japonica, Eulemur albifrons, Eulemur collaris, Eulemur coronatus, Eulemur flavifrons, Eulemur fulvus, Eulemur macaco, Eulemur mongoz, Eulemur rubriventer, Eulemur rufus, Eulemur sanfordi, Felis nigripes, Galago moholi, Galago senegalensis, Galagoides demidoff, Galeopterus variegatus, Giraffa tippelskirchi, Glis glis, Gorilla beringei, Gorilla gorilla, Graphiurus murinus, Hapalemur alaotrensis, Hapalemur gilberti, Hapalemur griseus, Hapalemur meridionalis, Hapalemur occidentalis, Helogale parvula, Hemitragus hylocrius, Heterocephalus glaber, Heterohyrax brucei, Hippopotamus amphibius, Hipposideros armiger, Hipposideros galeritus, Hoolock leuconedys, Hyaena hyaena, Hydrochoerus hydrochaeris, Hylobates abbotti, Hylobates agilis, Hylobates klossii, Hylobates pileatus, Hylobates muelleri, Hylobates pileatus, Hystrix cristata, Indri indri, Inia geoffrensis, Jaculus jaculus, Kogia breviceps, Lagothrix lagothricha, Lasiurus borealis, Lemur catta, Leontocebus fuscicollis, Leontocebus illigeri, Leontocebus nigricollis, Leontopithecus chrysomelas, Leontopithecus rosalia, Lepilemur ankaranensis, Lepilemur dorsalis, Lepilemur ruficaudatus, Lepilemur septentrionalis, Leptonychotes weddellii, Lepus americanus, Lipotes vexillifer, Lophocebus aterrimus, Loris lydekkerianus, Loris tardigradus, Loxodonta africana, Lycaon pictus, Macaca arctoides, Macaca assamensis, Macaca cyclopis, Macaca fascicularis, Macaca fuscata, Macaca leonina, Macaca maura, Macaca nigra, Macaca radiata, Macaca siberu, Macaca silenus, Macaca thibetana, Macaca tonkeana, Macroglossus sobrinus, Mandrillus leucophaeus, Mandrillus sphinx, Manis javanica, Manis pentadactyla, Megaderma lyra, Mellivora capensis, Meriones unguiculatus, Mesocricetus auratus, Mesoplodon bidens, Mico argentatus, Mico humeralifer, Mico schneideri, Microcebus murinus, Microgale talazaci, Micronycteris hirsuta, Miniopterus schreibersii, Miopithecus ogouensis, Mirounga angustirostris, Mirza zaza, Monodon monoceros, Mormoops blainvillei, Moschus moschiferus, Mungos mungo, Murina feae, Mus caroli, Mus spretus, Muscardinus avellanarius, Mustela putorius, Myocastor coypus, Myotis myotis, Myrmecophaga tridactyla, Nannospalax galili, Nasalis larvatus, Neomonachus schauinslandi, Neophocaena asiaeorientalis, Noctilio leporinus, Nomascus annamensis, Nomascus concolor, Nomascus gabriellae, Nomascus siki_a, Nomascus siki_b, Nyctereutes procyonoides, Nycticebus bengalensis, Nycticebus coucang, Nycticebus pygmaeus, Ochotona princeps, Octodon degus, Odocoileus virginianus, Okapia johnstoni, Ondatra zibethicus, Onychomys torridus, Orycteropus afer, Oryctolagus cuniculus, Otocyon megalotis, Otolemur crassicaudatus, Ovis aries, Ovis canadensis, Pan paniscus, Pan troglodytes, Panthera onca, Panthera pardus, Panthera tigris, Pantholops hodgsonii, Papio anubis, Papio cynocephalus, Papio hamadryas, Papio kindae, Papio papio, Papio ursinus, Paradoxurus hermaphroditus, Perodicticus ibeanus, Perodicticus potto, Perognathus longimembris, Petromus typicus, Phocoena phocoena, Piliocolobus badius, Piliocolobus gordonorum, Piliocolobus kirkii, Pipistrellus pipistrellus, Pithecia albicans, Pithecia chrysocephala, Pithecia hirsuta, Pithecia mittermeieri, Pithecia pissinattii, Pithecia pithecia, Pithecia vanzolinii, Platanista gangetica, Plecturocebus bernhardi, Plecturocebus brunneus, Plecturocebus caligatus, Plecturocebus cinerascens, Plecturocebus cupreus, Plecturocebus dubius, Plecturocebus grovesi, Plecturocebus hoffmannsi, Plecturocebus miltoni, Plecturocebus moloch, Pongo abelii, Pongo pygmaeus, Presbytis comata, Presbytis mitrata, Procavia capensis, Prolemur simus, Propithecus coronatus, Propithecus diadema, Propithecus edwardsi, Propithecus perrieri, Propithecus tattersalli, Propithecus verreauxi, Psammomys obesus, Pteronura brasiliensis, Puma concolor, Pygathrix cinerea, Pygathrix nigripes, Pygathrix nigripes, Rangifer tarandus, Rhinolophus sinicus, Rhinopithecus bieti, Rhinopithecus strykeri, Rousettus aegyptiacus, Saguinus bicolor, Saguinus geoffroyi, Saguinus imperator, Saguinus inustus, Saguinus labiatus, Saguinus midas, Saguinus mystax, Saguinus oedipus, Saiga tatarica, Saimiri cassiquiarensis, Saimiri macrodon, Saimiri oerstedii, Saimiri sciureus, Saimiri ustus, Sapajus apella, Sapajus macrocephalus, Scalopus aquaticus, Semnopithecus entellus, Semnopithecus hypoleucos, Semnopithecus johnii, Semnopithecus priam, Semnopithecus schistaceus, Semnopithecus vetulus, Sigmodon hispidus, Solenodon paradoxus, Spermophilus dauricus, Spilogale gracilis, Suricata suricatta, Symphalangus syndactylus, Tadarida brasiliensis, Tamandua tetradactyla, Tapirus indicus, Tapirus terrestris, Tarsius lariang, Tarsius wallacei, Thryonomys swinderianus, Tolypeutes matacus, Tonatia saurophila, Trachypithecus auratus, Trachypithecus crepusculus, Trachypithecus cristatus, Trachypithecus francoisi, Trachypithecus geei, Trachypithecus germaini, Trachypithecus hatinhensis, Trachypithecus laotum, Trachypithecus leucocephalus, Trachypithecus melamera, Trachypithecus obscurus, Trachypithecus phayrei, Trachypithecus pileatus, Tragulus javanicus, Trichechus manatus, Tupaia tana, Tursiops truncatus, Uropsilus gracilis, Ursus maritimus, Varecia rubra, Varecia variegata, Vicugna pacos, Vulpes lagopus, Xerus inauris, Zalophus californianus, Zapus hudsonius, Ziphius cavirostris\
Methods
\\ This alignment was created by making three edits (using Cactus) to the\ 241-way mammalian Zoonomia Cactus alignment\ (\ https://cglgenomics.ucsc.edu/data/cactus/).\
- \
- One additional cat genome, "Felis_catus_fca126" (GCA_018350175.1) was\ added as a sister taxa to the existing "Felis_catus" species \
- Five additional canine genomes were also added: canFam4,\ "Canis_lupus_dingo" (GCA_003254725.1), "Canis_lupus_orion"\ (GCA_905319855.2), "Nyctereutes_procyonoides" (GCA_905146905.1) and\ "Otocyon_megalotis" (GCA_017311455.1). "Canis_lupus" from the Zoonomia\ alignment was also renamed "Canis_lupus_VD" to reflect the fact that it\ corresponds to a "village dog" and not "wolf" sample. \
- The 43-species primates clade from the Zoonomia alignment was removed\ and replaced with the 243-way primates alignment from Identification of\ constrained sequence elements across 239 primate genomes, increasing the alignment by 200\ additional primate species. \
phyloP Conservation Scores
\\
phyloP scores were computed from the Cactus 447-way alignment using the\
phyloP program from the\
PHAST package.\
Per-base scores were produced with options\
--method LRT --mode CONACC --wig-scores; positive scores\
indicate conservation under purifying selection, negative scores indicate\
acceleration relative to neutral evolution.\
\
For the all-species tracks, base-composition and substitution-rate\
parameters were estimated from 4-fold degenerate sites using\
phyloFit (PHAST, EM algorithm, medium precision) under either the\
REV or strand-symmetric reversible (SSREV) substitution model. Background\
base frequencies were adjusted with modFreqs so that\
complementary bases (A/T and C/G) appear at equal expected frequencies,\
which is required for strand-symmetric scoring.\
\
For the primates-subset tracks, the alignment was restricted to the 233\
primate species and an independent phyloFit / phyloP run was performed on\
that sub-alignment using the SSREV model. All scores were encoded into\
wiggle format and loaded as either bigWig files (REV all-species,\
primates LRT) or wig SQL tables backed by .wib data files\
(SSREV all-species, SSREV primates).\
Phylogenic tree
\\ The phylogenic tree was established by the research described\ in A global catalog of whole-genome diversity from 233 primate\ species.\ \
Sequences
\\
\\ \ \\
\ count \common \
nameclade \scientific name \
(link to browser when existing)taxon id \
link to NCBI\ 001 human primates catarrhini Homo sapiens/hg38
reference species9606 \ 002 western gorilla primates catarrhini Gorilla gorilla
GCA_900006655.3_Susie39593 \ 003 Sumatran orangutan primates catarrhini Pongo abelii
GCA_002880775.3_Susie_PABv29601 \ 004 Eastern Gorilla primates catarrhini Gorilla beringei 499232 \ 005 chimpanzee primates catarrhini Pan troglodytes
GCA_002880755.3_Clint_PTRv29598 \ 006 Bornean orangutan primates catarrhini Pongo pygmaeus 9600 \ 007 Rhesus monkey primates catarrhini Macaca mulatta
rheMac109544 \ 008 gelada primates catarrhini Theropithecus gelada
GCF_003255815.1_Tgel_1.09565 \ 009 stump-tailed macaque primates catarrhini Macaca arctoides 9540 \ 010 Northern Talapoin Monkey primates catarrhini Miopithecus ogouensis 100488 \ 011 crab-eating macaque primates catarrhini Macaca fascicularis 9541 \ 012 Allen's swamp monkey primates catarrhini Allenopithecus nigroviridis 54135 \ 013 siamang primates catarrhini Symphalangus syndactylus 9590 \ 014 black crested mangabey primates catarrhini Lophocebus aterrimus 75566 \ 015 drill primates catarrhini Mandrillus leucophaeus 9568 \ 016 Bonnet Macaque primates catarrhini Macaca radiata 9548 \ 017 Red-capped Mangabey primates catarrhini Cercocebus torquatus 9530 \ 018 Golden-bellied Mangabey primates catarrhini Cercocebus chrysogaster 75569 \ 019 Owl-faced Monkey primates catarrhini Cercopithecus hamlyni 9536 \ 020 Siberut Macaque primates catarrhini Macaca siberu 244255 \ 021 pig-tailed macaque primates catarrhini Macaca nemestrina
GCF_000956065.1_Mnem_1.09545 \ 022 White-naped Mangabey primates catarrhini Cercocebus lunulatus (Cercocebus atys lunulatus) 75570 \ 023 Tonkean Macaque primates catarrhini Macaca tonkeana 40843 \ 024 Diana Monkey primates catarrhini Cercopithecus diana 36224 \ 025 red guenon primates catarrhini Erythrocebus patas 9538 \ 026 Northern Pig-tailed Macaque primates catarrhini Macaca leonina 90387 \ 027 Moor Macaque primates catarrhini Macaca maura 90383 \ 028 Guinea Baboon primates catarrhini Papio papio 100937 \ 029 hamadryas baboon primates catarrhini Papio hamadryas 9557 \ 030 liontail macaque primates catarrhini Macaca silenus 54601 \ 031 olive baboon primates catarrhini Papio anubis
GCA_000264685.2_Panu_3.09555 \ 032 Roloway Monkey primates catarrhini Cercopithecus roloway 1137049 \ 033 Kinda Baboon primates catarrhini Papio kindae 208091 \ 034 Chacma Baboon primates catarrhini Papio ursinus 36229 \ 035 Sun-tailed Monkey primates catarrhini Allochrocebus solatus 147650 \ 036 golden snub-nosed monkey primates catarrhini Rhinopithecus roxellana
GCF_007565055.1_ASM756505v161622 \ 037 Vervet Monkey primates catarrhini Chlorocebus pygerythrus 60710 \ 038 sooty mangabey primates catarrhini Cercocebus atys
GCF_000955945.1_Caty_1.09531 \ 039 green monkey primates catarrhini Chlorocebus sabaeus
GCA_000409795.2_Chlorocebus_sabeus_1.160711 \ 040 De Brazza's monkey primates catarrhini Cercopithecus neglectus 36227 \ 041 Yellow Baboon primates catarrhini Papio cynocephalus 9556 \ 042 Celebes crested macaque primates catarrhini Macaca nigra 54600 \ 043 proboscis monkey primates catarrhini Nasalis larvatus 43780 \ 044 Preuss's Monkey primates catarrhini Allochrocebus preussi 147649 \ 045 Putty-nosed Monkey primates catarrhini Cercopithecus nictitans 36228 \ 046 Javan Surili primates catarrhini Presbytis comata 78452 \ 047 Sykes' Monkey primates catarrhini Cercopithecus albogularis 36225 \ 048 LHoests Monkey primates catarrhini Allochrocebus lhoesti 100224 \ 049 Crowned Monkey primates catarrhini Cercopithecus pogonias 102108 \ 050 Southern Mitered Langur primates catarrhini Presbytis mitrata (Presbytis melalophos mitrata) 272115 \ 051 Grey-shanked Douc Langur primates catarrhini Pygathrix cinerea 693712 \ 052 Mona monkey primates catarrhini Cercopithecus mona 36226 \ 053 Spot-nosed Monkey primates catarrhini Cercopithecus petaurista 100487 \ 054 grivet primates catarrhini Chlorocebus aethiops 9534 \ 055 Lowes Monkey primates catarrhini Cercopithecus lowei 304410 \ 056 Northern Yellow-cheeked Crested Gibbon primates catarrhini Nomascus annamensis 1616038 \ 057 Red-cheeked Gibbon primates catarrhini Nomascus gabriellae 61852 \ 058 Japanese macaque primates catarrhini Macaca fuscata 9542 \ 059 Western Red Colobus primates catarrhini Piliocolobus badius 164648 \ 060 southern white-cheeked gibbon primates catarrhini Nomascus siki_a 9586 \ 061 Taiwan macaque primates catarrhini Macaca cyclopis 78449 \ 062 black-shanked douc langur primates catarrhini Pygathrix nigripes 310352 \ 063 King Colobus primates catarrhini Colobus polykomos 9572 \ 064 Black Crested Gibbon primates catarrhini Nomascus concolor 29089 \ 065 Udzungwa Red Colobus primates catarrhini Piliocolobus gordonorum 591933 \ 066 Gee's Golden Langur primates catarrhini Trachypithecus geei 164650 \ 067 Kloss's Gibbon primates catarrhini Hylobates klossii 9587 \ 068 Spectacled Leaf Monkey primates catarrhini Trachypithecus obscurus 54181 \ 069 Zanzibar Red Colobus primates catarrhini Piliocolobus kirkii 591937 \ 070 Indochinese Silvered Langur primates catarrhini Trachypithecus germaini 271260 \ 071 Hatinh Langur primates catarrhini Trachypithecus hatinhensis 867383 \ 072 Moustached Monkey primates catarrhini Cercopithecus cephus 9535 \ 073 Laotian Langur primates catarrhini Trachypithecus laotum 465718 \ 074 Francois's langur primates catarrhini Trachypithecus francoisi 54180 \ 075 Purple-faced Langur primates catarrhini Semnopithecus vetulus (Trachypithecus vetulus) 54137 \ 076 Capped Langur primates catarrhini Trachypithecus pileatus 164651 \ 077 Ugandan red Colobus primates catarrhini Piliocolobus tephrosceles
GCF_002776525.2_ASM277652v2591936 \ 078 Spangled Ebony Langur primates catarrhini Trachypithecus auratus 222416 \ 079 Red-tailed Monkey primates catarrhini Cercopithecus ascanius 36223 \ 080 Silvery Lutung primates catarrhini Trachypithecus cristatus 122765 \ 081 Nilgiri Langur primates catarrhini Semnopithecus johnii (Trachypithecus johnii) 66063 \ 082 Indochinese grey langur primates catarrhini Trachypithecus crepusculus (Trachypithecus phayrei crepuscula) 272121 \ 083 White-headed langur primates catarrhini Trachypithecus leucocephalus (Trachypithecus poliocephalus) 465719 \ 084 pygmy chimpanzee primates catarrhini Pan paniscus
GCA_000258655.2_panpan1.19597 \ 085 northern white-cheeked gibbon primates catarrhini Nomascus siki_b 9586 \ 086 Agile Gibbon primates catarrhini Hylobates agilis 9579 \ 087 Phayre's Leaf-monkey primates catarrhini Trachypithecus melamera n/a \ 088 Nepal Gray Langur primates catarrhini Semnopithecus schistaceus 2804203 \ 089 Abbott's Gray Gibbon primates catarrhini Hylobates abbotti (Hylobates muelleri abbotti) 716694 \ 090 Bornean Gibbon primates catarrhini Hylobates muelleri 9588 \ 091 Tufted Gray Langur primates catarrhini Semnopithecus priam 1208733 \ 092 Black-footed Gray Langur primates catarrhini Semnopithecus hypoleucos 1208734 \ 093 mantled guereza primates catarrhini Colobus guereza 33548 \ 094 Hanuman langur primates catarrhini Semnopithecus entellus 88029 \ 095 pileated gibbon primates catarrhini Hylobates pileatus 9589 \ 096 black snub-nosed monkey primates catarrhini Rhinopithecus bieti 61621 \ 097 Burmese snub-nosed monkey primates catarrhini Rhinopithecus strykeri 1194336 \ 098 Angolan colobus primates catarrhini Colobus angolensis
colAng154131 \ 099 Pileated Gibbon primates catarrhini Hylobates pileatus 9589 \ 100 black-shanked douc langur primates catarrhini Pygathrix nigripes 310352 \ 101 Milne-edwards' Macaque primates catarrhini Macaca thibetana 54602 \ 102 Phayre's Leaf-monkey primates catarrhini Trachypithecus phayrei 61618 \ 103 Assam macaque primates catarrhini Macaca assamensis 9551 \ 104 Eastern hoolock gibbon primates catarrhini Hoolock leuconedys 61851 \ 105 mandrill primates catarrhini Mandrillus sphinx 9561 \ 106 White-faced Saki primates platyrrhini Pithecia chrysocephala 2946515 \ 107 Monk Saki primates platyrrhini Pithecia hirsuta 2946516 \ 108 white-faced saki primates platyrrhini Pithecia pithecia 43777 \ 109 Mittermeier's Tapajós saki primates platyrrhini Pithecia mittermeieri 2946517 \ 110 Buffy Saki primates platyrrhini Pithecia albicans 2946514 \ 111 Pissinatti's saki primates platyrrhini Pithecia pissinattii (Pithecia pissinatti) 2946518 \ 112 Vanzolini's Bald-faced Saki primates platyrrhini Pithecia vanzolinii 2946519 \ 113 Bald-headed Uacari primates platyrrhini Cacajao calvus 30596 \ 114 Ayres Black Uakari primates platyrrhini Cacajao ayresi 535896 \ 115 Black-headed Uacari primates platyrrhini Cacajao melanocephalus 70825 \ 116 Black-headed Uacari primates platyrrhini Cacajao hosomi 535897 \ 117 Reddish-brown bearded saki primates platyrrhini Chiropotes sagulatus (Chiropotes chiropotes) 658221 \ 118 brown-backed bearded saki primates platyrrhini Chiropotes israelita 280163 \ 119 Collared Titi Monkey primates platyrrhini Cheracebus lugens 210166 \ 120 Brown Titi Monkey primates platyrrhini Plecturocebus brunneus 1812042 \ 121 Hoffmanns's titi monkey primates platyrrhini Plecturocebus hoffmannsi 78255 \ 122 Milton's Titi Monkey primates platyrrhini Plecturocebus miltoni 1812038 \ 123 Widow Monkey primates platyrrhini Cheracebus torquatus 30592 \ 124 Ashy Black Titi Monkey primates platyrrhini Plecturocebus cinerascens 1812037 \ 125 Prince Bernhard's Titi Monkey primates platyrrhini Plecturocebus bernhardi 1812036 \ 126 Yellow-handed Titi Monkey primates platyrrhini Cheracebus lucifer 2487712 \ 127 Coppery Titi Monkey primates platyrrhini Plecturocebus cupreus 202457 \ 128 Chestnut-bellied Titi primates platyrrhini Plecturocebus caligatus 867332 \ 129 Hershkovitzs Titi primates platyrrhini Plecturocebus dubius 2946520 \ 130 Red-bellied Titi Monkey primates platyrrhini Plecturocebus moloch 9523 \ 131 Groves' Titi primates platyrrhini Plecturocebus grovesi 2488670 \ 132 black-handed spider monkey primates platyrrhini Ateles geoffroyi_a 9509 \ 133 Widow Monkey primates platyrrhini Cheracebus regulus 1812110 \ 134 Guiana Spider Monkey primates platyrrhini Ateles paniscus 9510 \ 135 Black-faced Black Spider Monkey primates platyrrhini Ateles chamek 118643 \ 136 White-cheeked Spider Monkey primates platyrrhini Ateles marginatus 1529884 \ 137 White-bellied Spider Monkey primates platyrrhini Ateles belzebuth 9507 \ 138 Common Woolly Monkey primates platyrrhini Lagothrix lagothricha (Lagothrix lagotricha) 9519 \ 139 large-headed capuchin primates platyrrhini Sapajus macrocephalus (Sapajus apella macrocephalus) 1547595 \ 140 Spixs White-fronted Capuchin primates platyrrhini Cebus unicolor 1985288 \ 141 Central American spider monkey primates platyrrhini Ateles geoffroyi_b 9509 \ 142 Guinan Weeper Capuchin primates platyrrhini Cebus olivaceus 37295 \ 143 mantled howler monkey primates platyrrhini Alouatta palliata 30589 \ 144 white-fronted capuchin primates platyrrhini Cebus albifrons 9514 \ 145 Northern Night Monkey primates platyrrhini Aotus trivirgatus 9505 \ 146 Grey-handed Night Monkey primates platyrrhini Aotus griseimembra 292213 \ 147 Black-and-gold Howler Monkey primates platyrrhini Alouatta caraya 9502 \ 148 Spixs Night Monkey primates platyrrhini Aotus vociferans 57176 \ 149 Red-handed Howler Monkey primates platyrrhini Alouatta belzebul 30590 \ 150 Red-handed Howler Monkey primates platyrrhini Alouatta discolor 2905217 \ 151 Azara's Night Monkey primates platyrrhini Aotus azarae (Aotus azarai) 30591 \ 152 Purús Red Howler Monkey primates platyrrhini Alouatta puruensis (Alouatta seniculus puruensis) 1347729 \ 153 Black Howler Monkey primates platyrrhini Alouatta nigerrima (Alouatta belzebul) 30590 \ 154 Guianan Red Howler Monkey primates platyrrhini Alouatta macconnelli 198115 \ 155 Colombian Red Howler Monkey primates platyrrhini Alouatta juara 2946512 \ 156 Colombian Red Howler Monkey primates platyrrhini Alouatta seniculus 9503 \ 157 tufted capuchin primates platyrrhini Sapajus apella 9515 \ 158 Ma's night monkey primates platyrrhini Aotus nancymaae
GCA_000952055.2_Anan_2.037293 \ 159 Bolivian squirrel monkey primates platyrrhini Saimiri boliviensis
GCF_016699345.1_BCM_Sbol_2.027679 \ 160 White-nosed Saki primates platyrrhini Chiropotes albinasus 198627 \ 161 Black Mantle Tamarin primates platyrrhini Leontocebus nigricollis 9489 \ 162 brown-mantled tamarin primates platyrrhini Leontocebus fuscicollis 9487 \ 163 Illiger's saddle-back tamarin primates platyrrhini Leontocebus illigeri (Leontocebus fuscicollis illigeri) 881947 \ 164 Cotton-headed Tamarin primates platyrrhini Saguinus oedipus 9490 \ 165 Pied Tamarin primates platyrrhini Saguinus bicolor 37588 \ 166 Geoffroy's Tamarin primates platyrrhini Saguinus geoffroyi 43778 \ 167 White-fronted Titi Monkey primates platyrrhini Saguinus inustus 1079039 \ 168 Moustached Tamarin primates platyrrhini Saguinus mystax 9488 \ 169 tamarin primates platyrrhini Saguinus imperator 9491 \ 170 Guianan Squirrel Monkey primates platyrrhini Saimiri sciureus 9521 \ 171 Red-chested Mustached Tamarin primates platyrrhini Saguinus labiatus 78454 \ 172 Goeldi's Monkey primates platyrrhini Callimico goeldii 9495 \ 173 Black-crowned Central American Squirrel Monkey primates platyrrhini Saimiri oerstedii 70928 \ 174 Golden-headed Lion Tamarin primates platyrrhini Leontopithecus chrysomelas 57374 \ 175 golden lion tamarin primates platyrrhini Leontopithecus rosalia 30588 \ 176 Humboldt's Squirrel Monkey primates platyrrhini Saimiri cassiquiarensis 2946521 \ 177 bare-eared squirrel monkey primates platyrrhini Saimiri ustus 66265 \ 178 Ecuadorian squirrel monkey primates platyrrhini Saimiri macrodon 2946522 \ 179 white-tufted-ear marmoset primates platyrrhini Callithrix jacchus 9483 \ 180 Eastern Pygmy Marmoset primates platyrrhini Cebuella niveiventris 2826950 \ 181 Western Pygmy Marmoset primates platyrrhini Cebuella pygmaea 9493 \ 182 Black And White Tassel-ear Marmoset primates platyrrhini Mico humeralifer 52232 \ 183 Black-crowned Dwarf Marmoset primates platyrrhini Callibella humilis (Mico humilis) 666519 \ 184 Mico schneideri primates platyrrhini Mico schneideri n/a \ 185 Silvery Marmoset primates platyrrhini Mico argentatus 9482 \ 186 Midas tamarin primates platyrrhini Saguinus midas 30586 \ 187 Wieds Marmoset primates platyrrhini Callithrix kuhlii 867363 \ 188 Geoffroy's Tufted-ear Marmoset primates platyrrhini Callithrix geoffroyi 52231 \ 189 Horsfield's tarsier primates tarsiidae Cephalopachus bancanus 9477 \ 190 Philippine tarsier primates tarsiidae Carlito syrichta
tarSyr21868482 \ 191 Lariang Tarsier primates tarsiidae Tarsius lariang 630277 \ 192 Wallace's Tarsier primates tarsiidae Tarsius wallacei 981131 \ 193 aye-aye primates strepsirrhini Daubentonia madagascariensis 31869 \ 194 Crowned Sifaka primates strepsirrhini Propithecus coronatus (Propithecus deckenii coronatus) 475619 \ 195 Perrier's Sifaka primates strepsirrhini Propithecus perrieri 989338 \ 196 ruffed lemur primates strepsirrhini Varecia variegata 9455 \ 197 Diademed Sifaka primates strepsirrhini Propithecus diadema 83281 \ 198 Milne-Edwards Sifaka primates strepsirrhini Propithecus edwardsi 543559 \ 199 babakoto primates strepsirrhini Indri indri 34827 \ 200 Golden-crowned Sifaka primates strepsirrhini Propithecus tattersalli 30601 \ 201 Eastern Woolly Lemur primates strepsirrhini Avahi laniger 122246 \ 202 Verreauxs Sifaka primates strepsirrhini Propithecus verreauxi 34825 \ 203 Peyrieras Woolly Lemur primates strepsirrhini Avahi peyrierasi 1313323 \ 204 Red Ruffed Lemur primates strepsirrhini Varecia rubra 554167 \ 205 greater bamboo lemur primates strepsirrhini Prolemur simus 1328070 \ 206 Red-bellied Lemur primates strepsirrhini Eulemur rubriventer 34829 \ 207 mongoose lemur primates strepsirrhini Eulemur mongoz 34828 \ 208 Geoffroys Dwarf Lemur primates strepsirrhini Cheirogaleus major 47177 \ 209 Crowned Lemur primates strepsirrhini Eulemur coronatus 13514 \ 210 black lemur primates strepsirrhini Eulemur macaco 30602 \ 211 lesser dwarf lemur primates strepsirrhini Cheirogaleus medius 9460 \ 212 Sclater's lemur primates strepsirrhini Eulemur flavifrons 87288 \ 213 Coquerel's sifaka primates strepsirrhini Propithecus coquerelli (Propithecus coquereli)
proCoq1379532 \ 214 Collared Brown Lemur primates strepsirrhini Eulemur collaris (Eulemur fulvus collaris) 47178 \ 215 Red-tailed Sportive Lemur primates strepsirrhini Lepilemur ruficaudatus 78866 \ 216 Red Brown Lemur primates strepsirrhini Eulemur rufus 859983 \ 217 Sanfords Brown Lemur primates strepsirrhini Eulemur sanfordi 122225 \ 218 White-fronted Lemur primates strepsirrhini Eulemur albifrons 1215604 \ 219 Gray's Sportive Lemur primates strepsirrhini Lepilemur dorsalis 78583 \ 220 brown lemur primates strepsirrhini Eulemur fulvus 13515 \ 221 Sahafary Sportive Lemur primates strepsirrhini Lepilemur septentrionalis 78584 \ 222 Sambirano Lesser Bamboo Lemur primates strepsirrhini Hapalemur occidentalis 867377 \ 223 Alaotra Reed Lemur primates strepsirrhini Hapalemur alaotrensis (Hapalemur griseus alaotrensis) 122220 \ 224 Eastern Lesser Bamboo Lemur primates strepsirrhini Hapalemur griseus 13557 \ 225 Ankarana Sportive Lemur primates strepsirrhini Lepilemur ankaranensis 342401 \ 226 ring-tailed lemur primates strepsirrhini Lemur catta 9447 \ 227 gray bamboo lemur primates strepsirrhini Hapalemur gilberti 3043110 \ 228 Rusty-gray Lesser Bamboo Lemur primates strepsirrhini Hapalemur meridionalis 3043112 \ 229 Demidoffs Dwarf Galago primates strepsirrhini Galagoides demidoff 89672 \ 230 northern giant mouse lemur primates strepsirrhini Mirza zaza 339999 \ 231 gray mouse lemur primates strepsirrhini Microcebus murinus
GCA_000165445.3_Mmur_3.030608 \ 232 small-eared galago primates strepsirrhini Otolemur garnettii
otoGar330611 \ 233 Northern Lesser Galago primates strepsirrhini Galago senegalensis 9465 \ 234 Thick-tailed Greater Galago primates strepsirrhini Otolemur crassicaudatus 9463 \ 235 Grey Slender Loris primates strepsirrhini Loris lydekkerianus 300163 \ 236 slender loris primates strepsirrhini Loris tardigradus 9468 \ 237 West African Potto primates strepsirrhini Perodicticus potto 9472 \ 238 East African Potto primates strepsirrhini Perodicticus ibeanus (Perodicticus potto ibeanus) 261737 \ 239 Moholi bushbaby primates strepsirrhini Galago moholi 30609 \ 240 Pygmy Slow Loris primates strepsirrhini Nycticebus pygmaeus (Xanthonycticebus pygmaeus) 101278 \ 241 Bengal slow loris primates strepsirrhini Nycticebus bengalensis 261741 \ 242 Calabar Angwantibo primates strepsirrhini Arctocebus calabarensis 261739 \ 243 slow loris primates strepsirrhini Nycticebus coucang 9470 \ 244 jaguar carnivora Panthera onca
GCA_004023805.1_PanOnc_v1_BIUU9690 \ 245 leopard carnivora Panthera pardus
GCA_001857705.1_PanPar1.09691 \ 246 giant panda carnivora Ailuropoda melanoleuca
GCA_002007445.1_ASM200744v19646 \ 247 Hawaiian monk seal carnivora Neomonachus schauinslandi
GCA_002201575.1_ASM220157v129088 \ 248 California sea lion carnivora Zalophus californianus
GCA_004024565.1_ZalCal_v1_BIUU9704 \ 249 Greenland wolf carnivora Canis lupus orion
GCA_905319855.2_mCanLor1.22605939 \ 250 Pacific walrus carnivora Odobenus rosmarus
odoRosDiv19707 \ 251 domestic cat (Fca126) carnivora Felis catus fca126 (Felis catus)
GCF_018350175.1_F.catus_Fca126_mat1.09685 \ 252 northern elephant seal carnivora Mirounga angustirostris
GCA_004023865.1_MirAng_v1_BIUU9716 \ 253 domestic cat carnivora Felis catus
felCat89685 \ 254 domestic dog (BS72/Village Dog) carnivora Canis lupus familiaris
GCA_004027395.1_CanFam_VD_v1_BIUU\ 255 German Shepherd dog (Mischka) carnivora Canis lupus familiaris (CanFam4) (Canis lupus familiaris)
canFam4\ 256 dingo carnivora Canis lupus dingo 286419 \ 257 raccoon dog carnivora Nyctereutes procyonoides 34880 \ 258 fossa carnivora Cryptoprocta ferox 94188 \ 259 polar bear carnivora Ursus maritimus
GCA_000687225.1_UrsMar_1.029073 \ 260 Asian palm civet carnivora Paradoxurus hermaphroditus
GCA_004024585.1_ParHer_v1_BIUU71117 \ 261 African hunting dog carnivora Lycaon pictus
GCA_001887905.1_LycPicSAfr1.09622 \ 262 Arctic fox carnivora Vulpes lagopus
GCA_004023825.1_VulLag_v1_BIUU494514 \ 263 dog carnivora Canis lupus familiaris
GCF_000002285.3_CanFam3.19615 \ 264 striped hyena carnivora Hyaena hyaena
GCA_004023945.1_HyaHya_v1_BIUU95912 \ 265 n/a carnivora Acinonyx jubatus
GCA_001443585.1_aciJub132536 \ 266 tiger carnivora Panthera tigris
GCA_000464555.1_PanTig1.09694 \ 267 Sea otter carnivora Enhydra lutris
GCA_002288905.2_ASM228890v234882 \ 268 giant otter carnivora Pteronura brasiliensis 9672 \ 269 bat-eared fox carnivora Otocyon megalotis 9624 \ 270 Weddell seal carnivora Leptonychotes weddellii
GCA_000349705.1_LepWed1.09713 \ 271 Lesser panda carnivora Ailurus fulgens
GCA_002007465.1_ASM200746v19649 \ 272 ratel carnivora Mellivora capensis
GCA_004024625.1_MelCap_v1_BIUU9664 \ 273 banded mongoose carnivora Mungos mungo
GCA_004023785.1_MunMun_v1_BIUU210652 \ 274 dwarf mongoose carnivora Helogale parvula
GCA_004023845.1_HelPar_v1_BIUU210647 \ 275 meerkat carnivora Suricata suricatta
GCA_004023905.1_SurSur_v1_BIUU37032 \ 276 puma carnivora Puma concolor
GCA_003327715.1_PumCon1.09696 \ 277 black-footed cat carnivora Felis nigripes
GCA_004023925.1_FelNig_v1_BIUU61379 \ 278 European polecat carnivora Mustela putorius
GCA_000239315.1_MusPutFurMale1.09668 \ 279 western spotted skunk carnivora Spilogale gracilis
GCA_004023965.1_SpiGra_v1_BIUU30551 \ 280 Sumatran rhinoceros laurasiatheria Dicerorhinus sumatrensis
GCA_002844835.1_ASM284483v189632 \ 281 black rhinoceros laurasiatheria Diceros bicornis
GCA_004027315.1_DicBicMic_v1_BIUU9805 \ 282 Asiatic tapir laurasiatheria Tapirus indicus
GCA_004024905.1_TapInd_v1_BIUU9802 \ 283 Brazilian tapir laurasiatheria Tapirus terrestris
GCA_004025025.1_TapTer_v1_BIUU9801 \ 284 northern white rhinoceros laurasiatheria Ceratotherium simum cottoni 310713 \ 285 ass laurasiatheria Equus asinus
GCA_001305755.1_ASM130575v19793 \ 286 Southern white rhinoceros laurasiatheria Ceratotherium simum
GCA_000283155.1_CerSimSim1.09807 \ 287 Przewalski's horse laurasiatheria Equus przewalskii
GCA_000696695.1_Burgud9798 \ 288 horse laurasiatheria Equus caballus
GCA_000002305.1_EquCab2.09796 \ 289 Malayan pangolin laurasiatheria Manis javanica
GCA_001685135.1_ManJav1.09974 \ 290 Chinese pangolin laurasiatheria Manis pentadactyla
GCA_000738955.1_M_pentadactyla-1.1.1143292 \ 291 Hispaniolan solenodon laurasiatheria Solenodon paradoxus 79805 \ 292 eastern mole laurasiatheria Scalopus aquaticus
GCA_004024925.1_ScaAqu_v1_BIUU71119 \ 293 gracile shrew mole laurasiatheria Uropsilus gracilis
GCA_004024945.1_UroGra_v1_BIUU182669 \ 294 star-nosed mole laurasiatheria Condylura cristata
GCF_000260355.1_ConCri1.0143302 \ 295 western European hedgehog laurasiatheria Erinaceus europaeus
GCA_000296755.1_EriEur2.09365 \ 296 European shrew laurasiatheria Sorex araneus
sorAra242254 \ 297 Indochinese shrew laurasiatheria Crocidura indochinensis
GCA_004027635.1_CroInd_v1_BIUU876679 \ 298 Hoffmann's two-fingered sloth xenarthra Choloepus hoffmanni
GCA_000164785.2_C_hoffmanni-2.0.19358 \ 299 nine-banded armadillo xenarthra Dasypus novemcinctus
GCA_000208655.2_Dasnov3.09361 \ 300 giant anteater xenarthra Myrmecophaga tridactyla
GCA_004026745.1_MyrTri_v1_BIUU71006 \ 301 southern tamandua xenarthra Tamandua tetradactyla
GCA_004025105.1_TamTet_v1_BIUU48850 \ 302 placentals xenarthra Tolypeutes matacus 183749 \ 303 southern two-toed sloth xenarthra Choloepus didactylus
GCA_004027855.1_ChoDid_v1_BIUU27675 \ 304 screaming hairy armadillo xenarthra Chaetophractus vellerosus
GCA_004027955.1_ChaVel_v1_BIUU340076 \ 305 North Pacific right whale artiodactyla Eubalaena japonica 302098 \ 306 grey whale artiodactyla Eschrichtius robustus 9764 \ 307 hippopotamus artiodactyla Hippopotamus amphibius
GCA_004027065.1_HipAmp_v1_BIUU9833 \ 308 Minke whale artiodactyla Balaenoptera acutorostrata
GCA_000493695.1_BalAcu1.09767 \ 309 beluga whale artiodactyla Delphinapterus leucas
GCA_002288925.2_ASM228892v29749 \ 310 Antarctic minke whale artiodactyla Balaenoptera bonaerensis
GCA_000978805.1_ASM97880v133556 \ 311 boutu artiodactyla Inia geoffrensis 9725 \ 312 harbor porpoise artiodactyla Phocoena phocoena 9742 \ 313 narwhal artiodactyla Monodon monoceros
GCA_004026685.1_MonMon_M_v1_BIUU40151 \ 314 Yangtze River dolphin artiodactyla Lipotes vexillifer
GCA_000442215.1_Lipotes_vexillifer_v1118797 \ 315 killer whale artiodactyla Orcinus orca
orcOrc19733 \ 316 Ganges River dolphin artiodactyla Platanista gangetica 118798 \ 317 Yangtze finless porpoise artiodactyla Neophocaena asiaeorientalis
GCA_003031525.1_Neophocaena_asiaeorientalis_V1189058 \ 318 Sowerby's beaked whale artiodactyla Mesoplodon bidens 48745 \ 319 alpaca artiodactyla Vicugna pacos
GCA_000767525.1_Vi_pacos_V1.030538 \ 320 Cuvier's beaked whale" artiodactyla Ziphius cavirostris 9760 \ 321 Bactrian camel artiodactyla Camelus bactrianus
GCA_000767855.1_Ca_bactrianus_MBC_1.09837 \ 322 Arabian camel artiodactyla Camelus dromedarius
GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.09838 \ 323 wild Bactrian camel artiodactyla Camelus ferus
GCA_000311805.2_CB1419612 \ 324 pygmy sperm whale artiodactyla Kogia breviceps 27615 \ 325 Chacoan peccary artiodactyla Catagonus wagneri
GCA_004024745.1_CatWag_v1_BIUU51154 \ 326 reindeer artiodactyla Rangifer tarandus
GCA_004026565.1_RanTarSib_v1_BIUU9870 \ 327 Pere David's deer artiodactyla Elaphurus davidianus
GCA_002443075.1_Milu1.043332 \ 328 okapi artiodactyla Okapia johnstoni
GCA_001660835.1_ASM166083v186973 \ 329 Masai giraffe artiodactyla Giraffa tippelskirchi
GCA_001651235.1_ASM165123v1439328 \ 330 Siberian musk deer artiodactyla Moschus moschiferus
GCA_004024705.1_MosMos_v1_BIUU68415 \ 331 water buffalo artiodactyla Bubalus bubalis
GCA_000471725.1_UMD_CASPUR_WB_2.089462 \ 332 cow artiodactyla Bos taurus
GCA_000003205.6_Btau_5.0.19913 \ 333 pronghorn artiodactyla Antilocapra americana
GCA_004027515.1_AntAmePen_v1_BIUU9891 \ 334 white-tailed deer artiodactyla Odocoileus virginianus
GCA_002102435.1_Ovir.te_1.09874 \ 335 aoudad artiodactyla Ammotragus lervia
GCA_002201775.1_ALER1.09899 \ 336 bighorn sheep artiodactyla Ovis canadensis
GCA_004026945.1_OviCan_v1_BIUU37174 \ 337 goat artiodactyla Capra hircus
GCA_001704415.1_ARS19925 \ 338 Nilgiri tahr artiodactyla Hemitragus hylocrius
GCA_004026825.1_HemHyl_v1_BIUU330464 \ 339 hirola artiodactyla Beatragus hunteri
GCA_004027495.1_BeaHun_v1_BIUU59527 \ 340 wild yak artiodactyla Bos mutus
bosMut172004 \ 341 American bison artiodactyla Bison bison
GCA_000754665.1_Bison_UMD1.09901 \ 342 sheep artiodactyla Ovis aries
GCA_000298735.2_Oar_v4.09940 \ 343 chiru artiodactyla Pantholops hodgsonii
GCA_000400835.1_PHO1.059538 \ 344 wild goat artiodactyla Capra aegagrus
GCA_000978405.1_CapAeg_1.09923 \ 345 Java mouse-deer artiodactyla Tragulus javanicus
GCA_004024965.1_TraJav_v1_BIUU9849 \ 346 pig artiodactyla Sus scrofa
susScr39823 \ 347 zebu cattle artiodactyla Bos indicus
GCA_000247795.2_Bos_indicus_1.09915 \ 348 common bottlenose dolphin artiodactyla Tursiops truncatus
GCA_001922835.1_NIST_Tur_tru_v19739 \ 349 Saiga antelope artiodactyla Saiga tatarica
GCA_004024985.1_SaiTat_v1_BIUU34875 \ 350 Chinese rufous horseshoe bat chiroptera Rhinolophus sinicus
GCA_001888835.1_ASM188883v189399 \ 351 black flying fox chiroptera Pteropus alecto
pteAle19402 \ 352 Cantor's roundleaf bat chiroptera Hipposideros galeritus 58069 \ 353 Egyptian rousette chiroptera Rousettus aegyptiacus
GCA_004024865.1_RouAeg_v1_BIUU9407 \ 354 long-tongued fruit bat chiroptera Macroglossus sobrinus 326083 \ 355 large flying fox chiroptera Pteropus vampyrus
GCF_000151845.1_Pvam_2.0132908 \ 356 Brazilian free-tailed bat chiroptera Tadarida brasiliensis
GCA_004025005.1_TadBra_v1_BIUU9438 \ 357 great roundleaf bat chiroptera Hipposideros armiger
GCA_001890085.1_ASM189008v1186990 \ 358 straw-colored fruit bat chiroptera Eidolon helvum
eidHel177214 \ 359 Antillean ghost-faced bat chiroptera Mormoops blainvillei
GCA_004026545.1_MorMeg_v1_BIUU118852 \ 360 tailed tailless bat chiroptera Anoura caudifer
GCA_004027475.1_AnoCau_v1_BIUU27642 \ 361 common vampire bat chiroptera Desmodus rotundus
GCA_002940915.2_ASM294091v29430 \ 362 hairy big-eared bat chiroptera Micronycteris hirsuta
GCA_004026765.1_MicHir_v1_BIUU148065 \ 363 stripe-headed round-eared bat chiroptera Tonatia saurophila
GCA_004024845.1_TonSau_v1_BIUU171122 \ 364 Seba's short-tailed bat chiroptera Carollia perspicillata
GCA_004027735.1_CarPer_v1_BIUU40233 \ 365 Jamaican fruit-eating bat chiroptera Artibeus jamaicensis
GCA_004027435.1_ArtJam_v1_BIUU9417 \ 366 Indian false vampire chiroptera Megaderma lyra
GCA_004026885.1_MegLyr_v1_BIUU9413 \ 367 Schreibers' long-fingered bat chiroptera Miniopterus schreibersii
GCA_004026525.1_MinSch_v1_BIUU9433 \ 368 greater bulldog bat chiroptera Noctilio leporinus
GCA_004026585.1_NocLep_v1_BIUU94963 \ 369 Natal long-fingered bat chiroptera Miniopterus natalensis
GCF_001595765.1_Mnat.v1291302 \ 370 hog-nosed bat chiroptera Craseonycteris thonglongyai
GCA_004027555.1_CraTho_v1_BIUU208972 \ 371 Parnell's mustached bat chiroptera Pteronotus parnellii
ptePar159476 \ 372 greater mouse-eared bat chiroptera Myotis myotis
GCA_004026985.1_MyoMyo_v1_BIUU51298 \ 373 Ashy-gray tube-nosed bat chiroptera Murina feae (Murina aurata feae)
GCA_004026665.1_MurFea_v1_BIUU1453894 \ 374 David's myotis chiroptera Myotis davidii
myoDav1225400 \ 375 Brandt's bat chiroptera Myotis brandtii
myoBra1109478 \ 376 big brown bat chiroptera Eptesicus fuscus
GCF_000308155.1_EptFus1.029078 \ 377 red bat chiroptera Lasiurus borealis
GCA_004026805.1_LasBor_v1_BIUU258930 \ 378 little brown bat chiroptera Myotis lucifugus
myoLuc259463 \ 379 common pipistrelle chiroptera Pipistrellus pipistrellus
GCA_004026625.1_PipPip_v1_BIUU59474 \ 380 African savanna elephant afrotheria Loxodonta africana
GCA_000001905.1_Loxafr3.09785 \ 381 Florida manatee afrotheria Trichechus manatus
GCA_000243295.1_TriManLat1.09778 \ 382 yellow-spotted hyrax afrotheria Heterohyrax brucei
GCA_004026845.1_HetBruBak_v1_BIUU77598 \ 383 Cape rock hyrax afrotheria Procavia capensis
GCA_004026925.1_ProCapCap_v1_BIUU9813 \ 384 aardvark afrotheria Orycteropus afer 9818 \ 385 Cape golden mole afrotheria Chrysochloris asiatica
GCA_004027935.1_ChrAsi_v1_BIUU185453 \ 386 Cape elephant shrew afrotheria Elephantulus edwardii
eleEdw128737 \ 387 Talazac's shrew tenrec afrotheria Microgale talazaci (Nesogale talazaci)
GCA_004026705.1_MicTal_v1_BIUU2583312 \ 388 small Madagascar hedgehog afrotheria Echinops telfairi
GCA_000313985.1_EchTel2.09371 \ 389 Sunda flying lemur euarchontoglires Galeopterus variegatus
GCA_004027255.1_GalVar_v1_BIUU482537 \ 390 Chinese tree shrew euarchontoglires Tupaia chinensis
tupChi1246437 \ 391 South African ground squirrel euarchontoglires Xerus inauris
GCA_004024805.1_XerIna_v1_BIUU234690 \ 392 large tree shrew euarchontoglires Tupaia tana 70687 \ 393 mountain beaver euarchontoglires Aplodontia rufa
GCA_004027875.1_AplRuf_v1_BIUU51342 \ 394 Alpine marmot euarchontoglires Marmota marmota
GCF_001458135.1_marMar2.19993 \ 395 Daurian ground squirrel euarchontoglires Spermophilus dauricus
GCA_002406435.1_ASM240643v199837 \ 396 crested porcupine euarchontoglires Hystrix cristata
GCA_004026905.1_HysCri_v1_BIUU10137 \ 397 thirteen-lined ground squirrel euarchontoglires Ictidomys tridecemlineatus
speTri243179 \ 398 American beaver euarchontoglires Castor canadensis
GCA_004027675.1_CasCan_v1_BIUU51338 \ 399 long-tailed chinchilla euarchontoglires Chinchilla lanigera
chiLan134839 \ 400 punctate agouti euarchontoglires Dasyprocta punctata 34846 \ 401 pacarana euarchontoglires Dinomys branickii
GCA_004027595.1_DinBra_v1_BIUU108858 \ 402 fat dormouse euarchontoglires Glis glis
GCA_004027185.1_GliGli_v1_BIUU41261 \ 403 northern gundi euarchontoglires Ctenodactylus gundi
GCA_004027205.1_CteGun_v1_BIUU10166 \ 404 naked mole-rat euarchontoglires Heterocephalus glaber
GCA_000247695.1_HetGla_female_1.010181 \ 405 Patagonian cavy euarchontoglires Dolichotis patagonum
GCA_004027295.1_DolPat_v1_BIUU29091 \ 406 capybara euarchontoglires Hydrochoerus hydrochaeris
GCA_004027455.1_HydHyd_v1_BIUU10149 \ 407 Montane guinea pig euarchontoglires Cavia tschudii
GCA_004027695.1_CavTsc_v1_BIUU143287 \ 408 domestic guinea pig euarchontoglires Cavia porcellus
GCA_000151735.1_Cavpor3.010141 \ 409 degu euarchontoglires Octodon degus
GCA_000260255.1_OctDeg1.010160 \ 410 lowland paca euarchontoglires Cuniculus paca 108852 \ 411 social tuco-tuco euarchontoglires Ctenomys sociabilis
GCA_004027165.1_CteSoc_v1_BIUU43321 \ 412 Damara mole-rat euarchontoglires Fukomys damarensis
fukDam1885580 \ 413 woodland dormouse euarchontoglires Graphiurus murinus 51346 \ 414 Desmarest's hutia euarchontoglires Capromys pilorides
GCA_004027915.1_CapPil_v1_BIUU34842 \ 415 Upper Galilee mountains blind mole rat euarchontoglires Nannospalax galili
GCA_000622305.1_S.galili_v1.01026970 \ 416 nutria euarchontoglires Myocastor coypus
GCA_004027025.1_MyoCoy_v1_BIUU10157 \ 417 hazel dormouse euarchontoglires Muscardinus avellanarius
GCA_004027005.1_MusAve_v1_BIUU39082 \ 418 dassie-rat euarchontoglires Petromus typicus
GCA_004026965.1_PetTyp_v1_BIUU10183 \ 419 greater cane rat euarchontoglires Thryonomys swinderianus
GCA_004025085.1_ThrSwi_v1_BIUU10169 \ 420 snowshoe hare euarchontoglires Lepus americanus
GCA_004026855.1_LepAme_v1_BIUU48086 \ 421 Gambian giant pouched rat euarchontoglires Cricetomys gambianus
GCA_004027575.1_CriGam_v1_BIUU10085 \ 422 Prairie deer mouse euarchontoglires Peromyscus maniculatus
GCF_000500345.1_Pman_1.010042 \ 423 southern grasshopper mouse euarchontoglires Onychomys torridus
GCA_004026725.1_OnyTor_v1_BIUU38674 \ 424 rabbit euarchontoglires Oryctolagus cuniculus
GCA_000003625.1_OryCun2.09986 \ 425 muskrat euarchontoglires Ondatra zibethicus
GCA_004026605.1_OndZib_v1_BIUU10060 \ 426 northern mole vole euarchontoglires Ellobius talpinus
GCA_001685095.1_ETalpinus_0.1329620 \ 427 Mongolian gerbil euarchontoglires Meriones unguiculatus
GCA_004026785.1_MerUng_v1_BIUU10047 \ 428 fat sand rat euarchontoglires Psammomys obesus
GCA_002215935.1_ASM221593v148139 \ 429 house mouse euarchontoglires Mus musculus
mm1010090 \ 430 Chinese hamster euarchontoglires Cricetulus griseus
GCA_900186095.1_CHOK1S_HZDv110029 \ 431 Norway rat euarchontoglires Rattus norvegicus
GCF_000001895.5_Rnor_6.010116 \ 432 western wild mouse euarchontoglires Mus spretus
GCA_001624865.1_SPRET_EiJ_v110096 \ 433 meadow jumping mouse euarchontoglires Zapus hudsonius
GCA_004024765.1_ZapHud_v1_BIUU160400 \ 434 prairie vole euarchontoglires Microtus ochrogaster
micOch179684 \ 435 Ryukyu mouse euarchontoglires Mus caroli
GCA_900094665.2_CAROLI_EIJ_v1.110089 \ 436 Egyptian spiny mouse euarchontoglires Acomys cahirinus
GCA_004027535.1_AcoCah_v1_BIUU10068 \ 437 Gobi jerboa euarchontoglires Allactaga bullata (Orientallactaga bullata)
GCA_004027895.1_AllBul_v1_BIUU1041416 \ 438 shrew mouse euarchontoglires Mus pahari
GCF_900095145.1_PAHARI_EIJ_v1.110093 \ 439 Transcaucasian mole vole euarchontoglires Ellobius lutescens
GCA_001685075.1_ASM168507v139086 \ 440 hispid cotton rat euarchontoglires Sigmodon hispidus
GCA_004025045.1_SigHis_v1_BIUU42415 \ 441 lesser Egyptian jerboa euarchontoglires Jaculus jaculus
GCA_000280705.1_JacJac1.051337 \ 442 Brazilian guinea pig euarchontoglires Cavia aperea
cavApe137548 \ 443 golden hamster euarchontoglires Mesocricetus auratus
GCA_000349665.1_MesAur1.010036 \ 444 Stephens's kangaroo rat euarchontoglires Dipodomys stephensi
GCA_004024685.1_DipSte_v1_BIUU323379 \ 445 American pika euarchontoglires Ochotona princeps
GCA_000292845.1_OchPri3.09978 \ 446 Ord's kangaroo rat euarchontoglires Dipodomys ordii
dipOrd210020 \ 447 little pocket mouse euarchontoglires Perognathus longimembris 38669
\ Table 1. Genome assemblies included in the 447-way Conservation track.\
References
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Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 18\ shortLabel ENCFF978IHV_ENCFF221TSA_ENCFF619JXN_ENCFF227NGR\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=Caco-2 biosampleType=cell_line donor=ENCDO000ACR dataType=typeCcres\ track ENCFF978IHV_ENCFF221TSA_ENCFF619JXN_ENCFF227NGR\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF803EMO ENCSR000AUZ Peak bigBed 5 B cell female adult (27 years) EZH2 peaks 4 101 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/e94783a0-4658-4e2d-aa15-67461755a944/ENCFF803EMO.bigBed\ labelFields none\ longLabel B cell female adult (27 years) EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF803EMO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF809XXE ENCSR000BQE Signal bigWig Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour CTCF signal 2 101 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/fb11b1e8-aa5f-439f-83d1-d01adfa91bce/ENCFF809XXE.bigWig\ color 0,176,240\ longLabel Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000BQE Signal\ track wgEncodeReg4Epigenetics_ENCFF809XXE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF419TJX ENCSR010HIU + strand bigWig Placenta tissue male embryo + strand total RNA-seq signal 2 101 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/088681c0-2dbe-47f5-a9f3-0c3565177efc/ENCFF419TJX.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR010HIU + strand\ track wgEncodeReg4RnaSeq_ENCFF419TJX\ type bigWig\ visibility full\ encTfChipPkENCFF771IAW GM12878 DPF2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in GM12878 from ENCODE 3 (ENCFF771IAW) 0 101 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in GM12878 from ENCODE 3 (ENCFF771IAW)\ parent encTfChipPk off\ shortLabel GM12878 DPF2\ subGroups cellType=GM12878 factor=DPF2\ track encTfChipPkENCFF771IAW\ chainHprcGCA_018504055v1 HG02080.pat chain GCA_018504055.1 HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 101 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504055.1\ parent hprcChainNetViewchain off\ priority 83\ shortLabel HG02080.pat\ subGroups view=chain sample=s083 population=eas subpop=khv hap=pat\ track chainHprcGCA_018504055v1\ type chain GCA_018504055.1\ hprcInsertsV1 Insertions bigBed 9 + Deletions in hg38 = Insertion in the HPRC assemblies 0 101 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcInsertsV1.bb\ filter.querySize 1\ group hprc\ itemRgb on\ labelFields label\ longLabel Deletions in hg38 = Insertion in the HPRC assemblies\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1\ priority 101\ shortLabel Insertions\ track hprcInsertsV1\ type bigBed 9 +\ visibility hide\ lungAlveoMacro44C Lung Alveolar - Macrophages - Z0000044C bigWig Methylation Atlas: Lung Alveolar - Macrophages - Z0000044C 2 101 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoMacro44C.bw\ color 244,164,96\ longLabel Methylation Atlas: Lung Alveolar - Macrophages - Z0000044C\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 101\ shortLabel Lung Alveolar - Macrophages - Z0000044C\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track lungAlveoMacro44C\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwPanc1Hotspot PANC-1 Ht bigBed 6 + PANC-1 pancreatic carcinoma cell line DNaseI Hotspots from ENCODE 0 101 255 141 85 255 198 170 1 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel PANC-1 Ht\ subGroups view=b_Hot cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ track wgEncodeRegDnaseUwPanc1Hotspot\ type bigBed 6 +\ wgEncodeReg4TxnAllSkinPlus Skin + (all biosamples) bigWig Avg. + strand total RNA-seq level of 18 skin experiments (all biosamples) 0 101 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/skinPlus.bw\ color 127,133,209\ longLabel Avg. + strand total RNA-seq level of 18 skin experiments (all biosamples)\ parent wgEncodeReg4Txn off\ priority 101\ shortLabel Skin + (all biosamples)\ track wgEncodeReg4TxnAllSkinPlus\ type bigWig\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_rev AorticSmsToIL1b_06hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse 0 102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_rev AorticSmsToIL1b_06hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse 1 102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2006hr%2c%20biol_rep3%20%28LK60%29.CNhs13586.12857-137D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 06hr, biol_rep3 (LK60)_CNhs13586_12857-137D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12857-137D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_06hrBr3-\ subGroups sequenceTech=hCAGE category=AoSMC_response_to_IL1b strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b06hrBiolRep3LK60_CNhs13586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12857-137D4\ urlLabel FANTOM5 Details:\ hprcDeletionsV1 Deletions bigBed 9 + Insertions in hg38 = Deletion in the HPRC assemblies 0 102 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcDeletionsV1.bb\ exonArrows off\ filter.querySize 1\ filterLabel.querySize Minimum size of insertion in hg38\ group hprc\ itemRgb on\ labelFields label\ longLabel Insertions in hg38 = Deletion in the HPRC assemblies\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1\ priority 102\ shortLabel Deletions\ track hprcDeletionsV1\ type bigBed 9 +\ visibility hide\ ENCFF138FMV_ENCFF487CTD_ENCFF741NZM_ENCFF626YRZ ENCFF138FMV_ENCFF487CTD_ENCFF741NZM_ENCFF626YRZ bigBed 9 + 5 Transverse colon, female adult (51 years): (1) cCREs 4 102 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF138FMV_ENCFF487CTD_ENCFF741NZM_ENCFF626YRZ.bb\ longLabel Transverse colon, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 158\ shortLabel ENCFF138FMV_ENCFF487CTD_ENCFF741NZM_ENCFF626YRZ\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=transverse_colon-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF138FMV_ENCFF487CTD_ENCFF741NZM_ENCFF626YRZ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF031SQY ENCSR000AUZ Signal bigWig B cell female adult (27 years) EZH2 ENCSR000AUZ signal 2 102 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/e3367766-535c-48eb-bbb7-036c2705d056/ENCFF031SQY.bigWig\ color 254,75,173\ longLabel B cell female adult (27 years) EZH2 ENCSR000AUZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AUZ Signal\ track wgEncodeReg4TfChip_ENCFF031SQY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF255TVO ENCSR000DKN Peak bigBed 5 H54 CTCF peak 4 102 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/368c6fef-a9d5-498c-b95f-d59dc4fac846/ENCFF255TVO.bigBed\ color 0,176,240\ labelFields none\ longLabel H54 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKN Peak\ track wgEncodeReg4Epigenetics_ENCFF255TVO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF304ZHS ENCSR010HIU - strand bigWig Placenta tissue male embryo - strand total RNA-seq signal 2 102 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/c0e9d921-bcbe-4073-b019-7900cd0ab127/ENCFF304ZHS.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR010HIU - strand\ track wgEncodeReg4RnaSeq_ENCFF304ZHS\ type bigWig\ visibility full\ encTfChipPkENCFF687SFB GM12878 E2F4 narrowPeak Transcription Factor ChIP-seq Peaks of E2F4 in GM12878 from ENCODE 3 (ENCFF687SFB) 0 102 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of E2F4 in GM12878 from ENCODE 3 (ENCFF687SFB)\ parent encTfChipPk off\ shortLabel GM12878 E2F4\ subGroups cellType=GM12878 factor=E2F4\ track encTfChipPkENCFF687SFB\ wgEncodeRegDnaseUwHct116Hotspot HCT-116 Ht bigBed 6 + HCT-116 colorectal carcinoma cell line DNaseI Hotspots from ENCODE 0 102 255 150 85 255 202 170 1 0 0 regulation 1 color 255,150,85\ longLabel HCT-116 colorectal carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCT-116 Ht\ subGroups view=b_Hot cellType=HCT-116 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwHct116Hotspot\ type bigBed 6 +\ netHprcGCA_018504055v1 HG02080.pat netAlign GCA_018504055.1 chainHprcGCA_018504055v1 HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chain Nets 1 102 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02080.pat HG02080.alt.pat.f1_v2 (May 2021 GCA_018504055.1_HG02080.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504055.1\ parent hprcChainNetViewnet off\ priority 83\ shortLabel HG02080.pat\ subGroups view=net sample=s083 population=eas subpop=khv hap=pat\ track netHprcGCA_018504055v1\ type netAlign GCA_018504055.1 chainHprcGCA_018504055v1\ lungInterMacro447 Lung Interstitial - Macrophages - Z00000447 bigWig Methylation Atlas: Lung Interstitial - Macrophages - Z00000447 2 102 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungInterMacro447.bw\ color 244,164,96\ longLabel Methylation Atlas: Lung Interstitial - Macrophages - Z00000447\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 102\ shortLabel Lung Interstitial - Macrophages - Z00000447\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track lungInterMacro447\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeReg4TxnAllSkinMinus Skin - (all biosamples) bigWig Avg. - strand total RNA-seq level of 18 skin experiments (all biosamples) 0 102 127 133 209 191 194 232 0 0 0 regulation 0 bigDataUrl /gbdb/hg38/encode4/regulation/organAve/skinMinus.bw\ color 127,133,209\ longLabel Avg. - strand total RNA-seq level of 18 skin experiments (all biosamples)\ negateValues on\ parent wgEncodeReg4Txn off\ priority 102\ shortLabel Skin - (all biosamples)\ track wgEncodeReg4TxnAllSkinMinus\ type bigWig\ ENCFF028FLY_ENCFF886LUE_ENCFF322NLT_ENCFF634JUC ENCFF028FLY_ENCFF886LUE_ENCFF322NLT_ENCFF634JUC bigBed 9 + 5 Sigmoid colon, male adult (54 years): (1) cCREs 4 103 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF028FLY_ENCFF886LUE_ENCFF322NLT_ENCFF634JUC.bb\ longLabel Sigmoid colon, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 137\ shortLabel ENCFF028FLY_ENCFF886LUE_ENCFF322NLT_ENCFF634JUC\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=sigmoid_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF028FLY_ENCFF886LUE_ENCFF322NLT_ENCFF634JUC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF126NLU ENCSR000AVA Peak bigBed 5 H1 CHD7 peaks 4 103 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/490b0825-ce94-4454-91b9-1a3b8e23f67d/ENCFF126NLU.bigBed\ labelFields none\ longLabel H1 CHD7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AVA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF126NLU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF930UCG ENCSR000DKN Signal bigWig H54 CTCF signal 2 103 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c9ec014e-2331-4ff6-bb84-cec93767f79b/ENCFF930UCG.bigWig\ color 0,176,240\ longLabel H54 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKN Signal\ track wgEncodeReg4Epigenetics_ENCFF930UCG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF130HHE ENCSR011VQI + strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years) + strand total RNA-seq signal 2 103 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/aa411f1c-95bf-46a8-ad53-4d1c3932aa71/ENCFF130HHE.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR011VQI + strand\ track wgEncodeReg4RnaSeq_ENCFF130HHE\ type bigWig\ visibility full\ encTfChipPkENCFF412GFI GM12878 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in GM12878 from ENCODE 3 (ENCFF412GFI) 0 103 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of E2F8 in GM12878 from ENCODE 3 (ENCFF412GFI)\ parent encTfChipPk off\ shortLabel GM12878 E2F8\ subGroups cellType=GM12878 factor=E2F8\ track encTfChipPkENCFF412GFI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward 0 103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward 1 103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472825v1 HG03579.mat chain GCA_018472825.1 HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 103 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472825.1\ parent hprcChainNetViewchain off\ priority 31\ shortLabel HG03579.mat\ subGroups view=chain sample=s031 population=afr subpop=msl hap=mat\ track chainHprcGCA_018472825v1\ type chain GCA_018472825.1\ hprcArrInvBedV1 Inversions bigBed 9 + Inversions with respect to hg38 in HPRC assemblies 0 103 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcArrInvV1.bb\ exonArrows off\ itemRgb on\ labelFields label\ longLabel Inversions with respect to hg38 in HPRC assemblies\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1 on\ priority 103\ shortLabel Inversions\ track hprcArrInvBedV1\ type bigBed 9 +\ visibility hide\ lungInterMacro44D Lung Interstitial - Macrophages - Z0000044D bigWig Methylation Atlas: Lung Interstitial - Macrophages - Z0000044D 2 103 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungInterMacro44D.bw\ color 244,164,96\ longLabel Methylation Atlas: Lung Interstitial - Macrophages - Z0000044D\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 103\ shortLabel Lung Interstitial - Macrophages - Z0000044D\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track lungInterMacro44D\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwNhberaHotspot NHBE_RA Ht bigBed 6 + NHBE_RA bronchial epithelium, RA treated DNaseI Hotspots from ENCODE 0 103 255 154 85 255 204 170 1 0 0 regulation 1 color 255,154,85\ longLabel NHBE_RA bronchial epithelium, RA treated DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NHBE_RA Ht\ subGroups view=b_Hot cellType=NHBE_RA treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhberaHotspot\ type bigBed 6 +\ hprcArrDupBedV1 Duplications bigBed 9 + Duplications with respect to hg38 in HPRC assemblies 0 104 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcArrDupV1.bb\ exonArrows off\ itemRgb on\ labelFields label\ longLabel Duplications with respect to hg38 in HPRC assemblies\ maxItems 100000\ mouseOver # genomes in HPRC with duplication: $label\ parent hprcArrV1 on\ priority 104\ shortLabel Duplications\ track hprcArrDupBedV1\ type bigBed 9 +\ visibility hide\ ENCFF405NTZ_ENCFF568IBR_ENCFF427MZX_ENCFF435CDF ENCFF405NTZ_ENCFF568IBR_ENCFF427MZX_ENCFF435CDF bigBed 9 + 5 Transverse colon, male adult (54 years): (1) cCREs 4 104 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF405NTZ_ENCFF568IBR_ENCFF427MZX_ENCFF435CDF.bb\ longLabel Transverse colon, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 161\ shortLabel ENCFF405NTZ_ENCFF568IBR_ENCFF427MZX_ENCFF435CDF\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=transverse_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF405NTZ_ENCFF568IBR_ENCFF427MZX_ENCFF435CDF\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF520FHO ENCSR000AVA Signal bigWig H1 CHD7 ENCSR000AVA signal 2 104 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/236fcc4d-413b-4635-ad61-281f2a20fe87/ENCFF520FHO.bigWig\ color 118,158,101\ longLabel H1 CHD7 ENCSR000AVA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AVA Signal\ track wgEncodeReg4TfChip_ENCFF520FHO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF083HVS ENCSR000DKP Peak bigBed 5 GM10248 CTCF peak 4 104 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a52f4b29-465e-4be0-baa3-c58c1f5aec55/ENCFF083HVS.bigBed\ color 0,176,240\ labelFields none\ longLabel GM10248 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKP Peak\ track wgEncodeReg4Epigenetics_ENCFF083HVS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF981OYU ENCSR011VQI - strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years) - strand total RNA-seq signal 2 104 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/099c980b-4d95-40ab-9a83-d079d14cee14/ENCFF981OYU.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (48 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR011VQI - strand\ track wgEncodeReg4RnaSeq_ENCFF981OYU\ type bigWig\ visibility full\ encTfChipPkENCFF035GFS GM12878 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in GM12878 from ENCODE 3 (ENCFF035GFS) 0 104 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of E4F1 in GM12878 from ENCODE 3 (ENCFF035GFS)\ parent encTfChipPk off\ shortLabel GM12878 E4F1\ subGroups cellType=GM12878 factor=E4F1\ track encTfChipPkENCFF035GFS\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse 0 104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse 1 104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep1%20%28UH-1%29.CNhs13694.13364-143F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep1 (UH-1)_CNhs13694_13364-143F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13364-143F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep1UH1_CNhs13694_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13364-143F7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffHotspot HFF Ht bigBed 6 + HFF foreskin fibroblast DNaseI Hotspots from ENCODE 0 104 255 163 85 255 209 170 1 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HFF Ht\ subGroups view=b_Hot cellType=HFF treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffHotspot\ type bigBed 6 +\ netHprcGCA_018472825v1 HG03579.mat netAlign GCA_018472825.1 chainHprcGCA_018472825v1 HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chain Nets 1 104 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03579.mat HG03579.pri.mat.f1_v2 (May 2021 GCA_018472825.1_HG03579.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472825.1\ parent hprcChainNetViewnet off\ priority 31\ shortLabel HG03579.mat\ subGroups view=net sample=s031 population=afr subpop=msl hap=mat\ track netHprcGCA_018472825v1\ type netAlign GCA_018472825.1 chainHprcGCA_018472825v1\ lungInterMacro44E Lung Interstitial - Macrophages - Z0000044E bigWig Methylation Atlas: Lung Interstitial - Macrophages - Z0000044E 2 104 244 164 96 249 209 175 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungInterMacro44E.bw\ color 244,164,96\ longLabel Methylation Atlas: Lung Interstitial - Macrophages - Z0000044E\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 104\ shortLabel Lung Interstitial - Macrophages - Z0000044E\ subGroups cellType=Blood-Mono-Macro dataType=Replicate\ track lungInterMacro44E\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ bloodGranulMerged Blood Granulocytes Merged bigWig Methylation Atlas: Blood Granulocytes Merged Samples 2 105 255 99 71 255 177 163 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodGranulMerged.bw\ color 255,99,71\ longLabel Methylation Atlas: Blood Granulocytes Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 105\ shortLabel Blood Granulocytes Merged\ subGroups cellType=Blood-Granul dataType=Merged\ track bloodGranulMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF841ILF_ENCFF173NSX_ENCFF004SRJ_ENCFF546ZNQ ENCFF841ILF_ENCFF173NSX_ENCFF004SRJ_ENCFF546ZNQ bigBed 9 + 5 Colonic mucosa, female adult (41 years): (1) cCREs 4 105 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF841ILF_ENCFF173NSX_ENCFF004SRJ_ENCFF546ZNQ.bb\ longLabel Colonic mucosa, female adult (41 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 22\ shortLabel ENCFF841ILF_ENCFF173NSX_ENCFF004SRJ_ENCFF546ZNQ\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=colonic_mucosa-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCcres\ track ENCFF841ILF_ENCFF173NSX_ENCFF004SRJ_ENCFF546ZNQ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF353UJQ ENCSR000AVB Peak bigBed 5 H1 HDAC2 peaks 4 105 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/c455a98b-751a-49c7-9169-24f05bcba6cb/ENCFF353UJQ.bigBed\ labelFields none\ longLabel H1 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AVB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF353UJQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF775HGO ENCSR000DKP Signal bigWig GM10248 CTCF signal 2 105 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d508f3c4-3abb-4cdf-aa42-269eaf7a5544/ENCFF775HGO.bigWig\ color 0,176,240\ longLabel GM10248 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKP Signal\ track wgEncodeReg4Epigenetics_ENCFF775HGO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF738NMC ENCSR012UFU + strand bigWig Dorsolateral prefrontal cortex tissue male adult (86 years) + strand total RNA-seq signal 2 105 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/23ed74c4-d5ce-45f9-88dc-7f6724c31ffb/ENCFF738NMC.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (86 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR012UFU + strand\ track wgEncodeReg4RnaSeq_ENCFF738NMC\ type bigWig\ visibility full\ encTfChipPkENCFF249SVT GM12878 EBF1 narrowPeak Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF249SVT) 0 105 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EBF1 in GM12878 from ENCODE 3 (ENCFF249SVT)\ parent encTfChipPk off\ shortLabel GM12878 EBF1\ subGroups cellType=GM12878 factor=EBF1\ track encTfChipPkENCFF249SVT\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward 0 105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward 1 105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffmycHotspot HFF-Myc Ht bigBed 6 + HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Hotspots from ENCODE 0 105 255 165 85 255 210 170 1 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HFF-Myc Ht\ subGroups view=b_Hot cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffmycHotspot\ type bigBed 6 +\ chainHprcGCA_018472855v1 HG03453.mat chain GCA_018472855.1 HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 105 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472855.1\ parent hprcChainNetViewchain off\ priority 33\ shortLabel HG03453.mat\ subGroups view=chain sample=s033 population=afr subpop=msl hap=mat\ track chainHprcGCA_018472855v1\ type chain GCA_018472855.1\ hprcDoubleV1 Other Rearrangements bigBed 9 + Other Rearrangements: Unalignable sequences in both assemblies (inversions, partial transpositions) 0 105 0 0 0 100 50 0 0 0 0 hprc 1 bigDataUrl /gbdb/hg38/hprcArrV1/hprcDoubleV1.bb\ exonArrows off\ group hprc\ itemRgb on\ labelFields label\ longLabel Other Rearrangements: Unalignable sequences in both assemblies (inversions, partial transpositions)\ maxItems 100000\ mouseOverField _mouseover\ parent hprcArrV1\ priority 105\ shortLabel Other Rearrangements\ track hprcDoubleV1\ type bigBed 9 +\ visibility hide\ bloodGran0TZ Blood - Granulocytes - Z000000TZ bigWig Methylation Atlas: Blood - Granulocytes - Z000000TZ 2 106 255 99 71 255 177 163 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodGran0TZ.bw\ color 255,99,71\ longLabel Methylation Atlas: Blood - Granulocytes - Z000000TZ\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 106\ shortLabel Blood - Granulocytes - Z000000TZ\ subGroups cellType=Blood-Granul dataType=Replicate\ track bloodGran0TZ\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF291LZE_ENCFF339CRV_ENCFF318ECM_ENCFF493XMW ENCFF291LZE_ENCFF339CRV_ENCFF318ECM_ENCFF493XMW bigBed 9 + 5 Transverse colon, female adult (53 years): (1) cCREs 4 106 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF291LZE_ENCFF339CRV_ENCFF318ECM_ENCFF493XMW.bb\ longLabel Transverse colon, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 159\ shortLabel ENCFF291LZE_ENCFF339CRV_ENCFF318ECM_ENCFF493XMW\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=transverse_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF291LZE_ENCFF339CRV_ENCFF318ECM_ENCFF493XMW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF395MPO ENCSR000AVB Signal bigWig H1 HDAC2 ENCSR000AVB signal 2 106 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/172109a4-5405-423d-8e52-c40a35f35172/ENCFF395MPO.bigWig\ color 118,158,101\ longLabel H1 HDAC2 ENCSR000AVB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AVB Signal\ track wgEncodeReg4TfChip_ENCFF395MPO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF241YYF ENCSR000DKR Peak bigBed 5 GM10266 CTCF peak 4 106 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/47bfb0b9-9516-4044-9d2d-dde64ee0206d/ENCFF241YYF.bigBed\ color 0,176,240\ labelFields none\ longLabel GM10266 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKR Peak\ track wgEncodeReg4Epigenetics_ENCFF241YYF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF148EZJ ENCSR012UFU - strand bigWig Dorsolateral prefrontal cortex tissue male adult (86 years) - strand total RNA-seq signal 2 106 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/1b2423a8-b87d-4fe1-a9e2-dfa2f22a9690/ENCFF148EZJ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (86 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR012UFU - strand\ track wgEncodeReg4RnaSeq_ENCFF148EZJ\ type bigWig\ visibility full\ encTfChipPkENCFF023ALY GM12878 EED narrowPeak Transcription Factor ChIP-seq Peaks of EED in GM12878 from ENCODE 3 (ENCFF023ALY) 0 106 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EED in GM12878 from ENCODE 3 (ENCFF023ALY)\ parent encTfChipPk off\ shortLabel GM12878 EED\ subGroups cellType=GM12878 factor=EED\ track encTfChipPkENCFF023ALY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse 0 106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse 1 106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep2%20%28UH-2%29.CNhs13695.13365-143F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep2 (UH-2)_CNhs13695_13365-143F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13365-143F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep2UH2_CNhs13695_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13365-143F8\ urlLabel FANTOM5 Details:\ netHprcGCA_018472855v1 HG03453.mat netAlign GCA_018472855.1 chainHprcGCA_018472855v1 HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chain Nets 1 106 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03453.mat HG03453.pri.mat.f1_v2 (May 2021 GCA_018472855.1_HG03453.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472855.1\ parent hprcChainNetViewnet off\ priority 33\ shortLabel HG03453.mat\ subGroups view=net sample=s033 population=afr subpop=msl hap=mat\ track netHprcGCA_018472855v1\ type netAlign GCA_018472855.1 chainHprcGCA_018472855v1\ wgEncodeRegDnaseUwNt2d1Hotspot NT2-D1 Ht bigBed 6 + NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Hotspots from ENCODE 0 106 255 173 85 255 214 170 1 0 0 regulation 1 color 255,173,85\ longLabel NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NT2-D1 Ht\ subGroups view=b_Hot cellType=NT2-D1 treatment=n_a tissue=testis cancer=cancer\ track wgEncodeRegDnaseUwNt2d1Hotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwBjHotspot BJ Ht bigBed 6 + BJ foreskin fibroblast cell line DNaseI Hotspots from ENCODE 0 107 255 184 85 255 219 170 1 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel BJ Ht\ subGroups view=b_Hot cellType=BJ treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwBjHotspot\ type bigBed 6 +\ bloodGran0UD Blood - Granulocytes - Z000000UD bigWig Methylation Atlas: Blood - Granulocytes - Z000000UD 2 107 255 99 71 255 177 163 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodGran0UD.bw\ color 255,99,71\ longLabel Methylation Atlas: Blood - Granulocytes - Z000000UD\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 107\ shortLabel Blood - Granulocytes - Z000000UD\ subGroups cellType=Blood-Granul dataType=Replicate\ track bloodGran0UD\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF299OOV_ENCFF237VMY_ENCFF111DLN_ENCFF154FOF ENCFF299OOV_ENCFF237VMY_ENCFF111DLN_ENCFF154FOF bigBed 9 + 5 Sigmoid colon, female adult (53 years): (1) cCREs 4 107 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF299OOV_ENCFF237VMY_ENCFF111DLN_ENCFF154FOF.bb\ longLabel Sigmoid colon, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 136\ shortLabel ENCFF299OOV_ENCFF237VMY_ENCFF111DLN_ENCFF154FOF\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=sigmoid_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF299OOV_ENCFF237VMY_ENCFF111DLN_ENCFF154FOF\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF078LED ENCSR000AVC Peak bigBed 5 H1 KDM4A peaks 4 107 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/773ee3dd-f688-4a7c-9b32-4f2c661282b2/ENCFF078LED.bigBed\ labelFields none\ longLabel H1 KDM4A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AVC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF078LED\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF156BQJ ENCSR000DKR Signal bigWig GM10266 CTCF signal 2 107 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d1e78efa-6d90-49c5-be68-77f32ccbfef7/ENCFF156BQJ.bigWig\ color 0,176,240\ longLabel GM10266 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKR Signal\ track wgEncodeReg4Epigenetics_ENCFF156BQJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF765OZR ENCSR013HWB + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal 2 107 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/2fcf5690-7a8e-4003-ad85-0c5aa80d28b5/ENCFF765OZR.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR013HWB + strand\ track wgEncodeReg4RnaSeq_ENCFF765OZR\ type bigWig\ visibility full\ encTfChipPkENCFF341EJT GM12878 EGR1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in GM12878 from ENCODE 3 (ENCFF341EJT) 0 107 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in GM12878 from ENCODE 3 (ENCFF341EJT)\ parent encTfChipPk off\ shortLabel GM12878 EGR1\ subGroups cellType=GM12878 factor=EGR1\ track encTfChipPkENCFF341EJT\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day00Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward 0 107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day00Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward 1 107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018503525v1 HG03486.mat chain GCA_018503525.1 HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 107 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503525.1\ parent hprcChainNetViewchain off\ priority 36\ shortLabel HG03486.mat\ subGroups view=chain sample=s036 population=afr subpop=msl hap=mat\ track chainHprcGCA_018503525v1\ type chain GCA_018503525.1\ wgEncodeRegDnaseUwAg09309Hotspot AG09309 Ht bigBed 6 + AG09309 skin fibroblast DNaseI Hotspots from ENCODE 0 108 255 186 85 255 220 170 1 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG09309 Ht\ subGroups view=b_Hot cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg09309Hotspot\ type bigBed 6 +\ bloodGran0UT Blood - Granulocytes - Z000000UT bigWig Methylation Atlas: Blood - Granulocytes - Z000000UT 2 108 255 99 71 255 177 163 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bloodGran0UT.bw\ color 255,99,71\ longLabel Methylation Atlas: Blood - Granulocytes - Z000000UT\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 108\ shortLabel Blood - Granulocytes - Z000000UT\ subGroups cellType=Blood-Granul dataType=Replicate\ track bloodGran0UT\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF753MXL_ENCFF252OBP_ENCFF532ZGB_ENCFF646EZE ENCFF753MXL_ENCFF252OBP_ENCFF532ZGB_ENCFF646EZE bigBed 9 + 5 Transverse colon, male adult (37 years): (1) cCREs 4 108 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF753MXL_ENCFF252OBP_ENCFF532ZGB_ENCFF646EZE.bb\ longLabel Transverse colon, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 160\ shortLabel ENCFF753MXL_ENCFF252OBP_ENCFF532ZGB_ENCFF646EZE\ subGroups organ=large_intestine view=cCREs_view simpleBiosample=transverse_colon-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF753MXL_ENCFF252OBP_ENCFF532ZGB_ENCFF646EZE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF826LWF ENCSR000AVC Signal bigWig H1 KDM4A ENCSR000AVC signal 2 108 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/74999492-215a-48e2-9d65-069c436431e3/ENCFF826LWF.bigWig\ color 118,158,101\ longLabel H1 KDM4A ENCSR000AVC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000AVC Signal\ track wgEncodeReg4TfChip_ENCFF826LWF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF896BYT ENCSR000DKZ Peak bigBed 5 GM13976 CTCF peak 4 108 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3a880aeb-f609-4a3e-ac88-12b1bfe7db5a/ENCFF896BYT.bigBed\ color 0,176,240\ labelFields none\ longLabel GM13976 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKZ Peak\ track wgEncodeReg4Epigenetics_ENCFF896BYT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF087NIN ENCSR013HWB - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal 2 108 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/f8089674-0e48-4010-9ee4-0d0d8095e0fb/ENCFF087NIN.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR013HWB - strand\ track wgEncodeReg4RnaSeq_ENCFF087NIN\ type bigWig\ visibility full\ encTfChipPkENCFF948CPI GM12878 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in GM12878 from ENCODE 3 (ENCFF948CPI) 0 108 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in GM12878 from ENCODE 3 (ENCFF948CPI)\ parent encTfChipPk off\ shortLabel GM12878 ELF1\ subGroups cellType=GM12878 factor=ELF1\ track encTfChipPkENCFF948CPI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_rev Hes3-gfpCardiomyocyticInduction_Day00Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse 0 108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_rev Hes3-gfpCardiomyocyticInduction_Day00Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse 1 108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day00%2c%20biol_rep3%20%28UH-3%29.CNhs13738.13366-143F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day00, biol_rep3 (UH-3)_CNhs13738_13366-143F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13366-143F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay00BiolRep3UH3_CNhs13738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13366-143F9\ urlLabel FANTOM5 Details:\ netHprcGCA_018503525v1 HG03486.mat netAlign GCA_018503525.1 chainHprcGCA_018503525v1 HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chain Nets 1 108 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03486.mat HG03486.pri.mat.f1_v2 (May 2021 GCA_018503525.1_HG03486.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503525.1\ parent hprcChainNetViewnet off\ priority 36\ shortLabel HG03486.mat\ subGroups view=net sample=s036 population=afr subpop=msl hap=mat\ track netHprcGCA_018503525v1\ type netAlign GCA_018503525.1 chainHprcGCA_018503525v1\ ENCFF546MZK_ENCFF732PJK_ENCFF795ONN_ENCFF357NFO ENCFF546MZK_ENCFF732PJK_ENCFF795ONN_ENCFF357NFO bigBed 9 + 5 HepG2: (1) cCREs 4 109 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF546MZK_ENCFF732PJK_ENCFF795ONN_ENCFF357NFO.bb\ longLabel HepG2: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 54\ shortLabel ENCFF546MZK_ENCFF732PJK_ENCFF795ONN_ENCFF357NFO\ subGroups organ=liver view=cCREs_view simpleBiosample=HepG2 biosampleType=cell_line donor=ENCDO000AAC dataType=typeCcres\ track ENCFF546MZK_ENCFF732PJK_ENCFF795ONN_ENCFF357NFO\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF349WGE ENCSR000BGA Peak bigBed 5 PFSK-1 FOXP2 peaks 4 109 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/01/05/1a3fd9e1-30de-438f-83ad-50281ecd9e43/ENCFF349WGE.bigBed\ labelFields none\ longLabel PFSK-1 FOXP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF349WGE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF199JKB ENCSR000DKZ Signal bigWig GM13976 CTCF signal 2 109 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7e3ea8a3-10dd-4163-90bc-e4671175e377/ENCFF199JKB.bigWig\ color 0,176,240\ longLabel GM13976 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DKZ Signal\ track wgEncodeReg4Epigenetics_ENCFF199JKB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF952CKD ENCSR015PUN + strand bigWig Right ventricle myocardium inferior tissue male adult (60 years) + strand total RNA-seq signal 2 109 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/410cb5c5-e889-432c-b219-22961de45a50/ENCFF952CKD.bigWig\ color 116,50,165\ longLabel Right ventricle myocardium inferior tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR015PUN + strand\ track wgEncodeReg4RnaSeq_ENCFF952CKD\ type bigWig\ visibility full\ erythProgMerged Erythrocyte Progenitors Merged bigWig Methylation Atlas: Erythrocyte Progenitors Merged Samples 2 109 205 51 51 230 153 153 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/erythProgMerged.bw\ color 205,51,51\ longLabel Methylation Atlas: Erythrocyte Progenitors Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 109\ shortLabel Erythrocyte Progenitors Merged\ subGroups cellType=Eryth-prog dataType=Merged\ track erythProgMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF432AQP GM12878 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in GM12878 from ENCODE 3 (ENCFF432AQP) 0 109 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in GM12878 from ENCODE 3 (ENCFF432AQP)\ parent encTfChipPk off\ shortLabel GM12878 ELK1\ subGroups cellType=GM12878 factor=ELK1\ track encTfChipPkENCFF432AQP\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward 0 109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward 1 109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506165v1 HG03098.mat chain GCA_018506165.1 HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 109 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506165.1\ parent hprcChainNetViewchain off\ priority 38\ shortLabel HG03098.mat\ subGroups view=chain sample=s038 population=afr subpop=msl hap=mat\ track chainHprcGCA_018506165v1\ type chain GCA_018506165.1\ wgEncodeRegDnaseUwHnpcepicHotspot HNPCEpiC Ht bigBed 6 + HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Hotspots from ENCODE 0 109 255 188 85 255 221 170 1 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HNPCEpiC Ht\ subGroups view=b_Hot cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHnpcepicHotspot\ type bigBed 6 +\ boneMarrowErythProg0RF Bone marrow - Erythrocyte progenitors - Z000000RF bigWig Methylation Atlas: Bone marrow - Erythrocyte progenitors - Z000000RF 2 110 205 51 51 230 153 153 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/boneMarrowErythProg0RF.bw\ color 205,51,51\ longLabel Methylation Atlas: Bone marrow - Erythrocyte progenitors - Z000000RF\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 110\ shortLabel Bone marrow - Erythrocyte progenitors - Z000000RF\ subGroups cellType=Eryth-prog dataType=Replicate\ track boneMarrowErythProg0RF\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF902EEH_ENCFF137IUT_ENCFF347LDC_ENCFF491FMJ ENCFF902EEH_ENCFF137IUT_ENCFF347LDC_ENCFF491FMJ bigBed 9 + 5 Hepatocyte, female embryo (5 days): (1) cCREs 4 110 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF902EEH_ENCFF137IUT_ENCFF347LDC_ENCFF491FMJ.bb\ longLabel Hepatocyte, female embryo (5 days): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 53\ shortLabel ENCFF902EEH_ENCFF137IUT_ENCFF347LDC_ENCFF491FMJ\ subGroups organ=liver view=cCREs_view simpleBiosample=hepatocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF902EEH_ENCFF137IUT_ENCFF347LDC_ENCFF491FMJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF978PPO ENCSR000BGA Signal bigWig PFSK-1 FOXP2 ENCSR000BGA signal 2 110 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2017/01/05/70b7a34f-1699-40a5-aaad-6101b071c439/ENCFF978PPO.bigWig\ color 155,155,18\ longLabel PFSK-1 FOXP2 ENCSR000BGA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGA Signal\ track wgEncodeReg4TfChip_ENCFF978PPO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF528ESQ ENCSR000DLB Peak bigBed 5 GM13977 CTCF peak 4 110 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0fe47a61-f75c-46ca-b60c-c6daa4650d2b/ENCFF528ESQ.bigBed\ color 0,176,240\ labelFields none\ longLabel GM13977 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DLB Peak\ track wgEncodeReg4Epigenetics_ENCFF528ESQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF811NYJ ENCSR015PUN - strand bigWig Right ventricle myocardium inferior tissue male adult (60 years) - strand total RNA-seq signal 2 110 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/b3c64eea-bdf0-48da-b8c9-54e5500cfe09/ENCFF811NYJ.bigWig\ color 116,50,165\ longLabel Right ventricle myocardium inferior tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR015PUN - strand\ track wgEncodeReg4RnaSeq_ENCFF811NYJ\ type bigWig\ visibility full\ encTfChipPkENCFF865UDD GM12878 EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF865UDD) 0 110 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF865UDD)\ parent encTfChipPk off\ shortLabel GM12878 EP300 1\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF865UDD\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse 0 110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse 1 110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep1.CNhs13653.13328-143B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep1_CNhs13653_13328-143B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13328-143B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep1_CNhs13653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13328-143B7\ urlLabel FANTOM5 Details:\ netHprcGCA_018506165v1 HG03098.mat netAlign GCA_018506165.1 chainHprcGCA_018506165v1 HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chain Nets 1 110 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03098.mat HG03098.pri.mat.f1_v2 (May 2021 GCA_018506165.1_HG03098.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506165.1\ parent hprcChainNetViewnet off\ priority 38\ shortLabel HG03098.mat\ subGroups view=net sample=s038 population=afr subpop=msl hap=mat\ track netHprcGCA_018506165v1\ type netAlign GCA_018506165.1 chainHprcGCA_018506165v1\ wgEncodeRegDnaseUwWi38Hotspot WI-38 Ht bigBed 6 + WI-38 embryonic lung fibroblast cell line DNaseI Hotspots from ENCODE 0 110 255 192 85 255 223 170 1 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel WI-38 Ht\ subGroups view=b_Hot cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi38Hotspot\ type bigBed 6 +\ boneMarrowErythProg0RH Bone marrow - Erythrocyte progenitors - Z000000RH bigWig Methylation Atlas: Bone marrow - Erythrocyte progenitors - Z000000RH 2 111 205 51 51 230 153 153 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/boneMarrowErythProg0RH.bw\ color 205,51,51\ longLabel Methylation Atlas: Bone marrow - Erythrocyte progenitors - Z000000RH\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 111\ shortLabel Bone marrow - Erythrocyte progenitors - Z000000RH\ subGroups cellType=Eryth-prog dataType=Replicate\ track boneMarrowErythProg0RH\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF020EPF_ENCFF917LFF_ENCFF764VSN_ENCFF005YBS ENCFF020EPF_ENCFF917LFF_ENCFF764VSN_ENCFF005YBS bigBed 9 + 5 Right lobe of liver, female adult (53 years): (1) cCREs 4 111 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF020EPF_ENCFF917LFF_ENCFF764VSN_ENCFF005YBS.bb\ longLabel Right lobe of liver, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view on\ priority 135\ shortLabel ENCFF020EPF_ENCFF917LFF_ENCFF764VSN_ENCFF005YBS\ subGroups organ=liver view=cCREs_view simpleBiosample=right_lobe_of_liver-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF020EPF_ENCFF917LFF_ENCFF764VSN_ENCFF005YBS\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF865YOS ENCSR000BGB Peak bigBed 5 SK-N-MC FOXP2 peaks 4 111 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/01/05/a2116609-b81d-4d2d-8b61-899e98ad45f4/ENCFF865YOS.bigBed\ labelFields none\ longLabel SK-N-MC FOXP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF865YOS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF233CKI ENCSR000DLB Signal bigWig GM13977 CTCF signal 2 111 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a2440a03-b143-4886-a0a7-8af56410411c/ENCFF233CKI.bigWig\ color 0,176,240\ longLabel GM13977 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DLB Signal\ track wgEncodeReg4Epigenetics_ENCFF233CKI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF520VBQ ENCSR015SAL + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 111 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/adcab8ef-74eb-48a1-8656-c945881577db/ENCFF520VBQ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR015SAL + strand\ track wgEncodeReg4RnaSeq_ENCFF520VBQ\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm04503Hotspot GM04503 Ht bigBed 6 + GM04503 skin fibroblast DNaseI Hotspots from ENCODE 0 111 255 200 85 255 227 170 1 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM04503 Ht\ subGroups view=b_Hot cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04503Hotspot\ type bigBed 6 +\ encTfChipPkENCFF080HJX GM12878 EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF080HJX) 0 111 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF080HJX)\ parent encTfChipPk off\ shortLabel GM12878 EP300 2\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF080HJX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward 0 111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward 1 111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472835v1 HG03579.pat chain GCA_018472835.1 HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 111 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472835.1\ parent hprcChainNetViewchain off\ priority 32\ shortLabel HG03579.pat\ subGroups view=chain sample=s032 population=afr subpop=msl hap=pat\ track chainHprcGCA_018472835v1\ type chain GCA_018472835.1\ boneMarrowErythProg0RK Bone marrow - Erythrocyte progenitors - Z000000RK bigWig Methylation Atlas: Bone marrow - Erythrocyte progenitors - Z000000RK 2 112 205 51 51 230 153 153 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/boneMarrowErythProg0RK.bw\ color 205,51,51\ longLabel Methylation Atlas: Bone marrow - Erythrocyte progenitors - Z000000RK\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 112\ shortLabel Bone marrow - Erythrocyte progenitors - Z000000RK\ subGroups cellType=Eryth-prog dataType=Replicate\ track boneMarrowErythProg0RK\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF971HXR_ENCFF376ZIM_ENCFF699OAR_ENCFF105FHL ENCFF971HXR_ENCFF376ZIM_ENCFF699OAR_ENCFF105FHL bigBed 9 + 5 IMR-90: (1) cCREs 4 112 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF971HXR_ENCFF376ZIM_ENCFF699OAR_ENCFF105FHL.bb\ longLabel IMR-90: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 57\ shortLabel ENCFF971HXR_ENCFF376ZIM_ENCFF699OAR_ENCFF105FHL\ subGroups organ=lung view=cCREs_view simpleBiosample=IMR-90 biosampleType=cell_line donor=ENCDO000AAX dataType=typeCcres\ track ENCFF971HXR_ENCFF376ZIM_ENCFF699OAR_ENCFF105FHL\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF416LRH ENCSR000BGB Signal bigWig SK-N-MC FOXP2 ENCSR000BGB signal 2 112 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2017/01/05/17a45e65-6abf-4f0c-99e2-ff38dde1598e/ENCFF416LRH.bigWig\ color 155,155,18\ longLabel SK-N-MC FOXP2 ENCSR000BGB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGB Signal\ track wgEncodeReg4TfChip_ENCFF416LRH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF217HWJ ENCSR000DLG Peak bigBed 5 GM20000 CTCF peak 4 112 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/e8abfba6-b0dd-4872-ab4c-0691adc5a48f/ENCFF217HWJ.bigBed\ color 0,176,240\ labelFields none\ longLabel GM20000 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DLG Peak\ track wgEncodeReg4Epigenetics_ENCFF217HWJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF332GTA ENCSR015SAL - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 112 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/5cbb5d01-b410-4678-bcc2-9c06f361cc3b/ENCFF332GTA.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR015SAL - strand\ track wgEncodeReg4RnaSeq_ENCFF332GTA\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm04504Hotspot GM04504 Ht bigBed 6 + GM04504 skin fibroblast DNaseI Hotspots from ENCODE 0 112 255 204 85 255 229 170 1 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM04504 Ht\ subGroups view=b_Hot cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04504Hotspot\ type bigBed 6 +\ encTfChipPkENCFF510FUM GM12878 EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF510FUM) 0 112 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in GM12878 from ENCODE 3 (ENCFF510FUM)\ parent encTfChipPk off\ shortLabel GM12878 EP300 3\ subGroups cellType=GM12878 factor=EP300\ track encTfChipPkENCFF510FUM\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse 0 112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse 1 112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep2.CNhs13712.13340-143D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep2_CNhs13712_13340-143D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13340-143D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep2_CNhs13712_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13340-143D1\ urlLabel FANTOM5 Details:\ netHprcGCA_018472835v1 HG03579.pat netAlign GCA_018472835.1 chainHprcGCA_018472835v1 HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chain Nets 1 112 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03579.pat HG03579.alt.pat.f1_v2 (May 2021 GCA_018472835.1_HG03579.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472835.1\ parent hprcChainNetViewnet off\ priority 32\ shortLabel HG03579.pat\ subGroups view=net sample=s032 population=afr subpop=msl hap=pat\ track netHprcGCA_018472835v1\ type netAlign GCA_018472835.1 chainHprcGCA_018472835v1\ ENCFF153DHV_ENCFF573ZFG_ENCFF389RGR_ENCFF766VDL ENCFF153DHV_ENCFF573ZFG_ENCFF389RGR_ENCFF766VDL bigBed 9 + 5 AG04450: (1) cCREs 4 113 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF153DHV_ENCFF573ZFG_ENCFF389RGR_ENCFF766VDL.bb\ longLabel AG04450: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 7\ shortLabel ENCFF153DHV_ENCFF573ZFG_ENCFF389RGR_ENCFF766VDL\ subGroups organ=lung view=cCREs_view simpleBiosample=AG04450 biosampleType=cell_line donor=ENCDO001AAA dataType=typeCcres\ track ENCFF153DHV_ENCFF573ZFG_ENCFF389RGR_ENCFF766VDL\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF521FXC ENCSR000BGD Peak bigBed 5 GM12878 POLR2A peaks 4 113 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/cc65a555-70d6-4772-bf50-5d395048f8f3/ENCFF521FXC.bigBed\ labelFields none\ longLabel GM12878 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF521FXC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF795QXM ENCSR000DLG Signal bigWig GM20000 CTCF signal 2 113 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c2d8052e-31ee-4818-a184-540917ca675a/ENCFF795QXM.bigWig\ color 0,176,240\ longLabel GM20000 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DLG Signal\ track wgEncodeReg4Epigenetics_ENCFF795QXM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF233HJC ENCSR019ICB + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 113 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/4743022a-74c6-480b-8bc6-14f8f0f877d3/ENCFF233HJC.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR019ICB + strand\ track wgEncodeReg4RnaSeq_ENCFF233HJC\ type bigWig\ visibility full\ encTfChipPkENCFF722LJP GM12878 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in GM12878 from ENCODE 3 (ENCFF722LJP) 0 113 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in GM12878 from ENCODE 3 (ENCFF722LJP)\ parent encTfChipPk off\ shortLabel GM12878 ESRRA\ subGroups cellType=GM12878 factor=ESRRA\ track encTfChipPkENCFF722LJP\ headNeckEpMerged Head Neck Epithelium Merged bigWig Methylation Atlas: Head Neck Epithelium Merged Samples 2 113 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/headNeckEpMerged.bw\ color 0,206,209\ longLabel Methylation Atlas: Head Neck Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 113\ shortLabel Head Neck Epithelium Merged\ subGroups cellType=Head-Neck-Ep dataType=Merged\ track headNeckEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day01Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward 0 113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day01Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward 1 113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018473305v1 HG03453.pat chain GCA_018473305.1 HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 113 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018473305.1\ parent hprcChainNetViewchain off\ priority 34\ shortLabel HG03453.pat\ subGroups view=chain sample=s034 population=afr subpop=msl hap=pat\ track chainHprcGCA_018473305v1\ type chain GCA_018473305.1\ wgEncodeRegDnaseUwNhlfHotspot NHLF Ht bigBed 6 + NHLF lung fibroblast DNaseI Hotspots from ENCODE 0 113 255 209 85 255 232 170 1 0 0 regulation 1 color 255,209,85\ longLabel NHLF lung fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel NHLF Ht\ subGroups view=b_Hot cellType=NHLF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhlfHotspot\ type bigBed 6 +\ ENCFF623TJB_ENCFF465MDM_ENCFF907RYE_ENCFF936QRH ENCFF623TJB_ENCFF465MDM_ENCFF907RYE_ENCFF936QRH bigBed 9 + 5 PC-9: (1) cCREs 4 114 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF623TJB_ENCFF465MDM_ENCFF907RYE_ENCFF936QRH.bb\ longLabel PC-9: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 126\ shortLabel ENCFF623TJB_ENCFF465MDM_ENCFF907RYE_ENCFF936QRH\ subGroups organ=lung view=cCREs_view simpleBiosample=PC-9 biosampleType=cell_line donor=ENCDO647UHQ dataType=typeCcres\ track ENCFF623TJB_ENCFF465MDM_ENCFF907RYE_ENCFF936QRH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF203NVD ENCSR000BGD Signal bigWig GM12878 POLR2A ENCSR000BGD signal 2 114 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/94fb8e6e-a133-430c-9982-567d83d063c1/ENCFF203NVD.bigWig\ color 254,75,173\ longLabel GM12878 POLR2A ENCSR000BGD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGD Signal\ track wgEncodeReg4TfChip_ENCFF203NVD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF455OQM ENCSR000DLW Peak bigBed 5 Endothelial cell of umbilical vein newborn CTCF peak 4 114 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/473a8ac0-e6f7-472d-ba86-b45763f4dce0/ENCFF455OQM.bigBed\ color 0,176,240\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DLW Peak\ track wgEncodeReg4Epigenetics_ENCFF455OQM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF697SGZ ENCSR019ICB - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 114 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/cf02427c-6857-464d-b563-0454123caefd/ENCFF697SGZ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR019ICB - strand\ track wgEncodeReg4RnaSeq_ENCFF697SGZ\ type bigWig\ visibility full\ esophEp0PZ Esophagus - Epithelial - Z000000PZ bigWig Methylation Atlas: Esophagus - Epithelial - Z000000PZ 2 114 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/esophEp0PZ.bw\ color 0,206,209\ longLabel Methylation Atlas: Esophagus - Epithelial - Z000000PZ\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 114\ shortLabel Esophagus - Epithelial - Z000000PZ\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track esophEp0PZ\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF980VOD GM12878 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in GM12878 from ENCODE 3 (ENCFF980VOD) 0 114 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in GM12878 from ENCODE 3 (ENCFF980VOD)\ parent encTfChipPk off\ shortLabel GM12878 ETS1\ subGroups cellType=GM12878 factor=ETS1\ track encTfChipPkENCFF980VOD\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_rev Hes3-gfpCardiomyocyticInduction_Day01Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse 0 114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_rev Hes3-gfpCardiomyocyticInduction_Day01Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse 1 114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day01%2c%20biol_rep3.CNhs13725.13352-143E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day01, biol_rep3_CNhs13725_13352-143E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13352-143E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay01BiolRep3_CNhs13725_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13352-143E4\ urlLabel FANTOM5 Details:\ netHprcGCA_018473305v1 HG03453.pat netAlign GCA_018473305.1 chainHprcGCA_018473305v1 HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chain Nets 1 114 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03453.pat HG03453.alt.pat.f1_v2 (May 2021 GCA_018473305.1_HG03453.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018473305.1\ parent hprcChainNetViewnet off\ priority 34\ shortLabel HG03453.pat\ subGroups view=net sample=s034 population=afr subpop=msl hap=pat\ track netHprcGCA_018473305v1\ type netAlign GCA_018473305.1 chainHprcGCA_018473305v1\ wgEncodeRegDnaseUwNhaHotspot NH-A Ht bigBed 6 + NH-A astrocyte DNaseI Hotspots from ENCODE 0 114 255 210 85 255 232 170 1 0 0 regulation 1 color 255,210,85\ longLabel NH-A astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NH-A Ht\ subGroups view=b_Hot cellType=NH-A treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwNhaHotspot\ type bigBed 6 +\ ENCFF279ZNA_ENCFF282VQS_ENCFF054VRQ_ENCFF468WUY ENCFF279ZNA_ENCFF282VQS_ENCFF054VRQ_ENCFF468WUY bigBed 9 + 5 Upper lobe of left lung, female adult (51 years): (1) cCREs 4 115 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF279ZNA_ENCFF282VQS_ENCFF054VRQ_ENCFF468WUY.bb\ longLabel Upper lobe of left lung, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 163\ shortLabel ENCFF279ZNA_ENCFF282VQS_ENCFF054VRQ_ENCFF468WUY\ subGroups organ=lung view=cCREs_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF279ZNA_ENCFF282VQS_ENCFF054VRQ_ENCFF468WUY\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF880MVC ENCSR000BGE Peak bigBed 5 GM12878 SRF peaks 4 115 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4163b190-8504-4d6c-a916-ed9ec9795cd1/ENCFF880MVC.bigBed\ labelFields none\ longLabel GM12878 SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF880MVC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF047DPU ENCSR000DLW Signal bigWig Endothelial cell of umbilical vein newborn CTCF signal 2 115 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6fe39c9e-c134-4113-8247-bdedebcdd077/ENCFF047DPU.bigWig\ color 0,176,240\ longLabel Endothelial cell of umbilical vein newborn CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DLW Signal\ track wgEncodeReg4Epigenetics_ENCFF047DPU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF401YXF ENCSR020YQE + strand bigWig Mammary epithelial cell female adult (19 years) + strand total RNA-seq signal 2 115 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/c46ea9c6-38f7-4eef-8950-b937bcffdb00/ENCFF401YXF.bigWig\ color 65,171,173\ longLabel Mammary epithelial cell female adult (19 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR020YQE + strand\ track wgEncodeReg4RnaSeq_ENCFF401YXF\ type bigWig\ visibility full\ esophEp426 Esophagus - Epithelial - Z00000426 bigWig Methylation Atlas: Esophagus - Epithelial - Z00000426 2 115 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/esophEp426.bw\ color 0,206,209\ longLabel Methylation Atlas: Esophagus - Epithelial - Z00000426\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 115\ shortLabel Esophagus - Epithelial - Z00000426\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track esophEp426\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF116AMK GM12878 ETV6 1 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF116AMK) 0 115 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF116AMK)\ parent encTfChipPk off\ shortLabel GM12878 ETV6 1\ subGroups cellType=GM12878 factor=ETV6\ track encTfChipPkENCFF116AMK\ wgEncodeRegDnaseUwHbmecHotspot HBMEC Ht bigBed 6 + HBMEC brain microvascular endothelial cell (MEC) DNaseI Hotspots from ENCODE 0 115 255 214 85 255 234 170 1 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HBMEC Ht\ subGroups view=b_Hot cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbmecHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward 0 115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward 1 115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018503245v1 HG03486.pat chain GCA_018503245.1 HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 115 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503245.1\ parent hprcChainNetViewchain off\ priority 35\ shortLabel HG03486.pat\ subGroups view=chain sample=s035 population=afr subpop=msl hap=pat\ track chainHprcGCA_018503245v1\ type chain GCA_018503245.1\ wgEncodeRegDnaseUwAg09319Hotspot AG09319 Ht bigBed 6 + AG09319 gingival fibroblast DNaseI Hotspots from ENCODE 0 116 255 221 85 255 238 170 1 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG09319 Ht\ subGroups view=b_Hot cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwAg09319Hotspot\ type bigBed 6 +\ ENCFF990HTO_ENCFF973MQG_ENCFF441OEQ_ENCFF002ZEZ ENCFF990HTO_ENCFF973MQG_ENCFF441OEQ_ENCFF002ZEZ bigBed 9 + 5 Left lung, male adult (40 years): (1) cCREs 4 116 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF990HTO_ENCFF973MQG_ENCFF441OEQ_ENCFF002ZEZ.bb\ longLabel Left lung, male adult (40 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 61\ shortLabel ENCFF990HTO_ENCFF973MQG_ENCFF441OEQ_ENCFF002ZEZ\ subGroups organ=lung view=cCREs_view simpleBiosample=left_lung-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeCcres\ track ENCFF990HTO_ENCFF973MQG_ENCFF441OEQ_ENCFF002ZEZ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF127YAF ENCSR000BGE Signal bigWig GM12878 SRF ENCSR000BGE signal 2 116 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/d005bf4f-5243-4c50-a3ec-d313e079280b/ENCFF127YAF.bigWig\ color 254,75,173\ longLabel GM12878 SRF ENCSR000BGE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGE Signal\ track wgEncodeReg4TfChip_ENCFF127YAF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF335EKK ENCSR000DMC Peak bigBed 5 Kidney tissue male adult 22 years and male adult 27 years and male adult 35 years CTCF peak 4 116 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d0e3a135-0282-4606-98b8-6be3455590ad/ENCFF335EKK.bigBed\ color 0,176,240\ labelFields none\ longLabel Kidney tissue male adult 22 years and male adult 27 years and male adult 35 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMC Peak\ track wgEncodeReg4Epigenetics_ENCFF335EKK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF963DOX ENCSR020YQE - strand bigWig Mammary epithelial cell female adult (19 years) - strand total RNA-seq signal 2 116 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/bf8094ef-84aa-4787-a0e8-9208fbe937de/ENCFF963DOX.bigWig\ color 65,171,173\ longLabel Mammary epithelial cell female adult (19 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR020YQE - strand\ track wgEncodeReg4RnaSeq_ENCFF963DOX\ type bigWig\ visibility full\ encTfChipPkENCFF745ANU GM12878 ETV6 2 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF745ANU) 0 116 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in GM12878 from ENCODE 3 (ENCFF745ANU)\ parent encTfChipPk off\ shortLabel GM12878 ETV6 2\ subGroups cellType=GM12878 factor=ETV6\ track encTfChipPkENCFF745ANU\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse 0 116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse 1 116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep1.CNhs13654.13329-143B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep1_CNhs13654_13329-143B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13329-143B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep1_CNhs13654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13329-143B8\ urlLabel FANTOM5 Details:\ netHprcGCA_018503245v1 HG03486.pat netAlign GCA_018503245.1 chainHprcGCA_018503245v1 HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chain Nets 1 116 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03486.pat HG03486.alt.pat.f1_v2 (May 2021 GCA_018503245.1_HG03486.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503245.1\ parent hprcChainNetViewnet off\ priority 35\ shortLabel HG03486.pat\ subGroups view=net sample=s035 population=afr subpop=msl hap=pat\ track netHprcGCA_018503245v1\ type netAlign GCA_018503245.1 chainHprcGCA_018503245v1\ larynxEp0QB Larynx - Epithelial - Z000000QB bigWig Methylation Atlas: Larynx - Epithelial - Z000000QB 2 116 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/larynxEp0QB.bw\ color 0,206,209\ longLabel Methylation Atlas: Larynx - Epithelial - Z000000QB\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 116\ shortLabel Larynx - Epithelial - Z000000QB\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track larynxEp0QB\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF505TAB_ENCFF117DUU_ENCFF752LEN_ENCFF750ENA ENCFF505TAB_ENCFF117DUU_ENCFF752LEN_ENCFF750ENA bigBed 9 + 5 Upper lobe of left lung, male adult (54 years): (1) cCREs 4 117 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF505TAB_ENCFF117DUU_ENCFF752LEN_ENCFF750ENA.bb\ longLabel Upper lobe of left lung, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 166\ shortLabel ENCFF505TAB_ENCFF117DUU_ENCFF752LEN_ENCFF750ENA\ subGroups organ=lung view=cCREs_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF505TAB_ENCFF117DUU_ENCFF752LEN_ENCFF750ENA\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF235NGC ENCSR000BGF Peak bigBed 5 GM12878 REST peaks 4 117 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/b452aee4-3263-49bb-8ce9-6bfc158d64b2/ENCFF235NGC.bigBed\ labelFields none\ longLabel GM12878 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF235NGC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF446TPO ENCSR000DMC Signal bigWig Kidney tissue male adult 22 years and male adult 27 years and male adult 35 years CTCF signal 2 117 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8c194f62-e886-4306-9e26-498d1f86530b/ENCFF446TPO.bigWig\ color 0,176,240\ longLabel Kidney tissue male adult 22 years and male adult 27 years and male adult 35 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMC Signal\ track wgEncodeReg4Epigenetics_ENCFF446TPO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF796PND ENCSR023ZXN + strand bigWig Thyroid gland tissue male adult (54 years) + strand total RNA-seq signal 2 117 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/16825bfd-d92c-4f85-a55f-6e29f5fc2fff/ENCFF796PND.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR023ZXN + strand\ track wgEncodeReg4RnaSeq_ENCFF796PND\ type bigWig\ visibility full\ encTfChipPkENCFF615NYO GM12878 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM12878 from ENCODE 3 (ENCFF615NYO) 0 117 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM12878 from ENCODE 3 (ENCFF615NYO)\ parent encTfChipPk off\ shortLabel GM12878 EZH2\ subGroups cellType=GM12878 factor=EZH2\ track encTfChipPkENCFF615NYO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward 0 117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward 1 117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506155v1 HG03098.pat chain GCA_018506155.1 HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 117 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506155.1\ parent hprcChainNetViewchain off\ priority 37\ shortLabel HG03098.pat\ subGroups view=chain sample=s037 population=afr subpop=msl hap=pat\ track chainHprcGCA_018506155v1\ type chain GCA_018506155.1\ wgEncodeRegDnaseUwHpdlfHotspot HPdLF Ht bigBed 6 + HPdLF periodontal ligament fibroblast DNaseI Hotspots from ENCODE 0 117 255 224 85 255 239 170 1 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HPdLF Ht\ subGroups view=b_Hot cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHpdlfHotspot\ type bigBed 6 +\ pharynxEp44A Pharynx - Epithelial - Z0000044A bigWig Methylation Atlas: Pharynx - Epithelial - Z0000044A 2 117 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pharynxEp44A.bw\ color 0,206,209\ longLabel Methylation Atlas: Pharynx - Epithelial - Z0000044A\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 117\ shortLabel Pharynx - Epithelial - Z0000044A\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track pharynxEp44A\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF421SBY_ENCFF032IZZ_ENCFF504NPN_ENCFF812ODW ENCFF421SBY_ENCFF032IZZ_ENCFF504NPN_ENCFF812ODW bigBed 9 + 5 Lower lobe of left lung, male adult (60 years): (1) cCREs 4 118 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF421SBY_ENCFF032IZZ_ENCFF504NPN_ENCFF812ODW.bb\ longLabel Lower lobe of left lung, male adult (60 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 64\ shortLabel ENCFF421SBY_ENCFF032IZZ_ENCFF504NPN_ENCFF812ODW\ subGroups organ=lung view=cCREs_view simpleBiosample=lower_lobe_of_left_lung-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeCcres\ track ENCFF421SBY_ENCFF032IZZ_ENCFF504NPN_ENCFF812ODW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF248GFX ENCSR000BGF Signal bigWig GM12878 REST ENCSR000BGF signal 2 118 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5fc0235c-e26b-4873-944b-644431de0ea1/ENCFF248GFX.bigWig\ color 254,75,173\ longLabel GM12878 REST ENCSR000BGF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGF Signal\ track wgEncodeReg4TfChip_ENCFF248GFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF855VBR ENCSR000DME Peak bigBed 5 LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours CTCF peak 4 118 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f08f1d6d-7c67-4d97-8555-a988e043f567/ENCFF855VBR.bigBed\ color 0,176,240\ labelFields none\ longLabel LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DME Peak\ track wgEncodeReg4Epigenetics_ENCFF855VBR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF230MJR ENCSR023ZXN - strand bigWig Thyroid gland tissue male adult (54 years) - strand total RNA-seq signal 2 118 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/b15db4a6-f1f9-48d4-8e79-6a59f998a3e5/ENCFF230MJR.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR023ZXN - strand\ track wgEncodeReg4RnaSeq_ENCFF230MJR\ type bigWig\ visibility full\ encTfChipPkENCFF990MTR GM12878 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in GM12878 from ENCODE 3 (ENCFF990MTR) 0 118 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in GM12878 from ENCODE 3 (ENCFF990MTR)\ parent encTfChipPk off\ shortLabel GM12878 FOXK2\ subGroups cellType=GM12878 factor=FOXK2\ track encTfChipPkENCFF990MTR\ wgEncodeRegDnaseUwHcfHotspot HCF Ht bigBed 6 + HCF cardiac fibroblast DNaseI Hotspots from ENCODE 0 118 255 229 85 255 242 170 1 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCF Ht\ subGroups view=b_Hot cellType=HCF treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse 0 118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse 1 118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep2.CNhs13714.13341-143D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep2_CNhs13714_13341-143D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13341-143D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep2_CNhs13714_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13341-143D2\ urlLabel FANTOM5 Details:\ netHprcGCA_018506155v1 HG03098.pat netAlign GCA_018506155.1 chainHprcGCA_018506155v1 HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chain Nets 1 118 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03098.pat HG03098.alt.pat.f1_v2 (May 2021 GCA_018506155.1_HG03098.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506155.1\ parent hprcChainNetViewnet off\ priority 37\ shortLabel HG03098.pat\ subGroups view=net sample=s037 population=afr subpop=msl hap=pat\ track netHprcGCA_018506155v1\ type netAlign GCA_018506155.1 chainHprcGCA_018506155v1\ tongueEp0QV Tongue - Epithelial - Z000000QV bigWig Methylation Atlas: Tongue - Epithelial - Z000000QV 2 118 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tongueEp0QV.bw\ color 0,206,209\ longLabel Methylation Atlas: Tongue - Epithelial - Z000000QV\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 118\ shortLabel Tongue - Epithelial - Z000000QV\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tongueEp0QV\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF935VSX_ENCFF642TNR_ENCFF397ZHX_ENCFF975RFH ENCFF935VSX_ENCFF642TNR_ENCFF397ZHX_ENCFF975RFH bigBed 9 + 5 Left lung, female child (16 years): (1) cCREs 4 119 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF935VSX_ENCFF642TNR_ENCFF397ZHX_ENCFF975RFH.bb\ longLabel Left lung, female child (16 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 60\ shortLabel ENCFF935VSX_ENCFF642TNR_ENCFF397ZHX_ENCFF975RFH\ subGroups organ=lung view=cCREs_view simpleBiosample=left_lung-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeCcres\ track ENCFF935VSX_ENCFF642TNR_ENCFF397ZHX_ENCFF975RFH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF880HJL ENCSR000BGI Peak bigBed 5 GM12878 USF1 peaks 4 119 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/12b6c84a-0198-4a44-ad0a-6161433baebf/ENCFF880HJL.bigBed\ labelFields none\ longLabel GM12878 USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF880HJL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF486AVY ENCSR000DME Signal bigWig LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours CTCF signal 2 119 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7ecd4ac7-f61e-4391-b0c1-83fb692ffab7/ENCFF486AVY.bigWig\ color 0,176,240\ longLabel LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DME Signal\ track wgEncodeReg4Epigenetics_ENCFF486AVY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF177UMP ENCSR025BZY + strand bigWig Dorsolateral prefrontal cortex tissue female adult (82 years) + strand total RNA-seq signal 2 119 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/9c1685f0-fff4-4b51-b749-f1d9dd9a393a/ENCFF177UMP.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (82 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR025BZY + strand\ track wgEncodeReg4RnaSeq_ENCFF177UMP\ type bigWig\ visibility full\ encTfChipPkENCFF946ACA GM12878 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in GM12878 from ENCODE 3 (ENCFF946ACA) 0 119 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in GM12878 from ENCODE 3 (ENCFF946ACA)\ parent encTfChipPk off\ shortLabel GM12878 GABPA\ subGroups cellType=GM12878 factor=GABPA\ track encTfChipPkENCFF946ACA\ wgEncodeRegDnaseUwHcmHotspot HCM Ht bigBed 6 + HCM cardiac myocyte DNaseI Hotspots from ENCODE 0 119 255 230 85 255 242 170 1 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCM Ht\ subGroups view=b_Hot cellType=HCM treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcmHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day02Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward 0 119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day02Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward 1 119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471535v1 HG02148.mat chain GCA_018471535.1 HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 119 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471535.1\ parent hprcChainNetViewchain off\ priority 62\ shortLabel HG02148.mat\ subGroups view=chain sample=s062 population=amr subpop=pel hap=mat\ track chainHprcGCA_018471535v1\ type chain GCA_018471535.1\ tongueEp449 Tongue - Epithelial - Z00000449 bigWig Methylation Atlas: Tongue - Epithelial - Z00000449 2 119 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tongueEp449.bw\ color 0,206,209\ longLabel Methylation Atlas: Tongue - Epithelial - Z00000449\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 119\ shortLabel Tongue - Epithelial - Z00000449\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tongueEp449\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF960WAV_ENCFF372LSW_ENCFF174WAB_ENCFF543MYI ENCFF960WAV_ENCFF372LSW_ENCFF174WAB_ENCFF543MYI bigBed 9 + 5 Upper lobe of left lung, female adult (53 years): (1) cCREs 4 120 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF960WAV_ENCFF372LSW_ENCFF174WAB_ENCFF543MYI.bb\ longLabel Upper lobe of left lung, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 164\ shortLabel ENCFF960WAV_ENCFF372LSW_ENCFF174WAB_ENCFF543MYI\ subGroups organ=lung view=cCREs_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF960WAV_ENCFF372LSW_ENCFF174WAB_ENCFF543MYI\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF029MAS ENCSR000BGI Signal bigWig GM12878 USF1 ENCSR000BGI signal 2 120 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8c41519c-8d61-49ff-a094-e0ecb41fa018/ENCFF029MAS.bigWig\ color 254,75,173\ longLabel GM12878 USF1 ENCSR000BGI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGI Signal\ track wgEncodeReg4TfChip_ENCFF029MAS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF519YVI ENCSR000DMF Peak bigBed 5 LNCaP clone FGC CTCF peak 4 120 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/02d4b033-92de-4d0f-939b-89af51f48e59/ENCFF519YVI.bigBed\ color 0,176,240\ labelFields none\ longLabel LNCaP clone FGC CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMF Peak\ track wgEncodeReg4Epigenetics_ENCFF519YVI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF071PMH ENCSR025BZY - strand bigWig Dorsolateral prefrontal cortex tissue female adult (82 years) - strand total RNA-seq signal 2 120 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/88c48c93-e847-4c31-a04d-9fdacc8d218d/ENCFF071PMH.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (82 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR025BZY - strand\ track wgEncodeReg4RnaSeq_ENCFF071PMH\ type bigWig\ visibility full\ encTfChipPkENCFF298AIX GM12878 GATAD2B narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in GM12878 from ENCODE 3 (ENCFF298AIX) 0 120 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in GM12878 from ENCODE 3 (ENCFF298AIX)\ parent encTfChipPk off\ shortLabel GM12878 GATAD2B\ subGroups cellType=GM12878 factor=GATAD2B\ track encTfChipPkENCFF298AIX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_rev Hes3-gfpCardiomyocyticInduction_Day02Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse 0 120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_rev Hes3-gfpCardiomyocyticInduction_Day02Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse 1 120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day02%2c%20biol_rep3.CNhs13726.13353-143E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day02, biol_rep3_CNhs13726_13353-143E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13353-143E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay02BiolRep3_CNhs13726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13353-143E5\ urlLabel FANTOM5 Details:\ netHprcGCA_018471535v1 HG02148.mat netAlign GCA_018471535.1 chainHprcGCA_018471535v1 HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chain Nets 1 120 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02148.mat HG02148.pri.mat.f1_v2 (May 2021 GCA_018471535.1_HG02148.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471535.1\ parent hprcChainNetViewnet off\ priority 62\ shortLabel HG02148.mat\ subGroups view=net sample=s062 population=amr subpop=pel hap=mat\ track netHprcGCA_018471535v1\ type netAlign GCA_018471535.1 chainHprcGCA_018471535v1\ wgEncodeRegDnaseUwHpafHotspot HPAF Ht bigBed 6 + HPAF pulmonary artery fibroblast DNaseI Hotspots from ENCODE 0 120 255 232 85 255 243 170 1 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HPAF Ht\ subGroups view=b_Hot cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHpafHotspot\ type bigBed 6 +\ tongueEp44F Tongue - Epithelial - Z0000044F bigWig Methylation Atlas: Tongue - Epithelial - Z0000044F 2 120 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tongueEp44F.bw\ color 0,206,209\ longLabel Methylation Atlas: Tongue - Epithelial - Z0000044F\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 120\ shortLabel Tongue - Epithelial - Z0000044F\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tongueEp44F\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwAoafHotspot AoAF Ht bigBed 6 + AoAF aorta fibroblast DNaseI Hotspots from ENCODE 0 121 255 236 85 255 245 170 1 0 0 regulation 1 color 255,236,85\ longLabel AoAF aorta fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AoAF Ht\ subGroups view=b_Hot cellType=AoAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwAoafHotspot\ type bigBed 6 +\ ENCFF674RXU_ENCFF996QZC_ENCFF607SXR_ENCFF862ZOO ENCFF674RXU_ENCFF996QZC_ENCFF607SXR_ENCFF862ZOO bigBed 9 + 5 Upper lobe of left lung, male adult (37 years): (1) cCREs 4 121 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF674RXU_ENCFF996QZC_ENCFF607SXR_ENCFF862ZOO.bb\ longLabel Upper lobe of left lung, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 165\ shortLabel ENCFF674RXU_ENCFF996QZC_ENCFF607SXR_ENCFF862ZOO\ subGroups organ=lung view=cCREs_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF674RXU_ENCFF996QZC_ENCFF607SXR_ENCFF862ZOO\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF172HFZ ENCSR000BGK Peak bigBed 5 HepG2 JUND peaks 4 121 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/3945fd60-543b-4268-8b5c-435e0dab65b6/ENCFF172HFZ.bigBed\ labelFields none\ longLabel HepG2 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF172HFZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF076NHL ENCSR000DMF Signal bigWig LNCaP clone FGC CTCF signal 2 121 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0f17548a-d561-4406-9b7b-edc443d02551/ENCFF076NHL.bigWig\ color 0,176,240\ longLabel LNCaP clone FGC CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMF Signal\ track wgEncodeReg4Epigenetics_ENCFF076NHL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF182JIC ENCSR029KNZ + strand bigWig Testis tissue male adult (37 years) + strand total RNA-seq signal 2 121 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/76d0b919-7808-4b38-8ecc-27e20176d135/ENCFF182JIC.bigWig\ color 139,140,140\ longLabel Testis tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR029KNZ + strand\ track wgEncodeReg4RnaSeq_ENCFF182JIC\ type bigWig\ visibility full\ encTfChipPkENCFF722QBB GM12878 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in GM12878 from ENCODE 3 (ENCFF722QBB) 0 121 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in GM12878 from ENCODE 3 (ENCFF722QBB)\ parent encTfChipPk off\ shortLabel GM12878 HCFC1\ subGroups cellType=GM12878 factor=HCFC1\ track encTfChipPkENCFF722QBB\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward 0 121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward 1 121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471545v1 HG01952.mat chain GCA_018471545.1 HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 121 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471545.1\ parent hprcChainNetViewchain off\ priority 63\ shortLabel HG01952.mat\ subGroups view=chain sample=s063 population=amr subpop=pel hap=mat\ track chainHprcGCA_018471545v1\ type chain GCA_018471545.1\ tongueBaseEp44B Tongue base - Epithelial - Z0000044B bigWig Methylation Atlas: Tongue base - Epithelial - Z0000044B 2 121 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tongueBaseEp44B.bw\ color 0,206,209\ longLabel Methylation Atlas: Tongue base - Epithelial - Z0000044B\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 121\ shortLabel Tongue base - Epithelial - Z0000044B\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tongueBaseEp44B\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF615BRP_ENCFF902HIA_ENCFF375YPQ_ENCFF033FEG ENCFF615BRP_ENCFF902HIA_ENCFF375YPQ_ENCFF033FEG bigBed 9 + 5 Lower lobe of left lung, female adult (59 years): (1) cCREs 4 122 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF615BRP_ENCFF902HIA_ENCFF375YPQ_ENCFF033FEG.bb\ longLabel Lower lobe of left lung, female adult (59 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 63\ shortLabel ENCFF615BRP_ENCFF902HIA_ENCFF375YPQ_ENCFF033FEG\ subGroups organ=lung view=cCREs_view simpleBiosample=lower_lobe_of_left_lung-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCcres\ track ENCFF615BRP_ENCFF902HIA_ENCFF375YPQ_ENCFF033FEG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF506FJI ENCSR000BGK Signal bigWig HepG2 JUND ENCSR000BGK signal 2 122 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/59c429e2-ec2e-4455-8ecd-45280e28da8a/ENCFF506FJI.bigWig\ color 137,152,82\ longLabel HepG2 JUND ENCSR000BGK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGK Signal\ track wgEncodeReg4TfChip_ENCFF506FJI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF782RBX ENCSR000DMH Peak bigBed 5 Lung tissue male adult 27 years and male adult 35 years CTCF peak 4 122 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/d98570e5-9630-47fa-91ea-f9418b4bc59d/ENCFF782RBX.bigBed\ color 0,176,240\ labelFields none\ longLabel Lung tissue male adult 27 years and male adult 35 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMH Peak\ track wgEncodeReg4Epigenetics_ENCFF782RBX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF320DQM ENCSR029KNZ - strand bigWig Testis tissue male adult (37 years) - strand total RNA-seq signal 2 122 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/9653fd91-f9f5-4b14-9039-037ef0e9984e/ENCFF320DQM.bigWig\ color 139,140,140\ longLabel Testis tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR029KNZ - strand\ track wgEncodeReg4RnaSeq_ENCFF320DQM\ type bigWig\ visibility full\ encTfChipPkENCFF299UPZ GM12878 HDAC2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in GM12878 from ENCODE 3 (ENCFF299UPZ) 0 122 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in GM12878 from ENCODE 3 (ENCFF299UPZ)\ parent encTfChipPk off\ shortLabel GM12878 HDAC2\ subGroups cellType=GM12878 factor=HDAC2\ track encTfChipPkENCFF299UPZ\ wgEncodeRegDnaseUwHcpepicHotspot HCPEpiC Ht bigBed 6 + HCPEpiC choroid plexus epithelium DNaseI Hotspots from ENCODE 0 122 255 242 85 255 248 170 1 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCPEpiC Ht\ subGroups view=b_Hot cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHcpepicHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse 0 122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse 1 122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep1.CNhs13655.13330-143B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep1_CNhs13655_13330-143B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13330-143B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep1_CNhs13655_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13330-143B9\ urlLabel FANTOM5 Details:\ netHprcGCA_018471545v1 HG01952.mat netAlign GCA_018471545.1 chainHprcGCA_018471545v1 HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chain Nets 1 122 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01952.mat HG01952.pri.mat.f1_v2 (May 2021 GCA_018471545.1_HG01952.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471545.1\ parent hprcChainNetViewnet off\ priority 63\ shortLabel HG01952.mat\ subGroups view=net sample=s063 population=amr subpop=pel hap=mat\ track netHprcGCA_018471545v1\ type netAlign GCA_018471545.1 chainHprcGCA_018471545v1\ tonsilPalatineEp0QF Tonsil Palatine - Epithelial - Z000000QF bigWig Methylation Atlas: Tonsil Palatine - Epithelial - Z000000QF 2 122 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tonsilPalatineEp0QF.bw\ color 0,206,209\ longLabel Methylation Atlas: Tonsil Palatine - Epithelial - Z000000QF\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 122\ shortLabel Tonsil Palatine - Epithelial - Z000000QF\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tonsilPalatineEp0QF\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF816IIS_ENCFF958CFK_ENCFF213BSP_ENCFF070LLG ENCFF816IIS_ENCFF958CFK_ENCFF213BSP_ENCFF070LLG bigBed 9 + 5 A673: (1) cCREs 4 123 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF816IIS_ENCFF958CFK_ENCFF213BSP_ENCFF070LLG.bb\ longLabel A673: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 1\ shortLabel ENCFF816IIS_ENCFF958CFK_ENCFF213BSP_ENCFF070LLG\ subGroups organ=muscle view=cCREs_view simpleBiosample=A673 biosampleType=cell_line donor=ENCDO027VXA dataType=typeCcres\ track ENCFF816IIS_ENCFF958CFK_ENCFF213BSP_ENCFF070LLG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF394WQQ ENCSR000BGL Peak bigBed 5 HepG2 SIN3A peaks 4 123 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/d3e2bc47-10bb-48cc-a8c9-aaea2114029f/ENCFF394WQQ.bigBed\ labelFields none\ longLabel HepG2 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF394WQQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF827WDQ ENCSR000DMH Signal bigWig Lung tissue male adult 27 years and male adult 35 years CTCF signal 2 123 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/012c87c1-c628-4f05-b64b-0445a1c0cc4d/ENCFF827WDQ.bigWig\ color 0,176,240\ longLabel Lung tissue male adult 27 years and male adult 35 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMH Signal\ track wgEncodeReg4Epigenetics_ENCFF827WDQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF579IBH ENCSR033XWU + strand bigWig CD4-positive, alpha-beta T cell male adult (20 years) + strand total RNA-seq signal 2 123 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/04dd38b7-74ff-4d82-95ab-a23237f0650d/ENCFF579IBH.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta T cell male adult (20 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR033XWU + strand\ track wgEncodeReg4RnaSeq_ENCFF579IBH\ type bigWig\ visibility full\ encTfChipPkENCFF248JAL GM12878 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in GM12878 from ENCODE 3 (ENCFF248JAL) 0 123 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in GM12878 from ENCODE 3 (ENCFF248JAL)\ parent encTfChipPk off\ shortLabel GM12878 HDAC6\ subGroups cellType=GM12878 factor=HDAC6\ track encTfChipPkENCFF248JAL\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward 0 123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward 1 123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472695v1 HG01928.mat chain GCA_018472695.1 HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 123 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472695.1\ parent hprcChainNetViewchain off\ priority 65\ shortLabel HG01928.mat\ subGroups view=chain sample=s065 population=amr subpop=pel hap=mat\ track chainHprcGCA_018472695v1\ type chain GCA_018472695.1\ wgEncodeRegDnaseUwHpfHotspot HPF Ht bigBed 6 + HPF pulmonary fibroblast DNaseI Hotspots from ENCODE 0 123 255 247 85 255 251 170 1 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HPF Ht\ subGroups view=b_Hot cellType=HPF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwHpfHotspot\ type bigBed 6 +\ tonsilPalatineEp0RP Tonsil Palatine - Epithelial - Z000000RP bigWig Methylation Atlas: Tonsil Palatine - Epithelial - Z000000RP 2 123 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tonsilPalatineEp0RP.bw\ color 0,206,209\ longLabel Methylation Atlas: Tonsil Palatine - Epithelial - Z000000RP\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 123\ shortLabel Tonsil Palatine - Epithelial - Z000000RP\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tonsilPalatineEp0RP\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF648XPS_ENCFF207MNM_ENCFF485DKZ_ENCFF466BIT ENCFF648XPS_ENCFF207MNM_ENCFF485DKZ_ENCFF466BIT bigBed 9 + 5 Cardiac muscle cell, embryo: (1) cCREs 4 124 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF648XPS_ENCFF207MNM_ENCFF485DKZ_ENCFF466BIT.bb\ longLabel Cardiac muscle cell, embryo: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 19\ shortLabel ENCFF648XPS_ENCFF207MNM_ENCFF485DKZ_ENCFF466BIT\ subGroups organ=muscle view=cCREs_view simpleBiosample=cardiac_muscle_cell-_embryo biosampleType=in_vitro_differentiated_cells donor=ENCDO924HBJ dataType=typeCcres\ track ENCFF648XPS_ENCFF207MNM_ENCFF485DKZ_ENCFF466BIT\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF223BYL ENCSR000BGL Signal bigWig HepG2 SIN3A ENCSR000BGL signal 2 124 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b98f3eb2-7182-4c6b-a974-aa50be53a1d9/ENCFF223BYL.bigWig\ color 137,152,82\ longLabel HepG2 SIN3A ENCSR000BGL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGL Signal\ track wgEncodeReg4TfChip_ENCFF223BYL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF379HST ENCSR000DMS Peak bigBed 5 MCF-7 treated with 100 nM 17β-estradiol for 45 minutes CTCF peak 4 124 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d120092e-4f9c-49d4-900d-204b2c529eb9/ENCFF379HST.bigBed\ color 0,176,240\ labelFields none\ longLabel MCF-7 treated with 100 nM 17β-estradiol for 45 minutes CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMS Peak\ track wgEncodeReg4Epigenetics_ENCFF379HST\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF500JUA ENCSR033XWU - strand bigWig CD4-positive, alpha-beta T cell male adult (20 years) - strand total RNA-seq signal 2 124 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/1c29f07c-e140-441d-8dc5-87a8c231235a/ENCFF500JUA.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta T cell male adult (20 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR033XWU - strand\ track wgEncodeReg4RnaSeq_ENCFF500JUA\ type bigWig\ visibility full\ encTfChipPkENCFF603BID GM12878 HSF1 narrowPeak Transcription Factor ChIP-seq Peaks of HSF1 in GM12878 from ENCODE 3 (ENCFF603BID) 0 124 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of HSF1 in GM12878 from ENCODE 3 (ENCFF603BID)\ parent encTfChipPk off\ shortLabel GM12878 HSF1\ subGroups cellType=GM12878 factor=HSF1\ track encTfChipPkENCFF603BID\ wgEncodeRegDnaseUwHconfHotspot HConF Ht bigBed 6 + HConF conjunctival fibroblast DNaseI Hotspots from ENCODE 0 124 255 252 85 255 253 170 1 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HConF Ht\ subGroups view=b_Hot cellType=HConF treatment=n_a tissue=eye cancer=unknown\ track wgEncodeRegDnaseUwHconfHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse 0 124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse 1 124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep2.CNhs13715.13342-143D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep2_CNhs13715_13342-143D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13342-143D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep2_CNhs13715_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13342-143D3\ urlLabel FANTOM5 Details:\ netHprcGCA_018472695v1 HG01928.mat netAlign GCA_018472695.1 chainHprcGCA_018472695v1 HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chain Nets 1 124 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01928.mat HG01928.pri.mat.f1_v2 (May 2021 GCA_018472695.1_HG01928.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472695.1\ parent hprcChainNetViewnet off\ priority 65\ shortLabel HG01928.mat\ subGroups view=net sample=s065 population=amr subpop=pel hap=mat\ track netHprcGCA_018472695v1\ type netAlign GCA_018472695.1 chainHprcGCA_018472695v1\ tonsilPalatineEp0RR Tonsil Palatine - Epithelial - Z000000RR bigWig Methylation Atlas: Tonsil Palatine - Epithelial - Z000000RR 2 124 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tonsilPalatineEp0RR.bw\ color 0,206,209\ longLabel Methylation Atlas: Tonsil Palatine - Epithelial - Z000000RR\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 124\ shortLabel Tonsil Palatine - Epithelial - Z000000RR\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tonsilPalatineEp0RR\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF103WUK_ENCFF707BCP_ENCFF638ZRF_ENCFF643VTS ENCFF103WUK_ENCFF707BCP_ENCFF638ZRF_ENCFF643VTS bigBed 9 + 5 Gastrocnemius medialis, female adult (51 years): (1) cCREs 4 125 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF103WUK_ENCFF707BCP_ENCFF638ZRF_ENCFF643VTS.bb\ longLabel Gastrocnemius medialis, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 29\ shortLabel ENCFF103WUK_ENCFF707BCP_ENCFF638ZRF_ENCFF643VTS\ subGroups organ=muscle view=cCREs_view simpleBiosample=gastrocnemius_medialis-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF103WUK_ENCFF707BCP_ENCFF638ZRF_ENCFF643VTS\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF807KYJ ENCSR000BGM Peak bigBed 5 HepG2 USF1 peaks 4 125 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f3e4b8b8-e453-405f-ad5a-f8d02d72602b/ENCFF807KYJ.bigBed\ labelFields none\ longLabel HepG2 USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF807KYJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF552YOG ENCSR000DMS Signal bigWig MCF-7 treated with 100 nM 17β-estradiol for 45 minutes CTCF signal 2 125 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c82aa250-ff84-4a8f-94f0-d80659c3aa5d/ENCFF552YOG.bigWig\ color 0,176,240\ longLabel MCF-7 treated with 100 nM 17β-estradiol for 45 minutes CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMS Signal\ track wgEncodeReg4Epigenetics_ENCFF552YOG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF673FLP ENCSR034DEZ + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H + strand total RNA-seq signal 2 125 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/f7523c94-5e5b-4ce4-829c-c4209ce25871/ENCFF673FLP.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR034DEZ + strand\ track wgEncodeReg4RnaSeq_ENCFF673FLP\ type bigWig\ visibility full\ encTfChipPkENCFF197ABX GM12878 IKZF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF197ABX) 0 125 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF197ABX)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 1\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF197ABX\ wgEncodeRegDnaseUwHacHotspot HAc Ht bigBed 6 + HAc cerebellar astrocyte DNaseI Hotspots from ENCODE 0 125 250 255 85 252 255 170 1 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HAc Ht\ subGroups view=b_Hot cellType=HAc treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHacHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day03Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward 0 125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day03Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward 1 125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472865v1 HG01978.mat chain GCA_018472865.1 HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 125 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472865.1\ parent hprcChainNetViewchain off\ priority 68\ shortLabel HG01978.mat\ subGroups view=chain sample=s068 population=amr subpop=pel hap=mat\ track chainHprcGCA_018472865v1\ type chain GCA_018472865.1\ tonsilPharyngealEp0Q9 Tonsil Pharyngeal - Epithelial - Z000000Q9 bigWig Methylation Atlas: Tonsil Pharyngeal - Epithelial - Z000000Q9 2 125 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tonsilPharyngealEp0Q9.bw\ color 0,206,209\ longLabel Methylation Atlas: Tonsil Pharyngeal - Epithelial - Z000000Q9\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 125\ shortLabel Tonsil Pharyngeal - Epithelial - Z000000Q9\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tonsilPharyngealEp0Q9\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF898XFY_ENCFF772JUK_ENCFF149TEN_ENCFF782JRA ENCFF898XFY_ENCFF772JUK_ENCFF149TEN_ENCFF782JRA bigBed 9 + 5 Gastrocnemius medialis, male adult (54 years): (1) cCREs 4 126 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF898XFY_ENCFF772JUK_ENCFF149TEN_ENCFF782JRA.bb\ longLabel Gastrocnemius medialis, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 32\ shortLabel ENCFF898XFY_ENCFF772JUK_ENCFF149TEN_ENCFF782JRA\ subGroups organ=muscle view=cCREs_view simpleBiosample=gastrocnemius_medialis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF898XFY_ENCFF772JUK_ENCFF149TEN_ENCFF782JRA\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF829OAJ ENCSR000BGM Signal bigWig HepG2 USF1 ENCSR000BGM signal 2 126 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7bbab07a-db93-4e3c-aec6-74d292d0b77c/ENCFF829OAJ.bigWig\ color 137,152,82\ longLabel HepG2 USF1 ENCSR000BGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGM Signal\ track wgEncodeReg4TfChip_ENCFF829OAJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF513FYD ENCSR000DMY Peak bigBed 5 D721Med CTCF peak 4 126 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7c9701c4-f270-49a4-b1a5-3e0a5dd489f4/ENCFF513FYD.bigBed\ color 0,176,240\ labelFields none\ longLabel D721Med CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMY Peak\ track wgEncodeReg4Epigenetics_ENCFF513FYD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF872OZF ENCSR034DEZ - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H - strand total RNA-seq signal 2 126 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/6f18cc42-8b5f-4d23-bbda-080a5ca82351/ENCFF872OZF.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR034DEZ - strand\ track wgEncodeReg4RnaSeq_ENCFF872OZF\ type bigWig\ visibility full\ encTfChipPkENCFF968NOG GM12878 IKZF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF968NOG) 0 126 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF968NOG)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 2\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF968NOG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_rev Hes3-gfpCardiomyocyticInduction_Day03Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse 0 126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_rev Hes3-gfpCardiomyocyticInduction_Day03Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse 1 126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day03%2c%20biol_rep3.CNhs13727.13354-143E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day03, biol_rep3_CNhs13727_13354-143E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13354-143E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay03BiolRep3_CNhs13727_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13354-143E6\ urlLabel FANTOM5 Details:\ netHprcGCA_018472865v1 HG01978.mat netAlign GCA_018472865.1 chainHprcGCA_018472865v1 HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chain Nets 1 126 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01978.mat HG01978.pri.mat.f1_v2 (May 2021 GCA_018472865.1_HG01978.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472865.1\ parent hprcChainNetViewnet off\ priority 68\ shortLabel HG01978.mat\ subGroups view=net sample=s068 population=amr subpop=pel hap=mat\ track netHprcGCA_018472865v1\ type netAlign GCA_018472865.1 chainHprcGCA_018472865v1\ wgEncodeRegDnaseUwHvmfHotspot HVMF Ht bigBed 6 + HVMF villous mesenchymal fibroblast DNaseI Hotspots from ENCODE 0 126 242 255 85 248 255 170 1 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HVMF Ht\ subGroups view=b_Hot cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ track wgEncodeRegDnaseUwHvmfHotspot\ type bigBed 6 +\ tonsilPharyngealEp0S1 Tonsil Pharyngeal - Epithelial - Z000000S1 bigWig Methylation Atlas: Tonsil Pharyngeal - Epithelial - Z000000S1 2 126 0 206 209 127 230 232 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/tonsilPharyngealEp0S1.bw\ color 0,206,209\ longLabel Methylation Atlas: Tonsil Pharyngeal - Epithelial - Z000000S1\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 126\ shortLabel Tonsil Pharyngeal - Epithelial - Z000000S1\ subGroups cellType=Head-Neck-Ep dataType=Replicate\ track tonsilPharyngealEp0S1\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF712ATQ_ENCFF880UEZ_ENCFF825YXF_ENCFF055HAN ENCFF712ATQ_ENCFF880UEZ_ENCFF825YXF_ENCFF055HAN bigBed 9 + 5 Gastrocnemius medialis, female adult (53 years): (1) cCREs 4 127 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF712ATQ_ENCFF880UEZ_ENCFF825YXF_ENCFF055HAN.bb\ longLabel Gastrocnemius medialis, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 30\ shortLabel ENCFF712ATQ_ENCFF880UEZ_ENCFF825YXF_ENCFF055HAN\ subGroups organ=muscle view=cCREs_view simpleBiosample=gastrocnemius_medialis-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF712ATQ_ENCFF880UEZ_ENCFF825YXF_ENCFF055HAN\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF773DNG ENCSR000BGO Peak bigBed 5 HeLa-S3 POLR2A peaks 4 127 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5d5ec348-78f8-4aa8-8e8f-0605963ccd8a/ENCFF773DNG.bigBed\ labelFields none\ longLabel HeLa-S3 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF773DNG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF312UWU ENCSR000DMY Signal bigWig D721Med CTCF signal 2 127 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/865ab9a6-0167-421f-927d-72fc6c6f84ca/ENCFF312UWU.bigWig\ color 0,176,240\ longLabel D721Med CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DMY Signal\ track wgEncodeReg4Epigenetics_ENCFF312UWU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF487XUM ENCSR035SKV + strand bigWig Gastroesophageal sphincter tissue female adult (51 years) + strand total RNA-seq signal 2 127 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/60ff01ac-2dfe-4878-9c7e-b5cdaba3a7a0/ENCFF487XUM.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR035SKV + strand\ track wgEncodeReg4RnaSeq_ENCFF487XUM\ type bigWig\ visibility full\ encTfChipPkENCFF018NNF GM12878 IKZF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF018NNF) 0 127 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in GM12878 from ENCODE 3 (ENCFF018NNF)\ parent encTfChipPk off\ shortLabel GM12878 IKZF1 3\ subGroups cellType=GM12878 factor=IKZF1\ track encTfChipPkENCFF018NNF\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward 0 127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward 1 127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471525v1 HG02148.pat chain GCA_018471525.1 HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 127 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471525.1\ parent hprcChainNetViewchain off\ priority 61\ shortLabel HG02148.pat\ subGroups view=chain sample=s061 population=amr subpop=pel hap=pat\ track chainHprcGCA_018471525v1\ type chain GCA_018471525.1\ wgEncodeRegDnaseUwHipepicHotspot HIPEpiC Ht bigBed 6 + HIPEpiC iris pigment epithelium DNaseI Hotspots from ENCODE 0 127 236 255 85 245 255 170 1 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HIPEpiC Ht\ subGroups view=b_Hot cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHipepicHotspot\ type bigBed 6 +\ lungBronEpMerged Lung Bronchus Epithelium Merged bigWig Methylation Atlas: Lung Bronchus Epithelium Merged Samples 2 127 100 149 237 177 202 246 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungBronEpMerged.bw\ color 100,149,237\ longLabel Methylation Atlas: Lung Bronchus Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 127\ shortLabel Lung Bronchus Epithelium Merged\ subGroups cellType=Lung-Ep-Bron dataType=Merged\ track lungBronEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwBonemarrowmscHotspot bonemarrow_MSC Ht bigBed 6 + bone_marrow_MSC bone marrow fibroblastoid DNaseI Hotspots from ENCODE 0 128 228 255 85 241 255 170 1 0 0 regulation 1 color 228,255,85\ longLabel bone_marrow_MSC bone marrow fibroblastoid DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel bonemarrow_MSC Ht\ subGroups view=b_Hot cellType=bone_marrow_MSC treatment=n_a tissue=bone_marrow cancer=normal\ track wgEncodeRegDnaseUwBonemarrowmscHotspot\ type bigBed 6 +\ ENCFF066BOK_ENCFF431FFY_ENCFF793HOY_ENCFF070MOG ENCFF066BOK_ENCFF431FFY_ENCFF793HOY_ENCFF070MOG bigBed 9 + 5 Gastrocnemius medialis, male adult (37 years): (1) cCREs 4 128 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF066BOK_ENCFF431FFY_ENCFF793HOY_ENCFF070MOG.bb\ longLabel Gastrocnemius medialis, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 31\ shortLabel ENCFF066BOK_ENCFF431FFY_ENCFF793HOY_ENCFF070MOG\ subGroups organ=muscle view=cCREs_view simpleBiosample=gastrocnemius_medialis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF066BOK_ENCFF431FFY_ENCFF793HOY_ENCFF070MOG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF180XTE ENCSR000BGO Signal bigWig HeLa-S3 POLR2A ENCSR000BGO signal 2 128 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/019f78d1-d1e4-4557-bb9e-ead60c978878/ENCFF180XTE.bigWig\ color 186,111,165\ longLabel HeLa-S3 POLR2A ENCSR000BGO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGO Signal\ track wgEncodeReg4TfChip_ENCFF180XTE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF101CZV ENCSR000DND Peak bigBed 5 Pancreas tissue male adult 54 years and male adult 60 years CTCF peak 4 128 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ed146764-12cb-4b9f-b7ad-23676410bfc8/ENCFF101CZV.bigBed\ color 0,176,240\ labelFields none\ longLabel Pancreas tissue male adult 54 years and male adult 60 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DND Peak\ track wgEncodeReg4Epigenetics_ENCFF101CZV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF757VDY ENCSR035SKV - strand bigWig Gastroesophageal sphincter tissue female adult (51 years) - strand total RNA-seq signal 2 128 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/18b047c1-2358-4fd9-b436-cb5c33fef5a1/ENCFF757VDY.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR035SKV - strand\ track wgEncodeReg4RnaSeq_ENCFF757VDY\ type bigWig\ visibility full\ encTfChipPkENCFF526WVH GM12878 IKZF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF526WVH) 0 128 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF526WVH)\ parent encTfChipPk off\ shortLabel GM12878 IKZF2 1\ subGroups cellType=GM12878 factor=IKZF2\ track encTfChipPkENCFF526WVH\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse 0 128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse 1 128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep1.CNhs13656.13331-143C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep1_CNhs13656_13331-143C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13331-143C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep1_CNhs13656_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13331-143C1\ urlLabel FANTOM5 Details:\ netHprcGCA_018471525v1 HG02148.pat netAlign GCA_018471525.1 chainHprcGCA_018471525v1 HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chain Nets 1 128 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG02148.pat HG02148.alt.pat.f1_v2 (May 2021 GCA_018471525.1_HG02148.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471525.1\ parent hprcChainNetViewnet off\ priority 61\ shortLabel HG02148.pat\ subGroups view=net sample=s061 population=amr subpop=pel hap=pat\ track netHprcGCA_018471525v1\ type netAlign GCA_018471525.1 chainHprcGCA_018471525v1\ lungBronEp0QD Lung Bronchus - Epithelial - Z000000QD bigWig Methylation Atlas: Lung Bronchus - Epithelial - Z000000QD 2 128 100 149 237 177 202 246 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungBronEp0QD.bw\ color 100,149,237\ longLabel Methylation Atlas: Lung Bronchus - Epithelial - Z000000QD\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 128\ shortLabel Lung Bronchus - Epithelial - Z000000QD\ subGroups cellType=Lung-Ep-Bron dataType=Replicate\ track lungBronEp0QD\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwAg10803Hotspot AG10803 Ht bigBed 6 + AG10803 skin fibroblast DNaseI Hotspots from ENCODE 0 129 220 255 85 237 255 170 1 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG10803 Ht\ subGroups view=b_Hot cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg10803Hotspot\ type bigBed 6 +\ ENCFF886QYD_ENCFF344ITP_ENCFF322ZPK_ENCFF526HRV ENCFF886QYD_ENCFF344ITP_ENCFF322ZPK_ENCFF526HRV bigBed 9 + 5 Esophagus muscularis mucosa, male adult (37 years): (1) cCREs 4 129 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF886QYD_ENCFF344ITP_ENCFF322ZPK_ENCFF526HRV.bb\ longLabel Esophagus muscularis mucosa, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 27\ shortLabel ENCFF886QYD_ENCFF344ITP_ENCFF322ZPK_ENCFF526HRV\ subGroups organ=muscle view=cCREs_view simpleBiosample=esophagus_muscularis_mucosa-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF886QYD_ENCFF344ITP_ENCFF322ZPK_ENCFF526HRV\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF207RKY ENCSR000BGP Peak bigBed 5 GM12878 POU2F2 peaks 4 129 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e47ee5f2-dedc-47ae-9a74-4b5917f04200/ENCFF207RKY.bigBed\ labelFields none\ longLabel GM12878 POU2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF207RKY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF876OHV ENCSR000DND Signal bigWig Pancreas tissue male adult 54 years and male adult 60 years CTCF signal 2 129 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f0308b14-8208-4b74-b254-084568f66ae6/ENCFF876OHV.bigWig\ color 0,176,240\ longLabel Pancreas tissue male adult 54 years and male adult 60 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DND Signal\ track wgEncodeReg4Epigenetics_ENCFF876OHV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF475JUK ENCSR036SUN + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 129 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/23f41caa-2d2d-4e76-b5bb-53331841ff80/ENCFF475JUK.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR036SUN + strand\ track wgEncodeReg4RnaSeq_ENCFF475JUK\ type bigWig\ visibility full\ encTfChipPkENCFF088OLI GM12878 IKZF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF088OLI) 0 129 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF2 in GM12878 from ENCODE 3 (ENCFF088OLI)\ parent encTfChipPk off\ shortLabel GM12878 IKZF2 2\ subGroups cellType=GM12878 factor=IKZF2\ track encTfChipPkENCFF088OLI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward 0 129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward 1 129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471555v1 HG01952.pat chain GCA_018471555.1 HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 129 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471555.1\ parent hprcChainNetViewchain off\ priority 64\ shortLabel HG01952.pat\ subGroups view=chain sample=s064 population=amr subpop=pel hap=pat\ track chainHprcGCA_018471555v1\ type chain GCA_018471555.1\ lungBronEp0RZ Lung Bronchus - Epithelial - Z000000RZ bigWig Methylation Atlas: Lung Bronchus - Epithelial - Z000000RZ 2 129 100 149 237 177 202 246 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungBronEp0RZ.bw\ color 100,149,237\ longLabel Methylation Atlas: Lung Bronchus - Epithelial - Z000000RZ\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 129\ shortLabel Lung Bronchus - Epithelial - Z000000RZ\ subGroups cellType=Lung-Ep-Bron dataType=Replicate\ track lungBronEp0RZ\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF639UGW_ENCFF958TLM_ENCFF549DZD_ENCFF670COF ENCFF639UGW_ENCFF958TLM_ENCFF549DZD_ENCFF670COF bigBed 9 + 5 Tibial nerve, female adult (51 years): (1) cCREs 4 130 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF639UGW_ENCFF958TLM_ENCFF549DZD_ENCFF670COF.bb\ longLabel Tibial nerve, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 155\ shortLabel ENCFF639UGW_ENCFF958TLM_ENCFF549DZD_ENCFF670COF\ subGroups organ=nerve view=cCREs_view simpleBiosample=tibial_nerve-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF639UGW_ENCFF958TLM_ENCFF549DZD_ENCFF670COF\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF366GEF ENCSR000BGP Signal bigWig GM12878 POU2F2 ENCSR000BGP signal 2 130 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c0cfeb12-f692-4b97-aac7-5d96bebcabf5/ENCFF366GEF.bigWig\ color 254,75,173\ longLabel GM12878 POU2F2 ENCSR000BGP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGP Signal\ track wgEncodeReg4TfChip_ENCFF366GEF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF678RAG ENCSR000DNI Peak bigBed 5 Spleen tissue female adult 20 years and female adult 30 years CTCF peak 4 130 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/7ac9cf4c-ae79-409d-b7b0-069493a8f59b/ENCFF678RAG.bigBed\ color 0,176,240\ labelFields none\ longLabel Spleen tissue female adult 20 years and female adult 30 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DNI Peak\ track wgEncodeReg4Epigenetics_ENCFF678RAG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF167JKM ENCSR036SUN - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 130 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/0ce1297c-2f9a-466a-954c-ec132496126a/ENCFF167JKM.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR036SUN - strand\ track wgEncodeReg4RnaSeq_ENCFF167JKM\ type bigWig\ visibility full\ encTfChipPkENCFF604AZX GM12878 IRF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF604AZX) 0 130 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF604AZX)\ parent encTfChipPk off\ shortLabel GM12878 IRF3 1\ subGroups cellType=GM12878 factor=IRF3\ track encTfChipPkENCFF604AZX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse 0 130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse 1 130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep2.CNhs13716.13343-143D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep2_CNhs13716_13343-143D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13343-143D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep2_CNhs13716_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13343-143D4\ urlLabel FANTOM5 Details:\ netHprcGCA_018471555v1 HG01952.pat netAlign GCA_018471555.1 chainHprcGCA_018471555v1 HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chain Nets 1 130 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01952.pat HG01952.alt.pat.f1_v2 (May 2021 GCA_018471555.1_HG01952.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471555.1\ parent hprcChainNetViewnet off\ priority 64\ shortLabel HG01952.pat\ subGroups view=net sample=s064 population=amr subpop=pel hap=pat\ track netHprcGCA_018471555v1\ type netAlign GCA_018471555.1 chainHprcGCA_018471555v1\ wgEncodeRegDnaseUwHmfHotspot HMF Ht bigBed 6 + HMF mammary fibroblast DNaseI Hotspots from ENCODE 0 130 212 255 85 233 255 170 1 0 0 regulation 1 color 212,255,85\ longLabel HMF mammary fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMF Ht\ subGroups view=b_Hot cellType=HMF treatment=n_a tissue=breast cancer=unknown\ track wgEncodeRegDnaseUwHmfHotspot\ type bigBed 6 +\ lungBronEp0S5 Lung Bronchus - Epithelial - Z000000S5 bigWig Methylation Atlas: Lung Bronchus - Epithelial - Z000000S5 2 130 100 149 237 177 202 246 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungBronEp0S5.bw\ color 100,149,237\ longLabel Methylation Atlas: Lung Bronchus - Epithelial - Z000000S5\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 130\ shortLabel Lung Bronchus - Epithelial - Z000000S5\ subGroups cellType=Lung-Ep-Bron dataType=Replicate\ track lungBronEp0S5\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF798CZY_ENCFF779PMH_ENCFF758AQR_ENCFF543LIT ENCFF798CZY_ENCFF779PMH_ENCFF758AQR_ENCFF543LIT bigBed 9 + 5 Tibial nerve, male adult (54 years): (1) cCREs 4 131 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF798CZY_ENCFF779PMH_ENCFF758AQR_ENCFF543LIT.bb\ longLabel Tibial nerve, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 157\ shortLabel ENCFF798CZY_ENCFF779PMH_ENCFF758AQR_ENCFF543LIT\ subGroups organ=nerve view=cCREs_view simpleBiosample=tibial_nerve-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF798CZY_ENCFF779PMH_ENCFF758AQR_ENCFF543LIT\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF134LCP ENCSR000BGQ Peak bigBed 5 GM12878 SPI1 peaks 4 131 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/fde12792-904f-49b8-907e-ebfe328388b8/ENCFF134LCP.bigBed\ labelFields none\ longLabel GM12878 SPI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF134LCP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF659YSR ENCSR000DNI Signal bigWig Spleen tissue female adult 20 years and female adult 30 years CTCF signal 2 131 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/0561d71d-979f-4e93-8c54-f60fd65bc2d6/ENCFF659YSR.bigWig\ color 0,176,240\ longLabel Spleen tissue female adult 20 years and female adult 30 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DNI Signal\ track wgEncodeReg4Epigenetics_ENCFF659YSR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF411VWO ENCSR042GYH + strand bigWig Ovary tissue female adult (51 years) + strand total RNA-seq signal 2 131 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/13f57913-fe43-47b8-ba98-42d3e9ae336a/ENCFF411VWO.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR042GYH + strand\ track wgEncodeReg4RnaSeq_ENCFF411VWO\ type bigWig\ visibility full\ encTfChipPkENCFF719MXF GM12878 IRF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF719MXF) 0 131 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in GM12878 from ENCODE 3 (ENCFF719MXF)\ parent encTfChipPk off\ shortLabel GM12878 IRF3 2\ subGroups cellType=GM12878 factor=IRF3\ track encTfChipPkENCFF719MXF\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day04Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward 0 131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day04Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward 1 131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472705v1 HG01928.pat chain GCA_018472705.1 HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 131 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472705.1\ parent hprcChainNetViewchain off\ priority 66\ shortLabel HG01928.pat\ subGroups view=chain sample=s066 population=amr subpop=pel hap=pat\ track chainHprcGCA_018472705v1\ type chain GCA_018472705.1\ wgEncodeRegDnaseUwHgfHotspot HGF Ht bigBed 6 + HGF gingival fibroblast DNaseI Hotspots from ENCODE 0 131 204 255 85 229 255 170 1 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HGF Ht\ subGroups view=b_Hot cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHgfHotspot\ type bigBed 6 +\ lungAlveoEpMerged Lung Alveolar Epithelium Merged bigWig Methylation Atlas: Lung Alveolar Epithelium Merged Samples 2 131 135 206 250 195 230 252 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoEpMerged.bw\ color 135,206,250\ longLabel Methylation Atlas: Lung Alveolar Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 131\ shortLabel Lung Alveolar Epithelium Merged\ subGroups cellType=Lung-Ep-Alveo dataType=Merged\ track lungAlveoEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF644VHX_ENCFF201UPO_ENCFF038BIZ_ENCFF670BZH ENCFF644VHX_ENCFF201UPO_ENCFF038BIZ_ENCFF670BZH bigBed 9 + 5 Tibial nerve, male adult (37 years): (1) cCREs 4 132 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF644VHX_ENCFF201UPO_ENCFF038BIZ_ENCFF670BZH.bb\ longLabel Tibial nerve, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 156\ shortLabel ENCFF644VHX_ENCFF201UPO_ENCFF038BIZ_ENCFF670BZH\ subGroups organ=nerve view=cCREs_view simpleBiosample=tibial_nerve-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF644VHX_ENCFF201UPO_ENCFF038BIZ_ENCFF670BZH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF042MFJ ENCSR000BGQ Signal bigWig GM12878 SPI1 ENCSR000BGQ signal 2 132 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/92ebc32b-a652-4d9c-8cf2-52ab4ddb1f34/ENCFF042MFJ.bigWig\ color 254,75,173\ longLabel GM12878 SPI1 ENCSR000BGQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGQ Signal\ track wgEncodeReg4TfChip_ENCFF042MFJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF595QEI ENCSR000DPD Peak bigBed 5 A549 H3K4me3 peak 4 132 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/c2a46d54-7d98-4173-8925-31c6ccccddea/ENCFF595QEI.bigBed\ color 255,0,0\ longLabel A549 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPD Peak\ track wgEncodeReg4Epigenetics_ENCFF595QEI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF093KRC ENCSR042GYH - strand bigWig Ovary tissue female adult (51 years) - strand total RNA-seq signal 2 132 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/8cf1e793-5495-4598-b224-b0ca4eb804bb/ENCFF093KRC.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR042GYH - strand\ track wgEncodeReg4RnaSeq_ENCFF093KRC\ type bigWig\ visibility full\ encTfChipPkENCFF720YMW GM12878 IRF4 narrowPeak Transcription Factor ChIP-seq Peaks of IRF4 in GM12878 from ENCODE 3 (ENCFF720YMW) 0 132 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF4 in GM12878 from ENCODE 3 (ENCFF720YMW)\ parent encTfChipPk off\ shortLabel GM12878 IRF4\ subGroups cellType=GM12878 factor=IRF4\ track encTfChipPkENCFF720YMW\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_rev Hes3-gfpCardiomyocyticInduction_Day04Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse 0 132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_rev Hes3-gfpCardiomyocyticInduction_Day04Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse 1 132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day04%2c%20biol_rep3.CNhs13728.13355-143E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day04, biol_rep3_CNhs13728_13355-143E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13355-143E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay04BiolRep3_CNhs13728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13355-143E7\ urlLabel FANTOM5 Details:\ netHprcGCA_018472705v1 HG01928.pat netAlign GCA_018472705.1 chainHprcGCA_018472705v1 HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chain Nets 1 132 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01928.pat HG01928.alt.pat.f1_v2 (May 2021 GCA_018472705.1_HG01928.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472705.1\ parent hprcChainNetViewnet off\ priority 66\ shortLabel HG01928.pat\ subGroups view=net sample=s066 population=amr subpop=pel hap=pat\ track netHprcGCA_018472705v1\ type netAlign GCA_018472705.1 chainHprcGCA_018472705v1\ lungAlveoEp0T1 Lung Alveolar - Epithelial - Z000000T1 bigWig Methylation Atlas: Lung Alveolar - Epithelial - Z000000T1 2 132 135 206 250 195 230 252 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoEp0T1.bw\ color 135,206,250\ longLabel Methylation Atlas: Lung Alveolar - Epithelial - Z000000T1\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 132\ shortLabel Lung Alveolar - Epithelial - Z000000T1\ subGroups cellType=Lung-Ep-Alveo dataType=Replicate\ track lungAlveoEp0T1\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwNhdfneoHotspot NHDF-neo Ht bigBed 6 + NHDF-neo dermal fibroblast, neonate DNaseI Hotspots from ENCODE 0 132 198 255 85 226 255 170 1 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NHDF-neo Ht\ subGroups view=b_Hot cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfneoHotspot\ type bigBed 6 +\ ENCFF857RXA_ENCFF756NMQ_ENCFF493AZX_ENCFF004ITE ENCFF857RXA_ENCFF756NMQ_ENCFF493AZX_ENCFF004ITE bigBed 9 + 5 Panc1: (1) cCREs 4 133 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF857RXA_ENCFF756NMQ_ENCFF493AZX_ENCFF004ITE.bb\ longLabel Panc1: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 120\ shortLabel ENCFF857RXA_ENCFF756NMQ_ENCFF493AZX_ENCFF004ITE\ subGroups organ=pancreas view=cCREs_view simpleBiosample=Panc1 biosampleType=cell_line donor=ENCDO000ABB dataType=typeCcres\ track ENCFF857RXA_ENCFF756NMQ_ENCFF493AZX_ENCFF004ITE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF285BQQ ENCSR000BGR Peak bigBed 5 GM12878 PBX3 peaks 4 133 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/eda40543-ba65-4944-b822-6f9b4b9eaba3/ENCFF285BQQ.bigBed\ labelFields none\ longLabel GM12878 PBX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF285BQQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF343IDC ENCSR000DPD Signal bigWig A549 H3K4me3 signal 2 133 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/9c584598-476b-4faa-bc5a-fbceca56abad/ENCFF343IDC.bigWig\ color 255,0,0\ longLabel A549 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPD Signal\ track wgEncodeReg4Epigenetics_ENCFF343IDC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF905NZB ENCSR045GTF + strand bigWig Lung tissue female adult (47 years) + strand total RNA-seq signal 2 133 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/726ac49a-412d-4fd3-97dc-278fd95a851e/ENCFF905NZB.bigWig\ color 130,163,45\ longLabel Lung tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR045GTF + strand\ track wgEncodeReg4RnaSeq_ENCFF905NZB\ type bigWig\ visibility full\ encTfChipPkENCFF843HDK GM12878 IRF5 narrowPeak Transcription Factor ChIP-seq Peaks of IRF5 in GM12878 from ENCODE 3 (ENCFF843HDK) 0 133 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF5 in GM12878 from ENCODE 3 (ENCFF843HDK)\ parent encTfChipPk off\ shortLabel GM12878 IRF5\ subGroups cellType=GM12878 factor=IRF5\ track encTfChipPkENCFF843HDK\ wgEncodeRegDnaseUwHaepicHotspot HAEpiC Ht bigBed 6 + HAEpiC amniotic epithelium (AEC) DNaseI Hotspots from ENCODE 0 133 189 255 85 222 255 170 1 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HAEpiC Ht\ subGroups view=b_Hot cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ track wgEncodeRegDnaseUwHaepicHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward 0 133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward 1 133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472845v1 HG01978.pat chain GCA_018472845.1 HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 133 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472845.1\ parent hprcChainNetViewchain off\ priority 67\ shortLabel HG01978.pat\ subGroups view=chain sample=s067 population=amr subpop=pel hap=pat\ track chainHprcGCA_018472845v1\ type chain GCA_018472845.1\ lungAlveoEp0VC Lung Alveolar - Epithelial - Z000000VC bigWig Methylation Atlas: Lung Alveolar - Epithelial - Z000000VC 2 133 135 206 250 195 230 252 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoEp0VC.bw\ color 135,206,250\ longLabel Methylation Atlas: Lung Alveolar - Epithelial - Z000000VC\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 133\ shortLabel Lung Alveolar - Epithelial - Z000000VC\ subGroups cellType=Lung-Ep-Alveo dataType=Replicate\ track lungAlveoEp0VC\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF647HDA_ENCFF530MCT_ENCFF370QKJ_ENCFF973VNM ENCFF647HDA_ENCFF530MCT_ENCFF370QKJ_ENCFF973VNM bigBed 9 + 5 Type B pancreatic cell, female embryo (5 days): (1) cCREs 4 134 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF647HDA_ENCFF530MCT_ENCFF370QKJ_ENCFF973VNM.bb\ longLabel Type B pancreatic cell, female embryo (5 days): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 162\ shortLabel ENCFF647HDA_ENCFF530MCT_ENCFF370QKJ_ENCFF973VNM\ subGroups organ=pancreas view=cCREs_view simpleBiosample=type_B_pancreatic_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF647HDA_ENCFF530MCT_ENCFF370QKJ_ENCFF973VNM\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF386ZNA ENCSR000BGR Signal bigWig GM12878 PBX3 ENCSR000BGR signal 2 134 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/27fb0f60-6b4c-4381-adbf-682413e53d23/ENCFF386ZNA.bigWig\ color 254,75,173\ longLabel GM12878 PBX3 ENCSR000BGR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGR Signal\ track wgEncodeReg4TfChip_ENCFF386ZNA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF034FVO ENCSR000DPF Peak bigBed 5 A549 CTCF peak 4 134 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/56221cda-b9b2-47df-92dc-46a5bb596629/ENCFF034FVO.bigBed\ color 0,176,240\ labelFields none\ longLabel A549 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPF Peak\ track wgEncodeReg4Epigenetics_ENCFF034FVO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF801HGQ ENCSR045GTF - strand bigWig Lung tissue female adult (47 years) - strand total RNA-seq signal 2 134 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/2ec192bb-0c7e-489c-8777-f1e0252110da/ENCFF801HGQ.bigWig\ color 130,163,45\ longLabel Lung tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR045GTF - strand\ track wgEncodeReg4RnaSeq_ENCFF801HGQ\ type bigWig\ visibility full\ encTfChipPkENCFF478XNA GM12878 JUNB narrowPeak Transcription Factor ChIP-seq Peaks of JUNB in GM12878 from ENCODE 3 (ENCFF478XNA) 0 134 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of JUNB in GM12878 from ENCODE 3 (ENCFF478XNA)\ parent encTfChipPk off\ shortLabel GM12878 JUNB\ subGroups cellType=GM12878 factor=JUNB\ track encTfChipPkENCFF478XNA\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse 0 134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse 1 134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep1.CNhs13657.13332-143C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep1_CNhs13657_13332-143C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13332-143C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep1_CNhs13657_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13332-143C2\ urlLabel FANTOM5 Details:\ netHprcGCA_018472845v1 HG01978.pat netAlign GCA_018472845.1 chainHprcGCA_018472845v1 HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chain Nets 1 134 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01978.pat HG01978.alt.pat.f1_v2 (May 2021 GCA_018472845.1_HG01978.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472845.1\ parent hprcChainNetViewnet off\ priority 67\ shortLabel HG01978.pat\ subGroups view=net sample=s067 population=amr subpop=pel hap=pat\ track netHprcGCA_018472845v1\ type netAlign GCA_018472845.1 chainHprcGCA_018472845v1\ lungAlveoEp0VE Lung Alveolar - Epithelial - Z000000VE bigWig Methylation Atlas: Lung Alveolar - Epithelial - Z000000VE 2 134 135 206 250 195 230 252 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungAlveoEp0VE.bw\ color 135,206,250\ longLabel Methylation Atlas: Lung Alveolar - Epithelial - Z000000VE\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 134\ shortLabel Lung Alveolar - Epithelial - Z000000VE\ subGroups cellType=Lung-Ep-Alveo dataType=Replicate\ track lungAlveoEp0VE\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwSkmcHotspot SKMC Ht bigBed 6 + SKMC skeletal muscle cell DNaseI Hotspots from ENCODE 0 134 182 255 85 218 255 170 1 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SKMC Ht\ subGroups view=b_Hot cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwSkmcHotspot\ type bigBed 6 +\ ENCFF865UWE_ENCFF165GJZ_ENCFF201DRD_ENCFF559SRW ENCFF865UWE_ENCFF165GJZ_ENCFF201DRD_ENCFF559SRW bigBed 9 + 5 Progenitor cell of endocrine pancreas, female embryo (5 days): (1) cCREs 4 135 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF865UWE_ENCFF165GJZ_ENCFF201DRD_ENCFF559SRW.bb\ longLabel Progenitor cell of endocrine pancreas, female embryo (5 days): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 131\ shortLabel ENCFF865UWE_ENCFF165GJZ_ENCFF201DRD_ENCFF559SRW\ subGroups organ=pancreas view=cCREs_view simpleBiosample=progenitor_cell_of_endocrine_pancreas-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCcres\ track ENCFF865UWE_ENCFF165GJZ_ENCFF201DRD_ENCFF559SRW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF746UKX ENCSR000BGS Peak bigBed 5 GM12878 TAF1 peaks 4 135 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/80cf716c-1a94-4c32-9b2d-66c435e30e2d/ENCFF746UKX.bigBed\ labelFields none\ longLabel GM12878 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF746UKX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF840GOE ENCSR000DPF Signal bigWig A549 CTCF signal 2 135 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/aa776fc8-8946-43e0-be9b-5c4f3f8eec80/ENCFF840GOE.bigWig\ color 0,176,240\ longLabel A549 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPF Signal\ track wgEncodeReg4Epigenetics_ENCFF840GOE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF652ISB ENCSR052FJA + strand bigWig Smooth muscle cell originated from H9 + strand total RNA-seq signal 2 135 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/03e35bee-2216-40d4-8095-72e0303acee2/ENCFF652ISB.bigWig\ color 137,135,170\ longLabel Smooth muscle cell originated from H9 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR052FJA + strand\ track wgEncodeReg4RnaSeq_ENCFF652ISB\ type bigWig\ visibility full\ encTfChipPkENCFF873DJD GM12878 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in GM12878 from ENCODE 3 (ENCFF873DJD) 0 135 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in GM12878 from ENCODE 3 (ENCFF873DJD)\ parent encTfChipPk off\ shortLabel GM12878 JUND\ subGroups cellType=GM12878 factor=JUND\ track encTfChipPkENCFF873DJD\ wgEncodeRegDnaseUwHbvsmcHotspot HBVSMC Ht bigBed 6 + HBVSMC brain vascular smooth muscle DNaseI Hotspots from ENCODE 0 135 176 255 85 215 255 170 1 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HBVSMC Ht\ subGroups view=b_Hot cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbvsmcHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward 0 135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward 1 135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018505845v1 HG03492.mat chain GCA_018505845.1 HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 135 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505845.1\ parent hprcChainNetViewchain off\ priority 89\ shortLabel HG03492.mat\ subGroups view=chain sample=s089 population=sas subpop=pjl hap=mat\ track chainHprcGCA_018505845v1\ type chain GCA_018505845.1\ lungPleura42B Lung - Pleura - Z0000042B bigWig Methylation Atlas: Lung - Pleura - Z0000042B 2 135 135 206 250 195 230 252 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/lungPleura42B.bw\ color 135,206,250\ longLabel Methylation Atlas: Lung - Pleura - Z0000042B\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 135\ shortLabel Lung - Pleura - Z0000042B\ subGroups cellType=Lung-Ep-Alveo dataType=Replicate\ track lungPleura42B\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwAg04449Hotspot AG04449 Ht bigBed 6 + AG04449 fetal skin fibroblast DNaseI Hotspots from ENCODE 0 136 152 255 85 203 255 170 1 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG04449 Ht\ subGroups view=b_Hot cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwAg04449Hotspot\ type bigBed 6 +\ breastBasalEpMerged Breast Basal Epithelium Merged bigWig Methylation Atlas: Breast Basal Epithelium Merged Samples 2 136 219 112 147 237 183 201 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastBasalEpMerged.bw\ color 219,112,147\ longLabel Methylation Atlas: Breast Basal Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 136\ shortLabel Breast Basal Epithelium Merged\ subGroups cellType=Breast-Basal-Ep dataType=Merged\ track breastBasalEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF213UEB_ENCFF682UWZ_ENCFF948MEI_ENCFF232BMJ ENCFF213UEB_ENCFF682UWZ_ENCFF948MEI_ENCFF232BMJ bigBed 9 + 5 Pancreas, female adult (61 years): (1) cCREs 4 136 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF213UEB_ENCFF682UWZ_ENCFF948MEI_ENCFF232BMJ.bb\ longLabel Pancreas, female adult (61 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 123\ shortLabel ENCFF213UEB_ENCFF682UWZ_ENCFF948MEI_ENCFF232BMJ\ subGroups organ=pancreas view=cCREs_view simpleBiosample=pancreas-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeCcres\ track ENCFF213UEB_ENCFF682UWZ_ENCFF948MEI_ENCFF232BMJ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF307JTI ENCSR000BGS Signal bigWig GM12878 TAF1 ENCSR000BGS signal 2 136 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/608b8c9a-0989-489f-8e79-187cdb459ad2/ENCFF307JTI.bigWig\ color 254,75,173\ longLabel GM12878 TAF1 ENCSR000BGS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGS Signal\ track wgEncodeReg4TfChip_ENCFF307JTI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF248MBD ENCSR000DPG Peak bigBed 5 AG04449 CTCF peak 4 136 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/269a50f6-3589-40a3-8fbe-a588f5ef1c21/ENCFF248MBD.bigBed\ color 0,176,240\ labelFields none\ longLabel AG04449 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPG Peak\ track wgEncodeReg4Epigenetics_ENCFF248MBD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF283ANB ENCSR052FJA - strand bigWig Smooth muscle cell originated from H9 - strand total RNA-seq signal 2 136 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/9ae2cdee-5556-4d16-9f81-6786722f31e3/ENCFF283ANB.bigWig\ color 137,135,170\ longLabel Smooth muscle cell originated from H9 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR052FJA - strand\ track wgEncodeReg4RnaSeq_ENCFF283ANB\ type bigWig\ visibility full\ encTfChipPkENCFF710ROZ GM12878 KAT2A narrowPeak Transcription Factor ChIP-seq Peaks of KAT2A in GM12878 from ENCODE 3 (ENCFF710ROZ) 0 136 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of KAT2A in GM12878 from ENCODE 3 (ENCFF710ROZ)\ parent encTfChipPk off\ shortLabel GM12878 KAT2A\ subGroups cellType=GM12878 factor=KAT2A\ track encTfChipPkENCFF710ROZ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse 0 136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse 1 136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep2.CNhs13717.13344-143D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep2_CNhs13717_13344-143D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13344-143D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep2_CNhs13717_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13344-143D5\ urlLabel FANTOM5 Details:\ netHprcGCA_018505845v1 HG03492.mat netAlign GCA_018505845.1 chainHprcGCA_018505845v1 HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chain Nets 1 136 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03492.mat HG03492.pri.mat.f1_v2 (May 2021 GCA_018505845.1_HG03492.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505845.1\ parent hprcChainNetViewnet off\ priority 89\ shortLabel HG03492.mat\ subGroups view=net sample=s089 population=sas subpop=pjl hap=mat\ track netHprcGCA_018505845v1\ type netAlign GCA_018505845.1 chainHprcGCA_018505845v1\ wgEncodeRegDnaseUwAg04450Hotspot AG04450 Ht bigBed 6 + AG04450 fetal lung fibroblast DNaseI Hotspots from ENCODE 0 137 144 255 85 199 255 170 1 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel AG04450 Ht\ subGroups view=b_Hot cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwAg04450Hotspot\ type bigBed 6 +\ breastBasalEp0V6 Breast Basal - Epithelial - Z000000V6 bigWig Methylation Atlas: Breast Basal - Epithelial - Z000000V6 2 137 219 112 147 237 183 201 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastBasalEp0V6.bw\ color 219,112,147\ longLabel Methylation Atlas: Breast Basal - Epithelial - Z000000V6\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 137\ shortLabel Breast Basal - Epithelial - Z000000V6\ subGroups cellType=Breast-Basal-Ep dataType=Replicate\ track breastBasalEp0V6\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF225DKL_ENCFF127LVQ_ENCFF853NJX_ENCFF893BCC ENCFF225DKL_ENCFF127LVQ_ENCFF853NJX_ENCFF893BCC bigBed 9 + 5 Body of pancreas, female adult (51 years): (1) cCREs 4 137 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF225DKL_ENCFF127LVQ_ENCFF853NJX_ENCFF893BCC.bb\ longLabel Body of pancreas, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 13\ shortLabel ENCFF225DKL_ENCFF127LVQ_ENCFF853NJX_ENCFF893BCC\ subGroups organ=pancreas view=cCREs_view simpleBiosample=body_of_pancreas-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF225DKL_ENCFF127LVQ_ENCFF853NJX_ENCFF893BCC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF954REE ENCSR000BGT Peak bigBed 5 GM12878 BATF peaks 4 137 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/c91962a1-57b9-4594-a987-4787583cd0e0/ENCFF954REE.bigBed\ labelFields none\ longLabel GM12878 BATF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF954REE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF526IVK ENCSR000DPG Signal bigWig AG04449 CTCF signal 2 137 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7134f2ac-c64c-40d5-8949-0a0a3e65ea62/ENCFF526IVK.bigWig\ color 0,176,240\ longLabel AG04449 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPG Signal\ track wgEncodeReg4Epigenetics_ENCFF526IVK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF196HWN ENCSR052LON + strand bigWig Dorsolateral prefrontal cortex tissue male adult (71 years) + strand total RNA-seq signal 2 137 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/96d4b700-4d1d-4420-8a74-72a12eafeae2/ENCFF196HWN.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (71 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR052LON + strand\ track wgEncodeReg4RnaSeq_ENCFF196HWN\ type bigWig\ visibility full\ encTfChipPkENCFF799KZP GM12878 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in GM12878 from ENCODE 3 (ENCFF799KZP) 0 137 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in GM12878 from ENCODE 3 (ENCFF799KZP)\ parent encTfChipPk off\ shortLabel GM12878 KDM1A\ subGroups cellType=GM12878 factor=KDM1A\ track encTfChipPkENCFF799KZP\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day05Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward 0 137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day05Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward 1 137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018505835v1 HG03492.pat chain GCA_018505835.1 HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 137 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018505835.1\ parent hprcChainNetViewchain off\ priority 88\ shortLabel HG03492.pat\ subGroups view=chain sample=s088 population=sas subpop=pjl hap=pat\ track chainHprcGCA_018505835v1\ type chain GCA_018505835.1\ breastBasalEp0VG Breast Basal - Epithelial - Z000000VG bigWig Methylation Atlas: Breast Basal - Epithelial - Z000000VG 2 138 219 112 147 237 183 201 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastBasalEp0VG.bw\ color 219,112,147\ longLabel Methylation Atlas: Breast Basal - Epithelial - Z000000VG\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 138\ shortLabel Breast Basal - Epithelial - Z000000VG\ subGroups cellType=Breast-Basal-Ep dataType=Replicate\ track breastBasalEp0VG\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF649PLC_ENCFF138VRG_ENCFF940UMR_ENCFF078UTK ENCFF649PLC_ENCFF138VRG_ENCFF940UMR_ENCFF078UTK bigBed 9 + 5 Body of pancreas, male adult (54 years): (1) cCREs 4 138 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF649PLC_ENCFF138VRG_ENCFF940UMR_ENCFF078UTK.bb\ longLabel Body of pancreas, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 15\ shortLabel ENCFF649PLC_ENCFF138VRG_ENCFF940UMR_ENCFF078UTK\ subGroups organ=pancreas view=cCREs_view simpleBiosample=body_of_pancreas-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF649PLC_ENCFF138VRG_ENCFF940UMR_ENCFF078UTK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF013ZCI ENCSR000BGT Signal bigWig GM12878 BATF ENCSR000BGT signal 2 138 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/bbeb8af7-eac0-432e-95f8-74bbd53e6580/ENCFF013ZCI.bigWig\ color 254,75,173\ longLabel GM12878 BATF ENCSR000BGT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGT Signal\ track wgEncodeReg4TfChip_ENCFF013ZCI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF121QSM ENCSR000DPI Peak bigBed 5 AG04449 H3K4me3 peak 4 138 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/b1dc1e79-ff50-4174-a88a-ca374a998063/ENCFF121QSM.bigBed\ color 255,0,0\ longLabel AG04449 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPI Peak\ track wgEncodeReg4Epigenetics_ENCFF121QSM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF566YDS ENCSR052LON - strand bigWig Dorsolateral prefrontal cortex tissue male adult (71 years) - strand total RNA-seq signal 2 138 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/8c9978f8-1f99-4ddf-aaf9-514b229925ad/ENCFF566YDS.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (71 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR052LON - strand\ track wgEncodeReg4RnaSeq_ENCFF566YDS\ type bigWig\ visibility full\ encTfChipPkENCFF417WPC GM12878 KLF5 narrowPeak Transcription Factor ChIP-seq Peaks of KLF5 in GM12878 from ENCODE 3 (ENCFF417WPC) 0 138 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of KLF5 in GM12878 from ENCODE 3 (ENCFF417WPC)\ parent encTfChipPk off\ shortLabel GM12878 KLF5\ subGroups cellType=GM12878 factor=KLF5\ track encTfChipPkENCFF417WPC\ wgEncodeRegDnaseUwHahHotspot HA-h Ht bigBed 6 + HA-h hippocampal astrocyte DNaseI Hotspots from ENCODE 0 138 122 255 85 188 255 170 1 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HA-h Ht\ subGroups view=b_Hot cellType=HA-h treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHahHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_rev Hes3-gfpCardiomyocyticInduction_Day05Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse 0 138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_rev Hes3-gfpCardiomyocyticInduction_Day05Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse 1 138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day05%2c%20biol_rep3.CNhs13729.13356-143E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day05, biol_rep3_CNhs13729_13356-143E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13356-143E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day05Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay05BiolRep3_CNhs13729_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13356-143E8\ urlLabel FANTOM5 Details:\ netHprcGCA_018505835v1 HG03492.pat netAlign GCA_018505835.1 chainHprcGCA_018505835v1 HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chain Nets 1 138 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG03492.pat HG03492.alt.pat.f1_v2 (May 2021 GCA_018505835.1_HG03492.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018505835.1\ parent hprcChainNetViewnet off\ priority 88\ shortLabel HG03492.pat\ subGroups view=net sample=s088 population=sas subpop=pjl hap=pat\ track netHprcGCA_018505835v1\ type netAlign GCA_018505835.1 chainHprcGCA_018505835v1\ breastBasalEp0VL Breast Basal - Epithelial - Z000000VL bigWig Methylation Atlas: Breast Basal - Epithelial - Z000000VL 2 139 219 112 147 237 183 201 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastBasalEp0VL.bw\ color 219,112,147\ longLabel Methylation Atlas: Breast Basal - Epithelial - Z000000VL\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 139\ shortLabel Breast Basal - Epithelial - Z000000VL\ subGroups cellType=Breast-Basal-Ep dataType=Replicate\ track breastBasalEp0VL\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF349ZMO_ENCFF849YNY_ENCFF827CBM_ENCFF521NYK ENCFF349ZMO_ENCFF849YNY_ENCFF827CBM_ENCFF521NYK bigBed 9 + 5 Pancreas, female child (16 years): (1) cCREs 4 139 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF349ZMO_ENCFF849YNY_ENCFF827CBM_ENCFF521NYK.bb\ longLabel Pancreas, female child (16 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 124\ shortLabel ENCFF349ZMO_ENCFF849YNY_ENCFF827CBM_ENCFF521NYK\ subGroups organ=pancreas view=cCREs_view simpleBiosample=pancreas-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeCcres\ track ENCFF349ZMO_ENCFF849YNY_ENCFF827CBM_ENCFF521NYK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF813OXE ENCSR000BGU Peak bigBed 5 GM12878 EBF1 peaks 4 139 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/32521618-cb57-4ca1-bea5-04aed89d6856/ENCFF813OXE.bigBed\ labelFields none\ longLabel GM12878 EBF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF813OXE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF986AGK ENCSR000DPI Signal bigWig AG04449 H3K4me3 signal 2 139 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/976e1a04-e194-495e-a2b5-3ba49c22eae0/ENCFF986AGK.bigWig\ color 255,0,0\ longLabel AG04449 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPI Signal\ track wgEncodeReg4Epigenetics_ENCFF986AGK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF978IZK ENCSR052SDT + strand bigWig Activated CD4-positive, alpha-beta T cell male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days + strand total RNA-seq signal 2 139 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/9009f838-133d-42ce-80f7-07bb25d3bf75/ENCFF978IZK.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR052SDT + strand\ track wgEncodeReg4RnaSeq_ENCFF978IZK\ type bigWig\ visibility full\ encTfChipPkENCFF186AWV GM12878 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in GM12878 from ENCODE 3 (ENCFF186AWV) 0 139 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in GM12878 from ENCODE 3 (ENCFF186AWV)\ parent encTfChipPk off\ shortLabel GM12878 MAFK\ subGroups cellType=GM12878 factor=MAFK\ track encTfChipPkENCFF186AWV\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward 0 139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward 1 139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471085v1 HG01175.mat chain GCA_018471085.1 HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 139 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471085.1\ parent hprcChainNetViewchain off\ priority 47\ shortLabel HG01175.mat\ subGroups view=chain sample=s047 population=amr subpop=pur hap=mat\ track chainHprcGCA_018471085v1\ type chain GCA_018471085.1\ wgEncodeRegDnaseUwM059jHotspot M059J Ht bigBed 6 + M059J glioblastoma cell line DNaseI Hotspots from ENCODE 0 139 96 255 85 175 255 170 1 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel M059J Ht\ subGroups view=b_Hot cellType=M059J treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwM059jHotspot\ type bigBed 6 +\ breastBasalEp43E Breast Basal - Epithelial - Z0000043E bigWig Methylation Atlas: Breast Basal - Epithelial - Z0000043E 2 140 219 112 147 237 183 201 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastBasalEp43E.bw\ color 219,112,147\ longLabel Methylation Atlas: Breast Basal - Epithelial - Z0000043E\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 140\ shortLabel Breast Basal - Epithelial - Z0000043E\ subGroups cellType=Breast-Basal-Ep dataType=Replicate\ track breastBasalEp43E\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF330ZGD_ENCFF236JWD_ENCFF859IVY_ENCFF890FKH ENCFF330ZGD_ENCFF236JWD_ENCFF859IVY_ENCFF890FKH bigBed 9 + 5 Pancreas, female adult (41 years): (1) cCREs 4 140 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF330ZGD_ENCFF236JWD_ENCFF859IVY_ENCFF890FKH.bb\ longLabel Pancreas, female adult (41 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 121\ shortLabel ENCFF330ZGD_ENCFF236JWD_ENCFF859IVY_ENCFF890FKH\ subGroups organ=pancreas view=cCREs_view simpleBiosample=pancreas-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCcres\ track ENCFF330ZGD_ENCFF236JWD_ENCFF859IVY_ENCFF890FKH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF696PUH ENCSR000BGU Signal bigWig GM12878 EBF1 ENCSR000BGU signal 2 140 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/4778b877-92f8-4b6d-a90c-3751703ede71/ENCFF696PUH.bigWig\ color 254,75,173\ longLabel GM12878 EBF1 ENCSR000BGU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGU Signal\ track wgEncodeReg4TfChip_ENCFF696PUH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF603QJQ ENCSR000DPL Peak bigBed 5 AG04450 H3K27ac peak 4 140 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/420c7e4e-16c5-4115-bf5d-18c7ebb89692/ENCFF603QJQ.bigBed\ color 181,145,0\ longLabel AG04450 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPL Peak\ track wgEncodeReg4Epigenetics_ENCFF603QJQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF730JXD ENCSR052SDT - strand bigWig Activated CD4-positive, alpha-beta T cell male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days - strand total RNA-seq signal 2 140 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/134085b5-88f3-425d-a5be-7d39666c9aa6/ENCFF730JXD.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (35 years) treated with 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 24 hours, anti-CD3 and anti-CD28 coated beads for 14 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR052SDT - strand\ track wgEncodeReg4RnaSeq_ENCFF730JXD\ type bigWig\ visibility full\ encTfChipPkENCFF270NAL GM12878 MAX narrowPeak Transcription Factor ChIP-seq Peaks of MAX in GM12878 from ENCODE 3 (ENCFF270NAL) 0 140 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MAX in GM12878 from ENCODE 3 (ENCFF270NAL)\ parent encTfChipPk off\ shortLabel GM12878 MAX\ subGroups cellType=GM12878 factor=MAX\ track encTfChipPkENCFF270NAL\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse 0 140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse 1 140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep1.CNhs13658.13333-143C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep1_CNhs13658_13333-143C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13333-143C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep1_CNhs13658_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13333-143C3\ urlLabel FANTOM5 Details:\ netHprcGCA_018471085v1 HG01175.mat netAlign GCA_018471085.1 chainHprcGCA_018471085v1 HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chain Nets 1 140 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01175.mat HG01175.pri.mat.f1_v2 (May 2021 GCA_018471085.1_HG01175.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471085.1\ parent hprcChainNetViewnet off\ priority 47\ shortLabel HG01175.mat\ subGroups view=net sample=s047 population=amr subpop=pur hap=mat\ track netHprcGCA_018471085v1\ type netAlign GCA_018471085.1 chainHprcGCA_018471085v1\ wgEncodeRegDnaseUwRpmi7951Hotspot RPMI-7951 Ht bigBed 6 + RPMI-7951 melanoma cell line DNaseI Hotspots from ENCODE 0 140 85 255 90 170 255 172 1 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel RPMI-7951 Ht\ subGroups view=b_Hot cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ track wgEncodeRegDnaseUwRpmi7951Hotspot\ type bigBed 6 +\ breastLuminalEpMerged Breast Luminal Epithelium Merged bigWig Methylation Atlas: Breast Luminal Epithelium Merged Samples 2 141 255 182 193 255 218 224 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastLuminalEpMerged.bw\ color 255,182,193\ longLabel Methylation Atlas: Breast Luminal Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 141\ shortLabel Breast Luminal Epithelium Merged\ subGroups cellType=Breast-Luminal-Ep dataType=Merged\ track breastLuminalEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF087WEP_ENCFF285STS_ENCFF989SFZ_ENCFF885ZLN ENCFF087WEP_ENCFF285STS_ENCFF989SFZ_ENCFF885ZLN bigBed 9 + 5 Body of pancreas, male adult (37 years): (1) cCREs 4 141 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF087WEP_ENCFF285STS_ENCFF989SFZ_ENCFF885ZLN.bb\ longLabel Body of pancreas, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 14\ shortLabel ENCFF087WEP_ENCFF285STS_ENCFF989SFZ_ENCFF885ZLN\ subGroups organ=pancreas view=cCREs_view simpleBiosample=body_of_pancreas-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF087WEP_ENCFF285STS_ENCFF989SFZ_ENCFF885ZLN\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF410ORC ENCSR000BGW Peak bigBed 5 K562 SPI1 peaks 4 141 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/93cd2f0d-a9a1-4c42-9d25-4d57bfb53390/ENCFF410ORC.bigBed\ labelFields none\ longLabel K562 SPI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF410ORC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF389RGR ENCSR000DPL Signal bigWig AG04450 H3K27ac signal 2 141 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/b08b9426-a082-488e-ac0b-9ace93f5da56/ENCFF389RGR.bigWig\ color 181,145,0\ longLabel AG04450 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPL Signal\ track wgEncodeReg4Epigenetics_ENCFF389RGR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF035GJD ENCSR061HMO + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 141 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/2485311a-cb85-4a0c-8c01-06cd796e58cd/ENCFF035GJD.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR061HMO + strand\ track wgEncodeReg4RnaSeq_ENCFF035GJD\ type bigWig\ visibility full\ encTfChipPkENCFF958GXF GM12878 MEF2A narrowPeak Transcription Factor ChIP-seq Peaks of MEF2A in GM12878 from ENCODE 3 (ENCFF958GXF) 0 141 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MEF2A in GM12878 from ENCODE 3 (ENCFF958GXF)\ parent encTfChipPk off\ shortLabel GM12878 MEF2A\ subGroups cellType=GM12878 factor=MEF2A\ track encTfChipPkENCFF958GXF\ wgEncodeRegDnaseUwHaspHotspot HA-sp Ht bigBed 6 + HA-sp spinal cord astrocyte DNaseI Hotspots from ENCODE 0 141 85 255 124 170 255 189 1 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HA-sp Ht\ subGroups view=b_Hot cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ track wgEncodeRegDnaseUwHaspHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward 0 141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward 1 141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471095v1 HG00741.mat chain GCA_018471095.1 HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 141 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471095.1\ parent hprcChainNetViewchain off\ priority 48\ shortLabel HG00741.mat\ subGroups view=chain sample=s048 population=amr subpop=pur hap=mat\ track chainHprcGCA_018471095v1\ type chain GCA_018471095.1\ breastLumEp0V2 Breast Luminal - Epithelial - Z000000V2 bigWig Methylation Atlas: Breast Luminal - Epithelial - Z000000V2 2 142 255 182 193 255 218 224 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastLumEp0V2.bw\ color 255,182,193\ longLabel Methylation Atlas: Breast Luminal - Epithelial - Z000000V2\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 142\ shortLabel Breast Luminal - Epithelial - Z000000V2\ subGroups cellType=Breast-Luminal-Ep dataType=Replicate\ track breastLumEp0V2\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF876OBV_ENCFF083ENU_ENCFF306RJQ_ENCFF297EQI ENCFF876OBV_ENCFF083ENU_ENCFF306RJQ_ENCFF297EQI bigBed 9 + 5 Pancreas, female adult (59 years): (1) cCREs 4 142 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF876OBV_ENCFF083ENU_ENCFF306RJQ_ENCFF297EQI.bb\ longLabel Pancreas, female adult (59 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 122\ shortLabel ENCFF876OBV_ENCFF083ENU_ENCFF306RJQ_ENCFF297EQI\ subGroups organ=pancreas view=cCREs_view simpleBiosample=pancreas-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCcres\ track ENCFF876OBV_ENCFF083ENU_ENCFF306RJQ_ENCFF297EQI\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF216QNX ENCSR000BGW Signal bigWig K562 SPI1 ENCSR000BGW signal 2 142 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/8b184e59-7840-4d76-9cb8-91e3f7fdbb3c/ENCFF216QNX.bigWig\ color 254,75,173\ longLabel K562 SPI1 ENCSR000BGW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGW Signal\ track wgEncodeReg4TfChip_ENCFF216QNX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF116DJL ENCSR000DPM Peak bigBed 5 AG04450 CTCF peak 4 142 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/aff4e966-a92a-4097-a3b5-29ff5e083a60/ENCFF116DJL.bigBed\ color 0,176,240\ labelFields none\ longLabel AG04450 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPM Peak\ track wgEncodeReg4Epigenetics_ENCFF116DJL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF707WMO ENCSR061HMO - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 142 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/ac348b51-f0b9-47d5-806c-a3f3af55af8e/ENCFF707WMO.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR061HMO - strand\ track wgEncodeReg4RnaSeq_ENCFF707WMO\ type bigWig\ visibility full\ encTfChipPkENCFF623FAW GM12878 MEF2B narrowPeak Transcription Factor ChIP-seq Peaks of MEF2B in GM12878 from ENCODE 3 (ENCFF623FAW) 0 142 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MEF2B in GM12878 from ENCODE 3 (ENCFF623FAW)\ parent encTfChipPk off\ shortLabel GM12878 MEF2B\ subGroups cellType=GM12878 factor=MEF2B\ track encTfChipPkENCFF623FAW\ wgEncodeRegDnaseUwHcfaaHotspot HCFaa Ht bigBed 6 + HCFaa cardiac fibroblast DNaseI Hotspots from ENCODE 0 142 85 255 150 170 255 202 1 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HCFaa Ht\ subGroups view=b_Hot cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfaaHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse 0 142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse 1 142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep2.CNhs13718.13345-143D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep2_CNhs13718_13345-143D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13345-143D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep2_CNhs13718_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13345-143D6\ urlLabel FANTOM5 Details:\ netHprcGCA_018471095v1 HG00741.mat netAlign GCA_018471095.1 chainHprcGCA_018471095v1 HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chain Nets 1 142 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00741.mat HG00741.pri.mat.f1_v2 (May 2021 GCA_018471095.1_HG00741.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471095.1\ parent hprcChainNetViewnet off\ priority 48\ shortLabel HG00741.mat\ subGroups view=net sample=s048 population=amr subpop=pur hap=mat\ track netHprcGCA_018471095v1\ type netAlign GCA_018471095.1 chainHprcGCA_018471095v1\ breastLumEp0VJ Breast Luminal - Epithelial - Z000000VJ bigWig Methylation Atlas: Breast Luminal - Epithelial - Z000000VJ 2 143 255 182 193 255 218 224 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastLumEp0VJ.bw\ color 255,182,193\ longLabel Methylation Atlas: Breast Luminal - Epithelial - Z000000VJ\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 143\ shortLabel Breast Luminal - Epithelial - Z000000VJ\ subGroups cellType=Breast-Luminal-Ep dataType=Replicate\ track breastLumEp0VJ\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF623ZIV_ENCFF995LLA_ENCFF426TLD_ENCFF406SZM ENCFF623ZIV_ENCFF995LLA_ENCFF426TLD_ENCFF406SZM bigBed 9 + 5 HFFc6: (1) cCREs 4 143 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF623ZIV_ENCFF995LLA_ENCFF426TLD_ENCFF406SZM.bb\ longLabel HFFc6: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 55\ shortLabel ENCFF623ZIV_ENCFF995LLA_ENCFF426TLD_ENCFF406SZM\ subGroups organ=penis view=cCREs_view simpleBiosample=HFFc6 biosampleType=cell_line donor=ENCDO737WWC dataType=typeCcres\ track ENCFF623ZIV_ENCFF995LLA_ENCFF426TLD_ENCFF406SZM\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF472MWE ENCSR000BGX Peak bigBed 5 K562 SIX5 peaks 4 143 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/1e61e704-87fc-4b44-88e2-79a009cd32f0/ENCFF472MWE.bigBed\ labelFields none\ longLabel K562 SIX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF472MWE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF766VDL ENCSR000DPM Signal bigWig AG04450 CTCF signal 2 143 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/87e5bf94-6d70-48e4-84e8-1b6e88ba5370/ENCFF766VDL.bigWig\ color 0,176,240\ longLabel AG04450 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPM Signal\ track wgEncodeReg4Epigenetics_ENCFF766VDL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF381TII ENCSR061RDC + strand bigWig Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal 2 143 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/285ea24f-ffcb-4eb3-9369-9dd46f580b65/ENCFF381TII.bigWig\ color 155,155,18\ longLabel Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR061RDC + strand\ track wgEncodeReg4RnaSeq_ENCFF381TII\ type bigWig\ visibility full\ encTfChipPkENCFF830BRO GM12878 MEF2C narrowPeak Transcription Factor ChIP-seq Peaks of MEF2C in GM12878 from ENCODE 3 (ENCFF830BRO) 0 143 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MEF2C in GM12878 from ENCODE 3 (ENCFF830BRO)\ parent encTfChipPk off\ shortLabel GM12878 MEF2C\ subGroups cellType=GM12878 factor=MEF2C\ track encTfChipPkENCFF830BRO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day06Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward 0 143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day06Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward 1 143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471345v1 HG01106.mat chain GCA_018471345.1 HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 143 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471345.1\ parent hprcChainNetViewchain off\ priority 50\ shortLabel HG01106.mat\ subGroups view=chain sample=s050 population=amr subpop=pur hap=mat\ track chainHprcGCA_018471345v1\ type chain GCA_018471345.1\ wgEncodeRegDnaseUwWi384ohtam20nm72hrHotspot WI-38 40HTAM Ht bigBed 6 + WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Hotspots from ENCODE 0 143 85 255 171 170 255 213 1 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel WI-38 40HTAM Ht\ subGroups view=b_Hot cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrHotspot\ type bigBed 6 +\ breastLumEp0VN Breast Luminal - Epithelial - Z000000VN bigWig Methylation Atlas: Breast Luminal - Epithelial - Z000000VN 2 144 255 182 193 255 218 224 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/breastLumEp0VN.bw\ color 255,182,193\ longLabel Methylation Atlas: Breast Luminal - Epithelial - Z000000VN\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 144\ shortLabel Breast Luminal - Epithelial - Z000000VN\ subGroups cellType=Breast-Luminal-Ep dataType=Replicate\ track breastLumEp0VN\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF599UKS_ENCFF319OET_ENCFF537PUA_ENCFF756ESH ENCFF599UKS_ENCFF319OET_ENCFF537PUA_ENCFF756ESH bigBed 9 + 5 PC-3: (1) cCREs 4 144 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF599UKS_ENCFF319OET_ENCFF537PUA_ENCFF756ESH.bb\ longLabel PC-3: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 125\ shortLabel ENCFF599UKS_ENCFF319OET_ENCFF537PUA_ENCFF756ESH\ subGroups organ=prostate view=cCREs_view simpleBiosample=PC-3 biosampleType=cell_line donor=ENCDO349AAA dataType=typeCcres\ track ENCFF599UKS_ENCFF319OET_ENCFF537PUA_ENCFF756ESH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF401KKQ ENCSR000BGX Signal bigWig K562 SIX5 ENCSR000BGX signal 2 144 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/f0034006-11f5-4cbb-a47c-54e19afceded/ENCFF401KKQ.bigWig\ color 254,75,173\ longLabel K562 SIX5 ENCSR000BGX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGX Signal\ track wgEncodeReg4TfChip_ENCFF401KKQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF037XYL ENCSR000DPO Peak bigBed 5 AG04450 H3K4me3 peak 4 144 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/857776db-8396-4116-a86b-98ac4d60fbd0/ENCFF037XYL.bigBed\ color 255,0,0\ longLabel AG04450 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPO Peak\ track wgEncodeReg4Epigenetics_ENCFF037XYL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF409FXN ENCSR061RDC - strand bigWig Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal 2 144 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/c63b9167-56aa-4d30-917c-86af455080bc/ENCFF409FXN.bigWig\ color 155,155,18\ longLabel Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR061RDC - strand\ track wgEncodeReg4RnaSeq_ENCFF409FXN\ type bigWig\ visibility full\ encTfChipPkENCFF125MEN GM12878 MLLT1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in GM12878 from ENCODE 3 (ENCFF125MEN) 0 144 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in GM12878 from ENCODE 3 (ENCFF125MEN)\ parent encTfChipPk off\ shortLabel GM12878 MLLT1\ subGroups cellType=GM12878 factor=MLLT1\ track encTfChipPkENCFF125MEN\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_rev Hes3-gfpCardiomyocyticInduction_Day06Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse 0 144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_rev Hes3-gfpCardiomyocyticInduction_Day06Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse 1 144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day06%2c%20biol_rep3.CNhs13730.13357-143E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day06, biol_rep3_CNhs13730_13357-143E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13357-143E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay06BiolRep3_CNhs13730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13357-143E9\ urlLabel FANTOM5 Details:\ netHprcGCA_018471345v1 HG01106.mat netAlign GCA_018471345.1 chainHprcGCA_018471345v1 HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chain Nets 1 144 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01106.mat HG01106.pri.mat.f1_v2 (May 2021 GCA_018471345.1_HG01106.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471345.1\ parent hprcChainNetViewnet off\ priority 50\ shortLabel HG01106.mat\ subGroups view=net sample=s050 population=amr subpop=pur hap=mat\ track netHprcGCA_018471345v1\ type netAlign GCA_018471345.1 chainHprcGCA_018471345v1\ wgEncodeRegDnaseUwNhdfadHotspot NHDF-Ad Ht bigBed 6 + NHDF-Ad dermal fibroblast DNaseI Hotspots from ENCODE 0 144 85 255 180 170 255 217 1 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NHDF-Ad Ht\ subGroups view=b_Hot cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfadHotspot\ type bigBed 6 +\ cactus241wayBM Cactus Align bigMaf Cactus Alignments of Zoonomia 241 Placental Mammals 3 145 0 10 100 0 90 10 0 0 0 compGeno 1 altColor 0,90,10\ bigDataUrl https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241way.bigMaf\ color 0, 10, 100\ configurable on\ frames https://hgdownload.soe.ucsc.edu/goldenPath/hg38/cactus241way/cactus241wayFrames.bb\ group compGeno\ itemFirstCharCase noChange\ longLabel Cactus Alignments of Zoonomia 241 Placental Mammals\ parent cons241wayViewalign on\ priority 145\ sGroup_Carnivore Neomonachus_schauinslandi Leptonychotes_weddellii Mirounga_angustirostris odoRosDiv1 Zalophus_californianus Ursus_maritimus Ailuropoda_melanoleuca Panthera_tigris Panthera_onca Panthera_pardus Acinonyx_jubatus Puma_concolor Felis_nigripes Cryptoprocta_ferox Felis_catus Ailurus_fulgens Lycaon_pictus Canis_lupus_familiaris Canis_lupus Vulpes_lagopus Hyaena_hyaena Paradoxurus_hermaphroditus Mellivora_capensis Enhydra_lutris Pteronura_brasiliensis Helogale_parvula Mungos_mungo Spilogale_gracilis Suricata_suricatta Mustela_putorius\ sGroup_Cetartiodactyla Eubalaena_japonica Eschrichtius_robustus Balaenoptera_bonaerensis Balaenoptera_acutorostrata Ziphius_cavirostris Monodon_monoceros Delphinapterus_leucas Mesoplodon_bidens orcOrc1 Lipotes_vexillifer Tursiops_truncatus Neophocaena_asiaeorientalis Phocoena_phocoena Platanista_gangetica Inia_geoffrensis Kogia_breviceps Hippopotamus_amphibius Camelus_dromedarius Camelus_ferus Camelus_bactrianus Vicugna_pacos Sus_scrofa Giraffa_tippelskirchi Okapia_johnstoni Elaphurus_davidianus Catagonus_wagneri Bubalus_bubalis Rangifer_tarandus Odocoileus_virginianus Bison_bison bosMut1 Bos_indicus Bos_taurus Moschus_moschiferus Pantholops_hodgsonii Beatragus_hunteri Ovis_canadensis Ovis_aries Antilocapra_americana Hemitragus_hylocrius Ammotragus_lervia Capra_hircus Capra_aegagrus Saiga_tatarica Tragulus_javanicus\ sGroup_Chiroptera Hipposideros_armiger Rhinolophus_sinicus pteAle1 Pteropus_vampyrus Tadarida_brasiliensis Hipposideros_galeritus eidHel1 Miniopterus_schreibersii Miniopterus_natalensis Macroglossus_sobrinus Rousettus_aegyptiacus Eptesicus_fuscus myoBra1 myoLuc2 Myotis_myotis myoDav1 Mormoops_blainvillei Megaderma_lyra ptePar1 Desmodus_rotundus Craseonycteris_thonglongyai Anoura_caudifer Murina_feae Tonatia_saurophila Carollia_perspicillata Pipistrellus_pipistrellus Micronycteris_hirsuta Noctilio_leporinus Lasiurus_borealis Artibeus_jamaicensis\ sGroup_Mammals Galeopterus_variegatus Ceratotherium_simum_cottoni Ceratotherium_simum Diceros_bicornis Dicerorhinus_sumatrensis Tapirus_indicus Tapirus_terrestris Equus_asinus Equus_przewalskii Equus_caballus Tupaia_tana tupChi1 Trichechus_manatus Loxodonta_africana Manis_pentadactyla Manis_javanica Choloepus_didactylus Choloepus_hoffmanni Tolypeutes_matacus Chaetophractus_vellerosus Oryctolagus_cuniculus Lepus_americanus Orycteropus_afer Dasypus_novemcinctus Myrmecophaga_tridactyla Tamandua_tetradactyla Solenodon_paradoxus Scalopus_aquaticus Procavia_capensis Heterohyrax_brucei Chrysochloris_asiatica Uropsilus_gracilis Condylura_cristata Ochotona_princeps Echinops_telfairi eleEdw1 Erinaceus_europaeus sorAra2 Microgale_talazaci Crocidura_indochinensis\ sGroup_Primate Pan_troglodytes Pan_paniscus Gorilla_gorilla Pongo_abelii nomLeu3 Macaca_fascicularis Macaca_mulatta Papio_anubis Macaca_nemestrina Mandrillus_leucophaeus Nasalis_larvatus Erythrocebus_patas Cercopithecus_neglectus Chlorocebus_sabaeus Semnopithecus_entellus Rhinopithecus_roxellana Rhinopithecus_bieti Pygathrix_nemaeus colAng1 Piliocolobus_tephrosceles Cercocebus_atys Pithecia_pithecia Ateles_geoffroyi Aotus_nancymaae Callicebus_donacophilus Alouatta_palliata Cebus_albifrons cebCap1 Saguinus_imperator saiBol1 Callithrix_jacchus Daubentonia_madagascariensis Lemur_catta Eulemur_fulvus Eulemur_flavifrons Propithecus_coquereli Indri_indri Cheirogaleus_medius Mirza_coquereli Microcebus_murinus Nycticebus_coucang otoGar3\ sGroup_Rodents Glis_glis Graphiurus_murinus Xerus_inauris Spermophilus_dauricus Castor_canadensis speTri2 Aplodontia_rufa Marmota_marmota Hystrix_cristata Heterocephalus_glaber Muscardinus_avellanarius Cuniculus_paca chiLan1 Dasyprocta_punctata fukDam1 Ctenodactylus_gundi Dinomys_branickii Dolichotis_patagonum Hydrochoerus_hydrochaeris Cavia_tschudii Cavia_porcellus cavApe1 dipOrd2 Dipodomys_stephensi Nannospalax_galili Thryonomys_swinderianus Octodon_degus Allactaga_bullata Petromus_typicus Perognathus_longimembris Zapus_hudsonius Jaculus_jaculus Ctenomys_sociabilis Capromys_pilorides Myocastor_coypus Cricetomys_gambianus Peromyscus_maniculatus Onychomys_torridus Cricetulus_griseus Ellobius_talpinus Mesocricetus_auratus Ellobius_lutescens Psammomys_obesus Meriones_unguiculatus micOch1 Ondatra_zibethicus Acomys_cahirinus Sigmodon_hispidus Mus_musculus Mus_caroli Mus_spretus Mus_pahari Rattus_norvegicus\ shortLabel Cactus Align\ speciesCodonDefault hg38\ speciesDefaultOff Pan_paniscus Gorilla_gorilla Pongo_abelii nomLeu3 Macaca_fascicularis Macaca_mulatta Papio_anubis Macaca_nemestrina Mandrillus_leucophaeus Nasalis_larvatus Erythrocebus_patas Cercopithecus_neglectus Chlorocebus_sabaeus Semnopithecus_entellus Rhinopithecus_roxellana Rhinopithecus_bieti Pygathrix_nemaeus colAng1 Piliocolobus_tephrosceles Cercocebus_atys Pithecia_pithecia Ateles_geoffroyi Aotus_nancymaae Callicebus_donacophilus Alouatta_palliata Cebus_albifrons cebCap1 Saguinus_imperator saiBol1 Callithrix_jacchus Daubentonia_madagascariensis Lemur_catta Eulemur_fulvus Eulemur_flavifrons Propithecus_coquereli Indri_indri Cheirogaleus_medius Mirza_coquereli Microcebus_murinus Nycticebus_coucang Neomonachus_schauinslandi Leptonychotes_weddellii Mirounga_angustirostris Zalophus_californianus Ursus_maritimus Ailuropoda_melanoleuca Panthera_tigris Panthera_onca Panthera_pardus Acinonyx_jubatus Puma_concolor Felis_nigripes Cryptoprocta_ferox Felis_catus Ailurus_fulgens Lycaon_pictus Canis_lupus_familiaris Canis_lupus Vulpes_lagopus Hyaena_hyaena Paradoxurus_hermaphroditus Mellivora_capensis Enhydra_lutris Pteronura_brasiliensis Helogale_parvula Mungos_mungo Spilogale_gracilis Suricata_suricatta Mustela_putorius Eubalaena_japonica Eschrichtius_robustus Balaenoptera_bonaerensis Balaenoptera_acutorostrata Ziphius_cavirostris Monodon_monoceros Delphinapterus_leucas Mesoplodon_bidens Lipotes_vexillifer Tursiops_truncatus Neophocaena_asiaeorientalis Phocoena_phocoena Platanista_gangetica Inia_geoffrensis Kogia_breviceps Hippopotamus_amphibius Camelus_dromedarius Camelus_ferus Camelus_bactrianus Vicugna_pacos Sus_scrofa Giraffa_tippelskirchi Okapia_johnstoni Elaphurus_davidianus Catagonus_wagneri Bubalus_bubalis Rangifer_tarandus Odocoileus_virginianus Bison_bison bosMut1 Bos_indicus Bos_taurus Moschus_moschiferus Pantholops_hodgsonii Beatragus_hunteri Ovis_canadensis Ovis_aries Antilocapra_americana Hemitragus_hylocrius Ammotragus_lervia Capra_hircus Capra_aegagrus Saiga_tatarica Tragulus_javanicus Hipposideros_armiger Rhinolophus_sinicus pteAle1 Pteropus_vampyrus Tadarida_brasiliensis Hipposideros_galeritus eidHel1 Miniopterus_schreibersii Miniopterus_natalensis Macroglossus_sobrinus Rousettus_aegyptiacus Eptesicus_fuscus myoBra1 Myotis_myotis myoDav1 Mormoops_blainvillei Megaderma_lyra ptePar1 Desmodus_rotundus Craseonycteris_thonglongyai Anoura_caudifer Murina_feae Tonatia_saurophila Carollia_perspicillata Pipistrellus_pipistrellus Micronycteris_hirsuta Noctilio_leporinus Lasiurus_borealis Artibeus_jamaicensis Glis_glis Graphiurus_murinus Xerus_inauris Spermophilus_dauricus Castor_canadensis Aplodontia_rufa Marmota_marmota Hystrix_cristata Heterocephalus_glaber Muscardinus_avellanarius Cuniculus_paca chiLan1 Dasyprocta_punctata fukDam1 Ctenodactylus_gundi Dinomys_branickii Dolichotis_patagonum Hydrochoerus_hydrochaeris Cavia_tschudii Cavia_porcellus cavApe1 dipOrd2 Dipodomys_stephensi Nannospalax_galili Thryonomys_swinderianus Octodon_degus Allactaga_bullata Petromus_typicus Perognathus_longimembris Zapus_hudsonius Jaculus_jaculus Ctenomys_sociabilis Capromys_pilorides Myocastor_coypus Cricetomys_gambianus Peromyscus_maniculatus Onychomys_torridus Cricetulus_griseus Ellobius_talpinus Mesocricetus_auratus Ellobius_lutescens Psammomys_obesus Meriones_unguiculatus micOch1 Ondatra_zibethicus Acomys_cahirinus Sigmodon_hispidus Mus_caroli Mus_spretus Mus_pahari Rattus_norvegicus Galeopterus_variegatus Ceratotherium_simum_cottoni Ceratotherium_simum Diceros_bicornis Dicerorhinus_sumatrensis Tapirus_indicus Tapirus_terrestris Equus_asinus Equus_przewalskii Tupaia_tana tupChi1 Trichechus_manatus Loxodonta_africana Manis_pentadactyla Manis_javanica Choloepus_didactylus Choloepus_hoffmanni Tolypeutes_matacus Chaetophractus_vellerosus Oryctolagus_cuniculus Lepus_americanus Orycteropus_afer Dasypus_novemcinctus Myrmecophaga_tridactyla Tamandua_tetradactyla Solenodon_paradoxus Scalopus_aquaticus Procavia_capensis Heterohyrax_brucei Chrysochloris_asiatica Uropsilus_gracilis Condylura_cristata Ochotona_princeps Echinops_telfairi eleEdw1 Erinaceus_europaeus sorAra2 Microgale_talazaci\ speciesDefaultOn Pan_troglodytes otoGar3 odoRosDiv1 orcOrc1 myoLuc2 speTri2 Mus_musculus Equus_caballus Crocidura_indochinensis\ speciesGroups Primate Carnivore Cetartiodactyla Chiroptera Rodents Mammals\ speciesLabels Acinonyx_jubatus="cheetah"Acomys_cahirinus="Egyptian spiny mouse"Ailuropoda_melanoleuca="giant panda"Ailurus_fulgens="red panda"Allactaga_bullata="Gobi jerboa"Alouatta_palliata="mantled howler monkey"Ammotragus_lervia="aoudad"Anoura_caudifer="tailed tailless bat"Antilocapra_americana="pronghorn"Aotus_nancymaae="Ma's night monkey"Aplodontia_rufa="mountain beaver"Artibeus_jamaicensis="Jamaican fruit-eating bat"Ateles_geoffroyi="black-handed spider monkey"Balaenoptera_acutorostrata="Minke whale"Balaenoptera_bonaerensis="Antarctic minke whale"Beatragus_hunteri="hirola"Bison_bison="American bison"Bos_indicus="zebu cattle"Bos_taurus="cow"Bubalus_bubalis="water buffalo"Callicebus_donacophilus="white-eared titi monkey"Callithrix_jacchus="white-tufted-ear marmoset"Camelus_bactrianus="Bactrian camel"Camelus_dromedarius="Arabian camel"Camelus_ferus="wild Bactrian camel"Canis_lupus="wolf"Canis_lupus_familiaris="dog"Capra_aegagrus="wild goat"Capra_hircus="goat"Capromys_pilorides="Desmarest's hutia"Carollia_perspicillata="Seba's short-tailed bat"Castor_canadensis="American beaver"Catagonus_wagneri="Chacoan peccary"Cavia_porcellus="domestic guinea pig"Cavia_tschudii="Montane guinea pig"Cebus_albifrons="white-fronted capuchin"Ceratotherium_simum="white rhinoceros"Ceratotherium_simum_cottoni="northern white rhinoceros"Cercocebus_atys="sooty mangabey"Cercopithecus_neglectus="De Brazza's monkey"Chaetophractus_vellerosus="screaming hairy armadillo"Cheirogaleus_medius="lesser dwarf lemur"Chlorocebus_sabaeus="green monkey"Choloepus_didactylus="southern two-toed sloth"Choloepus_hoffmanni="Hoffmann's two-fingered sloth"Chrysochloris_asiatica="Cape golden mole"Condylura_cristata="star-nosed mole"Craseonycteris_thonglongyai="hog-nosed bat"Cricetomys_gambianus="Gambian giant pouched rat"Cricetulus_griseus="Chinese hamster"Crocidura_indochinensis="Indochinese shrew"Cryptoprocta_ferox="fossa"Ctenodactylus_gundi="northern gundi"Ctenomys_sociabilis="social tuco-tuco"Cuniculus_paca="lowland paca"Dasyprocta_punctata="punctate agouti"Dasypus_novemcinctus="nine-banded armadillo"Daubentonia_madagascariensis="aye-aye"Delphinapterus_leucas="beluga whale"Desmodus_rotundus="common vampire bat"Dicerorhinus_sumatrensis="Sumatran rhinoceros"Diceros_bicornis="black rhinoceros"Dinomys_branickii="pacarana"Dipodomys_stephensi="Stephens's kangaroo rat"Dolichotis_patagonum="Patagonian cavy"Echinops_telfairi="small Madagascar hedgehog"Elaphurus_davidianus="Pere David's deer"Ellobius_lutescens="Transcaucasian mole vole"Ellobius_talpinus="northern mole vole"Enhydra_lutris="sea otter"Eptesicus_fuscus="big brown bat"Equus_asinus="ass"Equus_caballus="horse"Equus_przewalskii="Przewalski's horse"Erinaceus_europaeus="western European hedgehog"Erythrocebus_patas="red guenon"Eschrichtius_robustus="grey whale"Eubalaena_japonica="North Pacific right whale"Eulemur_flavifrons="Sclater's lemur"Eulemur_fulvus="brown lemur"Felis_catus="domestic cat"Felis_nigripes="black-footed cat"Galeopterus_variegatus="Sunda flying lemur"Giraffa_tippelskirchi="Masai giraffe"Glis_glis="fat dormouse"Gorilla_gorilla="western gorilla"Graphiurus_murinus="woodland dormouse"Helogale_parvula="dwarf mongoose"Hemitragus_hylocrius="Nilgiri tahr"Heterocephalus_glaber="naked mole-rat"Heterohyrax_brucei="yellow-spotted hyrax"Hippopotamus_amphibius="hippopotamus"Hipposideros_armiger="great roundleaf bat"Hipposideros_galeritus="Cantor's roundleaf bat"Hyaena_hyaena="striped hyena"Hydrochoerus_hydrochaeris="capybara"Hystrix_cristata="crested porcupine"Indri_indri="babakoto"Inia_geoffrensis="boutu"Jaculus_jaculus="lesser Egyptian jerboa"Kogia_breviceps="pygmy sperm whale"Lasiurus_borealis="red bat"Lemur_catta="ring-tailed lemur"Leptonychotes_weddellii="Weddell seal"Lepus_americanus="snowshoe hare"Lipotes_vexillifer="Yangtze River dolphin"Loxodonta_africana="African savanna elephant"Lycaon_pictus="African hunting dog"Macaca_fascicularis="crab-eating macaque"Macaca_mulatta="Rhesus monkey"Macaca_nemestrina="pig-tailed macaque"Macroglossus_sobrinus="long-tongued fruit bat"Mandrillus_leucophaeus="drill"Manis_javanica="Malayan pangolin"Manis_pentadactyla="Chinese pangolin"Marmota_marmota="Alpine marmot"Megaderma_lyra="Indian false vampire"Mellivora_capensis="ratel"Meriones_unguiculatus="Mongolian gerbil"Mesocricetus_auratus="golden hamster"Mesoplodon_bidens="Sowerby's beaked whale"Microcebus_murinus="gray mouse lemur"Microgale_talazaci="Talazac's shrew tenrec"Micronycteris_hirsuta="hairy big-eared bat"Miniopterus_natalensis="Natal long-fingered bat"Miniopterus_schreibersii="Schreibers' long-fingered bat"Mirounga_angustirostris="northern elephant seal"Mirza_coquereli="Coquerel's giant mouse lemur"Monodon_monoceros="narwhal"Mormoops_blainvillei="Antillean ghost-faced bat"Moschus_moschiferus="Siberian musk deer"Mungos_mungo="banded mongoose"Murina_feae="Fea's tube-nosed bat"Mus_caroli="Ryukyu mouse"Mus_musculus="house mouse"Mus_pahari="shrew mouse"Mus_spretus="western wild mouse"Muscardinus_avellanarius="hazel dormouse"Mustela_putorius="European polecat"Myocastor_coypus="nutria"Myotis_myotis="greater mouse-eared bat"Myrmecophaga_tridactyla="giant anteater"Nannospalax_galili="Upper Galilee mountains blind mole rat"Nasalis_larvatus="proboscis monkey"Neomonachus_schauinslandi="Hawaiian monk seal"Neophocaena_asiaeorientalis="narrow-ridged finless porpoise"Noctilio_leporinus="greater bulldog bat"Nycticebus_coucang="slow loris"Ochotona_princeps="American pika"Octodon_degus="degu"Odocoileus_virginianus="white-tailed deer"Okapia_johnstoni="okapi"Ondatra_zibethicus="muskrat"Onychomys_torridus="southern grasshopper mouse"Orycteropus_afer="aardvark"Oryctolagus_cuniculus="rabbit"Ovis_aries="sheep"Ovis_canadensis="bighorn sheep"Pan_paniscus="pygmy chimpanzee"Pan_troglodytes="chimpanzee"Panthera_onca="jaguar"Panthera_pardus="leopard"Panthera_tigris="tiger"Pantholops_hodgsonii="chiru"Papio_anubis="olive baboon"Paradoxurus_hermaphroditus="Asian palm civet"Perognathus_longimembris="little pocket mouse"Peromyscus_maniculatus="deer mouse"Petromus_typicus="dassie-rat"Phocoena_phocoena="harbor porpoise"Piliocolobus_tephrosceles="Ugandan red Colobus"Pipistrellus_pipistrellus="common pipistrelle"Pithecia_pithecia="white-faced saki"Platanista_gangetica="Ganges River dolphin"Pongo_abelii="Sumatran orangutan"Procavia_capensis="Cape rock hyrax"Propithecus_coquereli="Coquerel's sifaka"Psammomys_obesus="fat sand rat"Pteronura_brasiliensis="giant otter"Pteropus_vampyrus="large flying fox"Puma_concolor="puma"Pygathrix_nemaeus="red shanked douc langur"Rangifer_tarandus="reindeer"Rattus_norvegicus="Norway rat"Rhinolophus_sinicus="Chinese rufous horseshoe bat"Rhinopithecus_bieti="black snub-nosed monkey"Rhinopithecus_roxellana="golden snub-nosed monkey"Rousettus_aegyptiacus="Egyptian rousette"Saguinus_imperator="tamarin"Saiga_tatarica="Saiga antelope"Scalopus_aquaticus="eastern mole"Semnopithecus_entellus="Hanuman langur"Sigmodon_hispidus="hispid cotton rat"Solenodon_paradoxus="Hispaniolan solenodon"Spermophilus_dauricus="Daurian ground squirrel"Spilogale_gracilis="western spotted skunk"Suricata_suricatta="meerkat"Sus_scrofa="pig"Tadarida_brasiliensis="Brazilian free-tailed bat"Tamandua_tetradactyla="southern tamandua"Tapirus_indicus="Asiatic tapir"Tapirus_terrestris="Brazilian tapir"Thryonomys_swinderianus="greater cane rat"Tolypeutes_matacus="placentals"Tonatia_saurophila="stripe-headed round-eared bat"Tragulus_javanicus="Java mouse-deer"Trichechus_manatus="West Indian manatee"Tupaia_tana="large tree shrew"Tursiops_truncatus="common bottlenose dolphin"Uropsilus_gracilis="gracile shrew mole"Ursus_maritimus="polar bear"Vicugna_pacos="alpaca"Vulpes_lagopus="Arctic fox"Xerus_inauris="South African ground squirrel"Zalophus_californianus="California sea lion"Zapus_hudsonius="meadow jumping mouse"Ziphius_cavirostris="Cuvier's beaked whale"\ subGroups view=align clade=mammals\ summary /gbdb/hg38/cactus241way/tinySummary.bb\ track cactus241wayBM\ type bigMaf\ viewUi on\ ENCFF865IXT_ENCFF761PKU_ENCFF112GCV_ENCFF310UCW ENCFF865IXT_ENCFF761PKU_ENCFF112GCV_ENCFF310UCW bigBed 9 + 5 Prostate gland, male adult (37 years): (1) cCREs 4 145 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF865IXT_ENCFF761PKU_ENCFF112GCV_ENCFF310UCW.bb\ longLabel Prostate gland, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 132\ shortLabel ENCFF865IXT_ENCFF761PKU_ENCFF112GCV_ENCFF310UCW\ subGroups organ=prostate view=cCREs_view simpleBiosample=prostate_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF865IXT_ENCFF761PKU_ENCFF112GCV_ENCFF310UCW\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF769ZDL ENCSR000BGY Peak bigBed 5 GM12878 IRF4 peaks 4 145 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/88aaacf2-0d9c-440d-9e6d-73c66095762a/ENCFF769ZDL.bigBed\ labelFields none\ longLabel GM12878 IRF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF769ZDL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF573ZFG ENCSR000DPO Signal bigWig AG04450 H3K4me3 signal 2 145 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/d180b687-9516-4487-b0e1-970817991985/ENCFF573ZFG.bigWig\ color 255,0,0\ longLabel AG04450 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPO Signal\ track wgEncodeReg4Epigenetics_ENCFF573ZFG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF349JMQ ENCSR067GOC + strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 145 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/51e5f9cc-053d-49a6-b454-16150fff9a10/ENCFF349JMQ.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR067GOC + strand\ track wgEncodeReg4RnaSeq_ENCFF349JMQ\ type bigWig\ visibility full\ encTfChipPkENCFF587POH GM12878 MTA2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in GM12878 from ENCODE 3 (ENCFF587POH) 0 145 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in GM12878 from ENCODE 3 (ENCFF587POH)\ parent encTfChipPk off\ shortLabel GM12878 MTA2\ subGroups cellType=GM12878 factor=MTA2\ track encTfChipPkENCFF587POH\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward 0 145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward 1 145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472685v1 HG01071.mat chain GCA_018472685.1 HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 145 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472685.1\ parent hprcChainNetViewchain off\ priority 51\ shortLabel HG01071.mat\ subGroups view=chain sample=s051 population=amr subpop=pur hap=mat\ track chainHprcGCA_018472685v1\ type chain GCA_018472685.1\ wgEncodeRegDnaseUwHsmmHotspot HSMM Ht bigBed 6 + HSMM skeletal muscle myoblast DNaseI Hotspots from ENCODE 0 145 85 255 190 170 255 222 1 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HSMM Ht\ subGroups view=b_Hot cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmHotspot\ type bigBed 6 +\ pancAlphaMerged Pancreas Alpha Cells Merged bigWig Methylation Atlas: Pancreas Alpha Cells Merged Samples 2 145 218 165 32 236 210 143 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAlphaMerged.bw\ color 218,165,32\ longLabel Methylation Atlas: Pancreas Alpha Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 145\ shortLabel Pancreas Alpha Cells Merged\ subGroups cellType=Pancreas-Alpha dataType=Merged\ track pancAlphaMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF241UWA_ENCFF494ASH_ENCFF114QME_ENCFF553NAP ENCFF241UWA_ENCFF494ASH_ENCFF114QME_ENCFF553NAP bigBed 9 + 5 GM23338: (1) cCREs 4 146 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF241UWA_ENCFF494ASH_ENCFF114QME_ENCFF553NAP.bb\ longLabel GM23338: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 36\ shortLabel ENCFF241UWA_ENCFF494ASH_ENCFF114QME_ENCFF553NAP\ subGroups organ=skin view=cCREs_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeCcres\ track ENCFF241UWA_ENCFF494ASH_ENCFF114QME_ENCFF553NAP\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF486IOQ ENCSR000BGY Signal bigWig GM12878 IRF4 ENCSR000BGY signal 2 146 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/30937b6e-6ec4-40b3-bb77-922ced7ec7ea/ENCFF486IOQ.bigWig\ color 254,75,173\ longLabel GM12878 IRF4 ENCSR000BGY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGY Signal\ track wgEncodeReg4TfChip_ENCFF486IOQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF478XPS ENCSR000DPP Peak bigBed 5 AG09309 CTCF peak 4 146 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/4baed384-f606-4243-a050-a6841ab15252/ENCFF478XPS.bigBed\ color 0,176,240\ labelFields none\ longLabel AG09309 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPP Peak\ track wgEncodeReg4Epigenetics_ENCFF478XPS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF142HCE ENCSR067GOC - strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 146 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/de2e4b43-dd21-42c1-8b08-99c9972cee94/ENCFF142HCE.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR067GOC - strand\ track wgEncodeReg4RnaSeq_ENCFF142HCE\ type bigWig\ visibility full\ encTfChipPkENCFF661FMB GM12878 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in GM12878 from ENCODE 3 (ENCFF661FMB) 0 146 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in GM12878 from ENCODE 3 (ENCFF661FMB)\ parent encTfChipPk off\ shortLabel GM12878 MTA3\ subGroups cellType=GM12878 factor=MTA3\ track encTfChipPkENCFF661FMB\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse 0 146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse 1 146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep2.CNhs13719.13346-143D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep2_CNhs13719_13346-143D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13346-143D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep2_CNhs13719_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13346-143D7\ urlLabel FANTOM5 Details:\ netHprcGCA_018472685v1 HG01071.mat netAlign GCA_018472685.1 chainHprcGCA_018472685v1 HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chain Nets 1 146 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01071.mat HG01071.pri.mat.f1_v2 (May 2021 GCA_018472685.1_HG01071.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472685.1\ parent hprcChainNetViewnet off\ priority 51\ shortLabel HG01071.mat\ subGroups view=net sample=s051 population=amr subpop=pur hap=mat\ track netHprcGCA_018472685v1\ type netAlign GCA_018472685.1 chainHprcGCA_018472685v1\ wgEncodeRegDnaseUwLhcnm2Hotspot LHCN-M2 Ht bigBed 6 + LHCN-M2 skeletal myoblast DNaseI Hotspots from ENCODE 0 146 85 255 193 170 255 224 1 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel LHCN-M2 Ht\ subGroups view=b_Hot cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Hotspot\ type bigBed 6 +\ pancAlpha453 Pancreas - Alpha - Z00000453 bigWig Methylation Atlas: Pancreas - Alpha - Z00000453 2 146 218 165 32 236 210 143 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAlpha453.bw\ color 218,165,32\ longLabel Methylation Atlas: Pancreas - Alpha - Z00000453\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 146\ shortLabel Pancreas - Alpha - Z00000453\ subGroups cellType=Pancreas-Alpha dataType=Replicate\ track pancAlpha453\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF766CUM_ENCFF446OPT_ENCFF641QBD_ENCFF369MIX ENCFF766CUM_ENCFF446OPT_ENCFF641QBD_ENCFF369MIX bigBed 9 + 5 GM23338: (1) cCREs 4 147 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF766CUM_ENCFF446OPT_ENCFF641QBD_ENCFF369MIX.bb\ longLabel GM23338: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 35\ shortLabel ENCFF766CUM_ENCFF446OPT_ENCFF641QBD_ENCFF369MIX\ subGroups organ=skin view=cCREs_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeCcres\ track ENCFF766CUM_ENCFF446OPT_ENCFF641QBD_ENCFF369MIX\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF506WWB ENCSR000BGZ Peak bigBed 5 GM12878 TCF12 peaks 4 147 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/9a8fc48a-f0ff-4c73-9ec3-0ca965e6fbce/ENCFF506WWB.bigBed\ labelFields none\ longLabel GM12878 TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF506WWB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF233THH ENCSR000DPP Signal bigWig AG09309 CTCF signal 2 147 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/58f4d80a-0bfd-493f-a4e6-29ea9c821269/ENCFF233THH.bigWig\ color 0,176,240\ longLabel AG09309 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPP Signal\ track wgEncodeReg4Epigenetics_ENCFF233THH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF656OUX ENCSR071DYD + strand bigWig Pancreas tissue female child (16 years) + strand total RNA-seq signal 2 147 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/45d0aa31-bf97-4b88-b020-79fefc1a860f/ENCFF656OUX.bigWig\ color 175,100,41\ longLabel Pancreas tissue female child (16 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR071DYD + strand\ track wgEncodeReg4RnaSeq_ENCFF656OUX\ type bigWig\ visibility full\ encTfChipPkENCFF199HGX GM12878 MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in GM12878 from ENCODE 3 (ENCFF199HGX) 0 147 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in GM12878 from ENCODE 3 (ENCFF199HGX)\ parent encTfChipPk off\ shortLabel GM12878 MXI1\ subGroups cellType=GM12878 factor=MXI1\ track encTfChipPkENCFF199HGX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward 0 147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward 1 147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472765v1 HG00735.mat chain GCA_018472765.1 HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 147 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472765.1\ parent hprcChainNetViewchain off\ priority 54\ shortLabel HG00735.mat\ subGroups view=chain sample=s054 population=amr subpop=pur hap=mat\ track chainHprcGCA_018472765v1\ type chain GCA_018472765.1\ wgEncodeRegDnaseUwLhcnm2Diff4dHotspot LHCN-M2 diff4d Ht bigBed 6 + LHCN-M2 skeletal myoblast (diff 4d) DNaseI Hotspots from ENCODE 0 147 85 255 198 170 255 226 1 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel LHCN-M2 diff4d Ht\ subGroups view=b_Hot cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Diff4dHotspot\ type bigBed 6 +\ pancAlpha456 Pancreas - Alpha - Z00000456 bigWig Methylation Atlas: Pancreas - Alpha - Z00000456 2 147 218 165 32 236 210 143 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAlpha456.bw\ color 218,165,32\ longLabel Methylation Atlas: Pancreas - Alpha - Z00000456\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 147\ shortLabel Pancreas - Alpha - Z00000456\ subGroups cellType=Pancreas-Alpha dataType=Replicate\ track pancAlpha456\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF494IGD_ENCFF719EBT_ENCFF443TJZ_ENCFF638DZB ENCFF494IGD_ENCFF719EBT_ENCFF443TJZ_ENCFF638DZB bigBed 9 + 5 Keratinocyte, female: (1) cCREs 4 148 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF494IGD_ENCFF719EBT_ENCFF443TJZ_ENCFF638DZB.bb\ longLabel Keratinocyte, female: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 59\ shortLabel ENCFF494IGD_ENCFF719EBT_ENCFF443TJZ_ENCFF638DZB\ subGroups organ=skin view=cCREs_view simpleBiosample=keratinocyte-_female biosampleType=primary_cell donor=ENCDO268AAA dataType=typeCcres\ track ENCFF494IGD_ENCFF719EBT_ENCFF443TJZ_ENCFF638DZB\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF579VGX ENCSR000BGZ Signal bigWig GM12878 TCF12 ENCSR000BGZ signal 2 148 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5428ede1-846d-4045-b52f-4534b50f910c/ENCFF579VGX.bigWig\ color 254,75,173\ longLabel GM12878 TCF12 ENCSR000BGZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BGZ Signal\ track wgEncodeReg4TfChip_ENCFF579VGX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF121FCK ENCSR000DPR Peak bigBed 5 AG09309 H3K4me3 peak 4 148 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/20027a1b-5773-4980-95c5-daf0644279f2/ENCFF121FCK.bigBed\ color 255,0,0\ longLabel AG09309 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPR Peak\ track wgEncodeReg4Epigenetics_ENCFF121FCK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF509ECI ENCSR071DYD - strand bigWig Pancreas tissue female child (16 years) - strand total RNA-seq signal 2 148 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/a40c4103-2ae4-4645-bb73-bca7682211a9/ENCFF509ECI.bigWig\ color 175,100,41\ longLabel Pancreas tissue female child (16 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR071DYD - strand\ track wgEncodeReg4RnaSeq_ENCFF509ECI\ type bigWig\ visibility full\ encTfChipPkENCFF402TSJ GM12878 MYB narrowPeak Transcription Factor ChIP-seq Peaks of MYB in GM12878 from ENCODE 3 (ENCFF402TSJ) 0 148 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of MYB in GM12878 from ENCODE 3 (ENCFF402TSJ)\ parent encTfChipPk off\ shortLabel GM12878 MYB\ subGroups cellType=GM12878 factor=MYB\ track encTfChipPkENCFF402TSJ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse 0 148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse 1 148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep3.CNhs13731.13358-143F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep3_CNhs13731_13358-143F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13358-143F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep3_CNhs13731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13358-143F1\ urlLabel FANTOM5 Details:\ netHprcGCA_018472765v1 HG00735.mat netAlign GCA_018472765.1 chainHprcGCA_018472765v1 HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chain Nets 1 148 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00735.mat HG00735.pri.mat.f1_v2 (May 2021 GCA_018472765.1_HG00735.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472765.1\ parent hprcChainNetViewnet off\ priority 54\ shortLabel HG00735.mat\ subGroups view=net sample=s054 population=amr subpop=pur hap=mat\ track netHprcGCA_018472765v1\ type netAlign GCA_018472765.1 chainHprcGCA_018472765v1\ wgEncodeRegDnaseUwHsmmtubeHotspot HSMMtube Ht bigBed 6 + HSMMtube skeletal muscle myotube DNaseI Hotspots from ENCODE 0 148 85 255 204 170 255 229 1 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HSMMtube Ht\ subGroups view=b_Hot cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmtubeHotspot\ type bigBed 6 +\ pancAlpha459 Pancreas - Alpha - Z00000459 bigWig Methylation Atlas: Pancreas - Alpha - Z00000459 2 148 218 165 32 236 210 143 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAlpha459.bw\ color 218,165,32\ longLabel Methylation Atlas: Pancreas - Alpha - Z00000459\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 148\ shortLabel Pancreas - Alpha - Z00000459\ subGroups cellType=Pancreas-Alpha dataType=Replicate\ track pancAlpha459\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF241BCT_ENCFF474VCQ_ENCFF525KQP_ENCFF715AGA ENCFF241BCT_ENCFF474VCQ_ENCFF525KQP_ENCFF715AGA bigBed 9 + 5 Peyers patch, female adult (51 years): (1) cCREs 4 149 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF241BCT_ENCFF474VCQ_ENCFF525KQP_ENCFF715AGA.bb\ longLabel Peyers patch, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 127\ shortLabel ENCFF241BCT_ENCFF474VCQ_ENCFF525KQP_ENCFF715AGA\ subGroups organ=small_intestine view=cCREs_view simpleBiosample=Peyers_patch-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF241BCT_ENCFF474VCQ_ENCFF525KQP_ENCFF715AGA\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF717YPR ENCSR000BHA Peak bigBed 5 GM12878 BCL11A peaks 4 149 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/ad412e96-4174-429f-8271-e404b0257613/ENCFF717YPR.bigBed\ labelFields none\ longLabel GM12878 BCL11A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF717YPR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF836LQZ ENCSR000DPR Signal bigWig AG09309 H3K4me3 signal 2 149 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/76556032-bf4d-47d7-be99-33909ae1550e/ENCFF836LQZ.bigWig\ color 255,0,0\ longLabel AG09309 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPR Signal\ track wgEncodeReg4Epigenetics_ENCFF836LQZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF432ENB ENCSR071ZLM + strand bigWig Uterus tissue female adult (51 years) + strand total RNA-seq signal 2 149 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/461e7eb5-844a-497a-9e51-785a5ddd778b/ENCFF432ENB.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR071ZLM + strand\ track wgEncodeReg4RnaSeq_ENCFF432ENB\ type bigWig\ visibility full\ encTfChipPkENCFF811VEN GM12878 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in GM12878 from ENCODE 3 (ENCFF811VEN) 0 149 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NBN in GM12878 from ENCODE 3 (ENCFF811VEN)\ parent encTfChipPk off\ shortLabel GM12878 NBN\ subGroups cellType=GM12878 factor=NBN\ track encTfChipPkENCFF811VEN\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward 0 149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward 1 149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504365v1 HG01109.mat chain GCA_018504365.1 HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 149 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504365.1\ parent hprcChainNetViewchain off\ priority 56\ shortLabel HG01109.mat\ subGroups view=chain sample=s056 population=amr subpop=pur hap=mat\ track chainHprcGCA_018504365v1\ type chain GCA_018504365.1\ wgEncodeRegDnaseUwHuvecHotspot HUVEC Ht bigBed 6 + HUVEC umbilical vein endothelial cell DNaseI Hotspots from ENCODE 0 149 85 255 215 170 255 235 1 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HUVEC Ht\ subGroups view=b_Hot cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHuvecHotspot\ type bigBed 6 +\ pancBetaMerged Pancreas Beta Cells Merged bigWig Methylation Atlas: Pancreas Beta Cells Merged Samples 2 149 255 215 0 255 235 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancBetaMerged.bw\ color 255,215,0\ longLabel Methylation Atlas: Pancreas Beta Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 149\ shortLabel Pancreas Beta Cells Merged\ subGroups cellType=Pancreas-Beta dataType=Merged\ track pancBetaMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF717OQE_ENCFF305GQX_ENCFF485RWJ_ENCFF694HBV ENCFF717OQE_ENCFF305GQX_ENCFF485RWJ_ENCFF694HBV bigBed 9 + 5 Peyers patch, male adult (54 years): (1) cCREs 4 150 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF717OQE_ENCFF305GQX_ENCFF485RWJ_ENCFF694HBV.bb\ longLabel Peyers patch, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 130\ shortLabel ENCFF717OQE_ENCFF305GQX_ENCFF485RWJ_ENCFF694HBV\ subGroups organ=small_intestine view=cCREs_view simpleBiosample=Peyers_patch-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF717OQE_ENCFF305GQX_ENCFF485RWJ_ENCFF694HBV\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF925SGV ENCSR000BHA Signal bigWig GM12878 BCL11A ENCSR000BHA signal 2 150 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/cdff8b29-0aea-4133-be9c-74b9c2b10986/ENCFF925SGV.bigWig\ color 254,75,173\ longLabel GM12878 BCL11A ENCSR000BHA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHA Signal\ track wgEncodeReg4TfChip_ENCFF925SGV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF401ZTN ENCSR000DPS Peak bigBed 5 AG09319 CTCF peak 4 150 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a429901e-9580-4652-9f67-cba82f29242a/ENCFF401ZTN.bigBed\ color 0,176,240\ labelFields none\ longLabel AG09319 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPS Peak\ track wgEncodeReg4Epigenetics_ENCFF401ZTN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF642VAM ENCSR071ZLM - strand bigWig Uterus tissue female adult (51 years) - strand total RNA-seq signal 2 150 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/aa2b6873-acc7-4cf3-a6ef-5080a40bfaf7/ENCFF642VAM.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR071ZLM - strand\ track wgEncodeReg4RnaSeq_ENCFF642VAM\ type bigWig\ visibility full\ encTfChipPkENCFF138ZBJ GM12878 NFATC1 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC1 in GM12878 from ENCODE 3 (ENCFF138ZBJ) 0 150 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFATC1 in GM12878 from ENCODE 3 (ENCFF138ZBJ)\ parent encTfChipPk off\ shortLabel GM12878 NFATC1\ subGroups cellType=GM12878 factor=NFATC1\ track encTfChipPkENCFF138ZBJ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse 0 150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse 1 150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep1.CNhs13660.13335-143C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep1_CNhs13660_13335-143C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13335-143C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep1_CNhs13660_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13335-143C5\ urlLabel FANTOM5 Details:\ netHprcGCA_018504365v1 HG01109.mat netAlign GCA_018504365.1 chainHprcGCA_018504365v1 HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chain Nets 1 150 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01109.mat HG01109.pri.mat.f1_v2 (May 2021 GCA_018504365.1_HG01109.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504365.1\ parent hprcChainNetViewnet off\ priority 56\ shortLabel HG01109.mat\ subGroups view=net sample=s056 population=amr subpop=pur hap=mat\ track netHprcGCA_018504365v1\ type netAlign GCA_018504365.1 chainHprcGCA_018504365v1\ wgEncodeRegDnaseUwHmveclblHotspot HMVEC-LBl Ht bigBed 6 + HMVEC-LBl lung microvascular epithelium. blood DNaseI Hotspots from ENCODE 0 150 85 255 220 170 255 237 1 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-LBl Ht\ subGroups view=b_Hot cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmveclblHotspot\ type bigBed 6 +\ pancBeta452 Pancreas - Beta - Z00000452 bigWig Methylation Atlas: Pancreas - Beta - Z00000452 2 150 255 215 0 255 235 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancBeta452.bw\ color 255,215,0\ longLabel Methylation Atlas: Pancreas - Beta - Z00000452\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 150\ shortLabel Pancreas - Beta - Z00000452\ subGroups cellType=Pancreas-Beta dataType=Replicate\ track pancBeta452\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF812JCQ_ENCFF675KIN_ENCFF302XLU_ENCFF945PHV ENCFF812JCQ_ENCFF675KIN_ENCFF302XLU_ENCFF945PHV bigBed 9 + 5 Peyers patch, female adult (53 years): (1) cCREs 4 151 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF812JCQ_ENCFF675KIN_ENCFF302XLU_ENCFF945PHV.bb\ longLabel Peyers patch, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 128\ shortLabel ENCFF812JCQ_ENCFF675KIN_ENCFF302XLU_ENCFF945PHV\ subGroups organ=small_intestine view=cCREs_view simpleBiosample=Peyers_patch-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF812JCQ_ENCFF675KIN_ENCFF302XLU_ENCFF945PHV\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF347NRI ENCSR000BHB Peak bigBed 5 GM12878 EP300 peaks 4 151 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/84f8a422-ccca-4ce6-8f89-3b47b50b8b4e/ENCFF347NRI.bigBed\ labelFields none\ longLabel GM12878 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF347NRI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF683EOM ENCSR000DPS Signal bigWig AG09319 CTCF signal 2 151 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/fbf314e1-e148-40d3-afbf-cb268749b433/ENCFF683EOM.bigWig\ color 0,176,240\ longLabel AG09319 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPS Signal\ track wgEncodeReg4Epigenetics_ENCFF683EOM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF480GYV ENCSR073XFZ + strand bigWig OCI-LY7 + strand total RNA-seq signal 2 151 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/ea51815f-14d5-412c-90a9-f2ffcf874cbe/ENCFF480GYV.bigWig\ color 254,75,173\ longLabel OCI-LY7 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR073XFZ + strand\ track wgEncodeReg4RnaSeq_ENCFF480GYV\ type bigWig\ visibility full\ encTfChipPkENCFF704PDA GM12878 NFATC3 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in GM12878 from ENCODE 3 (ENCFF704PDA) 0 151 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in GM12878 from ENCODE 3 (ENCFF704PDA)\ parent encTfChipPk off\ shortLabel GM12878 NFATC3\ subGroups cellType=GM12878 factor=NFATC3\ track encTfChipPkENCFF704PDA\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward 0 151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward 1 151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504375v1 HG01243.mat chain GCA_018504375.1 HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 151 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504375.1\ parent hprcChainNetViewchain off\ priority 57\ shortLabel HG01243.mat\ subGroups view=chain sample=s057 population=amr subpop=pur hap=mat\ track chainHprcGCA_018504375v1\ type chain GCA_018504375.1\ wgEncodeRegDnaseUwHmvecdbladHotspot HMVEC-dBl-Ad Ht bigBed 6 + HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Hotspots from ENCODE 0 151 85 255 224 170 255 239 1 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dBl-Ad Ht\ subGroups view=b_Hot cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdbladHotspot\ type bigBed 6 +\ pancBeta455 Pancreas - Beta - Z00000455 bigWig Methylation Atlas: Pancreas - Beta - Z00000455 2 151 255 215 0 255 235 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancBeta455.bw\ color 255,215,0\ longLabel Methylation Atlas: Pancreas - Beta - Z00000455\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 151\ shortLabel Pancreas - Beta - Z00000455\ subGroups cellType=Pancreas-Beta dataType=Replicate\ track pancBeta455\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF926IJX_ENCFF996ZNX_ENCFF249ILQ_ENCFF758HAD ENCFF926IJX_ENCFF996ZNX_ENCFF249ILQ_ENCFF758HAD bigBed 9 + 5 Peyers patch, male adult (37 years): (1) cCREs 4 152 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF926IJX_ENCFF996ZNX_ENCFF249ILQ_ENCFF758HAD.bb\ longLabel Peyers patch, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 129\ shortLabel ENCFF926IJX_ENCFF996ZNX_ENCFF249ILQ_ENCFF758HAD\ subGroups organ=small_intestine view=cCREs_view simpleBiosample=Peyers_patch-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF926IJX_ENCFF996ZNX_ENCFF249ILQ_ENCFF758HAD\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF928OAA ENCSR000BHB Signal bigWig GM12878 EP300 ENCSR000BHB signal 2 152 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/4d0c6621-1f5c-4e20-8380-1df6e9591288/ENCFF928OAA.bigWig\ color 254,75,173\ longLabel GM12878 EP300 ENCSR000BHB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHB Signal\ track wgEncodeReg4TfChip_ENCFF928OAA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF917FEY ENCSR000DPU Signal bigWig AG09319 H3K4me3 signal 2 152 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/79408d35-4fb7-4123-b862-001761da5250/ENCFF917FEY.bigWig\ color 255,0,0\ longLabel AG09319 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPU Signal\ track wgEncodeReg4Epigenetics_ENCFF917FEY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF537UAQ ENCSR073XFZ - strand bigWig OCI-LY7 - strand total RNA-seq signal 2 152 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/661d86b9-0226-438f-8774-290cdc6aac88/ENCFF537UAQ.bigWig\ color 254,75,173\ longLabel OCI-LY7 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR073XFZ - strand\ track wgEncodeReg4RnaSeq_ENCFF537UAQ\ type bigWig\ visibility full\ encTfChipPkENCFF743UMZ GM12878 NFE2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2 in GM12878 from ENCODE 3 (ENCFF743UMZ) 0 152 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFE2 in GM12878 from ENCODE 3 (ENCFF743UMZ)\ parent encTfChipPk off\ shortLabel GM12878 NFE2\ subGroups cellType=GM12878 factor=NFE2\ track encTfChipPkENCFF743UMZ\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse 0 152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse 1 152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep2.CNhs13720.13347-143D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep2_CNhs13720_13347-143D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13347-143D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep2_CNhs13720_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13347-143D8\ urlLabel FANTOM5 Details:\ netHprcGCA_018504375v1 HG01243.mat netAlign GCA_018504375.1 chainHprcGCA_018504375v1 HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chain Nets 1 152 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01243.mat HG01243.pri.mat.f1_v2 (May 2021 GCA_018504375.1_HG01243.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504375.1\ parent hprcChainNetViewnet off\ priority 57\ shortLabel HG01243.mat\ subGroups view=net sample=s057 population=amr subpop=pur hap=mat\ track netHprcGCA_018504375v1\ type netAlign GCA_018504375.1 chainHprcGCA_018504375v1\ wgEncodeRegDnaseUwHmvecdlyneoHotspot HMVEC-dLy-Neo Ht bigBed 6 + HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Hotspots from ENCODE 0 152 85 255 226 170 255 240 1 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV endo cell, neonate lymph DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dLy-Neo Ht\ subGroups view=b_Hot cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyneoHotspot\ type bigBed 6 +\ pancBeta458 Pancreas - Beta - Z00000458 bigWig Methylation Atlas: Pancreas - Beta - Z00000458 2 152 255 215 0 255 235 127 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancBeta458.bw\ color 255,215,0\ longLabel Methylation Atlas: Pancreas - Beta - Z00000458\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 152\ shortLabel Pancreas - Beta - Z00000458\ subGroups cellType=Pancreas-Beta dataType=Replicate\ track pancBeta458\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF221CLN_ENCFF551GZK_ENCFF438NSZ_ENCFF806GMH ENCFF221CLN_ENCFF551GZK_ENCFF438NSZ_ENCFF806GMH bigBed 9 + 5 Spleen, female adult (61 years): (1) cCREs 4 153 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF221CLN_ENCFF551GZK_ENCFF438NSZ_ENCFF806GMH.bb\ longLabel Spleen, female adult (61 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 142\ shortLabel ENCFF221CLN_ENCFF551GZK_ENCFF438NSZ_ENCFF806GMH\ subGroups organ=spleen view=cCREs_view simpleBiosample=spleen-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeCcres\ track ENCFF221CLN_ENCFF551GZK_ENCFF438NSZ_ENCFF806GMH\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF024ZOE ENCSR000BHC Peak bigBed 5 GM12878 ZBTB33 peaks 4 153 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/11446ed8-57e0-4030-a6ca-20b433849bd6/ENCFF024ZOE.bigBed\ labelFields none\ longLabel GM12878 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF024ZOE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF549AQK ENCSR000DPV Peak bigBed 5 AG10803 CTCF peak 4 153 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/1d25f50a-607c-4274-80ee-5de6a485b537/ENCFF549AQK.bigBed\ color 0,176,240\ labelFields none\ longLabel AG10803 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPV Peak\ track wgEncodeReg4Epigenetics_ENCFF549AQK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF434LID ENCSR074FTH + strand bigWig Spleen tissue male adult (26 years) + strand total RNA-seq signal 2 153 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/33d0378e-8bef-41fa-bac6-579ae398302d/ENCFF434LID.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (26 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR074FTH + strand\ track wgEncodeReg4RnaSeq_ENCFF434LID\ type bigWig\ visibility full\ encTfChipPkENCFF480WDX GM12878 NFIC narrowPeak Transcription Factor ChIP-seq Peaks of NFIC in GM12878 from ENCODE 3 (ENCFF480WDX) 0 153 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFIC in GM12878 from ENCODE 3 (ENCFF480WDX)\ parent encTfChipPk off\ shortLabel GM12878 NFIC\ subGroups cellType=GM12878 factor=NFIC\ track encTfChipPkENCFF480WDX\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day08Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward 0 153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day08Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward 1 153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506975v1 HG00733.mat chain GCA_018506975.1 HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 153 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506975.1\ parent hprcChainNetViewchain off\ priority 60\ shortLabel HG00733.mat\ subGroups view=chain sample=s060 population=amr subpop=pur hap=mat\ track chainHprcGCA_018506975v1\ type chain GCA_018506975.1\ wgEncodeRegDnaseUwHmvecdblneoHotspot HMVEC-dBl-Neo Ht bigBed 6 + HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Hotspots from ENCODE 0 153 85 255 229 170 255 242 1 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dBl-Neo Ht\ subGroups view=b_Hot cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdblneoHotspot\ type bigBed 6 +\ pancDeltaMerged Pancreas Delta Cells Merged bigWig Methylation Atlas: Pancreas Delta Cells Merged Samples 2 153 240 230 140 247 242 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDeltaMerged.bw\ color 240,230,140\ longLabel Methylation Atlas: Pancreas Delta Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 153\ shortLabel Pancreas Delta Cells Merged\ subGroups cellType=Pancreas-Delta dataType=Merged\ track pancDeltaMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF722LEE_ENCFF077FBW_ENCFF634AAL_ENCFF215HQE ENCFF722LEE_ENCFF077FBW_ENCFF634AAL_ENCFF215HQE bigBed 9 + 5 Spleen, female adult (41 years): (1) cCREs 4 154 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF722LEE_ENCFF077FBW_ENCFF634AAL_ENCFF215HQE.bb\ longLabel Spleen, female adult (41 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 139\ shortLabel ENCFF722LEE_ENCFF077FBW_ENCFF634AAL_ENCFF215HQE\ subGroups organ=spleen view=cCREs_view simpleBiosample=spleen-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCcres\ track ENCFF722LEE_ENCFF077FBW_ENCFF634AAL_ENCFF215HQE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF544CDL ENCSR000BHC Signal bigWig GM12878 ZBTB33 ENCSR000BHC signal 2 154 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/e8f15f1f-b05c-4d18-8ad6-4276b11a5b07/ENCFF544CDL.bigWig\ color 254,75,173\ longLabel GM12878 ZBTB33 ENCSR000BHC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHC Signal\ track wgEncodeReg4TfChip_ENCFF544CDL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF080HIA ENCSR000DPV Signal bigWig AG10803 CTCF signal 2 154 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b47b8a9d-68a9-43c5-9a31-0ab9bd2a983c/ENCFF080HIA.bigWig\ color 0,176,240\ longLabel AG10803 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPV Signal\ track wgEncodeReg4Epigenetics_ENCFF080HIA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF087IOH ENCSR074FTH - strand bigWig Spleen tissue male adult (26 years) - strand total RNA-seq signal 2 154 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/14a0bd33-6de4-4a38-85e0-6c6318aa1917/ENCFF087IOH.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (26 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR074FTH - strand\ track wgEncodeReg4RnaSeq_ENCFF087IOH\ type bigWig\ visibility full\ encTfChipPkENCFF860IXB GM12878 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in GM12878 from ENCODE 3 (ENCFF860IXB) 0 154 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in GM12878 from ENCODE 3 (ENCFF860IXB)\ parent encTfChipPk off\ shortLabel GM12878 NFXL1\ subGroups cellType=GM12878 factor=NFXL1\ track encTfChipPkENCFF860IXB\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_rev Hes3-gfpCardiomyocyticInduction_Day08Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse 0 154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_rev Hes3-gfpCardiomyocyticInduction_Day08Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse 1 154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day08%2c%20biol_rep3.CNhs13732.13359-143F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day08, biol_rep3_CNhs13732_13359-143F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13359-143F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay08BiolRep3_CNhs13732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13359-143F2\ urlLabel FANTOM5 Details:\ netHprcGCA_018506975v1 HG00733.mat netAlign GCA_018506975.1 chainHprcGCA_018506975v1 HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chain Nets 1 154 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00733.mat HG00733.pri.mat.f1_v2 (May 2021 GCA_018506975.1_HG00733.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506975.1\ parent hprcChainNetViewnet off\ priority 60\ shortLabel HG00733.mat\ subGroups view=net sample=s060 population=amr subpop=pur hap=mat\ track netHprcGCA_018506975v1\ type netAlign GCA_018506975.1 chainHprcGCA_018506975v1\ wgEncodeRegDnaseUwHrgecHotspot HRGEC Ht bigBed 6 + HRGEC renal glomerular endothelial cell DNaseI Hotspots from ENCODE 0 154 85 255 232 170 255 243 1 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRGEC Ht\ subGroups view=b_Hot cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrgecHotspot\ type bigBed 6 +\ pancDelta451 Pancreas - Delta - Z00000451 bigWig Methylation Atlas: Pancreas - Delta - Z00000451 2 154 240 230 140 247 242 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDelta451.bw\ color 240,230,140\ longLabel Methylation Atlas: Pancreas - Delta - Z00000451\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 154\ shortLabel Pancreas - Delta - Z00000451\ subGroups cellType=Pancreas-Delta dataType=Replicate\ track pancDelta451\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF162OQB_ENCFF387XJD_ENCFF987FRB_ENCFF722HFK ENCFF162OQB_ENCFF387XJD_ENCFF987FRB_ENCFF722HFK bigBed 9 + 5 Spleen, female adult (53 years): (1) cCREs 4 155 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF162OQB_ENCFF387XJD_ENCFF987FRB_ENCFF722HFK.bb\ longLabel Spleen, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 140\ shortLabel ENCFF162OQB_ENCFF387XJD_ENCFF987FRB_ENCFF722HFK\ subGroups organ=spleen view=cCREs_view simpleBiosample=spleen-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF162OQB_ENCFF387XJD_ENCFF987FRB_ENCFF722HFK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF482PUW ENCSR000BHD Peak bigBed 5 GM12878 PAX5 peaks 4 155 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/4d59438a-cf8d-43ef-8308-60abd013d8bd/ENCFF482PUW.bigBed\ labelFields none\ longLabel GM12878 PAX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF482PUW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF901HAK ENCSR000DPX Peak bigBed 5 AG10803 H3K4me3 peak 4 155 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/e5b21ba2-08d3-4644-b57a-a4d1f5b6e445/ENCFF901HAK.bigBed\ color 255,0,0\ longLabel AG10803 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPX Peak\ track wgEncodeReg4Epigenetics_ENCFF901HAK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF579HXI ENCSR075ZTG + strand bigWig Pancreas tissue male adult (26 years) + strand total RNA-seq signal 2 155 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/2d26a576-648b-4997-b8cc-033f2bf6d27d/ENCFF579HXI.bigWig\ color 175,100,41\ longLabel Pancreas tissue male adult (26 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR075ZTG + strand\ track wgEncodeReg4RnaSeq_ENCFF579HXI\ type bigWig\ visibility full\ encTfChipPkENCFF278GJK GM12878 NFYA narrowPeak Transcription Factor ChIP-seq Peaks of NFYA in GM12878 from ENCODE 3 (ENCFF278GJK) 0 155 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFYA in GM12878 from ENCODE 3 (ENCFF278GJK)\ parent encTfChipPk off\ shortLabel GM12878 NFYA\ subGroups cellType=GM12878 factor=NFYA\ track encTfChipPkENCFF278GJK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward 0 155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward 1 155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471065v1 HG01175.pat chain GCA_018471065.1 HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 155 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471065.1\ parent hprcChainNetViewchain off\ priority 45\ shortLabel HG01175.pat\ subGroups view=chain sample=s045 population=amr subpop=pur hap=pat\ track chainHprcGCA_018471065v1\ type chain GCA_018471065.1\ wgEncodeRegDnaseUwHmvecllyHotspot HMVEC-LLy Ht bigBed 6 + HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Hotspots from ENCODE 0 155 85 255 243 170 255 249 1 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-LLy Ht\ subGroups view=b_Hot cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecllyHotspot\ type bigBed 6 +\ pancDelta454 Pancreas - Delta - Z00000454 bigWig Methylation Atlas: Pancreas - Delta - Z00000454 2 155 240 230 140 247 242 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDelta454.bw\ color 240,230,140\ longLabel Methylation Atlas: Pancreas - Delta - Z00000454\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 155\ shortLabel Pancreas - Delta - Z00000454\ subGroups cellType=Pancreas-Delta dataType=Replicate\ track pancDelta454\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF867EIA_ENCFF842QQE_ENCFF428HQD_ENCFF161AWO ENCFF867EIA_ENCFF842QQE_ENCFF428HQD_ENCFF161AWO bigBed 9 + 5 Spleen, female adult (59 years): (1) cCREs 4 156 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF867EIA_ENCFF842QQE_ENCFF428HQD_ENCFF161AWO.bb\ longLabel Spleen, female adult (59 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 141\ shortLabel ENCFF867EIA_ENCFF842QQE_ENCFF428HQD_ENCFF161AWO\ subGroups organ=spleen view=cCREs_view simpleBiosample=spleen-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCcres\ track ENCFF867EIA_ENCFF842QQE_ENCFF428HQD_ENCFF161AWO\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF456HGP ENCSR000BHD Signal bigWig GM12878 PAX5 ENCSR000BHD signal 2 156 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d9d445c5-0c86-4870-a722-83b7af93b3a9/ENCFF456HGP.bigWig\ color 254,75,173\ longLabel GM12878 PAX5 ENCSR000BHD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHD Signal\ track wgEncodeReg4TfChip_ENCFF456HGP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF387KUV ENCSR000DPX Signal bigWig AG10803 H3K4me3 signal 2 156 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/f723dd4e-1f2b-484e-8f1f-8bbacf787cb1/ENCFF387KUV.bigWig\ color 255,0,0\ longLabel AG10803 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPX Signal\ track wgEncodeReg4Epigenetics_ENCFF387KUV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF325ZFM ENCSR075ZTG - strand bigWig Pancreas tissue male adult (26 years) - strand total RNA-seq signal 2 156 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/4237dcfa-6c87-4453-9e5b-3119708046ae/ENCFF325ZFM.bigWig\ color 175,100,41\ longLabel Pancreas tissue male adult (26 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR075ZTG - strand\ track wgEncodeReg4RnaSeq_ENCFF325ZFM\ type bigWig\ visibility full\ encTfChipPkENCFF510NDO GM12878 NFYB narrowPeak Transcription Factor ChIP-seq Peaks of NFYB in GM12878 from ENCODE 3 (ENCFF510NDO) 0 156 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NFYB in GM12878 from ENCODE 3 (ENCFF510NDO)\ parent encTfChipPk off\ shortLabel GM12878 NFYB\ subGroups cellType=GM12878 factor=NFYB\ track encTfChipPkENCFF510NDO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse 0 156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse 1 156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep1.CNhs13661.13336-143C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep1_CNhs13661_13336-143C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13336-143C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep1_CNhs13661_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13336-143C6\ urlLabel FANTOM5 Details:\ netHprcGCA_018471065v1 HG01175.pat netAlign GCA_018471065.1 chainHprcGCA_018471065v1 HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chain Nets 1 156 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01175.pat HG01175.alt.pat.f1_v2 (May 2021 GCA_018471065.1_HG01175.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471065.1\ parent hprcChainNetViewnet off\ priority 45\ shortLabel HG01175.pat\ subGroups view=net sample=s045 population=amr subpop=pur hap=pat\ track netHprcGCA_018471065v1\ type netAlign GCA_018471065.1 chainHprcGCA_018471065v1\ wgEncodeRegDnaseUwHmvecdneoHotspot HMVEC-dNeo Ht bigBed 6 + HMVEC-dNeo dermal microvascular endo cell, neonate DNaseI Hotspots from ENCODE 0 156 85 255 244 170 255 249 1 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal microvascular endo cell, neonate DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dNeo Ht\ subGroups view=b_Hot cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdneoHotspot\ type bigBed 6 +\ pancDelta457 Pancreas - Delta - Z00000457 bigWig Methylation Atlas: Pancreas - Delta - Z00000457 2 156 240 230 140 247 242 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDelta457.bw\ color 240,230,140\ longLabel Methylation Atlas: Pancreas - Delta - Z00000457\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 156\ shortLabel Pancreas - Delta - Z00000457\ subGroups cellType=Pancreas-Delta dataType=Replicate\ track pancDelta457\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF384IMH_ENCFF283ZMI_ENCFF732NXU_ENCFF919OEF ENCFF384IMH_ENCFF283ZMI_ENCFF732NXU_ENCFF919OEF bigBed 9 + 5 Stomach, female adult (51 years): (1) cCREs 4 157 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF384IMH_ENCFF283ZMI_ENCFF732NXU_ENCFF919OEF.bb\ longLabel Stomach, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 143\ shortLabel ENCFF384IMH_ENCFF283ZMI_ENCFF732NXU_ENCFF919OEF\ subGroups organ=stomach view=cCREs_view simpleBiosample=stomach-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF384IMH_ENCFF283ZMI_ENCFF732NXU_ENCFF919OEF\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF503GOV ENCSR000BHJ Peak bigBed 5 GM12878 PAX5 peaks 4 157 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/2909737a-d124-464a-9de0-ab712264ad91/ENCFF503GOV.bigBed\ labelFields none\ longLabel GM12878 PAX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF503GOV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF639DMR ENCSR000DPY Peak bigBed 5 Fibroblast of the aortic adventitia female CTCF peak 4 157 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/af21bf9e-0d0f-44bc-a6b7-597acb9b5f27/ENCFF639DMR.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of the aortic adventitia female CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPY Peak\ track wgEncodeReg4Epigenetics_ENCFF639DMR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF622PHJ ENCSR077EAM + strand bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years) + strand total RNA-seq signal 2 157 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/452d6b78-a3ec-489e-b9f1-abfffb09f8b1/ENCFF622PHJ.bigWig\ color 254,75,173\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR077EAM + strand\ track wgEncodeReg4RnaSeq_ENCFF622PHJ\ type bigWig\ visibility full\ encTfChipPkENCFF434HVY GM12878 NR2C2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C2 in GM12878 from ENCODE 3 (ENCFF434HVY) 0 157 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NR2C2 in GM12878 from ENCODE 3 (ENCFF434HVY)\ parent encTfChipPk off\ shortLabel GM12878 NR2C2\ subGroups cellType=GM12878 factor=NR2C2\ track encTfChipPkENCFF434HVY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward 0 157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward 1 157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471075v1 HG01106.pat chain GCA_018471075.1 HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 157 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471075.1\ parent hprcChainNetViewchain off\ priority 46\ shortLabel HG01106.pat\ subGroups view=chain sample=s046 population=amr subpop=pur hap=pat\ track chainHprcGCA_018471075v1\ type chain GCA_018471075.1\ wgEncodeRegDnaseUwHmvecdadHotspot HMVEC-dAd Ht bigBed 6 + HMVEC-dAd dermal microvascular endothelial cell DNaseI Hotspots from ENCODE 0 157 85 255 246 170 255 250 1 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dAd Ht\ subGroups view=b_Hot cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdadHotspot\ type bigBed 6 +\ pancAcinarMerged Pancreas Acinar Cells Merged bigWig Methylation Atlas: Pancreas Acinar Cells Merged Samples 2 157 189 183 107 222 219 181 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAcinarMerged.bw\ color 189,183,107\ longLabel Methylation Atlas: Pancreas Acinar Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 157\ shortLabel Pancreas Acinar Cells Merged\ subGroups cellType=Pancreas-Acinar dataType=Merged\ track pancAcinarMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF164EEU_ENCFF391KDD_ENCFF493RLF_ENCFF034PJC ENCFF164EEU_ENCFF391KDD_ENCFF493RLF_ENCFF034PJC bigBed 9 + 5 Stomach, male adult (54 years): (1) cCREs 4 158 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF164EEU_ENCFF391KDD_ENCFF493RLF_ENCFF034PJC.bb\ longLabel Stomach, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 146\ shortLabel ENCFF164EEU_ENCFF391KDD_ENCFF493RLF_ENCFF034PJC\ subGroups organ=stomach view=cCREs_view simpleBiosample=stomach-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF164EEU_ENCFF391KDD_ENCFF493RLF_ENCFF034PJC\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF397VPJ ENCSR000BHJ Signal bigWig GM12878 PAX5 ENCSR000BHJ signal 2 158 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/2b7280c0-0e55-413e-8fe0-c5a17546d79b/ENCFF397VPJ.bigWig\ color 254,75,173\ longLabel GM12878 PAX5 ENCSR000BHJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHJ Signal\ track wgEncodeReg4TfChip_ENCFF397VPJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF674AZI ENCSR000DPY Signal bigWig Fibroblast of the aortic adventitia female CTCF signal 2 158 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/5fa9ee91-cab6-482d-8d75-607bd9f15844/ENCFF674AZI.bigWig\ color 0,176,240\ longLabel Fibroblast of the aortic adventitia female CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DPY Signal\ track wgEncodeReg4Epigenetics_ENCFF674AZI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF189YZU ENCSR077EAM - strand bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years) - strand total RNA-seq signal 2 158 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/23f41c2d-9d26-4564-ad4d-4ad4ff142b00/ENCFF189YZU.bigWig\ color 254,75,173\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult (21 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR077EAM - strand\ track wgEncodeReg4RnaSeq_ENCFF189YZU\ type bigWig\ visibility full\ encTfChipPkENCFF652BRY GM12878 NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in GM12878 from ENCODE 3 (ENCFF652BRY) 0 158 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in GM12878 from ENCODE 3 (ENCFF652BRY)\ parent encTfChipPk off\ shortLabel GM12878 NRF1\ subGroups cellType=GM12878 factor=NRF1\ track encTfChipPkENCFF652BRY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse 0 158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse 1 158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep2.CNhs13721.13348-143D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep2_CNhs13721_13348-143D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13348-143D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep2_CNhs13721_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13348-143D9\ urlLabel FANTOM5 Details:\ netHprcGCA_018471075v1 HG01106.pat netAlign GCA_018471075.1 chainHprcGCA_018471075v1 HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chain Nets 1 158 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01106.pat HG01106.alt.pat.f1_v2 (May 2021 GCA_018471075.1_HG01106.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471075.1\ parent hprcChainNetViewnet off\ priority 46\ shortLabel HG01106.pat\ subGroups view=net sample=s046 population=amr subpop=pur hap=pat\ track netHprcGCA_018471075v1\ type netAlign GCA_018471075.1 chainHprcGCA_018471075v1\ wgEncodeRegDnaseUwHrcepicHotspot HRCEpiC Ht bigBed 6 + HRCEpiC renal cortical epithelium DNaseI Hotspots from ENCODE 0 158 85 251 255 170 253 255 1 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRCEpiC Ht\ subGroups view=b_Hot cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrcepicHotspot\ type bigBed 6 +\ pancAcinar0QX Pancreas - Acinar - Z000000QX bigWig Methylation Atlas: Pancreas - Acinar - Z000000QX 2 158 189 183 107 222 219 181 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAcinar0QX.bw\ color 189,183,107\ longLabel Methylation Atlas: Pancreas - Acinar - Z000000QX\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 158\ shortLabel Pancreas - Acinar - Z000000QX\ subGroups cellType=Pancreas-Acinar dataType=Replicate\ track pancAcinar0QX\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF493HHP_ENCFF641DNV_ENCFF225PPI_ENCFF807KJZ ENCFF493HHP_ENCFF641DNV_ENCFF225PPI_ENCFF807KJZ bigBed 9 + 5 Stomach, female adult (53 years): (1) cCREs 4 159 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF493HHP_ENCFF641DNV_ENCFF225PPI_ENCFF807KJZ.bb\ longLabel Stomach, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 144\ shortLabel ENCFF493HHP_ENCFF641DNV_ENCFF225PPI_ENCFF807KJZ\ subGroups organ=stomach view=cCREs_view simpleBiosample=stomach-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF493HHP_ENCFF641DNV_ENCFF225PPI_ENCFF807KJZ\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF620LDJ ENCSR000BHK Peak bigBed 5 GM12878 SP1 peaks 4 159 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/18/c690697b-f60b-4d13-a196-2b02985738a6/ENCFF620LDJ.bigBed\ labelFields none\ longLabel GM12878 SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF620LDJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF852POF ENCSR000DQA Peak bigBed 5 Fibroblast of the aortic adventitia female H3K4me3 peak 4 159 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/b08d66c5-bfd8-4c73-8b66-6d84a4bade0a/ENCFF852POF.bigBed\ color 255,0,0\ longLabel Fibroblast of the aortic adventitia female H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQA Peak\ track wgEncodeReg4Epigenetics_ENCFF852POF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF402API ENCSR078WNY + strand bigWig Dorsolateral prefrontal cortex tissue female adult (78 years) + strand total RNA-seq signal 2 159 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/ed80c379-f8bc-4288-aeda-a6d75125b339/ENCFF402API.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (78 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR078WNY + strand\ track wgEncodeReg4RnaSeq_ENCFF402API\ type bigWig\ visibility full\ encTfChipPkENCFF946SAG GM12878 PAX5 narrowPeak Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF946SAG) 0 159 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PAX5 in GM12878 from ENCODE 3 (ENCFF946SAG)\ parent encTfChipPk off\ shortLabel GM12878 PAX5\ subGroups cellType=GM12878 factor=PAX5\ track encTfChipPkENCFF946SAG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day09Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward 0 159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day09Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward 1 159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ chainHprcGCA_018471105v1 HG00741.pat chain GCA_018471105.1 HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 159 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018471105.1\ parent hprcChainNetViewchain off\ priority 49\ shortLabel HG00741.pat\ subGroups view=chain sample=s049 population=amr subpop=pur hap=pat\ track chainHprcGCA_018471105v1\ type chain GCA_018471105.1\ wgEncodeRegDnaseUwHreHotspot HRE Ht bigBed 6 + HRE renal epithelium DNaseI Hotspots from ENCODE 0 159 85 248 255 170 251 255 1 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRE Ht\ subGroups view=b_Hot cellType=HRE treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHreHotspot\ type bigBed 6 +\ pancAcinar43W Pancreas - Acinar - Z0000043W bigWig Methylation Atlas: Pancreas - Acinar - Z0000043W 2 159 189 183 107 222 219 181 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAcinar43W.bw\ color 189,183,107\ longLabel Methylation Atlas: Pancreas - Acinar - Z0000043W\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 159\ shortLabel Pancreas - Acinar - Z0000043W\ subGroups cellType=Pancreas-Acinar dataType=Replicate\ track pancAcinar43W\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF017QTW_ENCFF751MDE_ENCFF975CDE_ENCFF324HRF ENCFF017QTW_ENCFF751MDE_ENCFF975CDE_ENCFF324HRF bigBed 9 + 5 Stomach, male adult (37 years): (1) cCREs 4 160 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF017QTW_ENCFF751MDE_ENCFF975CDE_ENCFF324HRF.bb\ longLabel Stomach, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 145\ shortLabel ENCFF017QTW_ENCFF751MDE_ENCFF975CDE_ENCFF324HRF\ subGroups organ=stomach view=cCREs_view simpleBiosample=stomach-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF017QTW_ENCFF751MDE_ENCFF975CDE_ENCFF324HRF\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF952WGS ENCSR000BHK Signal bigWig GM12878 SP1 ENCSR000BHK signal 2 160 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f522ca08-c5b6-41b5-adeb-6c4e11e5ec3b/ENCFF952WGS.bigWig\ color 254,75,173\ longLabel GM12878 SP1 ENCSR000BHK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHK Signal\ track wgEncodeReg4TfChip_ENCFF952WGS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF979EBB ENCSR000DQA Signal bigWig Fibroblast of the aortic adventitia female H3K4me3 signal 2 160 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/abbaf63b-fe52-4056-b46a-997207f060e7/ENCFF979EBB.bigWig\ color 255,0,0\ longLabel Fibroblast of the aortic adventitia female H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQA Signal\ track wgEncodeReg4Epigenetics_ENCFF979EBB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF347WST ENCSR078WNY - strand bigWig Dorsolateral prefrontal cortex tissue female adult (78 years) - strand total RNA-seq signal 2 160 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/6db02474-26f5-4d25-9254-13bc9faec8c1/ENCFF347WST.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (78 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR078WNY - strand\ track wgEncodeReg4RnaSeq_ENCFF347WST\ type bigWig\ visibility full\ encTfChipPkENCFF992JWY GM12878 PAX8 narrowPeak Transcription Factor ChIP-seq Peaks of PAX8 in GM12878 from ENCODE 3 (ENCFF992JWY) 0 160 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PAX8 in GM12878 from ENCODE 3 (ENCFF992JWY)\ parent encTfChipPk off\ shortLabel GM12878 PAX8\ subGroups cellType=GM12878 factor=PAX8\ track encTfChipPkENCFF992JWY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_rev Hes3-gfpCardiomyocyticInduction_Day09Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse 0 160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_rev Hes3-gfpCardiomyocyticInduction_Day09Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse 1 160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day09%2c%20biol_rep3.CNhs13733.13360-143F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day09, biol_rep3_CNhs13733_13360-143F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13360-143F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay09BiolRep3_CNhs13733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13360-143F3\ urlLabel FANTOM5 Details:\ netHprcGCA_018471105v1 HG00741.pat netAlign GCA_018471105.1 chainHprcGCA_018471105v1 HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chain Nets 1 160 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00741.pat HG00741.alt.pat.f1_v2 (May 2021 GCA_018471105.1_HG00741.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018471105.1\ parent hprcChainNetViewnet off\ priority 49\ shortLabel HG00741.pat\ subGroups view=net sample=s049 population=amr subpop=pur hap=pat\ track netHprcGCA_018471105v1\ type netAlign GCA_018471105.1 chainHprcGCA_018471105v1\ wgEncodeRegDnaseUwNhekHotspot NHEK Ht bigBed 6 + NHEK epidermal keratinocyte DNaseI Hotspots from ENCODE 0 160 85 238 255 170 246 255 1 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel NHEK Ht\ subGroups view=b_Hot cellType=NHEK treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhekHotspot\ type bigBed 6 +\ pancAcinar43X Pancreas - Acinar - Z0000043X bigWig Methylation Atlas: Pancreas - Acinar - Z0000043X 2 160 189 183 107 222 219 181 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAcinar43X.bw\ color 189,183,107\ longLabel Methylation Atlas: Pancreas - Acinar - Z0000043X\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 160\ shortLabel Pancreas - Acinar - Z0000043X\ subGroups cellType=Pancreas-Acinar dataType=Replicate\ track pancAcinar43X\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF428COP_ENCFF665CXY_ENCFF246QNM_ENCFF245HIM ENCFF428COP_ENCFF665CXY_ENCFF246QNM_ENCFF245HIM bigBed 9 + 5 Testis, male adult (54 years): (1) cCREs 4 161 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF428COP_ENCFF665CXY_ENCFF246QNM_ENCFF245HIM.bb\ longLabel Testis, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 148\ shortLabel ENCFF428COP_ENCFF665CXY_ENCFF246QNM_ENCFF245HIM\ subGroups organ=testis view=cCREs_view simpleBiosample=testis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF428COP_ENCFF665CXY_ENCFF246QNM_ENCFF245HIM\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF429RUE ENCSR000BHM Peak bigBed 5 H1 REST peaks 4 161 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/19aa5916-c902-440f-b428-d6ce1f035199/ENCFF429RUE.bigBed\ labelFields none\ longLabel H1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF429RUE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF527BOF ENCSR000DQB Peak bigBed 5 BE2C H3K4me3 peak 4 161 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/c6d57569-04a3-46aa-8e4b-23df10582158/ENCFF527BOF.bigBed\ color 255,0,0\ longLabel BE2C H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQB Peak\ track wgEncodeReg4Epigenetics_ENCFF527BOF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF847OUD ENCSR080HPT + strand bigWig Omental fat pad tissue male adult (54 years) + strand total RNA-seq signal 2 161 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/1bcd6ea2-87dd-4cef-aa79-50be0154daf6/ENCFF847OUD.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR080HPT + strand\ track wgEncodeReg4RnaSeq_ENCFF847OUD\ type bigWig\ visibility full\ encTfChipPkENCFF926LHG GM12878 PBX3 narrowPeak Transcription Factor ChIP-seq Peaks of PBX3 in GM12878 from ENCODE 3 (ENCFF926LHG) 0 161 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PBX3 in GM12878 from ENCODE 3 (ENCFF926LHG)\ parent encTfChipPk off\ shortLabel GM12878 PBX3\ subGroups cellType=GM12878 factor=PBX3\ track encTfChipPkENCFF926LHG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward 0 161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward 1 161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472715v1 HG00735.pat chain GCA_018472715.1 HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 161 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472715.1\ parent hprcChainNetViewchain off\ priority 52\ shortLabel HG00735.pat\ subGroups view=chain sample=s052 population=amr subpop=pur hap=pat\ track chainHprcGCA_018472715v1\ type chain GCA_018472715.1\ pancAcinar43Y Pancreas - Acinar - Z0000043Y bigWig Methylation Atlas: Pancreas - Acinar - Z0000043Y 2 161 189 183 107 222 219 181 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancAcinar43Y.bw\ color 189,183,107\ longLabel Methylation Atlas: Pancreas - Acinar - Z0000043Y\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 161\ shortLabel Pancreas - Acinar - Z0000043Y\ subGroups cellType=Pancreas-Acinar dataType=Replicate\ track pancAcinar43Y\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwSaecHotspot SAEC Ht bigBed 6 + SAEC small airway epithelium DNaseI Hotspots from ENCODE 0 161 85 231 255 170 243 255 1 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SAEC Ht\ subGroups view=b_Hot cellType=SAEC treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwSaecHotspot\ type bigBed 6 +\ ENCFF589CRI_ENCFF229BGF_ENCFF487SXN_ENCFF453LVK ENCFF589CRI_ENCFF229BGF_ENCFF487SXN_ENCFF453LVK bigBed 9 + 5 Testis, male adult (37 years): (1) cCREs 4 162 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF589CRI_ENCFF229BGF_ENCFF487SXN_ENCFF453LVK.bb\ longLabel Testis, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 147\ shortLabel ENCFF589CRI_ENCFF229BGF_ENCFF487SXN_ENCFF453LVK\ subGroups organ=testis view=cCREs_view simpleBiosample=testis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF589CRI_ENCFF229BGF_ENCFF487SXN_ENCFF453LVK\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF424VJZ ENCSR000BHM Signal bigWig H1 REST ENCSR000BHM signal 2 162 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/73381b42-8588-49aa-a580-9de5ff214c38/ENCFF424VJZ.bigWig\ color 118,158,101\ longLabel H1 REST ENCSR000BHM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHM Signal\ track wgEncodeReg4TfChip_ENCFF424VJZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF178RNN ENCSR000DQB Signal bigWig BE2C H3K4me3 signal 2 162 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/bb321333-97dc-4b12-b126-fb46108c6d63/ENCFF178RNN.bigWig\ color 255,0,0\ longLabel BE2C H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQB Signal\ track wgEncodeReg4Epigenetics_ENCFF178RNN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF725EWR ENCSR080HPT - strand bigWig Omental fat pad tissue male adult (54 years) - strand total RNA-seq signal 2 162 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/c493c6d4-4e8e-4a5c-a919-38c3b8a3389c/ENCFF725EWR.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR080HPT - strand\ track wgEncodeReg4RnaSeq_ENCFF725EWR\ type bigWig\ visibility full\ encTfChipPkENCFF335ADU GM12878 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in GM12878 from ENCODE 3 (ENCFF335ADU) 0 162 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in GM12878 from ENCODE 3 (ENCFF335ADU)\ parent encTfChipPk off\ shortLabel GM12878 PKNOX1\ subGroups cellType=GM12878 factor=PKNOX1\ track encTfChipPkENCFF335ADU\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse 0 162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse 1 162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep1.CNhs13662.13337-143C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep1_CNhs13662_13337-143C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13337-143C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep1_CNhs13662_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13337-143C7\ urlLabel FANTOM5 Details:\ netHprcGCA_018472715v1 HG00735.pat netAlign GCA_018472715.1 chainHprcGCA_018472715v1 HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chain Nets 1 162 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00735.pat HG00735.alt.pat.f1_v2 (May 2021 GCA_018472715.1_HG00735.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472715.1\ parent hprcChainNetViewnet off\ priority 52\ shortLabel HG00735.pat\ subGroups view=net sample=s052 population=amr subpop=pur hap=pat\ track netHprcGCA_018472715v1\ type netAlign GCA_018472715.1 chainHprcGCA_018472715v1\ pancDuctMerged Pancreas Duct Cells Merged bigWig Methylation Atlas: Pancreas Duct Cells Merged Samples 2 162 238 232 170 246 243 212 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDuctMerged.bw\ color 238,232,170\ longLabel Methylation Atlas: Pancreas Duct Cells Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 162\ shortLabel Pancreas Duct Cells Merged\ subGroups cellType=Pancreas-Duct dataType=Merged\ track pancDuctMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwPrecHotspot PrEC Ht bigBed 6 + PrEC prostate epithelium DNaseI Hotspots from ENCODE 0 162 85 226 255 170 240 255 1 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel PrEC Ht\ subGroups view=b_Hot cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ track wgEncodeRegDnaseUwPrecHotspot\ type bigBed 6 +\ ENCFF379EHP_ENCFF321LZL_ENCFF774RLX_ENCFF397CJU ENCFF379EHP_ENCFF321LZL_ENCFF774RLX_ENCFF397CJU bigBed 9 + 5 Thyroid gland, female adult (51 years): (1) cCREs 4 163 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF379EHP_ENCFF321LZL_ENCFF774RLX_ENCFF397CJU.bb\ longLabel Thyroid gland, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 150\ shortLabel ENCFF379EHP_ENCFF321LZL_ENCFF774RLX_ENCFF397CJU\ subGroups organ=thyroid view=cCREs_view simpleBiosample=thyroid_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF379EHP_ENCFF321LZL_ENCFF774RLX_ENCFF397CJU\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF566JSR ENCSR000BHN Peak bigBed 5 H1 POLR2A peaks 4 163 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/7eca34b0-b587-43f2-ba4b-9a553348e957/ENCFF566JSR.bigBed\ labelFields none\ longLabel H1 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF566JSR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF757SRF ENCSR000DQD Peak bigBed 5 BE2C CTCF peak 4 163 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/4e17de95-5074-44a8-b3b7-61ae61621e58/ENCFF757SRF.bigBed\ color 0,176,240\ labelFields none\ longLabel BE2C CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQD Peak\ track wgEncodeReg4Epigenetics_ENCFF757SRF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF957UTK ENCSR080VMJ + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal 2 163 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/08a36654-17b4-4608-a153-5c4d743f28ba/ENCFF957UTK.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR080VMJ + strand\ track wgEncodeReg4RnaSeq_ENCFF957UTK\ type bigWig\ visibility full\ encTfChipPkENCFF455ZLJ GM12878 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12878 from ENCODE 3 (ENCFF455ZLJ) 0 163 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12878 from ENCODE 3 (ENCFF455ZLJ)\ parent encTfChipPk off\ shortLabel GM12878 POLR2A\ subGroups cellType=GM12878 factor=POLR2A\ track encTfChipPkENCFF455ZLJ\ wgEncodeRegDnaseUwHeepicHotspot HEEpiC Ht bigBed 6 + HEEpiC esophageal epithelium DNaseI Hotspots from ENCODE 0 163 85 220 255 170 237 255 1 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HEEpiC Ht\ subGroups view=b_Hot cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ track wgEncodeRegDnaseUwHeepicHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward 0 163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward 1 163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ chainHprcGCA_018472725v1 HG01071.pat chain GCA_018472725.1 HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 163 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018472725.1\ parent hprcChainNetViewchain off\ priority 53\ shortLabel HG01071.pat\ subGroups view=chain sample=s053 population=amr subpop=pur hap=pat\ track chainHprcGCA_018472725v1\ type chain GCA_018472725.1\ pancDuct0QZ Pancreas - Duct - Z000000QZ bigWig Methylation Atlas: Pancreas - Duct - Z000000QZ 2 163 238 232 170 246 243 212 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDuct0QZ.bw\ color 238,232,170\ longLabel Methylation Atlas: Pancreas - Duct - Z000000QZ\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 163\ shortLabel Pancreas - Duct - Z000000QZ\ subGroups cellType=Pancreas-Duct dataType=Replicate\ track pancDuct0QZ\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF017LRG_ENCFF229BVH_ENCFF573DJV_ENCFF510THG ENCFF017LRG_ENCFF229BVH_ENCFF573DJV_ENCFF510THG bigBed 9 + 5 Thyroid gland, male adult (54 years): (1) cCREs 4 164 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF017LRG_ENCFF229BVH_ENCFF573DJV_ENCFF510THG.bb\ longLabel Thyroid gland, male adult (54 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 153\ shortLabel ENCFF017LRG_ENCFF229BVH_ENCFF573DJV_ENCFF510THG\ subGroups organ=thyroid view=cCREs_view simpleBiosample=thyroid_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCcres\ track ENCFF017LRG_ENCFF229BVH_ENCFF573DJV_ENCFF510THG\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF478SZO ENCSR000BHO Peak bigBed 5 H1 TAF1 peaks 4 164 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/608403cf-fc1d-4448-9767-5fd2b8c2b79f/ENCFF478SZO.bigBed\ labelFields none\ longLabel H1 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF478SZO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF434PKZ ENCSR000DQD Signal bigWig BE2C CTCF signal 2 164 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ac2a6ea5-cae0-4e90-b6f9-e4d2d7f773e8/ENCFF434PKZ.bigWig\ color 0,176,240\ longLabel BE2C CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQD Signal\ track wgEncodeReg4Epigenetics_ENCFF434PKZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF814MGD ENCSR080VMJ - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal 2 164 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/d67bd401-e3b6-4d2c-911e-ae2281991c48/ENCFF814MGD.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR080VMJ - strand\ track wgEncodeReg4RnaSeq_ENCFF814MGD\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm06990Hotspot GM06990 Ht bigBed 6 + GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE 0 164 85 205 255 170 230 255 1 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM06990 Ht\ subGroups view=b_Hot cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm06990Hotspot\ type bigBed 6 +\ encTfChipPkENCFF654EGO GM12878 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in GM12878 from ENCODE 3 (ENCFF654EGO) 0 164 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in GM12878 from ENCODE 3 (ENCFF654EGO)\ parent encTfChipPk off\ shortLabel GM12878 RAD21\ subGroups cellType=GM12878 factor=RAD21\ track encTfChipPkENCFF654EGO\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse 0 164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse 1 164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep2.CNhs13722.13349-143E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep2_CNhs13722_13349-143E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13349-143E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep2_CNhs13722_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13349-143E1\ urlLabel FANTOM5 Details:\ netHprcGCA_018472725v1 HG01071.pat netAlign GCA_018472725.1 chainHprcGCA_018472725v1 HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chain Nets 1 164 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01071.pat HG01071.alt.pat.f1_v2 (May 2021 GCA_018472725.1_HG01071.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018472725.1\ parent hprcChainNetViewnet off\ priority 53\ shortLabel HG01071.pat\ subGroups view=net sample=s053 population=amr subpop=pur hap=pat\ track netHprcGCA_018472725v1\ type netAlign GCA_018472725.1 chainHprcGCA_018472725v1\ pancDuct43T Pancreas - Duct - Z0000043T bigWig Methylation Atlas: Pancreas - Duct - Z0000043T 2 164 238 232 170 246 243 212 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDuct43T.bw\ color 238,232,170\ longLabel Methylation Atlas: Pancreas - Duct - Z0000043T\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 164\ shortLabel Pancreas - Duct - Z0000043T\ subGroups cellType=Pancreas-Duct dataType=Replicate\ track pancDuct43T\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF047YGB_ENCFF145RER_ENCFF050PLB_ENCFF603TNI ENCFF047YGB_ENCFF145RER_ENCFF050PLB_ENCFF603TNI bigBed 9 + 5 Thyroid gland, female adult (53 years): (1) cCREs 4 165 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF047YGB_ENCFF145RER_ENCFF050PLB_ENCFF603TNI.bb\ longLabel Thyroid gland, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 151\ shortLabel ENCFF047YGB_ENCFF145RER_ENCFF050PLB_ENCFF603TNI\ subGroups organ=thyroid view=cCREs_view simpleBiosample=thyroid_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF047YGB_ENCFF145RER_ENCFF050PLB_ENCFF603TNI\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF856RPW ENCSR000BHO Signal bigWig H1 TAF1 ENCSR000BHO signal 2 165 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/21bee08f-2316-4ecf-bf2a-f5b0069fd114/ENCFF856RPW.bigWig\ color 118,158,101\ longLabel H1 TAF1 ENCSR000BHO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHO Signal\ track wgEncodeReg4TfChip_ENCFF856RPW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF274MOR ENCSR000DQH Peak bigBed 5 BJ H3K4me3 peak 4 165 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/43b30bed-a3f7-4620-9c06-dcdd40a2c88f/ENCFF274MOR.bigBed\ color 255,0,0\ longLabel BJ H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQH Peak\ track wgEncodeReg4Epigenetics_ENCFF274MOR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF162VJY ENCSR082XSF + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 165 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/2071c003-c045-41cf-85f4-a811a782f47e/ENCFF162VJY.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR082XSF + strand\ track wgEncodeReg4RnaSeq_ENCFF162VJY\ type bigWig\ visibility full\ encTfChipPkENCFF996NBR GM12878 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in GM12878 from ENCODE 3 (ENCFF996NBR) 0 165 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in GM12878 from ENCODE 3 (ENCFF996NBR)\ parent encTfChipPk off\ shortLabel GM12878 RAD51\ subGroups cellType=GM12878 factor=RAD51\ track encTfChipPkENCFF996NBR\ wgEncodeRegDnaseUwHepg2Hotspot HepG2 Ht bigBed 6 + HepG2 hepatocellular carcinoma cell line DNaseI Hotspots from ENCODE 0 165 85 198 255 170 226 255 1 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HepG2 Ht\ subGroups view=b_Hot cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ track wgEncodeRegDnaseUwHepg2Hotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day10Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward 0 165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day10Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward 1 165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504045v1 HG01243.pat chain GCA_018504045.1 HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 165 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504045.1\ parent hprcChainNetViewchain off\ priority 55\ shortLabel HG01243.pat\ subGroups view=chain sample=s055 population=amr subpop=pur hap=pat\ track chainHprcGCA_018504045v1\ type chain GCA_018504045.1\ pancDuct43U Pancreas - Duct - Z0000043U bigWig Methylation Atlas: Pancreas - Duct - Z0000043U 2 165 238 232 170 246 243 212 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDuct43U.bw\ color 238,232,170\ longLabel Methylation Atlas: Pancreas - Duct - Z0000043U\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 165\ shortLabel Pancreas - Duct - Z0000043U\ subGroups cellType=Pancreas-Duct dataType=Replicate\ track pancDuct43U\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwCaco2Hotspot Caco-2 Ht bigBed 6 + Caco-2 colon adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 166 85 193 255 170 224 255 1 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Caco-2 Ht\ subGroups view=b_Hot cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwCaco2Hotspot\ type bigBed 6 +\ ENCFF211HIT_ENCFF501SGE_ENCFF546UQS_ENCFF874CKO ENCFF211HIT_ENCFF501SGE_ENCFF546UQS_ENCFF874CKO bigBed 9 + 5 Thyroid gland, male adult (37 years): (1) cCREs 4 166 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF211HIT_ENCFF501SGE_ENCFF546UQS_ENCFF874CKO.bb\ longLabel Thyroid gland, male adult (37 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 152\ shortLabel ENCFF211HIT_ENCFF501SGE_ENCFF546UQS_ENCFF874CKO\ subGroups organ=thyroid view=cCREs_view simpleBiosample=thyroid_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCcres\ track ENCFF211HIT_ENCFF501SGE_ENCFF546UQS_ENCFF874CKO\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF796NIA ENCSR000BHP Peak bigBed 5 HepG2 FOSL2 peaks 4 166 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/a2ff1fe1-def7-40ab-82cd-90e9ef39090c/ENCFF796NIA.bigBed\ labelFields none\ longLabel HepG2 FOSL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF796NIA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF631GKD ENCSR000DQH Signal bigWig BJ H3K4me3 signal 2 166 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/08cac94a-8977-4f96-9b86-9c31bde57145/ENCFF631GKD.bigWig\ color 255,0,0\ longLabel BJ H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQH Signal\ track wgEncodeReg4Epigenetics_ENCFF631GKD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF016BVV ENCSR082XSF - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 166 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/d3790bc9-aeeb-48b4-8b5c-d9f80f68ad0f/ENCFF016BVV.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR082XSF - strand\ track wgEncodeReg4RnaSeq_ENCFF016BVV\ type bigWig\ visibility full\ encTfChipPkENCFF034OSV GM12878 RB1 narrowPeak Transcription Factor ChIP-seq Peaks of RB1 in GM12878 from ENCODE 3 (ENCFF034OSV) 0 166 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RB1 in GM12878 from ENCODE 3 (ENCFF034OSV)\ parent encTfChipPk off\ shortLabel GM12878 RB1\ subGroups cellType=GM12878 factor=RB1\ track encTfChipPkENCFF034OSV\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_rev Hes3-gfpCardiomyocyticInduction_Day10Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse 0 166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_rev Hes3-gfpCardiomyocyticInduction_Day10Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse 1 166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day10%2c%20biol_rep3.CNhs13734.13361-143F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day10, biol_rep3_CNhs13734_13361-143F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13361-143F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day10Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay10BiolRep3_CNhs13734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13361-143F4\ urlLabel FANTOM5 Details:\ netHprcGCA_018504045v1 HG01243.pat netAlign GCA_018504045.1 chainHprcGCA_018504045v1 HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chain Nets 1 166 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01243.pat HG01243.alt.pat.f1_v2 (May 2021 GCA_018504045.1_HG01243.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504045.1\ parent hprcChainNetViewnet off\ priority 55\ shortLabel HG01243.pat\ subGroups view=net sample=s055 population=amr subpop=pur hap=pat\ track netHprcGCA_018504045v1\ type netAlign GCA_018504045.1 chainHprcGCA_018504045v1\ pancDuct43V Pancreas - Duct - Z0000043V bigWig Methylation Atlas: Pancreas - Duct - Z0000043V 2 166 238 232 170 246 243 212 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/pancDuct43V.bw\ color 238,232,170\ longLabel Methylation Atlas: Pancreas - Duct - Z0000043V\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 166\ shortLabel Pancreas - Duct - Z0000043V\ subGroups cellType=Pancreas-Duct dataType=Replicate\ track pancDuct43V\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF757GHL_ENCFF432PYK_ENCFF658XKZ_ENCFF179RSE ENCFF757GHL_ENCFF432PYK_ENCFF658XKZ_ENCFF179RSE bigBed 9 + 5 HeLa-S3: (1) cCREs 4 167 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF757GHL_ENCFF432PYK_ENCFF658XKZ_ENCFF179RSE.bb\ longLabel HeLa-S3: (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 52\ shortLabel ENCFF757GHL_ENCFF432PYK_ENCFF658XKZ_ENCFF179RSE\ subGroups organ=uterus view=cCREs_view simpleBiosample=HeLa-S3 biosampleType=cell_line donor=ENCDO000AAB dataType=typeCcres\ track ENCFF757GHL_ENCFF432PYK_ENCFF658XKZ_ENCFF179RSE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF586UTL ENCSR000BHP Signal bigWig HepG2 FOSL2 ENCSR000BHP signal 2 167 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/1c87cf8e-7837-427e-8810-1913c83c9168/ENCFF586UTL.bigWig\ color 137,152,82\ longLabel HepG2 FOSL2 ENCSR000BHP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHP Signal\ track wgEncodeReg4TfChip_ENCFF586UTL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF434HEC ENCSR000DQI Peak bigBed 5 BJ CTCF peak 4 167 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/48c3c43f-d37b-469b-82ee-8d53a9867828/ENCFF434HEC.bigBed\ color 0,176,240\ labelFields none\ longLabel BJ CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQI Peak\ track wgEncodeReg4Epigenetics_ENCFF434HEC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF369OGU ENCSR090RYJ + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 167 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/95cd2303-c34b-4d84-bbcf-be48e416ec89/ENCFF369OGU.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR090RYJ + strand\ track wgEncodeReg4RnaSeq_ENCFF369OGU\ type bigWig\ visibility full\ encTfChipPkENCFF687SSY GM12878 RBBP5 narrowPeak Transcription Factor ChIP-seq Peaks of RBBP5 in GM12878 from ENCODE 3 (ENCFF687SSY) 0 167 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RBBP5 in GM12878 from ENCODE 3 (ENCFF687SSY)\ parent encTfChipPk off\ shortLabel GM12878 RBBP5\ subGroups cellType=GM12878 factor=RBBP5\ track encTfChipPkENCFF687SSY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward 0 167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward 1 167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ chainHprcGCA_018504645v1 HG01109.pat chain GCA_018504645.1 HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 167 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018504645.1\ parent hprcChainNetViewchain off\ priority 58\ shortLabel HG01109.pat\ subGroups view=chain sample=s058 population=amr subpop=pur hap=pat\ track chainHprcGCA_018504645v1\ type chain GCA_018504645.1\ liverHepMerged Liver Hepatocytes Merged bigWig Methylation Atlas: Liver Hepatocytes Merged Samples 2 167 139 69 19 197 162 137 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverHepMerged.bw\ color 139,69,19\ longLabel Methylation Atlas: Liver Hepatocytes Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 167\ shortLabel Liver Hepatocytes Merged\ subGroups cellType=Liver-Hep dataType=Merged\ track liverHepMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwSknshraHotspot SK-N-SH_RA Ht bigBed 6 + SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Hotspots from ENCODE 0 167 85 189 255 170 222 255 1 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SK-N-SH_RA Ht\ subGroups view=b_Hot cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknshraHotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwCd20ro01778Hotspot CD20+_RO01778 Ht bigBed 6 + CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Hotspots from ENCODE 0 168 85 183 255 170 219 255 1 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel CD20+_RO01778 Ht\ subGroups view=b_Hot cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwCd20ro01778Hotspot\ type bigBed 6 +\ ENCFF609VNS_ENCFF370WIV_ENCFF154QOP_ENCFF700PHX ENCFF609VNS_ENCFF370WIV_ENCFF154QOP_ENCFF700PHX bigBed 9 + 5 Uterus, female adult (53 years): (1) cCREs 4 168 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF609VNS_ENCFF370WIV_ENCFF154QOP_ENCFF700PHX.bb\ longLabel Uterus, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 167\ shortLabel ENCFF609VNS_ENCFF370WIV_ENCFF154QOP_ENCFF700PHX\ subGroups organ=uterus view=cCREs_view simpleBiosample=uterus-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF609VNS_ENCFF370WIV_ENCFF154QOP_ENCFF700PHX\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF339WCT ENCSR000BHR Peak bigBed 5 HepG2 ZBTB33 peaks 4 168 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d7cb91a7-aa13-464e-aff6-4a9fe8361dea/ENCFF339WCT.bigBed\ labelFields none\ longLabel HepG2 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF339WCT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF573RGJ ENCSR000DQI Signal bigWig BJ CTCF signal 2 168 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/142feb28-9f2a-4488-9098-7f8a46edcdd2/ENCFF573RGJ.bigWig\ color 0,176,240\ longLabel BJ CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQI Signal\ track wgEncodeReg4Epigenetics_ENCFF573RGJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF666EAW ENCSR090RYJ - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 168 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/cf4c00b2-2b2e-4fbb-9ac5-9a543e3dbab1/ENCFF666EAW.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR090RYJ - strand\ track wgEncodeReg4RnaSeq_ENCFF666EAW\ type bigWig\ visibility full\ encTfChipPkENCFF470ZMK GM12878 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in GM12878 from ENCODE 3 (ENCFF470ZMK) 0 168 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in GM12878 from ENCODE 3 (ENCFF470ZMK)\ parent encTfChipPk off\ shortLabel GM12878 RCOR1\ subGroups cellType=GM12878 factor=RCOR1\ track encTfChipPkENCFF470ZMK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse 0 168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse 1 168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep1.CNhs13710.13338-143C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep1_CNhs13710_13338-143C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13338-143C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep1_CNhs13710_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13338-143C8\ urlLabel FANTOM5 Details:\ netHprcGCA_018504645v1 HG01109.pat netAlign GCA_018504645.1 chainHprcGCA_018504645v1 HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chain Nets 1 168 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG01109.pat HG01109.alt.pat.f1_v2 (May 2021 GCA_018504645.1_HG01109.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018504645.1\ parent hprcChainNetViewnet off\ priority 58\ shortLabel HG01109.pat\ subGroups view=net sample=s058 population=amr subpop=pur hap=pat\ track netHprcGCA_018504645v1\ type netAlign GCA_018504645.1 chainHprcGCA_018504645v1\ liverHep0R3 Liver - Hepatocytes - Z000000R3 bigWig Methylation Atlas: Liver - Hepatocytes - Z000000R3 2 168 139 69 19 197 162 137 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverHep0R3.bw\ color 139,69,19\ longLabel Methylation Atlas: Liver - Hepatocytes - Z000000R3\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 168\ shortLabel Liver - Hepatocytes - Z000000R3\ subGroups cellType=Liver-Hep dataType=Replicate\ track liverHep0R3\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF525EPU_ENCFF904YBG_ENCFF092VQF_ENCFF258LTU ENCFF525EPU_ENCFF904YBG_ENCFF092VQF_ENCFF258LTU bigBed 9 + 5 Vagina, female adult (51 years): (1) cCREs 4 169 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF525EPU_ENCFF904YBG_ENCFF092VQF_ENCFF258LTU.bb\ longLabel Vagina, female adult (51 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 168\ shortLabel ENCFF525EPU_ENCFF904YBG_ENCFF092VQF_ENCFF258LTU\ subGroups organ=vagina view=cCREs_view simpleBiosample=vagina-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCcres\ track ENCFF525EPU_ENCFF904YBG_ENCFF092VQF_ENCFF258LTU\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF650AIE ENCSR000BHR Signal bigWig HepG2 ZBTB33 ENCSR000BHR signal 2 169 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/3263ec82-d73b-410c-9176-22c0515a5f10/ENCFF650AIE.bigWig\ color 137,152,82\ longLabel HepG2 ZBTB33 ENCSR000BHR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHR Signal\ track wgEncodeReg4TfChip_ENCFF650AIE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF934QYS ENCSR000DQN Peak bigBed 5 Caco-2 CTCF peak 4 169 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/95f547ed-81a5-467d-ba2c-85779efd68f0/ENCFF934QYS.bigBed\ color 0,176,240\ labelFields none\ longLabel Caco-2 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQN Peak\ track wgEncodeReg4Epigenetics_ENCFF934QYS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF387UUZ ENCSR094GVZ + strand bigWig Sigmoid colon tissue female adult (53 years) + strand total RNA-seq signal 2 169 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6f54ea56-11f7-483f-b2b2-0cb63ac7dfe2/ENCFF387UUZ.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR094GVZ + strand\ track wgEncodeReg4RnaSeq_ENCFF387UUZ\ type bigWig\ visibility full\ encTfChipPkENCFF105YDI GM12878 RELB narrowPeak Transcription Factor ChIP-seq Peaks of RELB in GM12878 from ENCODE 3 (ENCFF105YDI) 0 169 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RELB in GM12878 from ENCODE 3 (ENCFF105YDI)\ parent encTfChipPk off\ shortLabel GM12878 RELB\ subGroups cellType=GM12878 factor=RELB\ track encTfChipPkENCFF105YDI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward 0 169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward 1 169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ chainHprcGCA_018506955v1 HG00733.pat chain GCA_018506955.1 HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 169 0 0 0 255 255 0 1 0 0 hprc 1 longLabel HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018506955.1\ parent hprcChainNetViewchain off\ priority 59\ shortLabel HG00733.pat\ subGroups view=chain sample=s059 population=amr subpop=pur hap=pat\ track chainHprcGCA_018506955v1\ type chain GCA_018506955.1\ liverHep0T3 Liver - Hepatocytes - Z000000T3 bigWig Methylation Atlas: Liver - Hepatocytes - Z000000T3 2 169 139 69 19 197 162 137 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverHep0T3.bw\ color 139,69,19\ longLabel Methylation Atlas: Liver - Hepatocytes - Z000000T3\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 169\ shortLabel Liver - Hepatocytes - Z000000T3\ subGroups cellType=Liver-Hep dataType=Replicate\ track liverHep0T3\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwTh1Hotspot Th1 Ht bigBed 6 + Th1 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE 0 169 85 178 255 170 216 255 1 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Th1 Ht\ subGroups view=b_Hot cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh1Hotspot\ type bigBed 6 +\ ENCFF547JQK_ENCFF379GSJ_ENCFF738HRV_ENCFF704JSE ENCFF547JQK_ENCFF379GSJ_ENCFF738HRV_ENCFF704JSE bigBed 9 + 5 Vagina, female adult (53 years): (1) cCREs 4 170 0 0 0 127 127 127 0 0 0 https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$ regulation 1 bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF547JQK_ENCFF379GSJ_ENCFF738HRV_ENCFF704JSE.bb\ longLabel Vagina, female adult (53 years): (1) cCREs\ mouseOver ID: ${name}
Class: ${cCRE_class}
DNase Z-score: ${DNase_Z_score}
H3K4me3 Z-score: ${H3K4me3_Z_score}
H3K27ac Z-score: ${H3K27ac_Z_score}
CTCF Z-score: ${CTCF_Z_score}\ parent cCREs_view off\ priority 169\ shortLabel ENCFF547JQK_ENCFF379GSJ_ENCFF738HRV_ENCFF704JSE\ subGroups organ=vagina view=cCREs_view simpleBiosample=vagina-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCcres\ track ENCFF547JQK_ENCFF379GSJ_ENCFF738HRV_ENCFF704JSE\ type bigBed 9 + 5\ url https://screen.wenglab.org/search?assembly=GRCh38&accessions=$$\ urlLabel cCRE details on SCREEN\ visibility squish\ wgEncodeReg4TfChip_ENCFF211VKG ENCSR000BHS Peak bigBed 5 HeLa-S3 GABPA peaks 4 170 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/83a0af21-4731-480c-a2f4-39b1e070cfdf/ENCFF211VKG.bigBed\ labelFields none\ longLabel HeLa-S3 GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF211VKG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF227NGR ENCSR000DQN Signal bigWig Caco-2 CTCF signal 2 170 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/64dec546-0560-4f7a-ae71-bb0a6176d16b/ENCFF227NGR.bigWig\ color 0,176,240\ longLabel Caco-2 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQN Signal\ track wgEncodeReg4Epigenetics_ENCFF227NGR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF779RGY ENCSR094GVZ - strand bigWig Sigmoid colon tissue female adult (53 years) - strand total RNA-seq signal 2 170 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/71e975be-e84b-4923-abd6-454e60696c82/ENCFF779RGY.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR094GVZ - strand\ track wgEncodeReg4RnaSeq_ENCFF779RGY\ type bigWig\ visibility full\ encTfChipPkENCFF313CII GM12878 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF313CII) 0 170 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in GM12878 from ENCODE 3 (ENCFF313CII)\ parent encTfChipPk off\ shortLabel GM12878 REST\ subGroups cellType=GM12878 factor=REST\ track encTfChipPkENCFF313CII\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse 0 170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse 1 170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep2.CNhs13723.13350-143E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep2_CNhs13723_13350-143E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13350-143E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep2_CNhs13723_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13350-143E2\ urlLabel FANTOM5 Details:\ netHprcGCA_018506955v1 HG00733.pat netAlign GCA_018506955.1 chainHprcGCA_018506955v1 HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chain Nets 1 170 0 0 0 255 255 0 0 0 0 hprc 0 longLabel HG00733.pat HG00733.alt.pat.f1_v2 (May 2021 GCA_018506955.1_HG00733.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018506955.1\ parent hprcChainNetViewnet off\ priority 59\ shortLabel HG00733.pat\ subGroups view=net sample=s059 population=amr subpop=pur hap=pat\ track netHprcGCA_018506955v1\ type netAlign GCA_018506955.1 chainHprcGCA_018506955v1\ liverHep431 Liver - Hepatocytes - Z00000431 bigWig Methylation Atlas: Liver - Hepatocytes - Z00000431 2 170 139 69 19 197 162 137 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverHep431.bw\ color 139,69,19\ longLabel Methylation Atlas: Liver - Hepatocytes - Z00000431\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 170\ shortLabel Liver - Hepatocytes - Z00000431\ subGroups cellType=Liver-Hep dataType=Replicate\ track liverHep431\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwTh2Hotspot Th2 Ht bigBed 6 + Th2 T-lymphocyte, helper type 2 DNaseI Hotspots from ENCODE 0 170 85 176 255 170 215 255 1 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Th2 Ht\ subGroups view=b_Hot cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh2Hotspot\ type bigBed 6 +\ ENCFF673UYG ENCFF673UYG bigWig Adrenal gland, female adult (51 years): (5) CTCF, ENCFF673UYG 2 171 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF673UYG.bw\ color 0,176,240\ longLabel Adrenal gland, female adult (51 years): (5) CTCF, ENCFF673UYG\ maxHeightPixels 30\ parent CTCF_view off\ priority 3.4\ shortLabel ENCFF673UYG\ subGroups organ=adrenal_gland view=CTCF_view simpleBiosample=adrenal_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF673UYG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF282IEP ENCSR000BHS Signal bigWig HeLa-S3 GABPA ENCSR000BHS signal 2 171 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/243715de-5680-4ea2-b131-a6dc2f1a2a26/ENCFF282IEP.bigWig\ color 186,111,165\ longLabel HeLa-S3 GABPA ENCSR000BHS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHS Signal\ track wgEncodeReg4TfChip_ENCFF282IEP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF488VFY ENCSR000DQR Peak bigBed 5 B cell female adult 27 years H3K4me3 peak 4 171 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/a08dd19b-7a3f-4471-9fc2-0d9c4fba8d8d/ENCFF488VFY.bigBed\ color 255,0,0\ longLabel B cell female adult 27 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQR Peak\ track wgEncodeReg4Epigenetics_ENCFF488VFY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF050ZLU ENCSR094RQC + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 171 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/2140f3f7-2ebf-41df-9ece-a1e0e0042589/ENCFF050ZLU.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR094RQC + strand\ track wgEncodeReg4RnaSeq_ENCFF050ZLU\ type bigWig\ visibility full\ encTfChipPkENCFF259LNG GM12878 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in GM12878 from ENCODE 3 (ENCFF259LNG) 0 171 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in GM12878 from ENCODE 3 (ENCFF259LNG)\ parent encTfChipPk on\ shortLabel GM12878 RFX5\ subGroups cellType=GM12878 factor=RFX5\ track encTfChipPkENCFF259LNG\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day11Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward 0 171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day11Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward 1 171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ liverHep43Q Liver - Hepatocytes - Z0000043Q bigWig Methylation Atlas: Liver - Hepatocytes - Z0000043Q 2 171 139 69 19 197 162 137 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverHep43Q.bw\ color 139,69,19\ longLabel Methylation Atlas: Liver - Hepatocytes - Z0000043Q\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 171\ shortLabel Liver - Hepatocytes - Z0000043Q\ subGroups cellType=Liver-Hep dataType=Replicate\ track liverHep43Q\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ chainHprcHs1 T2T-CHM13v2.0 chain hs1 T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chained Alignments 3 171 0 0 0 255 255 0 1 0 0 hprc 1 longLabel T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chained Alignments\ otherDb hs1\ parent hprcChainNetViewchain off\ priority 87\ shortLabel T2T-CHM13v2.0\ subGroups view=chain sample=s087 population=other subpop=t2t hap=pri\ track chainHprcHs1\ type chain hs1\ wgEncodeRegDnaseUwTh1wb54553204Hotspot Th1_Wb54553204 Ht bigBed 6 + Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE 0 171 85 173 255 170 214 255 1 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Th1_Wb54553204 Ht\ subGroups view=b_Hot cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwTh1wb54553204Hotspot\ type bigBed 6 +\ ENCFF035TJC ENCFF035TJC bigWig Adrenal gland, male adult (54 years): (5) CTCF, ENCFF035TJC 2 172 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF035TJC.bw\ color 0,176,240\ longLabel Adrenal gland, male adult (54 years): (5) CTCF, ENCFF035TJC\ maxHeightPixels 30\ parent CTCF_view off\ priority 6.4\ shortLabel ENCFF035TJC\ subGroups organ=adrenal_gland view=CTCF_view simpleBiosample=adrenal_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF035TJC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF556LCN ENCSR000BHT Peak bigBed 5 HeLa-S3 TAF1 peaks 4 172 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/acf7e8d7-5ee0-49fe-b5b0-5557961892a5/ENCFF556LCN.bigBed\ labelFields none\ longLabel HeLa-S3 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF556LCN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF350OLM ENCSR000DQR Signal bigWig B cell female adult 27 years H3K4me3 signal 2 172 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/db618c2f-f0e1-4d6e-897f-31572536e1ec/ENCFF350OLM.bigWig\ color 255,0,0\ longLabel B cell female adult 27 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQR Signal\ track wgEncodeReg4Epigenetics_ENCFF350OLM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF372ZNZ ENCSR094RQC - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 172 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/79ebb522-4ca4-4f6f-8fa7-445a2970d2d3/ENCFF372ZNZ.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR094RQC - strand\ track wgEncodeReg4RnaSeq_ENCFF372ZNZ\ type bigWig\ visibility full\ encTfChipPkENCFF677QUK GM12878 RUNX3 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX3 in GM12878 from ENCODE 3 (ENCFF677QUK) 0 172 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RUNX3 in GM12878 from ENCODE 3 (ENCFF677QUK)\ parent encTfChipPk off\ shortLabel GM12878 RUNX3\ subGroups cellType=GM12878 factor=RUNX3\ track encTfChipPkENCFF677QUK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_rev Hes3-gfpCardiomyocyticInduction_Day11Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse 0 172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_rev Hes3-gfpCardiomyocyticInduction_Day11Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse 1 172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day11%2c%20biol_rep3.CNhs13735.13362-143F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day11, biol_rep3_CNhs13735_13362-143F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13362-143F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day11Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay11BiolRep3_CNhs13735_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13362-143F5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwJurkatHotspot Jurkat Ht bigBed 6 + Jurkat T-lymphocyte acute leukemia cell line DNaseI Hotspots from ENCODE 0 172 85 165 255 170 210 255 1 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Jurkat Ht\ subGroups view=b_Hot cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwJurkatHotspot\ type bigBed 6 +\ liverHep44H Liver - Hepatocytes - Z0000044H bigWig Methylation Atlas: Liver - Hepatocytes - Z0000044H 2 172 139 69 19 197 162 137 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverHep44H.bw\ color 139,69,19\ longLabel Methylation Atlas: Liver - Hepatocytes - Z0000044H\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 172\ shortLabel Liver - Hepatocytes - Z0000044H\ subGroups cellType=Liver-Hep dataType=Replicate\ track liverHep44H\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ netHprcHs1 T2T-CHM13v2.0 netAlign hs1 chainHprcHs1 T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chain Nets 1 172 0 0 0 255 255 0 0 0 0 hprc 0 longLabel T2T-CHM13v2.0 T2T-CHM13v2.0 (Jan. 2022 GCF_009914755.1_T2T-CHM13v2.0) HPRC project computed Chain Nets\ otherDb hs1\ parent hprcChainNetViewnet off\ priority 87\ shortLabel T2T-CHM13v2.0\ subGroups view=net sample=s087 population=other subpop=t2t hap=pri\ track netHprcHs1\ type netAlign hs1 chainHprcHs1\ ENCFF796PZW ENCFF796PZW bigWig Adrenal gland, female adult (41 years): (5) CTCF, ENCFF796PZW 2 173 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF796PZW.bw\ color 0,176,240\ longLabel Adrenal gland, female adult (41 years): (5) CTCF, ENCFF796PZW\ maxHeightPixels 30\ parent CTCF_view off\ priority 2.4\ shortLabel ENCFF796PZW\ subGroups organ=adrenal_gland view=CTCF_view simpleBiosample=adrenal_gland-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCtcf\ track ENCFF796PZW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF908IXJ ENCSR000BHT Signal bigWig HeLa-S3 TAF1 ENCSR000BHT signal 2 173 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/d3bd7dec-27a9-4306-9919-ca9bbb6de298/ENCFF908IXJ.bigWig\ color 186,111,165\ longLabel HeLa-S3 TAF1 ENCSR000BHT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHT Signal\ track wgEncodeReg4TfChip_ENCFF908IXJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF121AXM ENCSR000DQV Peak bigBed 5 GM06990 H3K4me3 peak 4 173 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/973de967-0818-47a9-a5d7-3963b08fb705/ENCFF121AXM.bigBed\ color 255,0,0\ longLabel GM06990 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQV Peak\ track wgEncodeReg4Epigenetics_ENCFF121AXM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF863UAA ENCSR094VRQ + strand bigWig Breast epithelium tissue male adult (37 years) + strand total RNA-seq signal 2 173 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/47f5ff97-b1aa-4c50-b81e-77d188e5486c/ENCFF863UAA.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR094VRQ + strand\ track wgEncodeReg4RnaSeq_ENCFF863UAA\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm12878Hotspot GM12878 Ht bigBed 6 + GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE 0 173 85 152 255 170 203 255 1 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel GM12878 Ht\ subGroups view=b_Hot cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwGm12878Hotspot\ type bigBed 6 +\ encTfChipPkENCFF313BDA GM12878 RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in GM12878 from ENCODE 3 (ENCFF313BDA) 0 173 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of RXRA in GM12878 from ENCODE 3 (ENCFF313BDA)\ parent encTfChipPk off\ shortLabel GM12878 RXRA\ subGroups cellType=GM12878 factor=RXRA\ track encTfChipPkENCFF313BDA\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward 0 173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward 1 173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ liverHep44M Liver - Hepatocytes - Z0000044M bigWig Methylation Atlas: Liver - Hepatocytes - Z0000044M 2 173 139 69 19 197 162 137 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/liverHep44M.bw\ color 139,69,19\ longLabel Methylation Atlas: Liver - Hepatocytes - Z0000044M\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 173\ shortLabel Liver - Hepatocytes - Z0000044M\ subGroups cellType=Liver-Hep dataType=Replicate\ track liverHep44M\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ chainHprcGCA_018503255v1 NA18906.mat chain GCA_018503255.1 NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chained Alignments 3 173 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503255.1\ parent hprcChainNetViewchain off\ priority 39\ shortLabel NA18906.mat\ subGroups view=chain sample=s039 population=afr subpop=yri hap=mat\ track chainHprcGCA_018503255v1\ type chain GCA_018503255.1\ ENCFF419QIY ENCFF419QIY bigWig Adrenal gland, female adult (53 years): (5) CTCF, ENCFF419QIY 2 174 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF419QIY.bw\ color 0,176,240\ longLabel Adrenal gland, female adult (53 years): (5) CTCF, ENCFF419QIY\ maxHeightPixels 30\ parent CTCF_view off\ priority 4.4\ shortLabel ENCFF419QIY\ subGroups organ=adrenal_gland view=CTCF_view simpleBiosample=adrenal_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF419QIY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF204YVO ENCSR000BHU Peak bigBed 5 HepG2 RXRA peaks 4 174 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/a9eb1a6f-1acb-4827-a62a-da8034878ddc/ENCFF204YVO.bigBed\ labelFields none\ longLabel HepG2 RXRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF204YVO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF578UKA ENCSR000DQV Signal bigWig GM06990 H3K4me3 signal 2 174 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/a69dccda-c0a0-4935-8bfc-8649ef6cd1e7/ENCFF578UKA.bigWig\ color 255,0,0\ longLabel GM06990 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQV Signal\ track wgEncodeReg4Epigenetics_ENCFF578UKA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF495ROB ENCSR094VRQ - strand bigWig Breast epithelium tissue male adult (37 years) - strand total RNA-seq signal 2 174 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/a7c30824-31a1-46cc-9c7f-9c86bfd9ca32/ENCFF495ROB.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR094VRQ - strand\ track wgEncodeReg4RnaSeq_ENCFF495ROB\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm12865Hotspot GM12865 Ht bigBed 6 + GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE 0 174 85 147 255 170 201 255 1 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel GM12865 Ht\ subGroups view=b_Hot cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm12865Hotspot\ type bigBed 6 +\ encTfChipPkENCFF050CYK GM12878 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in GM12878 from ENCODE 3 (ENCFF050CYK) 0 174 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in GM12878 from ENCODE 3 (ENCFF050CYK)\ parent encTfChipPk off\ shortLabel GM12878 SIN3A\ subGroups cellType=GM12878 factor=SIN3A\ track encTfChipPkENCFF050CYK\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse 0 174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse 1 174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep1.CNhs13711.13339-143C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep1_CNhs13711_13339-143C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13339-143C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep1_CNhs13711_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13339-143C9\ urlLabel FANTOM5 Details:\ kidneyEpMerged Kidney Epithelium Merged bigWig Methylation Atlas: Kidney Epithelium Merged Samples 2 174 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyEpMerged.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 174\ shortLabel Kidney Epithelium Merged\ subGroups cellType=Kidney-Ep dataType=Merged\ track kidneyEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ netHprcGCA_018503255v1 NA18906.mat netAlign GCA_018503255.1 chainHprcGCA_018503255v1 NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chain Nets 1 174 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA18906.mat NA18906.pri.mat.f1_v2 (May 2021 GCA_018503255.1_NA18906.pri.mat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503255.1\ parent hprcChainNetViewnet off\ priority 39\ shortLabel NA18906.mat\ subGroups view=net sample=s039 population=afr subpop=yri hap=mat\ track netHprcGCA_018503255v1\ type netAlign GCA_018503255.1 chainHprcGCA_018503255v1\ ENCFF804PBU ENCFF804PBU bigWig Adrenal gland, male adult (37 years): (5) CTCF, ENCFF804PBU 2 175 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF804PBU.bw\ color 0,176,240\ longLabel Adrenal gland, male adult (37 years): (5) CTCF, ENCFF804PBU\ maxHeightPixels 30\ parent CTCF_view off\ priority 5.4\ shortLabel ENCFF804PBU\ subGroups organ=adrenal_gland view=CTCF_view simpleBiosample=adrenal_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF804PBU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF669HQT ENCSR000BHU Signal bigWig HepG2 RXRA ENCSR000BHU signal 2 175 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/d7c8b7e6-d0f4-4160-95ba-fa9203acaf87/ENCFF669HQT.bigWig\ color 137,152,82\ longLabel HepG2 RXRA ENCSR000BHU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHU Signal\ track wgEncodeReg4TfChip_ENCFF669HQT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF471OQT ENCSR000DQW Peak bigBed 5 GM06990 CTCF peak 4 175 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/79244903-7867-455b-8c3c-4fc83eafdfd2/ENCFF471OQT.bigBed\ color 0,176,240\ labelFields none\ longLabel GM06990 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQW Peak\ track wgEncodeReg4Epigenetics_ENCFF471OQT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF942QIE ENCSR096LTX + strand bigWig Spleen tissue female adult (61 years) + strand total RNA-seq signal 2 175 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/60e082ba-e0ed-475c-89b1-638c9e612db2/ENCFF942QIE.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR096LTX + strand\ track wgEncodeReg4RnaSeq_ENCFF942QIE\ type bigWig\ visibility full\ encTfChipPkENCFF864TFH GM12878 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in GM12878 from ENCODE 3 (ENCFF864TFH) 0 175 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in GM12878 from ENCODE 3 (ENCFF864TFH)\ parent encTfChipPk off\ shortLabel GM12878 SIX5\ subGroups cellType=GM12878 factor=SIX5\ track encTfChipPkENCFF864TFH\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward 0 175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br2+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward 1 175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ kidneyGlomEp45K Kidney Glomerular - Epithelial - Z0000045K bigWig Methylation Atlas: Kidney Glomerular - Epithelial - Z0000045K 2 175 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomEp45K.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Glomerular - Epithelial - Z0000045K\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 175\ shortLabel Kidney Glomerular - Epithelial - Z0000045K\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyGlomEp45K\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwMonocytescd14ro01746Hotspot Monocyte-CD14+ Ht bigBed 6 + Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Hotspots from ENCODE 0 175 85 135 255 170 195 255 1 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel Monocyte-CD14+ Ht\ subGroups view=b_Hot cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Hotspot\ type bigBed 6 +\ chainHprcGCA_018503285v1 NA18906.pat chain GCA_018503285.1 NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chained Alignments 3 175 0 0 0 255 255 0 1 0 0 hprc 1 longLabel NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chained Alignments\ otherDb GCA_018503285.1\ parent hprcChainNetViewchain off\ priority 40\ shortLabel NA18906.pat\ subGroups view=chain sample=s040 population=afr subpop=yri hap=pat\ track chainHprcGCA_018503285v1\ type chain GCA_018503285.1\ ENCFF736UDR ENCFF736UDR bigWig K562: (5) CTCF, ENCFF736UDR 2 176 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF736UDR.bw\ color 0,176,240\ longLabel K562: (5) CTCF, ENCFF736UDR\ maxHeightPixels 30\ parent CTCF_view off\ priority 58.4\ shortLabel ENCFF736UDR\ subGroups organ=blood view=CTCF_view simpleBiosample=K562 biosampleType=cell_line donor=ENCDO000AAD dataType=typeCtcf\ track ENCFF736UDR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF245LYF ENCSR000BHZ Peak bigBed 5 GM12892 POLR2A peaks 4 176 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/af370030-993d-437b-8212-2e17db88798b/ENCFF245LYF.bigBed\ labelFields none\ longLabel GM12892 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF245LYF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF564FON ENCSR000DQW Signal bigWig GM06990 CTCF signal 2 176 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/35d5f78c-5ef5-4ce2-b211-9493b367073a/ENCFF564FON.bigWig\ color 0,176,240\ longLabel GM06990 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQW Signal\ track wgEncodeReg4Epigenetics_ENCFF564FON\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF370NHN ENCSR096LTX - strand bigWig Spleen tissue female adult (61 years) - strand total RNA-seq signal 2 176 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/182bfde9-0554-4db0-a524-95cc1785affe/ENCFF370NHN.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR096LTX - strand\ track wgEncodeReg4RnaSeq_ENCFF370NHN\ type bigWig\ visibility full\ encTfChipPkENCFF903KEI GM12878 SKIL narrowPeak Transcription Factor ChIP-seq Peaks of SKIL in GM12878 from ENCODE 3 (ENCFF903KEI) 0 176 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SKIL in GM12878 from ENCODE 3 (ENCFF903KEI)\ parent encTfChipPk off\ shortLabel GM12878 SKIL\ subGroups cellType=GM12878 factor=SKIL\ track encTfChipPkENCFF903KEI\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse 0 176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br2- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse 1 176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep2.CNhs13724.13351-143E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep2_CNhs13724_13351-143E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13351-143E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep2_CNhs13724_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13351-143E3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHl60Hotspot HL-60 Ht bigBed 6 + HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE 0 176 85 124 255 170 189 255 1 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HL-60 Ht\ subGroups view=b_Hot cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwHl60Hotspot\ type bigBed 6 +\ kidneyGlomEp45L Kidney Glomerular - Epithelial - Z0000045L bigWig Methylation Atlas: Kidney Glomerular - Epithelial - Z0000045L 2 176 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomEp45L.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Glomerular - Epithelial - Z0000045L\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 176\ shortLabel Kidney Glomerular - Epithelial - Z0000045L\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyGlomEp45L\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ netHprcGCA_018503285v1 NA18906.pat netAlign GCA_018503285.1 chainHprcGCA_018503285v1 NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chain Nets 1 176 0 0 0 255 255 0 0 0 0 hprc 0 longLabel NA18906.pat NA18906.alt.pat.f1_v2 (May 2021 GCA_018503285.1_NA18906.alt.pat.f1_v2) HPRC project computed Chain Nets\ otherDb GCA_018503285.1\ parent hprcChainNetViewnet off\ priority 40\ shortLabel NA18906.pat\ subGroups view=net sample=s040 population=afr subpop=yri hap=pat\ track netHprcGCA_018503285v1\ type netAlign GCA_018503285.1 chainHprcGCA_018503285v1\ ENCFF644EEX ENCFF644EEX bigWig GM12878: (5) CTCF, ENCFF644EEX 2 177 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF644EEX.bw\ color 0,176,240\ longLabel GM12878: (5) CTCF, ENCFF644EEX\ maxHeightPixels 30\ parent CTCF_view off\ priority 34.4\ shortLabel ENCFF644EEX\ subGroups organ=blood view=CTCF_view simpleBiosample=GM12878 biosampleType=cell_line donor=ENCDO000AAK dataType=typeCtcf\ track ENCFF644EEX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF597COP ENCSR000BHZ Signal bigWig GM12892 POLR2A ENCSR000BHZ signal 2 177 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/eeb1a4c9-65bd-41c0-a5d3-d2d6c284e755/ENCFF597COP.bigWig\ color 254,75,173\ longLabel GM12892 POLR2A ENCSR000BHZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BHZ Signal\ track wgEncodeReg4TfChip_ENCFF597COP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF258NJQ ENCSR000DQY Peak bigBed 5 GM12801 CTCF peak 4 177 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/01/f79df941-140e-4c43-ab1c-e4fd7a0efcd6/ENCFF258NJQ.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12801 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQY Peak\ track wgEncodeReg4Epigenetics_ENCFF258NJQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF033RAM ENCSR096UGR + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 177 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/948ea19b-6ff1-4a37-a4d4-ec997cebcc2d/ENCFF033RAM.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR096UGR + strand\ track wgEncodeReg4RnaSeq_ENCFF033RAM\ type bigWig\ visibility full\ encTfChipPkENCFF987PGY GM12878 SMAD1 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD1 in GM12878 from ENCODE 3 (ENCFF987PGY) 0 177 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMAD1 in GM12878 from ENCODE 3 (ENCFF987PGY)\ parent encTfChipPk off\ shortLabel GM12878 SMAD1\ subGroups cellType=GM12878 factor=SMAD1\ track encTfChipPkENCFF987PGY\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day12Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward 0 177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day12Br3+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward 1 177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ kidneyGlomPodo42W Kidney Glomerular - Podocytes - Z0000042W bigWig Methylation Atlas: Kidney Glomerular - Podocytes - Z0000042W 2 177 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomPodo42W.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Glomerular - Podocytes - Z0000042W\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 177\ shortLabel Kidney Glomerular - Podocytes - Z0000042W\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyGlomPodo42W\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwNb4Hotspot NB4 Ht bigBed 6 + NB4 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE 0 177 85 112 255 170 183 255 1 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel NB4 Ht\ subGroups view=b_Hot cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwNb4Hotspot\ type bigBed 6 +\ ENCFF244CXJ ENCFF244CXJ bigWig HL-60: (5) CTCF, ENCFF244CXJ 2 178 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF244CXJ.bw\ color 0,176,240\ longLabel HL-60: (5) CTCF, ENCFF244CXJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 56.4\ shortLabel ENCFF244CXJ\ subGroups organ=blood view=CTCF_view simpleBiosample=HL-60 biosampleType=cell_line donor=ENCDO000AAM dataType=typeCtcf\ track ENCFF244CXJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF542ZFO ENCSR000BIA Peak bigBed 5 GM12892 POLR2AphosphoS5 peaks 4 178 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/c3df04c3-1557-44cb-bc9c-cc5f1696212c/ENCFF542ZFO.bigBed\ labelFields none\ longLabel GM12892 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF542ZFO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF172GQZ ENCSR000DQY Signal bigWig GM12801 CTCF signal 2 178 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/01/55159994-348e-4f25-9cb1-e3ee03e4116a/ENCFF172GQZ.bigWig\ color 0,176,240\ longLabel GM12801 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQY Signal\ track wgEncodeReg4Epigenetics_ENCFF172GQZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF739HWP ENCSR096UGR - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 178 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/8e674af6-a3a1-447f-ad1c-63b6e489838c/ENCFF739HWP.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR096UGR - strand\ track wgEncodeReg4RnaSeq_ENCFF739HWP\ type bigWig\ visibility full\ encTfChipPkENCFF855SJG GM12878 SMAD5 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD5 in GM12878 from ENCODE 3 (ENCFF855SJG) 0 178 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMAD5 in GM12878 from ENCODE 3 (ENCFF855SJG)\ parent encTfChipPk off\ shortLabel GM12878 SMAD5\ subGroups cellType=GM12878 factor=SMAD5\ track encTfChipPkENCFF855SJG\ wgEncodeRegDnaseUwH7hescHotspot H7-ES Ht bigBed 6 + H7-hESC embryonic stem cell DNaseI Hotspots from ENCODE 0 178 85 93 255 170 174 255 1 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel H7-ES Ht\ subGroups view=b_Hot cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescHotspot\ type bigBed 6 +\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_rev Hes3-gfpCardiomyocyticInduction_Day12Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse 0 178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_rev Hes3-gfpCardiomyocyticInduction_Day12Br3- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse 1 178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day12%2c%20biol_rep3.CNhs13736.13363-143F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day12, biol_rep3_CNhs13736_13363-143F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13363-143F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=ES_to_cardiomyocyte strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay12BiolRep3_CNhs13736_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13363-143F6\ urlLabel FANTOM5 Details:\ kidneyGlomPodo441 Kidney Glomerular - Podocytes - Z00000441 bigWig Methylation Atlas: Kidney Glomerular - Podocytes - Z00000441 2 178 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomPodo441.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Glomerular - Podocytes - Z00000441\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 178\ shortLabel Kidney Glomerular - Podocytes - Z00000441\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyGlomPodo441\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF398MEO ENCFF398MEO bigWig DND-41: (5) CTCF, ENCFF398MEO 2 179 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF398MEO.bw\ color 0,176,240\ longLabel DND-41: (5) CTCF, ENCFF398MEO\ maxHeightPixels 30\ parent CTCF_view off\ priority 24.4\ shortLabel ENCFF398MEO\ subGroups organ=blood view=CTCF_view simpleBiosample=DND-41 biosampleType=cell_line donor=ENCDO183AAA dataType=typeCtcf\ track ENCFF398MEO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF426NSN ENCSR000BIA Signal bigWig GM12892 POLR2AphosphoS5 ENCSR000BIA signal 2 179 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/ddb9ffb1-781f-4379-8854-0028f8ce6a68/ENCFF426NSN.bigWig\ color 254,75,173\ longLabel GM12892 POLR2AphosphoS5 ENCSR000BIA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIA Signal\ track wgEncodeReg4TfChip_ENCFF426NSN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF178DVZ ENCSR000DQZ Peak bigBed 5 GM12864 H3K4me3 peak 4 179 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/fcfc722d-cb22-465a-96f6-d50c944f80fe/ENCFF178DVZ.bigBed\ color 255,0,0\ longLabel GM12864 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQZ Peak\ track wgEncodeReg4Epigenetics_ENCFF178DVZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF086PNQ ENCSR096YLM + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (84 years) + strand total RNA-seq signal 2 179 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/1470addc-a6cb-4f5b-b67c-66f7c3ab8ea1/ENCFF086PNQ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (84 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR096YLM + strand\ track wgEncodeReg4RnaSeq_ENCFF086PNQ\ type bigWig\ visibility full\ encTfChipPkENCFF052STI GM12878 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in GM12878 from ENCODE 3 (ENCFF052STI) 0 179 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in GM12878 from ENCODE 3 (ENCFF052STI)\ parent encTfChipPk off\ shortLabel GM12878 SMARCA5\ subGroups cellType=GM12878 factor=SMARCA5\ track encTfChipPkENCFF052STI\ wgEncodeRegDnaseUwH7hescDiffprota5dHotspot H7-ES diff 5d Ht bigBed 6 + H7-hESC embryonic stem cell (diff 5d) DNaseI Hotspots from ENCODE 0 179 85 88 255 170 171 255 1 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel H7-ES diff 5d Ht\ subGroups view=b_Hot cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota5dHotspot\ type bigBed 6 +\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_fwd H9MelanocyticInduction_Day00Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward 0 179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_fwd H9MelanocyticInduction_Day00Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward 1 179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ kidneyGlomPodo442 Kidney Glomerular - Podocytes - Z00000442 bigWig Methylation Atlas: Kidney Glomerular - Podocytes - Z00000442 2 179 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyGlomPodo442.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Glomerular - Podocytes - Z00000442\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 179\ shortLabel Kidney Glomerular - Podocytes - Z00000442\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyGlomPodo442\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF975BGM ENCFF975BGM bigWig OCI-LY7: (5) CTCF, ENCFF975BGM 2 180 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF975BGM.bw\ color 0,176,240\ longLabel OCI-LY7: (5) CTCF, ENCFF975BGM\ maxHeightPixels 30\ parent CTCF_view off\ priority 118.4\ shortLabel ENCFF975BGM\ subGroups organ=blood view=CTCF_view simpleBiosample=OCI-LY7 biosampleType=cell_line donor=ENCDO351AAA dataType=typeCtcf\ track ENCFF975BGM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF440DJD ENCSR000BIB Peak bigBed 5 GM12892 TAF1 peaks 4 180 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/4ee093be-5b37-4dcb-8eea-e416107b4c53/ENCFF440DJD.bigBed\ labelFields none\ longLabel GM12892 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF440DJD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF012JLQ ENCSR000DQZ Signal bigWig GM12864 H3K4me3 signal 2 180 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/1868c41c-98bf-45e6-9206-d3be81d4b0b9/ENCFF012JLQ.bigWig\ color 255,0,0\ longLabel GM12864 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DQZ Signal\ track wgEncodeReg4Epigenetics_ENCFF012JLQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF586UIF ENCSR096YLM - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (84 years) - strand total RNA-seq signal 2 180 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/f60abc03-8a42-4c8f-886f-b139f2636902/ENCFF586UIF.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (84 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR096YLM - strand\ track wgEncodeReg4RnaSeq_ENCFF586UIF\ type bigWig\ visibility full\ encTfChipPkENCFF572RPI GM12878 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in GM12878 from ENCODE 3 (ENCFF572RPI) 0 180 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in GM12878 from ENCODE 3 (ENCFF572RPI)\ parent encTfChipPk off\ shortLabel GM12878 SMC3\ subGroups cellType=GM12878 factor=SMC3\ track encTfChipPkENCFF572RPI\ wgEncodeRegDnaseUwH7hescDiffprota14dHotspot H7-ES diff 14d Ht bigBed 6 + H7-hESC embryonic stem cell (diff 14d) DNaseI Hotspots from ENCODE 0 180 89 85 255 172 170 255 1 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel H7-ES diff 14d Ht\ subGroups view=b_Hot cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota14dHotspot\ type bigBed 6 +\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_rev H9MelanocyticInduction_Day00Br1- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse 0 180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_rev H9MelanocyticInduction_Day00Br1- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse 1 180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep1%20%28H9EB-1%20d0%29.CNhs12822.12627-134E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep1 (H9EB-1 d0)_CNhs12822_12627-134E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12627-134E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep1H9EB1D0_CNhs12822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12627-134E8\ urlLabel FANTOM5 Details:\ kidneyTubEp0QH Kidney Tubular - Epithelial - Z000000QH bigWig Methylation Atlas: Kidney Tubular - Epithelial - Z000000QH 2 180 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyTubEp0QH.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Tubular - Epithelial - Z000000QH\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 180\ shortLabel Kidney Tubular - Epithelial - Z000000QH\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyTubEp0QH\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF838OJW ENCFF838OJW bigWig MM.1S: (5) CTCF, ENCFF838OJW 2 181 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF838OJW.bw\ color 0,176,240\ longLabel MM.1S: (5) CTCF, ENCFF838OJW\ maxHeightPixels 30\ parent CTCF_view off\ priority 115.4\ shortLabel ENCFF838OJW\ subGroups organ=blood view=CTCF_view simpleBiosample=MM_1S biosampleType=cell_line donor=ENCDO697GBW dataType=typeCtcf\ track ENCFF838OJW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF076VFP ENCSR000BIB Signal bigWig GM12892 TAF1 ENCSR000BIB signal 2 181 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5f6828fe-3b60-484f-a843-6a56c80cffd8/ENCFF076VFP.bigWig\ color 254,75,173\ longLabel GM12892 TAF1 ENCSR000BIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIB Signal\ track wgEncodeReg4TfChip_ENCFF076VFP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF357DQE ENCSR000DRB Peak bigBed 5 GM12864 CTCF peak 4 181 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/9b775027-2a9d-42d9-ab5f-722d55d621b4/ENCFF357DQE.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12864 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRB Peak\ track wgEncodeReg4Epigenetics_ENCFF357DQE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF071TXL ENCSR098BUF + strand bigWig Esophagus muscularis mucosa tissue female adult (53 years) + strand total RNA-seq signal 2 181 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bd9df1d6-52a3-4bb8-9569-a1037d12807b/ENCFF071TXL.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR098BUF + strand\ track wgEncodeReg4RnaSeq_ENCFF071TXL\ type bigWig\ visibility full\ encTfChipPkENCFF766WWB GM12878 SRF 1 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF766WWB) 0 181 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF766WWB)\ parent encTfChipPk off\ shortLabel GM12878 SRF 1\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF766WWB\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_fwd H9MelanocyticInduction_Day00Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward 0 181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_fwd H9MelanocyticInduction_Day00Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward 1 181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ kidneyTubEp43Z Kidney Tubular - Epithelial - Z0000043Z bigWig Methylation Atlas: Kidney Tubular - Epithelial - Z0000043Z 2 181 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyTubEp43Z.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Tubular - Epithelial - Z0000043Z\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 181\ shortLabel Kidney Tubular - Epithelial - Z0000043Z\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyTubEp43Z\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwRptecHotspot RPTEC Ht bigBed 6 + RPTEC renal proximal tubule epithelium DNaseI Hotspots from ENCODE 0 181 100 85 255 177 170 255 1 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel RPTEC Ht\ subGroups view=b_Hot cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwRptecHotspot\ type bigBed 6 +\ ENCFF496PSJ ENCFF496PSJ bigWig CD14-positive monocyte, female: (5) CTCF, ENCFF496PSJ 2 182 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF496PSJ.bw\ color 0,176,240\ longLabel CD14-positive monocyte, female: (5) CTCF, ENCFF496PSJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 20.4\ shortLabel ENCFF496PSJ\ subGroups organ=blood view=CTCF_view simpleBiosample=CD14-positive_monocyte-_female biosampleType=primary_cell donor=ENCDO265AAA dataType=typeCtcf\ track ENCFF496PSJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF833NJP ENCSR000BIC Peak bigBed 5 H1 POLR2AphosphoS5 peaks 4 182 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6d388046-77b5-458a-ba5c-1ae9053ab250/ENCFF833NJP.bigBed\ labelFields none\ longLabel H1 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF833NJP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF070FTG ENCSR000DRB Signal bigWig GM12864 CTCF signal 2 182 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d78c325e-4373-4528-89d3-96718ea7ab26/ENCFF070FTG.bigWig\ color 0,176,240\ longLabel GM12864 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRB Signal\ track wgEncodeReg4Epigenetics_ENCFF070FTG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF660WUT ENCSR098BUF - strand bigWig Esophagus muscularis mucosa tissue female adult (53 years) - strand total RNA-seq signal 2 182 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/cff1d9b9-8338-4d67-909b-846a0a71c2e3/ENCFF660WUT.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR098BUF - strand\ track wgEncodeReg4RnaSeq_ENCFF660WUT\ type bigWig\ visibility full\ encTfChipPkENCFF829SEJ GM12878 SRF 2 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF829SEJ) 0 182 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF829SEJ)\ parent encTfChipPk off\ shortLabel GM12878 SRF 2\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF829SEJ\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_rev H9MelanocyticInduction_Day00Br2- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse 0 182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_rev H9MelanocyticInduction_Day00Br2- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse 1 182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep2%20%28H9EB-2%20d0%29.CNhs12825.12725-135G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep2 (H9EB-2 d0)_CNhs12825_12725-135G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12725-135G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep2H9EB2D0_CNhs12825_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12725-135G7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHrpepicHotspot HRPEpiC Ht bigBed 6 + HRPEpiC retinal pigment epithelium DNaseI Hotspots from ENCODE 0 182 124 85 255 189 170 255 1 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HRPEpiC Ht\ subGroups view=b_Hot cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHrpepicHotspot\ type bigBed 6 +\ kidneyTubEp440 Kidney Tubular - Epithelial - Z00000440 bigWig Methylation Atlas: Kidney Tubular - Epithelial - Z00000440 2 182 255 140 105 255 197 180 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/kidneyTubEp440.bw\ color 255,140,105\ longLabel Methylation Atlas: Kidney Tubular - Epithelial - Z00000440\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 182\ shortLabel Kidney Tubular - Epithelial - Z00000440\ subGroups cellType=Kidney-Ep dataType=Replicate\ track kidneyTubEp440\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF176ELT ENCFF176ELT bigWig Brain microvascular endothelial cell: (5) CTCF, ENCFF176ELT 2 183 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF176ELT.bw\ color 0,176,240\ longLabel Brain microvascular endothelial cell: (5) CTCF, ENCFF176ELT\ maxHeightPixels 30\ parent CTCF_view off\ priority 16.4\ shortLabel ENCFF176ELT\ subGroups organ=blood_vessel view=CTCF_view simpleBiosample=brain_microvascular_endothelial_cell biosampleType=primary_cell donor=ENCDO227AAA dataType=typeCtcf\ track ENCFF176ELT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF093YDV ENCSR000BIC Signal bigWig H1 POLR2AphosphoS5 ENCSR000BIC signal 2 183 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/34e4b03d-88f9-48e5-b354-8e29e8fb4619/ENCFF093YDV.bigWig\ color 118,158,101\ longLabel H1 POLR2AphosphoS5 ENCSR000BIC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIC Signal\ track wgEncodeReg4TfChip_ENCFF093YDV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF379ONN ENCSR000DRC Peak bigBed 5 GM12865 H3K4me3 peak 4 183 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/e3c3bf61-ebbf-4419-8d0e-42800f0590fd/ENCFF379ONN.bigBed\ color 255,0,0\ longLabel GM12865 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRC Peak\ track wgEncodeReg4Epigenetics_ENCFF379ONN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF007YKS ENCSR102NWB + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal 2 183 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/ec8caedf-6475-41d2-a142-348ca4cfd3e2/ENCFF007YKS.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR102NWB + strand\ track wgEncodeReg4RnaSeq_ENCFF007YKS\ type bigWig\ visibility full\ gastricEpMerged Gastric Epithelium Merged bigWig Methylation Atlas: Gastric Epithelium Merged Samples 2 183 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastricEpMerged.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 183\ shortLabel Gastric Epithelium Merged\ subGroups cellType=Gastric-Ep dataType=Merged\ track gastricEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF182IFE GM12878 SRF 3 narrowPeak Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF182IFE) 0 183 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SRF in GM12878 from ENCODE 3 (ENCFF182IFE)\ parent encTfChipPk off\ shortLabel GM12878 SRF 3\ subGroups cellType=GM12878 factor=SRF\ track encTfChipPkENCFF182IFE\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_fwd H9MelanocyticInduction_Day00Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward 0 183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_fwd H9MelanocyticInduction_Day00Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward 1 183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdlyadHotspot HMVEC-dLy-Ad Ht bigBed 6 + HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Hotspots from ENCODE 0 183 133 85 255 194 170 255 1 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel HMVEC-dLy-Ad Ht\ subGroups view=b_Hot cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyadHotspot\ type bigBed 6 +\ ENCFF880CZK ENCFF880CZK bigWig Ascending aorta, female adult (51 years): (5) CTCF, ENCFF880CZK 2 184 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF880CZK.bw\ color 0,176,240\ longLabel Ascending aorta, female adult (51 years): (5) CTCF, ENCFF880CZK\ maxHeightPixels 30\ parent CTCF_view off\ priority 8.4\ shortLabel ENCFF880CZK\ subGroups organ=blood_vessel view=CTCF_view simpleBiosample=ascending_aorta-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF880CZK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF272ULI ENCSR000BID Peak bigBed 5 HepG2 BHLHE40 peaks 4 184 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/bacad60a-adc6-43ed-b8ae-df86318cec8d/ENCFF272ULI.bigBed\ labelFields none\ longLabel HepG2 BHLHE40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BID Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF272ULI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF835KIQ ENCSR000DRC Signal bigWig GM12865 H3K4me3 signal 2 184 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/e9b2e1d6-91f9-4a86-8d4d-776490cf9090/ENCFF835KIQ.bigWig\ color 255,0,0\ longLabel GM12865 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRC Signal\ track wgEncodeReg4Epigenetics_ENCFF835KIQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF482XRR ENCSR102NWB - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal 2 184 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/459a461f-3f90-4ddc-a4ee-488b658610fa/ENCFF482XRR.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR102NWB - strand\ track wgEncodeReg4RnaSeq_ENCFF482XRR\ type bigWig\ visibility full\ gastAntEndo437 Gastric antrum - Endocrine - Z00000437 bigWig Methylation Atlas: Gastric antrum - Endocrine - Z00000437 2 184 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastAntEndo437.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric antrum - Endocrine - Z00000437\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 184\ shortLabel Gastric antrum - Endocrine - Z00000437\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastAntEndo437\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF323QQU GM12878 STAT1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in GM12878 from ENCODE 3 (ENCFF323QQU) 0 184 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in GM12878 from ENCODE 3 (ENCFF323QQU)\ parent encTfChipPk on\ shortLabel GM12878 STAT1\ subGroups cellType=GM12878 factor=STAT1\ track encTfChipPkENCFF323QQU\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_rev H9MelanocyticInduction_Day00Br3- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse 0 184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_rev H9MelanocyticInduction_Day00Br3- bigWig H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse 1 184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day00%2c%20biol_rep3%20%28H9EB-3%20d0%29.CNhs12908.12823-136I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day00, biol_rep3 (H9EB-3 d0)_CNhs12908_12823-136I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12823-136I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day00Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay00BiolRep3H9EB3D0_CNhs12908_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12823-136I6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHelas3Hotspot HeLa-S3 Ht bigBed 6 + HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 184 157 85 255 206 170 255 1 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot on\ shortLabel HeLa-S3 Ht\ subGroups view=b_Hot cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ track wgEncodeRegDnaseUwHelas3Hotspot\ type bigBed 6 +\ ENCFF341RAH ENCFF341RAH bigWig Coronary artery, female adult (53 years): (5) CTCF, ENCFF341RAH 2 185 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF341RAH.bw\ color 0,176,240\ longLabel Coronary artery, female adult (53 years): (5) CTCF, ENCFF341RAH\ maxHeightPixels 30\ parent CTCF_view off\ priority 23.4\ shortLabel ENCFF341RAH\ subGroups organ=blood_vessel view=CTCF_view simpleBiosample=coronary_artery-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF341RAH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF652YMX ENCSR000BID Signal bigWig HepG2 BHLHE40 ENCSR000BID signal 2 185 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/c124cb06-df28-4953-9532-93051bd15149/ENCFF652YMX.bigWig\ color 137,152,82\ longLabel HepG2 BHLHE40 ENCSR000BID signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BID Signal\ track wgEncodeReg4TfChip_ENCFF652YMX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF067GFI ENCSR000DRE Peak bigBed 5 GM12865 CTCF peak 4 185 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/e6e30554-ac27-4113-a02d-cd56c8b97503/ENCFF067GFI.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12865 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRE Peak\ track wgEncodeReg4Epigenetics_ENCFF067GFI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF507FAA ENCSR106SZN + strand bigWig Spleen tissue male adult (54 years) + strand total RNA-seq signal 2 185 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/4058d314-15e5-4a71-ad96-f2d8651fbe6d/ENCFF507FAA.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR106SZN + strand\ track wgEncodeReg4RnaSeq_ENCFF507FAA\ type bigWig\ visibility full\ gastAntEndo438 Gastric antrum - Endocrine - Z00000438 bigWig Methylation Atlas: Gastric antrum - Endocrine - Z00000438 2 185 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastAntEndo438.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric antrum - Endocrine - Z00000438\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 185\ shortLabel Gastric antrum - Endocrine - Z00000438\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastAntEndo438\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF923CHO GM12878 STAT3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in GM12878 from ENCODE 3 (ENCFF923CHO) 0 185 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of STAT3 in GM12878 from ENCODE 3 (ENCFF923CHO)\ parent encTfChipPk off\ shortLabel GM12878 STAT3\ subGroups cellType=GM12878 factor=STAT3\ track encTfChipPkENCFF923CHO\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_fwd H9MelanocyticInduction_Day01Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward 0 185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_fwd H9MelanocyticInduction_Day01Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward 1 185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwSknmcHotspot SK-N-MC Ht bigBed 6 + SK-N-MC neuroepithelioma cell line DNaseI Hotspots from ENCODE 0 185 176 85 255 215 170 255 1 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel SK-N-MC Ht\ subGroups view=b_Hot cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknmcHotspot\ type bigBed 6 +\ ENCFF857NIC ENCFF857NIC bigWig Ascending aorta, female adult (53 years): (5) CTCF, ENCFF857NIC 2 186 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF857NIC.bw\ color 0,176,240\ longLabel Ascending aorta, female adult (53 years): (5) CTCF, ENCFF857NIC\ maxHeightPixels 30\ parent CTCF_view off\ priority 9.4\ shortLabel ENCFF857NIC\ subGroups organ=blood_vessel view=CTCF_view simpleBiosample=ascending_aorta-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF857NIC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF915BIE ENCSR000BIE Peak bigBed 5 HepG2 CTCF peaks 4 186 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/11/d4223eda-ed35-456c-b4db-d32e312bf33c/ENCFF915BIE.bigBed\ labelFields none\ longLabel HepG2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF915BIE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF452NQO ENCSR000DRE Signal bigWig GM12865 CTCF signal 2 186 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/751644d7-fa61-408f-ad33-eb8c6d79d0d1/ENCFF452NQO.bigWig\ color 0,176,240\ longLabel GM12865 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRE Signal\ track wgEncodeReg4Epigenetics_ENCFF452NQO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF520WUA ENCSR106SZN - strand bigWig Spleen tissue male adult (54 years) - strand total RNA-seq signal 2 186 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f5c626b5-ab90-4fec-9c48-aee527e14e40/ENCFF520WUA.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR106SZN - strand\ track wgEncodeReg4RnaSeq_ENCFF520WUA\ type bigWig\ visibility full\ gastAntEp0SF Gastric antrum - Epithelial - Z000000SF bigWig Methylation Atlas: Gastric antrum - Epithelial - Z000000SF 2 186 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastAntEp0SF.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric antrum - Epithelial - Z000000SF\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 186\ shortLabel Gastric antrum - Epithelial - Z000000SF\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastAntEp0SF\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF383YEA GM12878 STAT5A narrowPeak Transcription Factor ChIP-seq Peaks of STAT5A in GM12878 from ENCODE 3 (ENCFF383YEA) 0 186 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of STAT5A in GM12878 from ENCODE 3 (ENCFF383YEA)\ parent encTfChipPk off\ shortLabel GM12878 STAT5A\ subGroups cellType=GM12878 factor=STAT5A\ track encTfChipPkENCFF383YEA\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_rev H9MelanocyticInduction_Day01Br1- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse 0 186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_rev H9MelanocyticInduction_Day01Br1- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse 1 186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep1%20%28H9EB-1%20d1%29.CNhs12823.12628-134E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep1 (H9EB-1 d1)_CNhs12823_12628-134E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12628-134E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep1H9EB1D1_CNhs12823_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12628-134E9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwMcf7Hotspot MCF-7 Ht bigBed 6 + MCF-7 mammary adenocarcinoma cell line DNaseI Hotspots from ENCODE 0 186 190 85 255 222 170 255 1 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel MCF-7 Ht\ subGroups view=b_Hot cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Hotspot\ type bigBed 6 +\ ENCFF429ZQN ENCFF429ZQN bigWig Thoracic aorta, male adult (37 years): (5) CTCF, ENCFF429ZQN 2 187 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF429ZQN.bw\ color 0,176,240\ longLabel Thoracic aorta, male adult (37 years): (5) CTCF, ENCFF429ZQN\ maxHeightPixels 30\ parent CTCF_view off\ priority 149.4\ shortLabel ENCFF429ZQN\ subGroups organ=blood_vessel view=CTCF_view simpleBiosample=thoracic_aorta-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF429ZQN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF029RTI ENCSR000BIE Signal bigWig HepG2 CTCF ENCSR000BIE signal 2 187 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d998764b-e8c4-4888-8dcd-1e563b866238/ENCFF029RTI.bigWig\ color 137,152,82\ longLabel HepG2 CTCF ENCSR000BIE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIE Signal\ track wgEncodeReg4TfChip_ENCFF029RTI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF697BYI ENCSR000DRN Peak bigBed 5 GM12872 CTCF peak 4 187 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/10100013-6441-4bae-b038-514e82adee40/ENCFF697BYI.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12872 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRN Peak\ track wgEncodeReg4Epigenetics_ENCFF697BYI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF136YVC ENCSR108MAU + strand bigWig Suprapubic skin tissue male adult (54 years) + strand total RNA-seq signal 2 187 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/a5a54fd8-9270-4352-8d79-a10fc04b603c/ENCFF136YVC.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR108MAU + strand\ track wgEncodeReg4RnaSeq_ENCFF136YVC\ type bigWig\ visibility full\ gastAntEp0SP Gastric antrum - Epithelial - Z000000SP bigWig Methylation Atlas: Gastric antrum - Epithelial - Z000000SP 2 187 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastAntEp0SP.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric antrum - Epithelial - Z000000SP\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 187\ shortLabel Gastric antrum - Epithelial - Z000000SP\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastAntEp0SP\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF069YVD GM12878 SUPT20H narrowPeak Transcription Factor ChIP-seq Peaks of SUPT20H in GM12878 from ENCODE 3 (ENCFF069YVD) 0 187 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SUPT20H in GM12878 from ENCODE 3 (ENCFF069YVD)\ parent encTfChipPk off\ shortLabel GM12878 SUPT20H\ subGroups cellType=GM12878 factor=SUPT20H\ track encTfChipPkENCFF069YVD\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_fwd H9MelanocyticInduction_Day01Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward 0 187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_fwd H9MelanocyticInduction_Day01Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward 1 187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrHotspot MCF-7 estr 0h Ht bigBed 6 + MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Hotspots from ENCODE 0 187 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel MCF-7 estr 0h Ht\ subGroups view=b_Hot cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrHotspot\ type bigBed 6 +\ ENCFF500RDL ENCFF500RDL bigWig Tibial artery, male adult (37 years): (5) CTCF, ENCFF500RDL 2 188 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF500RDL.bw\ color 0,176,240\ longLabel Tibial artery, male adult (37 years): (5) CTCF, ENCFF500RDL\ maxHeightPixels 30\ parent CTCF_view off\ priority 154.4\ shortLabel ENCFF500RDL\ subGroups organ=blood_vessel view=CTCF_view simpleBiosample=tibial_artery-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF500RDL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF412KAE ENCSR000BIF Peak bigBed 5 GM12878 POLR2AphosphoS5 peaks 4 188 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/07312a8e-0515-4194-b217-72868535f194/ENCFF412KAE.bigBed\ labelFields none\ longLabel GM12878 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF412KAE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF709YNV ENCSR000DRN Signal bigWig GM12872 CTCF signal 2 188 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/52884158-4f0b-47c3-b874-f1d242c16ac4/ENCFF709YNV.bigWig\ color 0,176,240\ longLabel GM12872 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRN Signal\ track wgEncodeReg4Epigenetics_ENCFF709YNV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF928QTX ENCSR108MAU - strand bigWig Suprapubic skin tissue male adult (54 years) - strand total RNA-seq signal 2 188 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f351312e-18c6-4e19-b53f-46232cc15ef1/ENCFF928QTX.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR108MAU - strand\ track wgEncodeReg4RnaSeq_ENCFF928QTX\ type bigWig\ visibility full\ gastAntEp0SR Gastric antrum - Epithelial - Z000000SR bigWig Methylation Atlas: Gastric antrum - Epithelial - Z000000SR 2 188 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastAntEp0SR.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric antrum - Epithelial - Z000000SR\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 188\ shortLabel Gastric antrum - Epithelial - Z000000SR\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastAntEp0SR\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF547FUI GM12878 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in GM12878 from ENCODE 3 (ENCFF547FUI) 0 188 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in GM12878 from ENCODE 3 (ENCFF547FUI)\ parent encTfChipPk off\ shortLabel GM12878 SUZ12\ subGroups cellType=GM12878 factor=SUZ12\ track encTfChipPkENCFF547FUI\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_rev H9MelanocyticInduction_Day01Br2- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse 0 188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_rev H9MelanocyticInduction_Day01Br2- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse 1 188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep2%20%28H9EB-2%20d1%29.CNhs12826.12726-135G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep2 (H9EB-2 d1)_CNhs12826_12726-135G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12726-135G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep2H9EB2D1_CNhs12826_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12726-135G8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrHotspot MCF-7 estr 1h Ht bigBed 6 + MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Hotspots from ENCODE 0 188 192 85 255 223 170 255 1 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel MCF-7 estr 1h Ht\ subGroups view=b_Hot cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrHotspot\ type bigBed 6 +\ ENCFF897TLT ENCFF897TLT bigWig Osteocyte, female embryo (5 days): (5) CTCF, ENCFF897TLT 2 189 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF897TLT.bw\ color 0,176,240\ longLabel Osteocyte, female embryo (5 days): (5) CTCF, ENCFF897TLT\ maxHeightPixels 30\ parent CTCF_view off\ priority 119.4\ shortLabel ENCFF897TLT\ subGroups organ=bone view=CTCF_view simpleBiosample=osteocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF897TLT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF559YIO ENCSR000BIF Signal bigWig GM12878 POLR2AphosphoS5 ENCSR000BIF signal 2 189 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/285210ea-7e36-4c18-8919-9eb11347035c/ENCFF559YIO.bigWig\ color 254,75,173\ longLabel GM12878 POLR2AphosphoS5 ENCSR000BIF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIF Signal\ track wgEncodeReg4TfChip_ENCFF559YIO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF711LOS ENCSR000DRP Peak bigBed 5 GM12873 CTCF peak 4 189 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/35602120-5169-44d3-a184-00c04de7a840/ENCFF711LOS.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12873 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRP Peak\ track wgEncodeReg4Epigenetics_ENCFF711LOS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF413ZPN ENCSR110BDY + strand bigWig Cardiac atrium fibroblast male child (2 years) + strand total RNA-seq signal 2 189 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/506e787f-52a5-4cc5-9643-a2d5477c7be2/ENCFF413ZPN.bigWig\ color 116,50,165\ longLabel Cardiac atrium fibroblast male child (2 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR110BDY + strand\ track wgEncodeReg4RnaSeq_ENCFF413ZPN\ type bigWig\ visibility full\ gastBodyEp0SD Gastric body - Epithelial - Z000000SD bigWig Methylation Atlas: Gastric body - Epithelial - Z000000SD 2 189 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastBodyEp0SD.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric body - Epithelial - Z000000SD\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 189\ shortLabel Gastric body - Epithelial - Z000000SD\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastBodyEp0SD\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF540AAP GM12878 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12878 from ENCODE 3 (ENCFF540AAP) 0 189 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12878 from ENCODE 3 (ENCFF540AAP)\ parent encTfChipPk on\ shortLabel GM12878 TAF1\ subGroups cellType=GM12878 factor=TAF1\ track encTfChipPkENCFF540AAP\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_fwd H9MelanocyticInduction_Day01Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward 0 189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_fwd H9MelanocyticInduction_Day01Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward 1 189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWerirb1Hotspot WERI-Rb-1 Ht bigBed 6 + WERI-Rb-1 retinoblastoma cell line DNaseI Hotspots from ENCODE 0 189 211 85 255 233 170 255 1 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel WERI-Rb-1 Ht\ subGroups view=b_Hot cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ track wgEncodeRegDnaseUwWerirb1Hotspot\ type bigBed 6 +\ wgEncodeRegDnaseUwBe2cHotspot BE2_C Ht bigBed 6 + BE2_C neuroblastoma cell line DNaseI Hotspots from ENCODE 0 190 237 85 255 246 170 255 1 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Hotspots from ENCODE\ parent wgEncodeRegDnaseHotspot off\ shortLabel BE2_C Ht\ subGroups view=b_Hot cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwBe2cHotspot\ type bigBed 6 +\ ENCFF327WOL ENCFF327WOL bigWig NCI-H929: (5) CTCF, ENCFF327WOL 2 190 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF327WOL.bw\ color 0,176,240\ longLabel NCI-H929: (5) CTCF, ENCFF327WOL\ maxHeightPixels 30\ parent CTCF_view off\ priority 116.4\ shortLabel ENCFF327WOL\ subGroups organ=bone_marrow view=CTCF_view simpleBiosample=NCI-H929 biosampleType=cell_line donor=ENCDO220OYR dataType=typeCtcf\ track ENCFF327WOL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF166YPP ENCSR000BII Peak bigBed 5 GM12891 POU2F2 peaks 4 190 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/deaebb24-e256-4457-ae79-afdc34c33167/ENCFF166YPP.bigBed\ labelFields none\ longLabel GM12891 POU2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BII Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF166YPP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF668LUY ENCSR000DRP Signal bigWig GM12873 CTCF signal 2 190 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/789bf5c3-0c8f-4e87-9888-6ce860a94344/ENCFF668LUY.bigWig\ color 0,176,240\ longLabel GM12873 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRP Signal\ track wgEncodeReg4Epigenetics_ENCFF668LUY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF020YUS ENCSR110BDY - strand bigWig Cardiac atrium fibroblast male child (2 years) - strand total RNA-seq signal 2 190 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/291a18fc-5a7c-47f8-95f3-54a02c1877c3/ENCFF020YUS.bigWig\ color 116,50,165\ longLabel Cardiac atrium fibroblast male child (2 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR110BDY - strand\ track wgEncodeReg4RnaSeq_ENCFF020YUS\ type bigWig\ visibility full\ gastBodyEp0SM Gastric body - Epithelial - Z000000SM bigWig Methylation Atlas: Gastric body - Epithelial - Z000000SM 2 190 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastBodyEp0SM.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric body - Epithelial - Z000000SM\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 190\ shortLabel Gastric body - Epithelial - Z000000SM\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastBodyEp0SM\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF392JWA GM12878 TBL1XR1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in GM12878 from ENCODE 3 (ENCFF392JWA) 0 190 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in GM12878 from ENCODE 3 (ENCFF392JWA)\ parent encTfChipPk off\ shortLabel GM12878 TBL1XR1\ subGroups cellType=GM12878 factor=TBL1XR1\ track encTfChipPkENCFF392JWA\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_rev H9MelanocyticInduction_Day01Br3- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse 0 190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_rev H9MelanocyticInduction_Day01Br3- bigWig H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse 1 190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day01%2c%20biol_rep3%20%28H9EB-3%20d1%29.CNhs12909.12824-136I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day01, biol_rep3 (H9EB-3 d1)_CNhs12909_12824-136I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12824-136I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay01BiolRep3H9EB3D1_CNhs12909_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12824-136I7\ urlLabel FANTOM5 Details:\ ENCFF850MLW ENCFF850MLW bigWig SK-N-SH: (5) CTCF, ENCFF850MLW 2 191 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF850MLW.bw\ color 0,176,240\ longLabel SK-N-SH: (5) CTCF, ENCFF850MLW\ maxHeightPixels 30\ parent CTCF_view off\ priority 138.4\ shortLabel ENCFF850MLW\ subGroups organ=brain view=CTCF_view simpleBiosample=SK-N-SH biosampleType=cell_line donor=ENCDO000ABD dataType=typeCtcf\ track ENCFF850MLW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF533NYL ENCSR000BII Signal bigWig GM12891 POU2F2 ENCSR000BII signal 2 191 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b237849f-b42a-42e5-b2b0-44c513ca92d0/ENCFF533NYL.bigWig\ color 254,75,173\ longLabel GM12891 POU2F2 ENCSR000BII signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BII Signal\ track wgEncodeReg4TfChip_ENCFF533NYL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF942MTD ENCSR000DRR Peak bigBed 5 GM12874 CTCF peak 4 191 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0823d1b8-1d9f-49d3-97d1-3a862eaabf27/ENCFF942MTD.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12874 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRR Peak\ track wgEncodeReg4Epigenetics_ENCFF942MTD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF122XJD ENCSR111PSY + strand bigWig Activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours + strand total RNA-seq signal 2 191 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/f6d0b779-17d2-4618-9214-4d2d75053537/ENCFF122XJD.bigWig\ color 254,75,173\ longLabel Activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR111PSY + strand\ track wgEncodeReg4RnaSeq_ENCFF122XJD\ type bigWig\ visibility full\ gastBodyEp0ST Gastric body - Epithelial - Z000000ST bigWig Methylation Atlas: Gastric body - Epithelial - Z000000ST 2 191 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastBodyEp0ST.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric body - Epithelial - Z000000ST\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 191\ shortLabel Gastric body - Epithelial - Z000000ST\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastBodyEp0ST\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF896UZB GM12878 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in GM12878 from ENCODE 3 (ENCFF896UZB) 0 191 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TBP in GM12878 from ENCODE 3 (ENCFF896UZB)\ parent encTfChipPk off\ shortLabel GM12878 TBP\ subGroups cellType=GM12878 factor=TBP\ track encTfChipPkENCFF896UZB\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_fwd H9MelanocyticInduction_Day03Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward 0 191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_fwd H9MelanocyticInduction_Day03Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward 1 191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwK562Signal K562 Sg bigWig 0 38914.2 K562 lymphoblast chronic myeloid leukemia cell line DNaseI Signal from ENCODE 0 191 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel K562 lymphoblast chronic myeloid leukemia cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel K562 Sg\ subGroups view=c_Signal cellType=K562 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwK562Signal\ type bigWig 0 38914.2\ wgEncodeRegDnaseUwA549Signal A549 Sg bigWig 0 30091.1 A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE 0 192 254 93 85 254 174 170 0 0 0 regulation 1 color 254,93,85\ longLabel A549 lung adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel A549 Sg\ subGroups view=c_Signal cellType=A549 treatment=n_a tissue=lung cancer=cancer\ track wgEncodeRegDnaseUwA549Signal\ type bigWig 0 30091.1\ ENCFF700SCP ENCFF700SCP bigWig Neural progenitor cell, female embryo (5 days): (5) CTCF, ENCFF700SCP 2 192 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF700SCP.bw\ color 0,176,240\ longLabel Neural progenitor cell, female embryo (5 days): (5) CTCF, ENCFF700SCP\ maxHeightPixels 30\ parent CTCF_view off\ priority 117.4\ shortLabel ENCFF700SCP\ subGroups organ=brain view=CTCF_view simpleBiosample=neural_progenitor_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF700SCP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF563IUT ENCSR000BIJ Peak bigBed 5 GM12891 SPI1 peaks 4 192 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/589c32bd-ed1e-49ee-94a8-9d88ae6e47f8/ENCFF563IUT.bigBed\ labelFields none\ longLabel GM12891 SPI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF563IUT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF112WLO ENCSR000DRR Signal bigWig GM12874 CTCF signal 2 192 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6fec2840-d394-4924-93ca-195de70ae7b3/ENCFF112WLO.bigWig\ color 0,176,240\ longLabel GM12874 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRR Signal\ track wgEncodeReg4Epigenetics_ENCFF112WLO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF535BQI ENCSR111PSY - strand bigWig Activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours - strand total RNA-seq signal 2 192 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/1e64f287-2d31-4412-afdc-a0a52d528e30/ENCFF535BQI.bigWig\ color 254,75,173\ longLabel Activated T-cell male adult (42 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR111PSY - strand\ track wgEncodeReg4RnaSeq_ENCFF535BQI\ type bigWig\ visibility full\ gastFundEp0RX Gastric fundus - Epithelial - Z000000RX bigWig Methylation Atlas: Gastric fundus - Epithelial - Z000000RX 2 192 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastFundEp0RX.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric fundus - Epithelial - Z000000RX\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 192\ shortLabel Gastric fundus - Epithelial - Z000000RX\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastFundEp0RX\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF971VHK GM12878 TBX21 narrowPeak Transcription Factor ChIP-seq Peaks of TBX21 in GM12878 from ENCODE 3 (ENCFF971VHK) 0 192 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TBX21 in GM12878 from ENCODE 3 (ENCFF971VHK)\ parent encTfChipPk off\ shortLabel GM12878 TBX21\ subGroups cellType=GM12878 factor=TBX21\ track encTfChipPkENCFF971VHK\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_rev H9MelanocyticInduction_Day03Br1- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse 0 192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_rev H9MelanocyticInduction_Day03Br1- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse 1 192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep1%20%28H9EB-1%20d3%29.CNhs12895.12629-134F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep1 (H9EB-1 d3)_CNhs12895_12629-134F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12629-134F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep1H9EB1D3_CNhs12895_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12629-134F1\ urlLabel FANTOM5 Details:\ ENCFF536VOI ENCFF536VOI bigWig Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (5) CTCF, ENCFF536VOI 2 193 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF536VOI.bw\ color 0,176,240\ longLabel Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (5) CTCF, ENCFF536VOI\ maxHeightPixels 30\ parent CTCF_view off\ priority 33.4\ shortLabel ENCFF536VOI\ subGroups organ=brain view=CTCF_view simpleBiosample=glutamatergic_neuron-_male_adult__53_years__male_adult__53_years__nuclear_fraction biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCtcf\ track ENCFF536VOI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF419HTJ ENCSR000BIJ Signal bigWig GM12891 SPI1 ENCSR000BIJ signal 2 193 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8d487068-4961-463c-918e-c224be941d97/ENCFF419HTJ.bigWig\ color 254,75,173\ longLabel GM12891 SPI1 ENCSR000BIJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIJ Signal\ track wgEncodeReg4TfChip_ENCFF419HTJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF930OTV ENCSR000DRS Peak bigBed 5 GM12875 H3K4me3 peak 4 193 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/d72cf11a-9dd6-49ce-914d-39fc8d3e0a9d/ENCFF930OTV.bigBed\ color 255,0,0\ longLabel GM12875 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRS Peak\ track wgEncodeReg4Epigenetics_ENCFF930OTV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF638RVA ENCSR113CCF + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 + strand total RNA-seq signal 2 193 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/0098ac9f-c7ad-443f-b69a-a9f8fffd279e/ENCFF638RVA.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR113CCF + strand\ track wgEncodeReg4RnaSeq_ENCFF638RVA\ type bigWig\ visibility full\ gastFundEp0SK Gastric fundus - Epithelial - Z000000SK bigWig Methylation Atlas: Gastric fundus - Epithelial - Z000000SK 2 193 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastFundEp0SK.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric fundus - Epithelial - Z000000SK\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 193\ shortLabel Gastric fundus - Epithelial - Z000000SK\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastFundEp0SK\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF768VSH GM12878 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF768VSH) 0 193 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF768VSH)\ parent encTfChipPk off\ shortLabel GM12878 TCF12 1\ subGroups cellType=GM12878 factor=TCF12\ track encTfChipPkENCFF768VSH\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_fwd H9MelanocyticInduction_Day03Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward 0 193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_fwd H9MelanocyticInduction_Day03Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward 1 193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwLncapSignal LNCaP Sg bigWig 0 37372.7 LNCaP prostate adenocarcinoma cell line DNaseI Signal from ENCODE 0 193 255 102 85 255 178 170 0 0 0 regulation 1 color 255,102,85\ longLabel LNCaP prostate adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel LNCaP Sg\ subGroups view=c_Signal cellType=LNCaP treatment=n_a tissue=prostate cancer=cancer\ track wgEncodeRegDnaseUwLncapSignal\ type bigWig 0 37372.7\ ENCFF541XGP ENCFF541XGP bigWig Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (5) CTCF, ENCFF541XGP 2 194 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF541XGP.bw\ color 0,176,240\ longLabel Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (5) CTCF, ENCFF541XGP\ maxHeightPixels 30\ parent CTCF_view off\ priority 12.4\ shortLabel ENCFF541XGP\ subGroups organ=brain view=CTCF_view simpleBiosample=bipolar_neuron__treated_-_male_adult__53_years__treated_with_0_5_ug_mL_doxycycline_hyclate_for_4_days biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCtcf\ track ENCFF541XGP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF379FCI ENCSR000BIK Peak bigBed 5 GM12891 POLR2A peaks 4 194 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5ab28a36-45e1-4713-b6b5-5957a15b8131/ENCFF379FCI.bigBed\ labelFields none\ longLabel GM12891 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF379FCI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF016QKQ ENCSR000DRS Signal bigWig GM12875 H3K4me3 signal 2 194 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/910cd270-446d-4f83-88bc-07b3bc6160d5/ENCFF016QKQ.bigWig\ color 255,0,0\ longLabel GM12875 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRS Signal\ track wgEncodeReg4Epigenetics_ENCFF016QKQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF645QTA ENCSR113CCF - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 - strand total RNA-seq signal 2 194 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/f136f5b0-f001-4e86-8a14-59b6f05414fd/ENCFF645QTA.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR113CCF - strand\ track wgEncodeReg4RnaSeq_ENCFF645QTA\ type bigWig\ visibility full\ gastFundEp0SV Gastric fundus - Epithelial - Z000000SV bigWig Methylation Atlas: Gastric fundus - Epithelial - Z000000SV 2 194 60 179 113 157 217 184 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gastFundEp0SV.bw\ color 60,179,113\ longLabel Methylation Atlas: Gastric fundus - Epithelial - Z000000SV\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 194\ shortLabel Gastric fundus - Epithelial - Z000000SV\ subGroups cellType=Gastric-Ep dataType=Replicate\ track gastFundEp0SV\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF897RYA GM12878 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF897RYA) 0 194 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in GM12878 from ENCODE 3 (ENCFF897RYA)\ parent encTfChipPk off\ shortLabel GM12878 TCF12 2\ subGroups cellType=GM12878 factor=TCF12\ track encTfChipPkENCFF897RYA\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_rev H9MelanocyticInduction_Day03Br2- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse 0 194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_rev H9MelanocyticInduction_Day03Br2- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse 1 194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep2%20%28H9EB-2%20d3%29.CNhs12827.12727-135G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep2 (H9EB-2 d3)_CNhs12827_12727-135G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12727-135G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep2H9EB2D3_CNhs12827_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12727-135G9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmecSignal HMEC Sg bigWig 0 32097.2 HMEC mammary epithelium DNaseI Signal from ENCODE 0 194 255 112 85 255 183 170 0 0 0 regulation 1 color 255,112,85\ longLabel HMEC mammary epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMEC Sg\ subGroups view=c_Signal cellType=HMEC treatment=n_a tissue=breast cancer=normal\ track wgEncodeRegDnaseUwHmecSignal\ type bigWig 0 32097.2\ ENCFF569HGW ENCFF569HGW bigWig Astrocyte, male adult (53 years): (5) CTCF, ENCFF569HGW 2 195 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF569HGW.bw\ color 0,176,240\ longLabel Astrocyte, male adult (53 years): (5) CTCF, ENCFF569HGW\ maxHeightPixels 30\ parent CTCF_view off\ priority 11.4\ shortLabel ENCFF569HGW\ subGroups organ=brain view=CTCF_view simpleBiosample=astrocyte-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCtcf\ track ENCFF569HGW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF960VMU ENCSR000BIK Signal bigWig GM12891 POLR2A ENCSR000BIK signal 2 195 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/23125eec-d17e-40c4-bd85-68e53bc94c32/ENCFF960VMU.bigWig\ color 254,75,173\ longLabel GM12891 POLR2A ENCSR000BIK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIK Signal\ track wgEncodeReg4TfChip_ENCFF960VMU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF081UCQ ENCSR000DRU Peak bigBed 5 GM12875 CTCF peak 4 195 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d437eb5e-d1c7-47e1-ae10-16932163d895/ENCFF081UCQ.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12875 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRU Peak\ track wgEncodeReg4Epigenetics_ENCFF081UCQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF823LKJ ENCSR113HQM + strand bigWig Uterus tissue female adult (53 years) + strand total RNA-seq signal 2 195 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/03/754734d4-1566-4384-a758-5628a71f8008/ENCFF823LKJ.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR113HQM + strand\ track wgEncodeReg4RnaSeq_ENCFF823LKJ\ type bigWig\ visibility full\ encTfChipPkENCFF152RNE GM12878 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in GM12878 from ENCODE 3 (ENCFF152RNE) 0 195 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in GM12878 from ENCODE 3 (ENCFF152RNE)\ parent encTfChipPk off\ shortLabel GM12878 TCF7\ subGroups cellType=GM12878 factor=TCF7\ track encTfChipPkENCFF152RNE\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_fwd H9MelanocyticInduction_Day03Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward 0 195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_fwd H9MelanocyticInduction_Day03Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward 1 195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ smallIntEpMerged Small Intestine Epithelium Merged bigWig Methylation Atlas: Small Intestine Epithelium Merged Samples 2 195 46 139 87 150 197 171 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/smallIntEpMerged.bw\ color 46,139,87\ longLabel Methylation Atlas: Small Intestine Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 195\ shortLabel Small Intestine Epithelium Merged\ subGroups cellType=Small-Int-Ep dataType=Merged\ track smallIntEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwT47dSignal T-47D Sg bigWig 0 34214.8 T-47D mammary ductal carcinoma cell line DNaseI Signal from ENCODE 0 195 255 124 85 255 189 170 0 0 0 regulation 1 color 255,124,85\ longLabel T-47D mammary ductal carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel T-47D Sg\ subGroups view=c_Signal cellType=T-47D treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwT47dSignal\ type bigWig 0 34214.8\ ENCFF714NPP ENCFF714NPP bigWig Astrocyte: (5) CTCF, ENCFF714NPP 2 196 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF714NPP.bw\ color 0,176,240\ longLabel Astrocyte: (5) CTCF, ENCFF714NPP\ maxHeightPixels 30\ parent CTCF_view off\ priority 10.4\ shortLabel ENCFF714NPP\ subGroups organ=brain view=CTCF_view simpleBiosample=astrocyte biosampleType=primary_cell donor=ENCDO916IIE dataType=typeCtcf\ track ENCFF714NPP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF127ICP ENCSR000BIL Peak bigBed 5 GM12891 POLR2AphosphoS5 peaks 4 196 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/169ef314-b8ef-4ce9-b8c8-c28d897446b1/ENCFF127ICP.bigBed\ labelFields none\ longLabel GM12891 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF127ICP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF872JBW ENCSR000DRU Signal bigWig GM12875 CTCF signal 2 196 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ec09c88d-e926-478d-8fb2-827404de9b17/ENCFF872JBW.bigWig\ color 0,176,240\ longLabel GM12875 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRU Signal\ track wgEncodeReg4Epigenetics_ENCFF872JBW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF572MQV ENCSR113HQM - strand bigWig Uterus tissue female adult (53 years) - strand total RNA-seq signal 2 196 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/03/45b3756c-881b-46e9-9b12-36fd9b723bcb/ENCFF572MQV.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR113HQM - strand\ track wgEncodeReg4RnaSeq_ENCFF572MQV\ type bigWig\ visibility full\ encTfChipPkENCFF830TFU GM12878 TRIM22 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF830TFU) 0 196 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF830TFU)\ parent encTfChipPk on\ shortLabel GM12878 TRIM22 1\ subGroups cellType=GM12878 factor=TRIM22\ track encTfChipPkENCFF830TFU\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_rev H9MelanocyticInduction_Day03Br3- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse 0 196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_rev H9MelanocyticInduction_Day03Br3- bigWig H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse 1 196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day03%2c%20biol_rep3%20%28H9EB-3%20d3%29.CNhs12910.12825-136I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day03, biol_rep3 (H9EB-3 d3)_CNhs12910_12825-136I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12825-136I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day03Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay03BiolRep3H9EB3D3_CNhs12910_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12825-136I8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwPanc1Signal PANC-1 Sg bigWig 0 12279.3 PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE 0 196 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel PANC-1 pancreatic carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel PANC-1 Sg\ subGroups view=c_Signal cellType=PANC-1 treatment=n_a tissue=pancreas cancer=cancer\ track wgEncodeRegDnaseUwPanc1Signal\ type bigWig 0 12279.3\ smIntEndo436 Small int - Endocrine - Z00000436 bigWig Methylation Atlas: Small int - Endocrine - Z00000436 2 196 46 139 87 150 197 171 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/smIntEndo436.bw\ color 46,139,87\ longLabel Methylation Atlas: Small int - Endocrine - Z00000436\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 196\ shortLabel Small int - Endocrine - Z00000436\ subGroups cellType=Small-Int-Ep dataType=Replicate\ track smIntEndo436\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF782LSR ENCFF782LSR bigWig Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF782LSR 2 197 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF782LSR.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF782LSR\ maxHeightPixels 30\ parent CTCF_view off\ priority 106.4\ shortLabel ENCFF782LSR\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO006DAA dataType=typeCtcf\ track ENCFF782LSR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF443CZX ENCSR000BIL Signal bigWig GM12891 POLR2AphosphoS5 ENCSR000BIL signal 2 197 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/625e70a5-4eec-4279-bfcb-f0674ae30fe8/ENCFF443CZX.bigWig\ color 254,75,173\ longLabel GM12891 POLR2AphosphoS5 ENCSR000BIL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIL Signal\ track wgEncodeReg4TfChip_ENCFF443CZX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF501HRQ ENCSR000DRY Peak bigBed 5 GM12878 H3K4me3 peak 4 197 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/57c6d689-14dc-4f55-8aad-48e59984ca1d/ENCFF501HRQ.bigBed\ color 255,0,0\ longLabel GM12878 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRY Peak\ track wgEncodeReg4Epigenetics_ENCFF501HRQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF767MLU ENCSR118TVR + strand bigWig Epithelial cell of proximal tubule + strand total RNA-seq signal 2 197 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/ff9086c6-c9f9-4a5d-9a64-29c389d9fa8b/ENCFF767MLU.bigWig\ color 92,161,153\ longLabel Epithelial cell of proximal tubule + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR118TVR + strand\ track wgEncodeReg4RnaSeq_ENCFF767MLU\ type bigWig\ visibility full\ encTfChipPkENCFF552WAH GM12878 TRIM22 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF552WAH) 0 197 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in GM12878 from ENCODE 3 (ENCFF552WAH)\ parent encTfChipPk off\ shortLabel GM12878 TRIM22 2\ subGroups cellType=GM12878 factor=TRIM22\ track encTfChipPkENCFF552WAH\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_fwd H9MelanocyticInduction_Day06Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward 0 197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_fwd H9MelanocyticInduction_Day06Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward 1 197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHct116Signal HCT-116 Sg bigWig 0 27405.3 HCT-116 colorectal carcinoma cell line DNaseI Signal from ENCODE 0 197 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel HCT-116 colorectal carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCT-116 Sg\ subGroups view=c_Signal cellType=HCT-116 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwHct116Signal\ type bigWig 0 27405.3\ smIntEp0RT Small int - Epithelial - Z000000RT bigWig Methylation Atlas: Small int - Epithelial - Z000000RT 2 197 46 139 87 150 197 171 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/smIntEp0RT.bw\ color 46,139,87\ longLabel Methylation Atlas: Small int - Epithelial - Z000000RT\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 197\ shortLabel Small int - Epithelial - Z000000RT\ subGroups cellType=Small-Int-Ep dataType=Replicate\ track smIntEp0RT\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF685MPU ENCFF685MPU bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF685MPU 2 198 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF685MPU.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF685MPU\ maxHeightPixels 30\ parent CTCF_view off\ priority 86.4\ shortLabel ENCFF685MPU\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO033BMB dataType=typeCtcf\ track ENCFF685MPU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF254YPA ENCSR000BIM Peak bigBed 5 GM12891 TAF1 peaks 4 198 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/fde94a06-3de5-4345-83f6-57edf6256b5d/ENCFF254YPA.bigBed\ labelFields none\ longLabel GM12891 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF254YPA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF280PUF ENCSR000DRY Signal bigWig GM12878 H3K4me3 signal 2 198 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/a575c332-f745-4495-8872-170d16b7c6e3/ENCFF280PUF.bigWig\ color 255,0,0\ longLabel GM12878 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRY Signal\ track wgEncodeReg4Epigenetics_ENCFF280PUF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF991ZXA ENCSR118TVR - strand bigWig Epithelial cell of proximal tubule - strand total RNA-seq signal 2 198 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/a672e2ea-c37b-4e8c-bb75-99237036fb8e/ENCFF991ZXA.bigWig\ color 92,161,153\ longLabel Epithelial cell of proximal tubule - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR118TVR - strand\ track wgEncodeReg4RnaSeq_ENCFF991ZXA\ type bigWig\ visibility full\ encTfChipPkENCFF295ZLM GM12878 UBTF narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in GM12878 from ENCODE 3 (ENCFF295ZLM) 0 198 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in GM12878 from ENCODE 3 (ENCFF295ZLM)\ parent encTfChipPk off\ shortLabel GM12878 UBTF\ subGroups cellType=GM12878 factor=UBTF\ track encTfChipPkENCFF295ZLM\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_rev H9MelanocyticInduction_Day06Br1- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse 0 198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_rev H9MelanocyticInduction_Day06Br1- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse 1 198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep1%20%28H9EB-1%20d6%29.CNhs12896.12630-134F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep1 (H9EB-1 d6)_CNhs12896_12630-134F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12630-134F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep1H9EB1D6_CNhs12896_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12630-134F2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhberaSignal NHBE_RA Sg bigWig 0 31238.7 NHBE_RA bronchial epithelium, RA treated DNaseI Signal from ENCODE 0 198 255 154 85 255 204 170 0 0 0 regulation 1 color 255,154,85\ longLabel NHBE_RA bronchial epithelium, RA treated DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NHBE_RA Sg\ subGroups view=c_Signal cellType=NHBE_RA treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhberaSignal\ type bigWig 0 31238.7\ smIntEp0UW Small int - Epithelial - Z000000UW bigWig Methylation Atlas: Small int - Epithelial - Z000000UW 2 198 46 139 87 150 197 171 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/smIntEp0UW.bw\ color 46,139,87\ longLabel Methylation Atlas: Small int - Epithelial - Z000000UW\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 198\ shortLabel Small int - Epithelial - Z000000UW\ subGroups cellType=Small-Int-Ep dataType=Replicate\ track smIntEp0UW\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF302UYV ENCFF302UYV bigWig Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (5) CTCF, ENCFF302UYV 2 199 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF302UYV.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (5) CTCF, ENCFF302UYV\ maxHeightPixels 30\ parent CTCF_view off\ priority 71.4\ shortLabel ENCFF302UYV\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__88_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO070VNS dataType=typeCtcf\ track ENCFF302UYV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF635EWE ENCSR000BIM Signal bigWig GM12891 TAF1 ENCSR000BIM signal 2 199 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4ad3230d-1d17-46b0-bf54-882d265a8098/ENCFF635EWE.bigWig\ color 254,75,173\ longLabel GM12891 TAF1 ENCSR000BIM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIM Signal\ track wgEncodeReg4TfChip_ENCFF635EWE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF485TGR ENCSR000DRZ Peak bigBed 5 GM12878 CTCF peak 4 199 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/57d0d91e-7776-40b2-a625-07b2b5791ecb/ENCFF485TGR.bigBed\ color 0,176,240\ labelFields none\ longLabel GM12878 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRZ Peak\ track wgEncodeReg4Epigenetics_ENCFF485TGR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF962EZE ENCSR128CYL + strand bigWig Panc1 + strand total RNA-seq signal 2 199 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/4873e733-927c-4c7f-9a03-3a6553be112e/ENCFF962EZE.bigWig\ color 175,100,41\ longLabel Panc1 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR128CYL + strand\ track wgEncodeReg4RnaSeq_ENCFF962EZE\ type bigWig\ visibility full\ encTfChipPkENCFF514SWA GM12878 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in GM12878 from ENCODE 3 (ENCFF514SWA) 0 199 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in GM12878 from ENCODE 3 (ENCFF514SWA)\ parent encTfChipPk off\ shortLabel GM12878 USF2\ subGroups cellType=GM12878 factor=USF2\ track encTfChipPkENCFF514SWA\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_fwd H9MelanocyticInduction_Day06Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward 0 199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_fwd H9MelanocyticInduction_Day06Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward 1 199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffSignal HFF Sg bigWig 0 17635.9 HFF foreskin fibroblast DNaseI Signal from ENCODE 0 199 255 163 85 255 209 170 0 0 0 regulation 1 color 255,163,85\ longLabel HFF foreskin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HFF Sg\ subGroups view=c_Signal cellType=HFF treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffSignal\ type bigWig 0 17635.9\ smIntEp0UY Small int - Epithelial - Z000000UY bigWig Methylation Atlas: Small int - Epithelial - Z000000UY 2 199 46 139 87 150 197 171 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/smIntEp0UY.bw\ color 46,139,87\ longLabel Methylation Atlas: Small int - Epithelial - Z000000UY\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 199\ shortLabel Small int - Epithelial - Z000000UY\ subGroups cellType=Small-Int-Ep dataType=Replicate\ track smIntEp0UY\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF081IRZ ENCFF081IRZ bigWig Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (5) CTCF, ENCFF081IRZ 2 200 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF081IRZ.bw\ color 0,176,240\ longLabel Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (5) CTCF, ENCFF081IRZ\ maxHeightPixels 30\ parent CTCF_view off\ priority 77.4\ shortLabel ENCFF081IRZ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__81_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO077CCP dataType=typeCtcf\ track ENCFF081IRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF942SOJ ENCSR000BIQ Peak bigBed 5 H1 SIX5 peaks 4 200 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/cbc2b9fc-d61f-445f-b13d-7dc4805e1182/ENCFF942SOJ.bigBed\ labelFields none\ longLabel H1 SIX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF942SOJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644EEX ENCSR000DRZ Signal bigWig GM12878 CTCF signal 2 200 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/03eeca15-17a9-47ac-aa63-08d471c2e25d/ENCFF644EEX.bigWig\ color 0,176,240\ longLabel GM12878 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DRZ Signal\ track wgEncodeReg4Epigenetics_ENCFF644EEX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF427HZZ ENCSR128CYL - strand bigWig Panc1 - strand total RNA-seq signal 2 200 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/21e3c3c4-9ec8-48b5-a99b-e6bb78f79195/ENCFF427HZZ.bigWig\ color 175,100,41\ longLabel Panc1 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR128CYL - strand\ track wgEncodeReg4RnaSeq_ENCFF427HZZ\ type bigWig\ visibility full\ encTfChipPkENCFF514DDI GM12878 WRNIP1 narrowPeak Transcription Factor ChIP-seq Peaks of WRNIP1 in GM12878 from ENCODE 3 (ENCFF514DDI) 0 200 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of WRNIP1 in GM12878 from ENCODE 3 (ENCFF514DDI)\ parent encTfChipPk off\ shortLabel GM12878 WRNIP1\ subGroups cellType=GM12878 factor=WRNIP1\ track encTfChipPkENCFF514DDI\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_rev H9MelanocyticInduction_Day06Br2- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse 0 200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_rev H9MelanocyticInduction_Day06Br2- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse 1 200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep2%20%28H9EB-2%20d6%29.CNhs12828.12728-135H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep2 (H9EB-2 d6)_CNhs12828_12728-135H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12728-135H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep2H9EB2D6_CNhs12828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12728-135H1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHffmycSignal HFF-Myc Sg bigWig 0 23416.2 HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE 0 200 255 165 85 255 210 170 0 0 0 regulation 1 color 255,165,85\ longLabel HFF-Myc foreskin fibroblast cell line, cMyc DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HFF-Myc Sg\ subGroups view=c_Signal cellType=HFF-Myc treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwHffmycSignal\ type bigWig 0 23416.2\ smIntEp42V Small int - Epithelial - Z0000042V bigWig Methylation Atlas: Small int - Epithelial - Z0000042V 2 200 46 139 87 150 197 171 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/smIntEp42V.bw\ color 46,139,87\ longLabel Methylation Atlas: Small int - Epithelial - Z0000042V\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 200\ shortLabel Small int - Epithelial - Z0000042V\ subGroups cellType=Small-Int-Ep dataType=Replicate\ track smIntEp42V\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ colonEpMerged Colon Epithelium Merged bigWig Methylation Atlas: Colon Epithelium Merged Samples 2 201 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonEpMerged.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals on\ priority 201\ shortLabel Colon Epithelium Merged\ subGroups cellType=Colon-Ep dataType=Merged\ track colonEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF263VJQ ENCFF263VJQ bigWig Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (5) CTCF, ENCFF263VJQ 2 201 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF263VJQ.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (5) CTCF, ENCFF263VJQ\ maxHeightPixels 30\ parent CTCF_view off\ priority 69.4\ shortLabel ENCFF263VJQ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__85_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO080EZF dataType=typeCtcf\ track ENCFF263VJQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF724HLZ ENCSR000BIQ Signal bigWig H1 SIX5 ENCSR000BIQ signal 2 201 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f7f785cf-20f8-48cd-b65a-396643871d44/ENCFF724HLZ.bigWig\ color 118,158,101\ longLabel H1 SIX5 ENCSR000BIQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIQ Signal\ track wgEncodeReg4TfChip_ENCFF724HLZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF509POC ENCSR000DSD Peak bigBed 5 Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days H3K4me3 peak 4 201 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/3ab6bb47-3657-4dc3-86e8-865f0ae9026f/ENCFF509POC.bigBed\ color 255,0,0\ longLabel Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSD Peak\ track wgEncodeReg4Epigenetics_ENCFF509POC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF547RAL ENCSR129VBC + strand bigWig Astrocyte + strand total RNA-seq signal 2 201 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/f7a0b353-653f-4c4c-b9d6-2f019e505a8f/ENCFF547RAL.bigWig\ color 155,155,18\ longLabel Astrocyte + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR129VBC + strand\ track wgEncodeReg4RnaSeq_ENCFF547RAL\ type bigWig\ visibility full\ encTfChipPkENCFF223MUF GM12878 YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF223MUF) 0 201 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF223MUF)\ parent encTfChipPk off\ shortLabel GM12878 YY1 1\ subGroups cellType=GM12878 factor=YY1\ track encTfChipPkENCFF223MUF\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_fwd H9MelanocyticInduction_Day06Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward 0 201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_fwd H9MelanocyticInduction_Day06Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward 1 201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNt2d1Signal NT2-D1 Sg bigWig 0 8351.64 NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Signal from ENCODE 0 201 255 173 85 255 214 170 0 0 0 regulation 1 color 255,173,85\ longLabel NT2-D1 embryonal carcinoma (NTera2) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NT2-D1 Sg\ subGroups view=c_Signal cellType=NT2-D1 treatment=n_a tissue=testis cancer=cancer\ track wgEncodeRegDnaseUwNt2d1Signal\ type bigWig 0 8351.64\ wgEncodeRegDnaseUwBjSignal BJ Sg bigWig 0 28788.2 BJ foreskin fibroblast cell line DNaseI Signal from ENCODE 0 202 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel BJ foreskin fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel BJ Sg\ subGroups view=c_Signal cellType=BJ treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwBjSignal\ type bigWig 0 28788.2\ colonLeftEndo44J Colon Left - Endocrine - Z0000044J bigWig Methylation Atlas: Colon Left - Endocrine - Z0000044J 2 202 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonLeftEndo44J.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Left - Endocrine - Z0000044J\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 202\ shortLabel Colon Left - Endocrine - Z0000044J\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonLeftEndo44J\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF796CNP ENCFF796CNP bigWig Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (5) CTCF, ENCFF796CNP 2 202 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF796CNP.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (5) CTCF, ENCFF796CNP\ maxHeightPixels 30\ parent CTCF_view off\ priority 68.4\ shortLabel ENCFF796CNP\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__81_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO097MEH dataType=typeCtcf\ track ENCFF796CNP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF263FUH ENCSR000BIR Peak bigBed 5 H1 SP1 peaks 4 202 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e6ce7e66-2182-4554-8899-3cb3a64a7fa3/ENCFF263FUH.bigBed\ labelFields none\ longLabel H1 SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF263FUH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF877TVP ENCSR000DSD Signal bigWig Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days H3K4me3 signal 2 202 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/f1b5524d-3e2c-4533-a787-a436455e3c58/ENCFF877TVP.bigWig\ color 255,0,0\ longLabel Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSD Signal\ track wgEncodeReg4Epigenetics_ENCFF877TVP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF106NHZ ENCSR129VBC - strand bigWig Astrocyte - strand total RNA-seq signal 2 202 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/9b64cc5f-8560-4a99-8679-227e34537bc5/ENCFF106NHZ.bigWig\ color 155,155,18\ longLabel Astrocyte - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR129VBC - strand\ track wgEncodeReg4RnaSeq_ENCFF106NHZ\ type bigWig\ visibility full\ encTfChipPkENCFF752IXD GM12878 YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF752IXD) 0 202 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12878 from ENCODE 3 (ENCFF752IXD)\ parent encTfChipPk off\ shortLabel GM12878 YY1 2\ subGroups cellType=GM12878 factor=YY1\ track encTfChipPkENCFF752IXD\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_rev H9MelanocyticInduction_Day06Br3- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse 0 202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_rev H9MelanocyticInduction_Day06Br3- bigWig H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse 1 202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day06%2c%20biol_rep3%20%28H9EB-3%20d6%29.CNhs12911.12826-136I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day06, biol_rep3 (H9EB-3 d6)_CNhs12911_12826-136I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12826-136I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day06Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay06BiolRep3H9EB3D6_CNhs12911_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12826-136I9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwAg09309Signal AG09309 Sg bigWig 0 29145.4 AG09309 skin fibroblast DNaseI Signal from ENCODE 0 203 255 186 85 255 220 170 0 0 0 regulation 1 color 255,186,85\ longLabel AG09309 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG09309 Sg\ subGroups view=c_Signal cellType=AG09309 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg09309Signal\ type bigWig 0 29145.4\ colonLeftEndo44T Colon Left - Endocrine - Z0000044T bigWig Methylation Atlas: Colon Left - Endocrine - Z0000044T 2 203 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonLeftEndo44T.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Left - Endocrine - Z0000044T\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 203\ shortLabel Colon Left - Endocrine - Z0000044T\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonLeftEndo44T\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF554FTX ENCFF554FTX bigWig Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF554FTX 2 203 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF554FTX.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF554FTX\ maxHeightPixels 30\ parent CTCF_view off\ priority 105.4\ shortLabel ENCFF554FTX\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO101GPB dataType=typeCtcf\ track ENCFF554FTX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF684HIL ENCSR000BIR Signal bigWig H1 SP1 ENCSR000BIR signal 2 203 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/eb20dc1d-a4a6-4d17-8368-0b3b5321635f/ENCFF684HIL.bigWig\ color 118,158,101\ longLabel H1 SP1 ENCSR000BIR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIR Signal\ track wgEncodeReg4TfChip_ENCFF684HIL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF421HVO ENCSR000DSE Peak bigBed 5 Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days H3K4me3 peak 4 203 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/cea22c13-e190-4023-922e-7ecefe9b1e08/ENCFF421HVO.bigBed\ color 255,0,0\ longLabel Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSE Peak\ track wgEncodeReg4Epigenetics_ENCFF421HVO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF568EVH ENCSR130TZW + strand bigWig Posterior vena cava tissue female adult (47 years) + strand total RNA-seq signal 2 203 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/0bc63de1-3834-4685-858a-c9a7c5d4b336/ENCFF568EVH.bigWig\ color 255,37,41\ longLabel Posterior vena cava tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR130TZW + strand\ track wgEncodeReg4RnaSeq_ENCFF568EVH\ type bigWig\ visibility full\ encTfChipPkENCFF630FLK GM12878 ZBED1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBED1 in GM12878 from ENCODE 3 (ENCFF630FLK) 0 203 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBED1 in GM12878 from ENCODE 3 (ENCFF630FLK)\ parent encTfChipPk off\ shortLabel GM12878 ZBED1\ subGroups cellType=GM12878 factor=ZBED1\ track encTfChipPkENCFF630FLK\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_fwd H9MelanocyticInduction_Day09Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward 0 203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_fwd H9MelanocyticInduction_Day09Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward 1 203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ colonLeftEp0VA Colon Left - Epithelial - Z000000VA bigWig Methylation Atlas: Colon Left - Epithelial - Z000000VA 2 204 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonLeftEp0VA.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Left - Epithelial - Z000000VA\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 204\ shortLabel Colon Left - Epithelial - Z000000VA\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonLeftEp0VA\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF072ETP ENCFF072ETP bigWig Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (5) CTCF, ENCFF072ETP 2 204 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF072ETP.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (5) CTCF, ENCFF072ETP\ maxHeightPixels 30\ parent CTCF_view off\ priority 83.4\ shortLabel ENCFF072ETP\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__88_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO151OJB dataType=typeCtcf\ track ENCFF072ETP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF896IJG ENCSR000BIS Peak bigBed 5 H1 SIN3A peaks 4 204 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/467e0671-92a9-413b-9ebc-3cb1a573b3e6/ENCFF896IJG.bigBed\ labelFields none\ longLabel H1 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF896IJG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF394XIU ENCSR000DSE Signal bigWig Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days H3K4me3 signal 2 204 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/e606ec28-ac04-4cc0-85f6-b3f82a5d2a8d/ENCFF394XIU.bigWig\ color 255,0,0\ longLabel Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSE Signal\ track wgEncodeReg4Epigenetics_ENCFF394XIU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF917VEL ENCSR130TZW - strand bigWig Posterior vena cava tissue female adult (47 years) - strand total RNA-seq signal 2 204 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/890b6782-bb50-4847-bad5-a782304d708c/ENCFF917VEL.bigWig\ color 255,37,41\ longLabel Posterior vena cava tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR130TZW - strand\ track wgEncodeReg4RnaSeq_ENCFF917VEL\ type bigWig\ visibility full\ encTfChipPkENCFF773OQL GM12878 ZBTB33 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF773OQL) 0 204 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF773OQL)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB33 1\ subGroups cellType=GM12878 factor=ZBTB33\ track encTfChipPkENCFF773OQL\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_rev H9MelanocyticInduction_Day09Br1- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse 0 204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_rev H9MelanocyticInduction_Day09Br1- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse 1 204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep1%20%28H9EB-1%20d9%29.CNhs12897.12631-134F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep1 (H9EB-1 d9)_CNhs12897_12631-134F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12631-134F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep1H9EB1D9_CNhs12897_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12631-134F3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHnpcepicSignal HNPCEpiC Sg bigWig 0 26522.6 HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE 0 204 255 188 85 255 221 170 0 0 0 regulation 1 color 255,188,85\ longLabel HNPCEpiC non-pigmented ciliary epithelium (NPCEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HNPCEpiC Sg\ subGroups view=c_Signal cellType=HNPCEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHnpcepicSignal\ type bigWig 0 26522.6\ colonLeftEp43B Colon Left - Epithelial - Z0000043B bigWig Methylation Atlas: Colon Left - Epithelial - Z0000043B 2 205 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonLeftEp43B.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Left - Epithelial - Z0000043B\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 205\ shortLabel Colon Left - Epithelial - Z0000043B\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonLeftEp43B\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF264VOP ENCFF264VOP bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF264VOP 2 205 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF264VOP.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF264VOP\ maxHeightPixels 30\ parent CTCF_view off\ priority 89.4\ shortLabel ENCFF264VOP\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO153NUY dataType=typeCtcf\ track ENCFF264VOP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF762YET ENCSR000BIS Signal bigWig H1 SIN3A ENCSR000BIS signal 2 205 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/9369a079-ef7c-4a75-8a5a-5a5f914a9f0d/ENCFF762YET.bigWig\ color 118,158,101\ longLabel H1 SIN3A ENCSR000BIS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIS Signal\ track wgEncodeReg4TfChip_ENCFF762YET\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF615AIM ENCSR000DSO Peak bigBed 5 Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days H3K4me3 peak 4 205 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/e66d190a-2093-4d8e-82a8-ccd7608ced66/ENCFF615AIM.bigBed\ color 255,0,0\ longLabel Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSO Peak\ track wgEncodeReg4Epigenetics_ENCFF615AIM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF263IMB ENCSR131FDP + strand bigWig Heart left ventricle tissue male adult (69 years) + strand total RNA-seq signal 2 205 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/acc3d09a-36c9-492c-9785-0e54da1d701f/ENCFF263IMB.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (69 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR131FDP + strand\ track wgEncodeReg4RnaSeq_ENCFF263IMB\ type bigWig\ visibility full\ encTfChipPkENCFF475DID GM12878 ZBTB33 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF475DID) 0 205 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in GM12878 from ENCODE 3 (ENCFF475DID)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB33 2\ subGroups cellType=GM12878 factor=ZBTB33\ track encTfChipPkENCFF475DID\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_fwd H9MelanocyticInduction_Day09Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward 0 205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_fwd H9MelanocyticInduction_Day09Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward 1 205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWi38Signal WI-38 Sg bigWig 0 21133.7 WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE 0 205 255 192 85 255 223 170 0 0 0 regulation 1 color 255,192,85\ longLabel WI-38 embryonic lung fibroblast cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel WI-38 Sg\ subGroups view=c_Signal cellType=WI-38 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi38Signal\ type bigWig 0 21133.7\ colonLeftEp43C Colon Left - Epithelial - Z0000043C bigWig Methylation Atlas: Colon Left - Epithelial - Z0000043C 2 206 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonLeftEp43C.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Left - Epithelial - Z0000043C\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 206\ shortLabel Colon Left - Epithelial - Z0000043C\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonLeftEp43C\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF891CZD ENCFF891CZD bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (5) CTCF, ENCFF891CZD 2 206 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF891CZD.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (5) CTCF, ENCFF891CZD\ maxHeightPixels 30\ parent CTCF_view off\ priority 76.4\ shortLabel ENCFF891CZD\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO201EUI dataType=typeCtcf\ track ENCFF891CZD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF203EBH ENCSR000BIT Peak bigBed 5 H1 TCF12 peaks 4 206 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3e50bbd0-55b5-45d7-b48e-583443f9d13f/ENCFF203EBH.bigBed\ labelFields none\ longLabel H1 TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF203EBH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF337QRM ENCSR000DSO Signal bigWig Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days H3K4me3 signal 2 206 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/30/b081f695-31e8-4bb9-846a-72a23b61fafd/ENCFF337QRM.bigWig\ color 255,0,0\ longLabel Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSO Signal\ track wgEncodeReg4Epigenetics_ENCFF337QRM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF279GXE ENCSR131FDP - strand bigWig Heart left ventricle tissue male adult (69 years) - strand total RNA-seq signal 2 206 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/c1a7edb3-43d8-4bd3-bc23-407e81663837/ENCFF279GXE.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (69 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR131FDP - strand\ track wgEncodeReg4RnaSeq_ENCFF279GXE\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm04503Signal GM04503 Sg bigWig 0 11390.2 GM04503 skin fibroblast DNaseI Signal from ENCODE 0 206 255 200 85 255 227 170 0 0 0 regulation 1 color 255,200,85\ longLabel GM04503 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM04503 Sg\ subGroups view=c_Signal cellType=GM04503 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04503Signal\ type bigWig 0 11390.2\ encTfChipPkENCFF084IUW GM12878 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in GM12878 from ENCODE 3 (ENCFF084IUW) 0 206 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in GM12878 from ENCODE 3 (ENCFF084IUW)\ parent encTfChipPk off\ shortLabel GM12878 ZBTB40\ subGroups cellType=GM12878 factor=ZBTB40\ track encTfChipPkENCFF084IUW\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_rev H9MelanocyticInduction_Day09Br2- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse 0 206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_rev H9MelanocyticInduction_Day09Br2- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse 1 206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep2%20%28H9EB-2%20d9%29.CNhs12829.12729-135H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep2 (H9EB-2 d9)_CNhs12829_12729-135H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12729-135H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep2H9EB2D9_CNhs12829_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12729-135H2\ urlLabel FANTOM5 Details:\ colonRightEndo44S Colon Right - Endocrine - Z0000044S bigWig Methylation Atlas: Colon Right - Endocrine - Z0000044S 2 207 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonRightEndo44S.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Right - Endocrine - Z0000044S\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 207\ shortLabel Colon Right - Endocrine - Z0000044S\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonRightEndo44S\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF961RFY ENCFF961RFY bigWig Middle frontal area 46, male adult (87 years): (5) CTCF, ENCFF961RFY 2 207 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF961RFY.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (87 years): (5) CTCF, ENCFF961RFY\ maxHeightPixels 30\ parent CTCF_view off\ priority 114.4\ shortLabel ENCFF961RFY\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__87_years_ biosampleType=tissue donor=ENCDO203ASI dataType=typeCtcf\ track ENCFF961RFY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF717UNQ ENCSR000BIT Signal bigWig H1 TCF12 ENCSR000BIT signal 2 207 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e26c67bc-7876-4642-af7e-10a7a8a7e690/ENCFF717UNQ.bigWig\ color 118,158,101\ longLabel H1 TCF12 ENCSR000BIT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIT Signal\ track wgEncodeReg4TfChip_ENCFF717UNQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF750VOF ENCSR000DSP Peak bigBed 5 Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days H3K4me3 peak 4 207 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/4810c65b-76f6-4655-89dd-c7ba145fd71f/ENCFF750VOF.bigBed\ color 255,0,0\ longLabel Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSP Peak\ track wgEncodeReg4Epigenetics_ENCFF750VOF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF198IBF ENCSR132VGJ + strand bigWig Right ventricle myocardium superior tissue male adult (60 years) + strand total RNA-seq signal 2 207 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/a1603ebd-6048-4ac1-8d70-8ad135cd35cd/ENCFF198IBF.bigWig\ color 116,50,165\ longLabel Right ventricle myocardium superior tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR132VGJ + strand\ track wgEncodeReg4RnaSeq_ENCFF198IBF\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm04504Signal GM04504 Sg bigWig 0 11566.9 GM04504 skin fibroblast DNaseI Signal from ENCODE 0 207 255 204 85 255 229 170 0 0 0 regulation 1 color 255,204,85\ longLabel GM04504 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM04504 Sg\ subGroups view=c_Signal cellType=GM04504 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwGm04504Signal\ type bigWig 0 11566.9\ encTfChipPkENCFF153TQR GM12878 ZNF143 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF153TQR) 0 207 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF153TQR)\ parent encTfChipPk off\ shortLabel GM12878 ZNF143 1\ subGroups cellType=GM12878 factor=ZNF143\ track encTfChipPkENCFF153TQR\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_fwd H9MelanocyticInduction_Day09Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward 0 207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_fwd H9MelanocyticInduction_Day09Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward 1 207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ colonRightEp0V0 Colon Right - Epithelial - Z000000V0 bigWig Methylation Atlas: Colon Right - Epithelial - Z000000V0 2 208 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonRightEp0V0.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Right - Epithelial - Z000000V0\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 208\ shortLabel Colon Right - Epithelial - Z000000V0\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonRightEp0V0\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF161XMB ENCFF161XMB bigWig Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF161XMB 2 208 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF161XMB.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF161XMB\ maxHeightPixels 30\ parent CTCF_view off\ priority 104.4\ shortLabel ENCFF161XMB\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO218FFZ dataType=typeCtcf\ track ENCFF161XMB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF090WVU ENCSR000BIU Peak bigBed 5 H1 USF1 peaks 4 208 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/9f5d3665-e071-4f89-97f8-1674697d696a/ENCFF090WVU.bigBed\ labelFields none\ longLabel H1 USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF090WVU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF178RJC ENCSR000DSP Signal bigWig Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days H3K4me3 signal 2 208 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/e2af41b1-3235-4058-9a53-2b0d0a2e30d1/ENCFF178RJC.bigWig\ color 255,0,0\ longLabel Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSP Signal\ track wgEncodeReg4Epigenetics_ENCFF178RJC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF344SXR ENCSR132VGJ - strand bigWig Right ventricle myocardium superior tissue male adult (60 years) - strand total RNA-seq signal 2 208 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/24042f10-d140-4f00-91a3-48ff09f4f65c/ENCFF344SXR.bigWig\ color 116,50,165\ longLabel Right ventricle myocardium superior tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR132VGJ - strand\ track wgEncodeReg4RnaSeq_ENCFF344SXR\ type bigWig\ visibility full\ encTfChipPkENCFF193POQ GM12878 ZNF143 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF193POQ) 0 208 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in GM12878 from ENCODE 3 (ENCFF193POQ)\ parent encTfChipPk off\ shortLabel GM12878 ZNF143 2\ subGroups cellType=GM12878 factor=ZNF143\ track encTfChipPkENCFF193POQ\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_rev H9MelanocyticInduction_Day09Br3- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse 0 208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_rev H9MelanocyticInduction_Day09Br3- bigWig H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse 1 208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day09%2c%20biol_rep3%20%28H9EB-3%20d9%29.CNhs12951.12827-137A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day09, biol_rep3 (H9EB-3 d9)_CNhs12951_12827-137A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12827-137A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day09Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay09BiolRep3H9EB3D9_CNhs12951_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12827-137A1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhlfSignal NHLF Sg bigWig 0 11719.1 NHLF lung fibroblast DNaseI Signal from ENCODE 0 208 255 209 85 255 232 170 0 0 0 regulation 1 color 255,209,85\ longLabel NHLF lung fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel NHLF Sg\ subGroups view=c_Signal cellType=NHLF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwNhlfSignal\ type bigWig 0 11719.1\ colonRightEp0V8 Colon Right - Epithelial - Z000000V8 bigWig Methylation Atlas: Colon Right - Epithelial - Z000000V8 2 209 34 139 34 144 197 144 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonRightEp0V8.bw\ color 34,139,34\ longLabel Methylation Atlas: Colon Right - Epithelial - Z000000V8\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 209\ shortLabel Colon Right - Epithelial - Z000000V8\ subGroups cellType=Colon-Ep dataType=Replicate\ track colonRightEp0V8\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF203LSD ENCFF203LSD bigWig Middle frontal area 46, female adult (78 years): (5) CTCF, ENCFF203LSD 2 209 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF203LSD.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (78 years): (5) CTCF, ENCFF203LSD\ maxHeightPixels 30\ parent CTCF_view off\ priority 94.4\ shortLabel ENCFF203LSD\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__78_years_ biosampleType=tissue donor=ENCDO236YSH dataType=typeCtcf\ track ENCFF203LSD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF697QRN ENCSR000BIU Signal bigWig H1 USF1 ENCSR000BIU signal 2 209 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/fdf82174-9145-42d2-83d8-05c06dc70236/ENCFF697QRN.bigWig\ color 118,158,101\ longLabel H1 USF1 ENCSR000BIU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIU Signal\ track wgEncodeReg4TfChip_ENCFF697QRN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF338GGK ENCSR000DSR Peak bigBed 5 H7 H3K4me3 peak 4 209 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/f677fcc4-3c5b-49bd-8e41-0261a747f8a2/ENCFF338GGK.bigBed\ color 255,0,0\ longLabel H7 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSR Peak\ track wgEncodeReg4Epigenetics_ENCFF338GGK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF160SEG ENCSR133PLR + strand bigWig Dorsolateral prefrontal cortex tissue male adult (85 years) + strand total RNA-seq signal 2 209 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/bef9e8ae-cc49-4454-bc04-141112726253/ENCFF160SEG.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (85 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR133PLR + strand\ track wgEncodeReg4RnaSeq_ENCFF160SEG\ type bigWig\ visibility full\ encTfChipPkENCFF676BIG GM12878 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in GM12878 from ENCODE 3 (ENCFF676BIG) 0 209 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in GM12878 from ENCODE 3 (ENCFF676BIG)\ parent encTfChipPk off\ shortLabel GM12878 ZNF207\ subGroups cellType=GM12878 factor=ZNF207\ track encTfChipPkENCFF676BIG\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward 0 209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward 1 209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhaSignal NH-A Sg bigWig 0 9132.47 NH-A astrocyte DNaseI Signal from ENCODE 0 209 255 210 85 255 232 170 0 0 0 regulation 1 color 255,210,85\ longLabel NH-A astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NH-A Sg\ subGroups view=c_Signal cellType=NH-A treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwNhaSignal\ type bigWig 0 9132.47\ bladderEpMerged Bladder Epithelium Merged bigWig Methylation Atlas: Bladder Epithelium Merged Samples 2 210 186 85 211 220 170 233 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bladderEpMerged.bw\ color 186,85,211\ longLabel Methylation Atlas: Bladder Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 210\ shortLabel Bladder Epithelium Merged\ subGroups cellType=Bladder-Ep dataType=Merged\ track bladderEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF488PRF ENCFF488PRF bigWig Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF488PRF 2 210 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF488PRF.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (90 or above years): (5) CTCF, ENCFF488PRF\ maxHeightPixels 30\ parent CTCF_view off\ priority 103.4\ shortLabel ENCFF488PRF\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO250PFZ dataType=typeCtcf\ track ENCFF488PRF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF036PEF ENCSR000BIV Peak bigBed 5 H1 SRF peaks 4 210 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/1adb795f-bcf4-4cef-af09-c5e5235db911/ENCFF036PEF.bigBed\ labelFields none\ longLabel H1 SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF036PEF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF309NNB ENCSR000DSR Signal bigWig H7 H3K4me3 signal 2 210 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/562a0258-6991-4154-9046-b40688b32adc/ENCFF309NNB.bigWig\ color 255,0,0\ longLabel H7 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSR Signal\ track wgEncodeReg4Epigenetics_ENCFF309NNB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF190QYM ENCSR133PLR - strand bigWig Dorsolateral prefrontal cortex tissue male adult (85 years) - strand total RNA-seq signal 2 210 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/5e7f15e0-4ee2-49b5-b28f-646a2f4d5d2a/ENCFF190QYM.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (85 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR133PLR - strand\ track wgEncodeReg4RnaSeq_ENCFF190QYM\ type bigWig\ visibility full\ encTfChipPkENCFF200SLC GM12878 ZNF217 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in GM12878 from ENCODE 3 (ENCFF200SLC) 0 210 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in GM12878 from ENCODE 3 (ENCFF200SLC)\ parent encTfChipPk off\ shortLabel GM12878 ZNF217\ subGroups cellType=GM12878 factor=ZNF217\ track encTfChipPkENCFF200SLC\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward 0 210 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_fwd H9MelanocyticInduction_Day12Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward 1 210 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHbmecSignal HBMEC Sg bigWig 0 11394.7 HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE 0 210 255 214 85 255 234 170 0 0 0 regulation 1 color 255,214,85\ longLabel HBMEC brain microvascular endothelial cell (MEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HBMEC Sg\ subGroups view=c_Signal cellType=HBMEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbmecSignal\ type bigWig 0 11394.7\ wgEncodeRegDnaseUwAg09319Signal AG09319 Sg bigWig 0 28099 AG09319 gingival fibroblast DNaseI Signal from ENCODE 0 211 255 221 85 255 238 170 0 0 0 regulation 1 color 255,221,85\ longLabel AG09319 gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG09319 Sg\ subGroups view=c_Signal cellType=AG09319 treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwAg09319Signal\ type bigWig 0 28099\ bladderEp0QM Bladder - Epithelial - Z000000QM bigWig Methylation Atlas: Bladder - Epithelial - Z000000QM 2 211 186 85 211 220 170 233 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bladderEp0QM.bw\ color 186,85,211\ longLabel Methylation Atlas: Bladder - Epithelial - Z000000QM\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 211\ shortLabel Bladder - Epithelial - Z000000QM\ subGroups cellType=Bladder-Ep dataType=Replicate\ track bladderEp0QM\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF417AGZ ENCFF417AGZ bigWig Middle frontal area 46, female adult (82 years): (5) CTCF, ENCFF417AGZ 2 211 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF417AGZ.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (82 years): (5) CTCF, ENCFF417AGZ\ maxHeightPixels 30\ parent CTCF_view off\ priority 96.4\ shortLabel ENCFF417AGZ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__82_years_ biosampleType=tissue donor=ENCDO290OPS dataType=typeCtcf\ track ENCFF417AGZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF920RYL ENCSR000BIV Signal bigWig H1 SRF ENCSR000BIV signal 2 211 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/f456c57d-2c52-423e-9145-f68d487bf413/ENCFF920RYL.bigWig\ color 118,158,101\ longLabel H1 SRF ENCSR000BIV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIV Signal\ track wgEncodeReg4TfChip_ENCFF920RYL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF213GKL ENCSR000DSU Peak bigBed 5 Astrocyte of the spinal cord CTCF peak 4 211 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/839e2b88-1090-42e1-9719-d8601a7c50f3/ENCFF213GKL.bigBed\ color 0,176,240\ labelFields none\ longLabel Astrocyte of the spinal cord CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSU Peak\ track wgEncodeReg4Epigenetics_ENCFF213GKL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF565QRM ENCSR135IAL + strand bigWig Right lobe of liver tissue female adult (41 years) + strand total RNA-seq signal 2 211 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/4882e53e-aab6-41f8-9727-bd0f1222e8bd/ENCFF565QRM.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR135IAL + strand\ track wgEncodeReg4RnaSeq_ENCFF565QRM\ type bigWig\ visibility full\ encTfChipPkENCFF942MDT GM12878 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in GM12878 from ENCODE 3 (ENCFF942MDT) 0 211 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in GM12878 from ENCODE 3 (ENCFF942MDT)\ parent encTfChipPk off\ shortLabel GM12878 ZNF384\ subGroups cellType=GM12878 factor=ZNF384\ track encTfChipPkENCFF942MDT\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse 0 211 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse 1 211 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12994.12632-134F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12994_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12994_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ bladderEp0QP Bladder - Epithelial - Z000000QP bigWig Methylation Atlas: Bladder - Epithelial - Z000000QP 2 212 186 85 211 220 170 233 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bladderEp0QP.bw\ color 186,85,211\ longLabel Methylation Atlas: Bladder - Epithelial - Z000000QP\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 212\ shortLabel Bladder - Epithelial - Z000000QP\ subGroups cellType=Bladder-Ep dataType=Replicate\ track bladderEp0QP\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF888DOQ ENCFF888DOQ bigWig Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (5) CTCF, ENCFF888DOQ 2 212 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF888DOQ.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (5) CTCF, ENCFF888DOQ\ maxHeightPixels 30\ parent CTCF_view off\ priority 82.4\ shortLabel ENCFF888DOQ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__87_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO354SJE dataType=typeCtcf\ track ENCFF888DOQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF739QFD ENCSR000BIW Peak bigBed 5 H1 GABPA peaks 4 212 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e8d74adc-3f3b-4b01-9abc-a3425f907f68/ENCFF739QFD.bigBed\ labelFields none\ longLabel H1 GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF739QFD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF387GYF ENCSR000DSU Signal bigWig Astrocyte of the spinal cord CTCF signal 2 212 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6cb3c4d7-12e3-48f7-8c9d-078cfe215fb3/ENCFF387GYF.bigWig\ color 0,176,240\ longLabel Astrocyte of the spinal cord CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSU Signal\ track wgEncodeReg4Epigenetics_ENCFF387GYF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF253OSP ENCSR135IAL - strand bigWig Right lobe of liver tissue female adult (41 years) - strand total RNA-seq signal 2 212 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/746857d3-8a95-4291-868a-052019d644b4/ENCFF253OSP.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR135IAL - strand\ track wgEncodeReg4RnaSeq_ENCFF253OSP\ type bigWig\ visibility full\ encTfChipPkENCFF615DTQ GM12878 ZNF592 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in GM12878 from ENCODE 3 (ENCFF615DTQ) 0 212 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in GM12878 from ENCODE 3 (ENCFF615DTQ)\ parent encTfChipPk off\ shortLabel GM12878 ZNF592\ subGroups cellType=GM12878 factor=ZNF592\ track encTfChipPkENCFF615DTQ\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse 0 212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_rev H9MelanocyticInduction_Day12Br1- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse 1 212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep1%20%28H9EB-1%20d12%29.CNhs12948.12632-134F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep1 (H9EB-1 d12)_CNhs12948_12632-134F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12632-134F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep1H9EB1D12_CNhs12948_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12632-134F4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHpdlfSignal HPdLF Sg bigWig 0 11009.1 HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE 0 212 255 224 85 255 239 170 0 0 0 regulation 1 color 255,224,85\ longLabel HPdLF periodontal ligament fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HPdLF Sg\ subGroups view=c_Signal cellType=HPdLF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHpdlfSignal\ type bigWig 0 11009.1\ bladderEp43F Bladder - Epithelial - Z0000043F bigWig Methylation Atlas: Bladder - Epithelial - Z0000043F 2 213 186 85 211 220 170 233 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bladderEp43F.bw\ color 186,85,211\ longLabel Methylation Atlas: Bladder - Epithelial - Z0000043F\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 213\ shortLabel Bladder - Epithelial - Z0000043F\ subGroups cellType=Bladder-Ep dataType=Replicate\ track bladderEp43F\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF258OMT ENCFF258OMT bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (5) CTCF, ENCFF258OMT 2 213 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF258OMT.bw\ color 0,176,240\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (5) CTCF, ENCFF258OMT\ maxHeightPixels 30\ parent CTCF_view off\ priority 80.4\ shortLabel ENCFF258OMT\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO359XWR dataType=typeCtcf\ track ENCFF258OMT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF437HCY ENCSR000BIW Signal bigWig H1 GABPA ENCSR000BIW signal 2 213 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d9a823a9-d633-4f51-aba2-823c599d4887/ENCFF437HCY.bigWig\ color 118,158,101\ longLabel H1 GABPA ENCSR000BIW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BIW Signal\ track wgEncodeReg4TfChip_ENCFF437HCY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF117VZZ ENCSR000DSW Peak bigBed 5 Astrocyte of the spinal cord H3K4me3 peak 4 213 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/0579b5df-1833-4f95-88d9-664cac9b6363/ENCFF117VZZ.bigBed\ color 255,0,0\ longLabel Astrocyte of the spinal cord H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSW Peak\ track wgEncodeReg4Epigenetics_ENCFF117VZZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF200EXX ENCSR136WGP + strand bigWig SK-N-DZ treated with dimethyl sulfoxide for 72 hours + strand total RNA-seq signal 2 213 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/9a2c8add-4e30-4be0-a143-4878b79ea9b4/ENCFF200EXX.bigWig\ color 155,155,18\ longLabel SK-N-DZ treated with dimethyl sulfoxide for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR136WGP + strand\ track wgEncodeReg4RnaSeq_ENCFF200EXX\ type bigWig\ visibility full\ encTfChipPkENCFF137BRA GM12878 ZNF687 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF687 in GM12878 from ENCODE 3 (ENCFF137BRA) 0 213 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF687 in GM12878 from ENCODE 3 (ENCFF137BRA)\ parent encTfChipPk off\ shortLabel GM12878 ZNF687\ subGroups cellType=GM12878 factor=ZNF687\ track encTfChipPkENCFF137BRA\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_fwd H9MelanocyticInduction_Day12Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward 0 213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_fwd H9MelanocyticInduction_Day12Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward 1 213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcfSignal HCF Sg bigWig 0 19295.8 HCF cardiac fibroblast DNaseI Signal from ENCODE 0 213 255 229 85 255 242 170 0 0 0 regulation 1 color 255,229,85\ longLabel HCF cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCF Sg\ subGroups view=c_Signal cellType=HCF treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfSignal\ type bigWig 0 19295.8\ bladderEp44L Bladder - Epithelial - Z0000044L bigWig Methylation Atlas: Bladder - Epithelial - Z0000044L 2 214 186 85 211 220 170 233 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bladderEp44L.bw\ color 186,85,211\ longLabel Methylation Atlas: Bladder - Epithelial - Z0000044L\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 214\ shortLabel Bladder - Epithelial - Z0000044L\ subGroups cellType=Bladder-Ep dataType=Replicate\ track bladderEp44L\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF423POG ENCFF423POG bigWig Middle frontal area 46, male adult (82 years): (5) CTCF, ENCFF423POG 2 214 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF423POG.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (82 years): (5) CTCF, ENCFF423POG\ maxHeightPixels 30\ parent CTCF_view off\ priority 109.4\ shortLabel ENCFF423POG\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__82_years_ biosampleType=tissue donor=ENCDO407UTA dataType=typeCtcf\ track ENCFF423POG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF451BLH ENCSR000BJA Peak bigBed 5 H1 EGR1 peaks 4 214 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/10b0a714-fe34-4a9e-bb55-1ff5f4ae276a/ENCFF451BLH.bigBed\ labelFields none\ longLabel H1 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF451BLH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF684KJG ENCSR000DSW Signal bigWig Astrocyte of the spinal cord H3K4me3 signal 2 214 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/fa43ba0c-135b-44f0-9543-063efe301e18/ENCFF684KJG.bigWig\ color 255,0,0\ longLabel Astrocyte of the spinal cord H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSW Signal\ track wgEncodeReg4Epigenetics_ENCFF684KJG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF386YHW ENCSR136WGP - strand bigWig SK-N-DZ treated with dimethyl sulfoxide for 72 hours - strand total RNA-seq signal 2 214 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/5732919a-f558-412f-8ad6-3927d4fb4443/ENCFF386YHW.bigWig\ color 155,155,18\ longLabel SK-N-DZ treated with dimethyl sulfoxide for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR136WGP - strand\ track wgEncodeReg4RnaSeq_ENCFF386YHW\ type bigWig\ visibility full\ encTfChipPkENCFF214NJL GM12878 ZSCAN29 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in GM12878 from ENCODE 3 (ENCFF214NJL) 0 214 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in GM12878 from ENCODE 3 (ENCFF214NJL)\ parent encTfChipPk off\ shortLabel GM12878 ZSCAN29\ subGroups cellType=GM12878 factor=ZSCAN29\ track encTfChipPkENCFF214NJL\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_rev H9MelanocyticInduction_Day12Br2- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse 0 214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_rev H9MelanocyticInduction_Day12Br2- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse 1 214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep2%20%28H9EB-2%20d12%29.CNhs12830.12730-135H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep2 (H9EB-2 d12)_CNhs12830_12730-135H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12730-135H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep2H9EB2D12_CNhs12830_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12730-135H3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcmSignal HCM Sg bigWig 0 14370.2 HCM cardiac myocyte DNaseI Signal from ENCODE 0 214 255 230 85 255 242 170 0 0 0 regulation 1 color 255,230,85\ longLabel HCM cardiac myocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCM Sg\ subGroups view=c_Signal cellType=HCM treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcmSignal\ type bigWig 0 14370.2\ bladderEp450 Bladder - Epithelial - Z00000450 bigWig Methylation Atlas: Bladder - Epithelial - Z00000450 2 215 186 85 211 220 170 233 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/bladderEp450.bw\ color 186,85,211\ longLabel Methylation Atlas: Bladder - Epithelial - Z00000450\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 215\ shortLabel Bladder - Epithelial - Z00000450\ subGroups cellType=Bladder-Ep dataType=Replicate\ track bladderEp450\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF653MQB ENCFF653MQB bigWig Middle frontal area 46, female adult (87 years): (5) CTCF, ENCFF653MQB 2 215 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF653MQB.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (87 years): (5) CTCF, ENCFF653MQB\ maxHeightPixels 30\ parent CTCF_view off\ priority 99.4\ shortLabel ENCFF653MQB\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO423GGP dataType=typeCtcf\ track ENCFF653MQB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF517ZBF ENCSR000BJA Signal bigWig H1 EGR1 ENCSR000BJA signal 2 215 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/d3d22fb7-10a2-4e3d-8ad2-87fc0f1bcfc2/ENCFF517ZBF.bigWig\ color 118,158,101\ longLabel H1 EGR1 ENCSR000BJA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJA Signal\ track wgEncodeReg4TfChip_ENCFF517ZBF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF821EWT ENCSR000DSY Peak bigBed 5 Astrocyte of the cerebellum H3K4me3 peak 4 215 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/c0546e29-2421-443d-b23b-65d043d55edf/ENCFF821EWT.bigBed\ color 255,0,0\ longLabel Astrocyte of the cerebellum H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSY Peak\ track wgEncodeReg4Epigenetics_ENCFF821EWT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF534EDO ENCSR138MMB + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 215 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/49f409d1-7ec2-41ca-9daa-17cd34917003/ENCFF534EDO.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR138MMB + strand\ track wgEncodeReg4RnaSeq_ENCFF534EDO\ type bigWig\ visibility full\ encTfChipPkENCFF260NAX GM12878 ZZZ3 narrowPeak Transcription Factor ChIP-seq Peaks of ZZZ3 in GM12878 from ENCODE 3 (ENCFF260NAX) 0 215 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel Transcription Factor ChIP-seq Peaks of ZZZ3 in GM12878 from ENCODE 3 (ENCFF260NAX)\ parent encTfChipPk off\ shortLabel GM12878 ZZZ3\ subGroups cellType=GM12878 factor=ZZZ3\ track encTfChipPkENCFF260NAX\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward 0 215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward 1 215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHpafSignal HPAF Sg bigWig 0 11225.6 HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE 0 215 255 232 85 255 243 170 0 0 0 regulation 1 color 255,232,85\ longLabel HPAF pulmonary artery fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HPAF Sg\ subGroups view=c_Signal cellType=HPAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHpafSignal\ type bigWig 0 11225.6\ wgEncodeRegDnaseUwAoafSignal AoAF Sg bigWig 0 10369.5 AoAF aorta fibroblast DNaseI Signal from ENCODE 0 216 255 236 85 255 245 170 0 0 0 regulation 1 color 255,236,85\ longLabel AoAF aorta fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AoAF Sg\ subGroups view=c_Signal cellType=AoAF treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwAoafSignal\ type bigWig 0 10369.5\ ENCFF250VKH ENCFF250VKH bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (5) CTCF, ENCFF250VKH 2 216 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF250VKH.bw\ color 0,176,240\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (5) CTCF, ENCFF250VKH\ maxHeightPixels 30\ parent CTCF_view off\ priority 79.4\ shortLabel ENCFF250VKH\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO448YMQ dataType=typeCtcf\ track ENCFF250VKH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF083VEI ENCSR000BJD Peak bigBed 5 GM12878 RXRA peaks 4 216 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0c66941b-8f04-4700-a7f0-282a43e46490/ENCFF083VEI.bigBed\ labelFields none\ longLabel GM12878 RXRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF083VEI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF630TBW ENCSR000DSY Signal bigWig Astrocyte of the cerebellum H3K4me3 signal 2 216 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/d04713db-221d-46f3-8194-8754b8fcb62d/ENCFF630TBW.bigWig\ color 255,0,0\ longLabel Astrocyte of the cerebellum H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSY Signal\ track wgEncodeReg4Epigenetics_ENCFF630TBW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF393XRH ENCSR138MMB - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 216 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/d10bd4e5-7d4e-41a7-a38e-b522c8e49b44/ENCFF393XRH.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR138MMB - strand\ track wgEncodeReg4RnaSeq_ENCFF393XRH\ type bigWig\ visibility full\ encTfChipPkENCFF987CQF GM12891 PAX5 narrowPeak Transcription Factor ChIP-seq Peaks of PAX5 in GM12891 from ENCODE 3 (ENCFF987CQF) 0 216 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PAX5 in GM12891 from ENCODE 3 (ENCFF987CQF)\ parent encTfChipPk off\ shortLabel GM12891 PAX5\ subGroups cellType=GM12891 factor=PAX5\ track encTfChipPkENCFF987CQF\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward 0 216 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_fwd H9MelanocyticInduction_Day12Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward 1 216 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ prostateEpMerged Prostate Epithelium Merged bigWig Methylation Atlas: Prostate Epithelium Merged Samples 2 216 153 50 204 204 152 229 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/prostateEpMerged.bw\ color 153,50,204\ longLabel Methylation Atlas: Prostate Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 216\ shortLabel Prostate Epithelium Merged\ subGroups cellType=Prostate-Ep dataType=Merged\ track prostateEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF992YXC ENCFF992YXC bigWig Middle frontal area 46, female adult (83 years): (5) CTCF, ENCFF992YXC 2 217 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF992YXC.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (83 years): (5) CTCF, ENCFF992YXC\ maxHeightPixels 30\ parent CTCF_view off\ priority 97.4\ shortLabel ENCFF992YXC\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__83_years_ biosampleType=tissue donor=ENCDO448ZXP dataType=typeCtcf\ track ENCFF992YXC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF870ANL ENCSR000BJD Signal bigWig GM12878 RXRA ENCSR000BJD signal 2 217 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b73685f7-a6c8-4225-8d49-c6380201b9e6/ENCFF870ANL.bigWig\ color 254,75,173\ longLabel GM12878 RXRA ENCSR000BJD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJD Signal\ track wgEncodeReg4TfChip_ENCFF870ANL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF511OCS ENCSR000DSZ Peak bigBed 5 Astrocyte of the cerebellum CTCF peak 4 217 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3a6f65e2-7610-46eb-8968-1be6fd1b1bee/ENCFF511OCS.bigBed\ color 0,176,240\ labelFields none\ longLabel Astrocyte of the cerebellum CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSZ Peak\ track wgEncodeReg4Epigenetics_ENCFF511OCS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF105TXB ENCSR140DCD + strand bigWig Ovary tissue female adult (46 years) + strand total RNA-seq signal 2 217 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/d9cea3fc-e97c-4c15-9411-bc4937056b73/ENCFF105TXB.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (46 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR140DCD + strand\ track wgEncodeReg4RnaSeq_ENCFF105TXB\ type bigWig\ visibility full\ encTfChipPkENCFF021HUZ GM12891 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12891 from ENCODE 3 (ENCFF021HUZ) 0 217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12891 from ENCODE 3 (ENCFF021HUZ)\ parent encTfChipPk off\ shortLabel GM12891 POLR2A\ subGroups cellType=GM12891 factor=POLR2A\ track encTfChipPkENCFF021HUZ\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse 0 217 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse 1 217 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcpepicSignal HCPEpiC Sg bigWig 0 13163.5 HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE 0 217 255 242 85 255 248 170 0 0 0 regulation 1 color 255,242,85\ longLabel HCPEpiC choroid plexus epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCPEpiC Sg\ subGroups view=c_Signal cellType=HCPEpiC treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHcpepicSignal\ type bigWig 0 13163.5\ prostEp0RV Prostate - Epithelial - Z000000RV bigWig Methylation Atlas: Prostate - Epithelial - Z000000RV 2 217 153 50 204 204 152 229 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/prostEp0RV.bw\ color 153,50,204\ longLabel Methylation Atlas: Prostate - Epithelial - Z000000RV\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 217\ shortLabel Prostate - Epithelial - Z000000RV\ subGroups cellType=Prostate-Ep dataType=Replicate\ track prostEp0RV\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF741DPN ENCFF741DPN bigWig Middle frontal area 46, female adult (84 years): (5) CTCF, ENCFF741DPN 2 218 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF741DPN.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (84 years): (5) CTCF, ENCFF741DPN\ maxHeightPixels 30\ parent CTCF_view off\ priority 98.4\ shortLabel ENCFF741DPN\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__84_years_ biosampleType=tissue donor=ENCDO461DJY dataType=typeCtcf\ track ENCFF741DPN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF766FEJ ENCSR000BJE Peak bigBed 5 GM12878 SIX5 peaks 4 218 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/aae5091a-01e6-412c-8d3f-b2ce9807d982/ENCFF766FEJ.bigBed\ labelFields none\ longLabel GM12878 SIX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF766FEJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF812BUV ENCSR000DSZ Signal bigWig Astrocyte of the cerebellum CTCF signal 2 218 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/9cfd1e80-928e-4e70-8dbb-560d8459e489/ENCFF812BUV.bigWig\ color 0,176,240\ longLabel Astrocyte of the cerebellum CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DSZ Signal\ track wgEncodeReg4Epigenetics_ENCFF812BUV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF628JXI ENCSR140DCD - strand bigWig Ovary tissue female adult (46 years) - strand total RNA-seq signal 2 218 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/3ddf70a9-8a68-4daf-9d41-3037859f528b/ENCFF628JXI.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (46 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR140DCD - strand\ track wgEncodeReg4RnaSeq_ENCFF628JXI\ type bigWig\ visibility full\ encTfChipPkENCFF113EFE GM12891 POU2F2 narrowPeak Transcription Factor ChIP-seq Peaks of POU2F2 in GM12891 from ENCODE 3 (ENCFF113EFE) 0 218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POU2F2 in GM12891 from ENCODE 3 (ENCFF113EFE)\ parent encTfChipPk off\ shortLabel GM12891 POU2F2\ subGroups cellType=GM12891 factor=POU2F2\ track encTfChipPkENCFF113EFE\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse 0 218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12995.12828-137A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12995_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12995_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_rev H9MelanocyticInduction_Day12Br3- bigWig H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse 1 218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day12%2c%20biol_rep3%20%28H9EB-3%20d12%29.CNhs12949.12828-137A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day12, biol_rep3 (H9EB-3 d12)_CNhs12949_12828-137A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12828-137A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay12BiolRep3H9EB3D12_CNhs12949_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12828-137A2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHpfSignal HPF Sg bigWig 0 11172 HPF pulmonary fibroblast DNaseI Signal from ENCODE 0 218 255 247 85 255 251 170 0 0 0 regulation 1 color 255,247,85\ longLabel HPF pulmonary fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HPF Sg\ subGroups view=c_Signal cellType=HPF treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwHpfSignal\ type bigWig 0 11172\ prostEp0S3 Prostate - Epithelial - Z000000S3 bigWig Methylation Atlas: Prostate - Epithelial - Z000000S3 2 218 153 50 204 204 152 229 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/prostEp0S3.bw\ color 153,50,204\ longLabel Methylation Atlas: Prostate - Epithelial - Z000000S3\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 218\ shortLabel Prostate - Epithelial - Z000000S3\ subGroups cellType=Prostate-Ep dataType=Replicate\ track prostEp0S3\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF548SBE ENCFF548SBE bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF548SBE 2 219 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF548SBE.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF548SBE\ maxHeightPixels 30\ parent CTCF_view off\ priority 87.4\ shortLabel ENCFF548SBE\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO471EKG dataType=typeCtcf\ track ENCFF548SBE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF308TWB ENCSR000BJE Signal bigWig GM12878 SIX5 ENCSR000BJE signal 2 219 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/9a378c1b-f2b3-43b7-a41a-31911ab32a6c/ENCFF308TWB.bigWig\ color 254,75,173\ longLabel GM12878 SIX5 ENCSR000BJE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJE Signal\ track wgEncodeReg4TfChip_ENCFF308TWB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF176ELT ENCSR000DTA Signal bigWig Brain microvascular endothelial cell CTCF signal 2 219 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/87a8cdd3-a853-4bf1-9d4c-c60aea31f7b7/ENCFF176ELT.bigWig\ color 0,176,240\ longLabel Brain microvascular endothelial cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTA Signal\ track wgEncodeReg4Epigenetics_ENCFF176ELT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF773IJT ENCSR146GSS + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 219 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/1ceb0a57-8ebf-479d-aa86-0c43784bb59e/ENCFF773IJT.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146GSS + strand\ track wgEncodeReg4RnaSeq_ENCFF773IJT\ type bigWig\ visibility full\ encTfChipPkENCFF744AGB GM12891 SPI1 narrowPeak Transcription Factor ChIP-seq Peaks of SPI1 in GM12891 from ENCODE 3 (ENCFF744AGB) 0 219 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SPI1 in GM12891 from ENCODE 3 (ENCFF744AGB)\ parent encTfChipPk off\ shortLabel GM12891 SPI1\ subGroups cellType=GM12891 factor=SPI1\ track encTfChipPkENCFF744AGB\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_fwd H9MelanocyticInduction_Day15Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward 0 219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_fwd H9MelanocyticInduction_Day15Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward 1 219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHconfSignal HConF Sg bigWig 0 8320.98 HConF conjunctival fibroblast DNaseI Signal from ENCODE 0 219 255 252 85 255 253 170 0 0 0 regulation 1 color 255,252,85\ longLabel HConF conjunctival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HConF Sg\ subGroups view=c_Signal cellType=HConF treatment=n_a tissue=eye cancer=unknown\ track wgEncodeRegDnaseUwHconfSignal\ type bigWig 0 8320.98\ prostEp45F Prostate - Epithelial - Z0000045F bigWig Methylation Atlas: Prostate - Epithelial - Z0000045F 2 219 153 50 204 204 152 229 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/prostEp45F.bw\ color 153,50,204\ longLabel Methylation Atlas: Prostate - Epithelial - Z0000045F\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 219\ shortLabel Prostate - Epithelial - Z0000045F\ subGroups cellType=Prostate-Ep dataType=Replicate\ track prostEp45F\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF816YAI ENCFF816YAI bigWig Middle frontal area 46, male adult (71 years): (5) CTCF, ENCFF816YAI 2 220 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF816YAI.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (71 years): (5) CTCF, ENCFF816YAI\ maxHeightPixels 30\ parent CTCF_view off\ priority 107.4\ shortLabel ENCFF816YAI\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__71_years_ biosampleType=tissue donor=ENCDO570AKP dataType=typeCtcf\ track ENCFF816YAI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF236EQD ENCSR000BJG Peak bigBed 5 HepG2 TCF12 peaks 4 220 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/152fa50b-bfc9-435f-ba91-0f1c14323ced/ENCFF236EQD.bigBed\ labelFields none\ longLabel HepG2 TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF236EQD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF760ODA ENCSR000DTC Peak bigBed 5 Brain microvascular endothelial cell H3K4me3 peak 4 220 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/dababe06-a704-4b32-bd7d-801c215dd4d8/ENCFF760ODA.bigBed\ color 255,0,0\ longLabel Brain microvascular endothelial cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTC Peak\ track wgEncodeReg4Epigenetics_ENCFF760ODA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF353SDE ENCSR146GSS - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 220 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/b0211e5d-3283-4923-bd70-506a396d598c/ENCFF353SDE.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146GSS - strand\ track wgEncodeReg4RnaSeq_ENCFF353SDE\ type bigWig\ visibility full\ encTfChipPkENCFF471NIK GM12891 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12891 from ENCODE 3 (ENCFF471NIK) 0 220 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12891 from ENCODE 3 (ENCFF471NIK)\ parent encTfChipPk off\ shortLabel GM12891 TAF1\ subGroups cellType=GM12891 factor=TAF1\ track encTfChipPkENCFF471NIK\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_rev H9MelanocyticInduction_Day15Br1- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse 0 220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_rev H9MelanocyticInduction_Day15Br1- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse 1 220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep1%20%28H9EB-1%20d15%29.CNhs12898.12633-134F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep1 (H9EB-1 d15)_CNhs12898_12633-134F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12633-134F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep1H9EB1D15_CNhs12898_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12633-134F5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHacSignal HAc Sg bigWig 0 10000.7 HAc cerebellar astrocyte DNaseI Signal from ENCODE 0 220 250 255 85 252 255 170 0 0 0 regulation 1 color 250,255,85\ longLabel HAc cerebellar astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HAc Sg\ subGroups view=c_Signal cellType=HAc treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHacSignal\ type bigWig 0 10000.7\ prostEp45G Prostate - Epithelial - Z0000045G bigWig Methylation Atlas: Prostate - Epithelial - Z0000045G 2 220 153 50 204 204 152 229 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/prostEp45G.bw\ color 153,50,204\ longLabel Methylation Atlas: Prostate - Epithelial - Z0000045G\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 220\ shortLabel Prostate - Epithelial - Z0000045G\ subGroups cellType=Prostate-Ep dataType=Replicate\ track prostEp45G\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF394BNS ENCFF394BNS bigWig Middle frontal area 46, male adult (83 years): (5) CTCF, ENCFF394BNS 2 221 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF394BNS.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (83 years): (5) CTCF, ENCFF394BNS\ maxHeightPixels 30\ parent CTCF_view off\ priority 111.4\ shortLabel ENCFF394BNS\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO592ZWW dataType=typeCtcf\ track ENCFF394BNS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF400IMT ENCSR000BJG Signal bigWig HepG2 TCF12 ENCSR000BJG signal 2 221 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/aad14925-8286-4c88-9e16-08cbd45d9327/ENCFF400IMT.bigWig\ color 137,152,82\ longLabel HepG2 TCF12 ENCSR000BJG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJG Signal\ track wgEncodeReg4TfChip_ENCFF400IMT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF559ALK ENCSR000DTC Signal bigWig Brain microvascular endothelial cell H3K4me3 signal 2 221 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/82b12da1-6514-42f4-9e6f-c1e6c0f2e07f/ENCFF559ALK.bigWig\ color 255,0,0\ longLabel Brain microvascular endothelial cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTC Signal\ track wgEncodeReg4Epigenetics_ENCFF559ALK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF477AQU ENCSR146LBD + strand bigWig Vagina tissue female adult (53 years) + strand total RNA-seq signal 2 221 255 101 174 255 178 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/dc04e3bf-5374-4fda-babc-7645090ca6e8/ENCFF477AQU.bigWig\ color 255,101,174\ longLabel Vagina tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146LBD + strand\ track wgEncodeReg4RnaSeq_ENCFF477AQU\ type bigWig\ visibility full\ fallopianEpMerged Fallopian Epithelium Merged bigWig Methylation Atlas: Fallopian Epithelium Merged Samples 2 221 218 112 214 236 183 234 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/fallopianEpMerged.bw\ color 218,112,214\ longLabel Methylation Atlas: Fallopian Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 221\ shortLabel Fallopian Epithelium Merged\ subGroups cellType=Fallopian-Ep dataType=Merged\ track fallopianEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF538VYU GM12891 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12891 from ENCODE 3 (ENCFF538VYU) 0 221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12891 from ENCODE 3 (ENCFF538VYU)\ parent encTfChipPk off\ shortLabel GM12891 YY1\ subGroups cellType=GM12891 factor=YY1\ track encTfChipPkENCFF538VYU\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_fwd H9MelanocyticInduction_Day15Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward 0 221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_fwd H9MelanocyticInduction_Day15Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward 1 221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHvmfSignal HVMF Sg bigWig 0 5956.46 HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE 0 221 242 255 85 248 255 170 0 0 0 regulation 1 color 242,255,85\ longLabel HVMF villous mesenchymal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HVMF Sg\ subGroups view=c_Signal cellType=HVMF treatment=n_a tissue=placenta cancer=normal\ track wgEncodeRegDnaseUwHvmfSignal\ type bigWig 0 5956.46\ ENCFF924IJQ ENCFF924IJQ bigWig Middle frontal area 46, female adult (79 years): (5) CTCF, ENCFF924IJQ 2 222 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF924IJQ.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (79 years): (5) CTCF, ENCFF924IJQ\ maxHeightPixels 30\ parent CTCF_view off\ priority 95.4\ shortLabel ENCFF924IJQ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__79_years_ biosampleType=tissue donor=ENCDO609ZOG dataType=typeCtcf\ track ENCFF924IJQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF490KVF ENCSR000BJH Peak bigBed 5 GM12891 PAX5 peaks 4 222 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/12e92bd1-b811-434a-b5cc-e7f443fc8409/ENCFF490KVF.bigBed\ labelFields none\ longLabel GM12891 PAX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF490KVF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF203YYG ENCSR000DTE Peak bigBed 5 Cardiac fibroblast H3K4me3 peak 4 222 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/54eb32af-2419-4ba6-b0c1-26db86340e27/ENCFF203YYG.bigBed\ color 255,0,0\ longLabel Cardiac fibroblast H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTE Peak\ track wgEncodeReg4Epigenetics_ENCFF203YYG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF533UMY ENCSR146LBD - strand bigWig Vagina tissue female adult (53 years) - strand total RNA-seq signal 2 222 255 101 174 255 178 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/89f2f9f1-f6fd-4bdf-a5b3-baf691a33a78/ENCFF533UMY.bigWig\ color 255,101,174\ longLabel Vagina tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146LBD - strand\ track wgEncodeReg4RnaSeq_ENCFF533UMY\ type bigWig\ visibility full\ fallopEp0Q7 Fallopian - Epithelial - Z000000Q7 bigWig Methylation Atlas: Fallopian - Epithelial - Z000000Q7 2 222 218 112 214 236 183 234 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/fallopEp0Q7.bw\ color 218,112,214\ longLabel Methylation Atlas: Fallopian - Epithelial - Z000000Q7\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 222\ shortLabel Fallopian - Epithelial - Z000000Q7\ subGroups cellType=Fallopian-Ep dataType=Replicate\ track fallopEp0Q7\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF403ZEO GM12892 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in GM12892 from ENCODE 3 (ENCFF403ZEO) 0 222 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in GM12892 from ENCODE 3 (ENCFF403ZEO)\ parent encTfChipPk off\ shortLabel GM12892 POLR2A\ subGroups cellType=GM12892 factor=POLR2A\ track encTfChipPkENCFF403ZEO\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_rev H9MelanocyticInduction_Day15Br2- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse 0 222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_rev H9MelanocyticInduction_Day15Br2- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse 1 222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep2%20%28H9EB-2%20d15%29.CNhs12831.12731-135H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep2 (H9EB-2 d15)_CNhs12831_12731-135H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12731-135H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep2H9EB2D15_CNhs12831_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12731-135H4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHipepicSignal HIPEpiC Sg bigWig 0 8028.81 HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE 0 222 236 255 85 245 255 170 0 0 0 regulation 1 color 236,255,85\ longLabel HIPEpiC iris pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HIPEpiC Sg\ subGroups view=c_Signal cellType=HIPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHipepicSignal\ type bigWig 0 8028.81\ wgEncodeRegDnaseUwBonemarrowmscSignal bonemarrow_MSC Sg bigWig 0 3047.47 bone_marrow_MSC bone marrow fibroblastoid DNaseI Signal from ENCODE 0 223 228 255 85 241 255 170 0 0 0 regulation 1 color 228,255,85\ longLabel bone_marrow_MSC bone marrow fibroblastoid DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel bonemarrow_MSC Sg\ subGroups view=c_Signal cellType=bone_marrow_MSC treatment=n_a tissue=bone_marrow cancer=normal\ track wgEncodeRegDnaseUwBonemarrowmscSignal\ type bigWig 0 3047.47\ ENCFF693AEK ENCFF693AEK bigWig Middle frontal area 46, male adult (78 years): (5) CTCF, ENCFF693AEK 2 223 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF693AEK.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (78 years): (5) CTCF, ENCFF693AEK\ maxHeightPixels 30\ parent CTCF_view off\ priority 108.4\ shortLabel ENCFF693AEK\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__78_years_ biosampleType=tissue donor=ENCDO623FPG dataType=typeCtcf\ track ENCFF693AEK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF009PMK ENCSR000BJH Signal bigWig GM12891 PAX5 ENCSR000BJH signal 2 223 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7da1dfd3-a3f7-4561-9b58-98a3b0fcb993/ENCFF009PMK.bigWig\ color 254,75,173\ longLabel GM12891 PAX5 ENCSR000BJH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJH Signal\ track wgEncodeReg4TfChip_ENCFF009PMK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF945XTN ENCSR000DTE Signal bigWig Cardiac fibroblast H3K4me3 signal 2 223 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/6f2a5a3d-cb62-4b4a-aee2-19934182f2b6/ENCFF945XTN.bigWig\ color 255,0,0\ longLabel Cardiac fibroblast H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTE Signal\ track wgEncodeReg4Epigenetics_ENCFF945XTN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF769QDV ENCSR146ZLV + strand bigWig Ovary tissue female adult (59 years) + strand total RNA-seq signal 2 223 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/f79bf07e-94f3-4ff3-99ef-b316ab2452b2/ENCFF769QDV.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146ZLV + strand\ track wgEncodeReg4RnaSeq_ENCFF769QDV\ type bigWig\ visibility full\ fallopEp0S9 Fallopian - Epithelial - Z000000S9 bigWig Methylation Atlas: Fallopian - Epithelial - Z000000S9 2 223 218 112 214 236 183 234 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/fallopEp0S9.bw\ color 218,112,214\ longLabel Methylation Atlas: Fallopian - Epithelial - Z000000S9\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 223\ shortLabel Fallopian - Epithelial - Z000000S9\ subGroups cellType=Fallopian-Ep dataType=Replicate\ track fallopEp0S9\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF033PLJ GM12892 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in GM12892 from ENCODE 3 (ENCFF033PLJ) 0 223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in GM12892 from ENCODE 3 (ENCFF033PLJ)\ parent encTfChipPk off\ shortLabel GM12892 TAF1\ subGroups cellType=GM12892 factor=TAF1\ track encTfChipPkENCFF033PLJ\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_fwd H9MelanocyticInduction_Day15Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward 0 223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_fwd H9MelanocyticInduction_Day15Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward 1 223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwAg10803Signal AG10803 Sg bigWig 0 19440.9 AG10803 skin fibroblast DNaseI Signal from ENCODE 0 224 220 255 85 237 255 170 0 0 0 regulation 1 color 220,255,85\ longLabel AG10803 skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG10803 Sg\ subGroups view=c_Signal cellType=AG10803 treatment=n_a tissue=skin cancer=unknown\ track wgEncodeRegDnaseUwAg10803Signal\ type bigWig 0 19440.9\ ENCFF374AEG ENCFF374AEG bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF374AEG 2 224 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF374AEG.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF374AEG\ maxHeightPixels 30\ parent CTCF_view off\ priority 85.4\ shortLabel ENCFF374AEG\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO634UMA dataType=typeCtcf\ track ENCFF374AEG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF635MSF ENCSR000BJI Peak bigBed 5 GM12892 PAX5 peaks 4 224 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1fc9d7e6-9dd0-4b10-ad7c-4c3be2a73721/ENCFF635MSF.bigBed\ labelFields none\ longLabel GM12892 PAX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF635MSF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF326EDY ENCSR000DTF Peak bigBed 5 Cardiac fibroblast female adult CTCF peak 4 224 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7d5dd8e7-89b3-445f-8116-61e8bd523238/ENCFF326EDY.bigBed\ color 0,176,240\ labelFields none\ longLabel Cardiac fibroblast female adult CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTF Peak\ track wgEncodeReg4Epigenetics_ENCFF326EDY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF968JGZ ENCSR146ZLV - strand bigWig Ovary tissue female adult (59 years) - strand total RNA-seq signal 2 224 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/29880525-8673-4870-b0e3-5d69c671a33c/ENCFF968JGZ.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146ZLV - strand\ track wgEncodeReg4RnaSeq_ENCFF968JGZ\ type bigWig\ visibility full\ fallopEp0UV Fallopian - Epithelial - Z000000UV bigWig Methylation Atlas: Fallopian - Epithelial - Z000000UV 2 224 218 112 214 236 183 234 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/fallopEp0UV.bw\ color 218,112,214\ longLabel Methylation Atlas: Fallopian - Epithelial - Z000000UV\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 224\ shortLabel Fallopian - Epithelial - Z000000UV\ subGroups cellType=Fallopian-Ep dataType=Replicate\ track fallopEp0UV\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF072IHJ GM12892 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in GM12892 from ENCODE 3 (ENCFF072IHJ) 0 224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in GM12892 from ENCODE 3 (ENCFF072IHJ)\ parent encTfChipPk off\ shortLabel GM12892 YY1\ subGroups cellType=GM12892 factor=YY1\ track encTfChipPkENCFF072IHJ\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_rev H9MelanocyticInduction_Day15Br3- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse 0 224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day15Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_rev H9MelanocyticInduction_Day15Br3- bigWig H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse 1 224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day15%2c%20biol_rep3%20%28H9EB-3%20d15%29.CNhs12912.12829-137A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day15, biol_rep3 (H9EB-3 d15)_CNhs12912_12829-137A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12829-137A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day15Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay15BiolRep3H9EB3D15_CNhs12912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12829-137A3\ urlLabel FANTOM5 Details:\ ENCFF800TZW ENCFF800TZW bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (5) CTCF, ENCFF800TZW 2 225 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF800TZW.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (5) CTCF, ENCFF800TZW\ maxHeightPixels 30\ parent CTCF_view off\ priority 75.4\ shortLabel ENCFF800TZW\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO637GUS dataType=typeCtcf\ track ENCFF800TZW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF547IEN ENCSR000BJI Signal bigWig GM12892 PAX5 ENCSR000BJI signal 2 225 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ddb1525e-5e9c-49db-b5a0-06eb71df2b89/ENCFF547IEN.bigWig\ color 254,75,173\ longLabel GM12892 PAX5 ENCSR000BJI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJI Signal\ track wgEncodeReg4TfChip_ENCFF547IEN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF330JYE ENCSR000DTF Signal bigWig Cardiac fibroblast female adult CTCF signal 2 225 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8d9a2c17-2906-44c7-8f1c-e776eb9c649e/ENCFF330JYE.bigWig\ color 0,176,240\ longLabel Cardiac fibroblast female adult CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTF Signal\ track wgEncodeReg4Epigenetics_ENCFF330JYE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF908IDY ENCSR146ZSP + strand bigWig HFFc6 + strand total RNA-seq signal 2 225 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/1b43f9eb-1d9b-40d0-b017-6a723a2c64f8/ENCFF908IDY.bigWig\ color 20,74,159\ longLabel HFFc6 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146ZSP + strand\ track wgEncodeReg4RnaSeq_ENCFF908IDY\ type bigWig\ visibility full\ encTfChipPkENCFF084FRB GM13977 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM13977 from ENCODE 3 (ENCFF084FRB) 0 225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM13977 from ENCODE 3 (ENCFF084FRB)\ parent encTfChipPk off\ shortLabel GM13977 CTCF\ subGroups cellType=GM13977 factor=CTCF\ track encTfChipPkENCFF084FRB\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_fwd H9MelanocyticInduction_Day18Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward 0 225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_fwd H9MelanocyticInduction_Day18Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward 1 225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmfSignal HMF Sg bigWig 0 12347.6 HMF mammary fibroblast DNaseI Signal from ENCODE 0 225 212 255 85 233 255 170 0 0 0 regulation 1 color 212,255,85\ longLabel HMF mammary fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMF Sg\ subGroups view=c_Signal cellType=HMF treatment=n_a tissue=breast cancer=unknown\ track wgEncodeRegDnaseUwHmfSignal\ type bigWig 0 12347.6\ ovaryEpMerged Ovary Epithelium Merged bigWig Methylation Atlas: Ovary Epithelium Merged Samples 2 225 221 160 221 238 207 238 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/ovaryEpMerged.bw\ color 221,160,221\ longLabel Methylation Atlas: Ovary Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 225\ shortLabel Ovary Epithelium Merged\ subGroups cellType=Ovary-Ep dataType=Merged\ track ovaryEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF729DUW ENCFF729DUW bigWig Middle frontal area 46, female adult (87 years): (5) CTCF, ENCFF729DUW 2 226 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF729DUW.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (87 years): (5) CTCF, ENCFF729DUW\ maxHeightPixels 30\ parent CTCF_view off\ priority 100.4\ shortLabel ENCFF729DUW\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO640RUC dataType=typeCtcf\ track ENCFF729DUW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF861MKH ENCSR000BJJ Peak bigBed 5 SK-N-SH REST peaks 4 226 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c5b92ad7-5c92-4992-863c-e8a3660e810a/ENCFF861MKH.bigBed\ labelFields none\ longLabel SK-N-SH REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF861MKH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF215TVV ENCSR000DTH Peak bigBed 5 Cardiac fibroblast female adult H3K4me3 peak 4 226 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/6305c2c4-f1c0-4944-92da-d7d15090d3b6/ENCFF215TVV.bigBed\ color 255,0,0\ longLabel Cardiac fibroblast female adult H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTH Peak\ track wgEncodeReg4Epigenetics_ENCFF215TVV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF920SOI ENCSR146ZSP - strand bigWig HFFc6 - strand total RNA-seq signal 2 226 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/ce5aa97d-bbd8-4870-9fe2-f1d38411333e/ENCFF920SOI.bigWig\ color 20,74,159\ longLabel HFFc6 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR146ZSP - strand\ track wgEncodeReg4RnaSeq_ENCFF920SOI\ type bigWig\ visibility full\ endomEp434 Endometrium - Epithelial - Z00000434 bigWig Methylation Atlas: Endometrium - Epithelial - Z00000434 2 226 221 160 221 238 207 238 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/endomEp434.bw\ color 221,160,221\ longLabel Methylation Atlas: Endometrium - Epithelial - Z00000434\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 226\ shortLabel Endometrium - Epithelial - Z00000434\ subGroups cellType=Ovary-Ep dataType=Replicate\ track endomEp434\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF419PTP GM20000 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM20000 from ENCODE 3 (ENCFF419PTP) 0 226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM20000 from ENCODE 3 (ENCFF419PTP)\ parent encTfChipPk off\ shortLabel GM20000 CTCF\ subGroups cellType=GM20000 factor=CTCF\ track encTfChipPkENCFF419PTP\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_rev H9MelanocyticInduction_Day18Br1- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse 0 226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_rev H9MelanocyticInduction_Day18Br1- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse 1 226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep1%20%28H9EB-1%20d18%29.CNhs12899.12634-134F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep1 (H9EB-1 d18)_CNhs12899_12634-134F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12634-134F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep1H9EB1D18_CNhs12899_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12634-134F6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHgfSignal HGF Sg bigWig 0 3410.39 HGF gingival fibroblast DNaseI Signal from ENCODE 0 226 204 255 85 229 255 170 0 0 0 regulation 1 color 204,255,85\ longLabel HGF gingival fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HGF Sg\ subGroups view=c_Signal cellType=HGF treatment=n_a tissue=periodontium cancer=normal\ track wgEncodeRegDnaseUwHgfSignal\ type bigWig 0 3410.39\ ENCFF111MOL ENCFF111MOL bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF111MOL 2 227 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF111MOL.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF111MOL\ maxHeightPixels 30\ parent CTCF_view off\ priority 91.4\ shortLabel ENCFF111MOL\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO660TGP dataType=typeCtcf\ track ENCFF111MOL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF724JQD ENCSR000BJJ Signal bigWig SK-N-SH REST ENCSR000BJJ signal 2 227 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1dc8fbc8-9b9d-4bf0-a3ea-d1dd44c069ab/ENCFF724JQD.bigWig\ color 155,155,18\ longLabel SK-N-SH REST ENCSR000BJJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJJ Signal\ track wgEncodeReg4TfChip_ENCFF724JQD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF453DCX ENCSR000DTH Signal bigWig Cardiac fibroblast female adult H3K4me3 signal 2 227 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/b853cfe5-b483-40fb-81b1-fa9a6026332c/ENCFF453DCX.bigWig\ color 255,0,0\ longLabel Cardiac fibroblast female adult H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTH Signal\ track wgEncodeReg4Epigenetics_ENCFF453DCX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF509OMC ENCSR149AHS + strand bigWig Posterior vena cava tissue female adult (59 years) + strand total RNA-seq signal 2 227 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/8560a490-421e-4d70-aa4c-cdeb68949302/ENCFF509OMC.bigWig\ color 255,37,41\ longLabel Posterior vena cava tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR149AHS + strand\ track wgEncodeReg4RnaSeq_ENCFF509OMC\ type bigWig\ visibility full\ endomEp435 Endometrium - Epithelial - Z00000435 bigWig Methylation Atlas: Endometrium - Epithelial - Z00000435 2 227 221 160 221 238 207 238 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/endomEp435.bw\ color 221,160,221\ longLabel Methylation Atlas: Endometrium - Epithelial - Z00000435\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 227\ shortLabel Endometrium - Epithelial - Z00000435\ subGroups cellType=Ovary-Ep dataType=Replicate\ track endomEp435\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF976SAN GM23248 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM23248 from ENCODE 3 (ENCFF976SAN) 0 227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM23248 from ENCODE 3 (ENCFF976SAN)\ parent encTfChipPk off\ shortLabel GM23248 EZH2\ subGroups cellType=GM23248 factor=EZH2\ track encTfChipPkENCFF976SAN\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_fwd H9MelanocyticInduction_Day18Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward 0 227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_fwd H9MelanocyticInduction_Day18Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward 1 227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhdfneoSignal NHDF-neo Sg bigWig 0 13455.2 NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE 0 227 198 255 85 226 255 170 0 0 0 regulation 1 color 198,255,85\ longLabel NHDF-neo dermal fibroblast, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NHDF-neo Sg\ subGroups view=c_Signal cellType=NHDF-neo treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfneoSignal\ type bigWig 0 13455.2\ ENCFF393UAO ENCFF393UAO bigWig Middle frontal area 46, male adult (86 years): (5) CTCF, ENCFF393UAO 2 228 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF393UAO.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (86 years): (5) CTCF, ENCFF393UAO\ maxHeightPixels 30\ parent CTCF_view off\ priority 113.4\ shortLabel ENCFF393UAO\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__86_years_ biosampleType=tissue donor=ENCDO666UNK dataType=typeCtcf\ track ENCFF393UAO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF467OEO ENCSR000BJK Peak bigBed 5 HepG2 GABPA peaks 4 228 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/504ead94-00d1-4672-b71b-867be865ef50/ENCFF467OEO.bigBed\ labelFields none\ longLabel HepG2 GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF467OEO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF728JSA ENCSR000DTI Peak bigBed 5 Cardiac muscle cell CTCF peak 4 228 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/767a788d-322a-41a0-8e1d-6c5993691539/ENCFF728JSA.bigBed\ color 0,176,240\ labelFields none\ longLabel Cardiac muscle cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTI Peak\ track wgEncodeReg4Epigenetics_ENCFF728JSA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF353AFV ENCSR149AHS - strand bigWig Posterior vena cava tissue female adult (59 years) - strand total RNA-seq signal 2 228 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/6444b0ec-dc72-4185-b5b3-03b1f4743469/ENCFF353AFV.bigWig\ color 255,37,41\ longLabel Posterior vena cava tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR149AHS - strand\ track wgEncodeReg4RnaSeq_ENCFF353AFV\ type bigWig\ visibility full\ endomEp43S Endometrium - Epithelial - Z0000043S bigWig Methylation Atlas: Endometrium - Epithelial - Z0000043S 2 228 221 160 221 238 207 238 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/endomEp43S.bw\ color 221,160,221\ longLabel Methylation Atlas: Endometrium - Epithelial - Z0000043S\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 228\ shortLabel Endometrium - Epithelial - Z0000043S\ subGroups cellType=Ovary-Ep dataType=Replicate\ track endomEp43S\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF322WKG GM23338 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF322WKG) 0 228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF322WKG)\ parent encTfChipPk off\ shortLabel GM23338 CTCF 1\ subGroups cellType=GM23338 factor=CTCF\ track encTfChipPkENCFF322WKG\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_rev H9MelanocyticInduction_Day18Br2- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse 0 228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_rev H9MelanocyticInduction_Day18Br2- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse 1 228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep2%20%28H9EB-2%20d18%29.CNhs12832.12732-135H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep2 (H9EB-2 d18)_CNhs12832_12732-135H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12732-135H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep2H9EB2D18_CNhs12832_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12732-135H5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHaepicSignal HAEpiC Sg bigWig 0 10858.1 HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE 0 228 189 255 85 222 255 170 0 0 0 regulation 1 color 189,255,85\ longLabel HAEpiC amniotic epithelium (AEC) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HAEpiC Sg\ subGroups view=c_Signal cellType=HAEpiC treatment=n_a tissue=embryo cancer=normal\ track wgEncodeRegDnaseUwHaepicSignal\ type bigWig 0 10858.1\ ENCFF294XWZ ENCFF294XWZ bigWig Middle frontal area 46, female adult (88 years): (5) CTCF, ENCFF294XWZ 2 229 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF294XWZ.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (88 years): (5) CTCF, ENCFF294XWZ\ maxHeightPixels 30\ parent CTCF_view off\ priority 101.4\ shortLabel ENCFF294XWZ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__88_years_ biosampleType=tissue donor=ENCDO669IVL dataType=typeCtcf\ track ENCFF294XWZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF279KCZ ENCSR000BJK Signal bigWig HepG2 GABPA ENCSR000BJK signal 2 229 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/25571e9a-4f8a-4c87-bf99-9c16cbec6d33/ENCFF279KCZ.bigWig\ color 137,152,82\ longLabel HepG2 GABPA ENCSR000BJK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJK Signal\ track wgEncodeReg4TfChip_ENCFF279KCZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF193CJN ENCSR000DTI Signal bigWig Cardiac muscle cell CTCF signal 2 229 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7c6e3cb8-02ae-4183-b282-abf7a0db3425/ENCFF193CJN.bigWig\ color 0,176,240\ longLabel Cardiac muscle cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTI Signal\ track wgEncodeReg4Epigenetics_ENCFF193CJN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF359ATD ENCSR150QJY + strand bigWig Subcutaneous adipose tissue tissue female adult (51 years) + strand total RNA-seq signal 2 229 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b11daa4a-ffeb-4b83-89f2-8051d9093dfa/ENCFF359ATD.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR150QJY + strand\ track wgEncodeReg4RnaSeq_ENCFF359ATD\ type bigWig\ visibility full\ encTfChipPkENCFF960XTR GM23338 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF960XTR) 0 229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in GM23338 from ENCODE 3 (ENCFF960XTR)\ parent encTfChipPk off\ shortLabel GM23338 CTCF 2\ subGroups cellType=GM23338 factor=CTCF\ track encTfChipPkENCFF960XTR\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_fwd H9MelanocyticInduction_Day18Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward 0 229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_fwd H9MelanocyticInduction_Day18Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward 1 229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ ovaryEp0QT Ovary - Epithelial - Z000000QT bigWig Methylation Atlas: Ovary - Epithelial - Z000000QT 2 229 221 160 221 238 207 238 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/ovaryEp0QT.bw\ color 221,160,221\ longLabel Methylation Atlas: Ovary - Epithelial - Z000000QT\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 229\ shortLabel Ovary - Epithelial - Z000000QT\ subGroups cellType=Ovary-Ep dataType=Replicate\ track ovaryEp0QT\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ wgEncodeRegDnaseUwSkmcSignal SKMC Sg bigWig 0 2130.04 SKMC skeletal muscle cell DNaseI Signal from ENCODE 0 229 182 255 85 218 255 170 0 0 0 regulation 1 color 182,255,85\ longLabel SKMC skeletal muscle cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SKMC Sg\ subGroups view=c_Signal cellType=SKMC treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwSkmcSignal\ type bigWig 0 2130.04\ dermalFibroMerged Dermal Fibroblasts Merged bigWig Methylation Atlas: Dermal Fibroblasts Merged Samples 2 230 245 222 179 250 238 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/dermalFibroMerged.bw\ color 245,222,179\ longLabel Methylation Atlas: Dermal Fibroblasts Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 230\ shortLabel Dermal Fibroblasts Merged\ subGroups cellType=Dermal-Fibro dataType=Merged\ track dermalFibroMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF968SXQ ENCFF968SXQ bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF968SXQ 2 230 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF968SXQ.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF968SXQ\ maxHeightPixels 30\ parent CTCF_view off\ priority 90.4\ shortLabel ENCFF968SXQ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO672KST dataType=typeCtcf\ track ENCFF968SXQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF800JSL ENCSR000BJL Peak bigBed 5 HepG2 REST peaks 4 230 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/42002f86-ce37-48a9-a5bc-2d85a1beb712/ENCFF800JSL.bigBed\ labelFields none\ longLabel HepG2 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF800JSL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF214RBF ENCSR000DTK Peak bigBed 5 Cardiac muscle cell H3K4me3 peak 4 230 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/140d5265-bee6-4d56-b4ec-e65400d67e23/ENCFF214RBF.bigBed\ color 255,0,0\ longLabel Cardiac muscle cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTK Peak\ track wgEncodeReg4Epigenetics_ENCFF214RBF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF541EUU ENCSR150QJY - strand bigWig Subcutaneous adipose tissue tissue female adult (51 years) - strand total RNA-seq signal 2 230 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/db58d3ad-3a40-4fb6-a037-40682d076894/ENCFF541EUU.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR150QJY - strand\ track wgEncodeReg4RnaSeq_ENCFF541EUU\ type bigWig\ visibility full\ encTfChipPkENCFF511AZU GM23338 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in GM23338 from ENCODE 3 (ENCFF511AZU) 0 230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ETS1 in GM23338 from ENCODE 3 (ENCFF511AZU)\ parent encTfChipPk off\ shortLabel GM23338 ETS1\ subGroups cellType=GM23338 factor=ETS1\ track encTfChipPkENCFF511AZU\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_rev H9MelanocyticInduction_Day18Br3- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse 0 230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day18Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_rev H9MelanocyticInduction_Day18Br3- bigWig H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse 1 230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day18%2c%20biol_rep3%20%28H9EB-3%20d18%29.CNhs12914.12830-137A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day18, biol_rep3 (H9EB-3 d18)_CNhs12914_12830-137A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12830-137A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day18Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay18BiolRep3H9EB3D18_CNhs12914_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12830-137A4\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHbvsmcSignal HBVSMC Sg bigWig 0 3766.42 HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE 0 230 176 255 85 215 255 170 0 0 0 regulation 1 color 176,255,85\ longLabel HBVSMC brain vascular smooth muscle DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HBVSMC Sg\ subGroups view=c_Signal cellType=HBVSMC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHbvsmcSignal\ type bigWig 0 3766.42\ wgEncodeRegDnaseUwAg04449Signal AG04449 Sg bigWig 0 20132.8 AG04449 fetal skin fibroblast DNaseI Signal from ENCODE 0 231 152 255 85 203 255 170 0 0 0 regulation 1 color 152,255,85\ longLabel AG04449 fetal skin fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG04449 Sg\ subGroups view=c_Signal cellType=AG04449 treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwAg04449Signal\ type bigWig 0 20132.8\ dermFibro423 Dermal - Fibroblasts - Z00000423 bigWig Methylation Atlas: Dermal - Fibroblasts - Z00000423 2 231 245 222 179 250 238 217 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/dermFibro423.bw\ color 245,222,179\ longLabel Methylation Atlas: Dermal - Fibroblasts - Z00000423\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 231\ shortLabel Dermal - Fibroblasts - Z00000423\ subGroups cellType=Dermal-Fibro dataType=Replicate\ track dermFibro423\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF341CQE ENCFF341CQE bigWig Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (5) CTCF, ENCFF341CQE 2 231 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF341CQE.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (5) CTCF, ENCFF341CQE\ maxHeightPixels 30\ parent CTCF_view on\ priority 92.4\ shortLabel ENCFF341CQE\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__89_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO697SWU dataType=typeCtcf\ track ENCFF341CQE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF829ZXF ENCSR000BJL Signal bigWig HepG2 REST ENCSR000BJL signal 2 231 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/cd73ffff-a496-4897-9ed8-6445412bfba1/ENCFF829ZXF.bigWig\ color 137,152,82\ longLabel HepG2 REST ENCSR000BJL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJL Signal\ track wgEncodeReg4TfChip_ENCFF829ZXF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF045KEG ENCSR000DTK Signal bigWig Cardiac muscle cell H3K4me3 signal 2 231 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/094c0d7c-cf23-4dfd-b9b8-0854f4029222/ENCFF045KEG.bigWig\ color 255,0,0\ longLabel Cardiac muscle cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTK Signal\ track wgEncodeReg4Epigenetics_ENCFF045KEG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF535NFF ENCSR151FXS + strand bigWig CD8-positive, alpha-beta T cell male adult (21 years) + strand total RNA-seq signal 2 231 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6a4a680e-cfe1-4020-bbca-d742f0fcb7fc/ENCFF535NFF.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta T cell male adult (21 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR151FXS + strand\ track wgEncodeReg4RnaSeq_ENCFF535NFF\ type bigWig\ visibility full\ encTfChipPkENCFF097WNJ GM23338 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in GM23338 from ENCODE 3 (ENCFF097WNJ) 0 231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in GM23338 from ENCODE 3 (ENCFF097WNJ)\ parent encTfChipPk off\ shortLabel GM23338 EZH2\ subGroups cellType=GM23338 factor=EZH2\ track encTfChipPkENCFF097WNJ\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_fwd H9MelanocyticInduction_Day21Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward 0 231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_fwd H9MelanocyticInduction_Day21Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward 1 231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwAg04450Signal AG04450 Sg bigWig 0 18229.7 AG04450 fetal lung fibroblast DNaseI Signal from ENCODE 0 232 144 255 85 199 255 170 0 0 0 regulation 1 color 144,255,85\ longLabel AG04450 fetal lung fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel AG04450 Sg\ subGroups view=c_Signal cellType=AG04450 treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwAg04450Signal\ type bigWig 0 18229.7\ ENCFF450HJC ENCFF450HJC bigWig Middle frontal area 46, female adult (89 years): (5) CTCF, ENCFF450HJC 2 232 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF450HJC.bw\ color 0,176,240\ longLabel Middle frontal area 46, female adult (89 years): (5) CTCF, ENCFF450HJC\ maxHeightPixels 30\ parent CTCF_view off\ priority 102.4\ shortLabel ENCFF450HJC\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_female_adult__89_years_ biosampleType=tissue donor=ENCDO707TUE dataType=typeCtcf\ track ENCFF450HJC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF718XAJ ENCSR000BJM Peak bigBed 5 HepG2 POLR2A peaks 4 232 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e0de88a8-9088-4ecb-a315-b03095918216/ENCFF718XAJ.bigBed\ labelFields none\ longLabel HepG2 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF718XAJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF407YNR ENCSR000DTL Peak bigBed 5 Choroid plexus epithelial cell CTCF peak 4 232 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/f343aa12-934b-4ee3-ab1c-77387646a9af/ENCFF407YNR.bigBed\ color 0,176,240\ labelFields none\ longLabel Choroid plexus epithelial cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTL Peak\ track wgEncodeReg4Epigenetics_ENCFF407YNR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF071JET ENCSR151FXS - strand bigWig CD8-positive, alpha-beta T cell male adult (21 years) - strand total RNA-seq signal 2 232 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/987620be-be9d-4452-abe5-ee482774c9d6/ENCFF071JET.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta T cell male adult (21 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR151FXS - strand\ track wgEncodeReg4RnaSeq_ENCFF071JET\ type bigWig\ visibility full\ epidKeratMerged Epidermal Keratinocytes Merged bigWig Methylation Atlas: Epidermal Keratinocytes Merged Samples 2 232 222 184 135 238 219 195 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/epidKeratMerged.bw\ color 222,184,135\ longLabel Methylation Atlas: Epidermal Keratinocytes Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 232\ shortLabel Epidermal Keratinocytes Merged\ subGroups cellType=Epid-Kerat dataType=Merged\ track epidKeratMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF621PFM GM23338 NANOG narrowPeak Transcription Factor ChIP-seq Peaks of NANOG in GM23338 from ENCODE 3 (ENCFF621PFM) 0 232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NANOG in GM23338 from ENCODE 3 (ENCFF621PFM)\ parent encTfChipPk off\ shortLabel GM23338 NANOG\ subGroups cellType=GM23338 factor=NANOG\ track encTfChipPkENCFF621PFM\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_rev H9MelanocyticInduction_Day21Br1- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse 0 232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_rev H9MelanocyticInduction_Day21Br1- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse 1 232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep1%20%28H9EB-1%20d21%29.CNhs12900.12635-134F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep1 (H9EB-1 d21)_CNhs12900_12635-134F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12635-134F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep1H9EB1D21_CNhs12900_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12635-134F7\ urlLabel FANTOM5 Details:\ ENCFF280OBE ENCFF280OBE bigWig Middle frontal area 46, male adult (83 years): (5) CTCF, ENCFF280OBE 2 233 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF280OBE.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (83 years): (5) CTCF, ENCFF280OBE\ maxHeightPixels 30\ parent CTCF_view off\ priority 110.4\ shortLabel ENCFF280OBE\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO736YJH dataType=typeCtcf\ track ENCFF280OBE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF473DMJ ENCSR000BJM Signal bigWig HepG2 POLR2A ENCSR000BJM signal 2 233 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/903ce17b-6a62-475e-83be-857d5ef1bb49/ENCFF473DMJ.bigWig\ color 137,152,82\ longLabel HepG2 POLR2A ENCSR000BJM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJM Signal\ track wgEncodeReg4TfChip_ENCFF473DMJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF438ZPS ENCSR000DTL Signal bigWig Choroid plexus epithelial cell CTCF signal 2 233 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/33c9fb5d-74da-4dc4-8f96-b4d461b417fc/ENCFF438ZPS.bigWig\ color 0,176,240\ longLabel Choroid plexus epithelial cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTL Signal\ track wgEncodeReg4Epigenetics_ENCFF438ZPS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF782HFV ENCSR151NGC + strand bigWig GM12878 + strand total RNA-seq signal 2 233 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/3aae5d89-0e0b-45d7-8b25-a60485dcaf07/ENCFF782HFV.bigWig\ color 254,75,173\ longLabel GM12878 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR151NGC + strand\ track wgEncodeReg4RnaSeq_ENCFF782HFV\ type bigWig\ visibility full\ epidKerat424 Epidermal - Keratinocytes - Z00000424 bigWig Methylation Atlas: Epidermal - Keratinocytes - Z00000424 2 233 222 184 135 238 219 195 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/epidKerat424.bw\ color 222,184,135\ longLabel Methylation Atlas: Epidermal - Keratinocytes - Z00000424\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 233\ shortLabel Epidermal - Keratinocytes - Z00000424\ subGroups cellType=Epid-Kerat dataType=Replicate\ track epidKerat424\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF904USP GM23338 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in GM23338 from ENCODE 3 (ENCFF904USP) 0 233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in GM23338 from ENCODE 3 (ENCFF904USP)\ parent encTfChipPk off\ shortLabel GM23338 REST\ subGroups cellType=GM23338 factor=REST\ track encTfChipPkENCFF904USP\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_fwd H9MelanocyticInduction_Day21Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward 0 233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_fwd H9MelanocyticInduction_Day21Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward 1 233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHahSignal HA-h Sg bigWig 0 10262.5 HA-h hippocampal astrocyte DNaseI Signal from ENCODE 0 233 122 255 85 188 255 170 0 0 0 regulation 1 color 122,255,85\ longLabel HA-h hippocampal astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HA-h Sg\ subGroups view=c_Signal cellType=HA-h treatment=n_a tissue=brain cancer=normal\ track wgEncodeRegDnaseUwHahSignal\ type bigWig 0 10262.5\ ENCFF433RNM ENCFF433RNM bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF433RNM 2 234 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF433RNM.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF433RNM\ maxHeightPixels 30\ parent CTCF_view off\ priority 88.4\ shortLabel ENCFF433RNM\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO739EFE dataType=typeCtcf\ track ENCFF433RNM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF961AVP ENCSR000BJN Peak bigBed 5 HepG2 TAF1 peaks 4 234 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/373a2438-68fe-47d0-bee8-7f2371c6fc1d/ENCFF961AVP.bigBed\ labelFields none\ longLabel HepG2 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF961AVP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF295PWT ENCSR000DTN Peak bigBed 5 Choroid plexus epithelial cell H3K4me3 peak 4 234 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/6caf8b07-8c43-4aea-a16b-1239a6dce977/ENCFF295PWT.bigBed\ color 255,0,0\ longLabel Choroid plexus epithelial cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTN Peak\ track wgEncodeReg4Epigenetics_ENCFF295PWT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF700SCB ENCSR151NGC - strand bigWig GM12878 - strand total RNA-seq signal 2 234 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/f9a53b6f-56da-4d7f-ae0b-b7c773e70746/ENCFF700SCB.bigWig\ color 254,75,173\ longLabel GM12878 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR151NGC - strand\ track wgEncodeReg4RnaSeq_ENCFF700SCB\ type bigWig\ visibility full\ gallbladderMerged Gallbladder Merged bigWig Methylation Atlas: Gallbladder Merged Samples 2 234 107 142 35 181 198 145 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gallbladderMerged.bw\ color 107,142,35\ longLabel Methylation Atlas: Gallbladder Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 234\ shortLabel Gallbladder Merged\ subGroups cellType=Gallbladder dataType=Merged\ track gallbladderMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF777DCR H1-hESC ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in H1-hESC from ENCODE 3 (ENCFF777DCR) 0 234 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ASH2L in H1-hESC from ENCODE 3 (ENCFF777DCR)\ parent encTfChipPk off\ shortLabel H1-hESC ASH2L\ subGroups cellType=H1-hESC factor=ASH2L\ track encTfChipPkENCFF777DCR\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_rev H9MelanocyticInduction_Day21Br2- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse 0 234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_rev H9MelanocyticInduction_Day21Br2- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse 1 234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep2%20%28H9EB-2%20d21%29.CNhs12833.12733-135H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep2 (H9EB-2 d21)_CNhs12833_12733-135H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12733-135H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep2H9EB2D21_CNhs12833_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12733-135H6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwM059jSignal M059J Sg bigWig 0 6527.58 M059J glioblastoma cell line DNaseI Signal from ENCODE 0 234 96 255 85 175 255 170 0 0 0 regulation 1 color 96,255,85\ longLabel M059J glioblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel M059J Sg\ subGroups view=c_Signal cellType=M059J treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwM059jSignal\ type bigWig 0 6527.58\ ENCFF695EYC ENCFF695EYC bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (5) CTCF, ENCFF695EYC 2 235 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF695EYC.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (5) CTCF, ENCFF695EYC\ maxHeightPixels 30\ parent CTCF_view off\ priority 72.4\ shortLabel ENCFF695EYC\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO830KFO dataType=typeCtcf\ track ENCFF695EYC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF284KMH ENCSR000BJN Signal bigWig HepG2 TAF1 ENCSR000BJN signal 2 235 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/975e5fc5-c117-4213-bc80-465444d1c261/ENCFF284KMH.bigWig\ color 137,152,82\ longLabel HepG2 TAF1 ENCSR000BJN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJN Signal\ track wgEncodeReg4TfChip_ENCFF284KMH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF738STL ENCSR000DTN Signal bigWig Choroid plexus epithelial cell H3K4me3 signal 2 235 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/a569e348-6ef4-4ba3-b8b9-6fc0b6044817/ENCFF738STL.bigWig\ color 255,0,0\ longLabel Choroid plexus epithelial cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTN Signal\ track wgEncodeReg4Epigenetics_ENCFF738STL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF969VXC ENCSR152FDX + strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days + strand total RNA-seq signal 2 235 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/4661c822-aa6d-43ab-8c16-098a9c5afa8c/ENCFF969VXC.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR152FDX + strand\ track wgEncodeReg4RnaSeq_ENCFF969VXC\ type bigWig\ visibility full\ gallbladEp432 Gallbladder - Epithelial - Z00000432 bigWig Methylation Atlas: Gallbladder - Epithelial - Z00000432 2 235 107 142 35 181 198 145 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/gallbladEp432.bw\ color 107,142,35\ longLabel Methylation Atlas: Gallbladder - Epithelial - Z00000432\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 235\ shortLabel Gallbladder - Epithelial - Z00000432\ subGroups cellType=Gallbladder dataType=Replicate\ track gallbladEp432\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ encTfChipPkENCFF487GLV H1-hESC ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in H1-hESC from ENCODE 3 (ENCFF487GLV) 0 235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in H1-hESC from ENCODE 3 (ENCFF487GLV)\ parent encTfChipPk off\ shortLabel H1-hESC ATF3\ subGroups cellType=H1-hESC factor=ATF3\ track encTfChipPkENCFF487GLV\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_fwd H9MelanocyticInduction_Day21Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward 0 235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_fwd H9MelanocyticInduction_Day21Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward 1 235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwRpmi7951Signal RPMI-7951 Sg bigWig 0 7339.21 RPMI-7951 melanoma cell line DNaseI Signal from ENCODE 0 235 85 255 90 170 255 172 0 0 0 regulation 1 color 85,255,90\ longLabel RPMI-7951 melanoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel RPMI-7951 Sg\ subGroups view=c_Signal cellType=RPMI-7951 treatment=n_a tissue=skin cancer=cancer\ track wgEncodeRegDnaseUwRpmi7951Signal\ type bigWig 0 7339.21\ colonFibroMerged Colon Fibroblasts Merged bigWig Methylation Atlas: Colon Fibroblasts Merged Samples 2 236 85 107 47 170 181 151 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonFibroMerged.bw\ color 85,107,47\ longLabel Methylation Atlas: Colon Fibroblasts Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 236\ shortLabel Colon Fibroblasts Merged\ subGroups cellType=Colon-Fibro dataType=Merged\ track colonFibroMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF884MZR ENCFF884MZR bigWig Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (5) CTCF, ENCFF884MZR 2 236 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF884MZR.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (5) CTCF, ENCFF884MZR\ maxHeightPixels 30\ parent CTCF_view off\ priority 81.4\ shortLabel ENCFF884MZR\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__83_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO832DBZ dataType=typeCtcf\ track ENCFF884MZR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF629OJO ENCSR000BJO Peak bigBed 5 Panc1 REST peaks 4 236 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/29f35588-c330-402e-a82d-1fc90a754e23/ENCFF629OJO.bigBed\ labelFields none\ longLabel Panc1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF629OJO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF209YMI ENCSR000DTO Peak bigBed 5 HCT116 CTCF peak 4 236 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/f2b8cb41-ec99-4d0d-96fa-3ae99114859a/ENCFF209YMI.bigBed\ color 0,176,240\ labelFields none\ longLabel HCT116 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTO Peak\ track wgEncodeReg4Epigenetics_ENCFF209YMI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF361WVC ENCSR152FDX - strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days - strand total RNA-seq signal 2 236 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/eca9f1a2-9872-4f14-bf61-9a05c91c5283/ENCFF361WVC.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR152FDX - strand\ track wgEncodeReg4RnaSeq_ENCFF361WVC\ type bigWig\ visibility full\ encTfChipPkENCFF851YHG H1-hESC BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in H1-hESC from ENCODE 3 (ENCFF851YHG) 0 236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BACH1 in H1-hESC from ENCODE 3 (ENCFF851YHG)\ parent encTfChipPk off\ shortLabel H1-hESC BACH1\ subGroups cellType=H1-hESC factor=BACH1\ track encTfChipPkENCFF851YHG\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_rev H9MelanocyticInduction_Day21Br3- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse 0 236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day21Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_rev H9MelanocyticInduction_Day21Br3- bigWig H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse 1 236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day21%2c%20biol_rep3%20%28H9EB-3%20d21%29.CNhs12915.12831-137A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day21, biol_rep3 (H9EB-3 d21)_CNhs12915_12831-137A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12831-137A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day21Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay21BiolRep3H9EB3D21_CNhs12915_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12831-137A5\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHaspSignal HA-sp Sg bigWig 0 8189.49 HA-sp spinal cord astrocyte DNaseI Signal from ENCODE 0 236 85 255 124 170 255 189 0 0 0 regulation 1 color 85,255,124\ longLabel HA-sp spinal cord astrocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HA-sp Sg\ subGroups view=c_Signal cellType=HA-sp treatment=n_a tissue=spinal_cord cancer=normal\ track wgEncodeRegDnaseUwHaspSignal\ type bigWig 0 8189.49\ colonFibro42A Colon - Fibroblasts - Z0000042A bigWig Methylation Atlas: Colon - Fibroblasts - Z0000042A 2 237 85 107 47 170 181 151 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonFibro42A.bw\ color 85,107,47\ longLabel Methylation Atlas: Colon - Fibroblasts - Z0000042A\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 237\ shortLabel Colon - Fibroblasts - Z0000042A\ subGroups cellType=Colon-Fibro dataType=Replicate\ track colonFibro42A\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF884XLS ENCFF884XLS bigWig Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (5) CTCF, ENCFF884XLS 2 237 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF884XLS.bw\ color 0,176,240\ longLabel Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (5) CTCF, ENCFF884XLS\ maxHeightPixels 30\ parent CTCF_view off\ priority 78.4\ shortLabel ENCFF884XLS\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__86_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO845GYA dataType=typeCtcf\ track ENCFF884XLS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF861MDR ENCSR000BJO Signal bigWig Panc1 REST ENCSR000BJO signal 2 237 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7984d159-3dd3-4db7-84be-1040b4d3ed5d/ENCFF861MDR.bigWig\ color 175,100,41\ longLabel Panc1 REST ENCSR000BJO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJO Signal\ track wgEncodeReg4TfChip_ENCFF861MDR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF388PVO ENCSR000DTO Signal bigWig HCT116 CTCF signal 2 237 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ac44078e-fa4e-445f-817b-2ea1fd56fd52/ENCFF388PVO.bigWig\ color 0,176,240\ longLabel HCT116 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTO Signal\ track wgEncodeReg4Epigenetics_ENCFF388PVO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF957WVH ENCSR154PNU + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 237 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/a4d9a431-133a-4b96-9fa3-448847395c9b/ENCFF957WVH.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR154PNU + strand\ track wgEncodeReg4RnaSeq_ENCFF957WVH\ type bigWig\ visibility full\ encTfChipPkENCFF533KIC H1-hESC BCL11A 1 narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF533KIC) 0 237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF533KIC)\ parent encTfChipPk off\ shortLabel H1-hESC BCL11A 1\ subGroups cellType=H1-hESC factor=BCL11A\ track encTfChipPkENCFF533KIC\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_fwd H9MelanocyticInduction_Day24Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward 0 237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_fwd H9MelanocyticInduction_Day24Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward 1 237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHcfaaSignal HCFaa Sg bigWig 0 3845.33 HCFaa cardiac fibroblast DNaseI Signal from ENCODE 0 237 85 255 150 170 255 202 0 0 0 regulation 1 color 85,255,150\ longLabel HCFaa cardiac fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HCFaa Sg\ subGroups view=c_Signal cellType=HCFaa treatment=n_a tissue=heart cancer=normal\ track wgEncodeRegDnaseUwHcfaaSignal\ type bigWig 0 3845.33\ colonFibro42C Colon - Fibroblasts - Z0000042C bigWig Methylation Atlas: Colon - Fibroblasts - Z0000042C 2 238 85 107 47 170 181 151 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/colonFibro42C.bw\ color 85,107,47\ longLabel Methylation Atlas: Colon - Fibroblasts - Z0000042C\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 238\ shortLabel Colon - Fibroblasts - Z0000042C\ subGroups cellType=Colon-Fibro dataType=Replicate\ track colonFibro42C\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF345GCX ENCFF345GCX bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (5) CTCF, ENCFF345GCX 2 238 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF345GCX.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (5) CTCF, ENCFF345GCX\ maxHeightPixels 30\ parent CTCF_view off\ priority 74.4\ shortLabel ENCFF345GCX\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO847KYQ dataType=typeCtcf\ track ENCFF345GCX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF668WMP ENCSR000BJP Peak bigBed 5 PFSK-1 REST peaks 4 238 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/01/2974951f-1cb8-461b-b21e-4269ca179f0b/ENCFF668WMP.bigBed\ labelFields none\ longLabel PFSK-1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF668WMP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF003SZD ENCSR000DTQ Peak bigBed 5 HCT116 H3K4me3 peak 4 238 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/889eb2b1-f32e-45d7-a1a5-55e14162095c/ENCFF003SZD.bigBed\ color 255,0,0\ longLabel HCT116 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTQ Peak\ track wgEncodeReg4Epigenetics_ENCFF003SZD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF712NWK ENCSR154PNU - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 238 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/91a1e999-f1b2-4863-a3bd-547a8613d89d/ENCFF712NWK.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR154PNU - strand\ track wgEncodeReg4RnaSeq_ENCFF712NWK\ type bigWig\ visibility full\ encTfChipPkENCFF087VWX H1-hESC BCL11A 2 narrowPeak Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF087VWX) 0 238 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BCL11A in H1-hESC from ENCODE 3 (ENCFF087VWX)\ parent encTfChipPk off\ shortLabel H1-hESC BCL11A 2\ subGroups cellType=H1-hESC factor=BCL11A\ track encTfChipPkENCFF087VWX\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_rev H9MelanocyticInduction_Day24Br1- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse 0 238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_rev H9MelanocyticInduction_Day24Br1- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse 1 238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep1%20%28H9EB-1%20d24%29.CNhs12901.12636-134F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep1 (H9EB-1 d24)_CNhs12901_12636-134F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12636-134F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep1H9EB1D24_CNhs12901_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12636-134F8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWi384ohtam20nm72hrSignal WI-38 40HTAM Sg bigWig 0 9068.99 WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE 0 238 85 255 171 170 255 213 0 0 0 regulation 1 color 85,255,171\ longLabel WI-38 embryonic lung fibroblast cell line (40HTAM) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel WI-38 40HTAM Sg\ subGroups view=c_Signal cellType=WI-38 treatment=OHTAM_20nM_72hr tissue=lung cancer=normal\ track wgEncodeRegDnaseUwWi384ohtam20nm72hrSignal\ type bigWig 0 9068.99\ ENCFF812RLY ENCFF812RLY bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (5) CTCF, ENCFF812RLY 2 239 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF812RLY.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (5) CTCF, ENCFF812RLY\ maxHeightPixels 30\ parent CTCF_view off\ priority 73.4\ shortLabel ENCFF812RLY\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO853VGZ dataType=typeCtcf\ track ENCFF812RLY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF877WDP ENCSR000BJP Signal bigWig PFSK-1 REST ENCSR000BJP signal 2 239 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/01/6aebc177-c691-48a8-8632-f33e8cb7eee2/ENCFF877WDP.bigWig\ color 155,155,18\ longLabel PFSK-1 REST ENCSR000BJP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJP Signal\ track wgEncodeReg4TfChip_ENCFF877WDP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF964OOU ENCSR000DTQ Signal bigWig HCT116 H3K4me3 signal 2 239 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/b51120e9-04f9-4079-98d4-473fe1d46b3d/ENCFF964OOU.bigWig\ color 255,0,0\ longLabel HCT116 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTQ Signal\ track wgEncodeReg4Epigenetics_ENCFF964OOU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF037HVL ENCSR158IHB + strand bigWig Dorsolateral prefrontal cortex tissue female adult (75 years) + strand total RNA-seq signal 2 239 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/be5dce6c-1564-4961-b623-5ec032ea8878/ENCFF037HVL.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (75 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq on\ shortLabel ENCSR158IHB + strand\ track wgEncodeReg4RnaSeq_ENCFF037HVL\ type bigWig\ visibility full\ encTfChipPkENCFF962YTC H1-hESC BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in H1-hESC from ENCODE 3 (ENCFF962YTC) 0 239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in H1-hESC from ENCODE 3 (ENCFF962YTC)\ parent encTfChipPk off\ shortLabel H1-hESC BRCA1\ subGroups cellType=H1-hESC factor=BRCA1\ track encTfChipPkENCFF962YTC\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_fwd H9MelanocyticInduction_Day24Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward 0 239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_fwd H9MelanocyticInduction_Day24Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward 1 239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhdfadSignal NHDF-Ad Sg bigWig 0 2200.64 NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE 0 239 85 255 180 170 255 217 0 0 0 regulation 1 color 85,255,180\ longLabel NHDF-Ad dermal fibroblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NHDF-Ad Sg\ subGroups view=c_Signal cellType=NHDF-Ad treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhdfadSignal\ type bigWig 0 2200.64\ thyroidEpMerged Thyroid Epithelium Merged bigWig Methylation Atlas: Thyroid Epithelium Merged Samples 2 239 72 61 139 163 158 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/thyroidEpMerged.bw\ color 72,61,139\ longLabel Methylation Atlas: Thyroid Epithelium Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 239\ shortLabel Thyroid Epithelium Merged\ subGroups cellType=Thyroid-Ep dataType=Merged\ track thyroidEpMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF457ZFQ ENCFF457ZFQ bigWig Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF457ZFQ 2 240 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF457ZFQ.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF457ZFQ\ maxHeightPixels 30\ parent CTCF_view off\ priority 93.4\ shortLabel ENCFF457ZFQ\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO877NVF dataType=typeCtcf\ track ENCFF457ZFQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF570NHK ENCSR000BJW Peak bigBed 5 H1 RXRA peaks 4 240 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/58087f1d-4296-4e2a-9bbf-4061d9bdc83b/ENCFF570NHK.bigBed\ labelFields none\ longLabel H1 RXRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF570NHK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF946GGT ENCSR000DTR Peak bigBed 5 Epithelial cell of esophagus CTCF peak 4 240 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/26702583-0be4-46c5-a804-faa763f6184a/ENCFF946GGT.bigBed\ color 0,176,240\ labelFields none\ longLabel Epithelial cell of esophagus CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTR Peak\ track wgEncodeReg4Epigenetics_ENCFF946GGT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF500BHN ENCSR158IHB - strand bigWig Dorsolateral prefrontal cortex tissue female adult (75 years) - strand total RNA-seq signal 2 240 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/1ba6bcbe-a191-4517-ab22-03e5d9a31695/ENCFF500BHN.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (75 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq on\ shortLabel ENCSR158IHB - strand\ track wgEncodeReg4RnaSeq_ENCFF500BHN\ type bigWig\ visibility full\ encTfChipPkENCFF549ODQ H1-hESC CHD1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF549ODQ) 0 240 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF549ODQ)\ parent encTfChipPk off\ shortLabel H1-hESC CHD1 1\ subGroups cellType=H1-hESC factor=CHD1\ track encTfChipPkENCFF549ODQ\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_rev H9MelanocyticInduction_Day24Br2- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse 0 240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_rev H9MelanocyticInduction_Day24Br2- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse 1 240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep2%20%28H9EB-2%20d24%29.CNhs12834.12734-135H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep2 (H9EB-2 d24)_CNhs12834_12734-135H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12734-135H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep2H9EB2D24_CNhs12834_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12734-135H7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHsmmSignal HSMM Sg bigWig 0 14177.3 HSMM skeletal muscle myoblast DNaseI Signal from ENCODE 0 240 85 255 190 170 255 222 0 0 0 regulation 1 color 85,255,190\ longLabel HSMM skeletal muscle myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HSMM Sg\ subGroups view=c_Signal cellType=HSMM treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmSignal\ type bigWig 0 14177.3\ thyroidEp42S Thyroid - Epithelial - Z0000042S bigWig Methylation Atlas: Thyroid - Epithelial - Z0000042S 2 240 72 61 139 163 158 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/thyroidEp42S.bw\ color 72,61,139\ longLabel Methylation Atlas: Thyroid - Epithelial - Z0000042S\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 240\ shortLabel Thyroid - Epithelial - Z0000042S\ subGroups cellType=Thyroid-Ep dataType=Replicate\ track thyroidEp42S\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF326PAG ENCFF326PAG bigWig Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (5) CTCF, ENCFF326PAG 2 241 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF326PAG.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (5) CTCF, ENCFF326PAG\ maxHeightPixels 30\ parent CTCF_view off\ priority 67.4\ shortLabel ENCFF326PAG\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__74_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO907CMO dataType=typeCtcf\ track ENCFF326PAG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF827JSM ENCSR000BJW Signal bigWig H1 RXRA ENCSR000BJW signal 2 241 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/4513418a-d17c-4293-941d-37258b939a70/ENCFF827JSM.bigWig\ color 118,158,101\ longLabel H1 RXRA ENCSR000BJW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJW Signal\ track wgEncodeReg4TfChip_ENCFF827JSM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF906XOP ENCSR000DTR Signal bigWig Epithelial cell of esophagus CTCF signal 2 241 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e577bcfe-27f5-4a0b-8165-65b89e00bd57/ENCFF906XOP.bigWig\ color 0,176,240\ longLabel Epithelial cell of esophagus CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTR Signal\ track wgEncodeReg4Epigenetics_ENCFF906XOP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF669TRH ENCSR158KFO + strand bigWig Omental fat pad tissue female adult (51 years) + strand total RNA-seq signal 2 241 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/11bd72b9-3905-4783-9320-122ba47b2a04/ENCFF669TRH.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR158KFO + strand\ track wgEncodeReg4RnaSeq_ENCFF669TRH\ type bigWig\ visibility full\ encTfChipPkENCFF806HXY H1-hESC CHD1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF806HXY) 0 241 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in H1-hESC from ENCODE 3 (ENCFF806HXY)\ parent encTfChipPk off\ shortLabel H1-hESC CHD1 2\ subGroups cellType=H1-hESC factor=CHD1\ track encTfChipPkENCFF806HXY\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_fwd H9MelanocyticInduction_Day24Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward 0 241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_fwd H9MelanocyticInduction_Day24Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward 1 241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwLhcnm2Signal LHCN-M2 Sg bigWig 0 16877.8 LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE 0 241 85 255 193 170 255 224 0 0 0 regulation 1 color 85,255,193\ longLabel LHCN-M2 skeletal myoblast DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel LHCN-M2 Sg\ subGroups view=c_Signal cellType=LHCN-M2 treatment=n_a tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Signal\ type bigWig 0 16877.8\ thyroidEp42T Thyroid - Epithelial - Z0000042T bigWig Methylation Atlas: Thyroid - Epithelial - Z0000042T 2 241 72 61 139 163 158 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/thyroidEp42T.bw\ color 72,61,139\ longLabel Methylation Atlas: Thyroid - Epithelial - Z0000042T\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 241\ shortLabel Thyroid - Epithelial - Z0000042T\ subGroups cellType=Thyroid-Ep dataType=Replicate\ track thyroidEp42T\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF409LLA ENCFF409LLA bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF409LLA 2 242 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF409LLA.bw\ color 0,176,240\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (5) CTCF, ENCFF409LLA\ maxHeightPixels 30\ parent CTCF_view off\ priority 84.4\ shortLabel ENCFF409LLA\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO915WZE dataType=typeCtcf\ track ENCFF409LLA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF123KAM ENCSR000BJX Peak bigBed 5 HepG2 SP1 peaks 4 242 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/23b50699-b5f8-4c4f-8412-b08c48064961/ENCFF123KAM.bigBed\ labelFields none\ longLabel HepG2 SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF123KAM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF713TIE ENCSR000DTT Peak bigBed 5 Epithelial cell of esophagus H3K4me3 peak 4 242 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/af727f3d-6cf1-402b-ba7c-d179aa5d2bbe/ENCFF713TIE.bigBed\ color 255,0,0\ longLabel Epithelial cell of esophagus H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTT Peak\ track wgEncodeReg4Epigenetics_ENCFF713TIE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF355JXD ENCSR158KFO - strand bigWig Omental fat pad tissue female adult (51 years) - strand total RNA-seq signal 2 242 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/3e4d6b88-688c-4fa6-9cb8-86235399d99d/ENCFF355JXD.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR158KFO - strand\ track wgEncodeReg4RnaSeq_ENCFF355JXD\ type bigWig\ visibility full\ encTfChipPkENCFF658SXI H1-hESC CHD7 narrowPeak Transcription Factor ChIP-seq Peaks of CHD7 in H1-hESC from ENCODE 3 (ENCFF658SXI) 0 242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD7 in H1-hESC from ENCODE 3 (ENCFF658SXI)\ parent encTfChipPk off\ shortLabel H1-hESC CHD7\ subGroups cellType=H1-hESC factor=CHD7\ track encTfChipPkENCFF658SXI\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_rev H9MelanocyticInduction_Day24Br3- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse 0 242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day24Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_rev H9MelanocyticInduction_Day24Br3- bigWig H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse 1 242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day24%2c%20biol_rep3%20%28H9EB-3%20d24%29.CNhs12916.12832-137A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day24, biol_rep3 (H9EB-3 d24)_CNhs12916_12832-137A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12832-137A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day24Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay24BiolRep3H9EB3D24_CNhs12916_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12832-137A6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwLhcnm2Diff4dSignal LHCN-M2 diff4d Sg bigWig 0 44051.9 LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE 0 242 85 255 198 170 255 226 0 0 0 regulation 1 color 85,255,198\ longLabel LHCN-M2 skeletal myoblast (diff 4d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel LHCN-M2 diff4d Sg\ subGroups view=c_Signal cellType=LHCN-M2 treatment=DIFF_4d tissue=muscle cancer=unknown\ track wgEncodeRegDnaseUwLhcnm2Diff4dSignal\ type bigWig 0 44051.9\ thyroidEp42U Thyroid - Epithelial - Z0000042U bigWig Methylation Atlas: Thyroid - Epithelial - Z0000042U 2 242 72 61 139 163 158 197 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/thyroidEp42U.bw\ color 72,61,139\ longLabel Methylation Atlas: Thyroid - Epithelial - Z0000042U\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 242\ shortLabel Thyroid - Epithelial - Z0000042U\ subGroups cellType=Thyroid-Ep dataType=Replicate\ track thyroidEp42U\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ boneOsteobMerged Bone Osteoblasts Merged bigWig Methylation Atlas: Bone Osteoblasts Merged Samples 2 243 188 143 143 221 199 199 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/boneOsteobMerged.bw\ color 188,143,143\ longLabel Methylation Atlas: Bone Osteoblasts Merged Samples\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 243\ shortLabel Bone Osteoblasts Merged\ subGroups cellType=Bone-Osteob dataType=Merged\ track boneOsteobMerged\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF754BJX ENCFF754BJX bigWig Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (5) CTCF, ENCFF754BJX 2 243 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF754BJX.bw\ color 0,176,240\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (5) CTCF, ENCFF754BJX\ maxHeightPixels 30\ parent CTCF_view off\ priority 70.4\ shortLabel ENCFF754BJX\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__86_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO997SGX dataType=typeCtcf\ track ENCFF754BJX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF956IGM ENCSR000BJX Signal bigWig HepG2 SP1 ENCSR000BJX signal 2 243 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/40496cf2-1142-47fd-b8f7-4cfa874b17e8/ENCFF956IGM.bigWig\ color 137,152,82\ longLabel HepG2 SP1 ENCSR000BJX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJX Signal\ track wgEncodeReg4TfChip_ENCFF956IGM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF541YOS ENCSR000DTT Signal bigWig Epithelial cell of esophagus H3K4me3 signal 2 243 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/67b6d6a0-974a-4f88-a90d-a88b5acca96f/ENCFF541YOS.bigWig\ color 255,0,0\ longLabel Epithelial cell of esophagus H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTT Signal\ track wgEncodeReg4Epigenetics_ENCFF541YOS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF766TPR ENCSR158VWD + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 243 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/1df54530-1bb2-462f-b3ed-0e24f8702d42/ENCFF766TPR.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR158VWD + strand\ track wgEncodeReg4RnaSeq_ENCFF766TPR\ type bigWig\ visibility full\ encTfChipPkENCFF368LWM H1-hESC CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF368LWM) 0 243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF368LWM)\ parent encTfChipPk on\ shortLabel H1-hESC CTCF 1\ subGroups cellType=H1-hESC factor=CTCF\ track encTfChipPkENCFF368LWM\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_fwd H9MelanocyticInduction_Day27Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward 0 243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_fwd H9MelanocyticInduction_Day27Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward 1 243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHsmmtubeSignal HSMMtube Sg bigWig 0 14719.7 HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE 0 243 85 255 204 170 255 229 0 0 0 regulation 1 color 85,255,204\ longLabel HSMMtube skeletal muscle myotube DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HSMMtube Sg\ subGroups view=c_Signal cellType=HSMMtube treatment=n_a tissue=muscle cancer=normal\ track wgEncodeRegDnaseUwHsmmtubeSignal\ type bigWig 0 14719.7\ boneOsteob42Z Bone - Osteoblasts - Z0000042Z bigWig Methylation Atlas: Bone - Osteoblasts - Z0000042Z 2 244 188 143 143 221 199 199 0 0 0 regulation 0 alwaysZero on\ autoScale off\ bigDataUrl /gbdb/hg38/dnaMethylationAtlas/boneOsteob42Z.bw\ color 188,143,143\ longLabel Methylation Atlas: Bone - Osteoblasts - Z0000042Z\ maxHeightPixels 100:70:5\ parent humanMethylationAtlasSignals off\ priority 244\ shortLabel Bone - Osteoblasts - Z0000042Z\ subGroups cellType=Bone-Osteob dataType=Replicate\ track boneOsteob42Z\ type bigWig\ viewLimits 0:1\ windowingFunction mean\ ENCFF496PUD ENCFF496PUD bigWig Middle frontal area 46, male adult (84 years): (5) CTCF, ENCFF496PUD 2 244 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF496PUD.bw\ color 0,176,240\ longLabel Middle frontal area 46, male adult (84 years): (5) CTCF, ENCFF496PUD\ maxHeightPixels 30\ parent CTCF_view off\ priority 112.4\ shortLabel ENCFF496PUD\ subGroups organ=brain view=CTCF_view simpleBiosample=middle_frontal_area_46-_male_adult__84_years_ biosampleType=tissue donor=ENCDO999WDR dataType=typeCtcf\ track ENCFF496PUD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF358BXK ENCSR000BJY Peak bigBed 5 GM12878 ATF3 peaks 4 244 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/645c3a35-897b-400e-aef2-5c626820b7c1/ENCFF358BXK.bigBed\ labelFields none\ longLabel GM12878 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF358BXK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF904SKZ ENCSR000DTU Peak bigBed 5 HEK293 H3K4me3 peak 4 244 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/3ab850f5-7fcd-4661-8c18-051b9eb37304/ENCFF904SKZ.bigBed\ color 255,0,0\ longLabel HEK293 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTU Peak\ track wgEncodeReg4Epigenetics_ENCFF904SKZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF977WWQ ENCSR158VWD - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 244 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/f4313765-0a79-416a-9f90-a75fb358d2e9/ENCFF977WWQ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR158VWD - strand\ track wgEncodeReg4RnaSeq_ENCFF977WWQ\ type bigWig\ visibility full\ encTfChipPkENCFF821AQO H1-hESC CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF821AQO) 0 244 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in H1-hESC from ENCODE 3 (ENCFF821AQO)\ parent encTfChipPk off\ shortLabel H1-hESC CTCF 2\ subGroups cellType=H1-hESC factor=CTCF\ track encTfChipPkENCFF821AQO\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_rev H9MelanocyticInduction_Day27Br1- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse 0 244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_rev H9MelanocyticInduction_Day27Br1- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse 1 244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep1%20%28H9EB-1%20d27%29.CNhs12902.12637-134F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep1 (H9EB-1 d27)_CNhs12902_12637-134F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12637-134F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep1H9EB1D27_CNhs12902_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12637-134F9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHuvecSignal HUVEC Sg bigWig 0 6744.03 HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE 0 244 85 255 215 170 255 235 0 0 0 regulation 1 color 85,255,215\ longLabel HUVEC umbilical vein endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HUVEC Sg\ subGroups view=c_Signal cellType=HUVEC treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHuvecSignal\ type bigWig 0 6744.03\ ENCFF662LGI ENCFF662LGI bigWig MCF-7: (5) CTCF, ENCFF662LGI 2 245 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF662LGI.bw\ color 0,176,240\ longLabel MCF-7: (5) CTCF, ENCFF662LGI\ maxHeightPixels 30\ parent CTCF_view off\ priority 65.4\ shortLabel ENCFF662LGI\ subGroups organ=breast view=CTCF_view simpleBiosample=MCF-7 biosampleType=cell_line donor=ENCDO000AAE dataType=typeCtcf\ track ENCFF662LGI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF243XPP ENCSR000BJY Signal bigWig GM12878 ATF3 ENCSR000BJY signal 2 245 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/2bb74b5b-928a-4dfc-8672-c277950f35df/ENCFF243XPP.bigWig\ color 254,75,173\ longLabel GM12878 ATF3 ENCSR000BJY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJY Signal\ track wgEncodeReg4TfChip_ENCFF243XPP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF439DDQ ENCSR000DTU Signal bigWig HEK293 H3K4me3 signal 2 245 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/37134dc0-1f6e-4e3a-8d33-0b069c0f5fa5/ENCFF439DDQ.bigWig\ color 255,0,0\ longLabel HEK293 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTU Signal\ track wgEncodeReg4Epigenetics_ENCFF439DDQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF861QIF ENCSR162SPJ + strand bigWig Dorsolateral prefrontal cortex tissue female adult (77 years) + strand total RNA-seq signal 2 245 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/e670b8b7-97b5-4964-bf85-153fdba68f7b/ENCFF861QIF.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (77 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR162SPJ + strand\ track wgEncodeReg4RnaSeq_ENCFF861QIF\ type bigWig\ visibility full\ encTfChipPkENCFF477ANT H1-hESC EGR1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in H1-hESC from ENCODE 3 (ENCFF477ANT) 0 245 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in H1-hESC from ENCODE 3 (ENCFF477ANT)\ parent encTfChipPk off\ shortLabel H1-hESC EGR1\ subGroups cellType=H1-hESC factor=EGR1\ track encTfChipPkENCFF477ANT\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_fwd H9MelanocyticInduction_Day27Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward 0 245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_fwd H9MelanocyticInduction_Day27Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward 1 245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmveclblSignal HMVEC-LBl Sg bigWig 0 2898.86 HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE 0 245 85 255 220 170 255 237 0 0 0 regulation 1 color 85,255,220\ longLabel HMVEC-LBl lung microvascular epithelium. blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-LBl Sg\ subGroups view=c_Signal cellType=HMVEC-LBl treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmveclblSignal\ type bigWig 0 2898.86\ ENCFF271PWB ENCFF271PWB bigWig Breast epithelium, female adult (51 years): (5) CTCF, ENCFF271PWB 2 246 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF271PWB.bw\ color 0,176,240\ longLabel Breast epithelium, female adult (51 years): (5) CTCF, ENCFF271PWB\ maxHeightPixels 30\ parent CTCF_view off\ priority 17.4\ shortLabel ENCFF271PWB\ subGroups organ=breast view=CTCF_view simpleBiosample=breast_epithelium-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF271PWB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF306JRM ENCSR000BJZ Peak bigBed 5 GM12878 BCLAF1 peaks 4 246 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/239772fa-a0ce-4e60-ae1b-fdac6f39d173/ENCFF306JRM.bigBed\ labelFields none\ longLabel GM12878 BCLAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF306JRM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF498RMM ENCSR000DTW Peak bigBed 5 HEK293 CTCF peak 4 246 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/81eb42a1-acc8-4f04-9b9f-fbfbc900d2dc/ENCFF498RMM.bigBed\ color 0,176,240\ labelFields none\ longLabel HEK293 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTW Peak\ track wgEncodeReg4Epigenetics_ENCFF498RMM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF938TXU ENCSR162SPJ - strand bigWig Dorsolateral prefrontal cortex tissue female adult (77 years) - strand total RNA-seq signal 2 246 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/0a2bae78-218e-4185-aed3-dfa1f387b38b/ENCFF938TXU.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (77 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR162SPJ - strand\ track wgEncodeReg4RnaSeq_ENCFF938TXU\ type bigWig\ visibility full\ encTfChipPkENCFF834UVX H1-hESC EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF834UVX) 0 246 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF834UVX)\ parent encTfChipPk off\ shortLabel H1-hESC EP300 1\ subGroups cellType=H1-hESC factor=EP300\ track encTfChipPkENCFF834UVX\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_rev H9MelanocyticInduction_Day27Br2- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse 0 246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_rev H9MelanocyticInduction_Day27Br2- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse 1 246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep2%20%28H9EB-2%20d27%29.CNhs12835.12735-135H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep2 (H9EB-2 d27)_CNhs12835_12735-135H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12735-135H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep2H9EB2D27_CNhs12835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12735-135H8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdbladSignal HMVEC-dBl-Ad Sg bigWig 0 6571.28 HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE 0 246 85 255 224 170 255 239 0 0 0 regulation 1 color 85,255,224\ longLabel HMVEC-dBl-Ad dermal MV endothelial cell, blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dBl-Ad Sg\ subGroups view=c_Signal cellType=HMVEC-dBl-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdbladSignal\ type bigWig 0 6571.28\ ENCFF044ORH ENCFF044ORH bigWig Chondrocyte, female embryo (5 days): (5) CTCF, ENCFF044ORH 2 247 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF044ORH.bw\ color 0,176,240\ longLabel Chondrocyte, female embryo (5 days): (5) CTCF, ENCFF044ORH\ maxHeightPixels 30\ parent CTCF_view off\ priority 21.4\ shortLabel ENCFF044ORH\ subGroups organ=connective_tissue view=CTCF_view simpleBiosample=chondrocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF044ORH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF225WFX ENCSR000BJZ Signal bigWig GM12878 BCLAF1 ENCSR000BJZ signal 2 247 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/c4bc8ccf-ae57-46d9-8dbf-23a47afd3a28/ENCFF225WFX.bigWig\ color 254,75,173\ longLabel GM12878 BCLAF1 ENCSR000BJZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BJZ Signal\ track wgEncodeReg4TfChip_ENCFF225WFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF128UTY ENCSR000DTW Signal bigWig HEK293 CTCF signal 2 247 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/38da0b71-7ebb-4706-beeb-8ce20680e102/ENCFF128UTY.bigWig\ color 0,176,240\ longLabel HEK293 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DTW Signal\ track wgEncodeReg4Epigenetics_ENCFF128UTY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF448PWM ENCSR164OCT + strand bigWig NCI-H460 + strand total RNA-seq signal 2 247 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/405a326a-4b68-4dcd-9412-fe72a8d8a0ec/ENCFF448PWM.bigWig\ color 130,163,45\ longLabel NCI-H460 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR164OCT + strand\ track wgEncodeReg4RnaSeq_ENCFF448PWM\ type bigWig\ visibility full\ encTfChipPkENCFF483HNU H1-hESC EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF483HNU) 0 247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in H1-hESC from ENCODE 3 (ENCFF483HNU)\ parent encTfChipPk off\ shortLabel H1-hESC EP300 2\ subGroups cellType=H1-hESC factor=EP300\ track encTfChipPkENCFF483HNU\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_fwd H9MelanocyticInduction_Day27Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward 0 247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_fwd H9MelanocyticInduction_Day27Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward 1 247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdlyneoSignal HMVEC-dLy-Neo Sg bigWig 0 9237.62 HMVEC-dLy-Neo dermal MV end cell, neonate lymph DNaseI Signal from ENCODE 0 247 85 255 226 170 255 240 0 0 0 regulation 1 color 85,255,226\ longLabel HMVEC-dLy-Neo dermal MV end cell, neonate lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dLy-Neo Sg\ subGroups view=c_Signal cellType=HMVEC-dLy-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyneoSignal\ type bigWig 0 9237.62\ ENCFF332TNJ ENCFF332TNJ bigWig H1: (5) CTCF, ENCFF332TNJ 2 248 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF332TNJ.bw\ color 0,176,240\ longLabel H1: (5) CTCF, ENCFF332TNJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 37.4\ shortLabel ENCFF332TNJ\ subGroups organ=embryo view=CTCF_view simpleBiosample=H1 biosampleType=cell_line donor=ENCDO000AAW dataType=typeCtcf\ track ENCFF332TNJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF019FEB ENCSR000BKA Peak bigBed 5 GM12878 ETS1 peaks 4 248 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/7a3fa347-b1ca-45c7-ab14-720ee72596be/ENCFF019FEB.bigBed\ labelFields none\ longLabel GM12878 ETS1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF019FEB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF002LNC ENCSR000DUA Peak bigBed 5 HeLa-S3 G1b phase H3K4me3 peak 4 248 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/7baae64c-c0f1-4764-a0cc-2eb4967f45ea/ENCFF002LNC.bigBed\ color 255,0,0\ longLabel HeLa-S3 G1b phase H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUA Peak\ track wgEncodeReg4Epigenetics_ENCFF002LNC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF289QYR ENCSR164OCT - strand bigWig NCI-H460 - strand total RNA-seq signal 2 248 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/10b39191-fb85-4c87-a598-6d6aeec0a473/ENCFF289QYR.bigWig\ color 130,163,45\ longLabel NCI-H460 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR164OCT - strand\ track wgEncodeReg4RnaSeq_ENCFF289QYR\ type bigWig\ visibility full\ encTfChipPkENCFF063OKB H1-hESC FOSL1 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL1 in H1-hESC from ENCODE 3 (ENCFF063OKB) 0 248 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOSL1 in H1-hESC from ENCODE 3 (ENCFF063OKB)\ parent encTfChipPk off\ shortLabel H1-hESC FOSL1\ subGroups cellType=H1-hESC factor=FOSL1\ track encTfChipPkENCFF063OKB\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_rev H9MelanocyticInduction_Day27Br3- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse 0 248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day27Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_rev H9MelanocyticInduction_Day27Br3- bigWig H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse 1 248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day27%2c%20biol_rep3%20%28H9EB-3%20d27%29.CNhs12917.12833-137A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day27, biol_rep3 (H9EB-3 d27)_CNhs12917_12833-137A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12833-137A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day27Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay27BiolRep3H9EB3D27_CNhs12917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12833-137A7\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdblneoSignal HMVEC-dBl-Neo Sg bigWig 0 6275.08 HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE 0 248 85 255 229 170 255 242 0 0 0 regulation 1 color 85,255,229\ longLabel HMVEC-dBl-Neo dermal MV endo cell, neonate blood DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dBl-Neo Sg\ subGroups view=c_Signal cellType=HMVEC-dBl-Neo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdblneoSignal\ type bigWig 0 6275.08\ ENCFF963CHU ENCFF963CHU bigWig H9: (5) CTCF, ENCFF963CHU 2 249 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF963CHU.bw\ color 0,176,240\ longLabel H9: (5) CTCF, ENCFF963CHU\ maxHeightPixels 30\ parent CTCF_view off\ priority 38.4\ shortLabel ENCFF963CHU\ subGroups organ=embryo view=CTCF_view simpleBiosample=H9 biosampleType=cell_line donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF963CHU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF065YMX ENCSR000BKA Signal bigWig GM12878 ETS1 ENCSR000BKA signal 2 249 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/b0da6e44-b54e-40f8-a89b-e9c382ce44a7/ENCFF065YMX.bigWig\ color 254,75,173\ longLabel GM12878 ETS1 ENCSR000BKA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKA Signal\ track wgEncodeReg4TfChip_ENCFF065YMX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF728IVS ENCSR000DUA Signal bigWig HeLa-S3 G1b phase H3K4me3 signal 2 249 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/ec88dda0-726e-49fd-97f9-8a84f5373411/ENCFF728IVS.bigWig\ color 255,0,0\ longLabel HeLa-S3 G1b phase H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUA Signal\ track wgEncodeReg4Epigenetics_ENCFF728IVS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF013IKJ ENCSR165QTZ + strand bigWig Pancreas tissue female adult (61 years) + strand total RNA-seq signal 2 249 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/34e38285-e152-419d-9951-572be1331988/ENCFF013IKJ.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR165QTZ + strand\ track wgEncodeReg4RnaSeq_ENCFF013IKJ\ type bigWig\ visibility full\ encTfChipPkENCFF225GFQ H1-hESC GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in H1-hESC from ENCODE 3 (ENCFF225GFQ) 0 249 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in H1-hESC from ENCODE 3 (ENCFF225GFQ)\ parent encTfChipPk off\ shortLabel H1-hESC GABPA\ subGroups cellType=H1-hESC factor=GABPA\ track encTfChipPkENCFF225GFQ\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_fwd H9MelanocyticInduction_Day30Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward 0 249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_fwd H9MelanocyticInduction_Day30Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward 1 249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHrgecSignal HRGEC Sg bigWig 0 7095.64 HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE 0 249 85 255 232 170 255 243 0 0 0 regulation 1 color 85,255,232\ longLabel HRGEC renal glomerular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRGEC Sg\ subGroups view=c_Signal cellType=HRGEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrgecSignal\ type bigWig 0 7095.64\ ENCFF976GAM ENCFF976GAM bigWig Endodermal cell, female embryo (5 days): (5) CTCF, ENCFF976GAM 2 250 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF976GAM.bw\ color 0,176,240\ longLabel Endodermal cell, female embryo (5 days): (5) CTCF, ENCFF976GAM\ maxHeightPixels 30\ parent CTCF_view off\ priority 25.4\ shortLabel ENCFF976GAM\ subGroups organ=embryo view=CTCF_view simpleBiosample=endodermal_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF976GAM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF652BHX ENCSR000BKB Peak bigBed 5 GM12878 MEF2A peaks 4 250 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/787b79da-90b8-483e-b1ed-bec69bd71044/ENCFF652BHX.bigBed\ labelFields none\ longLabel GM12878 MEF2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF652BHX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF626XQK ENCSR000DUB Peak bigBed 5 HeLa-S3 G1b phase CTCF peak 4 250 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/28924c33-695e-4ec8-8275-f2aff0043ab6/ENCFF626XQK.bigBed\ color 0,176,240\ labelFields none\ longLabel HeLa-S3 G1b phase CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUB Peak\ track wgEncodeReg4Epigenetics_ENCFF626XQK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF798COU ENCSR165QTZ - strand bigWig Pancreas tissue female adult (61 years) - strand total RNA-seq signal 2 250 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/35ea79ed-9a74-446d-97a8-eca9ae1103e7/ENCFF798COU.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR165QTZ - strand\ track wgEncodeReg4RnaSeq_ENCFF798COU\ type bigWig\ visibility full\ encTfChipPkENCFF009IVJ H1-hESC HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF009IVJ) 0 250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF009IVJ)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC2 1\ subGroups cellType=H1-hESC factor=HDAC2\ track encTfChipPkENCFF009IVJ\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_rev H9MelanocyticInduction_Day30Br1- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse 0 250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_rev H9MelanocyticInduction_Day30Br1- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse 1 250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep1%20%28H9EB-1%20d30%29.CNhs12903.12638-134G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep1 (H9EB-1 d30)_CNhs12903_12638-134G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12638-134G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep1H9EB1D30_CNhs12903_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12638-134G1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecllySignal HMVEC-LLy Sg bigWig 0 21274 HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE 0 250 85 255 243 170 255 249 0 0 0 regulation 1 color 85,255,243\ longLabel HMVEC-LLy lung microvascular endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-LLy Sg\ subGroups view=c_Signal cellType=HMVEC-LLy treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecllySignal\ type bigWig 0 21274\ ENCFF084YDG ENCFF084YDG bigWig Endothelial cell, male adult (53 years): (5) CTCF, ENCFF084YDG 2 251 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF084YDG.bw\ color 0,176,240\ longLabel Endothelial cell, male adult (53 years): (5) CTCF, ENCFF084YDG\ maxHeightPixels 30\ parent CTCF_view off\ priority 26.4\ shortLabel ENCFF084YDG\ subGroups organ=epithelium view=CTCF_view simpleBiosample=endothelial_cell-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeCtcf\ track ENCFF084YDG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF778ICR ENCSR000BKB Signal bigWig GM12878 MEF2A ENCSR000BKB signal 2 251 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d3bfa986-6ade-43cd-92ab-2bc747151b24/ENCFF778ICR.bigWig\ color 254,75,173\ longLabel GM12878 MEF2A ENCSR000BKB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKB Signal\ track wgEncodeReg4TfChip_ENCFF778ICR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF599XVV ENCSR000DUB Signal bigWig HeLa-S3 G1b phase CTCF signal 2 251 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b6307d03-ad8f-4f9a-80da-591959252f4c/ENCFF599XVV.bigWig\ color 0,176,240\ longLabel HeLa-S3 G1b phase CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUB Signal\ track wgEncodeReg4Epigenetics_ENCFF599XVV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF280UGW ENCSR168PXI + strand bigWig Mesothelial cell of epicardium + strand total RNA-seq signal 2 251 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/dd2e5a57-9756-4c37-b5b0-5ab6fccfd1f9/ENCFF280UGW.bigWig\ color 116,50,165\ longLabel Mesothelial cell of epicardium + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR168PXI + strand\ track wgEncodeReg4RnaSeq_ENCFF280UGW\ type bigWig\ visibility full\ encTfChipPkENCFF497YNJ H1-hESC HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF497YNJ) 0 251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in H1-hESC from ENCODE 3 (ENCFF497YNJ)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC2 2\ subGroups cellType=H1-hESC factor=HDAC2\ track encTfChipPkENCFF497YNJ\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_fwd H9MelanocyticInduction_Day30Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward 0 251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_fwd H9MelanocyticInduction_Day30Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward 1 251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdneoSignal HMVEC-dNeo Sg bigWig 0 16586 HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE 0 251 85 255 244 170 255 249 0 0 0 regulation 1 color 85,255,244\ longLabel HMVEC-dNeo dermal MV endothelial cell, neonate DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dNeo Sg\ subGroups view=c_Signal cellType=HMVEC-dNeo treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdneoSignal\ type bigWig 0 16586\ ENCFF536DEU ENCFF536DEU bigWig Esophagus squamous epithelium, male adult (37 years): (5) CTCF, ENCFF536DEU 2 252 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF536DEU.bw\ color 0,176,240\ longLabel Esophagus squamous epithelium, male adult (37 years): (5) CTCF, ENCFF536DEU\ maxHeightPixels 30\ parent CTCF_view off\ priority 28.4\ shortLabel ENCFF536DEU\ subGroups organ=esophagus view=CTCF_view simpleBiosample=esophagus_squamous_epithelium-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF536DEU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF852GZY ENCSR000BKC Peak bigBed 5 H1 ATF3 peaks 4 252 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/b522f071-6043-467c-9ca4-26222faa217c/ENCFF852GZY.bigBed\ labelFields none\ longLabel H1 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF852GZY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF410JFY ENCSR000DUF Peak bigBed 5 HepG2 H3K4me3 peak 4 252 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/f9179dbd-d5ab-4a39-b90d-022bd2de565a/ENCFF410JFY.bigBed\ color 255,0,0\ longLabel HepG2 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUF Peak\ track wgEncodeReg4Epigenetics_ENCFF410JFY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF509LFJ ENCSR168PXI - strand bigWig Mesothelial cell of epicardium - strand total RNA-seq signal 2 252 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/3cf25c47-ccef-45ea-8109-68d13a654e2f/ENCFF509LFJ.bigWig\ color 116,50,165\ longLabel Mesothelial cell of epicardium - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR168PXI - strand\ track wgEncodeReg4RnaSeq_ENCFF509LFJ\ type bigWig\ visibility full\ encTfChipPkENCFF129WNO H1-hESC HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in H1-hESC from ENCODE 3 (ENCFF129WNO) 0 252 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in H1-hESC from ENCODE 3 (ENCFF129WNO)\ parent encTfChipPk off\ shortLabel H1-hESC HDAC6\ subGroups cellType=H1-hESC factor=HDAC6\ track encTfChipPkENCFF129WNO\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_rev H9MelanocyticInduction_Day30Br2- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse 0 252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_rev H9MelanocyticInduction_Day30Br2- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse 1 252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep2%20%28H9EB-2%20d30%29.CNhs12836.12736-135H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep2 (H9EB-2 d30)_CNhs12836_12736-135H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12736-135H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep2H9EB2D30_CNhs12836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12736-135H9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHmvecdadSignal HMVEC-dAd Sg bigWig 0 7923.4 HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE 0 252 85 255 246 170 255 250 0 0 0 regulation 1 color 85,255,246\ longLabel HMVEC-dAd dermal microvascular endothelial cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dAd Sg\ subGroups view=c_Signal cellType=HMVEC-dAd treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdadSignal\ type bigWig 0 7923.4\ ENCFF181ESK ENCFF181ESK bigWig WERI-Rb-1: (5) CTCF, ENCFF181ESK 2 253 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF181ESK.bw\ color 0,176,240\ longLabel WERI-Rb-1: (5) CTCF, ENCFF181ESK\ maxHeightPixels 30\ parent CTCF_view off\ priority 170.4\ shortLabel ENCFF181ESK\ subGroups organ=eye view=CTCF_view simpleBiosample=WERI-Rb-1 biosampleType=cell_line donor=ENCDO000ADT dataType=typeCtcf\ track ENCFF181ESK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF753CFJ ENCSR000BKC Signal bigWig H1 ATF3 ENCSR000BKC signal 2 253 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/01722e07-e30e-4bcb-801d-145778b51f8f/ENCFF753CFJ.bigWig\ color 118,158,101\ longLabel H1 ATF3 ENCSR000BKC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKC Signal\ track wgEncodeReg4TfChip_ENCFF753CFJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF732PJK ENCSR000DUF Signal bigWig HepG2 H3K4me3 signal 2 253 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/ed264084-4876-476d-8ff3-a9e8b81d1be9/ENCFF732PJK.bigWig\ color 255,0,0\ longLabel HepG2 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUF Signal\ track wgEncodeReg4Epigenetics_ENCFF732PJK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF574EJQ ENCSR171CLQ + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (81 years) + strand total RNA-seq signal 2 253 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/cca935d0-6be8-4d42-9835-c590d5cdd912/ENCFF574EJQ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (81 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR171CLQ + strand\ track wgEncodeReg4RnaSeq_ENCFF574EJQ\ type bigWig\ visibility full\ encTfChipPkENCFF312GEN H1-hESC JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in H1-hESC from ENCODE 3 (ENCFF312GEN) 0 253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUN in H1-hESC from ENCODE 3 (ENCFF312GEN)\ parent encTfChipPk off\ shortLabel H1-hESC JUN\ subGroups cellType=H1-hESC factor=JUN\ track encTfChipPkENCFF312GEN\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_fwd H9MelanocyticInduction_Day30Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward 0 253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_fwd H9MelanocyticInduction_Day30Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward 1 253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHrcepicSignal HRCEpiC Sg bigWig 0 4920.93 HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE 0 253 85 251 255 170 253 255 0 0 0 regulation 1 color 85,251,255\ longLabel HRCEpiC renal cortical epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRCEpiC Sg\ subGroups view=c_Signal cellType=HRCEpiC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHrcepicSignal\ type bigWig 0 4920.93\ ENCFF962LOU ENCFF962LOU bigWig Mesothelial cell of epicardium, female embryo (5 days): (5) CTCF, ENCFF962LOU 2 254 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF962LOU.bw\ color 0,176,240\ longLabel Mesothelial cell of epicardium, female embryo (5 days): (5) CTCF, ENCFF962LOU\ maxHeightPixels 30\ parent CTCF_view off\ priority 66.4\ shortLabel ENCFF962LOU\ subGroups organ=heart view=CTCF_view simpleBiosample=mesothelial_cell_of_epicardium-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF962LOU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF524BTL ENCSR000BKD Peak bigBed 5 H1 YY1 peaks 4 254 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/f7a9de7c-8b06-470b-94a1-f7448f856069/ENCFF524BTL.bigBed\ labelFields none\ longLabel H1 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF524BTL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF219EBQ ENCSR000DUH Peak bigBed 5 Foreskin fibroblast male newborn CTCF peak 4 254 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/851117fd-6419-4a5d-a717-ca4c96339d5b/ENCFF219EBQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Foreskin fibroblast male newborn CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUH Peak\ track wgEncodeReg4Epigenetics_ENCFF219EBQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF602IWY ENCSR171CLQ - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (81 years) - strand total RNA-seq signal 2 254 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/c4357172-ae4c-4ea8-9d74-48c465c6ba56/ENCFF602IWY.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (81 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR171CLQ - strand\ track wgEncodeReg4RnaSeq_ENCFF602IWY\ type bigWig\ visibility full\ encTfChipPkENCFF443HNU H1-hESC JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF443HNU) 0 254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF443HNU)\ parent encTfChipPk off\ shortLabel H1-hESC JUND 1\ subGroups cellType=H1-hESC factor=JUND\ track encTfChipPkENCFF443HNU\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_rev H9MelanocyticInduction_Day30Br3- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse 0 254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day30Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_rev H9MelanocyticInduction_Day30Br3- bigWig H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse 1 254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day30%2c%20biol_rep3%20%28H9EB-3%20d30%29.CNhs12918.12834-137A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day30, biol_rep3 (H9EB-3 d30)_CNhs12918_12834-137A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12834-137A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day30Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay30BiolRep3H9EB3D30_CNhs12918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12834-137A8\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHreSignal HRE Sg bigWig 0 6938.49 HRE renal epithelium DNaseI Signal from ENCODE 0 254 85 248 255 170 251 255 0 0 0 regulation 1 color 85,248,255\ longLabel HRE renal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRE Sg\ subGroups view=c_Signal cellType=HRE treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwHreSignal\ type bigWig 0 6938.49\ ENCFF872ERK ENCFF872ERK bigWig Right atrium auricular region, female adult (51 years): (5) CTCF, ENCFF872ERK 2 255 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF872ERK.bw\ color 0,176,240\ longLabel Right atrium auricular region, female adult (51 years): (5) CTCF, ENCFF872ERK\ maxHeightPixels 30\ parent CTCF_view on\ priority 133.4\ shortLabel ENCFF872ERK\ subGroups organ=heart view=CTCF_view simpleBiosample=right_atrium_auricular_region-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF872ERK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF904SDR ENCSR000BKD Signal bigWig H1 YY1 ENCSR000BKD signal 2 255 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/e018c444-445a-4f64-bcd7-5add89805b70/ENCFF904SDR.bigWig\ color 118,158,101\ longLabel H1 YY1 ENCSR000BKD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKD Signal\ track wgEncodeReg4TfChip_ENCFF904SDR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF047ISZ ENCSR000DUH Signal bigWig Foreskin fibroblast male newborn CTCF signal 2 255 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/5e1c4e2d-baca-4afa-88ca-eb6068b1729a/ENCFF047ISZ.bigWig\ color 0,176,240\ longLabel Foreskin fibroblast male newborn CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUH Signal\ track wgEncodeReg4Epigenetics_ENCFF047ISZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF295ITZ ENCSR171ZNI + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 255 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/c99cf5a1-9420-40ae-b7ba-604bebf608d9/ENCFF295ITZ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR171ZNI + strand\ track wgEncodeReg4RnaSeq_ENCFF295ITZ\ type bigWig\ visibility full\ encTfChipPkENCFF646IUA H1-hESC JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF646IUA) 0 255 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in H1-hESC from ENCODE 3 (ENCFF646IUA)\ parent encTfChipPk off\ shortLabel H1-hESC JUND 2\ subGroups cellType=H1-hESC factor=JUND\ track encTfChipPkENCFF646IUA\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_fwd H9MelanocyticInduction_Day34Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward 0 255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_fwd H9MelanocyticInduction_Day34Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward 1 255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwNhekSignal NHEK Sg bigWig 0 9597.75 NHEK epidermal keratinocyte DNaseI Signal from ENCODE 0 255 85 238 255 170 246 255 0 0 0 regulation 1 color 85,238,255\ longLabel NHEK epidermal keratinocyte DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel NHEK Sg\ subGroups view=c_Signal cellType=NHEK treatment=n_a tissue=skin cancer=normal\ track wgEncodeRegDnaseUwNhekSignal\ type bigWig 0 9597.75\ ENCFF170TDI ENCFF170TDI bigWig Heart right ventricle, male adult (40 years): (5) CTCF, ENCFF170TDI 2 256 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF170TDI.bw\ color 0,176,240\ longLabel Heart right ventricle, male adult (40 years): (5) CTCF, ENCFF170TDI\ maxHeightPixels 30\ parent CTCF_view off\ priority 47.4\ shortLabel ENCFF170TDI\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_right_ventricle-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeCtcf\ track ENCFF170TDI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF928LDD ENCSR000BKE Peak bigBed 5 HepG2 ATF3 peaks 4 256 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/24cc9ecb-412e-4c33-8480-a07636d6a58d/ENCFF928LDD.bigBed\ labelFields none\ longLabel HepG2 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF928LDD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF439MGL ENCSR000DUJ Peak bigBed 5 Foreskin fibroblast male newborn H3K4me3 peak 4 256 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/3e454b10-c2b8-4541-88bd-0deeac3b3978/ENCFF439MGL.bigBed\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUJ Peak\ track wgEncodeReg4Epigenetics_ENCFF439MGL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF179AXC ENCSR171ZNI - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 256 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/2f0f0620-5b6c-496e-a103-2096504c1940/ENCFF179AXC.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR171ZNI - strand\ track wgEncodeReg4RnaSeq_ENCFF179AXC\ type bigWig\ visibility full\ encTfChipPkENCFF562OAN H1-hESC KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in H1-hESC from ENCODE 3 (ENCFF562OAN) 0 256 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM1A in H1-hESC from ENCODE 3 (ENCFF562OAN)\ parent encTfChipPk off\ shortLabel H1-hESC KDM1A\ subGroups cellType=H1-hESC factor=KDM1A\ track encTfChipPkENCFF562OAN\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_rev H9MelanocyticInduction_Day34Br1- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse 0 256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_rev H9MelanocyticInduction_Day34Br1- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse 1 256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep1%20%28H9EB-1%20d34%29.CNhs12904.12639-134G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep1 (H9EB-1 d34)_CNhs12904_12639-134G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12639-134G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep1H9EB1D34_CNhs12904_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12639-134G2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwSaecSignal SAEC Sg bigWig 0 4884.78 SAEC small airway epithelium DNaseI Signal from ENCODE 0 256 85 231 255 170 243 255 0 0 0 regulation 1 color 85,231,255\ longLabel SAEC small airway epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SAEC Sg\ subGroups view=c_Signal cellType=SAEC treatment=n_a tissue=lung cancer=normal\ track wgEncodeRegDnaseUwSaecSignal\ type bigWig 0 4884.78\ ENCFF252IVK ENCFF252IVK bigWig Heart left ventricle, female adult (46 years): (5) CTCF, ENCFF252IVK 2 257 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF252IVK.bw\ color 0,176,240\ longLabel Heart left ventricle, female adult (46 years): (5) CTCF, ENCFF252IVK\ maxHeightPixels 30\ parent CTCF_view off\ priority 40.4\ shortLabel ENCFF252IVK\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_left_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeCtcf\ track ENCFF252IVK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF662YUV ENCSR000BKE Signal bigWig HepG2 ATF3 ENCSR000BKE signal 2 257 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/f18dee85-e854-4593-9abd-f50cf554483f/ENCFF662YUV.bigWig\ color 137,152,82\ longLabel HepG2 ATF3 ENCSR000BKE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKE Signal\ track wgEncodeReg4TfChip_ENCFF662YUV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF944PFM ENCSR000DUJ Signal bigWig Foreskin fibroblast male newborn H3K4me3 signal 2 257 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/15e8822f-2e7e-44eb-a6a4-b3046204bcb9/ENCFF944PFM.bigWig\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUJ Signal\ track wgEncodeReg4Epigenetics_ENCFF944PFM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF809PGE ENCSR176KEW + strand bigWig Adrenal gland tissue female adult (59 years) + strand total RNA-seq signal 2 257 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/8d4facc4-d5a5-4d97-9f28-e6853c34504c/ENCFF809PGE.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR176KEW + strand\ track wgEncodeReg4RnaSeq_ENCFF809PGE\ type bigWig\ visibility full\ encTfChipPkENCFF205WRX H1-hESC KDM4A narrowPeak Transcription Factor ChIP-seq Peaks of KDM4A in H1-hESC from ENCODE 3 (ENCFF205WRX) 0 257 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM4A in H1-hESC from ENCODE 3 (ENCFF205WRX)\ parent encTfChipPk off\ shortLabel H1-hESC KDM4A\ subGroups cellType=H1-hESC factor=KDM4A\ track encTfChipPkENCFF205WRX\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_fwd H9MelanocyticInduction_Day34Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward 0 257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_fwd H9MelanocyticInduction_Day34Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward 1 257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwPrecSignal PrEC Sg bigWig 0 4302.39 PrEC prostate epithelium DNaseI Signal from ENCODE 0 257 85 226 255 170 240 255 0 0 0 regulation 1 color 85,226,255\ longLabel PrEC prostate epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel PrEC Sg\ subGroups view=c_Signal cellType=PrEC treatment=n_a tissue=prostate cancer=normal\ track wgEncodeRegDnaseUwPrecSignal\ type bigWig 0 4302.39\ ENCFF803TUM ENCFF803TUM bigWig Heart right ventricle, female adult (46 years): (5) CTCF, ENCFF803TUM 2 258 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF803TUM.bw\ color 0,176,240\ longLabel Heart right ventricle, female adult (46 years): (5) CTCF, ENCFF803TUM\ maxHeightPixels 30\ parent CTCF_view off\ priority 45.4\ shortLabel ENCFF803TUM\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_right_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeCtcf\ track ENCFF803TUM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF911VPU ENCSR000BKF Peak bigBed 5 K562 ZBTB33 peaks 4 258 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/ed8827e3-d13e-4d90-b37b-95088736b8c7/ENCFF911VPU.bigBed\ labelFields none\ longLabel K562 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF911VPU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF638UXD ENCSR000DUK Peak bigBed 5 HFF-Myc originated from foreskin fibroblast H3K4me3 peak 4 258 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/f166b72f-b5be-4299-b88d-06788fec2dbd/ENCFF638UXD.bigBed\ color 255,0,0\ longLabel HFF-Myc originated from foreskin fibroblast H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUK Peak\ track wgEncodeReg4Epigenetics_ENCFF638UXD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF896WDT ENCSR176KEW - strand bigWig Adrenal gland tissue female adult (59 years) - strand total RNA-seq signal 2 258 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/2ac58e1d-52fd-4e75-a19d-2a2979657a25/ENCFF896WDT.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR176KEW - strand\ track wgEncodeReg4RnaSeq_ENCFF896WDT\ type bigWig\ visibility full\ encTfChipPkENCFF342EEV H1-hESC KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in H1-hESC from ENCODE 3 (ENCFF342EEV) 0 258 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of KDM5A in H1-hESC from ENCODE 3 (ENCFF342EEV)\ parent encTfChipPk off\ shortLabel H1-hESC KDM5A\ subGroups cellType=H1-hESC factor=KDM5A\ track encTfChipPkENCFF342EEV\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_rev H9MelanocyticInduction_Day34Br2- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse 0 258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_rev H9MelanocyticInduction_Day34Br2- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse 1 258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep2%20%28H9EB-2%20d34%29.CNhs12906.12737-135I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep2 (H9EB-2 d34)_CNhs12906_12737-135I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12737-135I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep2H9EB2D34_CNhs12906_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12737-135I1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHeepicSignal HEEpiC Sg bigWig 0 20601.1 HEEpiC esophageal epithelium DNaseI Signal from ENCODE 0 258 85 220 255 170 237 255 0 0 0 regulation 1 color 85,220,255\ longLabel HEEpiC esophageal epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HEEpiC Sg\ subGroups view=c_Signal cellType=HEEpiC treatment=n_a tissue=esophagus cancer=normal\ track wgEncodeRegDnaseUwHeepicSignal\ type bigWig 0 20601.1\ ENCFF359FNN ENCFF359FNN bigWig Heart right ventricle, male adult (69 years): (5) CTCF, ENCFF359FNN 2 259 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF359FNN.bw\ color 0,176,240\ longLabel Heart right ventricle, male adult (69 years): (5) CTCF, ENCFF359FNN\ maxHeightPixels 30\ parent CTCF_view off\ priority 51.4\ shortLabel ENCFF359FNN\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_right_ventricle-_male_adult__69_years_ biosampleType=tissue donor=ENCDO477WED dataType=typeCtcf\ track ENCFF359FNN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF851UBU ENCSR000BKF Signal bigWig K562 ZBTB33 ENCSR000BKF signal 2 259 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/af3c0a4e-b2a2-45e1-85df-25aab0c6b0b8/ENCFF851UBU.bigWig\ color 254,75,173\ longLabel K562 ZBTB33 ENCSR000BKF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKF Signal\ track wgEncodeReg4TfChip_ENCFF851UBU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF237UYF ENCSR000DUK Signal bigWig HFF-Myc originated from foreskin fibroblast H3K4me3 signal 2 259 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/5c9b98a4-6d55-4b7a-9bf0-85e069cc0ac1/ENCFF237UYF.bigWig\ color 255,0,0\ longLabel HFF-Myc originated from foreskin fibroblast H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUK Signal\ track wgEncodeReg4Epigenetics_ENCFF237UYF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF964AQJ ENCSR177CWW + strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal 2 259 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/1974c1af-599a-4823-ba7c-c9663db12d84/ENCFF964AQJ.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR177CWW + strand\ track wgEncodeReg4RnaSeq_ENCFF964AQJ\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm06990Signal GM06990 Sg bigWig 0 14706.5 GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 259 85 205 255 170 230 255 0 0 0 regulation 1 color 85,205,255\ longLabel GM06990 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM06990 Sg\ subGroups view=c_Signal cellType=GM06990 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm06990Signal\ type bigWig 0 14706.5\ encTfChipPkENCFF712RIS H1-hESC MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in H1-hESC from ENCODE 3 (ENCFF712RIS) 0 259 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAFK in H1-hESC from ENCODE 3 (ENCFF712RIS)\ parent encTfChipPk off\ shortLabel H1-hESC MAFK\ subGroups cellType=H1-hESC factor=MAFK\ track encTfChipPkENCFF712RIS\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_fwd H9MelanocyticInduction_Day34Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward 0 259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_fwd H9MelanocyticInduction_Day34Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward 1 259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ ENCFF829QZW ENCFF829QZW bigWig Left ventricle myocardium inferior, male adult (60 years): (5) CTCF, ENCFF829QZW 2 260 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF829QZW.bw\ color 0,176,240\ longLabel Left ventricle myocardium inferior, male adult (60 years): (5) CTCF, ENCFF829QZW\ maxHeightPixels 30\ parent CTCF_view off\ priority 62.4\ shortLabel ENCFF829QZW\ subGroups organ=heart view=CTCF_view simpleBiosample=left_ventricle_myocardium_inferior-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeCtcf\ track ENCFF829QZW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF936NCS ENCSR000BKH Peak bigBed 5 K562 BCLAF1 peaks 4 260 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7873e6cf-fce3-439b-bec2-a59d98098299/ENCFF936NCS.bigBed\ labelFields none\ longLabel K562 BCLAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF936NCS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF680WYR ENCSR000DUM Peak bigBed 5 HFF-Myc originated from foreskin fibroblast CTCF peak 4 260 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/db2284fc-d4bc-47ae-a29d-ac8d36e5e16d/ENCFF680WYR.bigBed\ color 0,176,240\ labelFields none\ longLabel HFF-Myc originated from foreskin fibroblast CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUM Peak\ track wgEncodeReg4Epigenetics_ENCFF680WYR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF487CYI ENCSR177CWW - strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal 2 260 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/7218cc48-412a-47b6-b82e-176e076d885b/ENCFF487CYI.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR177CWW - strand\ track wgEncodeReg4RnaSeq_ENCFF487CYI\ type bigWig\ visibility full\ encTfChipPkENCFF392JJN H1-hESC MYC narrowPeak Transcription Factor ChIP-seq Peaks of MYC in H1-hESC from ENCODE 3 (ENCFF392JJN) 0 260 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in H1-hESC from ENCODE 3 (ENCFF392JJN)\ parent encTfChipPk off\ shortLabel H1-hESC MYC\ subGroups cellType=H1-hESC factor=MYC\ track encTfChipPkENCFF392JJN\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_rev H9MelanocyticInduction_Day34Br3- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse 0 260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day34Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_rev H9MelanocyticInduction_Day34Br3- bigWig H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse 1 260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day34%2c%20biol_rep3%20%28H9EB-3%20d34%29.CNhs12919.12835-137A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day34, biol_rep3 (H9EB-3 d34)_CNhs12919_12835-137A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12835-137A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day34Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay34BiolRep3H9EB3D34_CNhs12919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12835-137A9\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwHepg2Signal HepG2 Sg bigWig 0 4511.03 HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE 0 260 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel HepG2 hepatocellular carcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HepG2 Sg\ subGroups view=c_Signal cellType=HepG2 treatment=n_a tissue=liver cancer=cancer\ track wgEncodeRegDnaseUwHepg2Signal\ type bigWig 0 4511.03\ wgEncodeRegDnaseUwCaco2Signal Caco-2 Sg bigWig 0 4903.16 Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE 0 261 85 193 255 170 224 255 0 0 0 regulation 1 color 85,193,255\ longLabel Caco-2 colon adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Caco-2 Sg\ subGroups view=c_Signal cellType=Caco-2 treatment=n_a tissue=colon cancer=cancer\ track wgEncodeRegDnaseUwCaco2Signal\ type bigWig 0 4903.16\ ENCFF440RUS ENCFF440RUS bigWig Heart left ventricle, female adult (53 years): (5) CTCF, ENCFF440RUS 2 261 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF440RUS.bw\ color 0,176,240\ longLabel Heart left ventricle, female adult (53 years): (5) CTCF, ENCFF440RUS\ maxHeightPixels 30\ parent CTCF_view off\ priority 41.4\ shortLabel ENCFF440RUS\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_left_ventricle-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF440RUS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF132TYI ENCSR000BKH Signal bigWig K562 BCLAF1 ENCSR000BKH signal 2 261 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f60a6f98-8d90-422c-80a1-c7a79372109a/ENCFF132TYI.bigWig\ color 254,75,173\ longLabel K562 BCLAF1 ENCSR000BKH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKH Signal\ track wgEncodeReg4TfChip_ENCFF132TYI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF449WXS ENCSR000DUM Signal bigWig HFF-Myc originated from foreskin fibroblast CTCF signal 2 261 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/45ae864f-2001-40ee-93ad-2c761362fc11/ENCFF449WXS.bigWig\ color 0,176,240\ longLabel HFF-Myc originated from foreskin fibroblast CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUM Signal\ track wgEncodeReg4Epigenetics_ENCFF449WXS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF014YFU ENCSR177XCG + strand bigWig CD4-positive, alpha-beta memory T cell male adult (43 years) + strand total RNA-seq signal 2 261 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/41ac3101-4def-4894-894d-bfb6db27baad/ENCFF014YFU.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta memory T cell male adult (43 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR177XCG + strand\ track wgEncodeReg4RnaSeq_ENCFF014YFU\ type bigWig\ visibility full\ encTfChipPkENCFF794GVQ H1-hESC NANOG narrowPeak Transcription Factor ChIP-seq Peaks of NANOG in H1-hESC from ENCODE 3 (ENCFF794GVQ) 0 261 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NANOG in H1-hESC from ENCODE 3 (ENCFF794GVQ)\ parent encTfChipPk off\ shortLabel H1-hESC NANOG\ subGroups cellType=H1-hESC factor=NANOG\ track encTfChipPkENCFF794GVQ\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_fwd H9MelanocyticInduction_Day41Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward 0 261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_fwd H9MelanocyticInduction_Day41Br1+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward 1 261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br1+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ ENCFF886TBW ENCFF886TBW bigWig Right atrium auricular region, female adult (53 years): (5) CTCF, ENCFF886TBW 2 262 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF886TBW.bw\ color 0,176,240\ longLabel Right atrium auricular region, female adult (53 years): (5) CTCF, ENCFF886TBW\ maxHeightPixels 30\ parent CTCF_view off\ priority 134.4\ shortLabel ENCFF886TBW\ subGroups organ=heart view=CTCF_view simpleBiosample=right_atrium_auricular_region-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF886TBW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF460SIS ENCSR000BKJ Peak bigBed 5 GM12891 YY1 peaks 4 262 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ca56ac26-b512-4669-a715-35c619aa5aea/ENCFF460SIS.bigBed\ labelFields none\ longLabel GM12891 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF460SIS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF942MXV ENCSR000DUO Peak bigBed 5 HL-60 H3K4me3 peak 4 262 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/66571b7f-2fdb-4c3c-a4db-ef0b0aecea43/ENCFF942MXV.bigBed\ color 255,0,0\ longLabel HL-60 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUO Peak\ track wgEncodeReg4Epigenetics_ENCFF942MXV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF218TXJ ENCSR177XCG - strand bigWig CD4-positive, alpha-beta memory T cell male adult (43 years) - strand total RNA-seq signal 2 262 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/4b5702c5-8f41-4e70-8077-90fbdee830ba/ENCFF218TXJ.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta memory T cell male adult (43 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR177XCG - strand\ track wgEncodeReg4RnaSeq_ENCFF218TXJ\ type bigWig\ visibility full\ encTfChipPkENCFF407IVS H1-hESC NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in H1-hESC from ENCODE 3 (ENCFF407IVS) 0 262 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NRF1 in H1-hESC from ENCODE 3 (ENCFF407IVS)\ parent encTfChipPk off\ shortLabel H1-hESC NRF1\ subGroups cellType=H1-hESC factor=NRF1\ track encTfChipPkENCFF407IVS\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_rev H9MelanocyticInduction_Day41Br1- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse 0 262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_rev H9MelanocyticInduction_Day41Br1- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse 1 262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep1%20%28H9EB-1%20d41%29.CNhs12905.12640-134G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep1 (H9EB-1 d41)_CNhs12905_12640-134G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12640-134G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br1-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep1H9EB1D41_CNhs12905_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12640-134G3\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwSknshraSignal SK-N-SH_RA Sg bigWig 0 4488.56 SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE 0 262 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel SK-N-SH_RA neuroblastoma cell line, RA treated DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SK-N-SH_RA Sg\ subGroups view=c_Signal cellType=SK-N-SH_RA treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknshraSignal\ type bigWig 0 4488.56\ wgEncodeRegDnaseUwCd20ro01778Signal CD20+_RO01778 Sg bigWig 0 1572.73 CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE 0 263 85 183 255 170 219 255 0 0 0 regulation 1 color 85,183,255\ longLabel CD20+_RO01778 B-lymphocyte, CD20+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel CD20+_RO01778 Sg\ subGroups view=c_Signal cellType=CD20_RO01778 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwCd20ro01778Signal\ type bigWig 0 1572.73\ ENCFF011PEP ENCFF011PEP bigWig Heart right ventricle, male adult (61 years): (5) CTCF, ENCFF011PEP 2 263 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF011PEP.bw\ color 0,176,240\ longLabel Heart right ventricle, male adult (61 years): (5) CTCF, ENCFF011PEP\ maxHeightPixels 30\ parent CTCF_view off\ priority 49.4\ shortLabel ENCFF011PEP\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_right_ventricle-_male_adult__61_years_ biosampleType=tissue donor=ENCDO808ASZ dataType=typeCtcf\ track ENCFF011PEP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF805XWY ENCSR000BKJ Signal bigWig GM12891 YY1 ENCSR000BKJ signal 2 263 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/3a5b0ab2-2deb-4774-a9fc-9028545ff044/ENCFF805XWY.bigWig\ color 254,75,173\ longLabel GM12891 YY1 ENCSR000BKJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKJ Signal\ track wgEncodeReg4TfChip_ENCFF805XWY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF695YII ENCSR000DUO Signal bigWig HL-60 H3K4me3 signal 2 263 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/753a1b97-4b93-440d-9f53-d7103da26a99/ENCFF695YII.bigWig\ color 255,0,0\ longLabel HL-60 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUO Signal\ track wgEncodeReg4Epigenetics_ENCFF695YII\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF741HPN ENCSR182CBU + strand bigWig Esophagus muscularis mucosa tissue male adult (37 years) + strand total RNA-seq signal 2 263 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/e6b28f98-908b-4f0b-9363-6e7dcfaeedcf/ENCFF741HPN.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR182CBU + strand\ track wgEncodeReg4RnaSeq_ENCFF741HPN\ type bigWig\ visibility full\ encTfChipPkENCFF651QOL H1-hESC PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in H1-hESC from ENCODE 3 (ENCFF651QOL) 0 263 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PHF8 in H1-hESC from ENCODE 3 (ENCFF651QOL)\ parent encTfChipPk off\ shortLabel H1-hESC PHF8\ subGroups cellType=H1-hESC factor=PHF8\ track encTfChipPkENCFF651QOL\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_fwd H9MelanocyticInduction_Day41Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward 0 263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_fwd H9MelanocyticInduction_Day41Br2+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward 1 263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br2+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ ENCFF541CSJ ENCFF541CSJ bigWig Heart left ventricle, female adult (59 years): (5) CTCF, ENCFF541CSJ 2 264 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF541CSJ.bw\ color 0,176,240\ longLabel Heart left ventricle, female adult (59 years): (5) CTCF, ENCFF541CSJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 43.4\ shortLabel ENCFF541CSJ\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_left_ventricle-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCtcf\ track ENCFF541CSJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF927IYK ENCSR000BKK Peak bigBed 5 H1 EP300 peaks 4 264 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/e2f33993-3a1a-48bd-9f19-69124726de9e/ENCFF927IYK.bigBed\ labelFields none\ longLabel H1 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF927IYK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF833OFP ENCSR000DUP Peak bigBed 5 HL-60 CTCF peak 4 264 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9dfe2191-ed2b-4d01-ac8b-fc66caa58aac/ENCFF833OFP.bigBed\ color 0,176,240\ labelFields none\ longLabel HL-60 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUP Peak\ track wgEncodeReg4Epigenetics_ENCFF833OFP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF807ZPP ENCSR182CBU - strand bigWig Esophagus muscularis mucosa tissue male adult (37 years) - strand total RNA-seq signal 2 264 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/174aa750-e3b2-4ff8-aa89-05bb5ff70ad9/ENCFF807ZPP.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR182CBU - strand\ track wgEncodeReg4RnaSeq_ENCFF807ZPP\ type bigWig\ visibility full\ encTfChipPkENCFF422HDN H1-hESC POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in H1-hESC from ENCODE 3 (ENCFF422HDN) 0 264 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in H1-hESC from ENCODE 3 (ENCFF422HDN)\ parent encTfChipPk off\ shortLabel H1-hESC POLR2A\ subGroups cellType=H1-hESC factor=POLR2A\ track encTfChipPkENCFF422HDN\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_rev H9MelanocyticInduction_Day41Br2- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse 0 264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_rev H9MelanocyticInduction_Day41Br2- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse 1 264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep2%20%28H9EB-2%20d41%29.CNhs12907.12738-135I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep2 (H9EB-2 d41)_CNhs12907_12738-135I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12738-135I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br2-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep2H9EB2D41_CNhs12907_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12738-135I2\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwTh1Signal Th1 Sg bigWig 0 2056.65 Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 264 85 178 255 170 216 255 0 0 0 regulation 1 color 85,178,255\ longLabel Th1 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Th1 Sg\ subGroups view=c_Signal cellType=Th1 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh1Signal\ type bigWig 0 2056.65\ ENCFF257ODJ ENCFF257ODJ bigWig Heart right ventricle, female adult (56 years): (5) CTCF, ENCFF257ODJ 2 265 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF257ODJ.bw\ color 0,176,240\ longLabel Heart right ventricle, female adult (56 years): (5) CTCF, ENCFF257ODJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 46.4\ shortLabel ENCFF257ODJ\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_right_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeCtcf\ track ENCFF257ODJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF988PWB ENCSR000BKK Signal bigWig H1 EP300 ENCSR000BKK signal 2 265 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/c2f72303-c98c-4a96-abac-42b54c5e6b20/ENCFF988PWB.bigWig\ color 118,158,101\ longLabel H1 EP300 ENCSR000BKK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKK Signal\ track wgEncodeReg4TfChip_ENCFF988PWB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF244CXJ ENCSR000DUP Signal bigWig HL-60 CTCF signal 2 265 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b11db3a6-53bc-4b10-8ee2-e9d1c0c9e38a/ENCFF244CXJ.bigWig\ color 0,176,240\ longLabel HL-60 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUP Signal\ track wgEncodeReg4Epigenetics_ENCFF244CXJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF837ZJA ENCSR184LTL + strand bigWig Mucosa of descending colon tissue female adult (61 years) + strand total RNA-seq signal 2 265 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/ce4c4352-d90d-4287-b459-79ea9d24d2fc/ENCFF837ZJA.bigWig\ color 86,86,36\ longLabel Mucosa of descending colon tissue female adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR184LTL + strand\ track wgEncodeReg4RnaSeq_ENCFF837ZJA\ type bigWig\ visibility full\ encTfChipPkENCFF255FRL H1-hESC RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF255FRL) 0 265 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF255FRL)\ parent encTfChipPk off\ shortLabel H1-hESC RAD21 1\ subGroups cellType=H1-hESC factor=RAD21\ track encTfChipPkENCFF255FRL\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_fwd H9MelanocyticInduction_Day41Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward 0 265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_fwd H9MelanocyticInduction_Day41Br3+ bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward 1 265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br3+\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=forward\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwTh2Signal Th2 Sg bigWig 0 1526.14 Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE 0 265 85 176 255 170 215 255 0 0 0 regulation 1 color 85,176,255\ longLabel Th2 T-lymphocyte, helper type 2 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Th2 Sg\ subGroups view=c_Signal cellType=Th2 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwTh2Signal\ type bigWig 0 1526.14\ ENCFF412TOH ENCFF412TOH bigWig Heart left ventricle, female adult (56 years): (5) CTCF, ENCFF412TOH 2 266 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF412TOH.bw\ color 0,176,240\ longLabel Heart left ventricle, female adult (56 years): (5) CTCF, ENCFF412TOH\ maxHeightPixels 30\ parent CTCF_view off\ priority 42.4\ shortLabel ENCFF412TOH\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_left_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeCtcf\ track ENCFF412TOH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF544PCK ENCSR000BKM Peak bigBed 5 K562 GATA2 peaks 4 266 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1849bc2d-0ae0-489e-8c2f-7149e6d362dd/ENCFF544PCK.bigBed\ labelFields none\ longLabel K562 GATA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF544PCK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF079SQD ENCSR000DUQ Peak bigBed 5 Mammary epithelial cell female H3K4me3 peak 4 266 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/aafb019d-a41d-49ed-897d-2021c1eb94f9/ENCFF079SQD.bigBed\ color 255,0,0\ longLabel Mammary epithelial cell female H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUQ Peak\ track wgEncodeReg4Epigenetics_ENCFF079SQD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF920PNV ENCSR184LTL - strand bigWig Mucosa of descending colon tissue female adult (61 years) - strand total RNA-seq signal 2 266 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/9ac68ecd-7af7-43c2-80a5-97ee6576d9cc/ENCFF920PNV.bigWig\ color 86,86,36\ longLabel Mucosa of descending colon tissue female adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR184LTL - strand\ track wgEncodeReg4RnaSeq_ENCFF920PNV\ type bigWig\ visibility full\ encTfChipPkENCFF060IVS H1-hESC RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF060IVS) 0 266 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in H1-hESC from ENCODE 3 (ENCFF060IVS)\ parent encTfChipPk off\ shortLabel H1-hESC RAD21 2\ subGroups cellType=H1-hESC factor=RAD21\ track encTfChipPkENCFF060IVS\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_rev H9MelanocyticInduction_Day41Br3- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse 0 266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9MelanocyticInduction_Day41Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_rev H9MelanocyticInduction_Day41Br3- bigWig H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse 1 266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryoid%20body%20cells%2c%20melanocytic%20induction%2c%20day41%2c%20biol_rep3%20%28H9EB-3%20d41%29.CNhs12950.12836-137B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryoid body cells, melanocytic induction, day41, biol_rep3 (H9EB-3 d41)_CNhs12950_12836-137B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12836-137B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9MelanocyticInduction_Day41Br3-\ subGroups sequenceTech=hCAGE category=Embryoid_body_to_melanocyte strand=reverse\ track H9EmbryoidBodyCellsMelanocyticInductionDay41BiolRep3H9EB3D41_CNhs12950_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12836-137B1\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwTh1wb54553204Signal Th1_Wb54553204 Sg bigWig 0 593.107 Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE 0 266 85 173 255 170 214 255 0 0 0 regulation 1 color 85,173,255\ longLabel Th1_Wb54553204 T-lymphocyte, helper type 1 DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Th1_Wb54553204 Sg\ subGroups view=c_Signal cellType=Th1_Wb54553204 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwTh1wb54553204Signal\ type bigWig 0 593.107\ ENCFF430LIA ENCFF430LIA bigWig Heart right ventricle, male adult (66 years): (5) CTCF, ENCFF430LIA 2 267 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF430LIA.bw\ color 0,176,240\ longLabel Heart right ventricle, male adult (66 years): (5) CTCF, ENCFF430LIA\ maxHeightPixels 30\ parent CTCF_view off\ priority 50.4\ shortLabel ENCFF430LIA\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_right_ventricle-_male_adult__66_years_ biosampleType=tissue donor=ENCDO926KEV dataType=typeCtcf\ track ENCFF430LIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF371RWI ENCSR000BKM Signal bigWig K562 GATA2 ENCSR000BKM signal 2 267 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7e870322-5188-44e4-8f18-ae9f7dfe6315/ENCFF371RWI.bigWig\ color 254,75,173\ longLabel K562 GATA2 ENCSR000BKM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKM Signal\ track wgEncodeReg4TfChip_ENCFF371RWI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF083ONY ENCSR000DUQ Signal bigWig Mammary epithelial cell female H3K4me3 signal 2 267 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/1030fa01-168d-4ab9-a8f9-759c33d25809/ENCFF083ONY.bigWig\ color 255,0,0\ longLabel Mammary epithelial cell female H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUQ Signal\ track wgEncodeReg4Epigenetics_ENCFF083ONY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF542TGZ ENCSR185TQB + strand bigWig Aorta tissue female adult (41 years) + strand total RNA-seq signal 2 267 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/a067c06f-926a-41c7-a7fe-11bff11aeea7/ENCFF542TGZ.bigWig\ color 255,37,41\ longLabel Aorta tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR185TQB + strand\ track wgEncodeReg4RnaSeq_ENCFF542TGZ\ type bigWig\ visibility full\ encTfChipPkENCFF607WCG H1-hESC RBBP5 narrowPeak Transcription Factor ChIP-seq Peaks of RBBP5 in H1-hESC from ENCODE 3 (ENCFF607WCG) 0 267 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RBBP5 in H1-hESC from ENCODE 3 (ENCFF607WCG)\ parent encTfChipPk off\ shortLabel H1-hESC RBBP5\ subGroups cellType=H1-hESC factor=RBBP5\ track encTfChipPkENCFF607WCG\ wgEncodeRegDnaseUwJurkatSignal Jurkat Sg bigWig 0 5823.31 Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE 0 267 85 165 255 170 210 255 0 0 0 regulation 1 color 85,165,255\ longLabel Jurkat T-lymphocyte acute leukemia cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Jurkat Sg\ subGroups view=c_Signal cellType=Jurkat treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwJurkatSignal\ type bigWig 0 5823.31\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_fwd Tc:ARPE-19Emt_00hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward 0 267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_fwd Tc:ARPE-19Emt_00hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward 1 267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ENCFF505OIJ ENCFF505OIJ bigWig Heart right ventricle, male adult (43 years): (5) CTCF, ENCFF505OIJ 2 268 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF505OIJ.bw\ color 0,176,240\ longLabel Heart right ventricle, male adult (43 years): (5) CTCF, ENCFF505OIJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 48.4\ shortLabel ENCFF505OIJ\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_right_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeCtcf\ track ENCFF505OIJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF365HQT ENCSR000BKO Peak bigBed 5 K562 SP1 peaks 4 268 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/cdf6a156-3fed-45df-bdd3-6695a6b3eab4/ENCFF365HQT.bigBed\ labelFields none\ longLabel K562 SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF365HQT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF164SPU ENCSR000DUS Peak bigBed 5 Mammary epithelial cell female CTCF peak 4 268 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/4d2e6a9a-5fd6-40a0-827f-7b714cbd7e8d/ENCFF164SPU.bigBed\ color 0,176,240\ labelFields none\ longLabel Mammary epithelial cell female CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUS Peak\ track wgEncodeReg4Epigenetics_ENCFF164SPU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF726KEH ENCSR185TQB - strand bigWig Aorta tissue female adult (41 years) - strand total RNA-seq signal 2 268 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/fd445d0d-55e5-406f-a121-d60bae82afdd/ENCFF726KEH.bigWig\ color 255,37,41\ longLabel Aorta tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR185TQB - strand\ track wgEncodeReg4RnaSeq_ENCFF726KEH\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm12878Signal GM12878 Sg bigWig 0 7218.11 GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 268 85 152 255 170 203 255 0 0 0 regulation 1 color 85,152,255\ longLabel GM12878 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel GM12878 Sg\ subGroups view=c_Signal cellType=GM12878 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwGm12878Signal\ type bigWig 0 7218.11\ encTfChipPkENCFF779CWH H1-hESC REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF779CWH) 0 268 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF779CWH)\ parent encTfChipPk on\ shortLabel H1-hESC REST 1\ subGroups cellType=H1-hESC factor=REST\ track encTfChipPkENCFF779CWH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_rev Tc:ARPE-19Emt_00hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse 0 268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_rev Tc:ARPE-19Emt_00hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse 1 268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep1.CNhs14463.13625-146H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep1_CNhs14463_13625-146H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13625-146H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep1_CNhs14463_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13625-146H7\ urlLabel FANTOM5 Details:\ ENCFF915AST ENCFF915AST bigWig Heart left ventricle, male adult (43 years): (5) CTCF, ENCFF915AST 2 269 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF915AST.bw\ color 0,176,240\ longLabel Heart left ventricle, male adult (43 years): (5) CTCF, ENCFF915AST\ maxHeightPixels 30\ parent CTCF_view off\ priority 44.4\ shortLabel ENCFF915AST\ subGroups organ=heart view=CTCF_view simpleBiosample=heart_left_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeCtcf\ track ENCFF915AST\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF524IWI ENCSR000BKO Signal bigWig K562 SP1 ENCSR000BKO signal 2 269 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/48baa30c-7f8c-42e3-9ab1-be7d1e91d82b/ENCFF524IWI.bigWig\ color 254,75,173\ longLabel K562 SP1 ENCSR000BKO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKO Signal\ track wgEncodeReg4TfChip_ENCFF524IWI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF715XOZ ENCSR000DUS Signal bigWig Mammary epithelial cell female CTCF signal 2 269 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/3f509807-0230-45de-8ff9-a0fc176081ec/ENCFF715XOZ.bigWig\ color 0,176,240\ longLabel Mammary epithelial cell female CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUS Signal\ track wgEncodeReg4Epigenetics_ENCFF715XOZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF371QSS ENCSR194HVU + strand bigWig Spleen tissue female adult (51 years) + strand total RNA-seq signal 2 269 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6d822408-1d43-4d9b-8905-e8bde315b7e7/ENCFF371QSS.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR194HVU + strand\ track wgEncodeReg4RnaSeq_ENCFF371QSS\ type bigWig\ visibility full\ wgEncodeRegDnaseUwGm12865Signal GM12865 Sg bigWig 0 8525.5 GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE 0 269 85 147 255 170 201 255 0 0 0 regulation 1 color 85,147,255\ longLabel GM12865 B-lymphocyte, lymphoblastoid cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel GM12865 Sg\ subGroups view=c_Signal cellType=GM12865 treatment=n_a tissue=blood cancer=unknown\ track wgEncodeRegDnaseUwGm12865Signal\ type bigWig 0 8525.5\ encTfChipPkENCFF403CAJ H1-hESC REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF403CAJ) 0 269 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in H1-hESC from ENCODE 3 (ENCFF403CAJ)\ parent encTfChipPk off\ shortLabel H1-hESC REST 2\ subGroups cellType=H1-hESC factor=REST\ track encTfChipPkENCFF403CAJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_fwd Tc:ARPE-19Emt_00hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward 0 269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_fwd Tc:ARPE-19Emt_00hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward 1 269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ENCFF388PVO ENCFF388PVO bigWig HCT116: (5) CTCF, ENCFF388PVO 2 270 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF388PVO.bw\ color 0,176,240\ longLabel HCT116: (5) CTCF, ENCFF388PVO\ maxHeightPixels 30\ parent CTCF_view off\ priority 39.4\ shortLabel ENCFF388PVO\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=HCT116 biosampleType=cell_line donor=ENCDO000ABE dataType=typeCtcf\ track ENCFF388PVO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF468JZD ENCSR000BKP Peak bigBed 5 H1 JUND peaks 4 270 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/27b83243-77fd-4ebb-b47f-ffd07ab5b46d/ENCFF468JZD.bigBed\ labelFields none\ longLabel H1 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF468JZD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF109AZU ENCSR000DUU Peak bigBed 5 Fibroblast of mammary gland female CTCF peak 4 270 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/34b6daf3-a8b2-45aa-9249-fce210f775a7/ENCFF109AZU.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of mammary gland female CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUU Peak\ track wgEncodeReg4Epigenetics_ENCFF109AZU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF775ADT ENCSR194HVU - strand bigWig Spleen tissue female adult (51 years) - strand total RNA-seq signal 2 270 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/27d7bfdd-0668-4204-93d5-f0b60b4f7b4f/ENCFF775ADT.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR194HVU - strand\ track wgEncodeReg4RnaSeq_ENCFF775ADT\ type bigWig\ visibility full\ encTfChipPkENCFF062WBN H1-hESC RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in H1-hESC from ENCODE 3 (ENCFF062WBN) 0 270 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RFX5 in H1-hESC from ENCODE 3 (ENCFF062WBN)\ parent encTfChipPk off\ shortLabel H1-hESC RFX5\ subGroups cellType=H1-hESC factor=RFX5\ track encTfChipPkENCFF062WBN\ wgEncodeRegDnaseUwMonocytescd14ro01746Signal Monocyte-CD14+ Sg bigWig 0 853.111 Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE 0 270 85 135 255 170 195 255 0 0 0 regulation 1 color 85,135,255\ longLabel Monocytes-CD14+_RO01746 monocyte, CD14+ DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel Monocyte-CD14+ Sg\ subGroups view=c_Signal cellType=Monocytes_CD14_RO01746 treatment=n_a tissue=blood cancer=normal\ track wgEncodeRegDnaseUwMonocytescd14ro01746Signal\ type bigWig 0 853.111\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_rev Tc:ARPE-19Emt_00hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse 0 270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_rev Tc:ARPE-19Emt_00hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse 1 270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep2.CNhs14464.13626-146H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep2_CNhs14464_13626-146H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13626-146H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep2_CNhs14464_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13626-146H8\ urlLabel FANTOM5 Details:\ ENCFF227NGR ENCFF227NGR bigWig Caco-2: (5) CTCF, ENCFF227NGR 2 271 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF227NGR.bw\ color 0,176,240\ longLabel Caco-2: (5) CTCF, ENCFF227NGR\ maxHeightPixels 30\ parent CTCF_view off\ priority 18.4\ shortLabel ENCFF227NGR\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=Caco-2 biosampleType=cell_line donor=ENCDO000ACR dataType=typeCtcf\ track ENCFF227NGR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF740VNX ENCSR000BKP Signal bigWig H1 JUND ENCSR000BKP signal 2 271 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ce874674-6223-4530-8757-74ec51cd47dd/ENCFF740VNX.bigWig\ color 118,158,101\ longLabel H1 JUND ENCSR000BKP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKP Signal\ track wgEncodeReg4TfChip_ENCFF740VNX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF506VAR ENCSR000DUU Signal bigWig Fibroblast of mammary gland female CTCF signal 2 271 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a61bff74-5233-48ee-9528-ab20fadaf979/ENCFF506VAR.bigWig\ color 0,176,240\ longLabel Fibroblast of mammary gland female CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUU Signal\ track wgEncodeReg4Epigenetics_ENCFF506VAR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF654LYX ENCSR196KBV + strand bigWig T-cell female adult (21 years) + strand total RNA-seq signal 2 271 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/56582cd2-8292-4c11-b27a-ea8086e697cb/ENCFF654LYX.bigWig\ color 254,75,173\ longLabel T-cell female adult (21 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR196KBV + strand\ track wgEncodeReg4RnaSeq_ENCFF654LYX\ type bigWig\ visibility full\ encTfChipPkENCFF283MNG H1-hESC RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in H1-hESC from ENCODE 3 (ENCFF283MNG) 0 271 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RNF2 in H1-hESC from ENCODE 3 (ENCFF283MNG)\ parent encTfChipPk off\ shortLabel H1-hESC RNF2\ subGroups cellType=H1-hESC factor=RNF2\ track encTfChipPkENCFF283MNG\ wgEncodeRegDnaseUwHl60Signal HL-60 Sg bigWig 0 5012.92 HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 271 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel HL-60 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HL-60 Sg\ subGroups view=c_Signal cellType=HL-60 treatment=n_a tissue=blood cancer=cancer\ track wgEncodeRegDnaseUwHl60Signal\ type bigWig 0 5012.92\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_fwd Tc:ARPE-19Emt_00hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward 0 271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_fwd Tc:ARPE-19Emt_00hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward 1 271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ENCFF626YRZ ENCFF626YRZ bigWig Transverse colon, female adult (51 years): (5) CTCF, ENCFF626YRZ 2 272 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF626YRZ.bw\ color 0,176,240\ longLabel Transverse colon, female adult (51 years): (5) CTCF, ENCFF626YRZ\ maxHeightPixels 30\ parent CTCF_view off\ priority 158.4\ shortLabel ENCFF626YRZ\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=transverse_colon-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF626YRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF688UQG ENCSR000BKQ Peak bigBed 5 K562 ETS1 peaks 4 272 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/6fda1aad-6aee-4ded-8d94-1cdb4bf8fdac/ENCFF688UQG.bigBed\ labelFields none\ longLabel K562 ETS1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF688UQG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF469VPI ENCSR000DUW Peak bigBed 5 Fibroblast of mammary gland female H3K4me3 peak 4 272 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/121b51a0-327e-49ad-9af2-b62441fc814f/ENCFF469VPI.bigBed\ color 255,0,0\ longLabel Fibroblast of mammary gland female H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUW Peak\ track wgEncodeReg4Epigenetics_ENCFF469VPI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF127VSW ENCSR196KBV - strand bigWig T-cell female adult (21 years) - strand total RNA-seq signal 2 272 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/696bb528-0c02-4144-9bd7-e3f0167058cb/ENCFF127VSW.bigWig\ color 254,75,173\ longLabel T-cell female adult (21 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR196KBV - strand\ track wgEncodeReg4RnaSeq_ENCFF127VSW\ type bigWig\ visibility full\ encTfChipPkENCFF430SIE H1-hESC RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in H1-hESC from ENCODE 3 (ENCFF430SIE) 0 272 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in H1-hESC from ENCODE 3 (ENCFF430SIE)\ parent encTfChipPk off\ shortLabel H1-hESC RXRA\ subGroups cellType=H1-hESC factor=RXRA\ track encTfChipPkENCFF430SIE\ wgEncodeRegDnaseUwNb4Signal NB4 Sg bigWig 0 7662.2 NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE 0 272 85 112 255 170 183 255 0 0 0 regulation 1 color 85,112,255\ longLabel NB4 acute promyelocytic leukemia (APL) cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel NB4 Sg\ subGroups view=c_Signal cellType=NB4 treatment=n_a tissue=bone_marrow cancer=cancer\ track wgEncodeRegDnaseUwNb4Signal\ type bigWig 0 7662.2\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_rev Tc:ARPE-19Emt_00hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse 0 272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_rev Tc:ARPE-19Emt_00hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse 1 272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr00min%2c%20biol_rep3.CNhs14465.13627-146H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr00min, biol_rep3_CNhs14465_13627-146H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13627-146H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr00minBiolRep3_CNhs14465_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13627-146H9\ urlLabel FANTOM5 Details:\ ENCFF435CDF ENCFF435CDF bigWig Transverse colon, male adult (54 years): (5) CTCF, ENCFF435CDF 2 273 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF435CDF.bw\ color 0,176,240\ longLabel Transverse colon, male adult (54 years): (5) CTCF, ENCFF435CDF\ maxHeightPixels 30\ parent CTCF_view off\ priority 161.4\ shortLabel ENCFF435CDF\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=transverse_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF435CDF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF063WBM ENCSR000BKQ Signal bigWig K562 ETS1 ENCSR000BKQ signal 2 273 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/ce2fc245-84ef-4c1b-8468-9df2f42125da/ENCFF063WBM.bigWig\ color 254,75,173\ longLabel K562 ETS1 ENCSR000BKQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKQ Signal\ track wgEncodeReg4TfChip_ENCFF063WBM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF083EZT ENCSR000DUW Signal bigWig Fibroblast of mammary gland female H3K4me3 signal 2 273 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/2b33cb36-85fe-4d25-ae9b-f88efc41239f/ENCFF083EZT.bigWig\ color 255,0,0\ longLabel Fibroblast of mammary gland female H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUW Signal\ track wgEncodeReg4Epigenetics_ENCFF083EZT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF859QIP ENCSR197GCF + strand bigWig Heart right ventricle tissue male adult (54 years) + strand total RNA-seq signal 2 273 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/69f50d8c-f1d0-4dc2-bc21-565b72a2b47f/ENCFF859QIP.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR197GCF + strand\ track wgEncodeReg4RnaSeq_ENCFF859QIP\ type bigWig\ visibility full\ encTfChipPkENCFF193TFR H1-hESC SAP30 narrowPeak Transcription Factor ChIP-seq Peaks of SAP30 in H1-hESC from ENCODE 3 (ENCFF193TFR) 0 273 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SAP30 in H1-hESC from ENCODE 3 (ENCFF193TFR)\ parent encTfChipPk off\ shortLabel H1-hESC SAP30\ subGroups cellType=H1-hESC factor=SAP30\ track encTfChipPkENCFF193TFR\ wgEncodeRegDnaseUwH7hescSignal H7-ES Sg bigWig 0 13035.4 H7-hESC embryonic stem cell DNaseI Signal from ENCODE 0 273 85 93 255 170 174 255 0 0 0 regulation 1 color 85,93,255\ longLabel H7-hESC embryonic stem cell DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel H7-ES Sg\ subGroups view=c_Signal cellType=H7-hESC treatment=n_a tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescSignal\ type bigWig 0 13035.4\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_fwd Tc:ARPE-19Emt_00hr15minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward 0 273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_fwd Tc:ARPE-19Emt_00hr15minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward 1 273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ENCFF634JUC ENCFF634JUC bigWig Sigmoid colon, male adult (54 years): (5) CTCF, ENCFF634JUC 2 274 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF634JUC.bw\ color 0,176,240\ longLabel Sigmoid colon, male adult (54 years): (5) CTCF, ENCFF634JUC\ maxHeightPixels 30\ parent CTCF_view off\ priority 137.4\ shortLabel ENCFF634JUC\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=sigmoid_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF634JUC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF514URW ENCSR000BKR Peak bigBed 5 K562 POLR2AphosphoS5 peaks 4 274 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e5def8f9-be22-4262-94ad-cddb6e1f1fe0/ENCFF514URW.bigBed\ labelFields none\ longLabel K562 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF514URW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF742RSV ENCSR000DUX Peak bigBed 5 Fibroblast of pulmonary artery CTCF peak 4 274 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/0d66d38f-2c2c-4251-b2d2-8413b9b2c735/ENCFF742RSV.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of pulmonary artery CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUX Peak\ track wgEncodeReg4Epigenetics_ENCFF742RSV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF377GVX ENCSR197GCF - strand bigWig Heart right ventricle tissue male adult (54 years) - strand total RNA-seq signal 2 274 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/514372b6-f1dd-4b01-b720-01156ef9b369/ENCFF377GVX.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR197GCF - strand\ track wgEncodeReg4RnaSeq_ENCFF377GVX\ type bigWig\ visibility full\ encTfChipPkENCFF905VZD H1-hESC SIN3A 1 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF905VZD) 0 274 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF905VZD)\ parent encTfChipPk off\ shortLabel H1-hESC SIN3A 1\ subGroups cellType=H1-hESC factor=SIN3A\ track encTfChipPkENCFF905VZD\ wgEncodeRegDnaseUwH7hescDiffprota5dSignal H7-ES diff 5d Sg bigWig 0 5836.88 H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE 0 274 85 88 255 170 171 255 0 0 0 regulation 1 color 85,88,255\ longLabel H7-hESC embryonic stem cell (diff 5d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel H7-ES diff 5d Sg\ subGroups view=c_Signal cellType=H7-hESC treatment=diffProtA_5d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota5dSignal\ type bigWig 0 5836.88\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_rev Tc:ARPE-19Emt_00hr15minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse 0 274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_rev Tc:ARPE-19Emt_00hr15minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse 1 274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep1.CNhs14466.13628-146I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep1_CNhs14466_13628-146I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13628-146I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep1_CNhs14466_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13628-146I1\ urlLabel FANTOM5 Details:\ ENCFF546ZNQ ENCFF546ZNQ bigWig Colonic mucosa, female adult (41 years): (5) CTCF, ENCFF546ZNQ 2 275 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF546ZNQ.bw\ color 0,176,240\ longLabel Colonic mucosa, female adult (41 years): (5) CTCF, ENCFF546ZNQ\ maxHeightPixels 30\ parent CTCF_view off\ priority 22.4\ shortLabel ENCFF546ZNQ\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=colonic_mucosa-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCtcf\ track ENCFF546ZNQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF491WAE ENCSR000BKS Peak bigBed 5 K562 TAF1 peaks 4 275 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/6c3840d8-dbe5-4245-86d1-67c3a7068ab4/ENCFF491WAE.bigBed\ labelFields none\ longLabel K562 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF491WAE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF240OTM ENCSR000DUX Signal bigWig Fibroblast of pulmonary artery CTCF signal 2 275 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/815e6e4a-1162-48dd-b6e1-744ca951e931/ENCFF240OTM.bigWig\ color 0,176,240\ longLabel Fibroblast of pulmonary artery CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUX Signal\ track wgEncodeReg4Epigenetics_ENCFF240OTM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF424DIT ENCSR198QAJ + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 275 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/f1ab573a-3100-47c2-a669-d26453e8ee4b/ENCFF424DIT.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR198QAJ + strand\ track wgEncodeReg4RnaSeq_ENCFF424DIT\ type bigWig\ visibility full\ encTfChipPkENCFF514BGQ H1-hESC SIN3A 2 narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF514BGQ) 0 275 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIN3A in H1-hESC from ENCODE 3 (ENCFF514BGQ)\ parent encTfChipPk off\ shortLabel H1-hESC SIN3A 2\ subGroups cellType=H1-hESC factor=SIN3A\ track encTfChipPkENCFF514BGQ\ wgEncodeRegDnaseUwH7hescDiffprota14dSignal H7-ES diff 14d Sg bigWig 0 21393.7 H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE 0 275 89 85 255 172 170 255 0 0 0 regulation 1 color 89,85,255\ longLabel H7-hESC embryonic stem cell (diff 14d) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel H7-ES diff 14d Sg\ subGroups view=c_Signal cellType=H7-hESC treatment=diffProtA_14d tissue=embryo cancer=unknown\ track wgEncodeRegDnaseUwH7hescDiffprota14dSignal\ type bigWig 0 21393.7\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_fwd Tc:ARPE-19Emt_00hr15minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward 0 275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_fwd Tc:ARPE-19Emt_00hr15minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward 1 275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ENCFF154FOF ENCFF154FOF bigWig Sigmoid colon, female adult (53 years): (5) CTCF, ENCFF154FOF 2 276 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF154FOF.bw\ color 0,176,240\ longLabel Sigmoid colon, female adult (53 years): (5) CTCF, ENCFF154FOF\ maxHeightPixels 30\ parent CTCF_view off\ priority 136.4\ shortLabel ENCFF154FOF\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=sigmoid_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF154FOF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF633EZB ENCSR000BKT Peak bigBed 5 K562 USF1 peaks 4 276 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/a505a9fc-2a85-45be-a76e-6cbb7881ddc4/ENCFF633EZB.bigBed\ labelFields none\ longLabel K562 USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF633EZB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF364WSS ENCSR000DUZ Peak bigBed 5 Fibroblast of pulmonary artery H3K4me3 peak 4 276 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/1d34ce86-7a8b-4a33-8dc9-b0cef42f7176/ENCFF364WSS.bigBed\ color 255,0,0\ longLabel Fibroblast of pulmonary artery H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUZ Peak\ track wgEncodeReg4Epigenetics_ENCFF364WSS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF714APG ENCSR198QAJ - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 276 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/8fa90117-31cf-46a6-a47b-03f90d28b370/ENCFF714APG.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR198QAJ - strand\ track wgEncodeReg4RnaSeq_ENCFF714APG\ type bigWig\ visibility full\ encTfChipPkENCFF539KSF H1-hESC SIRT6 narrowPeak Transcription Factor ChIP-seq Peaks of SIRT6 in H1-hESC from ENCODE 3 (ENCFF539KSF) 0 276 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIRT6 in H1-hESC from ENCODE 3 (ENCFF539KSF)\ parent encTfChipPk off\ shortLabel H1-hESC SIRT6\ subGroups cellType=H1-hESC factor=SIRT6\ track encTfChipPkENCFF539KSF\ wgEncodeRegDnaseUwRptecSignal RPTEC Sg bigWig 0 22767.8 RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE 0 276 100 85 255 177 170 255 0 0 0 regulation 1 color 100,85,255\ longLabel RPTEC renal proximal tubule epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel RPTEC Sg\ subGroups view=c_Signal cellType=RPTEC treatment=n_a tissue=kidney cancer=normal\ track wgEncodeRegDnaseUwRptecSignal\ type bigWig 0 22767.8\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_rev Tc:ARPE-19Emt_00hr15minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse 0 276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_rev Tc:ARPE-19Emt_00hr15minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse 1 276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep2.CNhs14467.13629-146I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep2_CNhs14467_13629-146I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13629-146I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep2_CNhs14467_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13629-146I2\ urlLabel FANTOM5 Details:\ ENCFF493XMW ENCFF493XMW bigWig Transverse colon, female adult (53 years): (5) CTCF, ENCFF493XMW 2 277 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF493XMW.bw\ color 0,176,240\ longLabel Transverse colon, female adult (53 years): (5) CTCF, ENCFF493XMW\ maxHeightPixels 30\ parent CTCF_view off\ priority 159.4\ shortLabel ENCFF493XMW\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=transverse_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF493XMW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF095DZT ENCSR000BKT Signal bigWig K562 USF1 ENCSR000BKT signal 2 277 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/b751d6aa-971f-4e9b-8a96-fec376ea53c3/ENCFF095DZT.bigWig\ color 254,75,173\ longLabel K562 USF1 ENCSR000BKT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKT Signal\ track wgEncodeReg4TfChip_ENCFF095DZT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF288WIX ENCSR000DUZ Signal bigWig Fibroblast of pulmonary artery H3K4me3 signal 2 277 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/418a2386-a78b-4f95-b103-dc9796e2aa12/ENCFF288WIX.bigWig\ color 255,0,0\ longLabel Fibroblast of pulmonary artery H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DUZ Signal\ track wgEncodeReg4Epigenetics_ENCFF288WIX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF999JRR ENCSR198TKA + strand bigWig Mesangial cell NONE and female embryo (21 weeks) + strand total RNA-seq signal 2 277 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/39092529-0e94-4ecd-a591-b5acf13c11fb/ENCFF999JRR.bigWig\ color 92,161,153\ longLabel Mesangial cell NONE and female embryo (21 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR198TKA + strand\ track wgEncodeReg4RnaSeq_ENCFF999JRR\ type bigWig\ visibility full\ encTfChipPkENCFF644BNN H1-hESC SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in H1-hESC from ENCODE 3 (ENCFF644BNN) 0 277 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SIX5 in H1-hESC from ENCODE 3 (ENCFF644BNN)\ parent encTfChipPk off\ shortLabel H1-hESC SIX5\ subGroups cellType=H1-hESC factor=SIX5\ track encTfChipPkENCFF644BNN\ wgEncodeRegDnaseUwHrpepicSignal HRPEpiC Sg bigWig 0 32404.6 HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE 0 277 124 85 255 189 170 255 0 0 0 regulation 1 color 124,85,255\ longLabel HRPEpiC retinal pigment epithelium DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HRPEpiC Sg\ subGroups view=c_Signal cellType=HRPEpiC treatment=n_a tissue=eye cancer=normal\ track wgEncodeRegDnaseUwHrpepicSignal\ type bigWig 0 32404.6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_fwd Tc:ARPE-19Emt_00hr15minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward 0 277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_fwd Tc:ARPE-19Emt_00hr15minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward 1 277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ENCFF646EZE ENCFF646EZE bigWig Transverse colon, male adult (37 years): (5) CTCF, ENCFF646EZE 2 278 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF646EZE.bw\ color 0,176,240\ longLabel Transverse colon, male adult (37 years): (5) CTCF, ENCFF646EZE\ maxHeightPixels 30\ parent CTCF_view off\ priority 160.4\ shortLabel ENCFF646EZE\ subGroups organ=large_intestine view=CTCF_view simpleBiosample=transverse_colon-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF646EZE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF199FNC ENCSR000BKU Peak bigBed 5 K562 YY1 peaks 4 278 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/77239144-32bf-4f20-88d0-e40e2b6f0637/ENCFF199FNC.bigBed\ labelFields none\ longLabel K562 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF199FNC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF505HVQ ENCSR000DVA Peak bigBed 5 Fibroblast of lung CTCF peak 4 278 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/c8d81b64-2ca2-4ee4-882a-dd1a082c0fab/ENCFF505HVQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of lung CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVA Peak\ track wgEncodeReg4Epigenetics_ENCFF505HVQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF497JYE ENCSR198TKA - strand bigWig Mesangial cell NONE and female embryo (21 weeks) - strand total RNA-seq signal 2 278 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/08ffdf83-41bd-4c87-a118-117a6e7925ff/ENCFF497JYE.bigWig\ color 92,161,153\ longLabel Mesangial cell NONE and female embryo (21 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR198TKA - strand\ track wgEncodeReg4RnaSeq_ENCFF497JYE\ type bigWig\ visibility full\ encTfChipPkENCFF500JFI H1-hESC SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in H1-hESC from ENCODE 3 (ENCFF500JFI) 0 278 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in H1-hESC from ENCODE 3 (ENCFF500JFI)\ parent encTfChipPk off\ shortLabel H1-hESC SP1\ subGroups cellType=H1-hESC factor=SP1\ track encTfChipPkENCFF500JFI\ wgEncodeRegDnaseUwHmvecdlyadSignal HMVEC-dLy-Ad Sg bigWig 0 39771.9 HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE 0 278 133 85 255 194 170 255 0 0 0 regulation 1 color 133,85,255\ longLabel HMVEC-dLy-Ad dermal MV endothelial cell, lymph DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel HMVEC-dLy-Ad Sg\ subGroups view=c_Signal cellType=HMVEC-dLy-Ad treatment=n_a tissue=blood_vessel cancer=normal\ track wgEncodeRegDnaseUwHmvecdlyadSignal\ type bigWig 0 39771.9\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_rev Tc:ARPE-19Emt_00hr15minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse 0 278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_rev Tc:ARPE-19Emt_00hr15minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse 1 278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr15min%2c%20biol_rep3.CNhs14468.13630-146I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr15min, biol_rep3_CNhs14468_13630-146I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13630-146I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr15minBiolRep3_CNhs14468_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13630-146I3\ urlLabel FANTOM5 Details:\ ENCFF357NFO ENCFF357NFO bigWig HepG2: (5) CTCF, ENCFF357NFO 2 279 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF357NFO.bw\ color 0,176,240\ longLabel HepG2: (5) CTCF, ENCFF357NFO\ maxHeightPixels 30\ parent CTCF_view off\ priority 54.4\ shortLabel ENCFF357NFO\ subGroups organ=liver view=CTCF_view simpleBiosample=HepG2 biosampleType=cell_line donor=ENCDO000AAC dataType=typeCtcf\ track ENCFF357NFO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF157ZKE ENCSR000BKU Signal bigWig K562 YY1 ENCSR000BKU signal 2 279 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/e875c2b5-e853-49ff-96de-34930f7e12e7/ENCFF157ZKE.bigWig\ color 254,75,173\ longLabel K562 YY1 ENCSR000BKU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKU Signal\ track wgEncodeReg4TfChip_ENCFF157ZKE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF004BWD ENCSR000DVA Signal bigWig Fibroblast of lung CTCF signal 2 279 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/024c5679-8b3d-4ed6-8c27-20525e4c22d3/ENCFF004BWD.bigWig\ color 0,176,240\ longLabel Fibroblast of lung CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVA Signal\ track wgEncodeReg4Epigenetics_ENCFF004BWD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF290PRJ ENCSR201XOZ + strand bigWig Adrenal gland tissue female child (16 years) + strand total RNA-seq signal 2 279 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/afe08d4c-bb4f-4ed4-9b13-68b97bab8b8f/ENCFF290PRJ.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female child (16 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR201XOZ + strand\ track wgEncodeReg4RnaSeq_ENCFF290PRJ\ type bigWig\ visibility full\ encTfChipPkENCFF345IDL H1-hESC SRF narrowPeak Transcription Factor ChIP-seq Peaks of SRF in H1-hESC from ENCODE 3 (ENCFF345IDL) 0 279 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SRF in H1-hESC from ENCODE 3 (ENCFF345IDL)\ parent encTfChipPk off\ shortLabel H1-hESC SRF\ subGroups cellType=H1-hESC factor=SRF\ track encTfChipPkENCFF345IDL\ wgEncodeRegDnaseUwHelas3Signal HeLa-S3 Sg bigWig 0 26492 HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE 0 279 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel HeLa-S3 cervical epithelial adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal on\ shortLabel HeLa-S3 Sg\ subGroups view=c_Signal cellType=HeLa-S3 treatment=n_a tissue=cervix cancer=cancer\ track wgEncodeRegDnaseUwHelas3Signal\ type bigWig 0 26492\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_fwd Tc:ARPE-19Emt_00hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward 0 279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_fwd Tc:ARPE-19Emt_00hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward 1 279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ENCFF491FMJ ENCFF491FMJ bigWig Hepatocyte, female embryo (5 days): (5) CTCF, ENCFF491FMJ 2 280 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF491FMJ.bw\ color 0,176,240\ longLabel Hepatocyte, female embryo (5 days): (5) CTCF, ENCFF491FMJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 53.4\ shortLabel ENCFF491FMJ\ subGroups organ=liver view=CTCF_view simpleBiosample=hepatocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF491FMJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF169SQI ENCSR000BKV Peak bigBed 5 K562 RAD21 peaks 4 280 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/cc651d78-fc55-478e-8d29-f338e9e54bf2/ENCFF169SQI.bigBed\ labelFields none\ longLabel K562 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF169SQI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF165MGS ENCSR000DVC Peak bigBed 5 Fibroblast of lung H3K4me3 peak 4 280 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/2df1bc76-991f-43c0-b43b-4969abb6cf2f/ENCFF165MGS.bigBed\ color 255,0,0\ longLabel Fibroblast of lung H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVC Peak\ track wgEncodeReg4Epigenetics_ENCFF165MGS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF272FSE ENCSR201XOZ - strand bigWig Adrenal gland tissue female child (16 years) - strand total RNA-seq signal 2 280 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/0a0ee5b1-7ad9-45f9-8f50-9c6a448bad6f/ENCFF272FSE.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female child (16 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR201XOZ - strand\ track wgEncodeReg4RnaSeq_ENCFF272FSE\ type bigWig\ visibility full\ encTfChipPkENCFF671SZQ H1-hESC SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in H1-hESC from ENCODE 3 (ENCFF671SZQ) 0 280 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in H1-hESC from ENCODE 3 (ENCFF671SZQ)\ parent encTfChipPk off\ shortLabel H1-hESC SUZ12\ subGroups cellType=H1-hESC factor=SUZ12\ track encTfChipPkENCFF671SZQ\ wgEncodeRegDnaseUwSknmcSignal SK-N-MC Sg bigWig 0 5864.79 SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE 0 280 176 85 255 215 170 255 0 0 0 regulation 1 color 176,85,255\ longLabel SK-N-MC neuroepithelioma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel SK-N-MC Sg\ subGroups view=c_Signal cellType=SK-N-MC treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwSknmcSignal\ type bigWig 0 5864.79\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_rev Tc:ARPE-19Emt_00hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse 0 280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_rev Tc:ARPE-19Emt_00hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse 1 280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep1.CNhs14469.13631-146I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep1_CNhs14469_13631-146I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13631-146I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep1_CNhs14469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13631-146I4\ urlLabel FANTOM5 Details:\ ENCFF005YBS ENCFF005YBS bigWig Right lobe of liver, female adult (53 years): (5) CTCF, ENCFF005YBS 2 281 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF005YBS.bw\ color 0,176,240\ longLabel Right lobe of liver, female adult (53 years): (5) CTCF, ENCFF005YBS\ maxHeightPixels 30\ parent CTCF_view on\ priority 135.4\ shortLabel ENCFF005YBS\ subGroups organ=liver view=CTCF_view simpleBiosample=right_lobe_of_liver-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF005YBS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF652NKM ENCSR000BKV Signal bigWig K562 RAD21 ENCSR000BKV signal 2 281 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/350c2f09-9d67-47b9-a68a-d07dcc196b26/ENCFF652NKM.bigWig\ color 254,75,173\ longLabel K562 RAD21 ENCSR000BKV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BKV Signal\ track wgEncodeReg4TfChip_ENCFF652NKM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF847AMK ENCSR000DVC Signal bigWig Fibroblast of lung H3K4me3 signal 2 281 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/bf90caf6-27f5-402c-b091-d4b9b8803555/ENCFF847AMK.bigWig\ color 255,0,0\ longLabel Fibroblast of lung H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVC Signal\ track wgEncodeReg4Epigenetics_ENCFF847AMK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF767NPP ENCSR202OWR + strand bigWig Colonic mucosa tissue female adult (41 years) + strand total RNA-seq signal 2 281 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/4c7e99b4-c9b7-44d0-908c-01d7988163fc/ENCFF767NPP.bigWig\ color 86,86,36\ longLabel Colonic mucosa tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR202OWR + strand\ track wgEncodeReg4RnaSeq_ENCFF767NPP\ type bigWig\ visibility full\ encTfChipPkENCFF870SFJ H1-hESC TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in H1-hESC from ENCODE 3 (ENCFF870SFJ) 0 281 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in H1-hESC from ENCODE 3 (ENCFF870SFJ)\ parent encTfChipPk off\ shortLabel H1-hESC TAF1\ subGroups cellType=H1-hESC factor=TAF1\ track encTfChipPkENCFF870SFJ\ wgEncodeRegDnaseUwMcf7Signal MCF-7 Sg bigWig 0 15780.8 MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE 0 281 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel MCF-7 Sg\ subGroups view=c_Signal cellType=MCF-7 treatment=n_a tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Signal\ type bigWig 0 15780.8\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_fwd Tc:ARPE-19Emt_00hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward 0 281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_fwd Tc:ARPE-19Emt_00hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward 1 281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ENCFF105FHL ENCFF105FHL bigWig IMR-90: (5) CTCF, ENCFF105FHL 2 282 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF105FHL.bw\ color 0,176,240\ longLabel IMR-90: (5) CTCF, ENCFF105FHL\ maxHeightPixels 30\ parent CTCF_view off\ priority 57.4\ shortLabel ENCFF105FHL\ subGroups organ=lung view=CTCF_view simpleBiosample=IMR-90 biosampleType=cell_line donor=ENCDO000AAX dataType=typeCtcf\ track ENCFF105FHL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF698EWO ENCSR000BLD Peak bigBed 5 H1 RAD21 peaks 4 282 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/2c30ade0-4a9a-4968-a36a-b52c57c8cc2a/ENCFF698EWO.bigBed\ labelFields none\ longLabel H1 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF698EWO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF364UIB ENCSR000DVG Peak bigBed 5 Kidney epithelial cell H3K4me3 peak 4 282 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/899fcbce-bc1e-4923-bdb5-5d63cf2740e7/ENCFF364UIB.bigBed\ color 255,0,0\ longLabel Kidney epithelial cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVG Peak\ track wgEncodeReg4Epigenetics_ENCFF364UIB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF317NMC ENCSR202OWR - strand bigWig Colonic mucosa tissue female adult (41 years) - strand total RNA-seq signal 2 282 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/ffd1357f-a6e3-418a-b8a3-ac6b6bf4a52b/ENCFF317NMC.bigWig\ color 86,86,36\ longLabel Colonic mucosa tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR202OWR - strand\ track wgEncodeReg4RnaSeq_ENCFF317NMC\ type bigWig\ visibility full\ encTfChipPkENCFF243PSJ H1-hESC TAF7 narrowPeak Transcription Factor ChIP-seq Peaks of TAF7 in H1-hESC from ENCODE 3 (ENCFF243PSJ) 0 282 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF7 in H1-hESC from ENCODE 3 (ENCFF243PSJ)\ parent encTfChipPk off\ shortLabel H1-hESC TAF7\ subGroups cellType=H1-hESC factor=TAF7\ track encTfChipPkENCFF243PSJ\ wgEncodeRegDnaseUwMcf7Estradiolctrl0hrSignal MCF-7 estr 0h Sg bigWig 0 23308.2 MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE 0 282 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 0h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel MCF-7 estr 0h Sg\ subGroups view=c_Signal cellType=MCF-7 treatment=Estradiol_ctrl_0hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiolctrl0hrSignal\ type bigWig 0 23308.2\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_rev Tc:ARPE-19Emt_00hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse 0 282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_rev Tc:ARPE-19Emt_00hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse 1 282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep2.CNhs14470.13632-146I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep2_CNhs14470_13632-146I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13632-146I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep2_CNhs14470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13632-146I5\ urlLabel FANTOM5 Details:\ ENCFF766VDL ENCFF766VDL bigWig AG04450: (5) CTCF, ENCFF766VDL 2 283 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF766VDL.bw\ color 0,176,240\ longLabel AG04450: (5) CTCF, ENCFF766VDL\ maxHeightPixels 30\ parent CTCF_view off\ priority 7.4\ shortLabel ENCFF766VDL\ subGroups organ=lung view=CTCF_view simpleBiosample=AG04450 biosampleType=cell_line donor=ENCDO001AAA dataType=typeCtcf\ track ENCFF766VDL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF506AAX ENCSR000BLD Signal bigWig H1 RAD21 ENCSR000BLD signal 2 283 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/e016f546-a448-4fe5-ad31-e30399f3b8ca/ENCFF506AAX.bigWig\ color 118,158,101\ longLabel H1 RAD21 ENCSR000BLD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLD Signal\ track wgEncodeReg4TfChip_ENCFF506AAX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF786SRS ENCSR000DVG Signal bigWig Kidney epithelial cell H3K4me3 signal 2 283 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/64f23277-9a74-4bd6-923a-633a16716052/ENCFF786SRS.bigWig\ color 255,0,0\ longLabel Kidney epithelial cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVG Signal\ track wgEncodeReg4Epigenetics_ENCFF786SRS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF651UKQ ENCSR209TIR + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 283 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/fda48273-e2cc-4a5b-be62-59609b102a05/ENCFF651UKQ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR209TIR + strand\ track wgEncodeReg4RnaSeq_ENCFF651UKQ\ type bigWig\ visibility full\ encTfChipPkENCFF748YXF H1-hESC TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in H1-hESC from ENCODE 3 (ENCFF748YXF) 0 283 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TBP in H1-hESC from ENCODE 3 (ENCFF748YXF)\ parent encTfChipPk off\ shortLabel H1-hESC TBP\ subGroups cellType=H1-hESC factor=TBP\ track encTfChipPkENCFF748YXF\ wgEncodeRegDnaseUwMcf7Estradiol100nm1hrSignal MCF-7 estr 1h Sg bigWig 0 24234.6 MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE 0 283 192 85 255 223 170 255 0 0 0 regulation 1 color 192,85,255\ longLabel MCF-7 mammary adenocarcinoma cell line (estradi 1h) DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel MCF-7 estr 1h Sg\ subGroups view=c_Signal cellType=MCF-7 treatment=Estradiol_100nM_1hr tissue=breast cancer=cancer\ track wgEncodeRegDnaseUwMcf7Estradiol100nm1hrSignal\ type bigWig 0 24234.6\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_fwd Tc:ARPE-19Emt_00hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward 0 283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_fwd Tc:ARPE-19Emt_00hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward 1 283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ ENCFF936QRH ENCFF936QRH bigWig PC-9: (5) CTCF, ENCFF936QRH 2 284 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF936QRH.bw\ color 0,176,240\ longLabel PC-9: (5) CTCF, ENCFF936QRH\ maxHeightPixels 30\ parent CTCF_view off\ priority 126.4\ shortLabel ENCFF936QRH\ subGroups organ=lung view=CTCF_view simpleBiosample=PC-9 biosampleType=cell_line donor=ENCDO647UHQ dataType=typeCtcf\ track ENCFF936QRH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF207NVJ ENCSR000BLE Peak bigBed 5 HepG2 FOXA1 peaks 4 284 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/634d1bc4-49c9-45f9-afc2-6ad7a6526d92/ENCFF207NVJ.bigBed\ labelFields none\ longLabel HepG2 FOXA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF207NVJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF173LWY ENCSR000DVH Peak bigBed 5 Kidney epithelial cell CTCF peak 4 284 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/19f5ee17-643a-4c94-a555-1469fb813d8e/ENCFF173LWY.bigBed\ color 0,176,240\ labelFields none\ longLabel Kidney epithelial cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVH Peak\ track wgEncodeReg4Epigenetics_ENCFF173LWY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF844ADU ENCSR209TIR - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 284 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/18e02cf3-76f4-452a-863e-a9a2f3617f7c/ENCFF844ADU.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR209TIR - strand\ track wgEncodeReg4RnaSeq_ENCFF844ADU\ type bigWig\ visibility full\ encTfChipPkENCFF740HPV H1-hESC TCF12 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in H1-hESC from ENCODE 3 (ENCFF740HPV) 0 284 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TCF12 in H1-hESC from ENCODE 3 (ENCFF740HPV)\ parent encTfChipPk off\ shortLabel H1-hESC TCF12\ subGroups cellType=H1-hESC factor=TCF12\ track encTfChipPkENCFF740HPV\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_rev Tc:ARPE-19Emt_00hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse 0 284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_rev Tc:ARPE-19Emt_00hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse 1 284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr30min%2c%20biol_rep3.CNhs14471.13633-146I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr30min, biol_rep3_CNhs14471_13633-146I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13633-146I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr30minBiolRep3_CNhs14471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13633-146I6\ urlLabel FANTOM5 Details:\ wgEncodeRegDnaseUwWerirb1Signal WERI-Rb-1 Sg bigWig 0 8726.43 WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE 0 284 211 85 255 233 170 255 0 0 0 regulation 1 color 211,85,255\ longLabel WERI-Rb-1 retinoblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel WERI-Rb-1 Sg\ subGroups view=c_Signal cellType=WERI-Rb-1 treatment=n_a tissue=eye cancer=cancer\ track wgEncodeRegDnaseUwWerirb1Signal\ type bigWig 0 8726.43\ wgEncodeRegDnaseUwBe2cSignal BE2_C Sg bigWig 0 72865.5 BE2_C neuroblastoma cell line DNaseI Signal from ENCODE 0 285 237 85 255 246 170 255 0 0 0 regulation 1 color 237,85,255\ longLabel BE2_C neuroblastoma cell line DNaseI Signal from ENCODE\ parent wgEncodeRegDnaseSignal off\ shortLabel BE2_C Sg\ subGroups view=c_Signal cellType=BE2_C treatment=n_a tissue=brain cancer=cancer\ track wgEncodeRegDnaseUwBe2cSignal\ type bigWig 0 72865.5\ ENCFF468WUY ENCFF468WUY bigWig Upper lobe of left lung, female adult (51 years): (5) CTCF, ENCFF468WUY 2 285 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF468WUY.bw\ color 0,176,240\ longLabel Upper lobe of left lung, female adult (51 years): (5) CTCF, ENCFF468WUY\ maxHeightPixels 30\ parent CTCF_view off\ priority 163.4\ shortLabel ENCFF468WUY\ subGroups organ=lung view=CTCF_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF468WUY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF408EGB ENCSR000BLE Signal bigWig HepG2 FOXA1 ENCSR000BLE signal 2 285 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/7b8a29e3-dccb-4604-809d-85caa3e6073f/ENCFF408EGB.bigWig\ color 137,152,82\ longLabel HepG2 FOXA1 ENCSR000BLE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLE Signal\ track wgEncodeReg4TfChip_ENCFF408EGB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF518OZL ENCSR000DVH Signal bigWig Kidney epithelial cell CTCF signal 2 285 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/681309f7-86b0-4e6f-8eba-1a7136227591/ENCFF518OZL.bigWig\ color 0,176,240\ longLabel Kidney epithelial cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVH Signal\ track wgEncodeReg4Epigenetics_ENCFF518OZL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF654UYF ENCSR216RNR + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal 2 285 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/7ea7979c-e5c2-486d-a0c5-5b206c5744fc/ENCFF654UYF.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR216RNR + strand\ track wgEncodeReg4RnaSeq_ENCFF654UYF\ type bigWig\ visibility full\ encTfChipPkENCFF699HXL H1-hESC USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in H1-hESC from ENCODE 3 (ENCFF699HXL) 0 285 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF1 in H1-hESC from ENCODE 3 (ENCFF699HXL)\ parent encTfChipPk off\ shortLabel H1-hESC USF1\ subGroups cellType=H1-hESC factor=USF1\ track encTfChipPkENCFF699HXL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_fwd Tc:ARPE-19Emt_00hr45minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward 0 285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_fwd Tc:ARPE-19Emt_00hr45minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward 1 285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ENCFF002ZEZ ENCFF002ZEZ bigWig Left lung, male adult (40 years): (5) CTCF, ENCFF002ZEZ 2 286 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF002ZEZ.bw\ color 0,176,240\ longLabel Left lung, male adult (40 years): (5) CTCF, ENCFF002ZEZ\ maxHeightPixels 30\ parent CTCF_view off\ priority 61.4\ shortLabel ENCFF002ZEZ\ subGroups organ=lung view=CTCF_view simpleBiosample=left_lung-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeCtcf\ track ENCFF002ZEZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF669NAM ENCSR000BLF Peak bigBed 5 HepG2 HNF4A peaks 4 286 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/8b2f085e-bf57-46fd-881a-ad99e47c1221/ENCFF669NAM.bigBed\ labelFields none\ longLabel HepG2 HNF4A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF669NAM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF810AAG ENCSR000DVI Peak bigBed 5 Retinal pigment epithelial cell CTCF peak 4 286 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/d758deda-4259-4c57-8b38-cd88f02ca684/ENCFF810AAG.bigBed\ color 0,176,240\ labelFields none\ longLabel Retinal pigment epithelial cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVI Peak\ track wgEncodeReg4Epigenetics_ENCFF810AAG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF674YOS ENCSR216RNR - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal 2 286 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/423ca776-6ec6-4ada-95ce-a1918f0dfa13/ENCFF674YOS.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR216RNR - strand\ track wgEncodeReg4RnaSeq_ENCFF674YOS\ type bigWig\ visibility full\ encTfChipPkENCFF710JBU H1-hESC USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in H1-hESC from ENCODE 3 (ENCFF710JBU) 0 286 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF2 in H1-hESC from ENCODE 3 (ENCFF710JBU)\ parent encTfChipPk off\ shortLabel H1-hESC USF2\ subGroups cellType=H1-hESC factor=USF2\ track encTfChipPkENCFF710JBU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_rev Tc:ARPE-19Emt_00hr45minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse 0 286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_rev Tc:ARPE-19Emt_00hr45minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse 1 286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep1.CNhs14472.13634-146I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep1_CNhs14472_13634-146I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13634-146I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep1_CNhs14472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13634-146I7\ urlLabel FANTOM5 Details:\ ENCFF750ENA ENCFF750ENA bigWig Upper lobe of left lung, male adult (54 years): (5) CTCF, ENCFF750ENA 2 287 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF750ENA.bw\ color 0,176,240\ longLabel Upper lobe of left lung, male adult (54 years): (5) CTCF, ENCFF750ENA\ maxHeightPixels 30\ parent CTCF_view off\ priority 166.4\ shortLabel ENCFF750ENA\ subGroups organ=lung view=CTCF_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF750ENA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF677JAB ENCSR000BLF Signal bigWig HepG2 HNF4A ENCSR000BLF signal 2 287 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/0adb8af7-70e4-4c9f-b195-51910ccaf2da/ENCFF677JAB.bigWig\ color 137,152,82\ longLabel HepG2 HNF4A ENCSR000BLF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLF Signal\ track wgEncodeReg4TfChip_ENCFF677JAB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF313KFS ENCSR000DVI Signal bigWig Retinal pigment epithelial cell CTCF signal 2 287 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ec284e18-04b1-4234-ab5e-97e531572a92/ENCFF313KFS.bigWig\ color 0,176,240\ longLabel Retinal pigment epithelial cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVI Signal\ track wgEncodeReg4Epigenetics_ENCFF313KFS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF103EZF ENCSR226KML + strand bigWig Right lobe of liver tissue female adult (53 years) + strand total RNA-seq signal 2 287 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6e417814-5785-4f80-9456-96c3c7e21399/ENCFF103EZF.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq on\ shortLabel ENCSR226KML + strand\ track wgEncodeReg4RnaSeq_ENCFF103EZF\ type bigWig\ visibility full\ encTfChipPkENCFF509GYP H1-hESC YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in H1-hESC from ENCODE 3 (ENCFF509GYP) 0 287 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in H1-hESC from ENCODE 3 (ENCFF509GYP)\ parent encTfChipPk off\ shortLabel H1-hESC YY1\ subGroups cellType=H1-hESC factor=YY1\ track encTfChipPkENCFF509GYP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_fwd Tc:ARPE-19Emt_00hr45minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward 0 287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_fwd Tc:ARPE-19Emt_00hr45minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward 1 287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ENCFF812ODW ENCFF812ODW bigWig Lower lobe of left lung, male adult (60 years): (5) CTCF, ENCFF812ODW 2 288 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF812ODW.bw\ color 0,176,240\ longLabel Lower lobe of left lung, male adult (60 years): (5) CTCF, ENCFF812ODW\ maxHeightPixels 30\ parent CTCF_view off\ priority 64.4\ shortLabel ENCFF812ODW\ subGroups organ=lung view=CTCF_view simpleBiosample=lower_lobe_of_left_lung-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeCtcf\ track ENCFF812ODW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF136LTS ENCSR000BLI Peak bigBed 5 K562 E2F6 peaks 4 288 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f8441a32-b794-4a75-978a-9cfdff0d7cc8/ENCFF136LTS.bigBed\ labelFields none\ longLabel K562 E2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF136LTS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF763JFI ENCSR000DVK Peak bigBed 5 Retinal pigment epithelial cell H3K4me3 peak 4 288 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/4755e93b-540d-4b2f-b7d3-12e89df02d8e/ENCFF763JFI.bigBed\ color 255,0,0\ longLabel Retinal pigment epithelial cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVK Peak\ track wgEncodeReg4Epigenetics_ENCFF763JFI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF481ZPW ENCSR226KML - strand bigWig Right lobe of liver tissue female adult (53 years) - strand total RNA-seq signal 2 288 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/55649aa6-e655-40d7-bc42-f000e2132b61/ENCFF481ZPW.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq on\ shortLabel ENCSR226KML - strand\ track wgEncodeReg4RnaSeq_ENCFF481ZPW\ type bigWig\ visibility full\ encTfChipPkENCFF933WSP H1-hESC ZNF143 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in H1-hESC from ENCODE 3 (ENCFF933WSP) 0 288 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in H1-hESC from ENCODE 3 (ENCFF933WSP)\ parent encTfChipPk off\ shortLabel H1-hESC ZNF143\ subGroups cellType=H1-hESC factor=ZNF143\ track encTfChipPkENCFF933WSP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_rev Tc:ARPE-19Emt_00hr45minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse 0 288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_rev Tc:ARPE-19Emt_00hr45minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse 1 288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep2.CNhs14473.13635-146I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep2_CNhs14473_13635-146I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13635-146I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep2_CNhs14473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13635-146I8\ urlLabel FANTOM5 Details:\ ENCFF975RFH ENCFF975RFH bigWig Left lung, female child (16 years): (5) CTCF, ENCFF975RFH 2 289 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF975RFH.bw\ color 0,176,240\ longLabel Left lung, female child (16 years): (5) CTCF, ENCFF975RFH\ maxHeightPixels 30\ parent CTCF_view off\ priority 60.4\ shortLabel ENCFF975RFH\ subGroups organ=lung view=CTCF_view simpleBiosample=left_lung-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeCtcf\ track ENCFF975RFH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF279TIE ENCSR000BLI Signal bigWig K562 E2F6 ENCSR000BLI signal 2 289 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/32213bcd-1f56-4e7a-aeaa-4767daeb99ff/ENCFF279TIE.bigWig\ color 254,75,173\ longLabel K562 E2F6 ENCSR000BLI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLI Signal\ track wgEncodeReg4TfChip_ENCFF279TIE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF748JVS ENCSR000DVK Signal bigWig Retinal pigment epithelial cell H3K4me3 signal 2 289 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/91aed10b-db04-440e-9790-fe10825eed09/ENCFF748JVS.bigWig\ color 255,0,0\ longLabel Retinal pigment epithelial cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVK Signal\ track wgEncodeReg4Epigenetics_ENCFF748JVS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF128YXB ENCSR229LFK + strand bigWig Right lobe of liver tissue female child (16 years) + strand total RNA-seq signal 2 289 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/599a21e8-916d-49e0-aca7-74870cc7b6b0/ENCFF128YXB.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female child (16 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR229LFK + strand\ track wgEncodeReg4RnaSeq_ENCFF128YXB\ type bigWig\ visibility full\ encTfChipPkENCFF723LVE H54 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in H54 from ENCODE 3 (ENCFF723LVE) 0 289 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in H54 from ENCODE 3 (ENCFF723LVE)\ parent encTfChipPk off\ shortLabel H54 CTCF\ subGroups cellType=H54 factor=CTCF\ track encTfChipPkENCFF723LVE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_fwd Tc:ARPE-19Emt_00hr45minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward 0 289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_fwd Tc:ARPE-19Emt_00hr45minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward 1 289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ENCFF543MYI ENCFF543MYI bigWig Upper lobe of left lung, female adult (53 years): (5) CTCF, ENCFF543MYI 2 290 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF543MYI.bw\ color 0,176,240\ longLabel Upper lobe of left lung, female adult (53 years): (5) CTCF, ENCFF543MYI\ maxHeightPixels 30\ parent CTCF_view off\ priority 164.4\ shortLabel ENCFF543MYI\ subGroups organ=lung view=CTCF_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF543MYI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF664RPC ENCSR000BLK Peak bigBed 5 K562 SRF peaks 4 290 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b04d1c5e-aab8-43d3-a05e-ade8e1f7e447/ENCFF664RPC.bigBed\ labelFields none\ longLabel K562 SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF664RPC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF437SZK ENCSR000DVN Peak bigBed 5 Endothelial cell of umbilical vein male newborn H3K4me3 peak 4 290 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/55ecee39-635e-40a3-b4ec-be8f52a995dd/ENCFF437SZK.bigBed\ color 255,0,0\ longLabel Endothelial cell of umbilical vein male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVN Peak\ track wgEncodeReg4Epigenetics_ENCFF437SZK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF946DUM ENCSR229LFK - strand bigWig Right lobe of liver tissue female child (16 years) - strand total RNA-seq signal 2 290 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/ccbd1497-4d24-4e3f-bac8-78e1ae7a6e98/ENCFF946DUM.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female child (16 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR229LFK - strand\ track wgEncodeReg4RnaSeq_ENCFF946DUM\ type bigWig\ visibility full\ encTfChipPkENCFF549PGC HCT116 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF549PGC) 0 290 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF549PGC)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 1\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF549PGC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_rev Tc:ARPE-19Emt_00hr45minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse 0 290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_rev Tc:ARPE-19Emt_00hr45minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse 1 290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2000hr45min%2c%20biol_rep3.CNhs14474.13636-146I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 00hr45min, biol_rep3_CNhs14474_13636-146I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13636-146I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha00hr45minBiolRep3_CNhs14474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13636-146I9\ urlLabel FANTOM5 Details:\ ENCFF862ZOO ENCFF862ZOO bigWig Upper lobe of left lung, male adult (37 years): (5) CTCF, ENCFF862ZOO 2 291 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF862ZOO.bw\ color 0,176,240\ longLabel Upper lobe of left lung, male adult (37 years): (5) CTCF, ENCFF862ZOO\ maxHeightPixels 30\ parent CTCF_view off\ priority 165.4\ shortLabel ENCFF862ZOO\ subGroups organ=lung view=CTCF_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF862ZOO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF216TRT ENCSR000BLK Signal bigWig K562 SRF ENCSR000BLK signal 2 291 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/bf9b9441-5ea9-451f-ad5a-779f2ee49784/ENCFF216TRT.bigWig\ color 254,75,173\ longLabel K562 SRF ENCSR000BLK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLK Signal\ track wgEncodeReg4TfChip_ENCFF216TRT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF033TJS ENCSR000DVN Signal bigWig Endothelial cell of umbilical vein male newborn H3K4me3 signal 2 291 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/cfffc192-1cae-4164-8564-159e2588cbb6/ENCFF033TJS.bigWig\ color 255,0,0\ longLabel Endothelial cell of umbilical vein male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVN Signal\ track wgEncodeReg4Epigenetics_ENCFF033TJS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF372CVL ENCSR231ICM + strand bigWig Ovary tissue female adult (47 years) + strand total RNA-seq signal 2 291 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/f2e26f78-bcc0-43c8-8282-7e3ba9b929f8/ENCFF372CVL.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR231ICM + strand\ track wgEncodeReg4RnaSeq_ENCFF372CVL\ type bigWig\ visibility full\ encTfChipPkENCFF518MQA HCT116 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF518MQA) 0 291 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF518MQA)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 2\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF518MQA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_fwd Tc:ARPE-19Emt_01hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward 0 291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_fwd Tc:ARPE-19Emt_01hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward 1 291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ENCFF033FEG ENCFF033FEG bigWig Lower lobe of left lung, female adult (59 years): (5) CTCF, ENCFF033FEG 2 292 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF033FEG.bw\ color 0,176,240\ longLabel Lower lobe of left lung, female adult (59 years): (5) CTCF, ENCFF033FEG\ maxHeightPixels 30\ parent CTCF_view off\ priority 63.4\ shortLabel ENCFF033FEG\ subGroups organ=lung view=CTCF_view simpleBiosample=lower_lobe_of_left_lung-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCtcf\ track ENCFF033FEG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF996TSW ENCSR000BLO Peak bigBed 5 K562 GABPA peaks 4 292 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/3007ba36-8fbc-4623-bae5-4e6d420c696d/ENCFF996TSW.bigBed\ labelFields none\ longLabel K562 GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF996TSW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF677IZD ENCSR000DVP Peak bigBed 5 Endothelial cell of umbilical vein male newborn CTCF peak 4 292 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/2d2969df-cfc0-4295-ba11-0457e7d436a3/ENCFF677IZD.bigBed\ color 0,176,240\ labelFields none\ longLabel Endothelial cell of umbilical vein male newborn CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVP Peak\ track wgEncodeReg4Epigenetics_ENCFF677IZD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF215GNJ ENCSR231ICM - strand bigWig Ovary tissue female adult (47 years) - strand total RNA-seq signal 2 292 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/44dc12a3-421c-447f-a6a7-ac0b233be6da/ENCFF215GNJ.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR231ICM - strand\ track wgEncodeReg4RnaSeq_ENCFF215GNJ\ type bigWig\ visibility full\ encTfChipPkENCFF171SNH HCT116 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF171SNH) 0 292 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HCT116 from ENCODE 3 (ENCFF171SNH)\ parent encTfChipPk off\ shortLabel HCT116 CTCF 3\ subGroups cellType=HCT116 factor=CTCF\ track encTfChipPkENCFF171SNH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_rev Tc:ARPE-19Emt_01hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse 0 292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_rev Tc:ARPE-19Emt_01hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse 1 292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep1.CNhs14475.13637-147A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep1_CNhs14475_13637-147A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13637-147A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep1_CNhs14475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13637-147A1\ urlLabel FANTOM5 Details:\ ENCFF070LLG ENCFF070LLG bigWig A673: (5) CTCF, ENCFF070LLG 2 293 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF070LLG.bw\ color 0,176,240\ longLabel A673: (5) CTCF, ENCFF070LLG\ maxHeightPixels 30\ parent CTCF_view off\ priority 1.4\ shortLabel ENCFF070LLG\ subGroups organ=muscle view=CTCF_view simpleBiosample=A673 biosampleType=cell_line donor=ENCDO027VXA dataType=typeCtcf\ track ENCFF070LLG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF441PRL ENCSR000BLO Signal bigWig K562 GABPA ENCSR000BLO signal 2 293 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/40059899-aaa4-48e9-9131-df44629a560d/ENCFF441PRL.bigWig\ color 254,75,173\ longLabel K562 GABPA ENCSR000BLO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLO Signal\ track wgEncodeReg4TfChip_ENCFF441PRL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF105ZMP ENCSR000DVP Signal bigWig Endothelial cell of umbilical vein male newborn CTCF signal 2 293 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/259c12cf-19e0-4ce6-973d-b0a39bd36114/ENCFF105ZMP.bigWig\ color 0,176,240\ longLabel Endothelial cell of umbilical vein male newborn CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVP Signal\ track wgEncodeReg4Epigenetics_ENCFF105ZMP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF155PJH ENCSR233IJT + strand bigWig Astrocyte + strand total RNA-seq signal 2 293 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/975e731e-76d3-4f3c-9e0b-4f7c2f41a200/ENCFF155PJH.bigWig\ color 155,155,18\ longLabel Astrocyte + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR233IJT + strand\ track wgEncodeReg4RnaSeq_ENCFF155PJH\ type bigWig\ visibility full\ encTfChipPkENCFF926EZW HCT116 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HCT116 from ENCODE 3 (ENCFF926EZW) 0 293 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HCT116 from ENCODE 3 (ENCFF926EZW)\ parent encTfChipPk off\ shortLabel HCT116 EZH2\ subGroups cellType=HCT116 factor=EZH2\ track encTfChipPkENCFF926EZW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_fwd Tc:ARPE-19Emt_01hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward 0 293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_fwd Tc:ARPE-19Emt_01hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward 1 293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ENCFF466BIT ENCFF466BIT bigWig Cardiac muscle cell, embryo: (5) CTCF, ENCFF466BIT 2 294 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF466BIT.bw\ color 0,176,240\ longLabel Cardiac muscle cell, embryo: (5) CTCF, ENCFF466BIT\ maxHeightPixels 30\ parent CTCF_view off\ priority 19.4\ shortLabel ENCFF466BIT\ subGroups organ=muscle view=CTCF_view simpleBiosample=cardiac_muscle_cell-_embryo biosampleType=in_vitro_differentiated_cells donor=ENCDO924HBJ dataType=typeCtcf\ track ENCFF466BIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF524IJO ENCSR000BLP Peak bigBed 5 K562 MAX peaks 4 294 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/e79d89d4-0426-4734-8b36-4e6daccefdc8/ENCFF524IJO.bigBed\ labelFields none\ longLabel K562 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF524IJO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF345VQO ENCSR000DVQ Peak bigBed 5 Fibroblast of villous mesenchyme CTCF peak 4 294 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/c0713c98-2560-4bc9-aef8-4a3e95c220b1/ENCFF345VQO.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of villous mesenchyme CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVQ Peak\ track wgEncodeReg4Epigenetics_ENCFF345VQO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF806ODK ENCSR233IJT - strand bigWig Astrocyte - strand total RNA-seq signal 2 294 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/dc19594c-f70e-4bca-b248-83bf2807f0cf/ENCFF806ODK.bigWig\ color 155,155,18\ longLabel Astrocyte - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR233IJT - strand\ track wgEncodeReg4RnaSeq_ENCFF806ODK\ type bigWig\ visibility full\ encTfChipPkENCFF998KDQ HCT116 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HCT116 from ENCODE 3 (ENCFF998KDQ) 0 294 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HCT116 from ENCODE 3 (ENCFF998KDQ)\ parent encTfChipPk off\ shortLabel HCT116 JUND\ subGroups cellType=HCT116 factor=JUND\ track encTfChipPkENCFF998KDQ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_rev Tc:ARPE-19Emt_01hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse 0 294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_rev Tc:ARPE-19Emt_01hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse 1 294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep2.CNhs14476.13638-147A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep2_CNhs14476_13638-147A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13638-147A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep2_CNhs14476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13638-147A2\ urlLabel FANTOM5 Details:\ ENCFF643VTS ENCFF643VTS bigWig Gastrocnemius medialis, female adult (51 years): (5) CTCF, ENCFF643VTS 2 295 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF643VTS.bw\ color 0,176,240\ longLabel Gastrocnemius medialis, female adult (51 years): (5) CTCF, ENCFF643VTS\ maxHeightPixels 30\ parent CTCF_view off\ priority 29.4\ shortLabel ENCFF643VTS\ subGroups organ=muscle view=CTCF_view simpleBiosample=gastrocnemius_medialis-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF643VTS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF750XUV ENCSR000BLP Signal bigWig K562 MAX ENCSR000BLP signal 2 295 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/b3b4b543-aa68-4809-817c-b77520341c54/ENCFF750XUV.bigWig\ color 254,75,173\ longLabel K562 MAX ENCSR000BLP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLP Signal\ track wgEncodeReg4TfChip_ENCFF750XUV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF666CXN ENCSR000DVQ Signal bigWig Fibroblast of villous mesenchyme CTCF signal 2 295 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e12f9e05-6235-45f9-b0f3-6d1c930564f8/ENCFF666CXN.bigWig\ color 0,176,240\ longLabel Fibroblast of villous mesenchyme CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVQ Signal\ track wgEncodeReg4Epigenetics_ENCFF666CXN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF640YYQ ENCSR233IVG + strand bigWig Dorsolateral prefrontal cortex tissue female adult (82 years) + strand total RNA-seq signal 2 295 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/aaf44ae7-42f7-4c11-b22f-3cd07fae71f4/ENCFF640YYQ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (82 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR233IVG + strand\ track wgEncodeReg4RnaSeq_ENCFF640YYQ\ type bigWig\ visibility full\ encTfChipPkENCFF215SIC HCT116 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in HCT116 from ENCODE 3 (ENCFF215SIC) 0 295 255 150 85 255 202 170 0 0 0 regulation 1 color 255,150,85\ longLabel Transcription Factor ChIP-seq Peaks of ZFX in HCT116 from ENCODE 3 (ENCFF215SIC)\ parent encTfChipPk off\ shortLabel HCT116 ZFX\ subGroups cellType=HCT116 factor=ZFX\ track encTfChipPkENCFF215SIC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_fwd Tc:ARPE-19Emt_01hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward 0 295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_fwd Tc:ARPE-19Emt_01hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward 1 295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ENCFF782JRA ENCFF782JRA bigWig Gastrocnemius medialis, male adult (54 years): (5) CTCF, ENCFF782JRA 2 296 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF782JRA.bw\ color 0,176,240\ longLabel Gastrocnemius medialis, male adult (54 years): (5) CTCF, ENCFF782JRA\ maxHeightPixels 30\ parent CTCF_view off\ priority 32.4\ shortLabel ENCFF782JRA\ subGroups organ=muscle view=CTCF_view simpleBiosample=gastrocnemius_medialis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF782JRA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF397YHR ENCSR000BLR Peak bigBed 5 K562 SIN3A peaks 4 296 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/2754a94b-fba4-4bad-b6d6-f5da145c9d22/ENCFF397YHR.bigBed\ labelFields none\ longLabel K562 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF397YHR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF291CKT ENCSR000DVS Peak bigBed 5 Fibroblast of villous mesenchyme H3K4me3 peak 4 296 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/590d94d3-4868-4ac4-b5f1-e7e1ddb34a31/ENCFF291CKT.bigBed\ color 255,0,0\ longLabel Fibroblast of villous mesenchyme H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVS Peak\ track wgEncodeReg4Epigenetics_ENCFF291CKT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF004MYZ ENCSR233IVG - strand bigWig Dorsolateral prefrontal cortex tissue female adult (82 years) - strand total RNA-seq signal 2 296 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/70ff086a-1731-4fd5-afec-4ec1b977a4d7/ENCFF004MYZ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (82 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR233IVG - strand\ track wgEncodeReg4RnaSeq_ENCFF004MYZ\ type bigWig\ visibility full\ encTfChipPkENCFF860DHS HEK293 TRIM28 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF860DHS) 0 296 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in HEK293 from ENCODE 3 (ENCFF860DHS)\ parent encTfChipPk off\ shortLabel HEK293 TRIM28\ subGroups cellType=HEK293 factor=TRIM28\ track encTfChipPkENCFF860DHS\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_rev Tc:ARPE-19Emt_01hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse 0 296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_rev Tc:ARPE-19Emt_01hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse 1 296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr00min%2c%20biol_rep3.CNhs14477.13639-147A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr00min, biol_rep3_CNhs14477_13639-147A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13639-147A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr00minBiolRep3_CNhs14477_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13639-147A3\ urlLabel FANTOM5 Details:\ ENCFF055HAN ENCFF055HAN bigWig Gastrocnemius medialis, female adult (53 years): (5) CTCF, ENCFF055HAN 2 297 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF055HAN.bw\ color 0,176,240\ longLabel Gastrocnemius medialis, female adult (53 years): (5) CTCF, ENCFF055HAN\ maxHeightPixels 30\ parent CTCF_view off\ priority 30.4\ shortLabel ENCFF055HAN\ subGroups organ=muscle view=CTCF_view simpleBiosample=gastrocnemius_medialis-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF055HAN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF176UCO ENCSR000BLR Signal bigWig K562 SIN3A ENCSR000BLR signal 2 297 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/6f421b05-df3a-4bc1-83e1-7f349bb9d9dd/ENCFF176UCO.bigWig\ color 254,75,173\ longLabel K562 SIN3A ENCSR000BLR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLR Signal\ track wgEncodeReg4TfChip_ENCFF176UCO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF053DKP ENCSR000DVS Signal bigWig Fibroblast of villous mesenchyme H3K4me3 signal 2 297 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/0ed35977-fa60-42a1-a124-25166c48a1a7/ENCFF053DKP.bigWig\ color 255,0,0\ longLabel Fibroblast of villous mesenchyme H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVS Signal\ track wgEncodeReg4Epigenetics_ENCFF053DKP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF011SVY ENCSR235PLU + strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years) + strand total RNA-seq signal 2 297 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/0a188343-8149-4a7f-b7da-30481dbfc4ae/ENCFF011SVY.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR235PLU + strand\ track wgEncodeReg4RnaSeq_ENCFF011SVY\ type bigWig\ visibility full\ encTfChipPkENCFF827SZZ HEK293 ZNF263 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF263 in HEK293 from ENCODE 3 (ENCFF827SZZ) 0 297 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF263 in HEK293 from ENCODE 3 (ENCFF827SZZ)\ parent encTfChipPk off\ shortLabel HEK293 ZNF263\ subGroups cellType=HEK293 factor=ZNF263\ track encTfChipPkENCFF827SZZ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_fwd Tc:ARPE-19Emt_01hr20minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward 0 297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_fwd Tc:ARPE-19Emt_01hr20minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward 1 297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ ENCFF070MOG ENCFF070MOG bigWig Gastrocnemius medialis, male adult (37 years): (5) CTCF, ENCFF070MOG 2 298 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF070MOG.bw\ color 0,176,240\ longLabel Gastrocnemius medialis, male adult (37 years): (5) CTCF, ENCFF070MOG\ maxHeightPixels 30\ parent CTCF_view off\ priority 31.4\ shortLabel ENCFF070MOG\ subGroups organ=muscle view=CTCF_view simpleBiosample=gastrocnemius_medialis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF070MOG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF906QIS ENCSR000BLS Peak bigBed 5 HepG2 RAD21 peaks 4 298 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/001621a7-8bb5-4db5-9739-8e2b7ff95151/ENCFF906QIS.bigBed\ labelFields none\ longLabel HepG2 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF906QIS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF926AUV ENCSR000DVU Peak bigBed 5 Jurkat, Clone E6-1 H3K4me3 peak 4 298 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/13038077-0241-40bd-b847-1fa7cb84ed64/ENCFF926AUV.bigBed\ color 255,0,0\ longLabel Jurkat, Clone E6-1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVU Peak\ track wgEncodeReg4Epigenetics_ENCFF926AUV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF388ZLS ENCSR235PLU - strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years) - strand total RNA-seq signal 2 298 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/04c3763c-2ef7-4f60-8000-eb6335b2975a/ENCFF388ZLS.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (50 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR235PLU - strand\ track wgEncodeReg4RnaSeq_ENCFF388ZLS\ type bigWig\ visibility full\ encTfChipPkENCFF694XWV HEK293T ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in HEK293T from ENCODE 3 (ENCFF694XWV) 0 298 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ARNT in HEK293T from ENCODE 3 (ENCFF694XWV)\ parent encTfChipPk off\ shortLabel HEK293T ARNT\ subGroups cellType=HEK293T factor=ARNT\ track encTfChipPkENCFF694XWV\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_rev Tc:ARPE-19Emt_01hr20minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse 0 298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_rev Tc:ARPE-19Emt_01hr20minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse 1 298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep1.CNhs14478.13640-147A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep1_CNhs14478_13640-147A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13640-147A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep1_CNhs14478_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13640-147A4\ urlLabel FANTOM5 Details:\ ENCFF526HRV ENCFF526HRV bigWig Esophagus muscularis mucosa, male adult (37 years): (5) CTCF, ENCFF526HRV 2 299 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF526HRV.bw\ color 0,176,240\ longLabel Esophagus muscularis mucosa, male adult (37 years): (5) CTCF, ENCFF526HRV\ maxHeightPixels 30\ parent CTCF_view off\ priority 27.4\ shortLabel ENCFF526HRV\ subGroups organ=muscle view=CTCF_view simpleBiosample=esophagus_muscularis_mucosa-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF526HRV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF972ODZ ENCSR000BLS Signal bigWig HepG2 RAD21 ENCSR000BLS signal 2 299 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/778864bc-a152-48b2-8210-5ab521ec53b4/ENCFF972ODZ.bigWig\ color 137,152,82\ longLabel HepG2 RAD21 ENCSR000BLS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLS Signal\ track wgEncodeReg4TfChip_ENCFF972ODZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF094QHV ENCSR000DVU Signal bigWig Jurkat, Clone E6-1 H3K4me3 signal 2 299 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/233a1483-aeca-4dc2-830d-bdb1301dafe1/ENCFF094QHV.bigWig\ color 255,0,0\ longLabel Jurkat, Clone E6-1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DVU Signal\ track wgEncodeReg4Epigenetics_ENCFF094QHV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF837FLM ENCSR238ZZD + strand bigWig Thyroid gland tissue female adult (53 years) + strand total RNA-seq signal 2 299 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/05/510f3654-51c6-40e2-92da-d4e93bc9aa60/ENCFF837FLM.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR238ZZD + strand\ track wgEncodeReg4RnaSeq_ENCFF837FLM\ type bigWig\ visibility full\ encTfChipPkENCFF104NYV HEK293T BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HEK293T from ENCODE 3 (ENCFF104NYV) 0 299 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HEK293T from ENCODE 3 (ENCFF104NYV)\ parent encTfChipPk off\ shortLabel HEK293T BHLHE40\ subGroups cellType=HEK293T factor=BHLHE40\ track encTfChipPkENCFF104NYV\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_fwd Tc:ARPE-19Emt_01hr20minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward 0 299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_fwd Tc:ARPE-19Emt_01hr20minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward 1 299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ ENCFF670COF ENCFF670COF bigWig Tibial nerve, female adult (51 years): (5) CTCF, ENCFF670COF 2 300 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF670COF.bw\ color 0,176,240\ longLabel Tibial nerve, female adult (51 years): (5) CTCF, ENCFF670COF\ maxHeightPixels 30\ parent CTCF_view off\ priority 155.4\ shortLabel ENCFF670COF\ subGroups organ=nerve view=CTCF_view simpleBiosample=tibial_nerve-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF670COF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF802MHJ ENCSR000BLT Peak bigBed 5 GM12892 YY1 peaks 4 300 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/d828eaf1-1bf8-4a6d-be48-c39af96d8eec/ENCFF802MHJ.bigBed\ labelFields none\ longLabel GM12892 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF802MHJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF063RHJ ENCSR000DWF Peak bigBed 5 LNCaP clone FGC H3K4me3 peak 4 300 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/a4e3b181-cc65-40c0-b35f-1b3610f074a9/ENCFF063RHJ.bigBed\ color 255,0,0\ longLabel LNCaP clone FGC H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWF Peak\ track wgEncodeReg4Epigenetics_ENCFF063RHJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF714XZG ENCSR238ZZD - strand bigWig Thyroid gland tissue female adult (53 years) - strand total RNA-seq signal 2 300 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/05/cb4b2ff9-bd23-4b4b-9f5b-722e4882430d/ENCFF714XZG.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR238ZZD - strand\ track wgEncodeReg4RnaSeq_ENCFF714XZG\ type bigWig\ visibility full\ encTfChipPkENCFF867WWZ HEK293T CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in HEK293T from ENCODE 3 (ENCFF867WWZ) 0 300 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in HEK293T from ENCODE 3 (ENCFF867WWZ)\ parent encTfChipPk off\ shortLabel HEK293T CTBP1\ subGroups cellType=HEK293T factor=CTBP1\ track encTfChipPkENCFF867WWZ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_rev Tc:ARPE-19Emt_01hr20minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse 0 300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_rev Tc:ARPE-19Emt_01hr20minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse 1 300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep2.CNhs14479.13641-147A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep2_CNhs14479_13641-147A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13641-147A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep2_CNhs14479_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13641-147A5\ urlLabel FANTOM5 Details:\ ENCFF543LIT ENCFF543LIT bigWig Tibial nerve, male adult (54 years): (5) CTCF, ENCFF543LIT 2 301 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF543LIT.bw\ color 0,176,240\ longLabel Tibial nerve, male adult (54 years): (5) CTCF, ENCFF543LIT\ maxHeightPixels 30\ parent CTCF_view off\ priority 157.4\ shortLabel ENCFF543LIT\ subGroups organ=nerve view=CTCF_view simpleBiosample=tibial_nerve-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF543LIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF839ZEC ENCSR000BLT Signal bigWig GM12892 YY1 ENCSR000BLT signal 2 301 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/eefb4ea5-8efd-4b3c-9902-c4c5339e7dde/ENCFF839ZEC.bigWig\ color 254,75,173\ longLabel GM12892 YY1 ENCSR000BLT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLT Signal\ track wgEncodeReg4TfChip_ENCFF839ZEC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF099XXL ENCSR000DWF Signal bigWig LNCaP clone FGC H3K4me3 signal 2 301 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/5c81763d-ab73-49ff-b5fa-79432afd8f9a/ENCFF099XXL.bigWig\ color 255,0,0\ longLabel LNCaP clone FGC H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWF Signal\ track wgEncodeReg4Epigenetics_ENCFF099XXL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF008UXK ENCSR240JQW + strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 301 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/4c983499-8b17-4f7c-9d01-3f9f36cfa8df/ENCFF008UXK.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR240JQW + strand\ track wgEncodeReg4RnaSeq_ENCFF008UXK\ type bigWig\ visibility full\ encTfChipPkENCFF919JTO HEK293T ELF4 narrowPeak Transcription Factor ChIP-seq Peaks of ELF4 in HEK293T from ENCODE 3 (ENCFF919JTO) 0 301 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELF4 in HEK293T from ENCODE 3 (ENCFF919JTO)\ parent encTfChipPk off\ shortLabel HEK293T ELF4\ subGroups cellType=HEK293T factor=ELF4\ track encTfChipPkENCFF919JTO\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_fwd Tc:ARPE-19Emt_01hr20minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward 0 301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_fwd Tc:ARPE-19Emt_01hr20minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward 1 301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ ENCFF670BZH ENCFF670BZH bigWig Tibial nerve, male adult (37 years): (5) CTCF, ENCFF670BZH 2 302 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF670BZH.bw\ color 0,176,240\ longLabel Tibial nerve, male adult (37 years): (5) CTCF, ENCFF670BZH\ maxHeightPixels 30\ parent CTCF_view off\ priority 156.4\ shortLabel ENCFF670BZH\ subGroups organ=nerve view=CTCF_view simpleBiosample=tibial_nerve-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF670BZH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF085VVL ENCSR000BLU Peak bigBed 5 H1 TAF7 peaks 4 302 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/12/08/49bae59e-7293-4acb-9b89-880d7220a088/ENCFF085VVL.bigBed\ labelFields none\ longLabel H1 TAF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF085VVL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF139NQI ENCSR000DWH Peak bigBed 5 MCF-7 CTCF peak 4 302 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/823970df-bc4e-44fe-94dd-72757bb0d10a/ENCFF139NQI.bigBed\ color 0,176,240\ labelFields none\ longLabel MCF-7 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWH Peak\ track wgEncodeReg4Epigenetics_ENCFF139NQI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF186NMP ENCSR240JQW - strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 302 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6024fb7d-8e6b-44bd-a7ed-d95368026c88/ENCFF186NMP.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR240JQW - strand\ track wgEncodeReg4RnaSeq_ENCFF186NMP\ type bigWig\ visibility full\ encTfChipPkENCFF514ZNN HEK293T FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HEK293T from ENCODE 3 (ENCFF514ZNN) 0 302 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HEK293T from ENCODE 3 (ENCFF514ZNN)\ parent encTfChipPk off\ shortLabel HEK293T FOXA1\ subGroups cellType=HEK293T factor=FOXA1\ track encTfChipPkENCFF514ZNN\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_rev Tc:ARPE-19Emt_01hr20minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse 0 302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_rev Tc:ARPE-19Emt_01hr20minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse 1 302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr20min%2c%20biol_rep3.CNhs14480.13642-147A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr20min, biol_rep3_CNhs14480_13642-147A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13642-147A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr20minBiolRep3_CNhs14480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13642-147A6\ urlLabel FANTOM5 Details:\ ENCFF004ITE ENCFF004ITE bigWig Panc1: (5) CTCF, ENCFF004ITE 2 303 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF004ITE.bw\ color 0,176,240\ longLabel Panc1: (5) CTCF, ENCFF004ITE\ maxHeightPixels 30\ parent CTCF_view off\ priority 120.4\ shortLabel ENCFF004ITE\ subGroups organ=pancreas view=CTCF_view simpleBiosample=Panc1 biosampleType=cell_line donor=ENCDO000ABB dataType=typeCtcf\ track ENCFF004ITE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF160JKQ ENCSR000BLU Signal bigWig H1 TAF7 ENCSR000BLU signal 2 303 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2016/12/14/7d45b149-487d-4d0b-b8aa-2a642068e047/ENCFF160JKQ.bigWig\ color 118,158,101\ longLabel H1 TAF7 ENCSR000BLU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLU Signal\ track wgEncodeReg4TfChip_ENCFF160JKQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF662LGI ENCSR000DWH Signal bigWig MCF-7 CTCF signal 2 303 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/43f960d3-c4b6-4e43-add7-af31538a18ae/ENCFF662LGI.bigWig\ color 0,176,240\ longLabel MCF-7 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWH Signal\ track wgEncodeReg4Epigenetics_ENCFF662LGI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF201YLL ENCSR241EBI + strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal 2 303 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/5bb18820-1a69-4ca0-804c-2f19fbb22cb5/ENCFF201YLL.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR241EBI + strand\ track wgEncodeReg4RnaSeq_ENCFF201YLL\ type bigWig\ visibility full\ encTfChipPkENCFF959TZW HEK293T FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in HEK293T from ENCODE 3 (ENCFF959TZW) 0 303 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in HEK293T from ENCODE 3 (ENCFF959TZW)\ parent encTfChipPk off\ shortLabel HEK293T FOXK2\ subGroups cellType=HEK293T factor=FOXK2\ track encTfChipPkENCFF959TZW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_fwd Tc:ARPE-19Emt_01hr40minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward 0 303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_fwd Tc:ARPE-19Emt_01hr40minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward 1 303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ENCFF559SRW ENCFF559SRW bigWig Progenitor cell of endocrine pancreas, female embryo (5 days): (5) CTCF, ENCFF559SRW 2 304 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF559SRW.bw\ color 0,176,240\ longLabel Progenitor cell of endocrine pancreas, female embryo (5 days): (5) CTCF, ENCFF559SRW\ maxHeightPixels 30\ parent CTCF_view off\ priority 131.4\ shortLabel ENCFF559SRW\ subGroups organ=pancreas view=CTCF_view simpleBiosample=progenitor_cell_of_endocrine_pancreas-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF559SRW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF625QHW ENCSR000BLV Peak bigBed 5 HepG2 SRF peaks 4 304 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/51551821-5ff7-4d54-ac2a-c60471447204/ENCFF625QHW.bigBed\ labelFields none\ longLabel HepG2 SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF625QHW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF249YJG ENCSR000DWJ Peak bigBed 5 MCF-7 H3K4me3 peak 4 304 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/91a83416-3192-42f4-b044-a7d97e8f85b8/ENCFF249YJG.bigBed\ color 255,0,0\ longLabel MCF-7 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWJ Peak\ track wgEncodeReg4Epigenetics_ENCFF249YJG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF720NBW ENCSR241EBI - strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal 2 304 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/5a7ec766-df47-47c0-a80e-a367807ad4cd/ENCFF720NBW.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR241EBI - strand\ track wgEncodeReg4RnaSeq_ENCFF720NBW\ type bigWig\ visibility full\ encTfChipPkENCFF685TME HEK293T FOXM1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXM1 in HEK293T from ENCODE 3 (ENCFF685TME) 0 304 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXM1 in HEK293T from ENCODE 3 (ENCFF685TME)\ parent encTfChipPk off\ shortLabel HEK293T FOXM1\ subGroups cellType=HEK293T factor=FOXM1\ track encTfChipPkENCFF685TME\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_rev Tc:ARPE-19Emt_01hr40minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse 0 304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_rev Tc:ARPE-19Emt_01hr40minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse 1 304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep1.CNhs14482.13643-147A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep1_CNhs14482_13643-147A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13643-147A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep1_CNhs14482_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13643-147A7\ urlLabel FANTOM5 Details:\ ENCFF973VNM ENCFF973VNM bigWig Type B pancreatic cell, female embryo (5 days): (5) CTCF, ENCFF973VNM 2 305 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF973VNM.bw\ color 0,176,240\ longLabel Type B pancreatic cell, female embryo (5 days): (5) CTCF, ENCFF973VNM\ maxHeightPixels 30\ parent CTCF_view off\ priority 162.4\ shortLabel ENCFF973VNM\ subGroups organ=pancreas view=CTCF_view simpleBiosample=type_B_pancreatic_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeCtcf\ track ENCFF973VNM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF202ZJP ENCSR000BLV Signal bigWig HepG2 SRF ENCSR000BLV signal 2 305 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/e20854c5-3d9f-49ec-888d-7f981d33c7c1/ENCFF202ZJP.bigWig\ color 137,152,82\ longLabel HepG2 SRF ENCSR000BLV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLV Signal\ track wgEncodeReg4TfChip_ENCFF202ZJP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF935BFQ ENCSR000DWJ Signal bigWig MCF-7 H3K4me3 signal 2 305 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/7af70b17-fe6b-4d5f-90e3-ae5cb1ef364c/ENCFF935BFQ.bigWig\ color 255,0,0\ longLabel MCF-7 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWJ Signal\ track wgEncodeReg4Epigenetics_ENCFF935BFQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF503NGO ENCSR244HHV + strand bigWig Placenta tissue male embryo + strand total RNA-seq signal 2 305 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/811dbaa7-0bd8-4fce-9131-ca5dd85d33e4/ENCFF503NGO.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR244HHV + strand\ track wgEncodeReg4RnaSeq_ENCFF503NGO\ type bigWig\ visibility full\ encTfChipPkENCFF156RLT HEK293T L3MBTL2 narrowPeak Transcription Factor ChIP-seq Peaks of L3MBTL2 in HEK293T from ENCODE 3 (ENCFF156RLT) 0 305 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of L3MBTL2 in HEK293T from ENCODE 3 (ENCFF156RLT)\ parent encTfChipPk off\ shortLabel HEK293T L3MBTL2\ subGroups cellType=HEK293T factor=L3MBTL2\ track encTfChipPkENCFF156RLT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_fwd Tc:ARPE-19Emt_01hr40minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward 0 305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_fwd Tc:ARPE-19Emt_01hr40minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward 1 305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ENCFF232BMJ ENCFF232BMJ bigWig Pancreas, female adult (61 years): (5) CTCF, ENCFF232BMJ 2 306 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF232BMJ.bw\ color 0,176,240\ longLabel Pancreas, female adult (61 years): (5) CTCF, ENCFF232BMJ\ maxHeightPixels 30\ parent CTCF_view off\ priority 123.4\ shortLabel ENCFF232BMJ\ subGroups organ=pancreas view=CTCF_view simpleBiosample=pancreas-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeCtcf\ track ENCFF232BMJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF354ACD ENCSR000BLW Peak bigBed 5 HepG2 EP300 peaks 4 306 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5b66a9e9-879e-423b-8fe7-8880d9a8b624/ENCFF354ACD.bigBed\ labelFields none\ longLabel HepG2 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF354ACD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF155DNY ENCSR000DWN Peak bigBed 5 NB4 CTCF peak 4 306 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9d8095f8-c4ef-4995-a76b-252b439f8656/ENCFF155DNY.bigBed\ color 0,176,240\ labelFields none\ longLabel NB4 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWN Peak\ track wgEncodeReg4Epigenetics_ENCFF155DNY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF360BWC ENCSR244HHV - strand bigWig Placenta tissue male embryo - strand total RNA-seq signal 2 306 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/4ee7700e-cda6-4203-9b8b-135653f3932d/ENCFF360BWC.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR244HHV - strand\ track wgEncodeReg4RnaSeq_ENCFF360BWC\ type bigWig\ visibility full\ encTfChipPkENCFF939UTN HEK293T LEF1 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in HEK293T from ENCODE 3 (ENCFF939UTN) 0 306 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of LEF1 in HEK293T from ENCODE 3 (ENCFF939UTN)\ parent encTfChipPk off\ shortLabel HEK293T LEF1\ subGroups cellType=HEK293T factor=LEF1\ track encTfChipPkENCFF939UTN\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_rev Tc:ARPE-19Emt_01hr40minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse 0 306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_rev Tc:ARPE-19Emt_01hr40minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse 1 306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep2.CNhs14483.13644-147A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep2_CNhs14483_13644-147A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13644-147A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep2_CNhs14483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13644-147A8\ urlLabel FANTOM5 Details:\ ENCFF893BCC ENCFF893BCC bigWig Body of pancreas, female adult (51 years): (5) CTCF, ENCFF893BCC 2 307 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF893BCC.bw\ color 0,176,240\ longLabel Body of pancreas, female adult (51 years): (5) CTCF, ENCFF893BCC\ maxHeightPixels 30\ parent CTCF_view off\ priority 13.4\ shortLabel ENCFF893BCC\ subGroups organ=pancreas view=CTCF_view simpleBiosample=body_of_pancreas-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF893BCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF705FOY ENCSR000BLW Signal bigWig HepG2 EP300 ENCSR000BLW signal 2 307 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/0ad18e30-ceff-45f0-976d-0599e114e50d/ENCFF705FOY.bigWig\ color 137,152,82\ longLabel HepG2 EP300 ENCSR000BLW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BLW Signal\ track wgEncodeReg4TfChip_ENCFF705FOY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF740SMV ENCSR000DWN Signal bigWig NB4 CTCF signal 2 307 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/01e5b290-284c-4ccd-822a-e52bbc82b72a/ENCFF740SMV.bigWig\ color 0,176,240\ longLabel NB4 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWN Signal\ track wgEncodeReg4Epigenetics_ENCFF740SMV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF674SIO ENCSR244ISQ + strand bigWig Neural progenitor cell originated from H9 + strand total RNA-seq signal 2 307 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/aaf4e480-cbd2-4873-a7f6-d4ef0aacc775/ENCFF674SIO.bigWig\ color 155,155,18\ longLabel Neural progenitor cell originated from H9 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR244ISQ + strand\ track wgEncodeReg4RnaSeq_ENCFF674SIO\ type bigWig\ visibility full\ encTfChipPkENCFF421INQ HEK293T NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in HEK293T from ENCODE 3 (ENCFF421INQ) 0 307 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFRKB in HEK293T from ENCODE 3 (ENCFF421INQ)\ parent encTfChipPk off\ shortLabel HEK293T NFRKB\ subGroups cellType=HEK293T factor=NFRKB\ track encTfChipPkENCFF421INQ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_fwd Tc:ARPE-19Emt_01hr40minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward 0 307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_fwd Tc:ARPE-19Emt_01hr40minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward 1 307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ENCFF078UTK ENCFF078UTK bigWig Body of pancreas, male adult (54 years): (5) CTCF, ENCFF078UTK 2 308 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF078UTK.bw\ color 0,176,240\ longLabel Body of pancreas, male adult (54 years): (5) CTCF, ENCFF078UTK\ maxHeightPixels 30\ parent CTCF_view off\ priority 15.4\ shortLabel ENCFF078UTK\ subGroups organ=pancreas view=CTCF_view simpleBiosample=body_of_pancreas-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF078UTK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF432UGA ENCSR000BMB Peak bigBed 5 GM12878 ELF1 peaks 4 308 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5cf26ff5-fd3b-4224-b46c-109d5c8d4568/ENCFF432UGA.bigBed\ labelFields none\ longLabel GM12878 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF432UGA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF775TXQ ENCSR000DWP Peak bigBed 5 NB4 H3K4me3 peak 4 308 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/77da9226-446f-4572-8079-46d2613e22c1/ENCFF775TXQ.bigBed\ color 255,0,0\ longLabel NB4 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWP Peak\ track wgEncodeReg4Epigenetics_ENCFF775TXQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF940INU ENCSR244ISQ - strand bigWig Neural progenitor cell originated from H9 - strand total RNA-seq signal 2 308 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/b189446c-c769-42ef-a307-54a728a25c0d/ENCFF940INU.bigWig\ color 155,155,18\ longLabel Neural progenitor cell originated from H9 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR244ISQ - strand\ track wgEncodeReg4RnaSeq_ENCFF940INU\ type bigWig\ visibility full\ encTfChipPkENCFF234WZT HEK293T PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in HEK293T from ENCODE 3 (ENCFF234WZT) 0 308 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in HEK293T from ENCODE 3 (ENCFF234WZT)\ parent encTfChipPk off\ shortLabel HEK293T PKNOX1\ subGroups cellType=HEK293T factor=PKNOX1\ track encTfChipPkENCFF234WZT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_rev Tc:ARPE-19Emt_01hr40minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse 0 308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_rev Tc:ARPE-19Emt_01hr40minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse 1 308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2001hr40min%2c%20biol_rep3.CNhs14484.13645-147A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 01hr40min, biol_rep3_CNhs14484_13645-147A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13645-147A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha01hr40minBiolRep3_CNhs14484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13645-147A9\ urlLabel FANTOM5 Details:\ ENCFF521NYK ENCFF521NYK bigWig Pancreas, female child (16 years): (5) CTCF, ENCFF521NYK 2 309 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF521NYK.bw\ color 0,176,240\ longLabel Pancreas, female child (16 years): (5) CTCF, ENCFF521NYK\ maxHeightPixels 30\ parent CTCF_view off\ priority 124.4\ shortLabel ENCFF521NYK\ subGroups organ=pancreas view=CTCF_view simpleBiosample=pancreas-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeCtcf\ track ENCFF521NYK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF262CCB ENCSR000BMB Signal bigWig GM12878 ELF1 ENCSR000BMB signal 2 309 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/de578462-16a3-4359-939f-28e0708b90c9/ENCFF262CCB.bigWig\ color 254,75,173\ longLabel GM12878 ELF1 ENCSR000BMB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMB Signal\ track wgEncodeReg4TfChip_ENCFF262CCB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF228XER ENCSR000DWP Signal bigWig NB4 H3K4me3 signal 2 309 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/1af3e96c-c8ee-4e17-8d14-c0f5587a0188/ENCFF228XER.bigWig\ color 255,0,0\ longLabel NB4 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWP Signal\ track wgEncodeReg4Epigenetics_ENCFF228XER\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF908VIH ENCSR245ATJ + strand bigWig HepG2 + strand total RNA-seq signal 2 309 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/ff38a371-eb0e-4bad-97a4-35ee21c050bb/ENCFF908VIH.bigWig\ color 137,152,82\ longLabel HepG2 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR245ATJ + strand\ track wgEncodeReg4RnaSeq_ENCFF908VIH\ type bigWig\ visibility full\ encTfChipPkENCFF532KPP HEK293T SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HEK293T from ENCODE 3 (ENCFF532KPP) 0 309 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in HEK293T from ENCODE 3 (ENCFF532KPP)\ parent encTfChipPk off\ shortLabel HEK293T SP1\ subGroups cellType=HEK293T factor=SP1\ track encTfChipPkENCFF532KPP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_fwd Tc:ARPE-19Emt_02hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward 0 309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_fwd Tc:ARPE-19Emt_02hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward 1 309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ENCFF890FKH ENCFF890FKH bigWig Pancreas, female adult (41 years): (5) CTCF, ENCFF890FKH 2 310 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF890FKH.bw\ color 0,176,240\ longLabel Pancreas, female adult (41 years): (5) CTCF, ENCFF890FKH\ maxHeightPixels 30\ parent CTCF_view off\ priority 121.4\ shortLabel ENCFF890FKH\ subGroups organ=pancreas view=CTCF_view simpleBiosample=pancreas-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCtcf\ track ENCFF890FKH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF087XCR ENCSR000BMC Peak bigBed 5 HepG2 HDAC2 peaks 4 310 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/cd578606-f9ae-49d9-9213-331834644368/ENCFF087XCR.bigBed\ labelFields none\ longLabel HepG2 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF087XCR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF671HLG ENCSR000DWQ Peak bigBed 5 Foreskin fibroblast male newborn CTCF peak 4 310 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/5497e79f-1849-4881-8343-a75fa0e07a7a/ENCFF671HLG.bigBed\ color 0,176,240\ labelFields none\ longLabel Foreskin fibroblast male newborn CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWQ Peak\ track wgEncodeReg4Epigenetics_ENCFF671HLG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF991LOA ENCSR245ATJ - strand bigWig HepG2 - strand total RNA-seq signal 2 310 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/7b0d3c58-2d36-4e7f-86d8-ae65a333e936/ENCFF991LOA.bigWig\ color 137,152,82\ longLabel HepG2 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR245ATJ - strand\ track wgEncodeReg4RnaSeq_ENCFF991LOA\ type bigWig\ visibility full\ encTfChipPkENCFF708RSP HEK293T SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in HEK293T from ENCODE 3 (ENCFF708RSP) 0 310 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in HEK293T from ENCODE 3 (ENCFF708RSP)\ parent encTfChipPk off\ shortLabel HEK293T SUZ12\ subGroups cellType=HEK293T factor=SUZ12\ track encTfChipPkENCFF708RSP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_rev Tc:ARPE-19Emt_02hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse 0 310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_rev Tc:ARPE-19Emt_02hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse 1 310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep1.CNhs14485.13646-147B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep1_CNhs14485_13646-147B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13646-147B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep1_CNhs14485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13646-147B1\ urlLabel FANTOM5 Details:\ ENCFF885ZLN ENCFF885ZLN bigWig Body of pancreas, male adult (37 years): (5) CTCF, ENCFF885ZLN 2 311 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF885ZLN.bw\ color 0,176,240\ longLabel Body of pancreas, male adult (37 years): (5) CTCF, ENCFF885ZLN\ maxHeightPixels 30\ parent CTCF_view off\ priority 14.4\ shortLabel ENCFF885ZLN\ subGroups organ=pancreas view=CTCF_view simpleBiosample=body_of_pancreas-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF885ZLN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF091VZO ENCSR000BMC Signal bigWig HepG2 HDAC2 ENCSR000BMC signal 2 311 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/09c182bf-8fa1-4f99-aad3-0b1f5bbbfccf/ENCFF091VZO.bigWig\ color 137,152,82\ longLabel HepG2 HDAC2 ENCSR000BMC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMC Signal\ track wgEncodeReg4TfChip_ENCFF091VZO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF076GOF ENCSR000DWQ Signal bigWig Foreskin fibroblast male newborn CTCF signal 2 311 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/11e9d059-170c-4e59-bf93-2cb8e1901003/ENCFF076GOF.bigWig\ color 0,176,240\ longLabel Foreskin fibroblast male newborn CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWQ Signal\ track wgEncodeReg4Epigenetics_ENCFF076GOF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF438KRA ENCSR252IPQ + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 311 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/d7b7dab0-c939-4236-b2a8-f4dfbc4a5884/ENCFF438KRA.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR252IPQ + strand\ track wgEncodeReg4RnaSeq_ENCFF438KRA\ type bigWig\ visibility full\ encTfChipPkENCFF829NNC HEK293T ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in HEK293T from ENCODE 3 (ENCFF829NNC) 0 311 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in HEK293T from ENCODE 3 (ENCFF829NNC)\ parent encTfChipPk off\ shortLabel HEK293T ZFX\ subGroups cellType=HEK293T factor=ZFX\ track encTfChipPkENCFF829NNC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_fwd Tc:ARPE-19Emt_02hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward 0 311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_fwd Tc:ARPE-19Emt_02hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward 1 311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ENCFF297EQI ENCFF297EQI bigWig Pancreas, female adult (59 years): (5) CTCF, ENCFF297EQI 2 312 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF297EQI.bw\ color 0,176,240\ longLabel Pancreas, female adult (59 years): (5) CTCF, ENCFF297EQI\ maxHeightPixels 30\ parent CTCF_view off\ priority 122.4\ shortLabel ENCFF297EQI\ subGroups organ=pancreas view=CTCF_view simpleBiosample=pancreas-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCtcf\ track ENCFF297EQI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF496AKI ENCSR000BMD Peak bigBed 5 K562 ELF1 peaks 4 312 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7b704565-88da-4aa5-b0a4-f297cbc36df8/ENCFF496AKI.bigBed\ labelFields none\ longLabel K562 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF496AKI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF800YOT ENCSR000DWS Peak bigBed 5 Foreskin fibroblast male newborn H3K4me3 peak 4 312 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/a60b5f00-86ab-4e2f-a3a2-831598a143ca/ENCFF800YOT.bigBed\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWS Peak\ track wgEncodeReg4Epigenetics_ENCFF800YOT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF007IUY ENCSR252IPQ - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 312 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/694bd61b-b263-4838-82d2-9c48acd87ab9/ENCFF007IUY.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR252IPQ - strand\ track wgEncodeReg4RnaSeq_ENCFF007IUY\ type bigWig\ visibility full\ encTfChipPkENCFF817UEX HEK293T ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in HEK293T from ENCODE 3 (ENCFF817UEX) 0 312 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in HEK293T from ENCODE 3 (ENCFF817UEX)\ parent encTfChipPk off\ shortLabel HEK293T ZNF384\ subGroups cellType=HEK293T factor=ZNF384\ track encTfChipPkENCFF817UEX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_rev Tc:ARPE-19Emt_02hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse 0 312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_rev Tc:ARPE-19Emt_02hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse 1 312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep2.CNhs14486.13647-147B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep2_CNhs14486_13647-147B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13647-147B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep2_CNhs14486_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13647-147B2\ urlLabel FANTOM5 Details:\ ENCFF406SZM ENCFF406SZM bigWig HFFc6: (5) CTCF, ENCFF406SZM 2 313 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF406SZM.bw\ color 0,176,240\ longLabel HFFc6: (5) CTCF, ENCFF406SZM\ maxHeightPixels 30\ parent CTCF_view off\ priority 55.4\ shortLabel ENCFF406SZM\ subGroups organ=penis view=CTCF_view simpleBiosample=HFFc6 biosampleType=cell_line donor=ENCDO737WWC dataType=typeCtcf\ track ENCFF406SZM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF320FFB ENCSR000BMD Signal bigWig K562 ELF1 ENCSR000BMD signal 2 313 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/484774da-3758-4395-a0b2-dc1adee88387/ENCFF320FFB.bigWig\ color 254,75,173\ longLabel K562 ELF1 ENCSR000BMD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMD Signal\ track wgEncodeReg4TfChip_ENCFF320FFB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF752EUQ ENCSR000DWS Signal bigWig Foreskin fibroblast male newborn H3K4me3 signal 2 313 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/d4a9eb22-174a-415f-a888-652c5a5c36d1/ENCFF752EUQ.bigWig\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWS Signal\ track wgEncodeReg4Epigenetics_ENCFF752EUQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF645AYP ENCSR252UHW + strand bigWig Heart right ventricle tissue female adult (46 years) + strand total RNA-seq signal 2 313 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/73aca0a0-744e-4c68-bdad-aa47e8948915/ENCFF645AYP.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (46 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR252UHW + strand\ track wgEncodeReg4RnaSeq_ENCFF645AYP\ type bigWig\ visibility full\ encTfChipPkENCFF750KVF HFF-Myc CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HFF-Myc from ENCODE 3 (ENCFF750KVF) 0 313 255 165 85 255 210 170 0 0 0 regulation 1 color 255,165,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HFF-Myc from ENCODE 3 (ENCFF750KVF)\ parent encTfChipPk off\ shortLabel HFF-Myc CTCF\ subGroups cellType=HFF-Myc factor=CTCF\ track encTfChipPkENCFF750KVF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_fwd Tc:ARPE-19Emt_02hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward 0 313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_fwd Tc:ARPE-19Emt_02hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward 1 313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ENCFF756ESH ENCFF756ESH bigWig PC-3: (5) CTCF, ENCFF756ESH 2 314 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF756ESH.bw\ color 0,176,240\ longLabel PC-3: (5) CTCF, ENCFF756ESH\ maxHeightPixels 30\ parent CTCF_view off\ priority 125.4\ shortLabel ENCFF756ESH\ subGroups organ=prostate view=CTCF_view simpleBiosample=PC-3 biosampleType=cell_line donor=ENCDO349AAA dataType=typeCtcf\ track ENCFF756ESH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF579ZGM ENCSR000BME Peak bigBed 5 K562 ZBTB7A peaks 4 314 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/edc40f32-c342-4609-8bbb-43a916746cb8/ENCFF579ZGM.bigBed\ labelFields none\ longLabel K562 ZBTB7A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BME Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF579ZGM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF327LLZ ENCSR000DWV Peak bigBed 5 Keratinocyte female H3K4me3 peak 4 314 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/6b3d97f0-7ea1-4fb6-9a78-679fd32208b3/ENCFF327LLZ.bigBed\ color 255,0,0\ longLabel Keratinocyte female H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWV Peak\ track wgEncodeReg4Epigenetics_ENCFF327LLZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF108ODQ ENCSR252UHW - strand bigWig Heart right ventricle tissue female adult (46 years) - strand total RNA-seq signal 2 314 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/a430e94c-8c87-4f5d-9fe8-e1b1976addd2/ENCFF108ODQ.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (46 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR252UHW - strand\ track wgEncodeReg4RnaSeq_ENCFF108ODQ\ type bigWig\ visibility full\ encTfChipPkENCFF152JZK HL-60 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HL-60 from ENCODE 3 (ENCFF152JZK) 0 314 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HL-60 from ENCODE 3 (ENCFF152JZK)\ parent encTfChipPk off\ shortLabel HL-60 CTCF\ subGroups cellType=HL-60 factor=CTCF\ track encTfChipPkENCFF152JZK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_rev Tc:ARPE-19Emt_02hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse 0 314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_rev Tc:ARPE-19Emt_02hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse 1 314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr00min%2c%20biol_rep3.CNhs14487.13648-147B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr00min, biol_rep3_CNhs14487_13648-147B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13648-147B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr00minBiolRep3_CNhs14487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13648-147B3\ urlLabel FANTOM5 Details:\ ENCFF310UCW ENCFF310UCW bigWig Prostate gland, male adult (37 years): (5) CTCF, ENCFF310UCW 2 315 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF310UCW.bw\ color 0,176,240\ longLabel Prostate gland, male adult (37 years): (5) CTCF, ENCFF310UCW\ maxHeightPixels 30\ parent CTCF_view off\ priority 132.4\ shortLabel ENCFF310UCW\ subGroups organ=prostate view=CTCF_view simpleBiosample=prostate_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF310UCW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF033JHZ ENCSR000BME Signal bigWig K562 ZBTB7A ENCSR000BME signal 2 315 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/09061adb-8188-4378-b7e4-9731ed3cca28/ENCFF033JHZ.bigWig\ color 254,75,173\ longLabel K562 ZBTB7A ENCSR000BME signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BME Signal\ track wgEncodeReg4TfChip_ENCFF033JHZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF719EBT ENCSR000DWV Signal bigWig Keratinocyte female H3K4me3 signal 2 315 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/18b8807c-bbf5-45ae-b6e6-e49fee9abe3d/ENCFF719EBT.bigWig\ color 255,0,0\ longLabel Keratinocyte female H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWV Signal\ track wgEncodeReg4Epigenetics_ENCFF719EBT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF003RPR ENCSR254JJM + strand bigWig Daoy + strand total RNA-seq signal 2 315 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/75b1fbc9-16cc-4544-80a0-2dc9164842c3/ENCFF003RPR.bigWig\ color 155,155,18\ longLabel Daoy + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR254JJM + strand\ track wgEncodeReg4RnaSeq_ENCFF003RPR\ type bigWig\ visibility full\ encTfChipPkENCFF564YAP HL-60 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HL-60 from ENCODE 3 (ENCFF564YAP) 0 315 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HL-60 from ENCODE 3 (ENCFF564YAP)\ parent encTfChipPk off\ shortLabel HL-60 GABPA\ subGroups cellType=HL-60 factor=GABPA\ track encTfChipPkENCFF564YAP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_fwd Tc:ARPE-19Emt_02hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward 0 315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_fwd Tc:ARPE-19Emt_02hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward 1 315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ENCFF369MIX ENCFF369MIX bigWig GM23338: (5) CTCF, ENCFF369MIX 2 316 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF369MIX.bw\ color 0,176,240\ longLabel GM23338: (5) CTCF, ENCFF369MIX\ maxHeightPixels 30\ parent CTCF_view off\ priority 35.4\ shortLabel ENCFF369MIX\ subGroups organ=skin view=CTCF_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeCtcf\ track ENCFF369MIX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF738SPU ENCSR000BMG Peak bigBed 5 K562 HDAC2 peaks 4 316 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7e9e1d97-579d-48c6-b15f-bc1750923ea0/ENCFF738SPU.bigBed\ labelFields none\ longLabel K562 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF738SPU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF084DUH ENCSR000DWY Peak bigBed 5 Fibroblast of lung male adult 45 years CTCF peak 4 316 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/4659f556-b380-4fb1-9cc2-6704bf61cb78/ENCFF084DUH.bigBed\ color 0,176,240\ labelFields none\ longLabel Fibroblast of lung male adult 45 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWY Peak\ track wgEncodeReg4Epigenetics_ENCFF084DUH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF603NZP ENCSR254JJM - strand bigWig Daoy - strand total RNA-seq signal 2 316 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/5806bb64-70e2-40d2-8e60-a238f080d55f/ENCFF603NZP.bigWig\ color 155,155,18\ longLabel Daoy - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR254JJM - strand\ track wgEncodeReg4RnaSeq_ENCFF603NZP\ type bigWig\ visibility full\ encTfChipPkENCFF839LPE HL-60 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in HL-60 from ENCODE 3 (ENCFF839LPE) 0 316 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HL-60 from ENCODE 3 (ENCFF839LPE)\ parent encTfChipPk off\ shortLabel HL-60 REST\ subGroups cellType=HL-60 factor=REST\ track encTfChipPkENCFF839LPE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_rev Tc:ARPE-19Emt_02hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse 0 316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_rev Tc:ARPE-19Emt_02hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse 1 316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep1.CNhs14488.13649-147B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep1_CNhs14488_13649-147B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13649-147B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep1_CNhs14488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13649-147B4\ urlLabel FANTOM5 Details:\ ENCFF553NAP ENCFF553NAP bigWig GM23338: (5) CTCF, ENCFF553NAP 2 317 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF553NAP.bw\ color 0,176,240\ longLabel GM23338: (5) CTCF, ENCFF553NAP\ maxHeightPixels 30\ parent CTCF_view off\ priority 36.4\ shortLabel ENCFF553NAP\ subGroups organ=skin view=CTCF_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeCtcf\ track ENCFF553NAP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF069JZH ENCSR000BMG Signal bigWig K562 HDAC2 ENCSR000BMG signal 2 317 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/412a32c3-acc8-4b30-af13-515238effb9e/ENCFF069JZH.bigWig\ color 254,75,173\ longLabel K562 HDAC2 ENCSR000BMG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMG Signal\ track wgEncodeReg4TfChip_ENCFF069JZH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF141GXC ENCSR000DWY Signal bigWig Fibroblast of lung male adult 45 years CTCF signal 2 317 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/162fb387-9a72-4cd2-b88c-90eb20f92673/ENCFF141GXC.bigWig\ color 0,176,240\ longLabel Fibroblast of lung male adult 45 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWY Signal\ track wgEncodeReg4Epigenetics_ENCFF141GXC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF590GQV ENCSR257FJF + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 317 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/9680844b-3e54-479b-bfd5-680b9715f02c/ENCFF590GQV.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR257FJF + strand\ track wgEncodeReg4RnaSeq_ENCFF590GQV\ type bigWig\ visibility full\ encTfChipPkENCFF797QGP HL-60 SPI1 narrowPeak Transcription Factor ChIP-seq Peaks of SPI1 in HL-60 from ENCODE 3 (ENCFF797QGP) 0 317 85 124 255 170 189 255 0 0 0 regulation 1 color 85,124,255\ longLabel Transcription Factor ChIP-seq Peaks of SPI1 in HL-60 from ENCODE 3 (ENCFF797QGP)\ parent encTfChipPk off\ shortLabel HL-60 SPI1\ subGroups cellType=HL-60 factor=SPI1\ track encTfChipPkENCFF797QGP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_fwd Tc:ARPE-19Emt_02hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward 0 317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_fwd Tc:ARPE-19Emt_02hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward 1 317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ENCFF638DZB ENCFF638DZB bigWig Keratinocyte, female: (5) CTCF, ENCFF638DZB 2 318 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF638DZB.bw\ color 0,176,240\ longLabel Keratinocyte, female: (5) CTCF, ENCFF638DZB\ maxHeightPixels 30\ parent CTCF_view off\ priority 59.4\ shortLabel ENCFF638DZB\ subGroups organ=skin view=CTCF_view simpleBiosample=keratinocyte-_female biosampleType=primary_cell donor=ENCDO268AAA dataType=typeCtcf\ track ENCFF638DZB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF660QRE ENCSR000BMH Peak bigBed 5 K562 YY1 peaks 4 318 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e74cd4ea-cc49-436f-bc57-4331741049f8/ENCFF660QRE.bigBed\ labelFields none\ longLabel K562 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF660QRE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF659AZR ENCSR000DWZ Peak bigBed 5 Fibroblast of lung male adult 45 years H3K4me3 peak 4 318 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/334084c0-8cfe-488a-9bd4-e5245b2917d1/ENCFF659AZR.bigBed\ color 255,0,0\ longLabel Fibroblast of lung male adult 45 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWZ Peak\ track wgEncodeReg4Epigenetics_ENCFF659AZR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF192PSN ENCSR257FJF - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 318 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/4ff62d59-61b6-4444-9a5a-4dec495ed10f/ENCFF192PSN.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR257FJF - strand\ track wgEncodeReg4RnaSeq_ENCFF192PSN\ type bigWig\ visibility full\ encTfChipPkENCFF260KLJ HeLa-S3 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HeLa-S3 from ENCODE 3 (ENCFF260KLJ) 0 318 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HeLa-S3 from ENCODE 3 (ENCFF260KLJ)\ parent encTfChipPk off\ shortLabel HeLa-S3 EZH2\ subGroups cellType=HeLa-S3 factor=EZH2\ track encTfChipPkENCFF260KLJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_rev Tc:ARPE-19Emt_02hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse 0 318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_rev Tc:ARPE-19Emt_02hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse 1 318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep2.CNhs14489.13650-147B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep2_CNhs14489_13650-147B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13650-147B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep2_CNhs14489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13650-147B5\ urlLabel FANTOM5 Details:\ ENCFF715AGA ENCFF715AGA bigWig Peyers patch, female adult (51 years): (5) CTCF, ENCFF715AGA 2 319 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF715AGA.bw\ color 0,176,240\ longLabel Peyers patch, female adult (51 years): (5) CTCF, ENCFF715AGA\ maxHeightPixels 30\ parent CTCF_view off\ priority 127.4\ shortLabel ENCFF715AGA\ subGroups organ=small_intestine view=CTCF_view simpleBiosample=Peyers_patch-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF715AGA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF914XSS ENCSR000BMH Signal bigWig K562 YY1 ENCSR000BMH signal 2 319 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/bf9291f6-aba8-4d63-a3db-6ac87f9d0b51/ENCFF914XSS.bigWig\ color 254,75,173\ longLabel K562 YY1 ENCSR000BMH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMH Signal\ track wgEncodeReg4TfChip_ENCFF914XSS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF654UDL ENCSR000DWZ Signal bigWig Fibroblast of lung male adult 45 years H3K4me3 signal 2 319 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/57cb231c-7a58-4197-8230-3d219dbe7ac4/ENCFF654UDL.bigWig\ color 255,0,0\ longLabel Fibroblast of lung male adult 45 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DWZ Signal\ track wgEncodeReg4Epigenetics_ENCFF654UDL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF666KUJ ENCSR257NIR + strand bigWig Peyer's patch tissue male adult (54 years) + strand total RNA-seq signal 2 319 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/9e82be81-5e52-4861-88e5-9184d6dc84da/ENCFF666KUJ.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR257NIR + strand\ track wgEncodeReg4RnaSeq_ENCFF666KUJ\ type bigWig\ visibility full\ encTfChipPkENCFF091UDB HeLa-S3 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HeLa-S3 from ENCODE 3 (ENCFF091UDB) 0 319 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HeLa-S3 from ENCODE 3 (ENCFF091UDB)\ parent encTfChipPk on\ shortLabel HeLa-S3 GABPA\ subGroups cellType=HeLa-S3 factor=GABPA\ track encTfChipPkENCFF091UDB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_fwd Tc:ARPE-19Emt_02hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward 0 319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_fwd Tc:ARPE-19Emt_02hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward 1 319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ENCFF694HBV ENCFF694HBV bigWig Peyers patch, male adult (54 years): (5) CTCF, ENCFF694HBV 2 320 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF694HBV.bw\ color 0,176,240\ longLabel Peyers patch, male adult (54 years): (5) CTCF, ENCFF694HBV\ maxHeightPixels 30\ parent CTCF_view off\ priority 130.4\ shortLabel ENCFF694HBV\ subGroups organ=small_intestine view=CTCF_view simpleBiosample=Peyers_patch-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF694HBV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF565AWY ENCSR000BMI Peak bigBed 5 GM12878 SRF peaks 4 320 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/606ca3d3-e30d-45d4-a3c2-4068cd271728/ENCFF565AWY.bigBed\ labelFields none\ longLabel GM12878 SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF565AWY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF763ZKS ENCSR000DXD Peak bigBed 5 Epithelial cell of proximal tubule CTCF peak 4 320 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/6d2598a8-8d99-4fb9-90cf-50b0b405f12c/ENCFF763ZKS.bigBed\ color 0,176,240\ labelFields none\ longLabel Epithelial cell of proximal tubule CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXD Peak\ track wgEncodeReg4Epigenetics_ENCFF763ZKS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF466VSY ENCSR257NIR - strand bigWig Peyer's patch tissue male adult (54 years) - strand total RNA-seq signal 2 320 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/11815e98-9587-41ae-b856-1563636a824c/ENCFF466VSY.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR257NIR - strand\ track wgEncodeReg4RnaSeq_ENCFF466VSY\ type bigWig\ visibility full\ encTfChipPkENCFF672LKL HeLa-S3 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in HeLa-S3 from ENCODE 3 (ENCFF672LKL) 0 320 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in HeLa-S3 from ENCODE 3 (ENCFF672LKL)\ parent encTfChipPk off\ shortLabel HeLa-S3 MAFF\ subGroups cellType=HeLa-S3 factor=MAFF\ track encTfChipPkENCFF672LKL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_rev Tc:ARPE-19Emt_02hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse 0 320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_rev Tc:ARPE-19Emt_02hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse 1 320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2002hr30min%2c%20biol_rep3.CNhs14490.13651-147B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 02hr30min, biol_rep3_CNhs14490_13651-147B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13651-147B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha02hr30minBiolRep3_CNhs14490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13651-147B6\ urlLabel FANTOM5 Details:\ ENCFF945PHV ENCFF945PHV bigWig Peyers patch, female adult (53 years): (5) CTCF, ENCFF945PHV 2 321 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF945PHV.bw\ color 0,176,240\ longLabel Peyers patch, female adult (53 years): (5) CTCF, ENCFF945PHV\ maxHeightPixels 30\ parent CTCF_view off\ priority 128.4\ shortLabel ENCFF945PHV\ subGroups organ=small_intestine view=CTCF_view simpleBiosample=Peyers_patch-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF945PHV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF683VIM ENCSR000BMI Signal bigWig GM12878 SRF ENCSR000BMI signal 2 321 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e5c86e8e-971b-4bf0-aade-c818c55ea6d3/ENCFF683VIM.bigWig\ color 254,75,173\ longLabel GM12878 SRF ENCSR000BMI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMI Signal\ track wgEncodeReg4TfChip_ENCFF683VIM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF874ELT ENCSR000DXD Signal bigWig Epithelial cell of proximal tubule CTCF signal 2 321 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/4490f129-38db-4fb4-bbc2-dd30953f68cc/ENCFF874ELT.bigWig\ color 0,176,240\ longLabel Epithelial cell of proximal tubule CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXD Signal\ track wgEncodeReg4Epigenetics_ENCFF874ELT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF239BUM ENCSR258ELN + strand bigWig Spleen tissue female adult (59 years) + strand total RNA-seq signal 2 321 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/0ae01a6b-9eaf-4b73-b871-d703cfae4aee/ENCFF239BUM.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR258ELN + strand\ track wgEncodeReg4RnaSeq_ENCFF239BUM\ type bigWig\ visibility full\ encTfChipPkENCFF328IZQ HeLa-S3 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HeLa-S3 from ENCODE 3 (ENCFF328IZQ) 0 321 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HeLa-S3 from ENCODE 3 (ENCFF328IZQ)\ parent encTfChipPk on\ shortLabel HeLa-S3 MAFK\ subGroups cellType=HeLa-S3 factor=MAFK\ track encTfChipPkENCFF328IZQ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_fwd Tc:ARPE-19Emt_03hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward 0 321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_fwd Tc:ARPE-19Emt_03hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward 1 321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ENCFF758HAD ENCFF758HAD bigWig Peyers patch, male adult (37 years): (5) CTCF, ENCFF758HAD 2 322 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF758HAD.bw\ color 0,176,240\ longLabel Peyers patch, male adult (37 years): (5) CTCF, ENCFF758HAD\ maxHeightPixels 30\ parent CTCF_view off\ priority 129.4\ shortLabel ENCFF758HAD\ subGroups organ=small_intestine view=CTCF_view simpleBiosample=Peyers_patch-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF758HAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF508RDJ ENCSR000BML Peak bigBed 5 HCT116 POLR2AphosphoS5 peaks 4 322 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0d33d891-9554-457c-976b-2c315c802c67/ENCFF508RDJ.bigBed\ labelFields none\ longLabel HCT116 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BML Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF508RDJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF675TZV ENCSR000DXF Peak bigBed 5 Epithelial cell of proximal tubule H3K4me3 peak 4 322 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/970f30ac-ec43-4e2d-a6cf-2b340544eb63/ENCFF675TZV.bigBed\ color 255,0,0\ longLabel Epithelial cell of proximal tubule H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXF Peak\ track wgEncodeReg4Epigenetics_ENCFF675TZV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF754QRX ENCSR258ELN - strand bigWig Spleen tissue female adult (59 years) - strand total RNA-seq signal 2 322 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/afbd409c-81a4-4878-96b8-6b521fd82b64/ENCFF754QRX.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR258ELN - strand\ track wgEncodeReg4RnaSeq_ENCFF754QRX\ type bigWig\ visibility full\ encTfChipPkENCFF305KIK HeLa-S3 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in HeLa-S3 from ENCODE 3 (ENCFF305KIK) 0 322 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in HeLa-S3 from ENCODE 3 (ENCFF305KIK)\ parent encTfChipPk off\ shortLabel HeLa-S3 NFE2L2\ subGroups cellType=HeLa-S3 factor=NFE2L2\ track encTfChipPkENCFF305KIK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_rev Tc:ARPE-19Emt_03hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse 0 322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_rev Tc:ARPE-19Emt_03hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse 1 322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep1.CNhs14491.13652-147B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep1_CNhs14491_13652-147B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13652-147B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep1_CNhs14491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13652-147B7\ urlLabel FANTOM5 Details:\ ENCFF806GMH ENCFF806GMH bigWig Spleen, female adult (61 years): (5) CTCF, ENCFF806GMH 2 323 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF806GMH.bw\ color 0,176,240\ longLabel Spleen, female adult (61 years): (5) CTCF, ENCFF806GMH\ maxHeightPixels 30\ parent CTCF_view off\ priority 142.4\ shortLabel ENCFF806GMH\ subGroups organ=spleen view=CTCF_view simpleBiosample=spleen-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeCtcf\ track ENCFF806GMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF855XPI ENCSR000BML Signal bigWig HCT116 POLR2AphosphoS5 ENCSR000BML signal 2 323 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ea6b4da8-71d8-40e2-bf0c-3eada889dfe7/ENCFF855XPI.bigWig\ color 86,86,36\ longLabel HCT116 POLR2AphosphoS5 ENCSR000BML signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BML Signal\ track wgEncodeReg4TfChip_ENCFF855XPI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF223PYO ENCSR000DXF Signal bigWig Epithelial cell of proximal tubule H3K4me3 signal 2 323 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/5a00119b-3bb0-495b-b63b-f409dcaba857/ENCFF223PYO.bigWig\ color 255,0,0\ longLabel Epithelial cell of proximal tubule H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXF Signal\ track wgEncodeReg4Epigenetics_ENCFF223PYO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF393ZMQ ENCSR264VJN + strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 323 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/794d0a66-3ba6-4768-a651-eada7e535ba3/ENCFF393ZMQ.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR264VJN + strand\ track wgEncodeReg4RnaSeq_ENCFF393ZMQ\ type bigWig\ visibility full\ encTfChipPkENCFF246QVY HeLa-S3 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in HeLa-S3 from ENCODE 3 (ENCFF246QVY) 0 323 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in HeLa-S3 from ENCODE 3 (ENCFF246QVY)\ parent encTfChipPk off\ shortLabel HeLa-S3 POLR2A\ subGroups cellType=HeLa-S3 factor=POLR2A\ track encTfChipPkENCFF246QVY\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_fwd Tc:ARPE-19Emt_03hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward 0 323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_fwd Tc:ARPE-19Emt_03hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward 1 323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ENCFF215HQE ENCFF215HQE bigWig Spleen, female adult (41 years): (5) CTCF, ENCFF215HQE 2 324 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF215HQE.bw\ color 0,176,240\ longLabel Spleen, female adult (41 years): (5) CTCF, ENCFF215HQE\ maxHeightPixels 30\ parent CTCF_view off\ priority 139.4\ shortLabel ENCFF215HQE\ subGroups organ=spleen view=CTCF_view simpleBiosample=spleen-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeCtcf\ track ENCFF215HQE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF911DTC ENCSR000BMN Peak bigBed 5 HeLa-S3 REST peaks 4 324 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/20a3a2e4-7024-45d7-b3eb-a3d5021ae8c4/ENCFF911DTC.bigBed\ labelFields none\ longLabel HeLa-S3 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF911DTC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF500SEA ENCSR000DXI Peak bigBed 5 Bronchial epithelial cell CTCF peak 4 324 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/812db8f4-4d0f-447a-96a6-2357fc223ff9/ENCFF500SEA.bigBed\ color 0,176,240\ labelFields none\ longLabel Bronchial epithelial cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXI Peak\ track wgEncodeReg4Epigenetics_ENCFF500SEA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF591IUP ENCSR264VJN - strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 324 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/253464ec-8656-422b-ba75-b1e53e7b60f6/ENCFF591IUP.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR264VJN - strand\ track wgEncodeReg4RnaSeq_ENCFF591IUP\ type bigWig\ visibility full\ encTfChipPkENCFF208NUB HeLa-S3 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in HeLa-S3 from ENCODE 3 (ENCFF208NUB) 0 324 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HeLa-S3 from ENCODE 3 (ENCFF208NUB)\ parent encTfChipPk off\ shortLabel HeLa-S3 REST\ subGroups cellType=HeLa-S3 factor=REST\ track encTfChipPkENCFF208NUB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_rev Tc:ARPE-19Emt_03hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse 0 324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_rev Tc:ARPE-19Emt_03hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse 1 324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep2.CNhs14492.13653-147B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep2_CNhs14492_13653-147B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13653-147B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep2_CNhs14492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13653-147B8\ urlLabel FANTOM5 Details:\ ENCFF722HFK ENCFF722HFK bigWig Spleen, female adult (53 years): (5) CTCF, ENCFF722HFK 2 325 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF722HFK.bw\ color 0,176,240\ longLabel Spleen, female adult (53 years): (5) CTCF, ENCFF722HFK\ maxHeightPixels 30\ parent CTCF_view off\ priority 140.4\ shortLabel ENCFF722HFK\ subGroups organ=spleen view=CTCF_view simpleBiosample=spleen-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF722HFK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF176JDN ENCSR000BMN Signal bigWig HeLa-S3 REST ENCSR000BMN signal 2 325 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ebb12c41-71af-4c78-8508-c81f6dcd4265/ENCFF176JDN.bigWig\ color 186,111,165\ longLabel HeLa-S3 REST ENCSR000BMN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMN Signal\ track wgEncodeReg4TfChip_ENCFF176JDN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF365EIN ENCSR000DXI Signal bigWig Bronchial epithelial cell CTCF signal 2 325 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/f039a3d0-6acd-4531-bcc7-fbaad5e9d83c/ENCFF365EIN.bigWig\ color 0,176,240\ longLabel Bronchial epithelial cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXI Signal\ track wgEncodeReg4Epigenetics_ENCFF365EIN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF420JDM ENCSR265EHG + strand bigWig Activated T-helper 17 cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal 2 325 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/1f226351-3b64-4764-9ffd-624989b640a0/ENCFF420JDM.bigWig\ color 254,75,173\ longLabel Activated T-helper 17 cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR265EHG + strand\ track wgEncodeReg4RnaSeq_ENCFF420JDM\ type bigWig\ visibility full\ encTfChipPkENCFF785YII HeLa-S3 SREBF2 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF2 in HeLa-S3 from ENCODE 3 (ENCFF785YII) 0 325 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SREBF2 in HeLa-S3 from ENCODE 3 (ENCFF785YII)\ parent encTfChipPk off\ shortLabel HeLa-S3 SREBF2\ subGroups cellType=HeLa-S3 factor=SREBF2\ track encTfChipPkENCFF785YII\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_fwd Tc:ARPE-19Emt_03hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward 0 325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_fwd Tc:ARPE-19Emt_03hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward 1 325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ENCFF161AWO ENCFF161AWO bigWig Spleen, female adult (59 years): (5) CTCF, ENCFF161AWO 2 326 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF161AWO.bw\ color 0,176,240\ longLabel Spleen, female adult (59 years): (5) CTCF, ENCFF161AWO\ maxHeightPixels 30\ parent CTCF_view off\ priority 141.4\ shortLabel ENCFF161AWO\ subGroups organ=spleen view=CTCF_view simpleBiosample=spleen-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeCtcf\ track ENCFF161AWO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF740VZW ENCSR000BMO Peak bigBed 5 HepG2 FOXA1 peaks 4 326 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/398311ba-90ea-4753-bd44-50ab97fa7ca6/ENCFF740VZW.bigBed\ labelFields none\ longLabel HepG2 FOXA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF740VZW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF864GWD ENCSR000DXJ Peak bigBed 5 Bronchial epithelial cell H3K4me3 peak 4 326 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/2872c4ec-8cc7-41e4-86b5-a14a9d534806/ENCFF864GWD.bigBed\ color 255,0,0\ longLabel Bronchial epithelial cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXJ Peak\ track wgEncodeReg4Epigenetics_ENCFF864GWD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF419HYJ ENCSR265EHG - strand bigWig Activated T-helper 17 cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal 2 326 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/4b931166-e1b8-4981-ab0f-b60f494cc3c7/ENCFF419HYJ.bigWig\ color 254,75,173\ longLabel Activated T-helper 17 cell male adult (48 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR265EHG - strand\ track wgEncodeReg4RnaSeq_ENCFF419HYJ\ type bigWig\ visibility full\ encTfChipPkENCFF044DFE HeLa-S3 SUPT20H narrowPeak Transcription Factor ChIP-seq Peaks of SUPT20H in HeLa-S3 from ENCODE 3 (ENCFF044DFE) 0 326 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SUPT20H in HeLa-S3 from ENCODE 3 (ENCFF044DFE)\ parent encTfChipPk off\ shortLabel HeLa-S3 SUPT20H\ subGroups cellType=HeLa-S3 factor=SUPT20H\ track encTfChipPkENCFF044DFE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_rev Tc:ARPE-19Emt_03hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse 0 326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_rev Tc:ARPE-19Emt_03hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse 1 326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr00min%2c%20biol_rep3.CNhs14493.13654-147B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr00min, biol_rep3_CNhs14493_13654-147B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13654-147B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr00minBiolRep3_CNhs14493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13654-147B9\ urlLabel FANTOM5 Details:\ ENCFF919OEF ENCFF919OEF bigWig Stomach, female adult (51 years): (5) CTCF, ENCFF919OEF 2 327 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF919OEF.bw\ color 0,176,240\ longLabel Stomach, female adult (51 years): (5) CTCF, ENCFF919OEF\ maxHeightPixels 30\ parent CTCF_view off\ priority 143.4\ shortLabel ENCFF919OEF\ subGroups organ=stomach view=CTCF_view simpleBiosample=stomach-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF919OEF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF898NVJ ENCSR000BMO Signal bigWig HepG2 FOXA1 ENCSR000BMO signal 2 327 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/7be2eef8-1e79-4a63-9397-9f900083776c/ENCFF898NVJ.bigWig\ color 137,152,82\ longLabel HepG2 FOXA1 ENCSR000BMO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMO Signal\ track wgEncodeReg4TfChip_ENCFF898NVJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF167ZCR ENCSR000DXJ Signal bigWig Bronchial epithelial cell H3K4me3 signal 2 327 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/158566a3-43b7-4eac-baea-2b28da7d2d47/ENCFF167ZCR.bigWig\ color 255,0,0\ longLabel Bronchial epithelial cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXJ Signal\ track wgEncodeReg4Epigenetics_ENCFF167ZCR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF474WFJ ENCSR266PVZ + strand bigWig Right cardiac atrium tissue female adult (46 years) + strand total RNA-seq signal 2 327 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/4c9a79e1-35f4-44b1-904e-10d77136ae07/ENCFF474WFJ.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue female adult (46 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR266PVZ + strand\ track wgEncodeReg4RnaSeq_ENCFF474WFJ\ type bigWig\ visibility full\ encTfChipPkENCFF302RQH HeLa-S3 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in HeLa-S3 from ENCODE 3 (ENCFF302RQH) 0 327 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of TBP in HeLa-S3 from ENCODE 3 (ENCFF302RQH)\ parent encTfChipPk on\ shortLabel HeLa-S3 TBP\ subGroups cellType=HeLa-S3 factor=TBP\ track encTfChipPkENCFF302RQH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_fwd Tc:ARPE-19Emt_03hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward 0 327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_fwd Tc:ARPE-19Emt_03hr30minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward 1 327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ENCFF034PJC ENCFF034PJC bigWig Stomach, male adult (54 years): (5) CTCF, ENCFF034PJC 2 328 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF034PJC.bw\ color 0,176,240\ longLabel Stomach, male adult (54 years): (5) CTCF, ENCFF034PJC\ maxHeightPixels 30\ parent CTCF_view off\ priority 146.4\ shortLabel ENCFF034PJC\ subGroups organ=stomach view=CTCF_view simpleBiosample=stomach-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF034PJC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF092DJY ENCSR000BMQ Peak bigBed 5 GM12878 EGR1 peaks 4 328 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/4db77e4c-e98b-4b28-9c3b-94ef4cb98f34/ENCFF092DJY.bigBed\ labelFields none\ longLabel GM12878 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF092DJY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF853ZXY ENCSR000DXL Peak bigBed 5 SK-N-MC H3K4me3 peak 4 328 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/6241c745-99a6-44ab-97a2-724114d5fd4f/ENCFF853ZXY.bigBed\ color 255,0,0\ longLabel SK-N-MC H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXL Peak\ track wgEncodeReg4Epigenetics_ENCFF853ZXY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF810KRH ENCSR266PVZ - strand bigWig Right cardiac atrium tissue female adult (46 years) - strand total RNA-seq signal 2 328 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/b198572b-0464-4014-abaa-6716794ca4a0/ENCFF810KRH.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue female adult (46 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR266PVZ - strand\ track wgEncodeReg4RnaSeq_ENCFF810KRH\ type bigWig\ visibility full\ encTfChipPkENCFF834LQR HeLa-S3 UBTF narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in HeLa-S3 from ENCODE 3 (ENCFF834LQR) 0 328 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in HeLa-S3 from ENCODE 3 (ENCFF834LQR)\ parent encTfChipPk off\ shortLabel HeLa-S3 UBTF\ subGroups cellType=HeLa-S3 factor=UBTF\ track encTfChipPkENCFF834LQR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_rev Tc:ARPE-19Emt_03hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse 0 328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_rev Tc:ARPE-19Emt_03hr30minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse 1 328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep1.CNhs14494.13655-147C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep1_CNhs14494_13655-147C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13655-147C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep1_CNhs14494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13655-147C1\ urlLabel FANTOM5 Details:\ ENCFF807KJZ ENCFF807KJZ bigWig Stomach, female adult (53 years): (5) CTCF, ENCFF807KJZ 2 329 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF807KJZ.bw\ color 0,176,240\ longLabel Stomach, female adult (53 years): (5) CTCF, ENCFF807KJZ\ maxHeightPixels 30\ parent CTCF_view off\ priority 144.4\ shortLabel ENCFF807KJZ\ subGroups organ=stomach view=CTCF_view simpleBiosample=stomach-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF807KJZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF750YNG ENCSR000BMQ Signal bigWig GM12878 EGR1 ENCSR000BMQ signal 2 329 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/183b6ce5-ce9c-43b4-a8bf-10c696408b5e/ENCFF750YNG.bigWig\ color 254,75,173\ longLabel GM12878 EGR1 ENCSR000BMQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMQ Signal\ track wgEncodeReg4TfChip_ENCFF750YNG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF521JLW ENCSR000DXL Signal bigWig SK-N-MC H3K4me3 signal 2 329 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/7f0e73af-2c7a-42d3-b9f6-1c4305dc81ab/ENCFF521JLW.bigWig\ color 255,0,0\ longLabel SK-N-MC H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXL Signal\ track wgEncodeReg4Epigenetics_ENCFF521JLW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF758KBC ENCSR266SBI + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 329 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/4ffb49a0-5a8b-4fff-b5f8-abee093d4bf4/ENCFF758KBC.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR266SBI + strand\ track wgEncodeReg4RnaSeq_ENCFF758KBC\ type bigWig\ visibility full\ encTfChipPkENCFF267DZF HeLa-S3 ZHX1 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX1 in HeLa-S3 from ENCODE 3 (ENCFF267DZF) 0 329 157 85 255 206 170 255 0 0 0 regulation 1 color 157,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZHX1 in HeLa-S3 from ENCODE 3 (ENCFF267DZF)\ parent encTfChipPk off\ shortLabel HeLa-S3 ZHX1\ subGroups cellType=HeLa-S3 factor=ZHX1\ track encTfChipPkENCFF267DZF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_fwd Tc:ARPE-19Emt_03hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward 0 329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_fwd Tc:ARPE-19Emt_03hr30minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward 1 329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ENCFF324HRF ENCFF324HRF bigWig Stomach, male adult (37 years): (5) CTCF, ENCFF324HRF 2 330 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF324HRF.bw\ color 0,176,240\ longLabel Stomach, male adult (37 years): (5) CTCF, ENCFF324HRF\ maxHeightPixels 30\ parent CTCF_view off\ priority 145.4\ shortLabel ENCFF324HRF\ subGroups organ=stomach view=CTCF_view simpleBiosample=stomach-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF324HRF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF262YXJ ENCSR000BMR Peak bigBed 5 K562 POLR2A peaks 4 330 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/376eab5c-a975-45d4-b4ab-bc947feabaec/ENCFF262YXJ.bigBed\ labelFields none\ longLabel K562 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF262YXJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF812MNO ENCSR000DXQ Peak bigBed 5 SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours CTCF peak 4 330 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/f0ea90a7-8991-4c4b-aa61-43be394ec403/ENCFF812MNO.bigBed\ color 0,176,240\ labelFields none\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXQ Peak\ track wgEncodeReg4Epigenetics_ENCFF812MNO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF644PKV ENCSR266SBI - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 330 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/97e53c9e-03d8-46f5-a866-61db70225ff9/ENCFF644PKV.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR266SBI - strand\ track wgEncodeReg4RnaSeq_ENCFF644PKV\ type bigWig\ visibility full\ encTfChipPkENCFF627BHP HepG2 AGO1 narrowPeak Transcription Factor ChIP-seq Peaks of AGO1 in HepG2 from ENCODE 3 (ENCFF627BHP) 0 330 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of AGO1 in HepG2 from ENCODE 3 (ENCFF627BHP)\ parent encTfChipPk off\ shortLabel HepG2 AGO1\ subGroups cellType=HepG2 factor=AGO1\ track encTfChipPkENCFF627BHP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_rev Tc:ARPE-19Emt_03hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse 0 330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_rev Tc:ARPE-19Emt_03hr30minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse 1 330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep2.CNhs14495.13656-147C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep2_CNhs14495_13656-147C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13656-147C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep2_CNhs14495_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13656-147C2\ urlLabel FANTOM5 Details:\ ENCFF245HIM ENCFF245HIM bigWig Testis, male adult (54 years): (5) CTCF, ENCFF245HIM 2 331 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF245HIM.bw\ color 0,176,240\ longLabel Testis, male adult (54 years): (5) CTCF, ENCFF245HIM\ maxHeightPixels 30\ parent CTCF_view off\ priority 148.4\ shortLabel ENCFF245HIM\ subGroups organ=testis view=CTCF_view simpleBiosample=testis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF245HIM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF496FVA ENCSR000BMR Signal bigWig K562 POLR2A ENCSR000BMR signal 2 331 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/5065972e-fdc4-499b-9642-f9b99141eab1/ENCFF496FVA.bigWig\ color 254,75,173\ longLabel K562 POLR2A ENCSR000BMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMR Signal\ track wgEncodeReg4TfChip_ENCFF496FVA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF109BWI ENCSR000DXQ Signal bigWig SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours CTCF signal 2 331 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e04d30ab-93d5-4b14-9d58-7dc37febc88c/ENCFF109BWI.bigWig\ color 0,176,240\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXQ Signal\ track wgEncodeReg4Epigenetics_ENCFF109BWI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF355IGM ENCSR267FRL + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 + strand total RNA-seq signal 2 331 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/767e0455-7e4c-477a-92ab-285bda596c2f/ENCFF355IGM.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR267FRL + strand\ track wgEncodeReg4RnaSeq_ENCFF355IGM\ type bigWig\ visibility full\ encTfChipPkENCFF465FII HepG2 AGO2 narrowPeak Transcription Factor ChIP-seq Peaks of AGO2 in HepG2 from ENCODE 3 (ENCFF465FII) 0 331 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of AGO2 in HepG2 from ENCODE 3 (ENCFF465FII)\ parent encTfChipPk off\ shortLabel HepG2 AGO2\ subGroups cellType=HepG2 factor=AGO2\ track encTfChipPkENCFF465FII\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_fwd Tc:ARPE-19Emt_03hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward 0 331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_fwd Tc:ARPE-19Emt_03hr30minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward 1 331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ENCFF453LVK ENCFF453LVK bigWig Testis, male adult (37 years): (5) CTCF, ENCFF453LVK 2 332 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF453LVK.bw\ color 0,176,240\ longLabel Testis, male adult (37 years): (5) CTCF, ENCFF453LVK\ maxHeightPixels 30\ parent CTCF_view off\ priority 147.4\ shortLabel ENCFF453LVK\ subGroups organ=testis view=CTCF_view simpleBiosample=testis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF453LVK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF747ZPQ ENCSR000BMT Peak bigBed 5 H1 NANOG peaks 4 332 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f7f3443f-227c-4a95-9430-0b5d4d821654/ENCFF747ZPQ.bigBed\ labelFields none\ longLabel H1 NANOG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF747ZPQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF942DLB ENCSR000DXR Peak bigBed 5 SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours H3K4me3 peak 4 332 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/3f589f28-c620-4739-a7d0-352447aab1fa/ENCFF942DLB.bigBed\ color 255,0,0\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXR Peak\ track wgEncodeReg4Epigenetics_ENCFF942DLB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF646BWX ENCSR267FRL - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 - strand total RNA-seq signal 2 332 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/c845a1ef-18ac-456a-a4d0-adf5b0551f68/ENCFF646BWX.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR267FRL - strand\ track wgEncodeReg4RnaSeq_ENCFF646BWX\ type bigWig\ visibility full\ encTfChipPkENCFF247GXE HepG2 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in HepG2 from ENCODE 3 (ENCFF247GXE) 0 332 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in HepG2 from ENCODE 3 (ENCFF247GXE)\ parent encTfChipPk off\ shortLabel HepG2 ARID3A\ subGroups cellType=HepG2 factor=ARID3A\ track encTfChipPkENCFF247GXE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_rev Tc:ARPE-19Emt_03hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse 0 332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_rev Tc:ARPE-19Emt_03hr30minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse 1 332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2003hr30min%2c%20biol_rep3.CNhs14496.13657-147C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 03hr30min, biol_rep3_CNhs14496_13657-147C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13657-147C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha03hr30minBiolRep3_CNhs14496_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13657-147C3\ urlLabel FANTOM5 Details:\ ENCFF397CJU ENCFF397CJU bigWig Thyroid gland, female adult (51 years): (5) CTCF, ENCFF397CJU 2 333 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF397CJU.bw\ color 0,176,240\ longLabel Thyroid gland, female adult (51 years): (5) CTCF, ENCFF397CJU\ maxHeightPixels 30\ parent CTCF_view off\ priority 150.4\ shortLabel ENCFF397CJU\ subGroups organ=thyroid view=CTCF_view simpleBiosample=thyroid_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF397CJU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF512EZC ENCSR000BMT Signal bigWig H1 NANOG ENCSR000BMT signal 2 333 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/30de5c13-dca4-480e-b453-c71b809d943e/ENCFF512EZC.bigWig\ color 118,158,101\ longLabel H1 NANOG ENCSR000BMT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMT Signal\ track wgEncodeReg4TfChip_ENCFF512EZC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF153GVR ENCSR000DXR Signal bigWig SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours H3K4me3 signal 2 333 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/dd3e5529-b8f9-4466-a5af-c67f40e9b5ad/ENCFF153GVR.bigWig\ color 255,0,0\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXR Signal\ track wgEncodeReg4Epigenetics_ENCFF153GVR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF281UGH ENCSR272UNO + strand bigWig Tibial nerve tissue female adult (51 years) + strand total RNA-seq signal 2 333 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/a08813fc-a534-436f-a06e-bf761d34160f/ENCFF281UGH.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR272UNO + strand\ track wgEncodeReg4RnaSeq_ENCFF281UGH\ type bigWig\ visibility full\ encTfChipPkENCFF616WXJ HepG2 ARNT narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in HepG2 from ENCODE 3 (ENCFF616WXJ) 0 333 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in HepG2 from ENCODE 3 (ENCFF616WXJ)\ parent encTfChipPk off\ shortLabel HepG2 ARNT\ subGroups cellType=HepG2 factor=ARNT\ track encTfChipPkENCFF616WXJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_fwd Tc:ARPE-19Emt_04hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward 0 333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_fwd Tc:ARPE-19Emt_04hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward 1 333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ENCFF510THG ENCFF510THG bigWig Thyroid gland, male adult (54 years): (5) CTCF, ENCFF510THG 2 334 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF510THG.bw\ color 0,176,240\ longLabel Thyroid gland, male adult (54 years): (5) CTCF, ENCFF510THG\ maxHeightPixels 30\ parent CTCF_view off\ priority 153.4\ shortLabel ENCFF510THG\ subGroups organ=thyroid view=CTCF_view simpleBiosample=thyroid_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeCtcf\ track ENCFF510THG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF698ZAP ENCSR000BMU Peak bigBed 5 H1 POU5F1 peaks 4 334 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/713bbb2a-2be5-4cef-bb9e-77223ed5577e/ENCFF698ZAP.bigBed\ labelFields none\ longLabel H1 POU5F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF698ZAP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF940OSJ ENCSR000DXT Peak bigBed 5 Skeletal muscle cell H3K4me3 peak 4 334 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/e0dc8e5c-8ce3-495a-9ae4-5d40d2c22337/ENCFF940OSJ.bigBed\ color 255,0,0\ longLabel Skeletal muscle cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXT Peak\ track wgEncodeReg4Epigenetics_ENCFF940OSJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF433ZJK ENCSR272UNO - strand bigWig Tibial nerve tissue female adult (51 years) - strand total RNA-seq signal 2 334 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/e49a513d-1a92-4375-9253-bdcdcd528de1/ENCFF433ZJK.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR272UNO - strand\ track wgEncodeReg4RnaSeq_ENCFF433ZJK\ type bigWig\ visibility full\ encTfChipPkENCFF638IUM HepG2 ASH2L narrowPeak Transcription Factor ChIP-seq Peaks of ASH2L in HepG2 from ENCODE 3 (ENCFF638IUM) 0 334 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ASH2L in HepG2 from ENCODE 3 (ENCFF638IUM)\ parent encTfChipPk off\ shortLabel HepG2 ASH2L\ subGroups cellType=HepG2 factor=ASH2L\ track encTfChipPkENCFF638IUM\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_rev Tc:ARPE-19Emt_04hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse 0 334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_rev Tc:ARPE-19Emt_04hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse 1 334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep1.CNhs14497.13658-147C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep1_CNhs14497_13658-147C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13658-147C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep1_CNhs14497_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13658-147C4\ urlLabel FANTOM5 Details:\ ENCFF603TNI ENCFF603TNI bigWig Thyroid gland, female adult (53 years): (5) CTCF, ENCFF603TNI 2 335 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF603TNI.bw\ color 0,176,240\ longLabel Thyroid gland, female adult (53 years): (5) CTCF, ENCFF603TNI\ maxHeightPixels 30\ parent CTCF_view off\ priority 151.4\ shortLabel ENCFF603TNI\ subGroups organ=thyroid view=CTCF_view simpleBiosample=thyroid_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF603TNI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF106YHB ENCSR000BMU Signal bigWig H1 POU5F1 ENCSR000BMU signal 2 335 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/f299465c-2866-4196-976c-29fdef57d618/ENCFF106YHB.bigWig\ color 118,158,101\ longLabel H1 POU5F1 ENCSR000BMU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMU Signal\ track wgEncodeReg4TfChip_ENCFF106YHB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF895ZZX ENCSR000DXT Signal bigWig Skeletal muscle cell H3K4me3 signal 2 335 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/ebcd3725-9751-4110-ba26-207b5a26181b/ENCFF895ZZX.bigWig\ color 255,0,0\ longLabel Skeletal muscle cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXT Signal\ track wgEncodeReg4Epigenetics_ENCFF895ZZX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF587USA ENCSR275JSL + strand bigWig Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (73 years) + strand total RNA-seq signal 2 335 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/d0c3f313-7b88-425e-a1d7-3bdbb3accbe8/ENCFF587USA.bigWig\ color 155,155,18\ longLabel Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (73 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR275JSL + strand\ track wgEncodeReg4RnaSeq_ENCFF587USA\ type bigWig\ visibility full\ encTfChipPkENCFF089BQU HepG2 ATF2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in HepG2 from ENCODE 3 (ENCFF089BQU) 0 335 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in HepG2 from ENCODE 3 (ENCFF089BQU)\ parent encTfChipPk off\ shortLabel HepG2 ATF2\ subGroups cellType=HepG2 factor=ATF2\ track encTfChipPkENCFF089BQU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_fwd Tc:ARPE-19Emt_04hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward 0 335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_fwd Tc:ARPE-19Emt_04hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward 1 335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ENCFF874CKO ENCFF874CKO bigWig Thyroid gland, male adult (37 years): (5) CTCF, ENCFF874CKO 2 336 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF874CKO.bw\ color 0,176,240\ longLabel Thyroid gland, male adult (37 years): (5) CTCF, ENCFF874CKO\ maxHeightPixels 30\ parent CTCF_view off\ priority 152.4\ shortLabel ENCFF874CKO\ subGroups organ=thyroid view=CTCF_view simpleBiosample=thyroid_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeCtcf\ track ENCFF874CKO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF728OTE ENCSR000BMV Peak bigBed 5 K562 FOSL1 peaks 4 336 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/34ec7eb7-9cf8-4462-ba79-3b004c090b6d/ENCFF728OTE.bigBed\ labelFields none\ longLabel K562 FOSL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF728OTE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF183CHX ENCSR000DXU Peak bigBed 5 WERI-Rb-1 H3K4me3 peak 4 336 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/2b234205-f5ec-43b7-bb50-f18a0e4304a9/ENCFF183CHX.bigBed\ color 255,0,0\ longLabel WERI-Rb-1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXU Peak\ track wgEncodeReg4Epigenetics_ENCFF183CHX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF546RFS ENCSR275JSL - strand bigWig Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (73 years) - strand total RNA-seq signal 2 336 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/c7dda664-3a23-400f-8ab2-bfe93ff60a9f/ENCFF546RFS.bigWig\ color 155,155,18\ longLabel Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (73 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR275JSL - strand\ track wgEncodeReg4RnaSeq_ENCFF546RFS\ type bigWig\ visibility full\ encTfChipPkENCFF137OEY HepG2 ATF3 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in HepG2 from ENCODE 3 (ENCFF137OEY) 0 336 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in HepG2 from ENCODE 3 (ENCFF137OEY)\ parent encTfChipPk off\ shortLabel HepG2 ATF3\ subGroups cellType=HepG2 factor=ATF3\ track encTfChipPkENCFF137OEY\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_rev Tc:ARPE-19Emt_04hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse 0 336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_rev Tc:ARPE-19Emt_04hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse 1 336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep2.CNhs14498.13659-147C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep2_CNhs14498_13659-147C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13659-147C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep2_CNhs14498_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13659-147C5\ urlLabel FANTOM5 Details:\ ENCFF179RSE ENCFF179RSE bigWig HeLa-S3: (5) CTCF, ENCFF179RSE 2 337 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF179RSE.bw\ color 0,176,240\ longLabel HeLa-S3: (5) CTCF, ENCFF179RSE\ maxHeightPixels 30\ parent CTCF_view off\ priority 52.4\ shortLabel ENCFF179RSE\ subGroups organ=uterus view=CTCF_view simpleBiosample=HeLa-S3 biosampleType=cell_line donor=ENCDO000AAB dataType=typeCtcf\ track ENCFF179RSE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF135MPD ENCSR000BMV Signal bigWig K562 FOSL1 ENCSR000BMV signal 2 337 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1e116388-b6a9-47b9-ab44-cc7042df9825/ENCFF135MPD.bigWig\ color 254,75,173\ longLabel K562 FOSL1 ENCSR000BMV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMV Signal\ track wgEncodeReg4TfChip_ENCFF135MPD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF879CSG ENCSR000DXU Signal bigWig WERI-Rb-1 H3K4me3 signal 2 337 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/3db84a42-02ca-4f8e-b4ca-742118a5215a/ENCFF879CSG.bigWig\ color 255,0,0\ longLabel WERI-Rb-1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXU Signal\ track wgEncodeReg4Epigenetics_ENCFF879CSG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF289NIF ENCSR275SNI + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 337 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/40cad729-97ff-4116-9057-16c0b1057c94/ENCFF289NIF.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR275SNI + strand\ track wgEncodeReg4RnaSeq_ENCFF289NIF\ type bigWig\ visibility full\ encTfChipPkENCFF498YGH HepG2 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in HepG2 from ENCODE 3 (ENCFF498YGH) 0 337 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in HepG2 from ENCODE 3 (ENCFF498YGH)\ parent encTfChipPk off\ shortLabel HepG2 ATF7\ subGroups cellType=HepG2 factor=ATF7\ track encTfChipPkENCFF498YGH\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_fwd Tc:ARPE-19Emt_04hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward 0 337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_fwd Tc:ARPE-19Emt_04hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward 1 337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ENCFF700PHX ENCFF700PHX bigWig Uterus, female adult (53 years): (5) CTCF, ENCFF700PHX 2 338 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF700PHX.bw\ color 0,176,240\ longLabel Uterus, female adult (53 years): (5) CTCF, ENCFF700PHX\ maxHeightPixels 30\ parent CTCF_view off\ priority 167.4\ shortLabel ENCFF700PHX\ subGroups organ=uterus view=CTCF_view simpleBiosample=uterus-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF700PHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF430APM ENCSR000BMW Peak bigBed 5 K562 REST peaks 4 338 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/21c7a7f1-69d7-46d9-9286-59b006640a1b/ENCFF430APM.bigBed\ labelFields none\ longLabel K562 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF430APM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF349QKF ENCSR000DXW Peak bigBed 5 WERI-Rb-1 CTCF peak 4 338 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/7e8e4516-8134-45dd-a939-95943fa7386b/ENCFF349QKF.bigBed\ color 0,176,240\ labelFields none\ longLabel WERI-Rb-1 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXW Peak\ track wgEncodeReg4Epigenetics_ENCFF349QKF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF047QMV ENCSR275SNI - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 338 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/a83a2888-1c73-4dbe-bf76-fce970b22cab/ENCFF047QMV.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR275SNI - strand\ track wgEncodeReg4RnaSeq_ENCFF047QMV\ type bigWig\ visibility full\ encTfChipPkENCFF906FVB HepG2 ATM narrowPeak Transcription Factor ChIP-seq Peaks of ATM in HepG2 from ENCODE 3 (ENCFF906FVB) 0 338 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ATM in HepG2 from ENCODE 3 (ENCFF906FVB)\ parent encTfChipPk off\ shortLabel HepG2 ATM\ subGroups cellType=HepG2 factor=ATM\ track encTfChipPkENCFF906FVB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_rev Tc:ARPE-19Emt_04hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse 0 338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_rev Tc:ARPE-19Emt_04hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse 1 338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2004hr00min%2c%20biol_rep3.CNhs14499.13660-147C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 04hr00min, biol_rep3_CNhs14499_13660-147C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13660-147C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_04hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha04hr00minBiolRep3_CNhs14499_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13660-147C6\ urlLabel FANTOM5 Details:\ ENCFF258LTU ENCFF258LTU bigWig Vagina, female adult (51 years): (5) CTCF, ENCFF258LTU 2 339 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF258LTU.bw\ color 0,176,240\ longLabel Vagina, female adult (51 years): (5) CTCF, ENCFF258LTU\ maxHeightPixels 30\ parent CTCF_view off\ priority 168.4\ shortLabel ENCFF258LTU\ subGroups organ=vagina view=CTCF_view simpleBiosample=vagina-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeCtcf\ track ENCFF258LTU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF678DNB ENCSR000BMW Signal bigWig K562 REST ENCSR000BMW signal 2 339 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/dab99a1b-679a-4942-9fc0-101fa967abf1/ENCFF678DNB.bigWig\ color 254,75,173\ longLabel K562 REST ENCSR000BMW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMW Signal\ track wgEncodeReg4TfChip_ENCFF678DNB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF181ESK ENCSR000DXW Signal bigWig WERI-Rb-1 CTCF signal 2 339 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/75d43ba1-776b-4595-9f92-745a78396eca/ENCFF181ESK.bigWig\ color 0,176,240\ longLabel WERI-Rb-1 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXW Signal\ track wgEncodeReg4Epigenetics_ENCFF181ESK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF037OMX ENCSR276MMH + strand bigWig Adrenal gland tissue male adult (37 years) + strand total RNA-seq signal 2 339 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/2f0fefd5-ac79-4eac-9b38-b8075e656b41/ENCFF037OMX.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR276MMH + strand\ track wgEncodeReg4RnaSeq_ENCFF037OMX\ type bigWig\ visibility full\ encTfChipPkENCFF863ATX HepG2 BHLHE40 1 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF863ATX) 0 339 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF863ATX)\ parent encTfChipPk off\ shortLabel HepG2 BHLHE40 1\ subGroups cellType=HepG2 factor=BHLHE40\ track encTfChipPkENCFF863ATX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_fwd Tc:ARPE-19Emt_05hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward 0 339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_fwd Tc:ARPE-19Emt_05hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward 1 339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ENCFF704JSE ENCFF704JSE bigWig Vagina, female adult (53 years): (5) CTCF, ENCFF704JSE 2 340 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF704JSE.bw\ color 0,176,240\ longLabel Vagina, female adult (53 years): (5) CTCF, ENCFF704JSE\ maxHeightPixels 30\ parent CTCF_view off\ priority 169.4\ shortLabel ENCFF704JSE\ subGroups organ=vagina view=CTCF_view simpleBiosample=vagina-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeCtcf\ track ENCFF704JSE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF101UQZ ENCSR000BMY Peak bigBed 5 GM12878 RAD21 peaks 4 340 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/17d8c7eb-bf97-4736-a006-fb494441e9d5/ENCFF101UQZ.bigBed\ labelFields none\ longLabel GM12878 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF101UQZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF344CXQ ENCSR000DXY Peak bigBed 5 WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours H3K4me3 peak 4 340 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/a3fae6ba-2f85-401d-a163-f66b74dbc9dc/ENCFF344CXQ.bigBed\ color 255,0,0\ longLabel WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXY Peak\ track wgEncodeReg4Epigenetics_ENCFF344CXQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF476JTJ ENCSR276MMH - strand bigWig Adrenal gland tissue male adult (37 years) - strand total RNA-seq signal 2 340 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/14be0602-715b-474c-bdc9-d260e7182f34/ENCFF476JTJ.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR276MMH - strand\ track wgEncodeReg4RnaSeq_ENCFF476JTJ\ type bigWig\ visibility full\ encTfChipPkENCFF361YXC HepG2 BHLHE40 2 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF361YXC) 0 340 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in HepG2 from ENCODE 3 (ENCFF361YXC)\ parent encTfChipPk off\ shortLabel HepG2 BHLHE40 2\ subGroups cellType=HepG2 factor=BHLHE40\ track encTfChipPkENCFF361YXC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_rev Tc:ARPE-19Emt_05hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse 0 340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_rev Tc:ARPE-19Emt_05hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse 1 340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep1.CNhs14500.13661-147C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep1_CNhs14500_13661-147C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13661-147C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep1_CNhs14500_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13661-147C7\ urlLabel FANTOM5 Details:\ ENCFF693WYZ ENCFF693WYZ bigWig Adrenal gland, female adult (51 years): (2) DNase, ENCFF693WYZ 2 341 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF693WYZ.bw\ color 6,218,147\ longLabel Adrenal gland, female adult (51 years): (2) DNase, ENCFF693WYZ\ maxHeightPixels 30\ parent DNase_view off\ priority 3.1\ shortLabel ENCFF693WYZ\ subGroups organ=adrenal_gland view=DNase_view simpleBiosample=adrenal_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF693WYZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF496LTS ENCSR000BMY Signal bigWig GM12878 RAD21 ENCSR000BMY signal 2 341 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/a1bed19a-25a9-41e7-b93f-8f7a841ff035/ENCFF496LTS.bigWig\ color 254,75,173\ longLabel GM12878 RAD21 ENCSR000BMY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMY Signal\ track wgEncodeReg4TfChip_ENCFF496LTS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF791BNP ENCSR000DXY Signal bigWig WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours H3K4me3 signal 2 341 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/eac463f9-29ab-499a-ab56-d5d4fb003be3/ENCFF791BNP.bigWig\ color 255,0,0\ longLabel WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXY Signal\ track wgEncodeReg4Epigenetics_ENCFF791BNP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF682QRK ENCSR276QGJ + strand bigWig T-helper 17 cell male adult (48 years) + strand total RNA-seq signal 2 341 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/8cab0fbb-624a-445b-bec6-8f1a07397308/ENCFF682QRK.bigWig\ color 254,75,173\ longLabel T-helper 17 cell male adult (48 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR276QGJ + strand\ track wgEncodeReg4RnaSeq_ENCFF682QRK\ type bigWig\ visibility full\ encTfChipPkENCFF897ETK HepG2 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in HepG2 from ENCODE 3 (ENCFF897ETK) 0 341 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in HepG2 from ENCODE 3 (ENCFF897ETK)\ parent encTfChipPk off\ shortLabel HepG2 BRCA1\ subGroups cellType=HepG2 factor=BRCA1\ track encTfChipPkENCFF897ETK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_fwd Tc:ARPE-19Emt_05hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward 0 341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_fwd Tc:ARPE-19Emt_05hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward 1 341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ENCFF316SZE ENCFF316SZE bigWig Adrenal gland, male adult (54 years): (2) DNase, ENCFF316SZE 2 342 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF316SZE.bw\ color 6,218,147\ longLabel Adrenal gland, male adult (54 years): (2) DNase, ENCFF316SZE\ maxHeightPixels 30\ parent DNase_view off\ priority 6.1\ shortLabel ENCFF316SZE\ subGroups organ=adrenal_gland view=DNase_view simpleBiosample=adrenal_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF316SZE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF838BCU ENCSR000BMZ Peak bigBed 5 HepG2 ELF1 peaks 4 342 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/90719178-5d95-492f-8806-0eca53a088bb/ENCFF838BCU.bigBed\ labelFields none\ longLabel HepG2 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF838BCU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF756GJW ENCSR000DXZ Peak bigBed 5 WI38 H3K4me3 peak 4 342 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/45ea5e57-4bb7-4fa4-8172-9d249949aec1/ENCFF756GJW.bigBed\ color 255,0,0\ longLabel WI38 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXZ Peak\ track wgEncodeReg4Epigenetics_ENCFF756GJW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF928RQD ENCSR276QGJ - strand bigWig T-helper 17 cell male adult (48 years) - strand total RNA-seq signal 2 342 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/2d5ac043-7237-4e05-96cc-61711ca73ad8/ENCFF928RQD.bigWig\ color 254,75,173\ longLabel T-helper 17 cell male adult (48 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR276QGJ - strand\ track wgEncodeReg4RnaSeq_ENCFF928RQD\ type bigWig\ visibility full\ encTfChipPkENCFF736GHL HepG2 BRD4 narrowPeak Transcription Factor ChIP-seq Peaks of BRD4 in HepG2 from ENCODE 3 (ENCFF736GHL) 0 342 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of BRD4 in HepG2 from ENCODE 3 (ENCFF736GHL)\ parent encTfChipPk off\ shortLabel HepG2 BRD4\ subGroups cellType=HepG2 factor=BRD4\ track encTfChipPkENCFF736GHL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_rev Tc:ARPE-19Emt_05hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse 0 342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_rev Tc:ARPE-19Emt_05hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse 1 342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep2.CNhs14501.13662-147C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep2_CNhs14501_13662-147C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13662-147C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep2_CNhs14501_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13662-147C8\ urlLabel FANTOM5 Details:\ ENCFF237KCK ENCFF237KCK bigWig Adrenal gland, female adult (41 years): (2) DNase, ENCFF237KCK 2 343 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF237KCK.bw\ color 6,218,147\ longLabel Adrenal gland, female adult (41 years): (2) DNase, ENCFF237KCK\ maxHeightPixels 30\ parent DNase_view off\ priority 2.1\ shortLabel ENCFF237KCK\ subGroups organ=adrenal_gland view=DNase_view simpleBiosample=adrenal_gland-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeDNase\ track ENCFF237KCK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF534OBQ ENCSR000BMZ Signal bigWig HepG2 ELF1 ENCSR000BMZ signal 2 343 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/aeffb2c9-e646-4316-a351-f7da135c720c/ENCFF534OBQ.bigWig\ color 137,152,82\ longLabel HepG2 ELF1 ENCSR000BMZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BMZ Signal\ track wgEncodeReg4TfChip_ENCFF534OBQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF237RRL ENCSR000DXZ Signal bigWig WI38 H3K4me3 signal 2 343 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/44cfdbbe-f307-497f-bf53-966707f5ac47/ENCFF237RRL.bigWig\ color 255,0,0\ longLabel WI38 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DXZ Signal\ track wgEncodeReg4Epigenetics_ENCFF237RRL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF570WHH ENCSR277QAN + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 343 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/1051dcd9-28e8-4678-b158-ecf445a55053/ENCFF570WHH.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR277QAN + strand\ track wgEncodeReg4RnaSeq_ENCFF570WHH\ type bigWig\ visibility full\ encTfChipPkENCFF501QII HepG2 CBX2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX2 in HepG2 from ENCODE 3 (ENCFF501QII) 0 343 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CBX2 in HepG2 from ENCODE 3 (ENCFF501QII)\ parent encTfChipPk off\ shortLabel HepG2 CBX2\ subGroups cellType=HepG2 factor=CBX2\ track encTfChipPkENCFF501QII\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_fwd Tc:ARPE-19Emt_05hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward 0 343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_fwd Tc:ARPE-19Emt_05hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward 1 343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ENCFF518SGA ENCFF518SGA bigWig Adrenal gland, female adult (53 years): (2) DNase, ENCFF518SGA 2 344 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF518SGA.bw\ color 6,218,147\ longLabel Adrenal gland, female adult (53 years): (2) DNase, ENCFF518SGA\ maxHeightPixels 30\ parent DNase_view off\ priority 4.1\ shortLabel ENCFF518SGA\ subGroups organ=adrenal_gland view=DNase_view simpleBiosample=adrenal_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF518SGA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF375CMT ENCSR000BNA Peak bigBed 5 HepG2 ZBTB33 peaks 4 344 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/5049ea78-e652-48bc-aa37-b07695cdccea/ENCFF375CMT.bigBed\ labelFields none\ longLabel HepG2 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF375CMT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF841AXJ ENCSR000DYB Peak bigBed 5 WI38 CTCF peak 4 344 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/659f7074-2649-47ce-8203-6c2020663dcd/ENCFF841AXJ.bigBed\ color 0,176,240\ labelFields none\ longLabel WI38 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DYB Peak\ track wgEncodeReg4Epigenetics_ENCFF841AXJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF934RUY ENCSR277QAN - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 344 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/22e1aee1-5545-4006-8a3f-6ec087bcb6c5/ENCFF934RUY.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR277QAN - strand\ track wgEncodeReg4RnaSeq_ENCFF934RUY\ type bigWig\ visibility full\ encTfChipPkENCFF039LHY HepG2 CCAR2 narrowPeak Transcription Factor ChIP-seq Peaks of CCAR2 in HepG2 from ENCODE 3 (ENCFF039LHY) 0 344 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CCAR2 in HepG2 from ENCODE 3 (ENCFF039LHY)\ parent encTfChipPk off\ shortLabel HepG2 CCAR2\ subGroups cellType=HepG2 factor=CCAR2\ track encTfChipPkENCFF039LHY\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_rev Tc:ARPE-19Emt_05hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse 0 344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_rev Tc:ARPE-19Emt_05hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse 1 344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2005hr00min%2c%20biol_rep3.CNhs14518.13663-147C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 05hr00min, biol_rep3_CNhs14518_13663-147C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13663-147C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_05hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha05hr00minBiolRep3_CNhs14518_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13663-147C9\ urlLabel FANTOM5 Details:\ ENCFF801REE ENCFF801REE bigWig Adrenal gland, male adult (37 years): (2) DNase, ENCFF801REE 2 345 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF801REE.bw\ color 6,218,147\ longLabel Adrenal gland, male adult (37 years): (2) DNase, ENCFF801REE\ maxHeightPixels 30\ parent DNase_view off\ priority 5.1\ shortLabel ENCFF801REE\ subGroups organ=adrenal_gland view=DNase_view simpleBiosample=adrenal_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF801REE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF192DBG ENCSR000BNA Signal bigWig HepG2 ZBTB33 ENCSR000BNA signal 2 345 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/9561ed3d-75f6-434c-85ea-3572630368f3/ENCFF192DBG.bigWig\ color 137,152,82\ longLabel HepG2 ZBTB33 ENCSR000BNA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNA Signal\ track wgEncodeReg4TfChip_ENCFF192DBG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF902IOE ENCSR000DYB Signal bigWig WI38 CTCF signal 2 345 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/261c4be4-e250-44b6-aa6e-fe5f4f5128a4/ENCFF902IOE.bigWig\ color 0,176,240\ longLabel WI38 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000DYB Signal\ track wgEncodeReg4Epigenetics_ENCFF902IOE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF698OWI ENCSR278TQR + strand bigWig Heart right ventricle tissue male adult (66 years) + strand total RNA-seq signal 2 345 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/2972bfeb-1501-444c-ac83-ce3ce4b86a6c/ENCFF698OWI.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (66 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR278TQR + strand\ track wgEncodeReg4RnaSeq_ENCFF698OWI\ type bigWig\ visibility full\ encTfChipPkENCFF862DXR HepG2 CEBPB 1 narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF862DXR) 0 345 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF862DXR)\ parent encTfChipPk off\ shortLabel HepG2 CEBPB 1\ subGroups cellType=HepG2 factor=CEBPB\ track encTfChipPkENCFF862DXR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_fwd Tc:ARPE-19Emt_06hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward 0 345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_fwd Tc:ARPE-19Emt_06hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward 1 345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ENCFF414OGC ENCFF414OGC bigWig K562: (2) DNase, ENCFF414OGC 2 346 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF414OGC.bw\ color 6,218,147\ longLabel K562: (2) DNase, ENCFF414OGC\ maxHeightPixels 30\ parent DNase_view off\ priority 58.1\ shortLabel ENCFF414OGC\ subGroups organ=blood view=DNase_view simpleBiosample=K562 biosampleType=cell_line donor=ENCDO000AAD dataType=typeDNase\ track ENCFF414OGC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF148RLQ ENCSR000BND Peak bigBed 5 GM12878 ZEB1 peaks 4 346 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/99e1ce8f-f6f8-42a6-8e9d-958fdd821e18/ENCFF148RLQ.bigBed\ labelFields none\ longLabel GM12878 ZEB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BND Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF148RLQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF887MRH ENCSR000EFI Peak bigBed 5 IMR-90 CTCF peak 4 346 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/87e049c9-f49e-4e81-8579-96f5c9dff64e/ENCFF887MRH.bigBed\ color 0,176,240\ labelFields none\ longLabel IMR-90 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EFI Peak\ track wgEncodeReg4Epigenetics_ENCFF887MRH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF201YHH ENCSR278TQR - strand bigWig Heart right ventricle tissue male adult (66 years) - strand total RNA-seq signal 2 346 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/44ec8d49-f150-4695-bdca-9320a3288aa4/ENCFF201YHH.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (66 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR278TQR - strand\ track wgEncodeReg4RnaSeq_ENCFF201YHH\ type bigWig\ visibility full\ encTfChipPkENCFF915ZYE HepG2 CEBPB 2 narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF915ZYE) 0 346 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in HepG2 from ENCODE 3 (ENCFF915ZYE)\ parent encTfChipPk off\ shortLabel HepG2 CEBPB 2\ subGroups cellType=HepG2 factor=CEBPB\ track encTfChipPkENCFF915ZYE\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_rev Tc:ARPE-19Emt_06hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse 0 346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_rev Tc:ARPE-19Emt_06hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse 1 346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep1.CNhs14519.13664-147D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep1_CNhs14519_13664-147D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13664-147D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep1_CNhs14519_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13664-147D1\ urlLabel FANTOM5 Details:\ ENCFF428XFI ENCFF428XFI bigWig GM12878: (2) DNase, ENCFF428XFI 2 347 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF428XFI.bw\ color 6,218,147\ longLabel GM12878: (2) DNase, ENCFF428XFI\ maxHeightPixels 30\ parent DNase_view off\ priority 34.1\ shortLabel ENCFF428XFI\ subGroups organ=blood view=DNase_view simpleBiosample=GM12878 biosampleType=cell_line donor=ENCDO000AAK dataType=typeDNase\ track ENCFF428XFI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF006PJY ENCSR000BNE Peak bigBed 5 K562 EGR1 peaks 4 347 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d7073858-6e06-4853-8e6d-76d70aab4bd1/ENCFF006PJY.bigBed\ labelFields none\ longLabel K562 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF006PJY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF105FHL ENCSR000EFI Signal bigWig IMR-90 CTCF signal 2 347 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/dbb4db34-7720-46ec-a9ca-6b1c2d68ddc5/ENCFF105FHL.bigWig\ color 0,176,240\ longLabel IMR-90 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EFI Signal\ track wgEncodeReg4Epigenetics_ENCFF105FHL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF547YEW ENCSR282GZU + strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 347 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6b2e5c6e-3a41-4dac-82f5-eabe1be1770c/ENCFF547YEW.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR282GZU + strand\ track wgEncodeReg4RnaSeq_ENCFF547YEW\ type bigWig\ visibility full\ encTfChipPkENCFF148ABR HepG2 CHD4 narrowPeak Transcription Factor ChIP-seq Peaks of CHD4 in HepG2 from ENCODE 3 (ENCFF148ABR) 0 347 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD4 in HepG2 from ENCODE 3 (ENCFF148ABR)\ parent encTfChipPk off\ shortLabel HepG2 CHD4\ subGroups cellType=HepG2 factor=CHD4\ track encTfChipPkENCFF148ABR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_fwd Tc:ARPE-19Emt_06hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward 0 347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_fwd Tc:ARPE-19Emt_06hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward 1 347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ ENCFF339ZGM ENCFF339ZGM bigWig HL-60: (2) DNase, ENCFF339ZGM 2 348 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF339ZGM.bw\ color 6,218,147\ longLabel HL-60: (2) DNase, ENCFF339ZGM\ maxHeightPixels 30\ parent DNase_view off\ priority 56.1\ shortLabel ENCFF339ZGM\ subGroups organ=blood view=DNase_view simpleBiosample=HL-60 biosampleType=cell_line donor=ENCDO000AAM dataType=typeDNase\ track ENCFF339ZGM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF628OZF ENCSR000BNE Signal bigWig K562 EGR1 ENCSR000BNE signal 2 348 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/ac2038c5-f7fc-47ab-955d-f70995c87c69/ENCFF628OZF.bigWig\ color 254,75,173\ longLabel K562 EGR1 ENCSR000BNE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNE Signal\ track wgEncodeReg4TfChip_ENCFF628OZF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF269MOF ENCSR000EID Peak bigBed 5 8988T DNase peak 4 348 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/bbe7e89f-a6dd-4d39-a852-396373eae627/ENCFF269MOF.bigBed\ color 6,218,147\ labelFields none\ longLabel 8988T DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EID Peak\ track wgEncodeReg4Epigenetics_ENCFF269MOF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF223UFM ENCSR282GZU - strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 348 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/1dc5ebd4-f0cf-4d6a-b396-e9ee275ddcd8/ENCFF223UFM.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR282GZU - strand\ track wgEncodeReg4RnaSeq_ENCFF223UFM\ type bigWig\ visibility full\ encTfChipPkENCFF550TXR HepG2 CREB1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in HepG2 from ENCODE 3 (ENCFF550TXR) 0 348 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in HepG2 from ENCODE 3 (ENCFF550TXR)\ parent encTfChipPk off\ shortLabel HepG2 CREB1\ subGroups cellType=HepG2 factor=CREB1\ track encTfChipPkENCFF550TXR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_rev Tc:ARPE-19Emt_06hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse 0 348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_rev Tc:ARPE-19Emt_06hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse 1 348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep3.CNhs14522.13666-147D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep3_CNhs14522_13666-147D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13666-147D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep3_CNhs14522_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13666-147D3\ urlLabel FANTOM5 Details:\ ENCFF969JHD ENCFF969JHD bigWig DND-41: (2) DNase, ENCFF969JHD 2 349 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF969JHD.bw\ color 6,218,147\ longLabel DND-41: (2) DNase, ENCFF969JHD\ maxHeightPixels 30\ parent DNase_view off\ priority 24.1\ shortLabel ENCFF969JHD\ subGroups organ=blood view=DNase_view simpleBiosample=DND-41 biosampleType=cell_line donor=ENCDO183AAA dataType=typeDNase\ track ENCFF969JHD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF473ASZ ENCSR000BNG Peak bigBed 5 GM12878 MEF2C peaks 4 349 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1ad48f73-c888-4fb8-8d03-850caf150e9c/ENCFF473ASZ.bigBed\ labelFields none\ longLabel GM12878 MEF2C peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF473ASZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF140GVM ENCSR000EID Signal bigWig 8988T DNase signal 2 349 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/d584e576-2686-4faa-862d-7df1cda1ffe0/ENCFF140GVM.bigWig\ color 6,218,147\ longLabel 8988T DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EID Signal\ track wgEncodeReg4Epigenetics_ENCFF140GVM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF381SWT ENCSR282UMY + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 349 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/ae0482ad-09d3-43e8-bccc-33b2ea5b6363/ENCFF381SWT.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR282UMY + strand\ track wgEncodeReg4RnaSeq_ENCFF381SWT\ type bigWig\ visibility full\ encTfChipPkENCFF290UGF HepG2 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in HepG2 from ENCODE 3 (ENCFF290UGF) 0 349 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CREM in HepG2 from ENCODE 3 (ENCFF290UGF)\ parent encTfChipPk off\ shortLabel HepG2 CREM\ subGroups cellType=HepG2 factor=CREM\ track encTfChipPkENCFF290UGF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_fwd Tc:ARPE-19Emt_07hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward 0 349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_fwd Tc:ARPE-19Emt_07hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward 1 349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ENCFF136RNO ENCFF136RNO bigWig OCI-LY7: (2) DNase, ENCFF136RNO 2 350 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF136RNO.bw\ color 6,218,147\ longLabel OCI-LY7: (2) DNase, ENCFF136RNO\ maxHeightPixels 30\ parent DNase_view off\ priority 118.1\ shortLabel ENCFF136RNO\ subGroups organ=blood view=DNase_view simpleBiosample=OCI-LY7 biosampleType=cell_line donor=ENCDO351AAA dataType=typeDNase\ track ENCFF136RNO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF907FVJ ENCSR000BNG Signal bigWig GM12878 MEF2C ENCSR000BNG signal 2 350 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/2fcb6171-1102-4471-9bda-b4261bc9c40c/ENCFF907FVJ.bigWig\ color 254,75,173\ longLabel GM12878 MEF2C ENCSR000BNG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNG Signal\ track wgEncodeReg4TfChip_ENCFF907FVJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF627ZBL ENCSR000EIF Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak 4 350 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/84da9eac-40ed-4dc7-bf18-98721debd64c/ENCFF627ZBL.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIF Peak\ track wgEncodeReg4Epigenetics_ENCFF627ZBL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF682DCM ENCSR282UMY - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 350 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/03313c80-d275-4396-8677-a927a7347e2e/ENCFF682DCM.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR282UMY - strand\ track wgEncodeReg4RnaSeq_ENCFF682DCM\ type bigWig\ visibility full\ encTfChipPkENCFF543WTP HepG2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in HepG2 from ENCODE 3 (ENCFF543WTP) 0 350 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in HepG2 from ENCODE 3 (ENCFF543WTP)\ parent encTfChipPk off\ shortLabel HepG2 CTCF\ subGroups cellType=HepG2 factor=CTCF\ track encTfChipPkENCFF543WTP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_rev Tc:ARPE-19Emt_07hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse 0 350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_rev Tc:ARPE-19Emt_07hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse 1 350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep1.CNhs14523.13667-147D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep1_CNhs14523_13667-147D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13667-147D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep1_CNhs14523_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13667-147D4\ urlLabel FANTOM5 Details:\ ENCFF735XLO ENCFF735XLO bigWig MM.1S: (2) DNase, ENCFF735XLO 2 351 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF735XLO.bw\ color 6,218,147\ longLabel MM.1S: (2) DNase, ENCFF735XLO\ maxHeightPixels 30\ parent DNase_view off\ priority 115.1\ shortLabel ENCFF735XLO\ subGroups organ=blood view=DNase_view simpleBiosample=MM_1S biosampleType=cell_line donor=ENCDO697GBW dataType=typeDNase\ track ENCFF735XLO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF414GZI ENCSR000BNH Peak bigBed 5 H1 CTCF peaks 4 351 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ca58cddd-260f-4ab1-9dd1-aea131f4319a/ENCFF414GZI.bigBed\ labelFields none\ longLabel H1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF414GZI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF790XQN ENCSR000EIF Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal 2 351 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/c8ee8751-09f5-4bc5-a620-9d52dc07f3f0/ENCFF790XQN.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIF Signal\ track wgEncodeReg4Epigenetics_ENCFF790XQN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF189MNY ENCSR288RRZ + strand bigWig Placenta tissue male embryo + strand total RNA-seq signal 2 351 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/febc4a90-72e9-434b-8b9a-2bfb0c86068e/ENCFF189MNY.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR288RRZ + strand\ track wgEncodeReg4RnaSeq_ENCFF189MNY\ type bigWig\ visibility full\ encTfChipPkENCFF413RQL HepG2 EHMT2 narrowPeak Transcription Factor ChIP-seq Peaks of EHMT2 in HepG2 from ENCODE 3 (ENCFF413RQL) 0 351 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in HepG2 from ENCODE 3 (ENCFF413RQL)\ parent encTfChipPk off\ shortLabel HepG2 EHMT2\ subGroups cellType=HepG2 factor=EHMT2\ track encTfChipPkENCFF413RQL\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_fwd Tc:ARPE-19Emt_07hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward 0 351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_fwd Tc:ARPE-19Emt_07hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward 1 351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ENCFF389PZY ENCFF389PZY bigWig CD14-positive monocyte, female: (2) DNase, ENCFF389PZY 2 352 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF389PZY.bw\ color 6,218,147\ longLabel CD14-positive monocyte, female: (2) DNase, ENCFF389PZY\ maxHeightPixels 30\ parent DNase_view off\ priority 20.1\ shortLabel ENCFF389PZY\ subGroups organ=blood view=DNase_view simpleBiosample=CD14-positive_monocyte-_female biosampleType=primary_cell donor=ENCDO265AAA dataType=typeDNase\ track ENCFF389PZY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF038RVZ ENCSR000BNH Signal bigWig H1 CTCF ENCSR000BNH signal 2 352 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6ea3817b-9098-4bba-8774-4f4dd664b780/ENCFF038RVZ.bigWig\ color 118,158,101\ longLabel H1 CTCF ENCSR000BNH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNH Signal\ track wgEncodeReg4TfChip_ENCFF038RVZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF465CGT ENCSR000EIG Peak bigBed 5 T-helper 1 cell DNase peak 4 352 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/2b9881fd-a182-496e-9ac3-4fce1db4ea41/ENCFF465CGT.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIG Peak\ track wgEncodeReg4Epigenetics_ENCFF465CGT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF362JKC ENCSR288RRZ - strand bigWig Placenta tissue male embryo - strand total RNA-seq signal 2 352 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/c60410f7-622c-4902-827d-12dfaba6371f/ENCFF362JKC.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR288RRZ - strand\ track wgEncodeReg4RnaSeq_ENCFF362JKC\ type bigWig\ visibility full\ encTfChipPkENCFF840RWO HepG2 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in HepG2 from ENCODE 3 (ENCFF840RWO) 0 352 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in HepG2 from ENCODE 3 (ENCFF840RWO)\ parent encTfChipPk off\ shortLabel HepG2 ELF1\ subGroups cellType=HepG2 factor=ELF1\ track encTfChipPkENCFF840RWO\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_rev Tc:ARPE-19Emt_07hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse 0 352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_rev Tc:ARPE-19Emt_07hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse 1 352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep2.CNhs14524.13668-147D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep2_CNhs14524_13668-147D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13668-147D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep2_CNhs14524_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13668-147D5\ urlLabel FANTOM5 Details:\ ENCFF472WAW ENCFF472WAW bigWig Brain microvascular endothelial cell: (2) DNase, ENCFF472WAW 2 353 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF472WAW.bw\ color 6,218,147\ longLabel Brain microvascular endothelial cell: (2) DNase, ENCFF472WAW\ maxHeightPixels 30\ parent DNase_view off\ priority 16.1\ shortLabel ENCFF472WAW\ subGroups organ=blood_vessel view=DNase_view simpleBiosample=brain_microvascular_endothelial_cell biosampleType=primary_cell donor=ENCDO227AAA dataType=typeDNase\ track ENCFF472WAW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF533COJ ENCSR000BNI Peak bigBed 5 HepG2 FOXA2 peaks 4 353 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4966697e-19aa-4fd0-bdf6-abaab1d50506/ENCFF533COJ.bigBed\ labelFields none\ longLabel HepG2 FOXA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF533COJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF683GNU ENCSR000EIG Signal bigWig T-helper 1 cell DNase signal 2 353 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/568085d8-b082-4703-9b5a-3a56667d4596/ENCFF683GNU.bigWig\ color 6,218,147\ longLabel T-helper 1 cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIG Signal\ track wgEncodeReg4Epigenetics_ENCFF683GNU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF634JRF ENCSR290IHM + strand bigWig Dorsolateral prefrontal cortex tissue female adult (79 years) + strand total RNA-seq signal 2 353 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/1d365a5c-a66a-4b1c-9acc-2c3334234585/ENCFF634JRF.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (79 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR290IHM + strand\ track wgEncodeReg4RnaSeq_ENCFF634JRF\ type bigWig\ visibility full\ encTfChipPkENCFF806JJS HepG2 EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF806JJS) 0 353 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF806JJS)\ parent encTfChipPk off\ shortLabel HepG2 EP300 1\ subGroups cellType=HepG2 factor=EP300\ track encTfChipPkENCFF806JJS\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_fwd Tc:ARPE-19Emt_07hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward 0 353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_fwd Tc:ARPE-19Emt_07hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward 1 353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ENCFF707HLC ENCFF707HLC bigWig Ascending aorta, female adult (51 years): (2) DNase, ENCFF707HLC 2 354 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF707HLC.bw\ color 6,218,147\ longLabel Ascending aorta, female adult (51 years): (2) DNase, ENCFF707HLC\ maxHeightPixels 30\ parent DNase_view off\ priority 8.1\ shortLabel ENCFF707HLC\ subGroups organ=blood_vessel view=DNase_view simpleBiosample=ascending_aorta-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF707HLC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF302QCS ENCSR000BNI Signal bigWig HepG2 FOXA2 ENCSR000BNI signal 2 354 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1881cc2c-dc23-47ce-8834-ef21213fae2a/ENCFF302QCS.bigWig\ color 137,152,82\ longLabel HepG2 FOXA2 ENCSR000BNI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNI Signal\ track wgEncodeReg4TfChip_ENCFF302QCS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF700SDZ ENCSR000EII Peak bigBed 5 B cell female adult 27 years DNase peak 4 354 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/9ea72e74-60a9-4c34-9dc1-0ec35f026e1c/ENCFF700SDZ.bigBed\ color 6,218,147\ labelFields none\ longLabel B cell female adult 27 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EII Peak\ track wgEncodeReg4Epigenetics_ENCFF700SDZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF426XVD ENCSR290IHM - strand bigWig Dorsolateral prefrontal cortex tissue female adult (79 years) - strand total RNA-seq signal 2 354 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/3e647619-cc19-4ae7-81b6-625c610eaeb1/ENCFF426XVD.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (79 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR290IHM - strand\ track wgEncodeReg4RnaSeq_ENCFF426XVD\ type bigWig\ visibility full\ encTfChipPkENCFF674QCU HepG2 EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF674QCU) 0 354 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in HepG2 from ENCODE 3 (ENCFF674QCU)\ parent encTfChipPk off\ shortLabel HepG2 EP300 2\ subGroups cellType=HepG2 factor=EP300\ track encTfChipPkENCFF674QCU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_rev Tc:ARPE-19Emt_07hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse 0 354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_rev Tc:ARPE-19Emt_07hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse 1 354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2007hr00min%2c%20biol_rep3.CNhs14525.13669-147D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 07hr00min, biol_rep3_CNhs14525_13669-147D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13669-147D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_07hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha07hr00minBiolRep3_CNhs14525_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13669-147D6\ urlLabel FANTOM5 Details:\ ENCFF022SDS ENCFF022SDS bigWig Ascending aorta, female adult (53 years): (2) DNase, ENCFF022SDS 2 355 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF022SDS.bw\ color 6,218,147\ longLabel Ascending aorta, female adult (53 years): (2) DNase, ENCFF022SDS\ maxHeightPixels 30\ parent DNase_view off\ priority 9.1\ shortLabel ENCFF022SDS\ subGroups organ=blood_vessel view=DNase_view simpleBiosample=ascending_aorta-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF022SDS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF323ATZ ENCSR000BNJ Peak bigBed 5 HepG2 HNF4G peaks 4 355 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c354e144-39c3-4b7f-aa64-181aa9385f7e/ENCFF323ATZ.bigBed\ labelFields none\ longLabel HepG2 HNF4G peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF323ATZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF832BVB ENCSR000EII Signal bigWig B cell female adult 27 years DNase signal 2 355 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/79c5d719-e7fc-47ce-874e-74322e806428/ENCFF832BVB.bigWig\ color 6,218,147\ longLabel B cell female adult 27 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EII Signal\ track wgEncodeReg4Epigenetics_ENCFF832BVB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF960OZG ENCSR291TRJ + strand bigWig Endodermal cell + strand total RNA-seq signal 2 355 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/7dfea4d8-10ca-4759-8783-b90a8833914b/ENCFF960OZG.bigWig\ color 118,158,101\ longLabel Endodermal cell + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR291TRJ + strand\ track wgEncodeReg4RnaSeq_ENCFF960OZG\ type bigWig\ visibility full\ encTfChipPkENCFF128TUP HepG2 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in HepG2 from ENCODE 3 (ENCFF128TUP) 0 355 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in HepG2 from ENCODE 3 (ENCFF128TUP)\ parent encTfChipPk off\ shortLabel HepG2 ETS1\ subGroups cellType=HepG2 factor=ETS1\ track encTfChipPkENCFF128TUP\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_fwd Tc:ARPE-19Emt_08hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward 0 355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_fwd Tc:ARPE-19Emt_08hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward 1 355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ ENCFF383WYK ENCFF383WYK bigWig Coronary artery, female adult (53 years): (2) DNase, ENCFF383WYK 2 356 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF383WYK.bw\ color 6,218,147\ longLabel Coronary artery, female adult (53 years): (2) DNase, ENCFF383WYK\ maxHeightPixels 30\ parent DNase_view off\ priority 23.1\ shortLabel ENCFF383WYK\ subGroups organ=blood_vessel view=DNase_view simpleBiosample=coronary_artery-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF383WYK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF529BXW ENCSR000BNJ Signal bigWig HepG2 HNF4G ENCSR000BNJ signal 2 356 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3af78862-fdb9-49c4-89f1-276ea607a5d0/ENCFF529BXW.bigWig\ color 137,152,82\ longLabel HepG2 HNF4G ENCSR000BNJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNJ Signal\ track wgEncodeReg4TfChip_ENCFF529BXW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF378LCB ENCSR000EIJ Peak bigBed 5 Cerebellum tissue male adult 27 years and male adult 35 years DNase peak 4 356 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/52a4daaa-3c62-4ddf-96b0-180b69d2741c/ENCFF378LCB.bigBed\ color 6,218,147\ labelFields none\ longLabel Cerebellum tissue male adult 27 years and male adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIJ Peak\ track wgEncodeReg4Epigenetics_ENCFF378LCB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF981JCH ENCSR291TRJ - strand bigWig Endodermal cell - strand total RNA-seq signal 2 356 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/dfe584f2-7215-4dc0-a72f-fb5829645d17/ENCFF981JCH.bigWig\ color 118,158,101\ longLabel Endodermal cell - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR291TRJ - strand\ track wgEncodeReg4RnaSeq_ENCFF981JCH\ type bigWig\ visibility full\ encTfChipPkENCFF710CRT HepG2 ETV4 narrowPeak Transcription Factor ChIP-seq Peaks of ETV4 in HepG2 from ENCODE 3 (ENCFF710CRT) 0 356 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ETV4 in HepG2 from ENCODE 3 (ENCFF710CRT)\ parent encTfChipPk off\ shortLabel HepG2 ETV4\ subGroups cellType=HepG2 factor=ETV4\ track encTfChipPkENCFF710CRT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_rev Tc:ARPE-19Emt_08hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse 0 356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_rev Tc:ARPE-19Emt_08hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse 1 356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep1.CNhs14526.13670-147D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep1_CNhs14526_13670-147D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13670-147D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep1_CNhs14526_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13670-147D7\ urlLabel FANTOM5 Details:\ ENCFF013UBZ ENCFF013UBZ bigWig Tibial artery, male adult (37 years): (2) DNase, ENCFF013UBZ 2 357 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF013UBZ.bw\ color 6,218,147\ longLabel Tibial artery, male adult (37 years): (2) DNase, ENCFF013UBZ\ maxHeightPixels 30\ parent DNase_view off\ priority 154.1\ shortLabel ENCFF013UBZ\ subGroups organ=blood_vessel view=DNase_view simpleBiosample=tibial_artery-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF013UBZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF883NXC ENCSR000BNK Peak bigBed 5 K562 CTCFL peaks 4 357 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/dae86cbb-eea2-4666-9c58-8b20962547b2/ENCFF883NXC.bigBed\ labelFields none\ longLabel K562 CTCFL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF883NXC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF520MAO ENCSR000EIJ Signal bigWig Cerebellum tissue male adult 27 years and male adult 35 years DNase signal 2 357 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/696bc9d4-1587-484d-9432-1c5c75ada5b9/ENCFF520MAO.bigWig\ color 6,218,147\ longLabel Cerebellum tissue male adult 27 years and male adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIJ Signal\ track wgEncodeReg4Epigenetics_ENCFF520MAO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF030JXK ENCSR292TYT + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 357 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/cda0acb5-b568-423a-9a62-425fd9e8f1c7/ENCFF030JXK.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR292TYT + strand\ track wgEncodeReg4RnaSeq_ENCFF030JXK\ type bigWig\ visibility full\ encTfChipPkENCFF504QZJ HepG2 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in HepG2 from ENCODE 3 (ENCFF504QZJ) 0 357 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in HepG2 from ENCODE 3 (ENCFF504QZJ)\ parent encTfChipPk off\ shortLabel HepG2 EZH2\ subGroups cellType=HepG2 factor=EZH2\ track encTfChipPkENCFF504QZJ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_fwd Tc:ARPE-19Emt_08hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward 0 357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_fwd Tc:ARPE-19Emt_08hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward 1 357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ENCFF156LUX ENCFF156LUX bigWig Thoracic aorta, male adult (37 years): (2) DNase, ENCFF156LUX 2 358 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF156LUX.bw\ color 6,218,147\ longLabel Thoracic aorta, male adult (37 years): (2) DNase, ENCFF156LUX\ maxHeightPixels 30\ parent DNase_view off\ priority 149.1\ shortLabel ENCFF156LUX\ subGroups organ=blood_vessel view=DNase_view simpleBiosample=thoracic_aorta-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF156LUX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF037JSC ENCSR000BNK Signal bigWig K562 CTCFL ENCSR000BNK signal 2 358 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/15c561de-ac65-4eb8-bbee-6b09a9f155b8/ENCFF037JSC.bigWig\ color 254,75,173\ longLabel K562 CTCFL ENCSR000BNK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNK Signal\ track wgEncodeReg4TfChip_ENCFF037JSC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF825PLH ENCSR000EIK Peak bigBed 5 Frontal cortex tissue male adult 27 years and male adult 35 years DNase peak 4 358 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/99875578-3d2c-4757-8c0b-be66f31604cf/ENCFF825PLH.bigBed\ color 6,218,147\ labelFields none\ longLabel Frontal cortex tissue male adult 27 years and male adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIK Peak\ track wgEncodeReg4Epigenetics_ENCFF825PLH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF336NCQ ENCSR292TYT - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 358 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/fd2f7fef-2e6d-4496-af79-f9ac30ec182d/ENCFF336NCQ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR292TYT - strand\ track wgEncodeReg4RnaSeq_ENCFF336NCQ\ type bigWig\ visibility full\ encTfChipPkENCFF031LBW HepG2 FIP1L1 narrowPeak Transcription Factor ChIP-seq Peaks of FIP1L1 in HepG2 from ENCODE 3 (ENCFF031LBW) 0 358 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FIP1L1 in HepG2 from ENCODE 3 (ENCFF031LBW)\ parent encTfChipPk off\ shortLabel HepG2 FIP1L1\ subGroups cellType=HepG2 factor=FIP1L1\ track encTfChipPkENCFF031LBW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_rev Tc:ARPE-19Emt_08hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse 0 358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_rev Tc:ARPE-19Emt_08hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse 1 358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep2.CNhs14527.13671-147D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep2_CNhs14527_13671-147D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13671-147D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep2_CNhs14527_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13671-147D8\ urlLabel FANTOM5 Details:\ ENCFF226FAT ENCFF226FAT bigWig Osteocyte, female embryo (5 days): (2) DNase, ENCFF226FAT 2 359 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF226FAT.bw\ color 6,218,147\ longLabel Osteocyte, female embryo (5 days): (2) DNase, ENCFF226FAT\ maxHeightPixels 30\ parent DNase_view off\ priority 119.1\ shortLabel ENCFF226FAT\ subGroups organ=bone view=DNase_view simpleBiosample=osteocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF226FAT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF891GNQ ENCSR000BNL Peak bigBed 5 K562 SP2 peaks 4 359 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/5c095a2b-8661-423e-bd23-b83b2073bdb9/ENCFF891GNQ.bigBed\ labelFields none\ longLabel K562 SP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF891GNQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF599TLO ENCSR000EIK Signal bigWig Frontal cortex tissue male adult 27 years and male adult 35 years DNase signal 2 359 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/d3f97219-525a-45de-8f4f-bb8d1dd34be0/ENCFF599TLO.bigWig\ color 6,218,147\ longLabel Frontal cortex tissue male adult 27 years and male adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIK Signal\ track wgEncodeReg4Epigenetics_ENCFF599TLO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF846UWT ENCSR294AKN + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 + strand total RNA-seq signal 2 359 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/224dfc0a-0596-403d-98b6-792f4cf3d29d/ENCFF846UWT.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR294AKN + strand\ track wgEncodeReg4RnaSeq_ENCFF846UWT\ type bigWig\ visibility full\ encTfChipPkENCFF054ESU HepG2 FOSL2 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL2 in HepG2 from ENCODE 3 (ENCFF054ESU) 0 359 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOSL2 in HepG2 from ENCODE 3 (ENCFF054ESU)\ parent encTfChipPk off\ shortLabel HepG2 FOSL2\ subGroups cellType=HepG2 factor=FOSL2\ track encTfChipPkENCFF054ESU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_fwd Tc:ARPE-19Emt_08hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward 0 359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_fwd Tc:ARPE-19Emt_08hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward 1 359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ENCFF146ZBO ENCFF146ZBO bigWig NCI-H929: (2) DNase, ENCFF146ZBO 2 360 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF146ZBO.bw\ color 6,218,147\ longLabel NCI-H929: (2) DNase, ENCFF146ZBO\ maxHeightPixels 30\ parent DNase_view off\ priority 116.1\ shortLabel ENCFF146ZBO\ subGroups organ=bone_marrow view=DNase_view simpleBiosample=NCI-H929 biosampleType=cell_line donor=ENCDO220OYR dataType=typeDNase\ track ENCFF146ZBO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF612GEX ENCSR000BNL Signal bigWig K562 SP2 ENCSR000BNL signal 2 360 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/0e90dfd4-f03d-4b59-8e33-58fe1028dc20/ENCFF612GEX.bigWig\ color 254,75,173\ longLabel K562 SP2 ENCSR000BNL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNL Signal\ track wgEncodeReg4TfChip_ENCFF612GEX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF666QMR ENCSR000EIL Peak bigBed 5 Chorion tissue DNase peak 4 360 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/891537b2-d82f-42ac-9558-35906fe2c052/ENCFF666QMR.bigBed\ color 6,218,147\ labelFields none\ longLabel Chorion tissue DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIL Peak\ track wgEncodeReg4Epigenetics_ENCFF666QMR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF599YXF ENCSR294AKN - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 - strand total RNA-seq signal 2 360 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/ebff4855-87b3-4188-83a9-e3ce67b9b0a9/ENCFF599YXF.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR294AKN - strand\ track wgEncodeReg4RnaSeq_ENCFF599YXF\ type bigWig\ visibility full\ encTfChipPkENCFF152BOT HepG2 FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF152BOT) 0 360 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF152BOT)\ parent encTfChipPk on\ shortLabel HepG2 FOXA1 1\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF152BOT\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_rev Tc:ARPE-19Emt_08hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse 0 360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_rev Tc:ARPE-19Emt_08hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse 1 360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2008hr00min%2c%20biol_rep3.CNhs14528.13672-147D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 08hr00min, biol_rep3_CNhs14528_13672-147D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13672-147D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_08hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha08hr00minBiolRep3_CNhs14528_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13672-147D9\ urlLabel FANTOM5 Details:\ ENCFF280RMA ENCFF280RMA bigWig SK-N-SH: (2) DNase, ENCFF280RMA 2 361 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF280RMA.bw\ color 6,218,147\ longLabel SK-N-SH: (2) DNase, ENCFF280RMA\ maxHeightPixels 30\ parent DNase_view off\ priority 138.1\ shortLabel ENCFF280RMA\ subGroups organ=brain view=DNase_view simpleBiosample=SK-N-SH biosampleType=cell_line donor=ENCDO000ABD dataType=typeDNase\ track ENCFF280RMA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF461SFY ENCSR000BNM Peak bigBed 5 K562 TAF7 peaks 4 361 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/9ace5b19-a09b-4c65-81d9-55c8704c7f26/ENCFF461SFY.bigBed\ labelFields none\ longLabel K562 TAF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF461SFY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF631YPY ENCSR000EIL Signal bigWig Chorion tissue DNase signal 2 361 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/594ab7e4-4319-44fb-b9fc-c71d24b8582d/ENCFF631YPY.bigWig\ color 6,218,147\ longLabel Chorion tissue DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIL Signal\ track wgEncodeReg4Epigenetics_ENCFF631YPY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF145OAS ENCSR296PMS + strand bigWig Stomach tissue male adult (54 years) + strand total RNA-seq signal 2 361 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/02c1fcbf-b927-45b9-b0fe-434ce3400693/ENCFF145OAS.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR296PMS + strand\ track wgEncodeReg4RnaSeq_ENCFF145OAS\ type bigWig\ visibility full\ encTfChipPkENCFF872MGU HepG2 FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF872MGU) 0 361 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF872MGU)\ parent encTfChipPk off\ shortLabel HepG2 FOXA1 2\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF872MGU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_fwd Tc:ARPE-19Emt_12hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward 0 361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_fwd Tc:ARPE-19Emt_12hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward 1 361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ENCFF286QGB ENCFF286QGB bigWig Neural progenitor cell, female embryo (5 days): (2) DNase, ENCFF286QGB 2 362 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF286QGB.bw\ color 6,218,147\ longLabel Neural progenitor cell, female embryo (5 days): (2) DNase, ENCFF286QGB\ maxHeightPixels 30\ parent DNase_view off\ priority 117.1\ shortLabel ENCFF286QGB\ subGroups organ=brain view=DNase_view simpleBiosample=neural_progenitor_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF286QGB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF457YNJ ENCSR000BNM Signal bigWig K562 TAF7 ENCSR000BNM signal 2 362 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/3fb067c7-cf38-4051-ad39-afd953fc9033/ENCFF457YNJ.bigWig\ color 254,75,173\ longLabel K562 TAF7 ENCSR000BNM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNM Signal\ track wgEncodeReg4TfChip_ENCFF457YNJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF415GNC ENCSR000EIN Peak bigBed 5 COLO829 DNase peak 4 362 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/9602bef7-fc37-460e-9795-0b5e47d4cf0d/ENCFF415GNC.bigBed\ color 6,218,147\ labelFields none\ longLabel COLO829 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIN Peak\ track wgEncodeReg4Epigenetics_ENCFF415GNC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF679RXH ENCSR296PMS - strand bigWig Stomach tissue male adult (54 years) - strand total RNA-seq signal 2 362 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/beaf9cd7-38ca-4b49-800e-bd77d9eddeae/ENCFF679RXH.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR296PMS - strand\ track wgEncodeReg4RnaSeq_ENCFF679RXH\ type bigWig\ visibility full\ encTfChipPkENCFF367TQC HepG2 FOXA1 3 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF367TQC) 0 362 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in HepG2 from ENCODE 3 (ENCFF367TQC)\ parent encTfChipPk off\ shortLabel HepG2 FOXA1 3\ subGroups cellType=HepG2 factor=FOXA1\ track encTfChipPkENCFF367TQC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_rev Tc:ARPE-19Emt_12hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse 0 362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_rev Tc:ARPE-19Emt_12hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse 1 362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep2.CNhs14530.13674-147E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep2_CNhs14530_13674-147E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13674-147E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep2_CNhs14530_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13674-147E2\ urlLabel FANTOM5 Details:\ ENCFF269VAY ENCFF269VAY bigWig Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (2) DNase, ENCFF269VAY 2 363 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF269VAY.bw\ color 6,218,147\ longLabel Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (2) DNase, ENCFF269VAY\ maxHeightPixels 30\ parent DNase_view off\ priority 33.1\ shortLabel ENCFF269VAY\ subGroups organ=brain view=DNase_view simpleBiosample=glutamatergic_neuron-_male_adult__53_years__male_adult__53_years__nuclear_fraction biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeDNase\ track ENCFF269VAY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF851EDE ENCSR000BNN Peak bigBed 5 K562 THAP1 peaks 4 363 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/daf840c6-19f1-47cc-987a-f78aab1e0890/ENCFF851EDE.bigBed\ labelFields none\ longLabel K562 THAP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF851EDE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF404EVT ENCSR000EIN Signal bigWig COLO829 DNase signal 2 363 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/9cd0a3a1-39d5-4d08-bd9a-d324232b34a0/ENCFF404EVT.bigWig\ color 6,218,147\ longLabel COLO829 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIN Signal\ track wgEncodeReg4Epigenetics_ENCFF404EVT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF585QCN ENCSR296RWI + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal 2 363 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/2706261e-aaa0-4129-bdd1-fa1b8280b541/ENCFF585QCN.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR296RWI + strand\ track wgEncodeReg4RnaSeq_ENCFF585QCN\ type bigWig\ visibility full\ encTfChipPkENCFF184NAC HepG2 FOXA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF184NAC) 0 363 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF184NAC)\ parent encTfChipPk off\ shortLabel HepG2 FOXA2 1\ subGroups cellType=HepG2 factor=FOXA2\ track encTfChipPkENCFF184NAC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_fwd Tc:ARPE-19Emt_12hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward 0 363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_fwd Tc:ARPE-19Emt_12hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward 1 363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ENCFF386FNE ENCFF386FNE bigWig Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (2) DNase, ENCFF386FNE 2 364 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF386FNE.bw\ color 6,218,147\ longLabel Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (2) DNase, ENCFF386FNE\ maxHeightPixels 30\ parent DNase_view off\ priority 12.1\ shortLabel ENCFF386FNE\ subGroups organ=brain view=DNase_view simpleBiosample=bipolar_neuron__treated_-_male_adult__53_years__treated_with_0_5_ug_mL_doxycycline_hyclate_for_4_days biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeDNase\ track ENCFF386FNE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF316VWM ENCSR000BNN Signal bigWig K562 THAP1 ENCSR000BNN signal 2 364 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/b88be798-aba4-4cf8-94ae-2086bd12c6b5/ENCFF316VWM.bigWig\ color 254,75,173\ longLabel K562 THAP1 ENCSR000BNN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNN Signal\ track wgEncodeReg4TfChip_ENCFF316VWM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF774PHC ENCSR000EIO Peak bigBed 5 Ishikawa treated with 10 nM 17β-estradiol for 30 minutes DNase peak 4 364 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/7e7972eb-5a49-4988-99ac-63c8ba8f5e2d/ENCFF774PHC.bigBed\ color 6,218,147\ labelFields none\ longLabel Ishikawa treated with 10 nM 17β-estradiol for 30 minutes DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIO Peak\ track wgEncodeReg4Epigenetics_ENCFF774PHC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF510OPM ENCSR296RWI - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal 2 364 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/bdccb00c-3282-46ea-b1f8-a54357058cb3/ENCFF510OPM.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR296RWI - strand\ track wgEncodeReg4RnaSeq_ENCFF510OPM\ type bigWig\ visibility full\ encTfChipPkENCFF259BJR HepG2 FOXA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF259BJR) 0 364 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in HepG2 from ENCODE 3 (ENCFF259BJR)\ parent encTfChipPk off\ shortLabel HepG2 FOXA2 2\ subGroups cellType=HepG2 factor=FOXA2\ track encTfChipPkENCFF259BJR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_rev Tc:ARPE-19Emt_12hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse 0 364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_rev Tc:ARPE-19Emt_12hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse 1 364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2012hr00min%2c%20biol_rep3.CNhs14531.13675-147E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 12hr00min, biol_rep3_CNhs14531_13675-147E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13675-147E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha12hr00minBiolRep3_CNhs14531_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13675-147E3\ urlLabel FANTOM5 Details:\ ENCFF926MIK ENCFF926MIK bigWig Astrocyte, male adult (53 years): (2) DNase, ENCFF926MIK 2 365 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF926MIK.bw\ color 6,218,147\ longLabel Astrocyte, male adult (53 years): (2) DNase, ENCFF926MIK\ maxHeightPixels 30\ parent DNase_view off\ priority 11.1\ shortLabel ENCFF926MIK\ subGroups organ=brain view=DNase_view simpleBiosample=astrocyte-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeDNase\ track ENCFF926MIK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF908JTL ENCSR000BNP Peak bigBed 5 GM12878 YY1 peaks 4 365 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/20c3f918-9588-4112-a2a7-b173faf6013c/ENCFF908JTL.bigBed\ labelFields none\ longLabel GM12878 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF908JTL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF178MHG ENCSR000EIO Signal bigWig Ishikawa treated with 10 nM 17β-estradiol for 30 minutes DNase signal 2 365 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/2fb2cc73-1a8e-4dff-946f-1154748e15bd/ENCFF178MHG.bigWig\ color 6,218,147\ longLabel Ishikawa treated with 10 nM 17β-estradiol for 30 minutes DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIO Signal\ track wgEncodeReg4Epigenetics_ENCFF178MHG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF430DVF ENCSR297AZN + strand bigWig CD4-positive, alpha-beta memory T cell male adult (43 years) + strand total RNA-seq signal 2 365 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/3cdd2d6b-1084-4868-9854-c2cdcb8be030/ENCFF430DVF.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta memory T cell male adult (43 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR297AZN + strand\ track wgEncodeReg4RnaSeq_ENCFF430DVF\ type bigWig\ visibility full\ encTfChipPkENCFF315CHX HepG2 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in HepG2 from ENCODE 3 (ENCFF315CHX) 0 365 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in HepG2 from ENCODE 3 (ENCFF315CHX)\ parent encTfChipPk off\ shortLabel HepG2 FOXK2\ subGroups cellType=HepG2 factor=FOXK2\ track encTfChipPkENCFF315CHX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_fwd Tc:ARPE-19Emt_16hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward 0 365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_fwd Tc:ARPE-19Emt_16hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward 1 365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ENCFF963PFR ENCFF963PFR bigWig Astrocyte: (2) DNase, ENCFF963PFR 2 366 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF963PFR.bw\ color 6,218,147\ longLabel Astrocyte: (2) DNase, ENCFF963PFR\ maxHeightPixels 30\ parent DNase_view off\ priority 10.1\ shortLabel ENCFF963PFR\ subGroups organ=brain view=DNase_view simpleBiosample=astrocyte biosampleType=primary_cell donor=ENCDO916IIE dataType=typeDNase\ track ENCFF963PFR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF408AOH ENCSR000BNP Signal bigWig GM12878 YY1 ENCSR000BNP signal 2 366 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/4fe7cd72-59c9-4982-a3ca-551611ca8fc3/ENCFF408AOH.bigWig\ color 254,75,173\ longLabel GM12878 YY1 ENCSR000BNP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNP Signal\ track wgEncodeReg4TfChip_ENCFF408AOH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF832OEQ ENCSR000EIP Peak bigBed 5 Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour DNase peak 4 366 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/a124cf4a-c93d-4857-bcc5-f32b3469664b/ENCFF832OEQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIP Peak\ track wgEncodeReg4Epigenetics_ENCFF832OEQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF105KNT ENCSR297AZN - strand bigWig CD4-positive, alpha-beta memory T cell male adult (43 years) - strand total RNA-seq signal 2 366 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/77195464-d4c0-4355-90e6-3860877b014d/ENCFF105KNT.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta memory T cell male adult (43 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR297AZN - strand\ track wgEncodeReg4RnaSeq_ENCFF105KNT\ type bigWig\ visibility full\ encTfChipPkENCFF029UJC HepG2 FOXP1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXP1 in HepG2 from ENCODE 3 (ENCFF029UJC) 0 366 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXP1 in HepG2 from ENCODE 3 (ENCFF029UJC)\ parent encTfChipPk off\ shortLabel HepG2 FOXP1\ subGroups cellType=HepG2 factor=FOXP1\ track encTfChipPkENCFF029UJC\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_rev Tc:ARPE-19Emt_16hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse 0 366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_rev Tc:ARPE-19Emt_16hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse 1 366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep1.CNhs14532.13676-147E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep1_CNhs14532_13676-147E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13676-147E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep1_CNhs14532_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13676-147E4\ urlLabel FANTOM5 Details:\ ENCFF796XMI ENCFF796XMI bigWig Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF796XMI 2 367 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF796XMI.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF796XMI\ maxHeightPixels 30\ parent DNase_view off\ priority 106.1\ shortLabel ENCFF796XMI\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO006DAA dataType=typeDNase\ track ENCFF796XMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF854PAY ENCSR000BNQ Peak bigBed 5 GM12878 BCL3 peaks 4 367 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/18a24ffe-163c-43c8-b7db-d5c16fc5aa3d/ENCFF854PAY.bigBed\ labelFields none\ longLabel GM12878 BCL3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF854PAY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF926OUY ENCSR000EIP Signal bigWig Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour DNase signal 2 367 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/f1e8bbe0-a2ea-4add-8e57-70a14b32d725/ENCFF926OUY.bigWig\ color 6,218,147\ longLabel Ishikawa treated with 0.02% dimethyl sulfoxide for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIP Signal\ track wgEncodeReg4Epigenetics_ENCFF926OUY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF258NBG ENCSR306IAW + strand bigWig T-cell male adult (42 years) + strand total RNA-seq signal 2 367 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/c25c22b6-1474-4fb7-bf33-5bc678c08c03/ENCFF258NBG.bigWig\ color 254,75,173\ longLabel T-cell male adult (42 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR306IAW + strand\ track wgEncodeReg4RnaSeq_ENCFF258NBG\ type bigWig\ visibility full\ encTfChipPkENCFF216YZI HepG2 FUS narrowPeak Transcription Factor ChIP-seq Peaks of FUS in HepG2 from ENCODE 3 (ENCFF216YZI) 0 367 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of FUS in HepG2 from ENCODE 3 (ENCFF216YZI)\ parent encTfChipPk off\ shortLabel HepG2 FUS\ subGroups cellType=HepG2 factor=FUS\ track encTfChipPkENCFF216YZI\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_fwd Tc:ARPE-19Emt_16hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward 0 367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_fwd Tc:ARPE-19Emt_16hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward 1 367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ENCFF799QGM ENCFF799QGM bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF799QGM 2 368 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF799QGM.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF799QGM\ maxHeightPixels 30\ parent DNase_view off\ priority 86.1\ shortLabel ENCFF799QGM\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO033BMB dataType=typeDNase\ track ENCFF799QGM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF546WTN ENCSR000BNQ Signal bigWig GM12878 BCL3 ENCSR000BNQ signal 2 368 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1af61d51-b2ef-4215-855a-f80b7cb838d5/ENCFF546WTN.bigWig\ color 254,75,173\ longLabel GM12878 BCL3 ENCSR000BNQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNQ Signal\ track wgEncodeReg4TfChip_ENCFF546WTN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF559GZG ENCSR000EIR Peak bigBed 5 GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 DNase peak 4 368 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/f01e18a4-5bfa-4433-a051-9487558e6f06/ENCFF559GZG.bigBed\ color 6,218,147\ labelFields none\ longLabel GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIR Peak\ track wgEncodeReg4Epigenetics_ENCFF559GZG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF179ZBQ ENCSR306IAW - strand bigWig T-cell male adult (42 years) - strand total RNA-seq signal 2 368 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/02e7085c-d1c2-4d8b-b5be-d185f2cef041/ENCFF179ZBQ.bigWig\ color 254,75,173\ longLabel T-cell male adult (42 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR306IAW - strand\ track wgEncodeReg4RnaSeq_ENCFF179ZBQ\ type bigWig\ visibility full\ encTfChipPkENCFF054HJA HepG2 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in HepG2 from ENCODE 3 (ENCFF054HJA) 0 368 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in HepG2 from ENCODE 3 (ENCFF054HJA)\ parent encTfChipPk off\ shortLabel HepG2 GABPA\ subGroups cellType=HepG2 factor=GABPA\ track encTfChipPkENCFF054HJA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_rev Tc:ARPE-19Emt_16hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse 0 368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_rev Tc:ARPE-19Emt_16hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse 1 368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep2.CNhs14533.13677-147E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep2_CNhs14533_13677-147E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13677-147E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep2_CNhs14533_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13677-147E5\ urlLabel FANTOM5 Details:\ ENCFF013AMD ENCFF013AMD bigWig Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (2) DNase, ENCFF013AMD 2 369 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF013AMD.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (2) DNase, ENCFF013AMD\ maxHeightPixels 30\ parent DNase_view off\ priority 71.1\ shortLabel ENCFF013AMD\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__88_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO070VNS dataType=typeDNase\ track ENCFF013AMD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF939VKA ENCSR000BNR Peak bigBed 5 H1 HDAC2 peaks 4 369 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/5d31ee5a-5912-4547-9884-0fdb5202153f/ENCFF939VKA.bigBed\ labelFields none\ longLabel H1 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF939VKA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF591TDF ENCSR000EIR Signal bigWig GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 DNase signal 2 369 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/aa772069-ff6a-4463-a97b-d6656c71237b/ENCFF591TDF.bigWig\ color 6,218,147\ longLabel GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIR Signal\ track wgEncodeReg4Epigenetics_ENCFF591TDF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF935QBK ENCSR307PZR + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 369 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/37518425-8e1c-47ee-aa31-e7c33945e9aa/ENCFF935QBK.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR307PZR + strand\ track wgEncodeReg4RnaSeq_ENCFF935QBK\ type bigWig\ visibility full\ encTfChipPkENCFF097OXR HepG2 GATA4 narrowPeak Transcription Factor ChIP-seq Peaks of GATA4 in HepG2 from ENCODE 3 (ENCFF097OXR) 0 369 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of GATA4 in HepG2 from ENCODE 3 (ENCFF097OXR)\ parent encTfChipPk off\ shortLabel HepG2 GATA4\ subGroups cellType=HepG2 factor=GATA4\ track encTfChipPkENCFF097OXR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_fwd Tc:ARPE-19Emt_16hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward 0 369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_fwd Tc:ARPE-19Emt_16hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward 1 369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ENCFF987RXP ENCFF987RXP bigWig Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (2) DNase, ENCFF987RXP 2 370 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF987RXP.bw\ color 6,218,147\ longLabel Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (2) DNase, ENCFF987RXP\ maxHeightPixels 30\ parent DNase_view off\ priority 77.1\ shortLabel ENCFF987RXP\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__81_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO077CCP dataType=typeDNase\ track ENCFF987RXP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF497ZMJ ENCSR000BNR Signal bigWig H1 HDAC2 ENCSR000BNR signal 2 370 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/8406f3ae-bf73-4425-a436-e7f12d699663/ENCFF497ZMJ.bigWig\ color 118,158,101\ longLabel H1 HDAC2 ENCSR000BNR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNR Signal\ track wgEncodeReg4TfChip_ENCFF497ZMJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF457NVO ENCSR000EIS Peak bigBed 5 GM03348 DNase peak 4 370 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/e93df1dd-d6ed-4dae-9b0b-cd40bf7a2ba2/ENCFF457NVO.bigBed\ color 6,218,147\ labelFields none\ longLabel GM03348 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIS Peak\ track wgEncodeReg4Epigenetics_ENCFF457NVO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF160YNN ENCSR307PZR - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 370 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/4be6e84e-a002-4ef9-b2dc-acb28f47dd94/ENCFF160YNN.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR307PZR - strand\ track wgEncodeReg4RnaSeq_ENCFF160YNN\ type bigWig\ visibility full\ encTfChipPkENCFF485SRU HepG2 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in HepG2 from ENCODE 3 (ENCFF485SRU) 0 370 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in HepG2 from ENCODE 3 (ENCFF485SRU)\ parent encTfChipPk off\ shortLabel HepG2 HCFC1\ subGroups cellType=HepG2 factor=HCFC1\ track encTfChipPkENCFF485SRU\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_rev Tc:ARPE-19Emt_16hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse 0 370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_rev Tc:ARPE-19Emt_16hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse 1 370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2016hr00min%2c%20biol_rep3.CNhs14534.13678-147E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 16hr00min, biol_rep3_CNhs14534_13678-147E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13678-147E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_16hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha16hr00minBiolRep3_CNhs14534_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13678-147E6\ urlLabel FANTOM5 Details:\ ENCFF521HEY ENCFF521HEY bigWig Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (2) DNase, ENCFF521HEY 2 371 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF521HEY.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (2) DNase, ENCFF521HEY\ maxHeightPixels 30\ parent DNase_view off\ priority 69.1\ shortLabel ENCFF521HEY\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__85_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO080EZF dataType=typeDNase\ track ENCFF521HEY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF956MUY ENCSR000BNT Peak bigBed 5 HepG2 YY1 peaks 4 371 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/b21bb646-82b8-4479-90a7-34ed7cc18559/ENCFF956MUY.bigBed\ labelFields none\ longLabel HepG2 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF956MUY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF544AIZ ENCSR000EIS Signal bigWig GM03348 DNase signal 2 371 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/0df8ae67-d4ad-4174-be40-a43ea7859ec3/ENCFF544AIZ.bigWig\ color 6,218,147\ longLabel GM03348 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIS Signal\ track wgEncodeReg4Epigenetics_ENCFF544AIZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF597XJZ ENCSR308XAR + strand bigWig Placenta tissue male embryo + strand total RNA-seq signal 2 371 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/f7ffd64f-d5d4-4948-b01a-c819b8591651/ENCFF597XJZ.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR308XAR + strand\ track wgEncodeReg4RnaSeq_ENCFF597XJZ\ type bigWig\ visibility full\ encTfChipPkENCFF069KPS HepG2 HDAC1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in HepG2 from ENCODE 3 (ENCFF069KPS) 0 371 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in HepG2 from ENCODE 3 (ENCFF069KPS)\ parent encTfChipPk off\ shortLabel HepG2 HDAC1\ subGroups cellType=HepG2 factor=HDAC1\ track encTfChipPkENCFF069KPS\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_fwd Tc:ARPE-19Emt_24hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward 0 371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_fwd Tc:ARPE-19Emt_24hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward 1 371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ENCFF541ZVM ENCFF541ZVM bigWig Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (2) DNase, ENCFF541ZVM 2 372 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF541ZVM.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (2) DNase, ENCFF541ZVM\ maxHeightPixels 30\ parent DNase_view off\ priority 68.1\ shortLabel ENCFF541ZVM\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__81_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO097MEH dataType=typeDNase\ track ENCFF541ZVM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF688ZPL ENCSR000BNT Signal bigWig HepG2 YY1 ENCSR000BNT signal 2 372 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/6d760998-7042-4543-8ca1-84d75fb6bcb3/ENCFF688ZPL.bigWig\ color 137,152,82\ longLabel HepG2 YY1 ENCSR000BNT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNT Signal\ track wgEncodeReg4TfChip_ENCFF688ZPL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF488FOI ENCSR000EIT Peak bigBed 5 GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 treated with 3 μg/mL doxycycline for 10 days DNase peak 4 372 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/979cdc59-1978-41ec-818c-a3c081f199db/ENCFF488FOI.bigBed\ color 6,218,147\ labelFields none\ longLabel GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 treated with 3 μg/mL doxycycline for 10 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIT Peak\ track wgEncodeReg4Epigenetics_ENCFF488FOI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF745MAN ENCSR308XAR - strand bigWig Placenta tissue male embryo - strand total RNA-seq signal 2 372 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/81484b6a-1304-4051-a2ff-13c1e554267a/ENCFF745MAN.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR308XAR - strand\ track wgEncodeReg4RnaSeq_ENCFF745MAN\ type bigWig\ visibility full\ encTfChipPkENCFF589GSN HepG2 HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF589GSN) 0 372 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF589GSN)\ parent encTfChipPk off\ shortLabel HepG2 HDAC2 1\ subGroups cellType=HepG2 factor=HDAC2\ track encTfChipPkENCFF589GSN\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_rev Tc:ARPE-19Emt_24hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse 0 372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_rev Tc:ARPE-19Emt_24hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse 1 372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep1.CNhs14535.13679-147E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep1_CNhs14535_13679-147E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13679-147E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep1_CNhs14535_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13679-147E7\ urlLabel FANTOM5 Details:\ ENCFF753DPM ENCFF753DPM bigWig Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF753DPM 2 373 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF753DPM.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF753DPM\ maxHeightPixels 30\ parent DNase_view off\ priority 105.1\ shortLabel ENCFF753DPM\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO101GPB dataType=typeDNase\ track ENCFF753DPM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF965VXT ENCSR000BNU Peak bigBed 5 K562 ATF3 peaks 4 373 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a723a3b1-1f7a-43d6-b609-addaea2940ba/ENCFF965VXT.bigBed\ labelFields none\ longLabel K562 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF965VXT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF423VAI ENCSR000EIT Signal bigWig GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 treated with 3 μg/mL doxycycline for 10 days DNase signal 2 373 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/11b365cf-2e7f-4c77-9283-6fca170734a1/ENCFF423VAI.bigWig\ color 6,218,147\ longLabel GM03348 genetically modified insertion using transduction targeting H. sapiens MYOD1 treated with 3 μg/mL doxycycline for 10 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIT Signal\ track wgEncodeReg4Epigenetics_ENCFF423VAI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF138GLV ENCSR313COD + strand bigWig Upper lobe of left lung tissue male adult (37 years) + strand total RNA-seq signal 2 373 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/721d2f7a-3c0c-4866-9b48-4ff1eabcb9b1/ENCFF138GLV.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR313COD + strand\ track wgEncodeReg4RnaSeq_ENCFF138GLV\ type bigWig\ visibility full\ encTfChipPkENCFF182XZZ HepG2 HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF182XZZ) 0 373 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in HepG2 from ENCODE 3 (ENCFF182XZZ)\ parent encTfChipPk off\ shortLabel HepG2 HDAC2 2\ subGroups cellType=HepG2 factor=HDAC2\ track encTfChipPkENCFF182XZZ\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_fwd Tc:ARPE-19Emt_24hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward 0 373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_fwd Tc:ARPE-19Emt_24hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward 1 373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ENCFF686OEZ ENCFF686OEZ bigWig Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (2) DNase, ENCFF686OEZ 2 374 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF686OEZ.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (2) DNase, ENCFF686OEZ\ maxHeightPixels 30\ parent DNase_view off\ priority 83.1\ shortLabel ENCFF686OEZ\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__88_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO151OJB dataType=typeDNase\ track ENCFF686OEZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF235PHN ENCSR000BNU Signal bigWig K562 ATF3 ENCSR000BNU signal 2 374 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/98cc1668-9420-4767-a33b-7cbb03e960a0/ENCFF235PHN.bigWig\ color 254,75,173\ longLabel K562 ATF3 ENCSR000BNU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNU Signal\ track wgEncodeReg4TfChip_ENCFF235PHN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF455IBB ENCSR000EIV Peak bigBed 5 AG08395 DNase peak 4 374 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/1d932373-1f3c-4605-b756-aafcffe3e1ec/ENCFF455IBB.bigBed\ color 6,218,147\ labelFields none\ longLabel AG08395 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIV Peak\ track wgEncodeReg4Epigenetics_ENCFF455IBB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF466QPL ENCSR313COD - strand bigWig Upper lobe of left lung tissue male adult (37 years) - strand total RNA-seq signal 2 374 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/a6ad657d-25d4-4145-b0b5-fcc69c3d1184/ENCFF466QPL.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR313COD - strand\ track wgEncodeReg4RnaSeq_ENCFF466QPL\ type bigWig\ visibility full\ encTfChipPkENCFF109EXK HepG2 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in HepG2 from ENCODE 3 (ENCFF109EXK) 0 374 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in HepG2 from ENCODE 3 (ENCFF109EXK)\ parent encTfChipPk off\ shortLabel HepG2 HDAC6\ subGroups cellType=HepG2 factor=HDAC6\ track encTfChipPkENCFF109EXK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_rev Tc:ARPE-19Emt_24hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse 0 374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_rev Tc:ARPE-19Emt_24hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse 1 374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep3.CNhs14537.13681-147E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep3_CNhs14537_13681-147E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13681-147E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep3_CNhs14537_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13681-147E9\ urlLabel FANTOM5 Details:\ ENCFF278VYR ENCFF278VYR bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF278VYR 2 375 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF278VYR.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF278VYR\ maxHeightPixels 30\ parent DNase_view off\ priority 89.1\ shortLabel ENCFF278VYR\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO153NUY dataType=typeDNase\ track ENCFF278VYR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF903PRO ENCSR000BNV Peak bigBed 5 K562 MEF2A peaks 4 375 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/0d8f81bc-4fdd-469e-96a7-6b3f9dbf4db3/ENCFF903PRO.bigBed\ labelFields none\ longLabel K562 MEF2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF903PRO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF979FLI ENCSR000EIV Signal bigWig AG08395 DNase signal 2 375 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/a0b3bc54-3d8f-4b9d-b3f9-fd09c9dfb4da/ENCFF979FLI.bigWig\ color 6,218,147\ longLabel AG08395 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIV Signal\ track wgEncodeReg4Epigenetics_ENCFF979FLI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF486HVO ENCSR314LXG + strand bigWig Karpas-422 + strand total RNA-seq signal 2 375 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/4df2ef25-6f9e-439d-a464-e2867d25d1ca/ENCFF486HVO.bigWig\ color 254,75,173\ longLabel Karpas-422 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR314LXG + strand\ track wgEncodeReg4RnaSeq_ENCFF486HVO\ type bigWig\ visibility full\ encTfChipPkENCFF800QTO HepG2 HNF1A narrowPeak Transcription Factor ChIP-seq Peaks of HNF1A in HepG2 from ENCODE 3 (ENCFF800QTO) 0 375 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNF1A in HepG2 from ENCODE 3 (ENCFF800QTO)\ parent encTfChipPk off\ shortLabel HepG2 HNF1A\ subGroups cellType=HepG2 factor=HNF1A\ track encTfChipPkENCFF800QTO\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_fwd Tc:ARPE-19Emt_42hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward 0 375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_fwd Tc:ARPE-19Emt_42hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward 1 375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ENCFF767BTZ ENCFF767BTZ bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (2) DNase, ENCFF767BTZ 2 376 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF767BTZ.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (2) DNase, ENCFF767BTZ\ maxHeightPixels 30\ parent DNase_view off\ priority 76.1\ shortLabel ENCFF767BTZ\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO201EUI dataType=typeDNase\ track ENCFF767BTZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF069EOR ENCSR000BNV Signal bigWig K562 MEF2A ENCSR000BNV signal 2 376 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/2d7df444-7a69-4ae3-922f-0bbbf24b0e0d/ENCFF069EOR.bigWig\ color 254,75,173\ longLabel K562 MEF2A ENCSR000BNV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNV Signal\ track wgEncodeReg4TfChip_ENCFF069EOR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF282IJN ENCSR000EIW Peak bigBed 5 AG08396 DNase peak 4 376 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/c82b8fed-458f-45ee-bc58-45216773e392/ENCFF282IJN.bigBed\ color 6,218,147\ labelFields none\ longLabel AG08396 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIW Peak\ track wgEncodeReg4Epigenetics_ENCFF282IJN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF617KSY ENCSR314LXG - strand bigWig Karpas-422 - strand total RNA-seq signal 2 376 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/bd89b3d7-8e08-4586-9f8b-bb4b5f9c5d7e/ENCFF617KSY.bigWig\ color 254,75,173\ longLabel Karpas-422 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR314LXG - strand\ track wgEncodeReg4RnaSeq_ENCFF617KSY\ type bigWig\ visibility full\ encTfChipPkENCFF072CXB HepG2 HNF4A narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in HepG2 from ENCODE 3 (ENCFF072CXB) 0 376 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNF4A in HepG2 from ENCODE 3 (ENCFF072CXB)\ parent encTfChipPk off\ shortLabel HepG2 HNF4A\ subGroups cellType=HepG2 factor=HNF4A\ track encTfChipPkENCFF072CXB\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_rev Tc:ARPE-19Emt_42hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse 0 376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_rev Tc:ARPE-19Emt_42hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse 1 376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep1.CNhs14538.13682-147F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep1_CNhs14538_13682-147F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13682-147F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep1_CNhs14538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13682-147F1\ urlLabel FANTOM5 Details:\ ENCFF636BNY ENCFF636BNY bigWig Middle frontal area 46, male adult (87 years): (2) DNase, ENCFF636BNY 2 377 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF636BNY.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (87 years): (2) DNase, ENCFF636BNY\ maxHeightPixels 30\ parent DNase_view off\ priority 114.1\ shortLabel ENCFF636BNY\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__87_years_ biosampleType=tissue donor=ENCDO203ASI dataType=typeDNase\ track ENCFF636BNY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF637NIL ENCSR000BNW Peak bigBed 5 K562 SIX5 peaks 4 377 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/82a1ff75-4bad-4387-aaef-2147537dd762/ENCFF637NIL.bigBed\ labelFields none\ longLabel K562 SIX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF637NIL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF111TCY ENCSR000EIW Signal bigWig AG08396 DNase signal 2 377 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/31e1ab8d-b67e-49c7-9412-20126cdeed8b/ENCFF111TCY.bigWig\ color 6,218,147\ longLabel AG08396 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIW Signal\ track wgEncodeReg4Epigenetics_ENCFF111TCY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF536BKN ENCSR317HKT + strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (35 years) + strand total RNA-seq signal 2 377 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/a38110de-11fe-471b-8fd3-248cf7fdd74a/ENCFF536BKN.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (35 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR317HKT + strand\ track wgEncodeReg4RnaSeq_ENCFF536BKN\ type bigWig\ visibility full\ encTfChipPkENCFF086CTA HepG2 HNF4G narrowPeak Transcription Factor ChIP-seq Peaks of HNF4G in HepG2 from ENCODE 3 (ENCFF086CTA) 0 377 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNF4G in HepG2 from ENCODE 3 (ENCFF086CTA)\ parent encTfChipPk off\ shortLabel HepG2 HNF4G\ subGroups cellType=HepG2 factor=HNF4G\ track encTfChipPkENCFF086CTA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_fwd Tc:ARPE-19Emt_42hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward 0 377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_fwd Tc:ARPE-19Emt_42hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward 1 377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ENCFF715WQG ENCFF715WQG bigWig Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF715WQG 2 378 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF715WQG.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF715WQG\ maxHeightPixels 30\ parent DNase_view off\ priority 104.1\ shortLabel ENCFF715WQG\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO218FFZ dataType=typeDNase\ track ENCFF715WQG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF173LQN ENCSR000BNW Signal bigWig K562 SIX5 ENCSR000BNW signal 2 378 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/861dd2b7-d35d-44a9-9c6a-9c62403f3580/ENCFF173LQN.bigWig\ color 254,75,173\ longLabel K562 SIX5 ENCSR000BNW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNW Signal\ track wgEncodeReg4TfChip_ENCFF173LQN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF917XMQ ENCSR000EIX Peak bigBed 5 AG20443 DNase peak 4 378 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/f5227deb-386c-44e3-8e05-226d123f3d75/ENCFF917XMQ.bigBed\ color 6,218,147\ labelFields none\ longLabel AG20443 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIX Peak\ track wgEncodeReg4Epigenetics_ENCFF917XMQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF586HFN ENCSR317HKT - strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (35 years) - strand total RNA-seq signal 2 378 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/a3f82fcb-b895-43ec-a720-694875530de0/ENCFF586HFN.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (35 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR317HKT - strand\ track wgEncodeReg4RnaSeq_ENCFF586HFN\ type bigWig\ visibility full\ encTfChipPkENCFF046NUR HepG2 HNRNPH1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPH1 in HepG2 from ENCODE 3 (ENCFF046NUR) 0 378 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPH1 in HepG2 from ENCODE 3 (ENCFF046NUR)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPH1\ subGroups cellType=HepG2 factor=HNRNPH1\ track encTfChipPkENCFF046NUR\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_rev Tc:ARPE-19Emt_42hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse 0 378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_rev Tc:ARPE-19Emt_42hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse 1 378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep2.CNhs14539.13683-147F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep2_CNhs14539_13683-147F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13683-147F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep2_CNhs14539_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13683-147F2\ urlLabel FANTOM5 Details:\ ENCFF604AYM ENCFF604AYM bigWig Middle frontal area 46, female adult (78 years): (2) DNase, ENCFF604AYM 2 379 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF604AYM.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (78 years): (2) DNase, ENCFF604AYM\ maxHeightPixels 30\ parent DNase_view off\ priority 94.1\ shortLabel ENCFF604AYM\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__78_years_ biosampleType=tissue donor=ENCDO236YSH dataType=typeDNase\ track ENCFF604AYM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF497ZQZ ENCSR000BNX Peak bigBed 5 HCT116 YY1 peaks 4 379 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/9a8622c3-77a3-4491-8264-79849e3b4581/ENCFF497ZQZ.bigBed\ labelFields none\ longLabel HCT116 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF497ZQZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF617JIT ENCSR000EIX Signal bigWig AG20443 DNase signal 2 379 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/d1420427-dce8-49f3-8c9e-2edc723d358e/ENCFF617JIT.bigWig\ color 6,218,147\ longLabel AG20443 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIX Signal\ track wgEncodeReg4Epigenetics_ENCFF617JIT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF443PUM ENCSR318WUN + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 379 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/1308ac3a-e6d9-42e6-9607-26fd485f8710/ENCFF443PUM.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR318WUN + strand\ track wgEncodeReg4RnaSeq_ENCFF443PUM\ type bigWig\ visibility full\ encTfChipPkENCFF828KXG HepG2 HNRNPK narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPK in HepG2 from ENCODE 3 (ENCFF828KXG) 0 379 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPK in HepG2 from ENCODE 3 (ENCFF828KXG)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPK\ subGroups cellType=HepG2 factor=HNRNPK\ track encTfChipPkENCFF828KXG\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_fwd Tc:ARPE-19Emt_42hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward 0 379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_fwd Tc:ARPE-19Emt_42hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward 1 379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ENCFF258AWM ENCFF258AWM bigWig Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF258AWM 2 380 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF258AWM.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (90 or above years): (2) DNase, ENCFF258AWM\ maxHeightPixels 30\ parent DNase_view off\ priority 103.1\ shortLabel ENCFF258AWM\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO250PFZ dataType=typeDNase\ track ENCFF258AWM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF658WIT ENCSR000BNX Signal bigWig HCT116 YY1 ENCSR000BNX signal 2 380 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/962d63c4-24a2-4dc2-a3e8-1ca416286b02/ENCFF658WIT.bigWig\ color 86,86,36\ longLabel HCT116 YY1 ENCSR000BNX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNX Signal\ track wgEncodeReg4TfChip_ENCFF658WIT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF587XYK ENCSR000EIY Peak bigBed 5 Frontal cortex tissue female adult 67 years and female adult 80 years DNase peak 4 380 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/7a932deb-19f6-4ce3-ab45-be17f78c9839/ENCFF587XYK.bigBed\ color 6,218,147\ labelFields none\ longLabel Frontal cortex tissue female adult 67 years and female adult 80 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIY Peak\ track wgEncodeReg4Epigenetics_ENCFF587XYK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF970EWT ENCSR318WUN - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 380 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/8f5be7cb-7b45-4c2a-9dc8-7391eddf8793/ENCFF970EWT.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR318WUN - strand\ track wgEncodeReg4RnaSeq_ENCFF970EWT\ type bigWig\ visibility full\ encTfChipPkENCFF039CUI HepG2 HNRNPL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPL in HepG2 from ENCODE 3 (ENCFF039CUI) 0 380 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPL in HepG2 from ENCODE 3 (ENCFF039CUI)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPL\ subGroups cellType=HepG2 factor=HNRNPL\ track encTfChipPkENCFF039CUI\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_rev Tc:ARPE-19Emt_42hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse 0 380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_rev Tc:ARPE-19Emt_42hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse 1 380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2042hr00min%2c%20biol_rep3.CNhs14540.13684-147F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 42hr00min, biol_rep3_CNhs14540_13684-147F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13684-147F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_42hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha42hr00minBiolRep3_CNhs14540_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13684-147F3\ urlLabel FANTOM5 Details:\ ENCFF427FGG ENCFF427FGG bigWig Middle frontal area 46, female adult (82 years): (2) DNase, ENCFF427FGG 2 381 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF427FGG.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (82 years): (2) DNase, ENCFF427FGG\ maxHeightPixels 30\ parent DNase_view off\ priority 96.1\ shortLabel ENCFF427FGG\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__82_years_ biosampleType=tissue donor=ENCDO290OPS dataType=typeDNase\ track ENCFF427FGG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF847AJN ENCSR000BNY Peak bigBed 5 HCT116 ZBTB33 peaks 4 381 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4eceb201-f793-4fcf-ad01-1e7c7f26ace7/ENCFF847AJN.bigBed\ labelFields none\ longLabel HCT116 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF847AJN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF643OFE ENCSR000EIY Signal bigWig Frontal cortex tissue female adult 67 years and female adult 80 years DNase signal 2 381 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/c5598c16-55cb-416d-b759-79dab7a68c5e/ENCFF643OFE.bigWig\ color 6,218,147\ longLabel Frontal cortex tissue female adult 67 years and female adult 80 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIY Signal\ track wgEncodeReg4Epigenetics_ENCFF643OFE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF666PER ENCSR320AJD + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal 2 381 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/c806a5d4-0c02-4c89-92a3-629ca99727b1/ENCFF666PER.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR320AJD + strand\ track wgEncodeReg4RnaSeq_ENCFF666PER\ type bigWig\ visibility full\ encTfChipPkENCFF890KTX HepG2 HNRNPLL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPLL in HepG2 from ENCODE 3 (ENCFF890KTX) 0 381 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPLL in HepG2 from ENCODE 3 (ENCFF890KTX)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPLL\ subGroups cellType=HepG2 factor=HNRNPLL\ track encTfChipPkENCFF890KTX\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_fwd Tc:ARPE-19Emt_60hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward 0 381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_fwd Tc:ARPE-19Emt_60hr00minBr1+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward 1 381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ENCFF732ABI ENCFF732ABI bigWig Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (2) DNase, ENCFF732ABI 2 382 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF732ABI.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (2) DNase, ENCFF732ABI\ maxHeightPixels 30\ parent DNase_view off\ priority 82.1\ shortLabel ENCFF732ABI\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__87_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO354SJE dataType=typeDNase\ track ENCFF732ABI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF884WBU ENCSR000BNY Signal bigWig HCT116 ZBTB33 ENCSR000BNY signal 2 382 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/dc53a733-892b-40ae-b4f2-5ceb63e034dc/ENCFF884WBU.bigWig\ color 86,86,36\ longLabel HCT116 ZBTB33 ENCSR000BNY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BNY Signal\ track wgEncodeReg4TfChip_ENCFF884WBU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF399LEY ENCSR000EIZ Peak bigBed 5 Germinal center tissue DNase peak 4 382 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/ab77beef-a5bd-4edd-b442-15e4123447b4/ENCFF399LEY.bigBed\ color 6,218,147\ labelFields none\ longLabel Germinal center tissue DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIZ Peak\ track wgEncodeReg4Epigenetics_ENCFF399LEY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF834GZX ENCSR320AJD - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal 2 382 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/4a4e4baa-9122-423c-a1a7-6e501664d2a8/ENCFF834GZX.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR320AJD - strand\ track wgEncodeReg4RnaSeq_ENCFF834GZX\ type bigWig\ visibility full\ encTfChipPkENCFF509YFF HepG2 HNRNPUL1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPUL1 in HepG2 from ENCODE 3 (ENCFF509YFF) 0 382 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPUL1 in HepG2 from ENCODE 3 (ENCFF509YFF)\ parent encTfChipPk off\ shortLabel HepG2 HNRNPUL1\ subGroups cellType=HepG2 factor=HNRNPUL1\ track encTfChipPkENCFF509YFF\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_rev Tc:ARPE-19Emt_60hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse 0 382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_rev Tc:ARPE-19Emt_60hr00minBr1- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse 1 382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep1.CNhs14541.13685-147F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep1_CNhs14541_13685-147F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13685-147F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr1-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep1_CNhs14541_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13685-147F4\ urlLabel FANTOM5 Details:\ ENCFF305XCA ENCFF305XCA bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (2) DNase, ENCFF305XCA 2 383 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF305XCA.bw\ color 6,218,147\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (2) DNase, ENCFF305XCA\ maxHeightPixels 30\ parent DNase_view off\ priority 80.1\ shortLabel ENCFF305XCA\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO359XWR dataType=typeDNase\ track ENCFF305XCA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF122AWR ENCSR000BOT Peak bigBed 5 HepG2 REST peaks 4 383 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/0de53e6d-c634-4b29-9cf3-b29d35f26e31/ENCFF122AWR.bigBed\ labelFields none\ longLabel HepG2 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF122AWR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF435JDA ENCSR000EIZ Signal bigWig Germinal center tissue DNase signal 2 383 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/06cb9b3d-ed1e-4a50-a46e-538c50c33efe/ENCFF435JDA.bigWig\ color 6,218,147\ longLabel Germinal center tissue DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EIZ Signal\ track wgEncodeReg4Epigenetics_ENCFF435JDA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF819GMD ENCSR320BRR + strand bigWig RPMI7951 + strand total RNA-seq signal 2 383 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/9ad61ecc-0914-403c-8199-c87b0f61c098/ENCFF819GMD.bigWig\ color 127,133,209\ longLabel RPMI7951 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR320BRR + strand\ track wgEncodeReg4RnaSeq_ENCFF819GMD\ type bigWig\ visibility full\ encTfChipPkENCFF969BZA HepG2 IKZF1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in HepG2 from ENCODE 3 (ENCFF969BZA) 0 383 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in HepG2 from ENCODE 3 (ENCFF969BZA)\ parent encTfChipPk off\ shortLabel HepG2 IKZF1\ subGroups cellType=HepG2 factor=IKZF1\ track encTfChipPkENCFF969BZA\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_fwd Tc:ARPE-19Emt_60hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward 0 383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_fwd Tc:ARPE-19Emt_60hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward 1 383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ENCFF571QPS ENCFF571QPS bigWig Middle frontal area 46, male adult (82 years): (2) DNase, ENCFF571QPS 2 384 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF571QPS.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (82 years): (2) DNase, ENCFF571QPS\ maxHeightPixels 30\ parent DNase_view off\ priority 109.1\ shortLabel ENCFF571QPS\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__82_years_ biosampleType=tissue donor=ENCDO407UTA dataType=typeDNase\ track ENCFF571QPS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF551FJI ENCSR000BOT Signal bigWig HepG2 REST ENCSR000BOT signal 2 384 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/24eb2bfc-e86f-4370-a6be-113930cd81a9/ENCFF551FJI.bigWig\ color 137,152,82\ longLabel HepG2 REST ENCSR000BOT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOT Signal\ track wgEncodeReg4TfChip_ENCFF551FJI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF700UCP ENCSR000EJA Peak bigBed 5 H54 DNase peak 4 384 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/6939c3df-cad9-400f-ba95-9a58ae17f560/ENCFF700UCP.bigBed\ color 6,218,147\ labelFields none\ longLabel H54 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJA Peak\ track wgEncodeReg4Epigenetics_ENCFF700UCP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF727RDW ENCSR320BRR - strand bigWig RPMI7951 - strand total RNA-seq signal 2 384 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/d17687c4-6d7f-4737-921a-da9f6ec9e3a8/ENCFF727RDW.bigWig\ color 127,133,209\ longLabel RPMI7951 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR320BRR - strand\ track wgEncodeReg4RnaSeq_ENCFF727RDW\ type bigWig\ visibility full\ encTfChipPkENCFF430PEI HepG2 JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF430PEI) 0 384 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF430PEI)\ parent encTfChipPk off\ shortLabel HepG2 JUND 1\ subGroups cellType=HepG2 factor=JUND\ track encTfChipPkENCFF430PEI\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_rev Tc:ARPE-19Emt_60hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse 0 384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_rev Tc:ARPE-19Emt_60hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse 1 384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep2.CNhs14542.13686-147F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep2_CNhs14542_13686-147F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13686-147F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr2-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep2_CNhs14542_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13686-147F5\ urlLabel FANTOM5 Details:\ ENCFF497CVA ENCFF497CVA bigWig Middle frontal area 46, female adult (87 years): (2) DNase, ENCFF497CVA 2 385 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF497CVA.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (87 years): (2) DNase, ENCFF497CVA\ maxHeightPixels 30\ parent DNase_view off\ priority 99.1\ shortLabel ENCFF497CVA\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO423GGP dataType=typeDNase\ track ENCFF497CVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF237ADX ENCSR000BOU Peak bigBed 5 HepG2 SP2 peaks 4 385 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/7843d082-c0ec-42f0-b1a9-126d9b60cf28/ENCFF237ADX.bigBed\ labelFields none\ longLabel HepG2 SP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF237ADX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF336OBG ENCSR000EJA Signal bigWig H54 DNase signal 2 385 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/d2961d98-c6cf-4e85-b135-f8a5e9e4f228/ENCFF336OBG.bigWig\ color 6,218,147\ longLabel H54 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJA Signal\ track wgEncodeReg4Epigenetics_ENCFF336OBG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF649MKX ENCSR320OTJ + strand bigWig Ovary tissue female adult (41 years) + strand total RNA-seq signal 2 385 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/ffc7d676-a05d-4893-b7f8-6a03ea59c0c4/ENCFF649MKX.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR320OTJ + strand\ track wgEncodeReg4RnaSeq_ENCFF649MKX\ type bigWig\ visibility full\ encTfChipPkENCFF539GRW HepG2 JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF539GRW) 0 385 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in HepG2 from ENCODE 3 (ENCFF539GRW)\ parent encTfChipPk off\ shortLabel HepG2 JUND 2\ subGroups cellType=HepG2 factor=JUND\ track encTfChipPkENCFF539GRW\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_fwd Tc:ARPE-19Emt_60hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward 0 385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_fwd Tc:ARPE-19Emt_60hr00minBr3+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward 1 385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3+\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ENCFF463EIN ENCFF463EIN bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (2) DNase, ENCFF463EIN 2 386 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF463EIN.bw\ color 6,218,147\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (2) DNase, ENCFF463EIN\ maxHeightPixels 30\ parent DNase_view off\ priority 79.1\ shortLabel ENCFF463EIN\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO448YMQ dataType=typeDNase\ track ENCFF463EIN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF456EWJ ENCSR000BOU Signal bigWig HepG2 SP2 ENCSR000BOU signal 2 386 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/48c55cba-d244-4ba1-b65f-e3dde46f0a6b/ENCFF456EWJ.bigWig\ color 137,152,82\ longLabel HepG2 SP2 ENCSR000BOU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOU Signal\ track wgEncodeReg4TfChip_ENCFF456EWJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF619DUW ENCSR000EJB Peak bigBed 5 GM10248 DNase peak 4 386 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/72fa6ed4-aacb-4976-8ccf-77d6ed2055ba/ENCFF619DUW.bigBed\ color 6,218,147\ labelFields none\ longLabel GM10248 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJB Peak\ track wgEncodeReg4Epigenetics_ENCFF619DUW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF343BHK ENCSR320OTJ - strand bigWig Ovary tissue female adult (41 years) - strand total RNA-seq signal 2 386 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/cbeb874c-fa5a-4681-9be7-74fc421cd551/ENCFF343BHK.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR320OTJ - strand\ track wgEncodeReg4RnaSeq_ENCFF343BHK\ type bigWig\ visibility full\ encTfChipPkENCFF091BEK HepG2 KAT2B narrowPeak Transcription Factor ChIP-seq Peaks of KAT2B in HepG2 from ENCODE 3 (ENCFF091BEK) 0 386 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of KAT2B in HepG2 from ENCODE 3 (ENCFF091BEK)\ parent encTfChipPk off\ shortLabel HepG2 KAT2B\ subGroups cellType=HepG2 factor=KAT2B\ track encTfChipPkENCFF091BEK\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_rev Tc:ARPE-19Emt_60hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse 0 386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_rev Tc:ARPE-19Emt_60hr00minBr3- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse 1 386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2060hr00min%2c%20biol_rep3.CNhs14543.13687-147F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 60hr00min, biol_rep3_CNhs14543_13687-147F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13687-147F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_60hr00minBr3-\ subGroups sequenceTech=hCAGE category=Epithelial_to_mesenchymal strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha60hr00minBiolRep3_CNhs14543_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13687-147F6\ urlLabel FANTOM5 Details:\ ENCFF813UXN ENCFF813UXN bigWig Middle frontal area 46, female adult (83 years): (2) DNase, ENCFF813UXN 2 387 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF813UXN.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (83 years): (2) DNase, ENCFF813UXN\ maxHeightPixels 30\ parent DNase_view off\ priority 97.1\ shortLabel ENCFF813UXN\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__83_years_ biosampleType=tissue donor=ENCDO448ZXP dataType=typeDNase\ track ENCFF813UXN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF290KAB ENCSR000BOV Peak bigBed 5 Panc1 POLR2AphosphoS5 peaks 4 387 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4fec0f67-4104-490f-9d9e-3e0f720a2b75/ENCFF290KAB.bigBed\ labelFields none\ longLabel Panc1 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF290KAB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF034LUU ENCSR000EJB Signal bigWig GM10248 DNase signal 2 387 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/6b8b62df-700f-41c1-8313-a4ab59c5c383/ENCFF034LUU.bigWig\ color 6,218,147\ longLabel GM10248 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJB Signal\ track wgEncodeReg4Epigenetics_ENCFF034LUU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF596HNR ENCSR321PGV + strand bigWig Lower leg skin tissue male adult (37 years) + strand total RNA-seq signal 2 387 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/07d24c15-e11e-496b-8f38-cd200952ee32/ENCFF596HNR.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR321PGV + strand\ track wgEncodeReg4RnaSeq_ENCFF596HNR\ type bigWig\ visibility full\ encTfChipPkENCFF768FGG HepG2 KDM1A narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in HepG2 from ENCODE 3 (ENCFF768FGG) 0 387 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in HepG2 from ENCODE 3 (ENCFF768FGG)\ parent encTfChipPk off\ shortLabel HepG2 KDM1A\ subGroups cellType=HepG2 factor=KDM1A\ track encTfChipPkENCFF768FGG\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward 0 387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward 1 387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ ENCFF018BZK ENCFF018BZK bigWig Middle frontal area 46, female adult (84 years): (2) DNase, ENCFF018BZK 2 388 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF018BZK.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (84 years): (2) DNase, ENCFF018BZK\ maxHeightPixels 30\ parent DNase_view off\ priority 98.1\ shortLabel ENCFF018BZK\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__84_years_ biosampleType=tissue donor=ENCDO461DJY dataType=typeDNase\ track ENCFF018BZK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF198YPS ENCSR000BOV Signal bigWig Panc1 POLR2AphosphoS5 ENCSR000BOV signal 2 388 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/491e95d4-00c4-4aca-b6f6-8854a9b07655/ENCFF198YPS.bigWig\ color 175,100,41\ longLabel Panc1 POLR2AphosphoS5 ENCSR000BOV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOV Signal\ track wgEncodeReg4TfChip_ENCFF198YPS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF509WJE ENCSR000EJC Peak bigBed 5 GM10266 DNase peak 4 388 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/1b2dda89-1685-401a-8c89-05fc159b9f32/ENCFF509WJE.bigBed\ color 6,218,147\ labelFields none\ longLabel GM10266 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJC Peak\ track wgEncodeReg4Epigenetics_ENCFF509WJE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF648JWZ ENCSR321PGV - strand bigWig Lower leg skin tissue male adult (37 years) - strand total RNA-seq signal 2 388 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/5dfe7a91-d531-489b-aa8a-ec687fb30d19/ENCFF648JWZ.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR321PGV - strand\ track wgEncodeReg4RnaSeq_ENCFF648JWZ\ type bigWig\ visibility full\ encTfChipPkENCFF334HKG HepG2 KDM5A narrowPeak Transcription Factor ChIP-seq Peaks of KDM5A in HepG2 from ENCODE 3 (ENCFF334HKG) 0 388 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of KDM5A in HepG2 from ENCODE 3 (ENCFF334HKG)\ parent encTfChipPk off\ shortLabel HepG2 KDM5A\ subGroups cellType=HepG2 factor=KDM5A\ track encTfChipPkENCFF334HKG\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse 0 388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse 1 388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep1.CNhs13830.13445-144F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep1_CNhs13830_13445-144F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13445-144F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep1_CNhs13830_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13445-144F7\ urlLabel FANTOM5 Details:\ ENCFF632MSC ENCFF632MSC bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF632MSC 2 389 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF632MSC.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF632MSC\ maxHeightPixels 30\ parent DNase_view off\ priority 87.1\ shortLabel ENCFF632MSC\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO471EKG dataType=typeDNase\ track ENCFF632MSC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF898EEQ ENCSR000BOW Peak bigBed 5 Panc1 SIN3A peaks 4 389 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/0dfe5296-7401-4615-ae97-5632a324915b/ENCFF898EEQ.bigBed\ labelFields none\ longLabel Panc1 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF898EEQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF894JCY ENCSR000EJC Signal bigWig GM10266 DNase signal 2 389 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/d13797d1-8614-4a75-be78-82665a6fda84/ENCFF894JCY.bigWig\ color 6,218,147\ longLabel GM10266 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJC Signal\ track wgEncodeReg4Epigenetics_ENCFF894JCY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF119SVC ENCSR323GUF + strand bigWig Right lobe of liver tissue female adult (47 years) + strand total RNA-seq signal 2 389 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/b773f626-2a6b-4e66-a3a1-41ade0abd4cd/ENCFF119SVC.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR323GUF + strand\ track wgEncodeReg4RnaSeq_ENCFF119SVC\ type bigWig\ visibility full\ encTfChipPkENCFF611PIO HepG2 LCORL narrowPeak Transcription Factor ChIP-seq Peaks of LCORL in HepG2 from ENCODE 3 (ENCFF611PIO) 0 389 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of LCORL in HepG2 from ENCODE 3 (ENCFF611PIO)\ parent encTfChipPk off\ shortLabel HepG2 LCORL\ subGroups cellType=HepG2 factor=LCORL\ track encTfChipPkENCFF611PIO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward 0 389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward 1 389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ ENCFF980SJY ENCFF980SJY bigWig Middle frontal area 46, male adult (71 years): (2) DNase, ENCFF980SJY 2 390 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF980SJY.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (71 years): (2) DNase, ENCFF980SJY\ maxHeightPixels 30\ parent DNase_view off\ priority 107.1\ shortLabel ENCFF980SJY\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__71_years_ biosampleType=tissue donor=ENCDO570AKP dataType=typeDNase\ track ENCFF980SJY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF819LXI ENCSR000BOW Signal bigWig Panc1 SIN3A ENCSR000BOW signal 2 390 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/f8ab08b6-b74b-4079-8f35-f6588eaceca9/ENCFF819LXI.bigWig\ color 175,100,41\ longLabel Panc1 SIN3A ENCSR000BOW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOW Signal\ track wgEncodeReg4TfChip_ENCFF819LXI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF345UUR ENCSR000EJE Peak bigBed 5 GM12891 DNase peak 4 390 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/8643b67d-2ddf-4808-b4b7-9367f8f15f38/ENCFF345UUR.bigBed\ color 6,218,147\ labelFields none\ longLabel GM12891 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJE Peak\ track wgEncodeReg4Epigenetics_ENCFF345UUR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF321WIO ENCSR323GUF - strand bigWig Right lobe of liver tissue female adult (47 years) - strand total RNA-seq signal 2 390 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/623273c0-2e82-4112-960a-ab4d7152a6e1/ENCFF321WIO.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR323GUF - strand\ track wgEncodeReg4RnaSeq_ENCFF321WIO\ type bigWig\ visibility full\ encTfChipPkENCFF493TIR HepG2 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in HepG2 from ENCODE 3 (ENCFF493TIR) 0 390 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in HepG2 from ENCODE 3 (ENCFF493TIR)\ parent encTfChipPk off\ shortLabel HepG2 MAFF\ subGroups cellType=HepG2 factor=MAFF\ track encTfChipPkENCFF493TIR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse 0 390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse 1 390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep2.CNhs13843.13449-144G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep2_CNhs13843_13449-144G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13449-144G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep2_CNhs13843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13449-144G2\ urlLabel FANTOM5 Details:\ ENCFF036SMP ENCFF036SMP bigWig Middle frontal area 46, male adult (83 years): (2) DNase, ENCFF036SMP 2 391 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF036SMP.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (83 years): (2) DNase, ENCFF036SMP\ maxHeightPixels 30\ parent DNase_view off\ priority 111.1\ shortLabel ENCFF036SMP\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO592ZWW dataType=typeDNase\ track ENCFF036SMP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF845VHA ENCSR000BOX Peak bigBed 5 PFSK-1 REST peaks 4 391 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/c75d9825-9aa1-480a-8713-f7a45a6fe154/ENCFF845VHA.bigBed\ labelFields none\ longLabel PFSK-1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF845VHA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF933EUW ENCSR000EJE Signal bigWig GM12891 DNase signal 2 391 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/b9dbbd94-c084-4a7a-8925-239740770d82/ENCFF933EUW.bigWig\ color 6,218,147\ longLabel GM12891 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJE Signal\ track wgEncodeReg4Epigenetics_ENCFF933EUW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF940BMO ENCSR323YXV + strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 391 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/5b9257e8-a903-40e6-9949-b14e817654db/ENCFF940BMO.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR323YXV + strand\ track wgEncodeReg4RnaSeq_ENCFF940BMO\ type bigWig\ visibility full\ encTfChipPkENCFF770TZL HepG2 MAFK 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF770TZL) 0 391 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF770TZL)\ parent encTfChipPk off\ shortLabel HepG2 MAFK 1\ subGroups cellType=HepG2 factor=MAFK\ track encTfChipPkENCFF770TZL\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward 0 391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward 1 391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ ENCFF179VUT ENCFF179VUT bigWig Middle frontal area 46, female adult (79 years): (2) DNase, ENCFF179VUT 2 392 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF179VUT.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (79 years): (2) DNase, ENCFF179VUT\ maxHeightPixels 30\ parent DNase_view off\ priority 95.1\ shortLabel ENCFF179VUT\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__79_years_ biosampleType=tissue donor=ENCDO609ZOG dataType=typeDNase\ track ENCFF179VUT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF456XLQ ENCSR000BOX Signal bigWig PFSK-1 REST ENCSR000BOX signal 2 392 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/75a477e2-56da-43ea-98e7-9f8671287dcd/ENCFF456XLQ.bigWig\ color 155,155,18\ longLabel PFSK-1 REST ENCSR000BOX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOX Signal\ track wgEncodeReg4TfChip_ENCFF456XLQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF544PBF ENCSR000EJF Peak bigBed 5 GM12892 DNase peak 4 392 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/7907f6b4-2192-426f-aee9-af1e106c6654/ENCFF544PBF.bigBed\ color 6,218,147\ labelFields none\ longLabel GM12892 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJF Peak\ track wgEncodeReg4Epigenetics_ENCFF544PBF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF640CVB ENCSR323YXV - strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 392 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/3788fac9-3123-474a-a3b3-5ba37673625f/ENCFF640CVB.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR323YXV - strand\ track wgEncodeReg4RnaSeq_ENCFF640CVB\ type bigWig\ visibility full\ encTfChipPkENCFF171OJF HepG2 MAFK 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF171OJF) 0 392 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in HepG2 from ENCODE 3 (ENCFF171OJF)\ parent encTfChipPk off\ shortLabel HepG2 MAFK 2\ subGroups cellType=HepG2 factor=MAFK\ track encTfChipPkENCFF171OJF\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse 0 392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse 1 392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day00%2c%20rep3.CNhs14056.13453-144G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day00, rep3_CNhs14056_13453-144G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13453-144G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day00Rep3_CNhs14056_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13453-144G6\ urlLabel FANTOM5 Details:\ ENCFF284PMB ENCFF284PMB bigWig Middle frontal area 46, male adult (78 years): (2) DNase, ENCFF284PMB 2 393 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF284PMB.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (78 years): (2) DNase, ENCFF284PMB\ maxHeightPixels 30\ parent DNase_view off\ priority 108.1\ shortLabel ENCFF284PMB\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__78_years_ biosampleType=tissue donor=ENCDO623FPG dataType=typeDNase\ track ENCFF284PMB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF218MAY ENCSR000BOY Peak bigBed 5 PFSK-1 SIN3A peaks 4 393 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/5b3deaf5-6a99-4e65-af84-9f9167682852/ENCFF218MAY.bigBed\ labelFields none\ longLabel PFSK-1 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF218MAY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF341HKW ENCSR000EJF Signal bigWig GM12892 DNase signal 2 393 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/a00c87ed-4265-4af7-afe8-f417324de9b8/ENCFF341HKW.bigWig\ color 6,218,147\ longLabel GM12892 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJF Signal\ track wgEncodeReg4Epigenetics_ENCFF341HKW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF643UKE ENCSR330UMQ + strand bigWig Spleen tissue male adult (37 years) + strand total RNA-seq signal 2 393 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/15/fc1c278e-d8a3-4615-a120-c7483833ba78/ENCFF643UKE.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR330UMQ + strand\ track wgEncodeReg4RnaSeq_ENCFF643UKE\ type bigWig\ visibility full\ encTfChipPkENCFF140PUO HepG2 MAX narrowPeak Transcription Factor ChIP-seq Peaks of MAX in HepG2 from ENCODE 3 (ENCFF140PUO) 0 393 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MAX in HepG2 from ENCODE 3 (ENCFF140PUO)\ parent encTfChipPk off\ shortLabel HepG2 MAX\ subGroups cellType=HepG2 factor=MAX\ track encTfChipPkENCFF140PUO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward 0 393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward 1 393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ ENCFF084QJF ENCFF084QJF bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF084QJF 2 394 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF084QJF.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF084QJF\ maxHeightPixels 30\ parent DNase_view off\ priority 85.1\ shortLabel ENCFF084QJF\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO634UMA dataType=typeDNase\ track ENCFF084QJF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF007LGA ENCSR000BOY Signal bigWig PFSK-1 SIN3A ENCSR000BOY signal 2 394 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/a85e675d-7eae-4324-a872-beb7e0ebb09b/ENCFF007LGA.bigWig\ color 155,155,18\ longLabel PFSK-1 SIN3A ENCSR000BOY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOY Signal\ track wgEncodeReg4TfChip_ENCFF007LGA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF827NFL ENCSR000EJG Peak bigBed 5 GM13976 DNase peak 4 394 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/7aacd92b-7bf1-4c02-9e1c-68a57c0a7817/ENCFF827NFL.bigBed\ color 6,218,147\ labelFields none\ longLabel GM13976 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJG Peak\ track wgEncodeReg4Epigenetics_ENCFF827NFL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF587SDL ENCSR330UMQ - strand bigWig Spleen tissue male adult (37 years) - strand total RNA-seq signal 2 394 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/15/3f5f8dfa-eaf7-48a4-94a4-1e83276e6346/ENCFF587SDL.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR330UMQ - strand\ track wgEncodeReg4RnaSeq_ENCFF587SDL\ type bigWig\ visibility full\ encTfChipPkENCFF562FMQ HepG2 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF562FMQ) 0 394 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF562FMQ)\ parent encTfChipPk off\ shortLabel HepG2 MNT 1\ subGroups cellType=HepG2 factor=MNT\ track encTfChipPkENCFF562FMQ\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse 0 394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse 1 394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep1.CNhs13831.13446-144F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep1_CNhs13831_13446-144F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13446-144F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep1_CNhs13831_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13446-144F8\ urlLabel FANTOM5 Details:\ ENCFF686DIT ENCFF686DIT bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (2) DNase, ENCFF686DIT 2 395 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF686DIT.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (2) DNase, ENCFF686DIT\ maxHeightPixels 30\ parent DNase_view off\ priority 75.1\ shortLabel ENCFF686DIT\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO637GUS dataType=typeDNase\ track ENCFF686DIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF635KBN ENCSR000BOZ Peak bigBed 5 SK-N-SH REST peaks 4 395 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/4c35278c-e201-4139-9670-c258f8939e3f/ENCFF635KBN.bigBed\ labelFields none\ longLabel SK-N-SH REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF635KBN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF239XXV ENCSR000EJG Signal bigWig GM13976 DNase signal 2 395 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/49a36122-77df-4538-a7cc-505874ff9eb8/ENCFF239XXV.bigWig\ color 6,218,147\ longLabel GM13976 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJG Signal\ track wgEncodeReg4Epigenetics_ENCFF239XXV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF634DYK ENCSR332DBS + strand bigWig LHCN-M2 + strand total RNA-seq signal 2 395 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/619df532-3d8b-49db-b421-aba666f949d2/ENCFF634DYK.bigWig\ color 137,135,170\ longLabel LHCN-M2 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR332DBS + strand\ track wgEncodeReg4RnaSeq_ENCFF634DYK\ type bigWig\ visibility full\ encTfChipPkENCFF482JSR HepG2 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF482JSR) 0 395 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in HepG2 from ENCODE 3 (ENCFF482JSR)\ parent encTfChipPk off\ shortLabel HepG2 MNT 2\ subGroups cellType=HepG2 factor=MNT\ track encTfChipPkENCFF482JSR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward 0 395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward 1 395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ ENCFF874WYJ ENCFF874WYJ bigWig Middle frontal area 46, female adult (87 years): (2) DNase, ENCFF874WYJ 2 396 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF874WYJ.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (87 years): (2) DNase, ENCFF874WYJ\ maxHeightPixels 30\ parent DNase_view off\ priority 100.1\ shortLabel ENCFF874WYJ\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO640RUC dataType=typeDNase\ track ENCFF874WYJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF656JKF ENCSR000BOZ Signal bigWig SK-N-SH REST ENCSR000BOZ signal 2 396 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/db870ce7-be68-410d-9da6-c473c7374764/ENCFF656JKF.bigWig\ color 155,155,18\ longLabel SK-N-SH REST ENCSR000BOZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BOZ Signal\ track wgEncodeReg4TfChip_ENCFF656JKF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF517TOE ENCSR000EJH Peak bigBed 5 GM13977 DNase peak 4 396 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/8f0ee420-0266-4fea-b187-887facc14395/ENCFF517TOE.bigBed\ color 6,218,147\ labelFields none\ longLabel GM13977 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJH Peak\ track wgEncodeReg4Epigenetics_ENCFF517TOE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF461XZA ENCSR332DBS - strand bigWig LHCN-M2 - strand total RNA-seq signal 2 396 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/73a33644-bcfc-4c26-9b13-f0ac3ac984cf/ENCFF461XZA.bigWig\ color 137,135,170\ longLabel LHCN-M2 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR332DBS - strand\ track wgEncodeReg4RnaSeq_ENCFF461XZA\ type bigWig\ visibility full\ encTfChipPkENCFF516UWH HepG2 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in HepG2 from ENCODE 3 (ENCFF516UWH) 0 396 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NBN in HepG2 from ENCODE 3 (ENCFF516UWH)\ parent encTfChipPk off\ shortLabel HepG2 NBN\ subGroups cellType=HepG2 factor=NBN\ track encTfChipPkENCFF516UWH\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse 0 396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse 1 396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep2.CNhs13844.13450-144G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep2_CNhs13844_13450-144G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13450-144G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep2_CNhs13844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13450-144G3\ urlLabel FANTOM5 Details:\ ENCFF592RWK ENCFF592RWK bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF592RWK 2 397 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF592RWK.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF592RWK\ maxHeightPixels 30\ parent DNase_view off\ priority 91.1\ shortLabel ENCFF592RWK\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO660TGP dataType=typeDNase\ track ENCFF592RWK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF683PFH ENCSR000BPA Peak bigBed 5 SK-N-SH POLR2AphosphoS5 peaks 4 397 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/b79379ee-38a9-46b4-9aff-91a7ec3cfe35/ENCFF683PFH.bigBed\ labelFields none\ longLabel SK-N-SH POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF683PFH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF947FNR ENCSR000EJH Signal bigWig GM13977 DNase signal 2 397 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/e2678510-5dc4-4d16-a843-2d1e6066526f/ENCFF947FNR.bigWig\ color 6,218,147\ longLabel GM13977 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJH Signal\ track wgEncodeReg4Epigenetics_ENCFF947FNR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF896UEY ENCSR336VTK + strand bigWig T-cell female adult (33 years) + strand total RNA-seq signal 2 397 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/58a51677-2304-4d48-b904-bec0eb0c562c/ENCFF896UEY.bigWig\ color 254,75,173\ longLabel T-cell female adult (33 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR336VTK + strand\ track wgEncodeReg4RnaSeq_ENCFF896UEY\ type bigWig\ visibility full\ encTfChipPkENCFF616RSZ HepG2 NCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in HepG2 from ENCODE 3 (ENCFF616RSZ) 0 397 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in HepG2 from ENCODE 3 (ENCFF616RSZ)\ parent encTfChipPk off\ shortLabel HepG2 NCOR1\ subGroups cellType=HepG2 factor=NCOR1\ track encTfChipPkENCFF616RSZ\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward 0 397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward 1 397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ ENCFF769AFQ ENCFF769AFQ bigWig Middle frontal area 46, male adult (86 years): (2) DNase, ENCFF769AFQ 2 398 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF769AFQ.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (86 years): (2) DNase, ENCFF769AFQ\ maxHeightPixels 30\ parent DNase_view off\ priority 113.1\ shortLabel ENCFF769AFQ\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__86_years_ biosampleType=tissue donor=ENCDO666UNK dataType=typeDNase\ track ENCFF769AFQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF328ZFV ENCSR000BPA Signal bigWig SK-N-SH POLR2AphosphoS5 ENCSR000BPA signal 2 398 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/53a0d6e2-626b-4cbc-8197-b9aead638515/ENCFF328ZFV.bigWig\ color 155,155,18\ longLabel SK-N-SH POLR2AphosphoS5 ENCSR000BPA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPA Signal\ track wgEncodeReg4TfChip_ENCFF328ZFV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF238KGC ENCSR000EJI Peak bigBed 5 GM18507 DNase peak 4 398 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/dca68df8-cf72-4f59-9ea5-c193ca6a5449/ENCFF238KGC.bigBed\ color 6,218,147\ labelFields none\ longLabel GM18507 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJI Peak\ track wgEncodeReg4Epigenetics_ENCFF238KGC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF762DKI ENCSR336VTK - strand bigWig T-cell female adult (33 years) - strand total RNA-seq signal 2 398 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/95498732-0ffd-499d-bca5-5c9348f5e8da/ENCFF762DKI.bigWig\ color 254,75,173\ longLabel T-cell female adult (33 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR336VTK - strand\ track wgEncodeReg4RnaSeq_ENCFF762DKI\ type bigWig\ visibility full\ encTfChipPkENCFF882YLO HepG2 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in HepG2 from ENCODE 3 (ENCFF882YLO) 0 398 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in HepG2 from ENCODE 3 (ENCFF882YLO)\ parent encTfChipPk off\ shortLabel HepG2 NFE2L2\ subGroups cellType=HepG2 factor=NFE2L2\ track encTfChipPkENCFF882YLO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse 0 398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse 1 398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day06%2c%20rep3.CNhs14057.13454-144G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day06, rep3_CNhs14057_13454-144G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13454-144G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day06Rep3_CNhs14057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13454-144G7\ urlLabel FANTOM5 Details:\ ENCFF052CPA ENCFF052CPA bigWig Middle frontal area 46, female adult (88 years): (2) DNase, ENCFF052CPA 2 399 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF052CPA.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (88 years): (2) DNase, ENCFF052CPA\ maxHeightPixels 30\ parent DNase_view off\ priority 101.1\ shortLabel ENCFF052CPA\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__88_years_ biosampleType=tissue donor=ENCDO669IVL dataType=typeDNase\ track ENCFF052CPA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF931NFD ENCSR000BPB Peak bigBed 5 SK-N-SH SIN3A peaks 4 399 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/d14e586a-ac6b-48c9-8628-47faa73b505a/ENCFF931NFD.bigBed\ labelFields none\ longLabel SK-N-SH SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF931NFD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF103RZR ENCSR000EJI Signal bigWig GM18507 DNase signal 2 399 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/9eab12b5-5605-4e35-a2ca-8854581c123f/ENCFF103RZR.bigWig\ color 6,218,147\ longLabel GM18507 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJI Signal\ track wgEncodeReg4Epigenetics_ENCFF103RZR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF584SUQ ENCSR339GOD + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 399 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/4c75031e-89bd-48f2-bd24-9a6a3b44b796/ENCFF584SUQ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR339GOD + strand\ track wgEncodeReg4RnaSeq_ENCFF584SUQ\ type bigWig\ visibility full\ encTfChipPkENCFF162TPR HepG2 NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in HepG2 from ENCODE 3 (ENCFF162TPR) 0 399 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in HepG2 from ENCODE 3 (ENCFF162TPR)\ parent encTfChipPk off\ shortLabel HepG2 NFRKB\ subGroups cellType=HepG2 factor=NFRKB\ track encTfChipPkENCFF162TPR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward 0 399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward 1 399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ ENCFF456EHL ENCFF456EHL bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF456EHL 2 400 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF456EHL.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF456EHL\ maxHeightPixels 30\ parent DNase_view off\ priority 90.1\ shortLabel ENCFF456EHL\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO672KST dataType=typeDNase\ track ENCFF456EHL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF565JCC ENCSR000BPB Signal bigWig SK-N-SH SIN3A ENCSR000BPB signal 2 400 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/c4ab7341-cf7b-455a-a51c-d3a6b392b5fc/ENCFF565JCC.bigWig\ color 155,155,18\ longLabel SK-N-SH SIN3A ENCSR000BPB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPB Signal\ track wgEncodeReg4TfChip_ENCFF565JCC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF572FZH ENCSR000EJJ Peak bigBed 5 GM19238 DNase peak 4 400 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/97139f18-fd0b-412e-a06d-3f1dc5330fb5/ENCFF572FZH.bigBed\ color 6,218,147\ labelFields none\ longLabel GM19238 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJJ Peak\ track wgEncodeReg4Epigenetics_ENCFF572FZH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF377QZF ENCSR339GOD - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 400 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/ac4253b9-0f7b-4a6e-bbc3-0eb6c3a6bd01/ENCFF377QZF.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR339GOD - strand\ track wgEncodeReg4RnaSeq_ENCFF377QZF\ type bigWig\ visibility full\ encTfChipPkENCFF350CKI HepG2 NR2F6 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F6 in HepG2 from ENCODE 3 (ENCFF350CKI) 0 400 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NR2F6 in HepG2 from ENCODE 3 (ENCFF350CKI)\ parent encTfChipPk off\ shortLabel HepG2 NR2F6\ subGroups cellType=HepG2 factor=NR2F6\ track encTfChipPkENCFF350CKI\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse 0 400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse 1 400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep1.CNhs13832.13447-144F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep1_CNhs13832_13447-144F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13447-144F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep1_CNhs13832_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13447-144F9\ urlLabel FANTOM5 Details:\ ENCFF986YEI ENCFF986YEI bigWig Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (2) DNase, ENCFF986YEI 2 401 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF986YEI.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (2) DNase, ENCFF986YEI\ maxHeightPixels 30\ parent DNase_view on\ priority 92.1\ shortLabel ENCFF986YEI\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__89_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO697SWU dataType=typeDNase\ track ENCFF986YEI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF576NIT ENCSR000BPC Peak bigBed 5 PFSK-1 POLR2AphosphoS5 peaks 4 401 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/ad7516b6-1a89-496e-856a-fc54fe03cb4c/ENCFF576NIT.bigBed\ labelFields none\ longLabel PFSK-1 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF576NIT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF985KOZ ENCSR000EJJ Signal bigWig GM19238 DNase signal 2 401 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/b1250435-2ed0-45ec-9f45-f963b7703130/ENCFF985KOZ.bigWig\ color 6,218,147\ longLabel GM19238 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJJ Signal\ track wgEncodeReg4Epigenetics_ENCFF985KOZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF629NUI ENCSR339NMQ + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal 2 401 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/c894a352-e2b7-4e91-9d64-d6fc4a984c3e/ENCFF629NUI.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR339NMQ + strand\ track wgEncodeReg4RnaSeq_ENCFF629NUI\ type bigWig\ visibility full\ encTfChipPkENCFF418DKQ HepG2 NRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF418DKQ) 0 401 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF418DKQ)\ parent encTfChipPk off\ shortLabel HepG2 NRF1 1\ subGroups cellType=HepG2 factor=NRF1\ track encTfChipPkENCFF418DKQ\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward 0 401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward 1 401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ ENCFF286BFK ENCFF286BFK bigWig Middle frontal area 46, female adult (89 years): (2) DNase, ENCFF286BFK 2 402 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF286BFK.bw\ color 6,218,147\ longLabel Middle frontal area 46, female adult (89 years): (2) DNase, ENCFF286BFK\ maxHeightPixels 30\ parent DNase_view off\ priority 102.1\ shortLabel ENCFF286BFK\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_female_adult__89_years_ biosampleType=tissue donor=ENCDO707TUE dataType=typeDNase\ track ENCFF286BFK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF329NEY ENCSR000BPC Signal bigWig PFSK-1 POLR2AphosphoS5 ENCSR000BPC signal 2 402 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/48f66fb1-99e0-4bd4-819f-7abffd24ead3/ENCFF329NEY.bigWig\ color 155,155,18\ longLabel PFSK-1 POLR2AphosphoS5 ENCSR000BPC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPC Signal\ track wgEncodeReg4TfChip_ENCFF329NEY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF980QXP ENCSR000EJK Peak bigBed 5 GM19239 DNase peak 4 402 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/6037a62f-5b92-47ba-8d01-6256d6dc4878/ENCFF980QXP.bigBed\ color 6,218,147\ labelFields none\ longLabel GM19239 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJK Peak\ track wgEncodeReg4Epigenetics_ENCFF980QXP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF445JWJ ENCSR339NMQ - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal 2 402 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/0b94426d-50ce-48f6-8db1-e5cfbeae5b68/ENCFF445JWJ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR339NMQ - strand\ track wgEncodeReg4RnaSeq_ENCFF445JWJ\ type bigWig\ visibility full\ encTfChipPkENCFF313RFR HepG2 NRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF313RFR) 0 402 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in HepG2 from ENCODE 3 (ENCFF313RFR)\ parent encTfChipPk off\ shortLabel HepG2 NRF1 2\ subGroups cellType=HepG2 factor=NRF1\ track encTfChipPkENCFF313RFR\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse 0 402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse 1 402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep2.CNhs13845.13451-144G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep2_CNhs13845_13451-144G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13451-144G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep2_CNhs13845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13451-144G4\ urlLabel FANTOM5 Details:\ ENCFF163NDW ENCFF163NDW bigWig Middle frontal area 46, male adult (83 years): (2) DNase, ENCFF163NDW 2 403 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF163NDW.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (83 years): (2) DNase, ENCFF163NDW\ maxHeightPixels 30\ parent DNase_view off\ priority 110.1\ shortLabel ENCFF163NDW\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO736YJH dataType=typeDNase\ track ENCFF163NDW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF736SLT ENCSR000BPI Peak bigBed 5 HepG2 POLR2AphosphoS5 peaks 4 403 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0541fac3-e5e6-4ac7-a777-6deb85491f87/ENCFF736SLT.bigBed\ labelFields none\ longLabel HepG2 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF736SLT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF807IGB ENCSR000EJK Signal bigWig GM19239 DNase signal 2 403 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/a52a65aa-394c-464a-b967-a37df7aa6281/ENCFF807IGB.bigWig\ color 6,218,147\ longLabel GM19239 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJK Signal\ track wgEncodeReg4Epigenetics_ENCFF807IGB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF610ZWK ENCSR341VFG + strand bigWig Activated T-helper 2 cell male adult (35 years) treated with 5 μg/mL Interferon-gamma antibody for 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL 2 403 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/54f2c691-6cf7-4cbe-af65-9b8a34f13e94/ENCFF610ZWK.bigWig\ color 254,75,173\ longLabel Activated T-helper 2 cell male adult (35 years) treated with 5 μg/mL Interferon-gamma antibody for 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4 for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR341VFG + strand\ track wgEncodeReg4RnaSeq_ENCFF610ZWK\ type bigWig\ visibility full\ encTfChipPkENCFF487WAN HepG2 PCBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP1 in HepG2 from ENCODE 3 (ENCFF487WAN) 0 403 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PCBP1 in HepG2 from ENCODE 3 (ENCFF487WAN)\ parent encTfChipPk off\ shortLabel HepG2 PCBP1\ subGroups cellType=HepG2 factor=PCBP1\ track encTfChipPkENCFF487WAN\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward 0 403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward 1 403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ ENCFF359QRX ENCFF359QRX bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF359QRX 2 404 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF359QRX.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF359QRX\ maxHeightPixels 30\ parent DNase_view off\ priority 88.1\ shortLabel ENCFF359QRX\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO739EFE dataType=typeDNase\ track ENCFF359QRX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF801BXZ ENCSR000BPI Signal bigWig HepG2 POLR2AphosphoS5 ENCSR000BPI signal 2 404 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/15257ee8-e9e9-40e2-b93a-e2bccc2a2d3e/ENCFF801BXZ.bigWig\ color 137,152,82\ longLabel HepG2 POLR2AphosphoS5 ENCSR000BPI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPI Signal\ track wgEncodeReg4TfChip_ENCFF801BXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF056UWU ENCSR000EJL Peak bigBed 5 GM19240 DNase peak 4 404 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/ca07d3f6-a547-4052-b97d-7b2bab9993b8/ENCFF056UWU.bigBed\ color 6,218,147\ labelFields none\ longLabel GM19240 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJL Peak\ track wgEncodeReg4Epigenetics_ENCFF056UWU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF928QXY ENCSR341VFG - strand bigWig Activated T-helper 2 cell male adult (35 years) treated with 5 μg/mL Interferon-gamma antibody for 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL 2 404 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/4dd9a9dc-7388-424b-9cf5-eabbc815851b/ENCFF928QXY.bigWig\ color 254,75,173\ longLabel Activated T-helper 2 cell male adult (35 years) treated with 5 μg/mL Interferon-gamma antibody for 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4 for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR341VFG - strand\ track wgEncodeReg4RnaSeq_ENCFF928QXY\ type bigWig\ visibility full\ encTfChipPkENCFF642XRH HepG2 PCBP2 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP2 in HepG2 from ENCODE 3 (ENCFF642XRH) 0 404 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PCBP2 in HepG2 from ENCODE 3 (ENCFF642XRH)\ parent encTfChipPk off\ shortLabel HepG2 PCBP2\ subGroups cellType=HepG2 factor=PCBP2\ track encTfChipPkENCFF642XRH\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse 0 404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse 1 404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day12%2c%20rep3.CNhs14058.13455-144G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day12, rep3_CNhs14058_13455-144G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13455-144G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day12Rep3_CNhs14058_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13455-144G8\ urlLabel FANTOM5 Details:\ ENCFF318DDE ENCFF318DDE bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (2) DNase, ENCFF318DDE 2 405 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF318DDE.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (2) DNase, ENCFF318DDE\ maxHeightPixels 30\ parent DNase_view off\ priority 72.1\ shortLabel ENCFF318DDE\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO830KFO dataType=typeDNase\ track ENCFF318DDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF609SWF ENCSR000BPJ Peak bigBed 5 K562 CTCF peaks 4 405 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/12/19/ac30d72d-2659-45c9-8d82-0662da972d10/ENCFF609SWF.bigBed\ labelFields none\ longLabel K562 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF609SWF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF949XIH ENCSR000EJL Signal bigWig GM19240 DNase signal 2 405 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/b0419367-aa72-40c8-b13d-f9d6b22cf01e/ENCFF949XIH.bigWig\ color 6,218,147\ longLabel GM19240 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJL Signal\ track wgEncodeReg4Epigenetics_ENCFF949XIH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF905ARA ENCSR343XXH + strand bigWig Mucosa of gallbladder tissue female child (16 years) + strand total RNA-seq signal 2 405 103 78 167 179 166 211 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/a2351e41-ab3a-40fe-93a2-292914d67b40/ENCFF905ARA.bigWig\ color 103,78,167\ longLabel Mucosa of gallbladder tissue female child (16 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR343XXH + strand\ track wgEncodeReg4RnaSeq_ENCFF905ARA\ type bigWig\ visibility full\ encTfChipPkENCFF882RPA HepG2 PHB2 narrowPeak Transcription Factor ChIP-seq Peaks of PHB2 in HepG2 from ENCODE 3 (ENCFF882RPA) 0 405 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PHB2 in HepG2 from ENCODE 3 (ENCFF882RPA)\ parent encTfChipPk off\ shortLabel HepG2 PHB2\ subGroups cellType=HepG2 factor=PHB2\ track encTfChipPkENCFF882RPA\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward 0 405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward 1 405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ ENCFF813QPY ENCFF813QPY bigWig Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (2) DNase, ENCFF813QPY 2 406 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF813QPY.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (2) DNase, ENCFF813QPY\ maxHeightPixels 30\ parent DNase_view off\ priority 81.1\ shortLabel ENCFF813QPY\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__83_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO832DBZ dataType=typeDNase\ track ENCFF813QPY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF736UDR ENCSR000BPJ Signal bigWig K562 CTCF ENCSR000BPJ signal 2 406 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/abcbe251-d16a-4fdc-8cbb-3e58f3d182f7/ENCFF736UDR.bigWig\ color 254,75,173\ longLabel K562 CTCF ENCSR000BPJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPJ Signal\ track wgEncodeReg4TfChip_ENCFF736UDR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF365DIG ENCSR000EJM Peak bigBed 5 GM20000 DNase peak 4 406 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/9ece3626-b77f-4f61-b609-3f1ba69d25f2/ENCFF365DIG.bigBed\ color 6,218,147\ labelFields none\ longLabel GM20000 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJM Peak\ track wgEncodeReg4Epigenetics_ENCFF365DIG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF969TXR ENCSR343XXH - strand bigWig Mucosa of gallbladder tissue female child (16 years) - strand total RNA-seq signal 2 406 103 78 167 179 166 211 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/fc1dbe73-91fb-410e-9321-2add09ae5130/ENCFF969TXR.bigWig\ color 103,78,167\ longLabel Mucosa of gallbladder tissue female child (16 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR343XXH - strand\ track wgEncodeReg4RnaSeq_ENCFF969TXR\ type bigWig\ visibility full\ encTfChipPkENCFF202WIO HepG2 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in HepG2 from ENCODE 3 (ENCFF202WIO) 0 406 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in HepG2 from ENCODE 3 (ENCFF202WIO)\ parent encTfChipPk off\ shortLabel HepG2 PHF8\ subGroups cellType=HepG2 factor=PHF8\ track encTfChipPkENCFF202WIO\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse 0 406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse 1 406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep1.CNhs13833.13448-144G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep1_CNhs13833_13448-144G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13448-144G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep1_CNhs13833_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13448-144G1\ urlLabel FANTOM5 Details:\ ENCFF412TKS ENCFF412TKS bigWig Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (2) DNase, ENCFF412TKS 2 407 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF412TKS.bw\ color 6,218,147\ longLabel Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (2) DNase, ENCFF412TKS\ maxHeightPixels 30\ parent DNase_view off\ priority 78.1\ shortLabel ENCFF412TKS\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__86_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO845GYA dataType=typeDNase\ track ENCFF412TKS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF338WSQ ENCSR000BPK Peak bigBed 5 Panc1 REST peaks 4 407 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/719ac5f9-b7f7-44ee-91d4-aa9e569487b1/ENCFF338WSQ.bigBed\ labelFields none\ longLabel Panc1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF338WSQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF506KKF ENCSR000EJM Signal bigWig GM20000 DNase signal 2 407 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/e924ab4b-17c5-4cc9-864a-0596868bd40d/ENCFF506KKF.bigWig\ color 6,218,147\ longLabel GM20000 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJM Signal\ track wgEncodeReg4Epigenetics_ENCFF506KKF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF333KHL ENCSR344MQK + strand bigWig Testis tissue male adult (54 years) + strand total RNA-seq signal 2 407 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/4c7bfbdf-078b-46df-bb4c-f02d47d66ed7/ENCFF333KHL.bigWig\ color 139,140,140\ longLabel Testis tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR344MQK + strand\ track wgEncodeReg4RnaSeq_ENCFF333KHL\ type bigWig\ visibility full\ encTfChipPkENCFF873OHG HepG2 PLRG1 narrowPeak Transcription Factor ChIP-seq Peaks of PLRG1 in HepG2 from ENCODE 3 (ENCFF873OHG) 0 407 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PLRG1 in HepG2 from ENCODE 3 (ENCFF873OHG)\ parent encTfChipPk off\ shortLabel HepG2 PLRG1\ subGroups cellType=HepG2 factor=PLRG1\ track encTfChipPkENCFF873OHG\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward 0 407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward 1 407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ ENCFF675NNX ENCFF675NNX bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (2) DNase, ENCFF675NNX 2 408 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF675NNX.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (2) DNase, ENCFF675NNX\ maxHeightPixels 30\ parent DNase_view off\ priority 74.1\ shortLabel ENCFF675NNX\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO847KYQ dataType=typeDNase\ track ENCFF675NNX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF317XUE ENCSR000BPK Signal bigWig Panc1 REST ENCSR000BPK signal 2 408 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/00685489-6d97-4edc-b1d3-511e382d7309/ENCFF317XUE.bigWig\ color 175,100,41\ longLabel Panc1 REST ENCSR000BPK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPK Signal\ track wgEncodeReg4TfChip_ENCFF317XUE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF843MOS ENCSR000EJQ Peak bigBed 5 Heart tissue male adult 27 years and male adult 35 years DNase peak 4 408 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/7e0dd4ae-731e-4b92-b2f0-7ed742d27e8d/ENCFF843MOS.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue male adult 27 years and male adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJQ Peak\ track wgEncodeReg4Epigenetics_ENCFF843MOS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF339PMH ENCSR344MQK - strand bigWig Testis tissue male adult (54 years) - strand total RNA-seq signal 2 408 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/731ea471-69a8-4eaf-97d5-8c4fc4823162/ENCFF339PMH.bigWig\ color 139,140,140\ longLabel Testis tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR344MQK - strand\ track wgEncodeReg4RnaSeq_ENCFF339PMH\ type bigWig\ visibility full\ encTfChipPkENCFF565SUC HepG2 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in HepG2 from ENCODE 3 (ENCFF565SUC) 0 408 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in HepG2 from ENCODE 3 (ENCFF565SUC)\ parent encTfChipPk off\ shortLabel HepG2 POLR2A\ subGroups cellType=HepG2 factor=POLR2A\ track encTfChipPkENCFF565SUC\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse 0 408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse 1 408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep2.CNhs13846.13452-144G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep2_CNhs13846_13452-144G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13452-144G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep2_CNhs13846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13452-144G5\ urlLabel FANTOM5 Details:\ ENCFF554VOU ENCFF554VOU bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (2) DNase, ENCFF554VOU 2 409 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF554VOU.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (2) DNase, ENCFF554VOU\ maxHeightPixels 30\ parent DNase_view off\ priority 73.1\ shortLabel ENCFF554VOU\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO853VGZ dataType=typeDNase\ track ENCFF554VOU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF088IVG ENCSR000BPL Peak bigBed 5 SK-N-MC POLR2AphosphoS5 peaks 4 409 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/25324156-84dd-4dad-8767-a567ea661fef/ENCFF088IVG.bigBed\ labelFields none\ longLabel SK-N-MC POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF088IVG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF826AJD ENCSR000EJQ Signal bigWig Heart tissue male adult 27 years and male adult 35 years DNase signal 2 409 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/dc37b819-44e6-4821-9679-15d47ffe8af0/ENCFF826AJD.bigWig\ color 6,218,147\ longLabel Heart tissue male adult 27 years and male adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJQ Signal\ track wgEncodeReg4Epigenetics_ENCFF826AJD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF766JPS ENCSR351OTL + strand bigWig Esophagus squamous epithelium tissue female adult (53 years) + strand total RNA-seq signal 2 409 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/0c6b6d57-2858-4ac1-a078-023f05e7e55f/ENCFF766JPS.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR351OTL + strand\ track wgEncodeReg4RnaSeq_ENCFF766JPS\ type bigWig\ visibility full\ encTfChipPkENCFF551IJP HepG2 POLR2G narrowPeak Transcription Factor ChIP-seq Peaks of POLR2G in HepG2 from ENCODE 3 (ENCFF551IJP) 0 409 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2G in HepG2 from ENCODE 3 (ENCFF551IJP)\ parent encTfChipPk off\ shortLabel HepG2 POLR2G\ subGroups cellType=HepG2 factor=POLR2G\ track encTfChipPkENCFF551IJP\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward 0 409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward 1 409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ ENCFF397SMJ ENCFF397SMJ bigWig Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF397SMJ 2 410 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF397SMJ.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF397SMJ\ maxHeightPixels 30\ parent DNase_view off\ priority 93.1\ shortLabel ENCFF397SMJ\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO877NVF dataType=typeDNase\ track ENCFF397SMJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF857WOC ENCSR000BPL Signal bigWig SK-N-MC POLR2AphosphoS5 ENCSR000BPL signal 2 410 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/1645ff0e-91ec-40af-bad1-a4054b2417ed/ENCFF857WOC.bigWig\ color 155,155,18\ longLabel SK-N-MC POLR2AphosphoS5 ENCSR000BPL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BPL Signal\ track wgEncodeReg4TfChip_ENCFF857WOC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF631ZCQ ENCSR000EJR Peak bigBed 5 HEK293T DNase peak 4 410 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/9ce929d7-f448-4747-8404-6e846d6b2467/ENCFF631ZCQ.bigBed\ color 6,218,147\ labelFields none\ longLabel HEK293T DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJR Peak\ track wgEncodeReg4Epigenetics_ENCFF631ZCQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF762BGZ ENCSR351OTL - strand bigWig Esophagus squamous epithelium tissue female adult (53 years) - strand total RNA-seq signal 2 410 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/5c15aa4c-665b-4345-9c79-3f486e875375/ENCFF762BGZ.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR351OTL - strand\ track wgEncodeReg4RnaSeq_ENCFF762BGZ\ type bigWig\ visibility full\ encTfChipPkENCFF908QCS HepG2 PRPF4 narrowPeak Transcription Factor ChIP-seq Peaks of PRPF4 in HepG2 from ENCODE 3 (ENCFF908QCS) 0 410 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PRPF4 in HepG2 from ENCODE 3 (ENCFF908QCS)\ parent encTfChipPk off\ shortLabel HepG2 PRPF4\ subGroups cellType=HepG2 factor=PRPF4\ track encTfChipPkENCFF908QCS\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse 0 410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse 1 410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C11-CCL54%2c%20day18%2c%20rep3.CNhs14059.13456-144G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C11-CCL54, day18, rep3_CNhs14059_13456-144G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13456-144G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_1 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC11CCL54Day18Rep3_CNhs14059_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13456-144G9\ urlLabel FANTOM5 Details:\ ENCFF492WAE ENCFF492WAE bigWig Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (2) DNase, ENCFF492WAE 2 411 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF492WAE.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (2) DNase, ENCFF492WAE\ maxHeightPixels 30\ parent DNase_view off\ priority 67.1\ shortLabel ENCFF492WAE\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__74_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO907CMO dataType=typeDNase\ track ENCFF492WAE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF173BJH ENCSR000BQA Peak bigBed 5 HepG2 ZBTB7A peaks 4 411 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/2a6289c4-dcc7-4523-ab28-c352610d78a8/ENCFF173BJH.bigBed\ labelFields none\ longLabel HepG2 ZBTB7A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF173BJH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF529BOG ENCSR000EJR Signal bigWig HEK293T DNase signal 2 411 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/debaf79a-0dd5-4cba-b3e9-c7ce5e2b199f/ENCFF529BOG.bigWig\ color 6,218,147\ longLabel HEK293T DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJR Signal\ track wgEncodeReg4Epigenetics_ENCFF529BOG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF995AUL ENCSR352JCY + strand bigWig Type B pancreatic cell + strand total RNA-seq signal 2 411 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/1e6be054-0d34-4012-bd75-7c5fe47a8661/ENCFF995AUL.bigWig\ color 175,100,41\ longLabel Type B pancreatic cell + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR352JCY + strand\ track wgEncodeReg4RnaSeq_ENCFF995AUL\ type bigWig\ visibility full\ encTfChipPkENCFF875ZPV HepG2 PTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PTBP1 in HepG2 from ENCODE 3 (ENCFF875ZPV) 0 411 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of PTBP1 in HepG2 from ENCODE 3 (ENCFF875ZPV)\ parent encTfChipPk off\ shortLabel HepG2 PTBP1\ subGroups cellType=HepG2 factor=PTBP1\ track encTfChipPkENCFF875ZPV\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward 0 411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_fwd Tc:iPStoNeuronDs_Day00R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward 1 411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ ENCFF068GXP ENCFF068GXP bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF068GXP 2 412 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF068GXP.bw\ color 6,218,147\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (2) DNase, ENCFF068GXP\ maxHeightPixels 30\ parent DNase_view off\ priority 84.1\ shortLabel ENCFF068GXP\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO915WZE dataType=typeDNase\ track ENCFF068GXP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF404SHW ENCSR000BQA Signal bigWig HepG2 ZBTB7A ENCSR000BQA signal 2 412 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/bef07b54-9d7c-4577-9156-54eb7f604447/ENCFF404SHW.bigWig\ color 137,152,82\ longLabel HepG2 ZBTB7A ENCSR000BQA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQA Signal\ track wgEncodeReg4TfChip_ENCFF404SHW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF834KSD ENCSR000EJS Peak bigBed 5 HeLa-S3 treated with interferon alpha for 4 hours DNase peak 4 412 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/92b5b959-8a5b-428c-ba7d-8f3ab09bfd73/ENCFF834KSD.bigBed\ color 6,218,147\ labelFields none\ longLabel HeLa-S3 treated with interferon alpha for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJS Peak\ track wgEncodeReg4Epigenetics_ENCFF834KSD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF176FYG ENCSR352JCY - strand bigWig Type B pancreatic cell - strand total RNA-seq signal 2 412 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/cbe8f4b4-04ec-4c6a-b9e1-0ac524abcee2/ENCFF176FYG.bigWig\ color 175,100,41\ longLabel Type B pancreatic cell - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR352JCY - strand\ track wgEncodeReg4RnaSeq_ENCFF176FYG\ type bigWig\ visibility full\ encTfChipPkENCFF093XOJ HepG2 RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF093XOJ) 0 412 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF093XOJ)\ parent encTfChipPk off\ shortLabel HepG2 RAD21 1\ subGroups cellType=HepG2 factor=RAD21\ track encTfChipPkENCFF093XOJ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse 0 412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_rev Tc:iPStoNeuronDs_Day00R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse 1 412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep1.CNhs13835.13457-144H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep1_CNhs13835_13457-144H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13457-144H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep1_CNhs13835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13457-144H1\ urlLabel FANTOM5 Details:\ ENCFF793FUR ENCFF793FUR bigWig Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (2) DNase, ENCFF793FUR 2 413 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF793FUR.bw\ color 6,218,147\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (2) DNase, ENCFF793FUR\ maxHeightPixels 30\ parent DNase_view off\ priority 70.1\ shortLabel ENCFF793FUR\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__86_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO997SGX dataType=typeDNase\ track ENCFF793FUR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF467WJF ENCSR000BQB Peak bigBed 5 Endothelial cell of umbilical vein newborn POLR2A peaks 4 413 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/05f00052-3d25-416e-adc4-ec27ea1841b3/ENCFF467WJF.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF467WJF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF400TSB ENCSR000EJS Signal bigWig HeLa-S3 treated with interferon alpha for 4 hours DNase signal 2 413 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/5f2e3d25-773c-49bb-8a41-9f67a3c84e4c/ENCFF400TSB.bigWig\ color 6,218,147\ longLabel HeLa-S3 treated with interferon alpha for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJS Signal\ track wgEncodeReg4Epigenetics_ENCFF400TSB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF187QYU ENCSR354QPN + strand bigWig Esophagus squamous epithelium tissue male adult (37 years) + strand total RNA-seq signal 2 413 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b77c115a-1c71-42b1-ac34-2c0fd7c69a9a/ENCFF187QYU.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR354QPN + strand\ track wgEncodeReg4RnaSeq_ENCFF187QYU\ type bigWig\ visibility full\ encTfChipPkENCFF874VFZ HepG2 RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF874VFZ) 0 413 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in HepG2 from ENCODE 3 (ENCFF874VFZ)\ parent encTfChipPk off\ shortLabel HepG2 RAD21 2\ subGroups cellType=HepG2 factor=RAD21\ track encTfChipPkENCFF874VFZ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward 0 413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_fwd Tc:iPStoNeuronDs_Day00R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward 1 413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ ENCFF477CEG ENCFF477CEG bigWig Middle frontal area 46, male adult (84 years): (2) DNase, ENCFF477CEG 2 414 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF477CEG.bw\ color 6,218,147\ longLabel Middle frontal area 46, male adult (84 years): (2) DNase, ENCFF477CEG\ maxHeightPixels 30\ parent DNase_view off\ priority 112.1\ shortLabel ENCFF477CEG\ subGroups organ=brain view=DNase_view simpleBiosample=middle_frontal_area_46-_male_adult__84_years_ biosampleType=tissue donor=ENCDO999WDR dataType=typeDNase\ track ENCFF477CEG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF438GKH ENCSR000BQB Signal bigWig Endothelial cell of umbilical vein newborn POLR2A ENCSR000BQB signal 2 414 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/71d096fe-15e4-49a9-b723-ebfe0cf275ba/ENCFF438GKH.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn POLR2A ENCSR000BQB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQB Signal\ track wgEncodeReg4TfChip_ENCFF438GKH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF581SHD ENCSR000EJU Peak bigBed 5 Hepatocyte DNase peak 4 414 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/257ea264-d5e0-478b-b45e-317ad8f010a6/ENCFF581SHD.bigBed\ color 6,218,147\ labelFields none\ longLabel Hepatocyte DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJU Peak\ track wgEncodeReg4Epigenetics_ENCFF581SHD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF249NNE ENCSR354QPN - strand bigWig Esophagus squamous epithelium tissue male adult (37 years) - strand total RNA-seq signal 2 414 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6c55cfe9-621c-48a1-ad9a-a03840772b73/ENCFF249NNE.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR354QPN - strand\ track wgEncodeReg4RnaSeq_ENCFF249NNE\ type bigWig\ visibility full\ encTfChipPkENCFF859MBC HepG2 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in HepG2 from ENCODE 3 (ENCFF859MBC) 0 414 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in HepG2 from ENCODE 3 (ENCFF859MBC)\ parent encTfChipPk off\ shortLabel HepG2 RAD51\ subGroups cellType=HepG2 factor=RAD51\ track encTfChipPkENCFF859MBC\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse 0 414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_rev Tc:iPStoNeuronDs_Day00R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse 1 414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep2.CNhs14060.13461-144H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep2_CNhs14060_13461-144H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13461-144H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep2_CNhs14060_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13461-144H5\ urlLabel FANTOM5 Details:\ ENCFF270ENA ENCFF270ENA bigWig MCF-7: (2) DNase, ENCFF270ENA 2 415 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF270ENA.bw\ color 6,218,147\ longLabel MCF-7: (2) DNase, ENCFF270ENA\ maxHeightPixels 30\ parent DNase_view off\ priority 65.1\ shortLabel ENCFF270ENA\ subGroups organ=breast view=DNase_view simpleBiosample=MCF-7 biosampleType=cell_line donor=ENCDO000AAE dataType=typeDNase\ track ENCFF270ENA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF303XUJ ENCSR000BQC Peak bigBed 5 Endothelial cell of umbilical vein newborn POLR2AphosphoS5 peaks 4 415 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/5abd603e-36f0-4d90-9cf8-28ec1dc2f668/ENCFF303XUJ.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF303XUJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF826YPV ENCSR000EJU Signal bigWig Hepatocyte DNase signal 2 415 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/d1c3e119-1f1f-4d54-a397-86bf0639fb2f/ENCFF826YPV.bigWig\ color 6,218,147\ longLabel Hepatocyte DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJU Signal\ track wgEncodeReg4Epigenetics_ENCFF826YPV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF301XEH ENCSR355JZC + strand bigWig MCF-7 + strand total RNA-seq signal 2 415 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/9549e62f-e99a-4db2-a70a-33bdd3397b6d/ENCFF301XEH.bigWig\ color 65,171,173\ longLabel MCF-7 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR355JZC + strand\ track wgEncodeReg4RnaSeq_ENCFF301XEH\ type bigWig\ visibility full\ encTfChipPkENCFF871YRG HepG2 RBFOX2 narrowPeak Transcription Factor ChIP-seq Peaks of RBFOX2 in HepG2 from ENCODE 3 (ENCFF871YRG) 0 415 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RBFOX2 in HepG2 from ENCODE 3 (ENCFF871YRG)\ parent encTfChipPk off\ shortLabel HepG2 RBFOX2\ subGroups cellType=HepG2 factor=RBFOX2\ track encTfChipPkENCFF871YRG\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward 0 415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_fwd Tc:iPStoNeuronDs_Day00R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward 1 415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ ENCFF549MXK ENCFF549MXK bigWig Breast epithelium, female adult (51 years): (2) DNase, ENCFF549MXK 2 416 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF549MXK.bw\ color 6,218,147\ longLabel Breast epithelium, female adult (51 years): (2) DNase, ENCFF549MXK\ maxHeightPixels 30\ parent DNase_view off\ priority 17.1\ shortLabel ENCFF549MXK\ subGroups organ=breast view=DNase_view simpleBiosample=breast_epithelium-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF549MXK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF416BKX ENCSR000BQC Signal bigWig Endothelial cell of umbilical vein newborn POLR2AphosphoS5 ENCSR000BQC signal 2 416 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/912446cf-a0f4-49a4-8832-33db7e9494a5/ENCFF416BKX.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn POLR2AphosphoS5 ENCSR000BQC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQC Signal\ track wgEncodeReg4TfChip_ENCFF416BKX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF045EMU ENCSR000EJX Peak bigBed 5 HPDE6-E6E7 DNase peak 4 416 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/4f63c643-fa81-4cf8-91c3-eb2844ea7c92/ENCFF045EMU.bigBed\ color 6,218,147\ labelFields none\ longLabel HPDE6-E6E7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJX Peak\ track wgEncodeReg4Epigenetics_ENCFF045EMU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF162JXM ENCSR355JZC - strand bigWig MCF-7 - strand total RNA-seq signal 2 416 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/acf7b0f3-45d8-43a1-a965-45cfea39c02f/ENCFF162JXM.bigWig\ color 65,171,173\ longLabel MCF-7 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR355JZC - strand\ track wgEncodeReg4RnaSeq_ENCFF162JXM\ type bigWig\ visibility full\ encTfChipPkENCFF305WYD HepG2 RBM22 narrowPeak Transcription Factor ChIP-seq Peaks of RBM22 in HepG2 from ENCODE 3 (ENCFF305WYD) 0 416 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RBM22 in HepG2 from ENCODE 3 (ENCFF305WYD)\ parent encTfChipPk off\ shortLabel HepG2 RBM22\ subGroups cellType=HepG2 factor=RBM22\ track encTfChipPkENCFF305WYD\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse 0 416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_rev Tc:iPStoNeuronDs_Day00R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse 1 416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day00%2c%20rep3.CNhs14063.13465-144H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day00, rep3_CNhs14063_13465-144H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13465-144H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day00Rep3_CNhs14063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13465-144H9\ urlLabel FANTOM5 Details:\ ENCFF807AUZ ENCFF807AUZ bigWig Chondrocyte, female embryo (5 days): (2) DNase, ENCFF807AUZ 2 417 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF807AUZ.bw\ color 6,218,147\ longLabel Chondrocyte, female embryo (5 days): (2) DNase, ENCFF807AUZ\ maxHeightPixels 30\ parent DNase_view off\ priority 21.1\ shortLabel ENCFF807AUZ\ subGroups organ=connective_tissue view=DNase_view simpleBiosample=chondrocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF807AUZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF630ERV ENCSR000BQF Peak bigBed 5 SK-N-SH TAF1 peaks 4 417 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7b74f877-f3b5-4b61-8e71-a793bd994769/ENCFF630ERV.bigBed\ labelFields none\ longLabel SK-N-SH TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF630ERV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF614ARK ENCSR000EJX Signal bigWig HPDE6-E6E7 DNase signal 2 417 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/a638f9ce-253b-46ba-9f8e-9e39b563a2b5/ENCFF614ARK.bigWig\ color 6,218,147\ longLabel HPDE6-E6E7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EJX Signal\ track wgEncodeReg4Epigenetics_ENCFF614ARK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF253SBE ENCSR357BYU + strand bigWig Left lobe of liver tissue male adult (45 years) + strand total RNA-seq signal 2 417 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/c8be8dfb-35ff-4755-80df-c6430e576ae6/ENCFF253SBE.bigWig\ color 137,152,82\ longLabel Left lobe of liver tissue male adult (45 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR357BYU + strand\ track wgEncodeReg4RnaSeq_ENCFF253SBE\ type bigWig\ visibility full\ encTfChipPkENCFF420ALF HepG2 RBM39 narrowPeak Transcription Factor ChIP-seq Peaks of RBM39 in HepG2 from ENCODE 3 (ENCFF420ALF) 0 417 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RBM39 in HepG2 from ENCODE 3 (ENCFF420ALF)\ parent encTfChipPk off\ shortLabel HepG2 RBM39\ subGroups cellType=HepG2 factor=RBM39\ track encTfChipPkENCFF420ALF\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward 0 417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_fwd Tc:iPStoNeuronDs_Day06R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward 1 417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ ENCFF573NKX ENCFF573NKX bigWig H1: (2) DNase, ENCFF573NKX 2 418 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF573NKX.bw\ color 6,218,147\ longLabel H1: (2) DNase, ENCFF573NKX\ maxHeightPixels 30\ parent DNase_view off\ priority 37.1\ shortLabel ENCFF573NKX\ subGroups organ=embryo view=DNase_view simpleBiosample=H1 biosampleType=cell_line donor=ENCDO000AAW dataType=typeDNase\ track ENCFF573NKX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF691PCR ENCSR000BQF Signal bigWig SK-N-SH TAF1 ENCSR000BQF signal 2 418 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/3ffac605-fbb6-456d-ba17-71c94b90a8a4/ENCFF691PCR.bigWig\ color 155,155,18\ longLabel SK-N-SH TAF1 ENCSR000BQF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQF Signal\ track wgEncodeReg4TfChip_ENCFF691PCR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF989VAP ENCSR000EKC Peak bigBed 5 HTR-8/SVneo DNase peak 4 418 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/3b724392-d3ff-4049-b67e-9275e47f96fc/ENCFF989VAP.bigBed\ color 6,218,147\ labelFields none\ longLabel HTR-8/SVneo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKC Peak\ track wgEncodeReg4Epigenetics_ENCFF989VAP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF065AJK ENCSR357BYU - strand bigWig Left lobe of liver tissue male adult (45 years) - strand total RNA-seq signal 2 418 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/22b64787-e4bd-4e64-b2a0-735320608358/ENCFF065AJK.bigWig\ color 137,152,82\ longLabel Left lobe of liver tissue male adult (45 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR357BYU - strand\ track wgEncodeReg4RnaSeq_ENCFF065AJK\ type bigWig\ visibility full\ encTfChipPkENCFF987VKU HepG2 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in HepG2 from ENCODE 3 (ENCFF987VKU) 0 418 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in HepG2 from ENCODE 3 (ENCFF987VKU)\ parent encTfChipPk off\ shortLabel HepG2 RCOR1\ subGroups cellType=HepG2 factor=RCOR1\ track encTfChipPkENCFF987VKU\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse 0 418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_rev Tc:iPStoNeuronDs_Day06R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse 1 418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep1.CNhs13836.13458-144H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep1_CNhs13836_13458-144H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13458-144H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep1_CNhs13836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13458-144H2\ urlLabel FANTOM5 Details:\ ENCFF903ZCB ENCFF903ZCB bigWig H9: (2) DNase, ENCFF903ZCB 2 419 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF903ZCB.bw\ color 6,218,147\ longLabel H9: (2) DNase, ENCFF903ZCB\ maxHeightPixels 30\ parent DNase_view off\ priority 38.1\ shortLabel ENCFF903ZCB\ subGroups organ=embryo view=DNase_view simpleBiosample=H9 biosampleType=cell_line donor=ENCDO222AAA dataType=typeDNase\ track ENCFF903ZCB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF903ACN ENCSR000BQG Peak bigBed 5 H1 SP2 peaks 4 419 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7d427ff3-f744-4e14-9b89-d732202d0b04/ENCFF903ACN.bigBed\ labelFields none\ longLabel H1 SP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF903ACN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF230UGR ENCSR000EKC Signal bigWig HTR-8/SVneo DNase signal 2 419 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/c0d150d0-b3a2-47c6-ad02-90cb896ad55a/ENCFF230UGR.bigWig\ color 6,218,147\ longLabel HTR-8/SVneo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKC Signal\ track wgEncodeReg4Epigenetics_ENCFF230UGR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF462KTY ENCSR362HMX + strand bigWig Pericardium fibroblast NONE and female embryo (20 weeks) + strand total RNA-seq signal 2 419 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/b547a265-92b2-4f9c-97dd-cfe5d1afed91/ENCFF462KTY.bigWig\ color 138,135,169\ longLabel Pericardium fibroblast NONE and female embryo (20 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR362HMX + strand\ track wgEncodeReg4RnaSeq_ENCFF462KTY\ type bigWig\ visibility full\ encTfChipPkENCFF669XCW HepG2 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF669XCW) 0 419 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF669XCW)\ parent encTfChipPk off\ shortLabel HepG2 REST 1\ subGroups cellType=HepG2 factor=REST\ track encTfChipPkENCFF669XCW\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward 0 419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_fwd Tc:iPStoNeuronDs_Day06R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward 1 419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ ENCFF909KVS ENCFF909KVS bigWig Endodermal cell, female embryo (5 days): (2) DNase, ENCFF909KVS 2 420 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF909KVS.bw\ color 6,218,147\ longLabel Endodermal cell, female embryo (5 days): (2) DNase, ENCFF909KVS\ maxHeightPixels 30\ parent DNase_view off\ priority 25.1\ shortLabel ENCFF909KVS\ subGroups organ=embryo view=DNase_view simpleBiosample=endodermal_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF909KVS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF608ZRI ENCSR000BQG Signal bigWig H1 SP2 ENCSR000BQG signal 2 420 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/98c1fda4-3e80-4edd-b75e-95537bb4242a/ENCFF608ZRI.bigWig\ color 118,158,101\ longLabel H1 SP2 ENCSR000BQG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQG Signal\ track wgEncodeReg4TfChip_ENCFF608ZRI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF729CLK ENCSR000EKD Peak bigBed 5 HuH-7 DNase peak 4 420 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/b0569663-d8b5-494f-8b12-7fb2ce598c2d/ENCFF729CLK.bigBed\ color 6,218,147\ labelFields none\ longLabel HuH-7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKD Peak\ track wgEncodeReg4Epigenetics_ENCFF729CLK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF598UYU ENCSR362HMX - strand bigWig Pericardium fibroblast NONE and female embryo (20 weeks) - strand total RNA-seq signal 2 420 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/4e9fb9b2-f835-479a-a79b-e3caec3694ea/ENCFF598UYU.bigWig\ color 138,135,169\ longLabel Pericardium fibroblast NONE and female embryo (20 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR362HMX - strand\ track wgEncodeReg4RnaSeq_ENCFF598UYU\ type bigWig\ visibility full\ encTfChipPkENCFF986RRJ HepG2 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF986RRJ) 0 420 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in HepG2 from ENCODE 3 (ENCFF986RRJ)\ parent encTfChipPk off\ shortLabel HepG2 REST 2\ subGroups cellType=HepG2 factor=REST\ track encTfChipPkENCFF986RRJ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse 0 420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_rev Tc:iPStoNeuronDs_Day06R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse 1 420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep2.CNhs14061.13462-144H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep2_CNhs14061_13462-144H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13462-144H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep2_CNhs14061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13462-144H6\ urlLabel FANTOM5 Details:\ ENCFF706PFS ENCFF706PFS bigWig Endothelial cell, male adult (53 years): (2) DNase, ENCFF706PFS 2 421 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF706PFS.bw\ color 6,218,147\ longLabel Endothelial cell, male adult (53 years): (2) DNase, ENCFF706PFS\ maxHeightPixels 30\ parent DNase_view off\ priority 26.1\ shortLabel ENCFF706PFS\ subGroups organ=epithelium view=DNase_view simpleBiosample=endothelial_cell-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeDNase\ track ENCFF706PFS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF074JWB ENCSR000BQI Peak bigBed 5 HepG2 CEBPB peaks 4 421 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/960168fe-1665-45cf-8e7f-4c986800bf24/ENCFF074JWB.bigBed\ labelFields none\ longLabel HepG2 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF074JWB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF578WNN ENCSR000EKD Signal bigWig HuH-7 DNase signal 2 421 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/140765e6-2958-493d-806e-e3611925a6f8/ENCFF578WNN.bigWig\ color 6,218,147\ longLabel HuH-7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKD Signal\ track wgEncodeReg4Epigenetics_ENCFF578WNN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF698DVE ENCSR363EVQ + strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 421 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/3090a052-4ae2-404b-af04-e1de918abd46/ENCFF698DVE.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR363EVQ + strand\ track wgEncodeReg4RnaSeq_ENCFF698DVE\ type bigWig\ visibility full\ encTfChipPkENCFF788CJF HepG2 RFX1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in HepG2 from ENCODE 3 (ENCFF788CJF) 0 421 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in HepG2 from ENCODE 3 (ENCFF788CJF)\ parent encTfChipPk off\ shortLabel HepG2 RFX1\ subGroups cellType=HepG2 factor=RFX1\ track encTfChipPkENCFF788CJF\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward 0 421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_fwd Tc:iPStoNeuronDs_Day06R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward 1 421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ ENCFF841VBI ENCFF841VBI bigWig Esophagus squamous epithelium, male adult (37 years): (2) DNase, ENCFF841VBI 2 422 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF841VBI.bw\ color 6,218,147\ longLabel Esophagus squamous epithelium, male adult (37 years): (2) DNase, ENCFF841VBI\ maxHeightPixels 30\ parent DNase_view off\ priority 28.1\ shortLabel ENCFF841VBI\ subGroups organ=esophagus view=DNase_view simpleBiosample=esophagus_squamous_epithelium-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF841VBI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF090ILC ENCSR000BQI Signal bigWig HepG2 CEBPB ENCSR000BQI signal 2 422 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5973ce69-1aba-4acf-87f6-1d099557cb46/ENCFF090ILC.bigWig\ color 137,152,82\ longLabel HepG2 CEBPB ENCSR000BQI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQI Signal\ track wgEncodeReg4TfChip_ENCFF090ILC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF345HIF ENCSR000EKE Peak bigBed 5 HuH-7.5 DNase peak 4 422 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/675ff1c6-3b88-45ae-b3e0-662229770ee3/ENCFF345HIF.bigBed\ color 6,218,147\ labelFields none\ longLabel HuH-7.5 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKE Peak\ track wgEncodeReg4Epigenetics_ENCFF345HIF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF751RDP ENCSR363EVQ - strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 422 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/5eeac118-4d16-46ea-9e57-4a5118083fe5/ENCFF751RDP.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR363EVQ - strand\ track wgEncodeReg4RnaSeq_ENCFF751RDP\ type bigWig\ visibility full\ encTfChipPkENCFF059GWW HepG2 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in HepG2 from ENCODE 3 (ENCFF059GWW) 0 422 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in HepG2 from ENCODE 3 (ENCFF059GWW)\ parent encTfChipPk off\ shortLabel HepG2 RFX5\ subGroups cellType=HepG2 factor=RFX5\ track encTfChipPkENCFF059GWW\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse 0 422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_rev Tc:iPStoNeuronDs_Day06R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse 1 422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day06%2c%20rep3.CNhs14064.13466-144I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day06, rep3_CNhs14064_13466-144I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13466-144I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day06Rep3_CNhs14064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13466-144I1\ urlLabel FANTOM5 Details:\ ENCFF291DQP ENCFF291DQP bigWig WERI-Rb-1: (2) DNase, ENCFF291DQP 2 423 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF291DQP.bw\ color 6,218,147\ longLabel WERI-Rb-1: (2) DNase, ENCFF291DQP\ maxHeightPixels 30\ parent DNase_view off\ priority 170.1\ shortLabel ENCFF291DQP\ subGroups organ=eye view=DNase_view simpleBiosample=WERI-Rb-1 biosampleType=cell_line donor=ENCDO000ADT dataType=typeDNase\ track ENCFF291DQP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF521LQJ ENCSR000BQK Peak bigBed 5 GM12878 ATF2 peaks 4 423 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/42752eb6-ae82-486e-b8e9-ecd23488b556/ENCFF521LQJ.bigBed\ labelFields none\ longLabel GM12878 ATF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF521LQJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF693PZG ENCSR000EKE Signal bigWig HuH-7.5 DNase signal 2 423 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/b739c8f5-07ac-4958-bb39-fd3bbccc46ab/ENCFF693PZG.bigWig\ color 6,218,147\ longLabel HuH-7.5 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKE Signal\ track wgEncodeReg4Epigenetics_ENCFF693PZG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF987VHA ENCSR365ARV + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 423 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/7a47d028-85b3-46cb-855e-d2c63f3420d4/ENCFF987VHA.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR365ARV + strand\ track wgEncodeReg4RnaSeq_ENCFF987VHA\ type bigWig\ visibility full\ encTfChipPkENCFF380SYL HepG2 RNF2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in HepG2 from ENCODE 3 (ENCFF380SYL) 0 423 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in HepG2 from ENCODE 3 (ENCFF380SYL)\ parent encTfChipPk off\ shortLabel HepG2 RNF2\ subGroups cellType=HepG2 factor=RNF2\ track encTfChipPkENCFF380SYL\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward 0 423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_fwd Tc:iPStoNeuronDs_Day12R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward 1 423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ ENCFF447YDA ENCFF447YDA bigWig Mesothelial cell of epicardium, female embryo (5 days): (2) DNase, ENCFF447YDA 2 424 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF447YDA.bw\ color 6,218,147\ longLabel Mesothelial cell of epicardium, female embryo (5 days): (2) DNase, ENCFF447YDA\ maxHeightPixels 30\ parent DNase_view off\ priority 66.1\ shortLabel ENCFF447YDA\ subGroups organ=heart view=DNase_view simpleBiosample=mesothelial_cell_of_epicardium-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF447YDA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF329LQR ENCSR000BQK Signal bigWig GM12878 ATF2 ENCSR000BQK signal 2 424 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/bd297fd7-85e2-4aa7-bd12-d9d8effb07a8/ENCFF329LQR.bigWig\ color 254,75,173\ longLabel GM12878 ATF2 ENCSR000BQK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQK Signal\ track wgEncodeReg4TfChip_ENCFF329LQR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF970CEM ENCSR000EKF Peak bigBed 5 Endothelial cell of umbilical vein newborn DNase peak 4 424 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/429149d0-2dcb-4981-9e2f-139ebf9c26ee/ENCFF970CEM.bigBed\ color 6,218,147\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKF Peak\ track wgEncodeReg4Epigenetics_ENCFF970CEM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF702KPF ENCSR365ARV - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 424 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/c02aea2c-93b0-4b92-bd41-a0231bbe532d/ENCFF702KPF.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR365ARV - strand\ track wgEncodeReg4RnaSeq_ENCFF702KPF\ type bigWig\ visibility full\ encTfChipPkENCFF105TFM HepG2 RXRA narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in HepG2 from ENCODE 3 (ENCFF105TFM) 0 424 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of RXRA in HepG2 from ENCODE 3 (ENCFF105TFM)\ parent encTfChipPk off\ shortLabel HepG2 RXRA\ subGroups cellType=HepG2 factor=RXRA\ track encTfChipPkENCFF105TFM\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse 0 424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_rev Tc:iPStoNeuronDs_Day12R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse 1 424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep1.CNhs13837.13459-144H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep1_CNhs13837_13459-144H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13459-144H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep1_CNhs13837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13459-144H3\ urlLabel FANTOM5 Details:\ ENCFF679FKQ ENCFF679FKQ bigWig Right atrium auricular region, female adult (51 years): (2) DNase, ENCFF679FKQ 2 425 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF679FKQ.bw\ color 6,218,147\ longLabel Right atrium auricular region, female adult (51 years): (2) DNase, ENCFF679FKQ\ maxHeightPixels 30\ parent DNase_view on\ priority 133.1\ shortLabel ENCFF679FKQ\ subGroups organ=heart view=DNase_view simpleBiosample=right_atrium_auricular_region-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF679FKQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF023CAZ ENCSR000BQL Peak bigBed 5 GM12878 NFATC1 peaks 4 425 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/65988f5e-4738-41c4-99d6-bfc4dbb65204/ENCFF023CAZ.bigBed\ labelFields none\ longLabel GM12878 NFATC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF023CAZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF671RMS ENCSR000EKF Signal bigWig Endothelial cell of umbilical vein newborn DNase signal 2 425 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/2967ed55-ebd3-4b08-b2c0-ac858b897f5f/ENCFF671RMS.bigWig\ color 6,218,147\ longLabel Endothelial cell of umbilical vein newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKF Signal\ track wgEncodeReg4Epigenetics_ENCFF671RMS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF759YTG ENCSR366LFQ + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal 2 425 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/3df22aa9-690c-42a6-a9b1-bcf10df1fc0c/ENCFF759YTG.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR366LFQ + strand\ track wgEncodeReg4RnaSeq_ENCFF759YTG\ type bigWig\ visibility full\ encTfChipPkENCFF635YMI HepG2 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in HepG2 from ENCODE 3 (ENCFF635YMI) 0 425 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in HepG2 from ENCODE 3 (ENCFF635YMI)\ parent encTfChipPk on\ shortLabel HepG2 SIN3A\ subGroups cellType=HepG2 factor=SIN3A\ track encTfChipPkENCFF635YMI\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward 0 425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_fwd Tc:iPStoNeuronDs_Day12R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward 1 425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ ENCFF407UXA ENCFF407UXA bigWig Heart right ventricle, male adult (40 years): (2) DNase, ENCFF407UXA 2 426 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF407UXA.bw\ color 6,218,147\ longLabel Heart right ventricle, male adult (40 years): (2) DNase, ENCFF407UXA\ maxHeightPixels 30\ parent DNase_view off\ priority 47.1\ shortLabel ENCFF407UXA\ subGroups organ=heart view=DNase_view simpleBiosample=heart_right_ventricle-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeDNase\ track ENCFF407UXA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF397GIR ENCSR000BQL Signal bigWig GM12878 NFATC1 ENCSR000BQL signal 2 426 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/fa0bf4cb-8147-41fd-aae0-ccdbee930f32/ENCFF397GIR.bigWig\ color 254,75,173\ longLabel GM12878 NFATC1 ENCSR000BQL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQL Signal\ track wgEncodeReg4TfChip_ENCFF397GIR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF325LRG ENCSR000EKI Peak bigBed 5 CWRU1 DNase peak 4 426 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/51796008-9dfd-47c2-8ca9-160922161da5/ENCFF325LRG.bigBed\ color 6,218,147\ labelFields none\ longLabel CWRU1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKI Peak\ track wgEncodeReg4Epigenetics_ENCFF325LRG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF662XKZ ENCSR366LFQ - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal 2 426 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/3e44d09d-0346-4e14-a70e-c52b7d27a473/ENCFF662XKZ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR366LFQ - strand\ track wgEncodeReg4RnaSeq_ENCFF662XKZ\ type bigWig\ visibility full\ encTfChipPkENCFF193DQZ HepG2 SIN3B narrowPeak Transcription Factor ChIP-seq Peaks of SIN3B in HepG2 from ENCODE 3 (ENCFF193DQZ) 0 426 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3B in HepG2 from ENCODE 3 (ENCFF193DQZ)\ parent encTfChipPk off\ shortLabel HepG2 SIN3B\ subGroups cellType=HepG2 factor=SIN3B\ track encTfChipPkENCFF193DQZ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse 0 426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_rev Tc:iPStoNeuronDs_Day12R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse 1 426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep2.CNhs14062.13463-144H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep2_CNhs14062_13463-144H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13463-144H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep2_CNhs14062_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13463-144H7\ urlLabel FANTOM5 Details:\ ENCFF270GCR ENCFF270GCR bigWig Heart right ventricle, female adult (46 years): (2) DNase, ENCFF270GCR 2 427 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF270GCR.bw\ color 6,218,147\ longLabel Heart right ventricle, female adult (46 years): (2) DNase, ENCFF270GCR\ maxHeightPixels 30\ parent DNase_view off\ priority 45.1\ shortLabel ENCFF270GCR\ subGroups organ=heart view=DNase_view simpleBiosample=heart_right_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeDNase\ track ENCFF270GCR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF160JQZ ENCSR000BQM Peak bigBed 5 GM12878 PML peaks 4 427 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/a8f20afe-491f-4409-9c04-7cbcf9a15108/ENCFF160JQZ.bigBed\ labelFields none\ longLabel GM12878 PML peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF160JQZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF084MCZ ENCSR000EKI Signal bigWig CWRU1 DNase signal 2 427 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/6500ef94-6cc0-40e8-ae43-b42b9cf942a7/ENCFF084MCZ.bigWig\ color 6,218,147\ longLabel CWRU1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKI Signal\ track wgEncodeReg4Epigenetics_ENCFF084MCZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF119GRF ENCSR368HRJ + strand bigWig Ovary tissue female adult (61 years) + strand total RNA-seq signal 2 427 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/64121a5b-c16c-426a-b2f7-a3288ff4dae0/ENCFF119GRF.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR368HRJ + strand\ track wgEncodeReg4RnaSeq_ENCFF119GRF\ type bigWig\ visibility full\ encTfChipPkENCFF035ZFO HepG2 SKI narrowPeak Transcription Factor ChIP-seq Peaks of SKI in HepG2 from ENCODE 3 (ENCFF035ZFO) 0 427 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SKI in HepG2 from ENCODE 3 (ENCFF035ZFO)\ parent encTfChipPk off\ shortLabel HepG2 SKI\ subGroups cellType=HepG2 factor=SKI\ track encTfChipPkENCFF035ZFO\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward 0 427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_fwd Tc:iPStoNeuronDs_Day12R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward 1 427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ ENCFF867HAD ENCFF867HAD bigWig Heart left ventricle, female adult (46 years): (2) DNase, ENCFF867HAD 2 428 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF867HAD.bw\ color 6,218,147\ longLabel Heart left ventricle, female adult (46 years): (2) DNase, ENCFF867HAD\ maxHeightPixels 30\ parent DNase_view off\ priority 40.1\ shortLabel ENCFF867HAD\ subGroups organ=heart view=DNase_view simpleBiosample=heart_left_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeDNase\ track ENCFF867HAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF044IIN ENCSR000BQM Signal bigWig GM12878 PML ENCSR000BQM signal 2 428 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/e014bb49-e9b2-4768-ad40-6506412b1b85/ENCFF044IIN.bigWig\ color 254,75,173\ longLabel GM12878 PML ENCSR000BQM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQM Signal\ track wgEncodeReg4TfChip_ENCFF044IIN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF197AFZ ENCSR000EKJ Peak bigBed 5 IPS-NIHi11 originated from AG20443 DNase peak 4 428 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/1bf5cde0-ac6f-4fc6-940a-8bedcd3a5c16/ENCFF197AFZ.bigBed\ color 6,218,147\ labelFields none\ longLabel IPS-NIHi11 originated from AG20443 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKJ Peak\ track wgEncodeReg4Epigenetics_ENCFF197AFZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF202SOV ENCSR368HRJ - strand bigWig Ovary tissue female adult (61 years) - strand total RNA-seq signal 2 428 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/c0f487e0-fbba-4daf-b611-1589b9ab2023/ENCFF202SOV.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR368HRJ - strand\ track wgEncodeReg4RnaSeq_ENCFF202SOV\ type bigWig\ visibility full\ encTfChipPkENCFF150NHK HepG2 SMARCC2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCC2 in HepG2 from ENCODE 3 (ENCFF150NHK) 0 428 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCC2 in HepG2 from ENCODE 3 (ENCFF150NHK)\ parent encTfChipPk off\ shortLabel HepG2 SMARCC2\ subGroups cellType=HepG2 factor=SMARCC2\ track encTfChipPkENCFF150NHK\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse 0 428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_rev Tc:iPStoNeuronDs_Day12R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse 1 428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day12%2c%20rep3.CNhs14065.13467-144I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day12, rep3_CNhs14065_13467-144I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13467-144I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day12Rep3_CNhs14065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13467-144I2\ urlLabel FANTOM5 Details:\ ENCFF315VTA ENCFF315VTA bigWig Heart right ventricle, male adult (69 years): (2) DNase, ENCFF315VTA 2 429 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF315VTA.bw\ color 6,218,147\ longLabel Heart right ventricle, male adult (69 years): (2) DNase, ENCFF315VTA\ maxHeightPixels 30\ parent DNase_view off\ priority 51.1\ shortLabel ENCFF315VTA\ subGroups organ=heart view=DNase_view simpleBiosample=heart_right_ventricle-_male_adult__69_years_ biosampleType=tissue donor=ENCDO477WED dataType=typeDNase\ track ENCFF315VTA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF982LZL ENCSR000BQN Peak bigBed 5 PFSK-1 TAF1 peaks 4 429 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/30ed1f9e-6a9e-4cfb-9b8b-2ac076a24e6d/ENCFF982LZL.bigBed\ labelFields none\ longLabel PFSK-1 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF982LZL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF975WFY ENCSR000EKJ Signal bigWig IPS-NIHi11 originated from AG20443 DNase signal 2 429 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/7c889286-5985-4c7b-8442-7eeab8c5594c/ENCFF975WFY.bigWig\ color 6,218,147\ longLabel IPS-NIHi11 originated from AG20443 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKJ Signal\ track wgEncodeReg4Epigenetics_ENCFF975WFY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF287LRZ ENCSR369RVN + strand bigWig Cardiac ventricle fibroblast NONE and male adult (18 years) + strand total RNA-seq signal 2 429 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/96b3ee2f-d853-47a0-89f9-6752ac77f906/ENCFF287LRZ.bigWig\ color 116,50,165\ longLabel Cardiac ventricle fibroblast NONE and male adult (18 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR369RVN + strand\ track wgEncodeReg4RnaSeq_ENCFF287LRZ\ type bigWig\ visibility full\ encTfChipPkENCFF210HAA HepG2 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in HepG2 from ENCODE 3 (ENCFF210HAA) 0 429 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in HepG2 from ENCODE 3 (ENCFF210HAA)\ parent encTfChipPk off\ shortLabel HepG2 SMARCE1\ subGroups cellType=HepG2 factor=SMARCE1\ track encTfChipPkENCFF210HAA\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward 0 429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_fwd Tc:iPStoNeuronDs_Day18R1+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward 1 429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ ENCFF644JWK ENCFF644JWK bigWig Left ventricle myocardium inferior, male adult (60 years): (2) DNase, ENCFF644JWK 2 430 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF644JWK.bw\ color 6,218,147\ longLabel Left ventricle myocardium inferior, male adult (60 years): (2) DNase, ENCFF644JWK\ maxHeightPixels 30\ parent DNase_view off\ priority 62.1\ shortLabel ENCFF644JWK\ subGroups organ=heart view=DNase_view simpleBiosample=left_ventricle_myocardium_inferior-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeDNase\ track ENCFF644JWK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF564QGX ENCSR000BQN Signal bigWig PFSK-1 TAF1 ENCSR000BQN signal 2 430 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a7611848-13be-4a53-aa1d-3439ad8c0d89/ENCFF564QGX.bigWig\ color 155,155,18\ longLabel PFSK-1 TAF1 ENCSR000BQN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQN Signal\ track wgEncodeReg4TfChip_ENCFF564QGX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF903UGT ENCSR000EKK Peak bigBed 5 IPS-NIHi7 originated from AG08395 DNase peak 4 430 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/df992ded-8af4-4a3c-ae10-9d3387989aab/ENCFF903UGT.bigBed\ color 6,218,147\ labelFields none\ longLabel IPS-NIHi7 originated from AG08395 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKK Peak\ track wgEncodeReg4Epigenetics_ENCFF903UGT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF907CHI ENCSR369RVN - strand bigWig Cardiac ventricle fibroblast NONE and male adult (18 years) - strand total RNA-seq signal 2 430 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/6e1008f9-abd1-4ed3-b3bb-4572447b2cb9/ENCFF907CHI.bigWig\ color 116,50,165\ longLabel Cardiac ventricle fibroblast NONE and male adult (18 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR369RVN - strand\ track wgEncodeReg4RnaSeq_ENCFF907CHI\ type bigWig\ visibility full\ encTfChipPkENCFF035YWE HepG2 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in HepG2 from ENCODE 3 (ENCFF035YWE) 0 430 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in HepG2 from ENCODE 3 (ENCFF035YWE)\ parent encTfChipPk off\ shortLabel HepG2 SMC3\ subGroups cellType=HepG2 factor=SMC3\ track encTfChipPkENCFF035YWE\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse 0 430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_rev Tc:iPStoNeuronDs_Day18R1- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse 1 430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep1.CNhs13838.13460-144H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep1_CNhs13838_13460-144H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13460-144H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep1_CNhs13838_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13460-144H4\ urlLabel FANTOM5 Details:\ ENCFF417JSF ENCFF417JSF bigWig Heart left ventricle, female adult (53 years): (2) DNase, ENCFF417JSF 2 431 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF417JSF.bw\ color 6,218,147\ longLabel Heart left ventricle, female adult (53 years): (2) DNase, ENCFF417JSF\ maxHeightPixels 30\ parent DNase_view off\ priority 41.1\ shortLabel ENCFF417JSF\ subGroups organ=heart view=DNase_view simpleBiosample=heart_left_ventricle-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF417JSF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF943QPB ENCSR000BQS Peak bigBed 5 GM12878 REST peaks 4 431 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/24ac6978-09f9-4f5a-8752-b0e1a683c412/ENCFF943QPB.bigBed\ labelFields none\ longLabel GM12878 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF943QPB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF281YXX ENCSR000EKK Signal bigWig IPS-NIHi7 originated from AG08395 DNase signal 2 431 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/f120b12f-aeff-4b92-be92-328ee7594f7b/ENCFF281YXX.bigWig\ color 6,218,147\ longLabel IPS-NIHi7 originated from AG08395 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKK Signal\ track wgEncodeReg4Epigenetics_ENCFF281YXX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF610DVT ENCSR371VGV + strand bigWig Myometrial cell female adult (34 years) + strand total RNA-seq signal 2 431 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/08be2f15-64b5-4b19-9f99-78ce4084bb9a/ENCFF610DVT.bigWig\ color 186,111,165\ longLabel Myometrial cell female adult (34 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR371VGV + strand\ track wgEncodeReg4RnaSeq_ENCFF610DVT\ type bigWig\ visibility full\ encTfChipPkENCFF858FBZ HepG2 SNRNP70 narrowPeak Transcription Factor ChIP-seq Peaks of SNRNP70 in HepG2 from ENCODE 3 (ENCFF858FBZ) 0 431 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SNRNP70 in HepG2 from ENCODE 3 (ENCFF858FBZ)\ parent encTfChipPk off\ shortLabel HepG2 SNRNP70\ subGroups cellType=HepG2 factor=SNRNP70\ track encTfChipPkENCFF858FBZ\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward 0 431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_fwd Tc:iPStoNeuronDs_Day18R2+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward 1 431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ ENCFF832GZH ENCFF832GZH bigWig Right atrium auricular region, female adult (53 years): (2) DNase, ENCFF832GZH 2 432 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF832GZH.bw\ color 6,218,147\ longLabel Right atrium auricular region, female adult (53 years): (2) DNase, ENCFF832GZH\ maxHeightPixels 30\ parent DNase_view off\ priority 134.1\ shortLabel ENCFF832GZH\ subGroups organ=heart view=DNase_view simpleBiosample=right_atrium_auricular_region-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF832GZH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF845YET ENCSR000BQS Signal bigWig GM12878 REST ENCSR000BQS signal 2 432 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/935f8c7e-2ba0-47ee-aff3-a0292778d69c/ENCFF845YET.bigWig\ color 254,75,173\ longLabel GM12878 REST ENCSR000BQS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQS Signal\ track wgEncodeReg4TfChip_ENCFF845YET\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF305PAK ENCSR000EKL Peak bigBed 5 Ishikawa treated with 100 nM 4-hydroxy-tamoxifen for 30 minutes DNase peak 4 432 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/264509ff-6d1b-44a5-99f8-63ec8091b783/ENCFF305PAK.bigBed\ color 6,218,147\ labelFields none\ longLabel Ishikawa treated with 100 nM 4-hydroxy-tamoxifen for 30 minutes DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKL Peak\ track wgEncodeReg4Epigenetics_ENCFF305PAK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF428RWH ENCSR371VGV - strand bigWig Myometrial cell female adult (34 years) - strand total RNA-seq signal 2 432 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/7f3a289e-4af9-40c6-90c6-e2ff32ab328f/ENCFF428RWH.bigWig\ color 186,111,165\ longLabel Myometrial cell female adult (34 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR371VGV - strand\ track wgEncodeReg4RnaSeq_ENCFF428RWH\ type bigWig\ visibility full\ encTfChipPkENCFF257QND HepG2 SOX13 narrowPeak Transcription Factor ChIP-seq Peaks of SOX13 in HepG2 from ENCODE 3 (ENCFF257QND) 0 432 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SOX13 in HepG2 from ENCODE 3 (ENCFF257QND)\ parent encTfChipPk off\ shortLabel HepG2 SOX13\ subGroups cellType=HepG2 factor=SOX13\ track encTfChipPkENCFF257QND\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse 0 432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_rev Tc:iPStoNeuronDs_Day18R2- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse 1 432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep2.CNhs13922.13464-144H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep2_CNhs13922_13464-144H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13464-144H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep2_CNhs13922_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13464-144H8\ urlLabel FANTOM5 Details:\ ENCFF688CZD ENCFF688CZD bigWig Heart right ventricle, male adult (61 years): (2) DNase, ENCFF688CZD 2 433 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF688CZD.bw\ color 6,218,147\ longLabel Heart right ventricle, male adult (61 years): (2) DNase, ENCFF688CZD\ maxHeightPixels 30\ parent DNase_view off\ priority 49.1\ shortLabel ENCFF688CZD\ subGroups organ=heart view=DNase_view simpleBiosample=heart_right_ventricle-_male_adult__61_years_ biosampleType=tissue donor=ENCDO808ASZ dataType=typeDNase\ track ENCFF688CZD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF658WIO ENCSR000BQT Peak bigBed 5 GM12878 TCF3 peaks 4 433 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d68d6011-30ac-485f-8735-de8b6d0974cd/ENCFF658WIO.bigBed\ labelFields none\ longLabel GM12878 TCF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF658WIO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF251BFP ENCSR000EKL Signal bigWig Ishikawa treated with 100 nM 4-hydroxy-tamoxifen for 30 minutes DNase signal 2 433 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/e40321fc-cbc5-452a-b230-52d79d96f9af/ENCFF251BFP.bigWig\ color 6,218,147\ longLabel Ishikawa treated with 100 nM 4-hydroxy-tamoxifen for 30 minutes DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKL Signal\ track wgEncodeReg4Epigenetics_ENCFF251BFP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF635XGR ENCSR373BDG + strand bigWig Kidney epithelial cell male embryo (22 weeks) and male newborn + strand total RNA-seq signal 2 433 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/cc7f9ede-7fb3-4a38-ab94-d86fbf298a80/ENCFF635XGR.bigWig\ color 92,161,153\ longLabel Kidney epithelial cell male embryo (22 weeks) and male newborn + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR373BDG + strand\ track wgEncodeReg4RnaSeq_ENCFF635XGR\ type bigWig\ visibility full\ encTfChipPkENCFF944LNI HepG2 SOX6 narrowPeak Transcription Factor ChIP-seq Peaks of SOX6 in HepG2 from ENCODE 3 (ENCFF944LNI) 0 433 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SOX6 in HepG2 from ENCODE 3 (ENCFF944LNI)\ parent encTfChipPk off\ shortLabel HepG2 SOX6\ subGroups cellType=HepG2 factor=SOX6\ track encTfChipPkENCFF944LNI\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward 0 433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_fwd Tc:iPStoNeuronDs_Day18R3+ bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward 1 433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=forward\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ ENCFF414ADM ENCFF414ADM bigWig Heart left ventricle, female adult (59 years): (2) DNase, ENCFF414ADM 2 434 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF414ADM.bw\ color 6,218,147\ longLabel Heart left ventricle, female adult (59 years): (2) DNase, ENCFF414ADM\ maxHeightPixels 30\ parent DNase_view off\ priority 43.1\ shortLabel ENCFF414ADM\ subGroups organ=heart view=DNase_view simpleBiosample=heart_left_ventricle-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeDNase\ track ENCFF414ADM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF560MLE ENCSR000BQT Signal bigWig GM12878 TCF3 ENCSR000BQT signal 2 434 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/26ee5cda-4d63-4a18-b464-2fc006dfa5f1/ENCFF560MLE.bigWig\ color 254,75,173\ longLabel GM12878 TCF3 ENCSR000BQT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQT Signal\ track wgEncodeReg4TfChip_ENCFF560MLE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF374SGQ ENCSR000EKN Peak bigBed 5 K562 treated with 1 μM vorinostat for 72 hours DNase peak 4 434 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/a0c3cf73-a78d-4854-81bf-1a2122d3c73e/ENCFF374SGQ.bigBed\ color 6,218,147\ labelFields none\ longLabel K562 treated with 1 μM vorinostat for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKN Peak\ track wgEncodeReg4Epigenetics_ENCFF374SGQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF118WOE ENCSR373BDG - strand bigWig Kidney epithelial cell male embryo (22 weeks) and male newborn - strand total RNA-seq signal 2 434 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/d3a1f1a9-a90d-4c39-ad60-45c84437987f/ENCFF118WOE.bigWig\ color 92,161,153\ longLabel Kidney epithelial cell male embryo (22 weeks) and male newborn - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR373BDG - strand\ track wgEncodeReg4RnaSeq_ENCFF118WOE\ type bigWig\ visibility full\ encTfChipPkENCFF175VXL HepG2 SP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF175VXL) 0 434 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF175VXL)\ parent encTfChipPk on\ shortLabel HepG2 SP1 1\ subGroups cellType=HepG2 factor=SP1\ track encTfChipPkENCFF175VXL\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse 0 434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_rev Tc:iPStoNeuronDs_Day18R3- bigWig iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse 1 434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20down-syndrome%20donor%20C18-CCL54%2c%20day18%2c%20rep3.CNhs14066.13468-144I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, down-syndrome donor C18-CCL54, day18, rep3_CNhs14066_13468-144I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13468-144I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:iPStoNeuronDs_Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_Downs_syndrome_2 strand=reverse\ track IPSDifferentiationToNeuronDownsyndromeDonorC18CCL54Day18Rep3_CNhs14066_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13468-144I3\ urlLabel FANTOM5 Details:\ ENCFF118JST ENCFF118JST bigWig Heart right ventricle, female adult (56 years): (2) DNase, ENCFF118JST 2 435 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF118JST.bw\ color 6,218,147\ longLabel Heart right ventricle, female adult (56 years): (2) DNase, ENCFF118JST\ maxHeightPixels 30\ parent DNase_view off\ priority 46.1\ shortLabel ENCFF118JST\ subGroups organ=heart view=DNase_view simpleBiosample=heart_right_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeDNase\ track ENCFF118JST\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF295GZO ENCSR000BQU Peak bigBed 5 H1 ATF2 peaks 4 435 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/7ac1754a-4498-4397-b5ed-cf413255fda9/ENCFF295GZO.bigBed\ labelFields none\ longLabel H1 ATF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF295GZO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF929ROI ENCSR000EKN Signal bigWig K562 treated with 1 μM vorinostat for 72 hours DNase signal 2 435 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/42d9de6b-1930-47b2-a3ae-e909432a575e/ENCFF929ROI.bigWig\ color 6,218,147\ longLabel K562 treated with 1 μM vorinostat for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKN Signal\ track wgEncodeReg4Epigenetics_ENCFF929ROI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF197PEN ENCSR377FPC + strand bigWig Aorta tissue female adult (59 years) + strand total RNA-seq signal 2 435 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/c4ef721e-e05f-41ad-a80d-33b5928d6f9a/ENCFF197PEN.bigWig\ color 255,37,41\ longLabel Aorta tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR377FPC + strand\ track wgEncodeReg4RnaSeq_ENCFF197PEN\ type bigWig\ visibility full\ encTfChipPkENCFF735WMX HepG2 SP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF735WMX) 0 435 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in HepG2 from ENCODE 3 (ENCFF735WMX)\ parent encTfChipPk off\ shortLabel HepG2 SP1 2\ subGroups cellType=HepG2 factor=SP1\ track encTfChipPkENCFF735WMX\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward 0 435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward 1 435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ ENCFF122VLP ENCFF122VLP bigWig Heart left ventricle, female adult (56 years): (2) DNase, ENCFF122VLP 2 436 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF122VLP.bw\ color 6,218,147\ longLabel Heart left ventricle, female adult (56 years): (2) DNase, ENCFF122VLP\ maxHeightPixels 30\ parent DNase_view off\ priority 42.1\ shortLabel ENCFF122VLP\ subGroups organ=heart view=DNase_view simpleBiosample=heart_left_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeDNase\ track ENCFF122VLP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF031CBV ENCSR000BQU Signal bigWig H1 ATF2 ENCSR000BQU signal 2 436 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/cc7a2a36-4dce-4416-940f-15d61a9332a1/ENCFF031CBV.bigWig\ color 118,158,101\ longLabel H1 ATF2 ENCSR000BQU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQU Signal\ track wgEncodeReg4TfChip_ENCFF031CBV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF058MMD ENCSR000EKO Peak bigBed 5 K562 treated with 0.05% dimethyl sulfoxide for 72 hours DNase peak 4 436 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/7edc2698-92c3-4c3c-a4cd-934a61aecfe0/ENCFF058MMD.bigBed\ color 6,218,147\ labelFields none\ longLabel K562 treated with 0.05% dimethyl sulfoxide for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKO Peak\ track wgEncodeReg4Epigenetics_ENCFF058MMD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF865DOH ENCSR377FPC - strand bigWig Aorta tissue female adult (59 years) - strand total RNA-seq signal 2 436 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/c22d73d4-3b0c-4635-a3ef-6dd8f3203290/ENCFF865DOH.bigWig\ color 255,37,41\ longLabel Aorta tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR377FPC - strand\ track wgEncodeReg4RnaSeq_ENCFF865DOH\ type bigWig\ visibility full\ encTfChipPkENCFF122FVR HepG2 SRSF4 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF4 in HepG2 from ENCODE 3 (ENCFF122FVR) 0 436 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SRSF4 in HepG2 from ENCODE 3 (ENCFF122FVR)\ parent encTfChipPk off\ shortLabel HepG2 SRSF4\ subGroups cellType=HepG2 factor=SRSF4\ track encTfChipPkENCFF122FVR\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse 0 436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse 1 436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep1.CNhs14045.13421-144D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep1_CNhs14045_13421-144D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13421-144D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep1_CNhs14045_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13421-144D1\ urlLabel FANTOM5 Details:\ ENCFF700MXZ ENCFF700MXZ bigWig Heart right ventricle, male adult (66 years): (2) DNase, ENCFF700MXZ 2 437 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF700MXZ.bw\ color 6,218,147\ longLabel Heart right ventricle, male adult (66 years): (2) DNase, ENCFF700MXZ\ maxHeightPixels 30\ parent DNase_view off\ priority 50.1\ shortLabel ENCFF700MXZ\ subGroups organ=heart view=DNase_view simpleBiosample=heart_right_ventricle-_male_adult__66_years_ biosampleType=tissue donor=ENCDO926KEV dataType=typeDNase\ track ENCFF700MXZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF473YOB ENCSR000BQV Peak bigBed 5 H1 SP4 peaks 4 437 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/752bb485-55e9-45da-800e-22ca0cc826f0/ENCFF473YOB.bigBed\ labelFields none\ longLabel H1 SP4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF473YOB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF132BMD ENCSR000EKO Signal bigWig K562 treated with 0.05% dimethyl sulfoxide for 72 hours DNase signal 2 437 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/c7a49ffb-060d-43be-8e77-ab72a5090a02/ENCFF132BMD.bigWig\ color 6,218,147\ longLabel K562 treated with 0.05% dimethyl sulfoxide for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKO Signal\ track wgEncodeReg4Epigenetics_ENCFF132BMD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF111DZZ ENCSR377MTB + strand bigWig Dorsolateral prefrontal cortex tissue male adult (86 years) + strand total RNA-seq signal 2 437 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/793928b9-cf5c-460f-b2cd-ac20bae9d841/ENCFF111DZZ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (86 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR377MTB + strand\ track wgEncodeReg4RnaSeq_ENCFF111DZZ\ type bigWig\ visibility full\ encTfChipPkENCFF105XWO HepG2 SRSF9 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF9 in HepG2 from ENCODE 3 (ENCFF105XWO) 0 437 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SRSF9 in HepG2 from ENCODE 3 (ENCFF105XWO)\ parent encTfChipPk off\ shortLabel HepG2 SRSF9\ subGroups cellType=HepG2 factor=SRSF9\ track encTfChipPkENCFF105XWO\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward 0 437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward 1 437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ ENCFF380ELC ENCFF380ELC bigWig Heart left ventricle, male adult (43 years): (2) DNase, ENCFF380ELC 2 438 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF380ELC.bw\ color 6,218,147\ longLabel Heart left ventricle, male adult (43 years): (2) DNase, ENCFF380ELC\ maxHeightPixels 30\ parent DNase_view off\ priority 44.1\ shortLabel ENCFF380ELC\ subGroups organ=heart view=DNase_view simpleBiosample=heart_left_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeDNase\ track ENCFF380ELC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF354CMX ENCSR000BQV Signal bigWig H1 SP4 ENCSR000BQV signal 2 438 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/6910ddcd-5f42-439e-959b-c3f4d2912f42/ENCFF354CMX.bigWig\ color 118,158,101\ longLabel H1 SP4 ENCSR000BQV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQV Signal\ track wgEncodeReg4TfChip_ENCFF354CMX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF336FHU ENCSR000EKP Peak bigBed 5 K562 G2 phase DNase peak 4 438 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/c1627ee7-e340-40d5-b1a1-9dde611b66ba/ENCFF336FHU.bigBed\ color 6,218,147\ labelFields none\ longLabel K562 G2 phase DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKP Peak\ track wgEncodeReg4Epigenetics_ENCFF336FHU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF465YRK ENCSR377MTB - strand bigWig Dorsolateral prefrontal cortex tissue male adult (86 years) - strand total RNA-seq signal 2 438 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/2461b409-348b-4af1-a405-4ea902c77ea9/ENCFF465YRK.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (86 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR377MTB - strand\ track wgEncodeReg4RnaSeq_ENCFF465YRK\ type bigWig\ visibility full\ encTfChipPkENCFF239LRW HepG2 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in HepG2 from ENCODE 3 (ENCFF239LRW) 0 438 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in HepG2 from ENCODE 3 (ENCFF239LRW)\ parent encTfChipPk off\ shortLabel HepG2 SUZ12\ subGroups cellType=HepG2 factor=SUZ12\ track encTfChipPkENCFF239LRW\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse 0 438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse 1 438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep2.CNhs13822.13425-144D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2_CNhs13822_13425-144D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13425-144D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep2_CNhs13822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13425-144D5\ urlLabel FANTOM5 Details:\ ENCFF847FPR ENCFF847FPR bigWig Heart right ventricle, male adult (43 years): (2) DNase, ENCFF847FPR 2 439 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF847FPR.bw\ color 6,218,147\ longLabel Heart right ventricle, male adult (43 years): (2) DNase, ENCFF847FPR\ maxHeightPixels 30\ parent DNase_view off\ priority 48.1\ shortLabel ENCFF847FPR\ subGroups organ=heart view=DNase_view simpleBiosample=heart_right_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeDNase\ track ENCFF847FPR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF785HSD ENCSR000BQW Peak bigBed 5 HepG2 MBD4 peaks 4 439 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/d8f00ada-33b1-42f6-9a14-e8f49ac9de70/ENCFF785HSD.bigBed\ labelFields none\ longLabel HepG2 MBD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF785HSD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF334FEV ENCSR000EKP Signal bigWig K562 G2 phase DNase signal 2 439 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/7b12ad7d-622d-4518-bbc0-d23dcd9404d8/ENCFF334FEV.bigWig\ color 6,218,147\ longLabel K562 G2 phase DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKP Signal\ track wgEncodeReg4Epigenetics_ENCFF334FEV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF161EIR ENCSR378WUC + strand bigWig Dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 439 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/976145a6-e4f9-4036-874f-34c9c3fc2320/ENCFF161EIR.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR378WUC + strand\ track wgEncodeReg4RnaSeq_ENCFF161EIR\ type bigWig\ visibility full\ encTfChipPkENCFF234TBW HepG2 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in HepG2 from ENCODE 3 (ENCFF234TBW) 0 439 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in HepG2 from ENCODE 3 (ENCFF234TBW)\ parent encTfChipPk off\ shortLabel HepG2 TAF1\ subGroups cellType=HepG2 factor=TAF1\ track encTfChipPkENCFF234TBW\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward 0 439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward 1 439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ ENCFF431JDU ENCFF431JDU bigWig HCT116: (2) DNase, ENCFF431JDU 2 440 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF431JDU.bw\ color 6,218,147\ longLabel HCT116: (2) DNase, ENCFF431JDU\ maxHeightPixels 30\ parent DNase_view off\ priority 39.1\ shortLabel ENCFF431JDU\ subGroups organ=large_intestine view=DNase_view simpleBiosample=HCT116 biosampleType=cell_line donor=ENCDO000ABE dataType=typeDNase\ track ENCFF431JDU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF936NTH ENCSR000BQW Signal bigWig HepG2 MBD4 ENCSR000BQW signal 2 440 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/86b78d18-558c-4080-9be3-5ec3680857c6/ENCFF936NTH.bigWig\ color 137,152,82\ longLabel HepG2 MBD4 ENCSR000BQW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQW Signal\ track wgEncodeReg4TfChip_ENCFF936NTH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF556VNL ENCSR000EKQ Peak bigBed 5 K562 G1 phase DNase peak 4 440 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/f292027c-2493-40af-aa14-1cdbca85847a/ENCFF556VNL.bigBed\ color 6,218,147\ labelFields none\ longLabel K562 G1 phase DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKQ Peak\ track wgEncodeReg4Epigenetics_ENCFF556VNL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF494GYS ENCSR378WUC - strand bigWig Dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 440 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/936ef83f-8d88-4e7a-b34e-3f33f1e969dc/ENCFF494GYS.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR378WUC - strand\ track wgEncodeReg4RnaSeq_ENCFF494GYS\ type bigWig\ visibility full\ encTfChipPkENCFF718RXL HepG2 TAF15 narrowPeak Transcription Factor ChIP-seq Peaks of TAF15 in HepG2 from ENCODE 3 (ENCFF718RXL) 0 440 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF15 in HepG2 from ENCODE 3 (ENCFF718RXL)\ parent encTfChipPk off\ shortLabel HepG2 TAF15\ subGroups cellType=HepG2 factor=TAF15\ track encTfChipPkENCFF718RXL\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse 0 440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse 1 440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day00%2c%20rep3.CNhs14049.13429-144D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day00, rep3_CNhs14049_13429-144D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13429-144D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day00Rep3_CNhs14049_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13429-144D9\ urlLabel FANTOM5 Details:\ ENCFF978IHV ENCFF978IHV bigWig Caco-2: (2) DNase, ENCFF978IHV 2 441 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF978IHV.bw\ color 6,218,147\ longLabel Caco-2: (2) DNase, ENCFF978IHV\ maxHeightPixels 30\ parent DNase_view off\ priority 18.1\ shortLabel ENCFF978IHV\ subGroups organ=large_intestine view=DNase_view simpleBiosample=Caco-2 biosampleType=cell_line donor=ENCDO000ACR dataType=typeDNase\ track ENCFF978IHV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF169TKU ENCSR000BQX Peak bigBed 5 HepG2 NFIC peaks 4 441 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e4a097bf-d2f4-4e85-8c68-863def967460/ENCFF169TKU.bigBed\ labelFields none\ longLabel HepG2 NFIC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF169TKU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF503WXT ENCSR000EKQ Signal bigWig K562 G1 phase DNase signal 2 441 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/902146b3-9bce-4aac-b3e1-e86f2f6d79f2/ENCFF503WXT.bigWig\ color 6,218,147\ longLabel K562 G1 phase DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKQ Signal\ track wgEncodeReg4Epigenetics_ENCFF503WXT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF527SQU ENCSR379DEC + strand bigWig GM23338 + strand total RNA-seq signal 2 441 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/2063562a-e7c3-428d-9971-b32557b51f25/ENCFF527SQU.bigWig\ color 127,133,209\ longLabel GM23338 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR379DEC + strand\ track wgEncodeReg4RnaSeq_ENCFF527SQU\ type bigWig\ visibility full\ encTfChipPkENCFF126KGW HepG2 TBL1XR1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in HepG2 from ENCODE 3 (ENCFF126KGW) 0 441 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in HepG2 from ENCODE 3 (ENCFF126KGW)\ parent encTfChipPk off\ shortLabel HepG2 TBL1XR1\ subGroups cellType=HepG2 factor=TBL1XR1\ track encTfChipPkENCFF126KGW\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward 0 441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward 1 441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ ENCFF138FMV ENCFF138FMV bigWig Transverse colon, female adult (51 years): (2) DNase, ENCFF138FMV 2 442 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF138FMV.bw\ color 6,218,147\ longLabel Transverse colon, female adult (51 years): (2) DNase, ENCFF138FMV\ maxHeightPixels 30\ parent DNase_view off\ priority 158.1\ shortLabel ENCFF138FMV\ subGroups organ=large_intestine view=DNase_view simpleBiosample=transverse_colon-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF138FMV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF210IKG ENCSR000BQX Signal bigWig HepG2 NFIC ENCSR000BQX signal 2 442 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/61af77c4-9691-4684-820f-6f6e4e12babb/ENCFF210IKG.bigWig\ color 137,152,82\ longLabel HepG2 NFIC ENCSR000BQX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQX Signal\ track wgEncodeReg4TfChip_ENCFF210IKG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF509WBC ENCSR000EKR Peak bigBed 5 K562 treated with 500 μM sodium butyrate for 72 hours DNase peak 4 442 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/c98e8b0d-792d-4645-9405-4c9f497dbf47/ENCFF509WBC.bigBed\ color 6,218,147\ labelFields none\ longLabel K562 treated with 500 μM sodium butyrate for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKR Peak\ track wgEncodeReg4Epigenetics_ENCFF509WBC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF977MYR ENCSR379DEC - strand bigWig GM23338 - strand total RNA-seq signal 2 442 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/99eccf8b-3f13-4156-bffe-375b5dd473d7/ENCFF977MYR.bigWig\ color 127,133,209\ longLabel GM23338 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR379DEC - strand\ track wgEncodeReg4RnaSeq_ENCFF977MYR\ type bigWig\ visibility full\ encTfChipPkENCFF534GKQ HepG2 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in HepG2 from ENCODE 3 (ENCFF534GKQ) 0 442 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBP in HepG2 from ENCODE 3 (ENCFF534GKQ)\ parent encTfChipPk off\ shortLabel HepG2 TBP\ subGroups cellType=HepG2 factor=TBP\ track encTfChipPkENCFF534GKQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse 0 442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse 1 442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep1.CNhs14046.13422-144D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep1_CNhs14046_13422-144D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13422-144D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep1_CNhs14046_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13422-144D2\ urlLabel FANTOM5 Details:\ ENCFF028FLY ENCFF028FLY bigWig Sigmoid colon, male adult (54 years): (2) DNase, ENCFF028FLY 2 443 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF028FLY.bw\ color 6,218,147\ longLabel Sigmoid colon, male adult (54 years): (2) DNase, ENCFF028FLY\ maxHeightPixels 30\ parent DNase_view off\ priority 137.1\ shortLabel ENCFF028FLY\ subGroups organ=large_intestine view=DNase_view simpleBiosample=sigmoid_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF028FLY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF801LKH ENCSR000BQY Peak bigBed 5 K562 PML peaks 4 443 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/bec91d53-7052-4d55-a193-6608507f63ff/ENCFF801LKH.bigBed\ labelFields none\ longLabel K562 PML peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF801LKH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF625OEG ENCSR000EKR Signal bigWig K562 treated with 500 μM sodium butyrate for 72 hours DNase signal 2 443 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/a5e656e7-86c8-4fba-a6a3-c2531a5d4c1b/ENCFF625OEG.bigWig\ color 6,218,147\ longLabel K562 treated with 500 μM sodium butyrate for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKR Signal\ track wgEncodeReg4Epigenetics_ENCFF625OEG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF205VDK ENCSR379YAE + strand bigWig Cardiac muscle cell originated from RUES2 + strand total RNA-seq signal 2 443 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/2a7637dc-95a7-413c-b485-634b71a34616/ENCFF205VDK.bigWig\ color 137,135,170\ longLabel Cardiac muscle cell originated from RUES2 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR379YAE + strand\ track wgEncodeReg4RnaSeq_ENCFF205VDK\ type bigWig\ visibility full\ encTfChipPkENCFF654KVO HepG2 TBX3 1 narrowPeak Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF654KVO) 0 443 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF654KVO)\ parent encTfChipPk off\ shortLabel HepG2 TBX3 1\ subGroups cellType=HepG2 factor=TBX3\ track encTfChipPkENCFF654KVO\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward 0 443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward 1 443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ ENCFF405NTZ ENCFF405NTZ bigWig Transverse colon, male adult (54 years): (2) DNase, ENCFF405NTZ 2 444 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF405NTZ.bw\ color 6,218,147\ longLabel Transverse colon, male adult (54 years): (2) DNase, ENCFF405NTZ\ maxHeightPixels 30\ parent DNase_view off\ priority 161.1\ shortLabel ENCFF405NTZ\ subGroups organ=large_intestine view=DNase_view simpleBiosample=transverse_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF405NTZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF124PYB ENCSR000BQY Signal bigWig K562 PML ENCSR000BQY signal 2 444 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/973835f7-d041-483c-95e7-8e86651c849c/ENCFF124PYB.bigWig\ color 254,75,173\ longLabel K562 PML ENCSR000BQY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQY Signal\ track wgEncodeReg4TfChip_ENCFF124PYB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF762IMP ENCSR000EKT Peak bigBed 5 LNCaP clone FGC DNase peak 4 444 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/0d571228-62e0-4e46-a6c6-a0a51824f9da/ENCFF762IMP.bigBed\ color 6,218,147\ labelFields none\ longLabel LNCaP clone FGC DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKT Peak\ track wgEncodeReg4Epigenetics_ENCFF762IMP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF229SQR ENCSR379YAE - strand bigWig Cardiac muscle cell originated from RUES2 - strand total RNA-seq signal 2 444 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/7687af8a-a963-4b19-bf54-f50d1e1473ac/ENCFF229SQR.bigWig\ color 137,135,170\ longLabel Cardiac muscle cell originated from RUES2 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR379YAE - strand\ track wgEncodeReg4RnaSeq_ENCFF229SQR\ type bigWig\ visibility full\ encTfChipPkENCFF887DUY HepG2 TBX3 2 narrowPeak Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF887DUY) 0 444 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TBX3 in HepG2 from ENCODE 3 (ENCFF887DUY)\ parent encTfChipPk off\ shortLabel HepG2 TBX3 2\ subGroups cellType=HepG2 factor=TBX3\ track encTfChipPkENCFF887DUY\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse 0 444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse 1 444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep2.CNhs13823.13426-144D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep2_CNhs13823_13426-144D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13426-144D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep2_CNhs13823_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13426-144D6\ urlLabel FANTOM5 Details:\ ENCFF841ILF ENCFF841ILF bigWig Colonic mucosa, female adult (41 years): (2) DNase, ENCFF841ILF 2 445 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF841ILF.bw\ color 6,218,147\ longLabel Colonic mucosa, female adult (41 years): (2) DNase, ENCFF841ILF\ maxHeightPixels 30\ parent DNase_view off\ priority 22.1\ shortLabel ENCFF841ILF\ subGroups organ=large_intestine view=DNase_view simpleBiosample=colonic_mucosa-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeDNase\ track ENCFF841ILF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF267JUM ENCSR000BQZ Peak bigBed 5 GM12878 STAT5A peaks 4 445 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/5a24e61a-7a42-429c-ad45-03c12edbf80f/ENCFF267JUM.bigBed\ labelFields none\ longLabel GM12878 STAT5A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF267JUM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF086MWH ENCSR000EKT Signal bigWig LNCaP clone FGC DNase signal 2 445 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/f3eb7f25-3742-417c-b446-7fb3ced6c8eb/ENCFF086MWH.bigWig\ color 6,218,147\ longLabel LNCaP clone FGC DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKT Signal\ track wgEncodeReg4Epigenetics_ENCFF086MWH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF358XLV ENCSR381OTM + strand bigWig HFFc6 + strand total RNA-seq signal 2 445 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/374691de-2764-4dd4-b698-b806e6a63a68/ENCFF358XLV.bigWig\ color 20,74,159\ longLabel HFFc6 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR381OTM + strand\ track wgEncodeReg4RnaSeq_ENCFF358XLV\ type bigWig\ visibility full\ encTfChipPkENCFF820PHL HepG2 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF820PHL) 0 445 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF820PHL)\ parent encTfChipPk off\ shortLabel HepG2 TCF12 1\ subGroups cellType=HepG2 factor=TCF12\ track encTfChipPkENCFF820PHL\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward 0 445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward 1 445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ ENCFF291LZE ENCFF291LZE bigWig Transverse colon, female adult (53 years): (2) DNase, ENCFF291LZE 2 446 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF291LZE.bw\ color 6,218,147\ longLabel Transverse colon, female adult (53 years): (2) DNase, ENCFF291LZE\ maxHeightPixels 30\ parent DNase_view off\ priority 159.1\ shortLabel ENCFF291LZE\ subGroups organ=large_intestine view=DNase_view simpleBiosample=transverse_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF291LZE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF615YAM ENCSR000BQZ Signal bigWig GM12878 STAT5A ENCSR000BQZ signal 2 446 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/e1789e15-a7a9-4a44-a0df-152de38b4cfd/ENCFF615YAM.bigWig\ color 254,75,173\ longLabel GM12878 STAT5A ENCSR000BQZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BQZ Signal\ track wgEncodeReg4TfChip_ENCFF615YAM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF548XZO ENCSR000EKU Peak bigBed 5 LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours DNase peak 4 446 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/a003b660-9eb4-4f02-b116-4b7307be2db2/ENCFF548XZO.bigBed\ color 6,218,147\ labelFields none\ longLabel LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKU Peak\ track wgEncodeReg4Epigenetics_ENCFF548XZO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF010FBD ENCSR381OTM - strand bigWig HFFc6 - strand total RNA-seq signal 2 446 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/a4acefb7-8452-48e2-aea6-361750a25f3e/ENCFF010FBD.bigWig\ color 20,74,159\ longLabel HFFc6 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR381OTM - strand\ track wgEncodeReg4RnaSeq_ENCFF010FBD\ type bigWig\ visibility full\ encTfChipPkENCFF299JYV HepG2 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF299JYV) 0 446 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in HepG2 from ENCODE 3 (ENCFF299JYV)\ parent encTfChipPk off\ shortLabel HepG2 TCF12 2\ subGroups cellType=HepG2 factor=TCF12\ track encTfChipPkENCFF299JYV\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse 0 446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse 1 446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day06%2c%20rep3.CNhs14050.13430-144E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day06, rep3_CNhs14050_13430-144E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13430-144E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day06Rep3_CNhs14050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13430-144E1\ urlLabel FANTOM5 Details:\ ENCFF299OOV ENCFF299OOV bigWig Sigmoid colon, female adult (53 years): (2) DNase, ENCFF299OOV 2 447 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF299OOV.bw\ color 6,218,147\ longLabel Sigmoid colon, female adult (53 years): (2) DNase, ENCFF299OOV\ maxHeightPixels 30\ parent DNase_view off\ priority 136.1\ shortLabel ENCFF299OOV\ subGroups organ=large_intestine view=DNase_view simpleBiosample=sigmoid_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF299OOV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF784ATC ENCSR000BRG Peak bigBed 5 GM12878 EGR1 peaks 4 447 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/7083f1ba-2e87-441b-9cac-8255cc11b85a/ENCFF784ATC.bigBed\ labelFields none\ longLabel GM12878 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF784ATC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF348HVC ENCSR000EKU Signal bigWig LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours DNase signal 2 447 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/7240428d-9b3f-4bf5-9a6f-689b6b7beefa/ENCFF348HVC.bigWig\ color 6,218,147\ longLabel LNCaP clone FGC treated with 1 nM 17β-hydroxy-17-methylestra-4,9,11-trien-3-one for 12 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKU Signal\ track wgEncodeReg4Epigenetics_ENCFF348HVC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF362PNM ENCSR385KVQ + strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 447 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6680c1ac-0834-45dd-8e60-1586d1ff194f/ENCFF362PNM.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR385KVQ + strand\ track wgEncodeReg4RnaSeq_ENCFF362PNM\ type bigWig\ visibility full\ encTfChipPkENCFF928MIN HepG2 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in HepG2 from ENCODE 3 (ENCFF928MIN) 0 447 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in HepG2 from ENCODE 3 (ENCFF928MIN)\ parent encTfChipPk off\ shortLabel HepG2 TCF7\ subGroups cellType=HepG2 factor=TCF7\ track encTfChipPkENCFF928MIN\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward 0 447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward 1 447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ ENCFF753MXL ENCFF753MXL bigWig Transverse colon, male adult (37 years): (2) DNase, ENCFF753MXL 2 448 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF753MXL.bw\ color 6,218,147\ longLabel Transverse colon, male adult (37 years): (2) DNase, ENCFF753MXL\ maxHeightPixels 30\ parent DNase_view off\ priority 160.1\ shortLabel ENCFF753MXL\ subGroups organ=large_intestine view=DNase_view simpleBiosample=transverse_colon-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF753MXL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF082RUV ENCSR000BRG Signal bigWig GM12878 EGR1 ENCSR000BRG signal 2 448 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/395ed78e-0e99-4dcd-9983-dd3da86162c8/ENCFF082RUV.bigWig\ color 254,75,173\ longLabel GM12878 EGR1 ENCSR000BRG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRG Signal\ track wgEncodeReg4TfChip_ENCFF082RUV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF519VZU ENCSR000EKV Peak bigBed 5 MCF-7 DNase peak 4 448 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/e377fd9e-0e61-4719-858e-618eb06b8d8e/ENCFF519VZU.bigBed\ color 6,218,147\ labelFields none\ longLabel MCF-7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKV Peak\ track wgEncodeReg4Epigenetics_ENCFF519VZU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF061YLN ENCSR385KVQ - strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 448 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6112c804-a3e1-49b5-ac96-b7a78ec958da/ENCFF061YLN.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR385KVQ - strand\ track wgEncodeReg4RnaSeq_ENCFF061YLN\ type bigWig\ visibility full\ encTfChipPkENCFF912SQI HepG2 TFAP4 narrowPeak Transcription Factor ChIP-seq Peaks of TFAP4 in HepG2 from ENCODE 3 (ENCFF912SQI) 0 448 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TFAP4 in HepG2 from ENCODE 3 (ENCFF912SQI)\ parent encTfChipPk off\ shortLabel HepG2 TFAP4\ subGroups cellType=HepG2 factor=TFAP4\ track encTfChipPkENCFF912SQI\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse 0 448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse 1 448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep1.CNhs14047.13423-144D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep1_CNhs14047_13423-144D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13423-144D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep1_CNhs14047_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13423-144D3\ urlLabel FANTOM5 Details:\ ENCFF546MZK ENCFF546MZK bigWig HepG2: (2) DNase, ENCFF546MZK 2 449 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF546MZK.bw\ color 6,218,147\ longLabel HepG2: (2) DNase, ENCFF546MZK\ maxHeightPixels 30\ parent DNase_view off\ priority 54.1\ shortLabel ENCFF546MZK\ subGroups organ=liver view=DNase_view simpleBiosample=HepG2 biosampleType=cell_line donor=ENCDO000AAC dataType=typeDNase\ track ENCFF546MZK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF681QPL ENCSR000BRH Peak bigBed 5 GM12878 MTA3 peaks 4 449 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/dd620091-7ac4-412a-926c-ca59f566c150/ENCFF681QPL.bigBed\ labelFields none\ longLabel GM12878 MTA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF681QPL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF270ENA ENCSR000EKV Signal bigWig MCF-7 DNase signal 2 449 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/0fe14726-8e83-472a-a860-db67976410de/ENCFF270ENA.bigWig\ color 6,218,147\ longLabel MCF-7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKV Signal\ track wgEncodeReg4Epigenetics_ENCFF270ENA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF625QBW ENCSR388NNP + strand bigWig Natural killer cell male adult (47 years) + strand total RNA-seq signal 2 449 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/13fa4f09-7447-4f3c-bae0-79262f9604ac/ENCFF625QBW.bigWig\ color 254,75,173\ longLabel Natural killer cell male adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR388NNP + strand\ track wgEncodeReg4RnaSeq_ENCFF625QBW\ type bigWig\ visibility full\ encTfChipPkENCFF063GDN HepG2 TRIM22 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in HepG2 from ENCODE 3 (ENCFF063GDN) 0 449 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in HepG2 from ENCODE 3 (ENCFF063GDN)\ parent encTfChipPk off\ shortLabel HepG2 TRIM22\ subGroups cellType=HepG2 factor=TRIM22\ track encTfChipPkENCFF063GDN\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward 0 449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward 1 449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ ENCFF902EEH ENCFF902EEH bigWig Hepatocyte, female embryo (5 days): (2) DNase, ENCFF902EEH 2 450 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF902EEH.bw\ color 6,218,147\ longLabel Hepatocyte, female embryo (5 days): (2) DNase, ENCFF902EEH\ maxHeightPixels 30\ parent DNase_view off\ priority 53.1\ shortLabel ENCFF902EEH\ subGroups organ=liver view=DNase_view simpleBiosample=hepatocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF902EEH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF544EYZ ENCSR000BRH Signal bigWig GM12878 MTA3 ENCSR000BRH signal 2 450 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/28/5f1479db-e663-4337-9592-ed0e7042551a/ENCFF544EYZ.bigWig\ color 254,75,173\ longLabel GM12878 MTA3 ENCSR000BRH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRH Signal\ track wgEncodeReg4TfChip_ENCFF544EYZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF010FNU ENCSR000EKW Peak bigBed 5 MCF-7 expressing RNAi DNase peak 4 450 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/9fca5275-7a80-4a6b-bf13-f7f41c369885/ENCFF010FNU.bigBed\ color 6,218,147\ labelFields none\ longLabel MCF-7 expressing RNAi DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKW Peak\ track wgEncodeReg4Epigenetics_ENCFF010FNU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF744YDW ENCSR388NNP - strand bigWig Natural killer cell male adult (47 years) - strand total RNA-seq signal 2 450 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/8f91c396-9221-4039-a6f7-8d853e576c10/ENCFF744YDW.bigWig\ color 254,75,173\ longLabel Natural killer cell male adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR388NNP - strand\ track wgEncodeReg4RnaSeq_ENCFF744YDW\ type bigWig\ visibility full\ encTfChipPkENCFF034KUO HepG2 U2AF1 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF1 in HepG2 from ENCODE 3 (ENCFF034KUO) 0 450 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of U2AF1 in HepG2 from ENCODE 3 (ENCFF034KUO)\ parent encTfChipPk off\ shortLabel HepG2 U2AF1\ subGroups cellType=HepG2 factor=U2AF1\ track encTfChipPkENCFF034KUO\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse 0 450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse 1 450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep2.CNhs13824.13427-144D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep2_CNhs13824_13427-144D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13427-144D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep2_CNhs13824_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13427-144D7\ urlLabel FANTOM5 Details:\ ENCFF020EPF ENCFF020EPF bigWig Right lobe of liver, female adult (53 years): (2) DNase, ENCFF020EPF 2 451 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF020EPF.bw\ color 6,218,147\ longLabel Right lobe of liver, female adult (53 years): (2) DNase, ENCFF020EPF\ maxHeightPixels 30\ parent DNase_view on\ priority 135.1\ shortLabel ENCFF020EPF\ subGroups organ=liver view=DNase_view simpleBiosample=right_lobe_of_liver-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF020EPF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF395WHA ENCSR000BRI Peak bigBed 5 GM12878 RUNX3 peaks 4 451 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/732eb113-2f24-4f39-be54-81b9b67d0219/ENCFF395WHA.bigBed\ labelFields none\ longLabel GM12878 RUNX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF395WHA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF637NSW ENCSR000EKW Signal bigWig MCF-7 expressing RNAi DNase signal 2 451 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/3641f181-372b-46ca-aaf3-d2966e41d8f8/ENCFF637NSW.bigWig\ color 6,218,147\ longLabel MCF-7 expressing RNAi DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKW Signal\ track wgEncodeReg4Epigenetics_ENCFF637NSW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF804VSU ENCSR390MBR + strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal 2 451 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/3c0fef87-5694-49e9-9598-81feef080e1d/ENCFF804VSU.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR390MBR + strand\ track wgEncodeReg4RnaSeq_ENCFF804VSU\ type bigWig\ visibility full\ encTfChipPkENCFF562ADR HepG2 U2AF2 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF2 in HepG2 from ENCODE 3 (ENCFF562ADR) 0 451 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of U2AF2 in HepG2 from ENCODE 3 (ENCFF562ADR)\ parent encTfChipPk off\ shortLabel HepG2 U2AF2\ subGroups cellType=HepG2 factor=U2AF2\ track encTfChipPkENCFF562ADR\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward 0 451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward 1 451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ ENCFF971HXR ENCFF971HXR bigWig IMR-90: (2) DNase, ENCFF971HXR 2 452 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF971HXR.bw\ color 6,218,147\ longLabel IMR-90: (2) DNase, ENCFF971HXR\ maxHeightPixels 30\ parent DNase_view off\ priority 57.1\ shortLabel ENCFF971HXR\ subGroups organ=lung view=DNase_view simpleBiosample=IMR-90 biosampleType=cell_line donor=ENCDO000AAX dataType=typeDNase\ track ENCFF971HXR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF298OKU ENCSR000BRI Signal bigWig GM12878 RUNX3 ENCSR000BRI signal 2 452 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/af2400ca-2c90-4e7d-9a87-a1da0d218fc4/ENCFF298OKU.bigWig\ color 254,75,173\ longLabel GM12878 RUNX3 ENCSR000BRI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRI Signal\ track wgEncodeReg4TfChip_ENCFF298OKU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF391NEE ENCSR000EKY Peak bigBed 5 MCF-7 treated with 10 mM lactate for 24 hours DNase peak 4 452 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/88707759-c3fa-4a1b-b90e-c8b9b2b9a2b4/ENCFF391NEE.bigBed\ color 6,218,147\ labelFields none\ longLabel MCF-7 treated with 10 mM lactate for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKY Peak\ track wgEncodeReg4Epigenetics_ENCFF391NEE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF082GXZ ENCSR390MBR - strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal 2 452 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/c127728e-ef5e-41e5-bc1c-fbefda7afaab/ENCFF082GXZ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR390MBR - strand\ track wgEncodeReg4RnaSeq_ENCFF082GXZ\ type bigWig\ visibility full\ encTfChipPkENCFF914IFQ HepG2 USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in HepG2 from ENCODE 3 (ENCFF914IFQ) 0 452 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of USF1 in HepG2 from ENCODE 3 (ENCFF914IFQ)\ parent encTfChipPk off\ shortLabel HepG2 USF1\ subGroups cellType=HepG2 factor=USF1\ track encTfChipPkENCFF914IFQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse 0 452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse 1 452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day12%2c%20rep3.CNhs14051.13431-144E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day12, rep3_CNhs14051_13431-144E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13431-144E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day12Rep3_CNhs14051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13431-144E2\ urlLabel FANTOM5 Details:\ ENCFF153DHV ENCFF153DHV bigWig AG04450: (2) DNase, ENCFF153DHV 2 453 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF153DHV.bw\ color 6,218,147\ longLabel AG04450: (2) DNase, ENCFF153DHV\ maxHeightPixels 30\ parent DNase_view off\ priority 7.1\ shortLabel ENCFF153DHV\ subGroups organ=lung view=DNase_view simpleBiosample=AG04450 biosampleType=cell_line donor=ENCDO001AAA dataType=typeDNase\ track ENCFF153DHV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF673NIK ENCSR000BRK Peak bigBed 5 K562 TEAD4 peaks 4 453 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/6dc09fb9-d33b-4f7b-b64d-7abe28a81baa/ENCFF673NIK.bigBed\ labelFields none\ longLabel K562 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF673NIK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF799DOV ENCSR000EKY Signal bigWig MCF-7 treated with 10 mM lactate for 24 hours DNase signal 2 453 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/2cbd9dca-557a-435c-b17a-14d2a98b380d/ENCFF799DOV.bigWig\ color 6,218,147\ longLabel MCF-7 treated with 10 mM lactate for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EKY Signal\ track wgEncodeReg4Epigenetics_ENCFF799DOV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF248QVA ENCSR391VGU + strand bigWig Heart left ventricle tissue female adult (53 years) + strand total RNA-seq signal 2 453 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/604520a5-ba96-45a0-8611-8c2861b41a4a/ENCFF248QVA.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR391VGU + strand\ track wgEncodeReg4RnaSeq_ENCFF248QVA\ type bigWig\ visibility full\ encTfChipPkENCFF790ZAQ HepG2 XRCC5 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC5 in HepG2 from ENCODE 3 (ENCFF790ZAQ) 0 453 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of XRCC5 in HepG2 from ENCODE 3 (ENCFF790ZAQ)\ parent encTfChipPk off\ shortLabel HepG2 XRCC5\ subGroups cellType=HepG2 factor=XRCC5\ track encTfChipPkENCFF790ZAQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward 0 453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward 1 453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ ENCFF623TJB ENCFF623TJB bigWig PC-9: (2) DNase, ENCFF623TJB 2 454 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF623TJB.bw\ color 6,218,147\ longLabel PC-9: (2) DNase, ENCFF623TJB\ maxHeightPixels 30\ parent DNase_view off\ priority 126.1\ shortLabel ENCFF623TJB\ subGroups organ=lung view=DNase_view simpleBiosample=PC-9 biosampleType=cell_line donor=ENCDO647UHQ dataType=typeDNase\ track ENCFF623TJB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF442LBB ENCSR000BRK Signal bigWig K562 TEAD4 ENCSR000BRK signal 2 454 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/ca5642a6-bbd3-499c-96a6-913ce2ab6fb1/ENCFF442LBB.bigWig\ color 254,75,173\ longLabel K562 TEAD4 ENCSR000BRK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRK Signal\ track wgEncodeReg4TfChip_ENCFF442LBB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF561STD ENCSR000ELA Peak bigBed 5 D721Med DNase peak 4 454 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/708c68ec-8479-4bc9-b620-233dc4f97ae6/ENCFF561STD.bigBed\ color 6,218,147\ labelFields none\ longLabel D721Med DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELA Peak\ track wgEncodeReg4Epigenetics_ENCFF561STD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF730PXW ENCSR391VGU - strand bigWig Heart left ventricle tissue female adult (53 years) - strand total RNA-seq signal 2 454 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/eff35b3d-8130-4af4-9b28-e1dab6607448/ENCFF730PXW.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR391VGU - strand\ track wgEncodeReg4RnaSeq_ENCFF730PXW\ type bigWig\ visibility full\ encTfChipPkENCFF177YDT HepG2 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in HepG2 from ENCODE 3 (ENCFF177YDT) 0 454 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in HepG2 from ENCODE 3 (ENCFF177YDT)\ parent encTfChipPk off\ shortLabel HepG2 YY1\ subGroups cellType=HepG2 factor=YY1\ track encTfChipPkENCFF177YDT\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse 0 454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse 1 454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep1.CNhs13916.13424-144D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep1_CNhs13916_13424-144D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13424-144D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep1_CNhs13916_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13424-144D4\ urlLabel FANTOM5 Details:\ ENCFF279ZNA ENCFF279ZNA bigWig Upper lobe of left lung, female adult (51 years): (2) DNase, ENCFF279ZNA 2 455 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF279ZNA.bw\ color 6,218,147\ longLabel Upper lobe of left lung, female adult (51 years): (2) DNase, ENCFF279ZNA\ maxHeightPixels 30\ parent DNase_view off\ priority 163.1\ shortLabel ENCFF279ZNA\ subGroups organ=lung view=DNase_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF279ZNA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF259FWL ENCSR000BRN Peak bigBed 5 GM12878 NFIC peaks 4 455 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a4c34ba3-24cc-4a70-a1af-33e6de70e042/ENCFF259FWL.bigBed\ labelFields none\ longLabel GM12878 NFIC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF259FWL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF715SIC ENCSR000ELA Signal bigWig D721Med DNase signal 2 455 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/6918b16b-e057-4929-ba41-35b7f24404a1/ENCFF715SIC.bigWig\ color 6,218,147\ longLabel D721Med DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELA Signal\ track wgEncodeReg4Epigenetics_ENCFF715SIC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF607FEG ENCSR394HJK + strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal 2 455 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/c0826239-672c-4d5f-a32b-bd30b5c59e26/ENCFF607FEG.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR394HJK + strand\ track wgEncodeReg4RnaSeq_ENCFF607FEG\ type bigWig\ visibility full\ encTfChipPkENCFF943WRA HepG2 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in HepG2 from ENCODE 3 (ENCFF943WRA) 0 455 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in HepG2 from ENCODE 3 (ENCFF943WRA)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB33\ subGroups cellType=HepG2 factor=ZBTB33\ track encTfChipPkENCFF943WRA\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward 0 455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward 1 455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ ENCFF990HTO ENCFF990HTO bigWig Left lung, male adult (40 years): (2) DNase, ENCFF990HTO 2 456 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF990HTO.bw\ color 6,218,147\ longLabel Left lung, male adult (40 years): (2) DNase, ENCFF990HTO\ maxHeightPixels 30\ parent DNase_view off\ priority 61.1\ shortLabel ENCFF990HTO\ subGroups organ=lung view=DNase_view simpleBiosample=left_lung-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeDNase\ track ENCFF990HTO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF766JTP ENCSR000BRN Signal bigWig GM12878 NFIC ENCSR000BRN signal 2 456 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1ee7ec88-aec4-4ca6-9750-74721dc0bda1/ENCFF766JTP.bigWig\ color 254,75,173\ longLabel GM12878 NFIC ENCSR000BRN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRN Signal\ track wgEncodeReg4TfChip_ENCFF766JTP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF811NWJ ENCSR000ELB Peak bigBed 5 D341Med DNase peak 4 456 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/4f9fafbc-4110-4c5f-8024-88cecb3a6139/ENCFF811NWJ.bigBed\ color 6,218,147\ labelFields none\ longLabel D341Med DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELB Peak\ track wgEncodeReg4Epigenetics_ENCFF811NWJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF632ZBY ENCSR394HJK - strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal 2 456 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/2799ce3f-0253-45c1-bce8-adab7f98ee98/ENCFF632ZBY.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR394HJK - strand\ track wgEncodeReg4RnaSeq_ENCFF632ZBY\ type bigWig\ visibility full\ encTfChipPkENCFF624WDI HepG2 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in HepG2 from ENCODE 3 (ENCFF624WDI) 0 456 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in HepG2 from ENCODE 3 (ENCFF624WDI)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB40\ subGroups cellType=HepG2 factor=ZBTB40\ track encTfChipPkENCFF624WDI\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse 0 456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse 1 456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep2.CNhs13825.13428-144D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep2_CNhs13825_13428-144D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13428-144D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep2_CNhs13825_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13428-144D8\ urlLabel FANTOM5 Details:\ ENCFF505TAB ENCFF505TAB bigWig Upper lobe of left lung, male adult (54 years): (2) DNase, ENCFF505TAB 2 457 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF505TAB.bw\ color 6,218,147\ longLabel Upper lobe of left lung, male adult (54 years): (2) DNase, ENCFF505TAB\ maxHeightPixels 30\ parent DNase_view off\ priority 166.1\ shortLabel ENCFF505TAB\ subGroups organ=lung view=DNase_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF505TAB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF176QIX ENCSR000BRO Peak bigBed 5 HepG2 MYBL2 peaks 4 457 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e4d8be8d-07eb-4f99-a6a2-5e5a20af8d84/ENCFF176QIX.bigBed\ labelFields none\ longLabel HepG2 MYBL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF176QIX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF003AZB ENCSR000ELB Signal bigWig D341Med DNase signal 2 457 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/18668f6b-3e2d-48a0-8b9f-6d34d887f3f7/ENCFF003AZB.bigWig\ color 6,218,147\ longLabel D341Med DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELB Signal\ track wgEncodeReg4Epigenetics_ENCFF003AZB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF733YEJ ENCSR394ZSF + strand bigWig Dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal 2 457 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/b7e7f9d2-33d7-4439-a9e5-49f9d2c070fd/ENCFF733YEJ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR394ZSF + strand\ track wgEncodeReg4RnaSeq_ENCFF733YEJ\ type bigWig\ visibility full\ encTfChipPkENCFF953JQD HepG2 ZBTB7A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7A in HepG2 from ENCODE 3 (ENCFF953JQD) 0 457 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7A in HepG2 from ENCODE 3 (ENCFF953JQD)\ parent encTfChipPk off\ shortLabel HepG2 ZBTB7A\ subGroups cellType=HepG2 factor=ZBTB7A\ track encTfChipPkENCFF953JQD\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward 0 457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward 1 457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=forward\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ ENCFF421SBY ENCFF421SBY bigWig Lower lobe of left lung, male adult (60 years): (2) DNase, ENCFF421SBY 2 458 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF421SBY.bw\ color 6,218,147\ longLabel Lower lobe of left lung, male adult (60 years): (2) DNase, ENCFF421SBY\ maxHeightPixels 30\ parent DNase_view off\ priority 64.1\ shortLabel ENCFF421SBY\ subGroups organ=lung view=DNase_view simpleBiosample=lower_lobe_of_left_lung-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeDNase\ track ENCFF421SBY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF678BPN ENCSR000BRO Signal bigWig HepG2 MYBL2 ENCSR000BRO signal 2 458 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5790f7e6-b619-4445-bd7a-17dcc543a55c/ENCFF678BPN.bigWig\ color 137,152,82\ longLabel HepG2 MYBL2 ENCSR000BRO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRO Signal\ track wgEncodeReg4TfChip_ENCFF678BPN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF243DNR ENCSR000ELD Peak bigBed 5 Epidermal melanocyte DNase peak 4 458 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/dd60c191-6194-4dc3-8c20-17d46f139873/ENCFF243DNR.bigBed\ color 6,218,147\ labelFields none\ longLabel Epidermal melanocyte DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELD Peak\ track wgEncodeReg4Epigenetics_ENCFF243DNR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF935KUB ENCSR394ZSF - strand bigWig Dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal 2 458 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/fb26f383-e293-4f64-85a7-3b4306f52103/ENCFF935KUB.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR394ZSF - strand\ track wgEncodeReg4RnaSeq_ENCFF935KUB\ type bigWig\ visibility full\ encTfChipPkENCFF964KDQ HepG2 ZHX2 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX2 in HepG2 from ENCODE 3 (ENCFF964KDQ) 0 458 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZHX2 in HepG2 from ENCODE 3 (ENCFF964KDQ)\ parent encTfChipPk off\ shortLabel HepG2 ZHX2\ subGroups cellType=HepG2 factor=ZHX2\ track encTfChipPkENCFF964KDQ\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse 0 458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse 1 458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C11-CRL2429%2c%20day18%2c%20rep3.CNhs13917.13432-144E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C11-CRL2429, day18, rep3_CNhs13917_13432-144E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13432-144E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_1 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC11CRL2429Day18Rep3_CNhs13917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13432-144E3\ urlLabel FANTOM5 Details:\ ENCFF935VSX ENCFF935VSX bigWig Left lung, female child (16 years): (2) DNase, ENCFF935VSX 2 459 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF935VSX.bw\ color 6,218,147\ longLabel Left lung, female child (16 years): (2) DNase, ENCFF935VSX\ maxHeightPixels 30\ parent DNase_view off\ priority 60.1\ shortLabel ENCFF935VSX\ subGroups organ=lung view=DNase_view simpleBiosample=left_lung-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeDNase\ track ENCFF935VSX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF006QNB ENCSR000BRP Peak bigBed 5 HepG2 TEAD4 peaks 4 459 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/2275d8d0-adac-46c9-934e-a8d8276d0813/ENCFF006QNB.bigBed\ labelFields none\ longLabel HepG2 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF006QNB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF321TEC ENCSR000ELD Signal bigWig Epidermal melanocyte DNase signal 2 459 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/bef45ce1-17a2-4008-b9fb-979ff1a5c53c/ENCFF321TEC.bigWig\ color 6,218,147\ longLabel Epidermal melanocyte DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELD Signal\ track wgEncodeReg4Epigenetics_ENCFF321TEC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF939BQK ENCSR395DKP + strand bigWig Dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal 2 459 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/15771906-c1f8-4099-82ed-38903e6f101d/ENCFF939BQK.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR395DKP + strand\ track wgEncodeReg4RnaSeq_ENCFF939BQK\ type bigWig\ visibility full\ encTfChipPkENCFF721NEC HepG2 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in HepG2 from ENCODE 3 (ENCFF721NEC) 0 459 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in HepG2 from ENCODE 3 (ENCFF721NEC)\ parent encTfChipPk off\ shortLabel HepG2 ZKSCAN1\ subGroups cellType=HepG2 factor=ZKSCAN1\ track encTfChipPkENCFF721NEC\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward 0 459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward 1 459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ ENCFF960WAV ENCFF960WAV bigWig Upper lobe of left lung, female adult (53 years): (2) DNase, ENCFF960WAV 2 460 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF960WAV.bw\ color 6,218,147\ longLabel Upper lobe of left lung, female adult (53 years): (2) DNase, ENCFF960WAV\ maxHeightPixels 30\ parent DNase_view off\ priority 164.1\ shortLabel ENCFF960WAV\ subGroups organ=lung view=DNase_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF960WAV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF324SMM ENCSR000BRP Signal bigWig HepG2 TEAD4 ENCSR000BRP signal 2 460 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/e30ad3b3-1894-4641-9cc7-1b929c827d09/ENCFF324SMM.bigWig\ color 137,152,82\ longLabel HepG2 TEAD4 ENCSR000BRP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRP Signal\ track wgEncodeReg4TfChip_ENCFF324SMM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF919XIX ENCSR000ELE Peak bigBed 5 CD14-positive monocyte female DNase peak 4 460 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/0f869ef2-678f-417c-88de-f9f732e2bc89/ENCFF919XIX.bigBed\ color 6,218,147\ labelFields none\ longLabel CD14-positive monocyte female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELE Peak\ track wgEncodeReg4Epigenetics_ENCFF919XIX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF611QTO ENCSR395DKP - strand bigWig Dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal 2 460 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/253bf99b-522e-42ac-a180-8b0ad2e8b055/ENCFF611QTO.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR395DKP - strand\ track wgEncodeReg4RnaSeq_ENCFF611QTO\ type bigWig\ visibility full\ encTfChipPkENCFF769SEZ HepG2 ZMYM3 narrowPeak Transcription Factor ChIP-seq Peaks of ZMYM3 in HepG2 from ENCODE 3 (ENCFF769SEZ) 0 460 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZMYM3 in HepG2 from ENCODE 3 (ENCFF769SEZ)\ parent encTfChipPk off\ shortLabel HepG2 ZMYM3\ subGroups cellType=HepG2 factor=ZMYM3\ track encTfChipPkENCFF769SEZ\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse 0 460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse 1 460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep1.CNhs13826.13433-144E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep1_CNhs13826_13433-144E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13433-144E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep1_CNhs13826_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13433-144E4\ urlLabel FANTOM5 Details:\ ENCFF674RXU ENCFF674RXU bigWig Upper lobe of left lung, male adult (37 years): (2) DNase, ENCFF674RXU 2 461 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF674RXU.bw\ color 6,218,147\ longLabel Upper lobe of left lung, male adult (37 years): (2) DNase, ENCFF674RXU\ maxHeightPixels 30\ parent DNase_view off\ priority 165.1\ shortLabel ENCFF674RXU\ subGroups organ=lung view=DNase_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF674RXU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF194QGF ENCSR000BRQ Peak bigBed 5 K562 CEBPB peaks 4 461 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6281e705-fa0d-46af-939c-577bee094668/ENCFF194QGF.bigBed\ labelFields none\ longLabel K562 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF194QGF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF608PTO ENCSR000ELE Signal bigWig CD14-positive monocyte female DNase signal 2 461 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/b6130150-80cf-41d3-98fd-2318fce09bb7/ENCFF608PTO.bigWig\ color 6,218,147\ longLabel CD14-positive monocyte female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELE Signal\ track wgEncodeReg4Epigenetics_ENCFF608PTO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF833EAI ENCSR397GDU + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 461 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/c9821acb-7a53-44c6-ab3a-d40818bab166/ENCFF833EAI.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR397GDU + strand\ track wgEncodeReg4RnaSeq_ENCFF833EAI\ type bigWig\ visibility full\ encTfChipPkENCFF657ZXY HepG2 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in HepG2 from ENCODE 3 (ENCFF657ZXY) 0 461 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in HepG2 from ENCODE 3 (ENCFF657ZXY)\ parent encTfChipPk off\ shortLabel HepG2 ZNF207\ subGroups cellType=HepG2 factor=ZNF207\ track encTfChipPkENCFF657ZXY\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward 0 461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward 1 461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ ENCFF615BRP ENCFF615BRP bigWig Lower lobe of left lung, female adult (59 years): (2) DNase, ENCFF615BRP 2 462 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF615BRP.bw\ color 6,218,147\ longLabel Lower lobe of left lung, female adult (59 years): (2) DNase, ENCFF615BRP\ maxHeightPixels 30\ parent DNase_view off\ priority 63.1\ shortLabel ENCFF615BRP\ subGroups organ=lung view=DNase_view simpleBiosample=lower_lobe_of_left_lung-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeDNase\ track ENCFF615BRP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF018MOC ENCSR000BRQ Signal bigWig K562 CEBPB ENCSR000BRQ signal 2 462 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d422ec14-64bf-46cb-9689-178fb6e0a622/ENCFF018MOC.bigWig\ color 254,75,173\ longLabel K562 CEBPB ENCSR000BRQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRQ Signal\ track wgEncodeReg4TfChip_ENCFF018MOC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF539GKA ENCSR000ELG Peak bigBed 5 Naive B cell DNase peak 4 462 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/a9e896e0-8d4c-4647-a7df-5305ae05bda9/ENCFF539GKA.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive B cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELG Peak\ track wgEncodeReg4Epigenetics_ENCFF539GKA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF405MYG ENCSR397GDU - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 462 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/e5576a2f-cbcc-44d5-8a57-802aa5f43651/ENCFF405MYG.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR397GDU - strand\ track wgEncodeReg4RnaSeq_ENCFF405MYG\ type bigWig\ visibility full\ encTfChipPkENCFF904QAD HepG2 ZNF24 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF904QAD) 0 462 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF904QAD)\ parent encTfChipPk off\ shortLabel HepG2 ZNF24 1\ subGroups cellType=HepG2 factor=ZNF24\ track encTfChipPkENCFF904QAD\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse 0 462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse 1 462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep2.CNhs13839.13437-144E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep2_CNhs13839_13437-144E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13437-144E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep2_CNhs13839_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13437-144E8\ urlLabel FANTOM5 Details:\ ENCFF816IIS ENCFF816IIS bigWig A673: (2) DNase, ENCFF816IIS 2 463 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF816IIS.bw\ color 6,218,147\ longLabel A673: (2) DNase, ENCFF816IIS\ maxHeightPixels 30\ parent DNase_view off\ priority 1.1\ shortLabel ENCFF816IIS\ subGroups organ=muscle view=DNase_view simpleBiosample=A673 biosampleType=cell_line donor=ENCDO027VXA dataType=typeDNase\ track ENCFF816IIS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF226BTJ ENCSR000BRR Peak bigBed 5 K562 STAT5A peaks 4 463 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/c37f1c3e-45af-4c40-9009-d3a586f1f15b/ENCFF226BTJ.bigBed\ labelFields none\ longLabel K562 STAT5A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF226BTJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF466KLK ENCSR000ELG Signal bigWig Naive B cell DNase signal 2 463 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/30dec8d3-b4b9-4d11-9327-58b7c78ac935/ENCFF466KLK.bigWig\ color 6,218,147\ longLabel Naive B cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELG Signal\ track wgEncodeReg4Epigenetics_ENCFF466KLK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF435USS ENCSR398REC + strand bigWig Activated B cell male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours + strand total RNA-seq signal 2 463 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/46b5aaf0-7301-44e7-b516-0fbced33bd12/ENCFF435USS.bigWig\ color 254,75,173\ longLabel Activated B cell male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR398REC + strand\ track wgEncodeReg4RnaSeq_ENCFF435USS\ type bigWig\ visibility full\ encTfChipPkENCFF858WPR HepG2 ZNF24 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF858WPR) 0 463 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in HepG2 from ENCODE 3 (ENCFF858WPR)\ parent encTfChipPk off\ shortLabel HepG2 ZNF24 2\ subGroups cellType=HepG2 factor=ZNF24\ track encTfChipPkENCFF858WPR\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward 0 463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day00R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward 1 463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ ENCFF648XPS ENCFF648XPS bigWig Cardiac muscle cell, embryo: (2) DNase, ENCFF648XPS 2 464 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF648XPS.bw\ color 6,218,147\ longLabel Cardiac muscle cell, embryo: (2) DNase, ENCFF648XPS\ maxHeightPixels 30\ parent DNase_view off\ priority 19.1\ shortLabel ENCFF648XPS\ subGroups organ=muscle view=DNase_view simpleBiosample=cardiac_muscle_cell-_embryo biosampleType=in_vitro_differentiated_cells donor=ENCDO924HBJ dataType=typeDNase\ track ENCFF648XPS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF171KLX ENCSR000BRR Signal bigWig K562 STAT5A ENCSR000BRR signal 2 464 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a6bbee61-bb1f-458d-b358-3ce331afa75c/ENCFF171KLX.bigWig\ color 254,75,173\ longLabel K562 STAT5A ENCSR000BRR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRR Signal\ track wgEncodeReg4TfChip_ENCFF171KLX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF922LSG ENCSR000ELH Peak bigBed 5 Keratinocyte female DNase peak 4 464 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/92e3e274-c034-4e5c-9661-17de474138f2/ENCFF922LSG.bigBed\ color 6,218,147\ labelFields none\ longLabel Keratinocyte female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELH Peak\ track wgEncodeReg4Epigenetics_ENCFF922LSG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF415LOT ENCSR398REC - strand bigWig Activated B cell male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours - strand total RNA-seq signal 2 464 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/acceb090-846a-4b18-8a35-0964c89ccdbf/ENCFF415LOT.bigWig\ color 254,75,173\ longLabel Activated B cell male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR398REC - strand\ track wgEncodeReg4RnaSeq_ENCFF415LOT\ type bigWig\ visibility full\ encTfChipPkENCFF482XNG HepG2 ZNF282 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF282 in HepG2 from ENCODE 3 (ENCFF482XNG) 0 464 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF282 in HepG2 from ENCODE 3 (ENCFF482XNG)\ parent encTfChipPk off\ shortLabel HepG2 ZNF282\ subGroups cellType=HepG2 factor=ZNF282\ track encTfChipPkENCFF482XNG\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse 0 464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_rev IpsToNeuronControlDnC11-CRL2429Day00R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse 1 464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day00%2c%20rep3.CNhs14052.13441-144F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day00, rep3_CNhs14052_13441-144F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13441-144F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day00R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day00Rep3_CNhs14052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13441-144F3\ urlLabel FANTOM5 Details:\ ENCFF103WUK ENCFF103WUK bigWig Gastrocnemius medialis, female adult (51 years): (2) DNase, ENCFF103WUK 2 465 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF103WUK.bw\ color 6,218,147\ longLabel Gastrocnemius medialis, female adult (51 years): (2) DNase, ENCFF103WUK\ maxHeightPixels 30\ parent DNase_view off\ priority 29.1\ shortLabel ENCFF103WUK\ subGroups organ=muscle view=DNase_view simpleBiosample=gastrocnemius_medialis-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF103WUK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF004YPK ENCSR000BRS Peak bigBed 5 K562 NR2F2 peaks 4 465 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/88a469bb-09b1-48b2-9da8-524b886bc05c/ENCFF004YPK.bigBed\ labelFields none\ longLabel K562 NR2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF004YPK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF839EGC ENCSR000ELH Signal bigWig Keratinocyte female DNase signal 2 465 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/db440c4d-0964-44a8-8533-e5b32c726d1c/ENCFF839EGC.bigWig\ color 6,218,147\ longLabel Keratinocyte female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELH Signal\ track wgEncodeReg4Epigenetics_ENCFF839EGC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF330EUN ENCSR401DHH + strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 465 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/b5ce3bc3-0453-4492-8bdc-acc96cabb845/ENCFF330EUN.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR401DHH + strand\ track wgEncodeReg4RnaSeq_ENCFF330EUN\ type bigWig\ visibility full\ encTfChipPkENCFF950VAR HepG2 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in HepG2 from ENCODE 3 (ENCFF950VAR) 0 465 85 198 255 170 226 255 0 0 0 regulation 1 color 85,198,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in HepG2 from ENCODE 3 (ENCFF950VAR)\ parent encTfChipPk off\ shortLabel HepG2 ZNF384\ subGroups cellType=HepG2 factor=ZNF384\ track encTfChipPkENCFF950VAR\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward 0 465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward 1 465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ ENCFF898XFY ENCFF898XFY bigWig Gastrocnemius medialis, male adult (54 years): (2) DNase, ENCFF898XFY 2 466 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF898XFY.bw\ color 6,218,147\ longLabel Gastrocnemius medialis, male adult (54 years): (2) DNase, ENCFF898XFY\ maxHeightPixels 30\ parent DNase_view off\ priority 32.1\ shortLabel ENCFF898XFY\ subGroups organ=muscle view=DNase_view simpleBiosample=gastrocnemius_medialis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF898XFY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF332WQF ENCSR000BRS Signal bigWig K562 NR2F2 ENCSR000BRS signal 2 466 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/3b9a9994-9b50-47a1-aaaa-b2af0cb129c7/ENCFF332WQF.bigWig\ color 254,75,173\ longLabel K562 NR2F2 ENCSR000BRS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRS Signal\ track wgEncodeReg4TfChip_ENCFF332WQF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF478PMN ENCSR000ELI Peak bigBed 5 C803 DNase peak 4 466 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/8b3b84b5-ac43-4cc4-8ead-40469d419106/ENCFF478PMN.bigBed\ color 6,218,147\ labelFields none\ longLabel C803 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELI Peak\ track wgEncodeReg4Epigenetics_ENCFF478PMN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF145SGH ENCSR401DHH - strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 466 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/4d22dd3e-a543-44e6-821c-34be59de174a/ENCFF145SGH.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR401DHH - strand\ track wgEncodeReg4RnaSeq_ENCFF145SGH\ type bigWig\ visibility full\ encTfChipPkENCFF567GON IMR-90 BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in IMR-90 from ENCODE 3 (ENCFF567GON) 0 466 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in IMR-90 from ENCODE 3 (ENCFF567GON)\ parent encTfChipPk off\ shortLabel IMR-90 BHLHE40\ subGroups cellType=IMR-90 factor=BHLHE40\ track encTfChipPkENCFF567GON\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse 0 466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse 1 466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep1.CNhs13827.13434-144E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep1_CNhs13827_13434-144E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13434-144E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep1_CNhs13827_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13434-144E5\ urlLabel FANTOM5 Details:\ ENCFF712ATQ ENCFF712ATQ bigWig Gastrocnemius medialis, female adult (53 years): (2) DNase, ENCFF712ATQ 2 467 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF712ATQ.bw\ color 6,218,147\ longLabel Gastrocnemius medialis, female adult (53 years): (2) DNase, ENCFF712ATQ\ maxHeightPixels 30\ parent DNase_view off\ priority 30.1\ shortLabel ENCFF712ATQ\ subGroups organ=muscle view=DNase_view simpleBiosample=gastrocnemius_medialis-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF712ATQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF410AQU ENCSR000BRT Peak bigBed 5 K562 CBX3 peaks 4 467 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e18fdca5-3fbf-4111-9250-c8125f6c28cf/ENCFF410AQU.bigBed\ labelFields none\ longLabel K562 CBX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF410AQU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF382IJE ENCSR000ELI Signal bigWig C803 DNase signal 2 467 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/1800fa32-a72e-433a-a0ab-d69262eb7e4e/ENCFF382IJE.bigWig\ color 6,218,147\ longLabel C803 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELI Signal\ track wgEncodeReg4Epigenetics_ENCFF382IJE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF807KQZ ENCSR403SZN + strand bigWig Transverse colon tissue female adult (51 years) + strand total RNA-seq signal 2 467 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6d6fe0cb-788c-41f8-a631-a99a42350831/ENCFF807KQZ.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR403SZN + strand\ track wgEncodeReg4RnaSeq_ENCFF807KQZ\ type bigWig\ visibility full\ encTfChipPkENCFF757KYL IMR-90 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in IMR-90 from ENCODE 3 (ENCFF757KYL) 0 467 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CEBPB in IMR-90 from ENCODE 3 (ENCFF757KYL)\ parent encTfChipPk off\ shortLabel IMR-90 CEBPB\ subGroups cellType=IMR-90 factor=CEBPB\ track encTfChipPkENCFF757KYL\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward 0 467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward 1 467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ ENCFF066BOK ENCFF066BOK bigWig Gastrocnemius medialis, male adult (37 years): (2) DNase, ENCFF066BOK 2 468 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF066BOK.bw\ color 6,218,147\ longLabel Gastrocnemius medialis, male adult (37 years): (2) DNase, ENCFF066BOK\ maxHeightPixels 30\ parent DNase_view off\ priority 31.1\ shortLabel ENCFF066BOK\ subGroups organ=muscle view=DNase_view simpleBiosample=gastrocnemius_medialis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF066BOK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF051QOQ ENCSR000BRT Signal bigWig K562 CBX3 ENCSR000BRT signal 2 468 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7e9682ae-3c78-471b-8a26-3f01c5566855/ENCFF051QOQ.bigWig\ color 254,75,173\ longLabel K562 CBX3 ENCSR000BRT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRT Signal\ track wgEncodeReg4TfChip_ENCFF051QOQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF732TAG ENCSR000ELJ Peak bigBed 5 Osteoblast DNase peak 4 468 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/77bd22ca-8707-47cd-88bb-36d079e08366/ENCFF732TAG.bigBed\ color 6,218,147\ labelFields none\ longLabel Osteoblast DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELJ Peak\ track wgEncodeReg4Epigenetics_ENCFF732TAG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF966BXX ENCSR403SZN - strand bigWig Transverse colon tissue female adult (51 years) - strand total RNA-seq signal 2 468 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/15/7aa876fe-bcfb-4170-bd7b-43dee4e5bae2/ENCFF966BXX.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR403SZN - strand\ track wgEncodeReg4RnaSeq_ENCFF966BXX\ type bigWig\ visibility full\ encTfChipPkENCFF510QXG IMR-90 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in IMR-90 from ENCODE 3 (ENCFF510QXG) 0 468 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CHD1 in IMR-90 from ENCODE 3 (ENCFF510QXG)\ parent encTfChipPk off\ shortLabel IMR-90 CHD1\ subGroups cellType=IMR-90 factor=CHD1\ track encTfChipPkENCFF510QXG\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse 0 468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse 1 468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep2.CNhs13840.13438-144E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep2_CNhs13840_13438-144E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13438-144E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep2_CNhs13840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13438-144E9\ urlLabel FANTOM5 Details:\ ENCFF886QYD ENCFF886QYD bigWig Esophagus muscularis mucosa, male adult (37 years): (2) DNase, ENCFF886QYD 2 469 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF886QYD.bw\ color 6,218,147\ longLabel Esophagus muscularis mucosa, male adult (37 years): (2) DNase, ENCFF886QYD\ maxHeightPixels 30\ parent DNase_view off\ priority 27.1\ shortLabel ENCFF886QYD\ subGroups organ=muscle view=DNase_view simpleBiosample=esophagus_muscularis_mucosa-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF886QYD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF264DJE ENCSR000BRU Peak bigBed 5 GM12878 FOXM1 peaks 4 469 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/94d01e35-dbcf-407b-8d99-cf011591f0cd/ENCFF264DJE.bigBed\ labelFields none\ longLabel GM12878 FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF264DJE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF418OBI ENCSR000ELJ Signal bigWig Osteoblast DNase signal 2 469 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/07fc8c4e-5378-4227-9b2c-05432fc6ef08/ENCFF418OBI.bigWig\ color 6,218,147\ longLabel Osteoblast DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELJ Signal\ track wgEncodeReg4Epigenetics_ENCFF418OBI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF493OET ENCSR406SAW + strand bigWig Upper lobe of left lung tissue female adult (53 years) + strand total RNA-seq signal 2 469 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f4a56964-cc50-46c8-aa26-a75d73d73189/ENCFF493OET.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR406SAW + strand\ track wgEncodeReg4RnaSeq_ENCFF493OET\ type bigWig\ visibility full\ encTfChipPkENCFF307XFM IMR-90 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in IMR-90 from ENCODE 3 (ENCFF307XFM) 0 469 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in IMR-90 from ENCODE 3 (ENCFF307XFM)\ parent encTfChipPk off\ shortLabel IMR-90 CTCF\ subGroups cellType=IMR-90 factor=CTCF\ track encTfChipPkENCFF307XFM\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward 0 469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day06R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward 1 469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ ENCFF639UGW ENCFF639UGW bigWig Tibial nerve, female adult (51 years): (2) DNase, ENCFF639UGW 2 470 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF639UGW.bw\ color 6,218,147\ longLabel Tibial nerve, female adult (51 years): (2) DNase, ENCFF639UGW\ maxHeightPixels 30\ parent DNase_view off\ priority 155.1\ shortLabel ENCFF639UGW\ subGroups organ=nerve view=DNase_view simpleBiosample=tibial_nerve-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF639UGW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF891YKE ENCSR000BRU Signal bigWig GM12878 FOXM1 ENCSR000BRU signal 2 470 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/33b2e7a9-a3a4-4e3d-934b-066cb143412d/ENCFF891YKE.bigWig\ color 254,75,173\ longLabel GM12878 FOXM1 ENCSR000BRU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRU Signal\ track wgEncodeReg4TfChip_ENCFF891YKE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF707ETN ENCSR000ELO Peak bigBed 5 Psoas muscle tissue male adult 27 years and male adult 35 years DNase peak 4 470 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/eeb4eb7f-3548-4920-b5bf-5bd9f047b9af/ENCFF707ETN.bigBed\ color 6,218,147\ labelFields none\ longLabel Psoas muscle tissue male adult 27 years and male adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELO Peak\ track wgEncodeReg4Epigenetics_ENCFF707ETN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF756MSA ENCSR406SAW - strand bigWig Upper lobe of left lung tissue female adult (53 years) - strand total RNA-seq signal 2 470 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/1a70b2c5-99f4-4501-8038-227d8c269971/ENCFF756MSA.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR406SAW - strand\ track wgEncodeReg4RnaSeq_ENCFF756MSA\ type bigWig\ visibility full\ encTfChipPkENCFF687IUD IMR-90 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in IMR-90 from ENCODE 3 (ENCFF687IUD) 0 470 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ELK1 in IMR-90 from ENCODE 3 (ENCFF687IUD)\ parent encTfChipPk off\ shortLabel IMR-90 ELK1\ subGroups cellType=IMR-90 factor=ELK1\ track encTfChipPkENCFF687IUD\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse 0 470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_rev IpsToNeuronControlDnC11-CRL2429Day06R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse 1 470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day06%2c%20rep3.CNhs14053.13442-144F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day06, rep3_CNhs14053_13442-144F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13442-144F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day06R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day06Rep3_CNhs14053_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13442-144F4\ urlLabel FANTOM5 Details:\ ENCFF798CZY ENCFF798CZY bigWig Tibial nerve, male adult (54 years): (2) DNase, ENCFF798CZY 2 471 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF798CZY.bw\ color 6,218,147\ longLabel Tibial nerve, male adult (54 years): (2) DNase, ENCFF798CZY\ maxHeightPixels 30\ parent DNase_view off\ priority 157.1\ shortLabel ENCFF798CZY\ subGroups organ=nerve view=DNase_view simpleBiosample=tibial_nerve-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF798CZY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF172UPN ENCSR000BRW Peak bigBed 5 K562 TRIM28 peaks 4 471 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/366b7f4c-3c1b-4c98-a93d-5a9f416e307c/ENCFF172UPN.bigBed\ labelFields none\ longLabel K562 TRIM28 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF172UPN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF961NBX ENCSR000ELO Signal bigWig Psoas muscle tissue male adult 27 years and male adult 35 years DNase signal 2 471 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/27e6f9b4-5566-4dd2-a58d-5f29647455b9/ENCFF961NBX.bigWig\ color 6,218,147\ longLabel Psoas muscle tissue male adult 27 years and male adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELO Signal\ track wgEncodeReg4Epigenetics_ENCFF961NBX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF251CIC ENCSR409UYW + strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 471 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/45456c4f-f8ae-409a-bbcc-fe2be720d182/ENCFF251CIC.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR409UYW + strand\ track wgEncodeReg4RnaSeq_ENCFF251CIC\ type bigWig\ visibility full\ encTfChipPkENCFF217ZMF IMR-90 FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in IMR-90 from ENCODE 3 (ENCFF217ZMF) 0 471 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in IMR-90 from ENCODE 3 (ENCFF217ZMF)\ parent encTfChipPk off\ shortLabel IMR-90 FOS\ subGroups cellType=IMR-90 factor=FOS\ track encTfChipPkENCFF217ZMF\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward 0 471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward 1 471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ ENCFF644VHX ENCFF644VHX bigWig Tibial nerve, male adult (37 years): (2) DNase, ENCFF644VHX 2 472 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF644VHX.bw\ color 6,218,147\ longLabel Tibial nerve, male adult (37 years): (2) DNase, ENCFF644VHX\ maxHeightPixels 30\ parent DNase_view off\ priority 156.1\ shortLabel ENCFF644VHX\ subGroups organ=nerve view=DNase_view simpleBiosample=tibial_nerve-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF644VHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF520JFI ENCSR000BRW Signal bigWig K562 TRIM28 ENCSR000BRW signal 2 472 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/10396ec0-193f-4cea-a03c-1d78aab728b5/ENCFF520JFI.bigWig\ color 254,75,173\ longLabel K562 TRIM28 ENCSR000BRW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRW Signal\ track wgEncodeReg4TfChip_ENCFF520JFI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF015OVK ENCSR000ELP Peak bigBed 5 RWPE1 DNase peak 4 472 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/34dd68b4-3589-4112-a5f5-fe2f3559e8be/ENCFF015OVK.bigBed\ color 6,218,147\ labelFields none\ longLabel RWPE1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELP Peak\ track wgEncodeReg4Epigenetics_ENCFF015OVK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF015CMN ENCSR409UYW - strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 472 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/5e01e553-bf2a-4ec1-8085-d4c11fae093b/ENCFF015CMN.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR409UYW - strand\ track wgEncodeReg4RnaSeq_ENCFF015CMN\ type bigWig\ visibility full\ encTfChipPkENCFF351VGZ IMR-90 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in IMR-90 from ENCODE 3 (ENCFF351VGZ) 0 472 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAFK in IMR-90 from ENCODE 3 (ENCFF351VGZ)\ parent encTfChipPk off\ shortLabel IMR-90 MAFK\ subGroups cellType=IMR-90 factor=MAFK\ track encTfChipPkENCFF351VGZ\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse 0 472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse 1 472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep1.CNhs13828.13435-144E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep1_CNhs13828_13435-144E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13435-144E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep1_CNhs13828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13435-144E6\ urlLabel FANTOM5 Details:\ ENCFF857RXA ENCFF857RXA bigWig Panc1: (2) DNase, ENCFF857RXA 2 473 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF857RXA.bw\ color 6,218,147\ longLabel Panc1: (2) DNase, ENCFF857RXA\ maxHeightPixels 30\ parent DNase_view off\ priority 120.1\ shortLabel ENCFF857RXA\ subGroups organ=pancreas view=DNase_view simpleBiosample=Panc1 biosampleType=cell_line donor=ENCDO000ABB dataType=typeDNase\ track ENCFF857RXA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF942VJF ENCSR000BRX Peak bigBed 5 GM12878 CEBPB peaks 4 473 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/81b23d4e-ab79-4f25-8c42-32e603b490aa/ENCFF942VJF.bigBed\ labelFields none\ longLabel GM12878 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF942VJF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF666AUK ENCSR000ELP Signal bigWig RWPE1 DNase signal 2 473 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/2c9d03db-504b-420d-9532-421729ca1c97/ENCFF666AUK.bigWig\ color 6,218,147\ longLabel RWPE1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELP Signal\ track wgEncodeReg4Epigenetics_ENCFF666AUK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF808KRP ENCSR410MSS + strand bigWig Left lung tissue female child (16 years) + strand total RNA-seq signal 2 473 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/0a266e14-50df-49d6-b2ea-37fca24d96c8/ENCFF808KRP.bigWig\ color 130,163,45\ longLabel Left lung tissue female child (16 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR410MSS + strand\ track wgEncodeReg4RnaSeq_ENCFF808KRP\ type bigWig\ visibility full\ encTfChipPkENCFF474PPT IMR-90 NFE2L2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2L2 in IMR-90 from ENCODE 3 (ENCFF474PPT) 0 473 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NFE2L2 in IMR-90 from ENCODE 3 (ENCFF474PPT)\ parent encTfChipPk off\ shortLabel IMR-90 NFE2L2\ subGroups cellType=IMR-90 factor=NFE2L2\ track encTfChipPkENCFF474PPT\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward 0 473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward 1 473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ ENCFF647HDA ENCFF647HDA bigWig Type B pancreatic cell, female embryo (5 days): (2) DNase, ENCFF647HDA 2 474 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF647HDA.bw\ color 6,218,147\ longLabel Type B pancreatic cell, female embryo (5 days): (2) DNase, ENCFF647HDA\ maxHeightPixels 30\ parent DNase_view off\ priority 162.1\ shortLabel ENCFF647HDA\ subGroups organ=pancreas view=DNase_view simpleBiosample=type_B_pancreatic_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF647HDA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF019EWO ENCSR000BRX Signal bigWig GM12878 CEBPB ENCSR000BRX signal 2 474 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f4f76f7a-5ce5-46ad-b56e-6bb78f20fca2/ENCFF019EWO.bigWig\ color 254,75,173\ longLabel GM12878 CEBPB ENCSR000BRX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRX Signal\ track wgEncodeReg4TfChip_ENCFF019EWO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF211DYP ENCSR000ELQ Peak bigBed 5 SK-N-SH DNase peak 4 474 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/822f9bfd-6feb-458b-92e3-eab988fa39d2/ENCFF211DYP.bigBed\ color 6,218,147\ labelFields none\ longLabel SK-N-SH DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELQ Peak\ track wgEncodeReg4Epigenetics_ENCFF211DYP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF629ZBA ENCSR410MSS - strand bigWig Left lung tissue female child (16 years) - strand total RNA-seq signal 2 474 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/4e338195-9b0a-437d-be99-556a11fb74f8/ENCFF629ZBA.bigWig\ color 130,163,45\ longLabel Left lung tissue female child (16 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR410MSS - strand\ track wgEncodeReg4RnaSeq_ENCFF629ZBA\ type bigWig\ visibility full\ encTfChipPkENCFF895JAW IMR-90 RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in IMR-90 from ENCODE 3 (ENCFF895JAW) 0 474 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in IMR-90 from ENCODE 3 (ENCFF895JAW)\ parent encTfChipPk off\ shortLabel IMR-90 RAD21\ subGroups cellType=IMR-90 factor=RAD21\ track encTfChipPkENCFF895JAW\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse 0 474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse 1 474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep2.CNhs13841.13439-144F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep2_CNhs13841_13439-144F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13439-144F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep2_CNhs13841_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13439-144F1\ urlLabel FANTOM5 Details:\ ENCFF865UWE ENCFF865UWE bigWig Progenitor cell of endocrine pancreas, female embryo (5 days): (2) DNase, ENCFF865UWE 2 475 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF865UWE.bw\ color 6,218,147\ longLabel Progenitor cell of endocrine pancreas, female embryo (5 days): (2) DNase, ENCFF865UWE\ maxHeightPixels 30\ parent DNase_view off\ priority 131.1\ shortLabel ENCFF865UWE\ subGroups organ=pancreas view=DNase_view simpleBiosample=progenitor_cell_of_endocrine_pancreas-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeDNase\ track ENCFF865UWE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF778PAX ENCSR000BRY Peak bigBed 5 H1 TEAD4 peaks 4 475 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/eb8b0903-5093-4149-8d3c-6cfa930c26aa/ENCFF778PAX.bigBed\ labelFields none\ longLabel H1 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF778PAX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF280RMA ENCSR000ELQ Signal bigWig SK-N-SH DNase signal 2 475 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/48a8516b-ede3-4f8e-a27b-59984e2567b8/ENCFF280RMA.bigWig\ color 6,218,147\ longLabel SK-N-SH DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELQ Signal\ track wgEncodeReg4Epigenetics_ENCFF280RMA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF515TIF ENCSR411MUF + strand bigWig CD4-positive, alpha-beta T cell male adult (20 years) + strand total RNA-seq signal 2 475 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/edd1b673-0862-4962-8e5d-e788bd151883/ENCFF515TIF.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta T cell male adult (20 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR411MUF + strand\ track wgEncodeReg4RnaSeq_ENCFF515TIF\ type bigWig\ visibility full\ encTfChipPkENCFF139EBY IMR-90 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in IMR-90 from ENCODE 3 (ENCFF139EBY) 0 475 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in IMR-90 from ENCODE 3 (ENCFF139EBY)\ parent encTfChipPk off\ shortLabel IMR-90 RCOR1\ subGroups cellType=IMR-90 factor=RCOR1\ track encTfChipPkENCFF139EBY\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward 0 475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day12R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward 1 475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ ENCFF213UEB ENCFF213UEB bigWig Pancreas, female adult (61 years): (2) DNase, ENCFF213UEB 2 476 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF213UEB.bw\ color 6,218,147\ longLabel Pancreas, female adult (61 years): (2) DNase, ENCFF213UEB\ maxHeightPixels 30\ parent DNase_view off\ priority 123.1\ shortLabel ENCFF213UEB\ subGroups organ=pancreas view=DNase_view simpleBiosample=pancreas-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeDNase\ track ENCFF213UEB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF307KTY ENCSR000BRY Signal bigWig H1 TEAD4 ENCSR000BRY signal 2 476 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/269797ff-8607-4ec3-909a-fa973e8fde9d/ENCFF307KTY.bigWig\ color 118,158,101\ longLabel H1 TEAD4 ENCSR000BRY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRY Signal\ track wgEncodeReg4TfChip_ENCFF307KTY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF722KHY ENCSR000ELR Peak bigBed 5 Hepatic stellate cell female adult 59 years DNase peak 4 476 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/3868e5f5-915a-4b94-8ed8-b61301d428ec/ENCFF722KHY.bigBed\ color 6,218,147\ labelFields none\ longLabel Hepatic stellate cell female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELR Peak\ track wgEncodeReg4Epigenetics_ENCFF722KHY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF232RTU ENCSR411MUF - strand bigWig CD4-positive, alpha-beta T cell male adult (20 years) - strand total RNA-seq signal 2 476 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/3c04fe58-aa6e-4916-b28c-99f4d0375211/ENCFF232RTU.bigWig\ color 254,75,173\ longLabel CD4-positive, alpha-beta T cell male adult (20 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR411MUF - strand\ track wgEncodeReg4RnaSeq_ENCFF232RTU\ type bigWig\ visibility full\ encTfChipPkENCFF380ZXB IMR-90 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in IMR-90 from ENCODE 3 (ENCFF380ZXB) 0 476 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMC3 in IMR-90 from ENCODE 3 (ENCFF380ZXB)\ parent encTfChipPk off\ shortLabel IMR-90 SMC3\ subGroups cellType=IMR-90 factor=SMC3\ track encTfChipPkENCFF380ZXB\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse 0 476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_rev IpsToNeuronControlDnC11-CRL2429Day12R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse 1 476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day12%2c%20rep3.CNhs14054.13443-144F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day12, rep3_CNhs14054_13443-144F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13443-144F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day12R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day12Rep3_CNhs14054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13443-144F5\ urlLabel FANTOM5 Details:\ ENCFF225DKL ENCFF225DKL bigWig Body of pancreas, female adult (51 years): (2) DNase, ENCFF225DKL 2 477 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF225DKL.bw\ color 6,218,147\ longLabel Body of pancreas, female adult (51 years): (2) DNase, ENCFF225DKL\ maxHeightPixels 30\ parent DNase_view off\ priority 13.1\ shortLabel ENCFF225DKL\ subGroups organ=pancreas view=DNase_view simpleBiosample=body_of_pancreas-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF225DKL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF456NPQ ENCSR000BRZ Peak bigBed 5 HCT116 EGR1 peaks 4 477 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/25a55f88-28e1-4d9f-aad5-b518bff19be1/ENCFF456NPQ.bigBed\ labelFields none\ longLabel HCT116 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF456NPQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF679SRM ENCSR000ELR Signal bigWig Hepatic stellate cell female adult 59 years DNase signal 2 477 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/20/af91e8d8-23cd-4122-be1f-ee3a3b295dd5/ENCFF679SRM.bigWig\ color 6,218,147\ longLabel Hepatic stellate cell female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELR Signal\ track wgEncodeReg4Epigenetics_ENCFF679SRM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF730QUO ENCSR413QAL + strand bigWig Osteocyte + strand total RNA-seq signal 2 477 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/ff7b7d5f-8ce9-47cd-9018-4abc59bdd209/ENCFF730QUO.bigWig\ color 121,147,150\ longLabel Osteocyte + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR413QAL + strand\ track wgEncodeReg4RnaSeq_ENCFF730QUO\ type bigWig\ visibility full\ encTfChipPkENCFF938BOJ IMR-90 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in IMR-90 from ENCODE 3 (ENCFF938BOJ) 0 477 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of USF2 in IMR-90 from ENCODE 3 (ENCFF938BOJ)\ parent encTfChipPk off\ shortLabel IMR-90 USF2\ subGroups cellType=IMR-90 factor=USF2\ track encTfChipPkENCFF938BOJ\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward 0 477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R1+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward 1 477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ ENCFF649PLC ENCFF649PLC bigWig Body of pancreas, male adult (54 years): (2) DNase, ENCFF649PLC 2 478 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF649PLC.bw\ color 6,218,147\ longLabel Body of pancreas, male adult (54 years): (2) DNase, ENCFF649PLC\ maxHeightPixels 30\ parent DNase_view off\ priority 15.1\ shortLabel ENCFF649PLC\ subGroups organ=pancreas view=DNase_view simpleBiosample=body_of_pancreas-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF649PLC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF329FHN ENCSR000BRZ Signal bigWig HCT116 EGR1 ENCSR000BRZ signal 2 478 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1e99c482-e17e-490a-883e-7b7cac166604/ENCFF329FHN.bigWig\ color 86,86,36\ longLabel HCT116 EGR1 ENCSR000BRZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BRZ Signal\ track wgEncodeReg4TfChip_ENCFF329FHN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF669QEC ENCSR000ELS Peak bigBed 5 T47D treated with 10 nM 17β-estradiol for 30 minutes DNase peak 4 478 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/6ee668e3-bf91-44eb-9526-15b75c7e38e2/ENCFF669QEC.bigBed\ color 6,218,147\ labelFields none\ longLabel T47D treated with 10 nM 17β-estradiol for 30 minutes DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELS Peak\ track wgEncodeReg4Epigenetics_ENCFF669QEC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF847KND ENCSR413QAL - strand bigWig Osteocyte - strand total RNA-seq signal 2 478 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/24c83c69-b619-47f3-92f7-6dd8843b26e0/ENCFF847KND.bigWig\ color 121,147,150\ longLabel Osteocyte - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR413QAL - strand\ track wgEncodeReg4RnaSeq_ENCFF847KND\ type bigWig\ visibility full\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse 0 478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R1- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse 1 478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep1.CNhs13829.13436-144E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep1_CNhs13829_13436-144E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13436-144E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R1-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep1_CNhs13829_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13436-144E7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF675JJV Ishikawa CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Ishikawa from ENCODE 3 (ENCFF675JJV) 0 478 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Ishikawa from ENCODE 3 (ENCFF675JJV)\ parent encTfChipPk off\ shortLabel Ishikawa CTCF\ subGroups cellType=Ishikawa factor=CTCF\ track encTfChipPkENCFF675JJV\ ENCFF349ZMO ENCFF349ZMO bigWig Pancreas, female child (16 years): (2) DNase, ENCFF349ZMO 2 479 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF349ZMO.bw\ color 6,218,147\ longLabel Pancreas, female child (16 years): (2) DNase, ENCFF349ZMO\ maxHeightPixels 30\ parent DNase_view off\ priority 124.1\ shortLabel ENCFF349ZMO\ subGroups organ=pancreas view=DNase_view simpleBiosample=pancreas-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeDNase\ track ENCFF349ZMO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF748ZQX ENCSR000BSA Peak bigBed 5 HCT116 JUND peaks 4 479 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/da25f566-89d7-4ba1-bd2f-265e651a0434/ENCFF748ZQX.bigBed\ labelFields none\ longLabel HCT116 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF748ZQX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF555CJR ENCSR000ELS Signal bigWig T47D treated with 10 nM 17β-estradiol for 30 minutes DNase signal 2 479 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/303ea520-ecf9-400f-a0c7-e5284d2f3656/ENCFF555CJR.bigWig\ color 6,218,147\ longLabel T47D treated with 10 nM 17β-estradiol for 30 minutes DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELS Signal\ track wgEncodeReg4Epigenetics_ENCFF555CJR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF474MDU ENCSR415SXI + strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 479 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/89f6319b-7bdc-4787-a8a1-72d5010800a4/ENCFF474MDU.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR415SXI + strand\ track wgEncodeReg4RnaSeq_ENCFF474MDU\ type bigWig\ visibility full\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward 0 479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R2+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward 1 479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF076OFH Ishikawa ESR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF076OFH) 0 479 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF076OFH)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 1\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF076OFH\ ENCFF330ZGD ENCFF330ZGD bigWig Pancreas, female adult (41 years): (2) DNase, ENCFF330ZGD 2 480 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF330ZGD.bw\ color 6,218,147\ longLabel Pancreas, female adult (41 years): (2) DNase, ENCFF330ZGD\ maxHeightPixels 30\ parent DNase_view off\ priority 121.1\ shortLabel ENCFF330ZGD\ subGroups organ=pancreas view=DNase_view simpleBiosample=pancreas-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeDNase\ track ENCFF330ZGD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF647MFN ENCSR000BSA Signal bigWig HCT116 JUND ENCSR000BSA signal 2 480 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ecd902e4-0286-4ea4-ae3a-3cf4080273ce/ENCFF647MFN.bigWig\ color 86,86,36\ longLabel HCT116 JUND ENCSR000BSA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSA Signal\ track wgEncodeReg4TfChip_ENCFF647MFN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF914JKF ENCSR000ELU Peak bigBed 5 Urothelium cell line treated with UT189 for 1 hour DNase peak 4 480 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/b1b27c2d-e34b-4ee6-90e6-14352ec8daf0/ENCFF914JKF.bigBed\ color 6,218,147\ labelFields none\ longLabel Urothelium cell line treated with UT189 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELU Peak\ track wgEncodeReg4Epigenetics_ENCFF914JKF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF610UVF ENCSR415SXI - strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 480 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/a2234ad2-e3e0-4434-86bb-34c1f62d2bac/ENCFF610UVF.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR415SXI - strand\ track wgEncodeReg4RnaSeq_ENCFF610UVF\ type bigWig\ visibility full\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse 0 480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R2- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse 1 480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep2.CNhs13842.13440-144F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep2_CNhs13842_13440-144F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13440-144F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R2-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep2_CNhs13842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13440-144F2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF279JGE Ishikawa ESR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF279JGE) 0 480 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF279JGE)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 2\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF279JGE\ ENCFF087WEP ENCFF087WEP bigWig Body of pancreas, male adult (37 years): (2) DNase, ENCFF087WEP 2 481 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF087WEP.bw\ color 6,218,147\ longLabel Body of pancreas, male adult (37 years): (2) DNase, ENCFF087WEP\ maxHeightPixels 30\ parent DNase_view off\ priority 14.1\ shortLabel ENCFF087WEP\ subGroups organ=pancreas view=DNase_view simpleBiosample=body_of_pancreas-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF087WEP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF568PEO ENCSR000BSB Peak bigBed 5 HCT116 RAD21 peaks 4 481 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/d745e4e6-5016-43d3-b6a4-0b726cc6f07b/ENCFF568PEO.bigBed\ labelFields none\ longLabel HCT116 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF568PEO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF692BTV ENCSR000ELU Signal bigWig Urothelium cell line treated with UT189 for 1 hour DNase signal 2 481 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/82266ff7-b661-45f7-98f2-365d82494261/ENCFF692BTV.bigWig\ color 6,218,147\ longLabel Urothelium cell line treated with UT189 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELU Signal\ track wgEncodeReg4Epigenetics_ENCFF692BTV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF610PWN ENCSR418WMG + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years) + strand total RNA-seq signal 2 481 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/0c946d63-83be-4c3b-96da-be0fdbe7f6e0/ENCFF610PWN.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR418WMG + strand\ track wgEncodeReg4RnaSeq_ENCFF610PWN\ type bigWig\ visibility full\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward 0 481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_fwd IpsToNeuronControlDnC11-CRL2429Day18R3+ bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward 1 481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3+\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=forward\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF778BLL Ishikawa ESR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF778BLL) 0 481 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in Ishikawa from ENCODE 3 (ENCFF778BLL)\ parent encTfChipPk off\ shortLabel Ishikawa ESR1 3\ subGroups cellType=Ishikawa factor=ESR1\ track encTfChipPkENCFF778BLL\ ENCFF876OBV ENCFF876OBV bigWig Pancreas, female adult (59 years): (2) DNase, ENCFF876OBV 2 482 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF876OBV.bw\ color 6,218,147\ longLabel Pancreas, female adult (59 years): (2) DNase, ENCFF876OBV\ maxHeightPixels 30\ parent DNase_view off\ priority 122.1\ shortLabel ENCFF876OBV\ subGroups organ=pancreas view=DNase_view simpleBiosample=pancreas-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeDNase\ track ENCFF876OBV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF776IXR ENCSR000BSB Signal bigWig HCT116 RAD21 ENCSR000BSB signal 2 482 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/065202f3-43c3-4471-b3d8-707ec127dd1a/ENCFF776IXR.bigWig\ color 86,86,36\ longLabel HCT116 RAD21 ENCSR000BSB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSB Signal\ track wgEncodeReg4TfChip_ENCFF776IXR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF948EFE ENCSR000ELV Peak bigBed 5 Urothelium cell line DNase peak 4 482 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/44ceb160-6455-435e-85b1-e4ac6acbf00c/ENCFF948EFE.bigBed\ color 6,218,147\ labelFields none\ longLabel Urothelium cell line DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELV Peak\ track wgEncodeReg4Epigenetics_ENCFF948EFE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF959YYD ENCSR418WMG - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years) - strand total RNA-seq signal 2 482 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/b484712a-ef5c-4c16-9142-aeff5e635203/ENCFF959YYD.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR418WMG - strand\ track wgEncodeReg4RnaSeq_ENCFF959YYD\ type bigWig\ visibility full\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse 0 482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_rev IpsToNeuronControlDnC11-CRL2429Day18R3- bigWig iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse 1 482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/iPS%20differentiation%20to%20neuron%2c%20control%20donor%20C32-CRL1502%2c%20day18%2c%20rep3.CNhs14055.13444-144F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel iPS differentiation to neuron, control donor C32-CRL1502, day18, rep3_CNhs14055_13444-144F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13444-144F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IpsToNeuronControlDnC11-CRL2429Day18R3-\ subGroups sequenceTech=hCAGE category=Human_iPS_to_neuron_wt_2 strand=reverse\ track IPSDifferentiationToNeuronControlDonorC32CRL1502Day18Rep3_CNhs14055_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13444-144F6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF519BOO Ishikawa NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF519BOO) 0 482 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF519BOO)\ parent encTfChipPk off\ shortLabel Ishikawa NR3C1 1\ subGroups cellType=Ishikawa factor=NR3C1\ track encTfChipPkENCFF519BOO\ ENCFF623ZIV ENCFF623ZIV bigWig HFFc6: (2) DNase, ENCFF623ZIV 2 483 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF623ZIV.bw\ color 6,218,147\ longLabel HFFc6: (2) DNase, ENCFF623ZIV\ maxHeightPixels 30\ parent DNase_view off\ priority 55.1\ shortLabel ENCFF623ZIV\ subGroups organ=penis view=DNase_view simpleBiosample=HFFc6 biosampleType=cell_line donor=ENCDO737WWC dataType=typeDNase\ track ENCFF623ZIV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF497JOF ENCSR000BSC Peak bigBed 5 HCT116 SRF peaks 4 483 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4e6b2fe8-38e8-450e-bbc7-c53264f1936e/ENCFF497JOF.bigBed\ labelFields none\ longLabel HCT116 SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF497JOF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF937YXE ENCSR000ELV Signal bigWig Urothelium cell line DNase signal 2 483 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/22/0359439e-df9e-4ed4-9f3f-8a7b39a4c679/ENCFF937YXE.bigWig\ color 6,218,147\ longLabel Urothelium cell line DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELV Signal\ track wgEncodeReg4Epigenetics_ENCFF937YXE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF506BHU ENCSR420NLC + strand bigWig PC-3 + strand total RNA-seq signal 2 483 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/40674a1c-aa9b-4bf8-8512-8f0cf40bfc54/ENCFF506BHU.bigWig\ color 140,140,140\ longLabel PC-3 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR420NLC + strand\ track wgEncodeReg4RnaSeq_ENCFF506BHU\ type bigWig\ visibility full\ encTfChipPkENCFF293OHT Ishikawa NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF293OHT) 0 483 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in Ishikawa from ENCODE 3 (ENCFF293OHT)\ parent encTfChipPk off\ shortLabel Ishikawa NR3C1 2\ subGroups cellType=Ishikawa factor=NR3C1\ track encTfChipPkENCFF293OHT\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward 0 483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward 1 483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ ENCFF599UKS ENCFF599UKS bigWig PC-3: (2) DNase, ENCFF599UKS 2 484 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF599UKS.bw\ color 6,218,147\ longLabel PC-3: (2) DNase, ENCFF599UKS\ maxHeightPixels 30\ parent DNase_view off\ priority 125.1\ shortLabel ENCFF599UKS\ subGroups organ=prostate view=DNase_view simpleBiosample=PC-3 biosampleType=cell_line donor=ENCDO349AAA dataType=typeDNase\ track ENCFF599UKS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF449SAT ENCSR000BSC Signal bigWig HCT116 SRF ENCSR000BSC signal 2 484 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/27cf0da7-739f-4d82-983c-dc7062259639/ENCFF449SAT.bigWig\ color 86,86,36\ longLabel HCT116 SRF ENCSR000BSC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSC Signal\ track wgEncodeReg4TfChip_ENCFF449SAT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF807KKL ENCSR000ELW Peak bigBed 5 A549 DNase peak 4 484 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/59e05999-8e27-4f60-a362-e878c424b7b5/ENCFF807KKL.bigBed\ color 6,218,147\ labelFields none\ longLabel A549 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELW Peak\ track wgEncodeReg4Epigenetics_ENCFF807KKL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF467LTN ENCSR420NLC - strand bigWig PC-3 - strand total RNA-seq signal 2 484 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/ca34bd42-6b31-4214-a85b-0c024fcb2de5/ENCFF467LTN.bigWig\ color 140,140,140\ longLabel PC-3 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR420NLC - strand\ track wgEncodeReg4RnaSeq_ENCFF467LTN\ type bigWig\ visibility full\ encTfChipPkENCFF085HJD Ishikawa POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Ishikawa from ENCODE 3 (ENCFF085HJD) 0 484 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Ishikawa from ENCODE 3 (ENCFF085HJD)\ parent encTfChipPk off\ shortLabel Ishikawa POLR2A\ subGroups cellType=Ishikawa factor=POLR2A\ track encTfChipPkENCFF085HJD\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse 0 484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse 1 484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%201%29.CNhs11936.12260-130A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep1 (MM XIX - 1)_CNhs11936_12260-130A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12260-130A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep1MMXIX1_CNhs11936_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12260-130A1\ urlLabel FANTOM5 Details:\ ENCFF865IXT ENCFF865IXT bigWig Prostate gland, male adult (37 years): (2) DNase, ENCFF865IXT 2 485 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF865IXT.bw\ color 6,218,147\ longLabel Prostate gland, male adult (37 years): (2) DNase, ENCFF865IXT\ maxHeightPixels 30\ parent DNase_view off\ priority 132.1\ shortLabel ENCFF865IXT\ subGroups organ=prostate view=DNase_view simpleBiosample=prostate_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF865IXT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF097OLY ENCSR000BSD Peak bigBed 5 HCT116 CEBPB peaks 4 485 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/047fd987-6c24-4ae3-8ff5-3f03349782d8/ENCFF097OLY.bigBed\ labelFields none\ longLabel HCT116 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF097OLY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF985FHV ENCSR000ELW Signal bigWig A549 DNase signal 2 485 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/15274c25-adc2-4634-acbc-c5e9aabfc62d/ENCFF985FHV.bigWig\ color 6,218,147\ longLabel A549 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELW Signal\ track wgEncodeReg4Epigenetics_ENCFF985FHV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF581PRF ENCSR420YFF + strand bigWig Placenta tissue female embryo + strand total RNA-seq signal 2 485 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/506bfb3a-a2a4-449b-b991-8d823e08189e/ENCFF581PRF.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR420YFF + strand\ track wgEncodeReg4RnaSeq_ENCFF581PRF\ type bigWig\ visibility full\ encTfChipPkENCFF869BYK K562 AFF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF869BYK) 0 485 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF869BYK)\ parent encTfChipPk off\ shortLabel K562 AFF1 1\ subGroups cellType=K562 factor=AFF1\ track encTfChipPkENCFF869BYK\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward 0 485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward 1 485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ ENCFF241UWA ENCFF241UWA bigWig GM23338: (2) DNase, ENCFF241UWA 2 486 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF241UWA.bw\ color 6,218,147\ longLabel GM23338: (2) DNase, ENCFF241UWA\ maxHeightPixels 30\ parent DNase_view off\ priority 36.1\ shortLabel ENCFF241UWA\ subGroups organ=skin view=DNase_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeDNase\ track ENCFF241UWA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF705PPP ENCSR000BSD Signal bigWig HCT116 CEBPB ENCSR000BSD signal 2 486 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/0f143da5-361a-4006-97d4-90ac16298b90/ENCFF705PPP.bigWig\ color 86,86,36\ longLabel HCT116 CEBPB ENCSR000BSD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSD Signal\ track wgEncodeReg4TfChip_ENCFF705PPP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF612ULV ENCSR000ELX Peak bigBed 5 AG04449 DNase peak 4 486 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/24b37f24-6c18-4e73-ad26-a1b02afaaef2/ENCFF612ULV.bigBed\ color 6,218,147\ labelFields none\ longLabel AG04449 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELX Peak\ track wgEncodeReg4Epigenetics_ENCFF612ULV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF684QVX ENCSR420YFF - strand bigWig Placenta tissue female embryo - strand total RNA-seq signal 2 486 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/0ba6137a-9a41-4399-8d11-d9ba0289d2a6/ENCFF684QVX.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR420YFF - strand\ track wgEncodeReg4RnaSeq_ENCFF684QVX\ type bigWig\ visibility full\ encTfChipPkENCFF489SKQ K562 AFF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF489SKQ) 0 486 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of AFF1 in K562 from ENCODE 3 (ENCFF489SKQ)\ parent encTfChipPk off\ shortLabel K562 AFF1 2\ subGroups cellType=K562 factor=AFF1\ track encTfChipPkENCFF489SKQ\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse 0 486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse 1 486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%201%29.CNhs13157.12382-131E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep2 (MM XIV - 1)_CNhs13157_12382-131E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12382-131E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep2MMXIV1_CNhs13157_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12382-131E6\ urlLabel FANTOM5 Details:\ ENCFF766CUM ENCFF766CUM bigWig GM23338: (2) DNase, ENCFF766CUM 2 487 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF766CUM.bw\ color 6,218,147\ longLabel GM23338: (2) DNase, ENCFF766CUM\ maxHeightPixels 30\ parent DNase_view off\ priority 35.1\ shortLabel ENCFF766CUM\ subGroups organ=skin view=DNase_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeDNase\ track ENCFF766CUM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF373YMA ENCSR000BSE Peak bigBed 5 HCT116 CTCF peaks 4 487 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ae21e712-06c9-4903-bc11-45e2c60793eb/ENCFF373YMA.bigBed\ labelFields none\ longLabel HCT116 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF373YMA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF733AUS ENCSR000ELX Signal bigWig AG04449 DNase signal 2 487 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/5af5f8cb-46aa-4df4-8611-554a1b191b12/ENCFF733AUS.bigWig\ color 6,218,147\ longLabel AG04449 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELX Signal\ track wgEncodeReg4Epigenetics_ENCFF733AUS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF948GWD ENCSR420ZKB + strand bigWig HFFc6 + strand total RNA-seq signal 2 487 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/b7a6181b-aa89-462e-9765-63836d3db05f/ENCFF948GWD.bigWig\ color 20,74,159\ longLabel HFFc6 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR420ZKB + strand\ track wgEncodeReg4RnaSeq_ENCFF948GWD\ type bigWig\ visibility full\ encTfChipPkENCFF100VYA K562 AGO1 narrowPeak Transcription Factor ChIP-seq Peaks of AGO1 in K562 from ENCODE 3 (ENCFF100VYA) 0 487 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of AGO1 in K562 from ENCODE 3 (ENCFF100VYA)\ parent encTfChipPk off\ shortLabel K562 AGO1\ subGroups cellType=K562 factor=AGO1\ track encTfChipPkENCFF100VYA\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward 0 487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward 1 487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ ENCFF494IGD ENCFF494IGD bigWig Keratinocyte, female: (2) DNase, ENCFF494IGD 2 488 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF494IGD.bw\ color 6,218,147\ longLabel Keratinocyte, female: (2) DNase, ENCFF494IGD\ maxHeightPixels 30\ parent DNase_view off\ priority 59.1\ shortLabel ENCFF494IGD\ subGroups organ=skin view=DNase_view simpleBiosample=keratinocyte-_female biosampleType=primary_cell donor=ENCDO268AAA dataType=typeDNase\ track ENCFF494IGD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF626CDS ENCSR000BSE Signal bigWig HCT116 CTCF ENCSR000BSE signal 2 488 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ce48a9dc-532d-4fa1-87c1-8821731adf33/ENCFF626CDS.bigWig\ color 86,86,36\ longLabel HCT116 CTCF ENCSR000BSE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSE Signal\ track wgEncodeReg4TfChip_ENCFF626CDS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF912GAK ENCSR000ELY Peak bigBed 5 AG04450 DNase peak 4 488 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/0c2268ae-fe44-4b8a-8ec7-c5bf75ae45a3/ENCFF912GAK.bigBed\ color 6,218,147\ labelFields none\ longLabel AG04450 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELY Peak\ track wgEncodeReg4Epigenetics_ENCFF912GAK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF098CDA ENCSR420ZKB - strand bigWig HFFc6 - strand total RNA-seq signal 2 488 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/f306b01d-4062-437e-bca1-749807614f12/ENCFF098CDA.bigWig\ color 20,74,159\ longLabel HFFc6 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR420ZKB - strand\ track wgEncodeReg4RnaSeq_ENCFF098CDA\ type bigWig\ visibility full\ encTfChipPkENCFF089PKE K562 ARHGAP35 narrowPeak Transcription Factor ChIP-seq Peaks of ARHGAP35 in K562 from ENCODE 3 (ENCFF089PKE) 0 488 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARHGAP35 in K562 from ENCODE 3 (ENCFF089PKE)\ parent encTfChipPk off\ shortLabel K562 ARHGAP35\ subGroups cellType=K562 factor=ARHGAP35\ track encTfChipPkENCFF089PKE\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_rev LymphaticEndothelialCellsToVegfc_00hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse 0 488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_rev LymphaticEndothelialCellsToVegfc_00hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse 1 488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%201%20%29.CNhs13276.12504-133A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr00min, biol_rep3 (MM XXII - 1 )_CNhs13276_12504-133A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12504-133A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr00minBiolRep3MMXXII1_CNhs13276_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12504-133A2\ urlLabel FANTOM5 Details:\ ENCFF241BCT ENCFF241BCT bigWig Peyers patch, female adult (51 years): (2) DNase, ENCFF241BCT 2 489 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF241BCT.bw\ color 6,218,147\ longLabel Peyers patch, female adult (51 years): (2) DNase, ENCFF241BCT\ maxHeightPixels 30\ parent DNase_view off\ priority 127.1\ shortLabel ENCFF241BCT\ subGroups organ=small_intestine view=DNase_view simpleBiosample=Peyers_patch-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF241BCT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF800LBN ENCSR000BSF Peak bigBed 5 HCT116 SP1 peaks 4 489 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5cfaecf2-b6d6-4d04-9d83-fead0aaeddef/ENCFF800LBN.bigBed\ labelFields none\ longLabel HCT116 SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF800LBN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF153DHV ENCSR000ELY Signal bigWig AG04450 DNase signal 2 489 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/d21bb33e-59d6-41ed-8fa2-8f72d7c02a72/ENCFF153DHV.bigWig\ color 6,218,147\ longLabel AG04450 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELY Signal\ track wgEncodeReg4Epigenetics_ENCFF153DHV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF520NHF ENCSR425RGZ + strand bigWig Upper lobe of left lung tissue female adult (51 years) + strand total RNA-seq signal 2 489 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/c780ad3d-42ad-43a3-82e4-faa6aa1bdd31/ENCFF520NHF.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR425RGZ + strand\ track wgEncodeReg4RnaSeq_ENCFF520NHF\ type bigWig\ visibility full\ encTfChipPkENCFF249TYS K562 ARID1B narrowPeak Transcription Factor ChIP-seq Peaks of ARID1B in K562 from ENCODE 3 (ENCFF249TYS) 0 489 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARID1B in K562 from ENCODE 3 (ENCFF249TYS)\ parent encTfChipPk off\ shortLabel K562 ARID1B\ subGroups cellType=K562 factor=ARID1B\ track encTfChipPkENCFF249TYS\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward 0 489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward 1 489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ ENCFF717OQE ENCFF717OQE bigWig Peyers patch, male adult (54 years): (2) DNase, ENCFF717OQE 2 490 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF717OQE.bw\ color 6,218,147\ longLabel Peyers patch, male adult (54 years): (2) DNase, ENCFF717OQE\ maxHeightPixels 30\ parent DNase_view off\ priority 130.1\ shortLabel ENCFF717OQE\ subGroups organ=small_intestine view=DNase_view simpleBiosample=Peyers_patch-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF717OQE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF205TXT ENCSR000BSF Signal bigWig HCT116 SP1 ENCSR000BSF signal 2 490 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5603e0a5-9a09-470b-a1ac-1155b7bd6903/ENCFF205TXT.bigWig\ color 86,86,36\ longLabel HCT116 SP1 ENCSR000BSF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSF Signal\ track wgEncodeReg4TfChip_ENCFF205TXT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF559GMJ ENCSR000ELZ Peak bigBed 5 AG09309 DNase peak 4 490 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/49b9449d-5eee-45cb-9ac4-7738029b3bfc/ENCFF559GMJ.bigBed\ color 6,218,147\ labelFields none\ longLabel AG09309 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELZ Peak\ track wgEncodeReg4Epigenetics_ENCFF559GMJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF780JCL ENCSR425RGZ - strand bigWig Upper lobe of left lung tissue female adult (51 years) - strand total RNA-seq signal 2 490 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/a9441a63-0ff1-4dc9-a0ca-1a13d17feea8/ENCFF780JCL.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR425RGZ - strand\ track wgEncodeReg4RnaSeq_ENCFF780JCL\ type bigWig\ visibility full\ encTfChipPkENCFF344MKI K562 ARID2 narrowPeak Transcription Factor ChIP-seq Peaks of ARID2 in K562 from ENCODE 3 (ENCFF344MKI) 0 490 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARID2 in K562 from ENCODE 3 (ENCFF344MKI)\ parent encTfChipPk off\ shortLabel K562 ARID2\ subGroups cellType=K562 factor=ARID2\ track encTfChipPkENCFF344MKI\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse 0 490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse 1 490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep1%20%28MM%20XIX%20-%202%29.CNhs13100.12261-130A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep1 (MM XIX - 2)_CNhs13100_12261-130A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12261-130A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep1MMXIX2_CNhs13100_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12261-130A2\ urlLabel FANTOM5 Details:\ ENCFF812JCQ ENCFF812JCQ bigWig Peyers patch, female adult (53 years): (2) DNase, ENCFF812JCQ 2 491 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF812JCQ.bw\ color 6,218,147\ longLabel Peyers patch, female adult (53 years): (2) DNase, ENCFF812JCQ\ maxHeightPixels 30\ parent DNase_view off\ priority 128.1\ shortLabel ENCFF812JCQ\ subGroups organ=small_intestine view=DNase_view simpleBiosample=Peyers_patch-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF812JCQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF203YBB ENCSR000BSG Peak bigBed 5 HCT116 SIN3A peaks 4 491 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/d638979a-56ba-4c4e-bab2-097784b3d216/ENCFF203YBB.bigBed\ labelFields none\ longLabel HCT116 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF203YBB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF786SQQ ENCSR000ELZ Signal bigWig AG09309 DNase signal 2 491 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/08f1e9de-4424-42c6-b8b8-a684bba45b32/ENCFF786SQQ.bigWig\ color 6,218,147\ longLabel AG09309 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ELZ Signal\ track wgEncodeReg4Epigenetics_ENCFF786SQQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF950PCD ENCSR429EGC + strand bigWig Endothelial cell + strand total RNA-seq signal 2 491 221 126 107 238 190 181 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/9cfbd8a6-8671-4791-8c7f-1789e1b7cfb4/ENCFF950PCD.bigWig\ color 221,126,107\ longLabel Endothelial cell + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR429EGC + strand\ track wgEncodeReg4RnaSeq_ENCFF950PCD\ type bigWig\ visibility full\ encTfChipPkENCFF757OML K562 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in K562 from ENCODE 3 (ENCFF757OML) 0 491 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in K562 from ENCODE 3 (ENCFF757OML)\ parent encTfChipPk off\ shortLabel K562 ARID3A\ subGroups cellType=K562 factor=ARID3A\ track encTfChipPkENCFF757OML\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward 0 491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward 1 491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ ENCFF926IJX ENCFF926IJX bigWig Peyers patch, male adult (37 years): (2) DNase, ENCFF926IJX 2 492 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF926IJX.bw\ color 6,218,147\ longLabel Peyers patch, male adult (37 years): (2) DNase, ENCFF926IJX\ maxHeightPixels 30\ parent DNase_view off\ priority 129.1\ shortLabel ENCFF926IJX\ subGroups organ=small_intestine view=DNase_view simpleBiosample=Peyers_patch-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF926IJX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF784QKD ENCSR000BSG Signal bigWig HCT116 SIN3A ENCSR000BSG signal 2 492 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/2782e354-471b-4f2e-b3c4-42e63563c728/ENCFF784QKD.bigWig\ color 86,86,36\ longLabel HCT116 SIN3A ENCSR000BSG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSG Signal\ track wgEncodeReg4TfChip_ENCFF784QKD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF255FAJ ENCSR000EMA Peak bigBed 5 AG09319 DNase peak 4 492 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/6a439482-53f8-4a33-9f2d-bb7caed549f0/ENCFF255FAJ.bigBed\ color 6,218,147\ labelFields none\ longLabel AG09319 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMA Peak\ track wgEncodeReg4Epigenetics_ENCFF255FAJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF367WHE ENCSR429EGC - strand bigWig Endothelial cell - strand total RNA-seq signal 2 492 221 126 107 238 190 181 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/57b2ee23-2624-451e-aa7b-446242d9abe8/ENCFF367WHE.bigWig\ color 221,126,107\ longLabel Endothelial cell - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR429EGC - strand\ track wgEncodeReg4RnaSeq_ENCFF367WHE\ type bigWig\ visibility full\ encTfChipPkENCFF655EFA K562 ARNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF655EFA) 0 492 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF655EFA)\ parent encTfChipPk off\ shortLabel K562 ARNT 1\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF655EFA\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse 0 492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse 1 492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep2%20%28MM%20XIV%20-%202%29.CNhs13158.12383-131E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep2 (MM XIV - 2)_CNhs13158_12383-131E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12383-131E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep2MMXIV2_CNhs13158_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12383-131E7\ urlLabel FANTOM5 Details:\ ENCFF221CLN ENCFF221CLN bigWig Spleen, female adult (61 years): (2) DNase, ENCFF221CLN 2 493 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF221CLN.bw\ color 6,218,147\ longLabel Spleen, female adult (61 years): (2) DNase, ENCFF221CLN\ maxHeightPixels 30\ parent DNase_view off\ priority 142.1\ shortLabel ENCFF221CLN\ subGroups organ=spleen view=DNase_view simpleBiosample=spleen-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeDNase\ track ENCFF221CLN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF810LEN ENCSR000BSH Peak bigBed 5 HCT116 MAX peaks 4 493 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/ae634296-2edf-43d1-a875-57aa41d8c672/ENCFF810LEN.bigBed\ labelFields none\ longLabel HCT116 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF810LEN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF015PVH ENCSR000EMA Signal bigWig AG09319 DNase signal 2 493 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/d19bd583-3226-488e-979a-aefdab70cbed/ENCFF015PVH.bigWig\ color 6,218,147\ longLabel AG09319 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMA Signal\ track wgEncodeReg4Epigenetics_ENCFF015PVH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF833YCY ENCSR429EWK + strand bigWig Thoracic aorta tissue male adult (37 years) + strand total RNA-seq signal 2 493 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/14b2ed94-de3d-459a-b096-9657c070aa45/ENCFF833YCY.bigWig\ color 255,37,41\ longLabel Thoracic aorta tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR429EWK + strand\ track wgEncodeReg4RnaSeq_ENCFF833YCY\ type bigWig\ visibility full\ encTfChipPkENCFF447FIO K562 ARNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF447FIO) 0 493 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF447FIO)\ parent encTfChipPk off\ shortLabel K562 ARNT 2\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF447FIO\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward 0 493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr15minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward 1 493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ ENCFF722LEE ENCFF722LEE bigWig Spleen, female adult (41 years): (2) DNase, ENCFF722LEE 2 494 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF722LEE.bw\ color 6,218,147\ longLabel Spleen, female adult (41 years): (2) DNase, ENCFF722LEE\ maxHeightPixels 30\ parent DNase_view off\ priority 139.1\ shortLabel ENCFF722LEE\ subGroups organ=spleen view=DNase_view simpleBiosample=spleen-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeDNase\ track ENCFF722LEE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF842QPT ENCSR000BSH Signal bigWig HCT116 MAX ENCSR000BSH signal 2 494 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/68b2b68e-a788-4cef-996e-5feb0eef5943/ENCFF842QPT.bigWig\ color 86,86,36\ longLabel HCT116 MAX ENCSR000BSH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSH Signal\ track wgEncodeReg4TfChip_ENCFF842QPT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF227FAL ENCSR000EMB Peak bigBed 5 AG10803 DNase peak 4 494 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/baa4c20b-d81b-42c1-8039-d1bba87e830a/ENCFF227FAL.bigBed\ color 6,218,147\ labelFields none\ longLabel AG10803 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMB Peak\ track wgEncodeReg4Epigenetics_ENCFF227FAL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF984JLW ENCSR429EWK - strand bigWig Thoracic aorta tissue male adult (37 years) - strand total RNA-seq signal 2 494 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/07/8295a143-b9b1-43d3-bddf-4b9210a8bbdd/ENCFF984JLW.bigWig\ color 255,37,41\ longLabel Thoracic aorta tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR429EWK - strand\ track wgEncodeReg4RnaSeq_ENCFF984JLW\ type bigWig\ visibility full\ encTfChipPkENCFF913AQF K562 ARNT 3 narrowPeak Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF913AQF) 0 494 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ARNT in K562 from ENCODE 3 (ENCFF913AQF)\ parent encTfChipPk off\ shortLabel K562 ARNT 3\ subGroups cellType=K562 factor=ARNT\ track encTfChipPkENCFF913AQF\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_rev LymphaticEndothelialCellsToVegfc_00hr15minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse 0 494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_rev LymphaticEndothelialCellsToVegfc_00hr15minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse 1 494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr15min%2c%20biol_rep3%20%28MM%20XXII%20-%202%29.CNhs13277.12505-133A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr15min, biol_rep3 (MM XXII - 2)_CNhs13277_12505-133A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12505-133A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr15minBiolRep3MMXXII2_CNhs13277_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12505-133A3\ urlLabel FANTOM5 Details:\ ENCFF162OQB ENCFF162OQB bigWig Spleen, female adult (53 years): (2) DNase, ENCFF162OQB 2 495 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF162OQB.bw\ color 6,218,147\ longLabel Spleen, female adult (53 years): (2) DNase, ENCFF162OQB\ maxHeightPixels 30\ parent DNase_view off\ priority 140.1\ shortLabel ENCFF162OQB\ subGroups organ=spleen view=DNase_view simpleBiosample=spleen-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF162OQB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF785DWK ENCSR000BSI Peak bigBed 5 H1 E2F6 peaks 4 495 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8e2e8c97-a15d-4bc2-9ec9-75ddc7fb5458/ENCFF785DWK.bigBed\ labelFields none\ longLabel H1 E2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF785DWK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF825CEN ENCSR000EMB Signal bigWig AG10803 DNase signal 2 495 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/6b870c6a-8b2b-4516-9f57-52b8ffd7dd67/ENCFF825CEN.bigWig\ color 6,218,147\ longLabel AG10803 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMB Signal\ track wgEncodeReg4Epigenetics_ENCFF825CEN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF210MJF ENCSR432EBE + strand bigWig Pancreas tissue female adult (59 years) + strand total RNA-seq signal 2 495 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/6fae569e-16ab-4957-ab75-b1ea6ac04ab8/ENCFF210MJF.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR432EBE + strand\ track wgEncodeReg4RnaSeq_ENCFF210MJF\ type bigWig\ visibility full\ encTfChipPkENCFF958YSG K562 ASH1L narrowPeak Transcription Factor ChIP-seq Peaks of ASH1L in K562 from ENCODE 3 (ENCFF958YSG) 0 495 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ASH1L in K562 from ENCODE 3 (ENCFF958YSG)\ parent encTfChipPk off\ shortLabel K562 ASH1L\ subGroups cellType=K562 factor=ASH1L\ track encTfChipPkENCFF958YSG\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward 0 495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward 1 495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ ENCFF867EIA ENCFF867EIA bigWig Spleen, female adult (59 years): (2) DNase, ENCFF867EIA 2 496 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF867EIA.bw\ color 6,218,147\ longLabel Spleen, female adult (59 years): (2) DNase, ENCFF867EIA\ maxHeightPixels 30\ parent DNase_view off\ priority 141.1\ shortLabel ENCFF867EIA\ subGroups organ=spleen view=DNase_view simpleBiosample=spleen-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeDNase\ track ENCFF867EIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF914VQY ENCSR000BSJ Peak bigBed 5 H1 MAX peaks 4 496 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/676beb1d-24c3-470a-979c-2808c716facc/ENCFF914VQY.bigBed\ labelFields none\ longLabel H1 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF914VQY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF769IJX ENCSR000EMC Peak bigBed 5 Fibroblast of the aortic adventitia female DNase peak 4 496 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/e6e09e9b-c07b-414b-a2e5-d1ece03bd8f9/ENCFF769IJX.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of the aortic adventitia female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMC Peak\ track wgEncodeReg4Epigenetics_ENCFF769IJX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF538YBZ ENCSR432EBE - strand bigWig Pancreas tissue female adult (59 years) - strand total RNA-seq signal 2 496 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/1cc9d845-72b5-4783-a2a9-10b1848bb237/ENCFF538YBZ.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR432EBE - strand\ track wgEncodeReg4RnaSeq_ENCFF538YBZ\ type bigWig\ visibility full\ encTfChipPkENCFF803FHN K562 ATF2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF2 in K562 from ENCODE 3 (ENCFF803FHN) 0 496 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF2 in K562 from ENCODE 3 (ENCFF803FHN)\ parent encTfChipPk off\ shortLabel K562 ATF2\ subGroups cellType=K562 factor=ATF2\ track encTfChipPkENCFF803FHN\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse 0 496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse 1 496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%203%29.CNhs13101.12262-130A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep1 (MM XIX - 3)_CNhs13101_12262-130A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12262-130A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep1MMXIX3_CNhs13101_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12262-130A3\ urlLabel FANTOM5 Details:\ ENCFF384IMH ENCFF384IMH bigWig Stomach, female adult (51 years): (2) DNase, ENCFF384IMH 2 497 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF384IMH.bw\ color 6,218,147\ longLabel Stomach, female adult (51 years): (2) DNase, ENCFF384IMH\ maxHeightPixels 30\ parent DNase_view off\ priority 143.1\ shortLabel ENCFF384IMH\ subGroups organ=stomach view=DNase_view simpleBiosample=stomach-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF384IMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF828CIK ENCSR000BSJ Signal bigWig H1 MAX ENCSR000BSJ signal 2 497 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/f9e4b53b-d0ef-41f9-9794-6de85b76cb28/ENCFF828CIK.bigWig\ color 118,158,101\ longLabel H1 MAX ENCSR000BSJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSJ Signal\ track wgEncodeReg4TfChip_ENCFF828CIK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF758YZS ENCSR000EMC Signal bigWig Fibroblast of the aortic adventitia female DNase signal 2 497 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/3a7f3d25-b936-4088-ac6f-facbdae4e37d/ENCFF758YZS.bigWig\ color 6,218,147\ longLabel Fibroblast of the aortic adventitia female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMC Signal\ track wgEncodeReg4Epigenetics_ENCFF758YZS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF169FHE ENCSR434TEU + strand bigWig Breast epithelium tissue female adult (53 years) + strand total RNA-seq signal 2 497 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/d64448b4-9247-42db-b173-7a5797cff93b/ENCFF169FHE.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR434TEU + strand\ track wgEncodeReg4RnaSeq_ENCFF169FHE\ type bigWig\ visibility full\ encTfChipPkENCFF467WOR K562 ATF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF467WOR) 0 497 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF467WOR)\ parent encTfChipPk off\ shortLabel K562 ATF3 1\ subGroups cellType=K562 factor=ATF3\ track encTfChipPkENCFF467WOR\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward 0 497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward 1 497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ ENCFF164EEU ENCFF164EEU bigWig Stomach, male adult (54 years): (2) DNase, ENCFF164EEU 2 498 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF164EEU.bw\ color 6,218,147\ longLabel Stomach, male adult (54 years): (2) DNase, ENCFF164EEU\ maxHeightPixels 30\ parent DNase_view off\ priority 146.1\ shortLabel ENCFF164EEU\ subGroups organ=stomach view=DNase_view simpleBiosample=stomach-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF164EEU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF551NEQ ENCSR000BSK Peak bigBed 5 SK-N-SH JUND peaks 4 498 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/3c73b320-796b-4118-86ed-613168624aa0/ENCFF551NEQ.bigBed\ labelFields none\ longLabel SK-N-SH JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF551NEQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF624XNX ENCSR000EME Peak bigBed 5 BJ DNase peak 4 498 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/099a452a-599e-4308-8857-105c2637ee56/ENCFF624XNX.bigBed\ color 6,218,147\ labelFields none\ longLabel BJ DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EME Peak\ track wgEncodeReg4Epigenetics_ENCFF624XNX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF314LDC ENCSR434TEU - strand bigWig Breast epithelium tissue female adult (53 years) - strand total RNA-seq signal 2 498 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/5709f552-48df-456d-bd59-9dfe5342801a/ENCFF314LDC.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR434TEU - strand\ track wgEncodeReg4RnaSeq_ENCFF314LDC\ type bigWig\ visibility full\ encTfChipPkENCFF937OKC K562 ATF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF937OKC) 0 498 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF3 in K562 from ENCODE 3 (ENCFF937OKC)\ parent encTfChipPk off\ shortLabel K562 ATF3 2\ subGroups cellType=K562 factor=ATF3\ track encTfChipPkENCFF937OKC\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse 0 498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse 1 498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%203%29.CNhs13159.12384-131E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep2 (MM XIV - 3)_CNhs13159_12384-131E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12384-131E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep2MMXIV3_CNhs13159_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12384-131E8\ urlLabel FANTOM5 Details:\ ENCFF493HHP ENCFF493HHP bigWig Stomach, female adult (53 years): (2) DNase, ENCFF493HHP 2 499 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF493HHP.bw\ color 6,218,147\ longLabel Stomach, female adult (53 years): (2) DNase, ENCFF493HHP\ maxHeightPixels 30\ parent DNase_view off\ priority 144.1\ shortLabel ENCFF493HHP\ subGroups organ=stomach view=DNase_view simpleBiosample=stomach-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF493HHP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF120SAA ENCSR000BSK Signal bigWig SK-N-SH JUND ENCSR000BSK signal 2 499 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/b9185ba7-6e1e-428e-a90c-0d98f42a4127/ENCFF120SAA.bigWig\ color 155,155,18\ longLabel SK-N-SH JUND ENCSR000BSK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSK Signal\ track wgEncodeReg4TfChip_ENCFF120SAA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF768KOM ENCSR000EME Signal bigWig BJ DNase signal 2 499 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/d5b74e1a-0e6a-474e-b666-445bc5273250/ENCFF768KOM.bigWig\ color 6,218,147\ longLabel BJ DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EME Signal\ track wgEncodeReg4Epigenetics_ENCFF768KOM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF671DKT ENCSR436QDU + strand bigWig Heart left ventricle tissue female adult (51 years) + strand total RNA-seq signal 2 499 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bebed656-2022-4757-a04f-527107c0fecc/ENCFF671DKT.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR436QDU + strand\ track wgEncodeReg4RnaSeq_ENCFF671DKT\ type bigWig\ visibility full\ encTfChipPkENCFF182MNO K562 ATF4 narrowPeak Transcription Factor ChIP-seq Peaks of ATF4 in K562 from ENCODE 3 (ENCFF182MNO) 0 499 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF4 in K562 from ENCODE 3 (ENCFF182MNO)\ parent encTfChipPk off\ shortLabel K562 ATF4\ subGroups cellType=K562 factor=ATF4\ track encTfChipPkENCFF182MNO\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward 0 499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward 1 499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ ENCFF017QTW ENCFF017QTW bigWig Stomach, male adult (37 years): (2) DNase, ENCFF017QTW 2 500 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF017QTW.bw\ color 6,218,147\ longLabel Stomach, male adult (37 years): (2) DNase, ENCFF017QTW\ maxHeightPixels 30\ parent DNase_view off\ priority 145.1\ shortLabel ENCFF017QTW\ subGroups organ=stomach view=DNase_view simpleBiosample=stomach-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF017QTW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF147AHB ENCSR000BSL Peak bigBed 5 SK-N-SH TCF12 peaks 4 500 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/04247782-fa75-46ad-af3d-1259fc0b66a8/ENCFF147AHB.bigBed\ labelFields none\ longLabel SK-N-SH TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF147AHB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF259EOL ENCSR000EMF Peak bigBed 5 HS-27A DNase peak 4 500 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/a8598ed3-cd5d-4e33-a2a2-4e798173aac8/ENCFF259EOL.bigBed\ color 6,218,147\ labelFields none\ longLabel HS-27A DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMF Peak\ track wgEncodeReg4Epigenetics_ENCFF259EOL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF192HBL ENCSR436QDU - strand bigWig Heart left ventricle tissue female adult (51 years) - strand total RNA-seq signal 2 500 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/d22eabc5-d0cf-49cd-ab1d-66fdf245bc3c/ENCFF192HBL.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR436QDU - strand\ track wgEncodeReg4RnaSeq_ENCFF192HBL\ type bigWig\ visibility full\ encTfChipPkENCFF371SJR K562 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in K562 from ENCODE 3 (ENCFF371SJR) 0 500 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in K562 from ENCODE 3 (ENCFF371SJR)\ parent encTfChipPk off\ shortLabel K562 ATF7\ subGroups cellType=K562 factor=ATF7\ track encTfChipPkENCFF371SJR\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_rev LymphaticEndothelialCellsToVegfc_00hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse 0 500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_rev LymphaticEndothelialCellsToVegfc_00hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse 1 500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%203%29.CNhs13278.12506-133A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr30min, biol_rep3 (MM XXII - 3)_CNhs13278_12506-133A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12506-133A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr30minBiolRep3MMXXII3_CNhs13278_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12506-133A4\ urlLabel FANTOM5 Details:\ ENCFF428COP ENCFF428COP bigWig Testis, male adult (54 years): (2) DNase, ENCFF428COP 2 501 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF428COP.bw\ color 6,218,147\ longLabel Testis, male adult (54 years): (2) DNase, ENCFF428COP\ maxHeightPixels 30\ parent DNase_view off\ priority 148.1\ shortLabel ENCFF428COP\ subGroups organ=testis view=DNase_view simpleBiosample=testis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF428COP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF154PJI ENCSR000BSL Signal bigWig SK-N-SH TCF12 ENCSR000BSL signal 2 501 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/aa6fcc55-4299-42c0-88e1-60abae780be5/ENCFF154PJI.bigWig\ color 155,155,18\ longLabel SK-N-SH TCF12 ENCSR000BSL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSL Signal\ track wgEncodeReg4TfChip_ENCFF154PJI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF734KTZ ENCSR000EMF Signal bigWig HS-27A DNase signal 2 501 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/76ee09b5-ff76-48c9-892c-8863f3f4fc16/ENCFF734KTZ.bigWig\ color 6,218,147\ longLabel HS-27A DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMF Signal\ track wgEncodeReg4Epigenetics_ENCFF734KTZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF237QNH ENCSR437HKI + strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 501 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6ebeb650-4a7c-4062-b6a7-ce1c17a09e9a/ENCFF237QNH.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR437HKI + strand\ track wgEncodeReg4RnaSeq_ENCFF237QNH\ type bigWig\ visibility full\ encTfChipPkENCFF543FNN K562 BACH1 narrowPeak Transcription Factor ChIP-seq Peaks of BACH1 in K562 from ENCODE 3 (ENCFF543FNN) 0 501 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BACH1 in K562 from ENCODE 3 (ENCFF543FNN)\ parent encTfChipPk off\ shortLabel K562 BACH1\ subGroups cellType=K562 factor=BACH1\ track encTfChipPkENCFF543FNN\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward 0 501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward 1 501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ ENCFF589CRI ENCFF589CRI bigWig Testis, male adult (37 years): (2) DNase, ENCFF589CRI 2 502 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF589CRI.bw\ color 6,218,147\ longLabel Testis, male adult (37 years): (2) DNase, ENCFF589CRI\ maxHeightPixels 30\ parent DNase_view off\ priority 147.1\ shortLabel ENCFF589CRI\ subGroups organ=testis view=DNase_view simpleBiosample=testis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF589CRI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF087JSD ENCSR000BSM Peak bigBed 5 SK-N-SH YY1 peaks 4 502 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/fda8c662-226f-4034-8021-0fdd62e290aa/ENCFF087JSD.bigBed\ labelFields none\ longLabel SK-N-SH YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF087JSD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF523TVO ENCSR000EMG Peak bigBed 5 HS-5 DNase peak 4 502 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/f963a86f-02ea-4829-a5a5-c65ad5c699c5/ENCFF523TVO.bigBed\ color 6,218,147\ labelFields none\ longLabel HS-5 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMG Peak\ track wgEncodeReg4Epigenetics_ENCFF523TVO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF102NAI ENCSR437HKI - strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 502 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/ae14857b-2b8f-4700-8b50-0834bdb5769e/ENCFF102NAI.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR437HKI - strand\ track wgEncodeReg4RnaSeq_ENCFF102NAI\ type bigWig\ visibility full\ encTfChipPkENCFF186JKG K562 BCOR narrowPeak Transcription Factor ChIP-seq Peaks of BCOR in K562 from ENCODE 3 (ENCFF186JKG) 0 502 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BCOR in K562 from ENCODE 3 (ENCFF186JKG)\ parent encTfChipPk off\ shortLabel K562 BCOR\ subGroups cellType=K562 factor=BCOR\ track encTfChipPkENCFF186JKG\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse 0 502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse 1 502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep1%20%28MM%20XIX%20-%204%29.CNhs13102.12263-130A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep1 (MM XIX - 4)_CNhs13102_12263-130A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12263-130A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep1MMXIX4_CNhs13102_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12263-130A4\ urlLabel FANTOM5 Details:\ ENCFF379EHP ENCFF379EHP bigWig Thyroid gland, female adult (51 years): (2) DNase, ENCFF379EHP 2 503 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF379EHP.bw\ color 6,218,147\ longLabel Thyroid gland, female adult (51 years): (2) DNase, ENCFF379EHP\ maxHeightPixels 30\ parent DNase_view off\ priority 150.1\ shortLabel ENCFF379EHP\ subGroups organ=thyroid view=DNase_view simpleBiosample=thyroid_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF379EHP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF155TGQ ENCSR000BSM Signal bigWig SK-N-SH YY1 ENCSR000BSM signal 2 503 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/c8cbaeb6-d141-418d-919a-50a5642d9404/ENCFF155TGQ.bigWig\ color 155,155,18\ longLabel SK-N-SH YY1 ENCSR000BSM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSM Signal\ track wgEncodeReg4TfChip_ENCFF155TGQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF740KQG ENCSR000EMG Signal bigWig HS-5 DNase signal 2 503 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/fcd77334-eeaa-485a-9025-add3383f5b2d/ENCFF740KQG.bigWig\ color 6,218,147\ longLabel HS-5 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMG Signal\ track wgEncodeReg4Epigenetics_ENCFF740KQG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF603PIL ENCSR438YPF + strand bigWig Breast epithelium tissue female adult (51 years) + strand total RNA-seq signal 2 503 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/02047f48-09a5-4a1d-bed6-6df57fbde976/ENCFF603PIL.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR438YPF + strand\ track wgEncodeReg4RnaSeq_ENCFF603PIL\ type bigWig\ visibility full\ encTfChipPkENCFF477JTV K562 BHLHE40 narrowPeak Transcription Factor ChIP-seq Peaks of BHLHE40 in K562 from ENCODE 3 (ENCFF477JTV) 0 503 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BHLHE40 in K562 from ENCODE 3 (ENCFF477JTV)\ parent encTfChipPk off\ shortLabel K562 BHLHE40\ subGroups cellType=K562 factor=BHLHE40\ track encTfChipPkENCFF477JTV\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward 0 503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward 1 503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ ENCFF017LRG ENCFF017LRG bigWig Thyroid gland, male adult (54 years): (2) DNase, ENCFF017LRG 2 504 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF017LRG.bw\ color 6,218,147\ longLabel Thyroid gland, male adult (54 years): (2) DNase, ENCFF017LRG\ maxHeightPixels 30\ parent DNase_view off\ priority 153.1\ shortLabel ENCFF017LRG\ subGroups organ=thyroid view=DNase_view simpleBiosample=thyroid_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeDNase\ track ENCFF017LRG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF955PMP ENCSR000BSN Peak bigBed 5 H1 CREB1 peaks 4 504 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/85ef5b70-892a-4e79-bb84-114b5ee0c704/ENCFF955PMP.bigBed\ labelFields none\ longLabel H1 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF955PMP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF027OUR ENCSR000EMH Peak bigBed 5 Stromal cell of bone marrow male DNase peak 4 504 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/418f6556-b9db-4e07-a144-8d1205bb0ca3/ENCFF027OUR.bigBed\ color 6,218,147\ labelFields none\ longLabel Stromal cell of bone marrow male DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMH Peak\ track wgEncodeReg4Epigenetics_ENCFF027OUR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF577TIW ENCSR438YPF - strand bigWig Breast epithelium tissue female adult (51 years) - strand total RNA-seq signal 2 504 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b692f1c9-ee9b-49d9-bfac-8f9d7dd26223/ENCFF577TIW.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR438YPF - strand\ track wgEncodeReg4RnaSeq_ENCFF577TIW\ type bigWig\ visibility full\ encTfChipPkENCFF352DRR K562 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in K562 from ENCODE 3 (ENCFF352DRR) 0 504 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in K562 from ENCODE 3 (ENCFF352DRR)\ parent encTfChipPk off\ shortLabel K562 BMI1\ subGroups cellType=K562 factor=BMI1\ track encTfChipPkENCFF352DRR\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse 0 504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse 1 504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep2%20%28MM%20XIV%20-%204%29.CNhs13160.12385-131E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep2 (MM XIV - 4)_CNhs13160_12385-131E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12385-131E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep2MMXIV4_CNhs13160_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12385-131E9\ urlLabel FANTOM5 Details:\ ENCFF047YGB ENCFF047YGB bigWig Thyroid gland, female adult (53 years): (2) DNase, ENCFF047YGB 2 505 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF047YGB.bw\ color 6,218,147\ longLabel Thyroid gland, female adult (53 years): (2) DNase, ENCFF047YGB\ maxHeightPixels 30\ parent DNase_view off\ priority 151.1\ shortLabel ENCFF047YGB\ subGroups organ=thyroid view=DNase_view simpleBiosample=thyroid_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF047YGB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF326DPO ENCSR000BSN Signal bigWig H1 CREB1 ENCSR000BSN signal 2 505 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/806a882b-406d-4628-9230-933c4fd4e107/ENCFF326DPO.bigWig\ color 118,158,101\ longLabel H1 CREB1 ENCSR000BSN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSN Signal\ track wgEncodeReg4TfChip_ENCFF326DPO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF106CGJ ENCSR000EMH Signal bigWig Stromal cell of bone marrow male DNase signal 2 505 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/0eb81f65-cce7-4fc7-b605-e4292a8dd9f2/ENCFF106CGJ.bigWig\ color 6,218,147\ longLabel Stromal cell of bone marrow male DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMH Signal\ track wgEncodeReg4Epigenetics_ENCFF106CGJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF698NHI ENCSR439PRN + strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal 2 505 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/7276f10f-5681-4de7-af06-2c7b033879eb/ENCFF698NHI.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR439PRN + strand\ track wgEncodeReg4RnaSeq_ENCFF698NHI\ type bigWig\ visibility full\ encTfChipPkENCFF652NES K562 BRCA1 narrowPeak Transcription Factor ChIP-seq Peaks of BRCA1 in K562 from ENCODE 3 (ENCFF652NES) 0 505 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BRCA1 in K562 from ENCODE 3 (ENCFF652NES)\ parent encTfChipPk off\ shortLabel K562 BRCA1\ subGroups cellType=K562 factor=BRCA1\ track encTfChipPkENCFF652NES\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward 0 505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_fwd LymphaticEndothelialCellsToVegfc_00hr45minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward 1 505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ ENCFF211HIT ENCFF211HIT bigWig Thyroid gland, male adult (37 years): (2) DNase, ENCFF211HIT 2 506 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF211HIT.bw\ color 6,218,147\ longLabel Thyroid gland, male adult (37 years): (2) DNase, ENCFF211HIT\ maxHeightPixels 30\ parent DNase_view off\ priority 152.1\ shortLabel ENCFF211HIT\ subGroups organ=thyroid view=DNase_view simpleBiosample=thyroid_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeDNase\ track ENCFF211HIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF175LMX ENCSR000BSO Peak bigBed 5 K562 CREB1 peaks 4 506 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/7ce7b7fc-4119-4075-8968-4623f2807d15/ENCFF175LMX.bigBed\ labelFields none\ longLabel K562 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF175LMX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF044LWB ENCSR000EMJ Peak bigBed 5 B cell female adult 43 years DNase peak 4 506 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/a5ffd41f-93d5-4c74-9c59-55d373211039/ENCFF044LWB.bigBed\ color 6,218,147\ labelFields none\ longLabel B cell female adult 43 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMJ Peak\ track wgEncodeReg4Epigenetics_ENCFF044LWB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF005HCR ENCSR439PRN - strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal 2 506 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/0e0b0075-1c7f-4a29-8224-ddde2f8d6cfc/ENCFF005HCR.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR439PRN - strand\ track wgEncodeReg4RnaSeq_ENCFF005HCR\ type bigWig\ visibility full\ encTfChipPkENCFF806CQB K562 BRD4 narrowPeak Transcription Factor ChIP-seq Peaks of BRD4 in K562 from ENCODE 3 (ENCFF806CQB) 0 506 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BRD4 in K562 from ENCODE 3 (ENCFF806CQB)\ parent encTfChipPk off\ shortLabel K562 BRD4\ subGroups cellType=K562 factor=BRD4\ track encTfChipPkENCFF806CQB\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_rev LymphaticEndothelialCellsToVegfc_00hr45minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse 0 506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_rev LymphaticEndothelialCellsToVegfc_00hr45minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse 1 506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2000hr45min%2c%20biol_rep3%20%28MM%20XXII%20-%204%29.CNhs13279.12507-133A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 00hr45min, biol_rep3 (MM XXII - 4)_CNhs13279_12507-133A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12507-133A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC00hr45minBiolRep3MMXXII4_CNhs13279_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12507-133A5\ urlLabel FANTOM5 Details:\ ENCFF757GHL ENCFF757GHL bigWig HeLa-S3: (2) DNase, ENCFF757GHL 2 507 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF757GHL.bw\ color 6,218,147\ longLabel HeLa-S3: (2) DNase, ENCFF757GHL\ maxHeightPixels 30\ parent DNase_view off\ priority 52.1\ shortLabel ENCFF757GHL\ subGroups organ=uterus view=DNase_view simpleBiosample=HeLa-S3 biosampleType=cell_line donor=ENCDO000AAB dataType=typeDNase\ track ENCFF757GHL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF517YHP ENCSR000BSO Signal bigWig K562 CREB1 ENCSR000BSO signal 2 507 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/ef3eda1a-531b-4a92-af55-48ae82e626f1/ENCFF517YHP.bigWig\ color 254,75,173\ longLabel K562 CREB1 ENCSR000BSO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSO Signal\ track wgEncodeReg4TfChip_ENCFF517YHP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF452URQ ENCSR000EMJ Signal bigWig B cell female adult 43 years DNase signal 2 507 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/8ca5a226-11bc-4970-8c74-fba359fb464a/ENCFF452URQ.bigWig\ color 6,218,147\ longLabel B cell female adult 43 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMJ Signal\ track wgEncodeReg4Epigenetics_ENCFF452URQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF418QHL ENCSR441IDG + strand bigWig Heart right ventricle tissue male adult (55 years) + strand total RNA-seq signal 2 507 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/0a025a8c-6b0c-432f-90ce-de60df2136a4/ENCFF418QHL.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (55 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR441IDG + strand\ track wgEncodeReg4RnaSeq_ENCFF418QHL\ type bigWig\ visibility full\ encTfChipPkENCFF411RMT K562 BRD9 narrowPeak Transcription Factor ChIP-seq Peaks of BRD9 in K562 from ENCODE 3 (ENCFF411RMT) 0 507 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of BRD9 in K562 from ENCODE 3 (ENCFF411RMT)\ parent encTfChipPk off\ shortLabel K562 BRD9\ subGroups cellType=K562 factor=BRD9\ track encTfChipPkENCFF411RMT\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward 0 507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward 1 507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ ENCFF609VNS ENCFF609VNS bigWig Uterus, female adult (53 years): (2) DNase, ENCFF609VNS 2 508 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF609VNS.bw\ color 6,218,147\ longLabel Uterus, female adult (53 years): (2) DNase, ENCFF609VNS\ maxHeightPixels 30\ parent DNase_view off\ priority 167.1\ shortLabel ENCFF609VNS\ subGroups organ=uterus view=DNase_view simpleBiosample=uterus-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF609VNS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF893RRD ENCSR000BSP Peak bigBed 5 MCF-7 REST peaks 4 508 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/2b6c0190-c0db-422b-8ca9-a1f50a277017/ENCFF893RRD.bigBed\ labelFields none\ longLabel MCF-7 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF893RRD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF508ANN ENCSR000EMK Peak bigBed 5 Hematopoietic multipotent progenitor cell DNase peak 4 508 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/d8b55903-2226-478c-ace1-b4e55329c0c1/ENCFF508ANN.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMK Peak\ track wgEncodeReg4Epigenetics_ENCFF508ANN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF037ZMH ENCSR441IDG - strand bigWig Heart right ventricle tissue male adult (55 years) - strand total RNA-seq signal 2 508 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/a43b483f-ef9b-4dcf-b20b-4e2020efd9b9/ENCFF037ZMH.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (55 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR441IDG - strand\ track wgEncodeReg4RnaSeq_ENCFF037ZMH\ type bigWig\ visibility full\ encTfChipPkENCFF104MXG K562 C11orf30 narrowPeak Transcription Factor ChIP-seq Peaks of C11orf30 in K562 from ENCODE 3 (ENCFF104MXG) 0 508 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of C11orf30 in K562 from ENCODE 3 (ENCFF104MXG)\ parent encTfChipPk off\ shortLabel K562 C11orf30\ subGroups cellType=K562 factor=C11orf30\ track encTfChipPkENCFF104MXG\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse 0 508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse 1 508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%205%29.CNhs13103.12264-130A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep1 (MM XIX - 5)_CNhs13103_12264-130A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12264-130A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep1MMXIX5_CNhs13103_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12264-130A5\ urlLabel FANTOM5 Details:\ ENCFF525EPU ENCFF525EPU bigWig Vagina, female adult (51 years): (2) DNase, ENCFF525EPU 2 509 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF525EPU.bw\ color 6,218,147\ longLabel Vagina, female adult (51 years): (2) DNase, ENCFF525EPU\ maxHeightPixels 30\ parent DNase_view off\ priority 168.1\ shortLabel ENCFF525EPU\ subGroups organ=vagina view=DNase_view simpleBiosample=vagina-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeDNase\ track ENCFF525EPU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF266WIG ENCSR000BSP Signal bigWig MCF-7 REST ENCSR000BSP signal 2 509 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0e5cb175-47fa-412f-87ac-7f154b33ecc3/ENCFF266WIG.bigWig\ color 65,171,173\ longLabel MCF-7 REST ENCSR000BSP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSP Signal\ track wgEncodeReg4TfChip_ENCFF266WIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF624CCK ENCSR000EMK Signal bigWig Hematopoietic multipotent progenitor cell DNase signal 2 509 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/b611c4e4-23a4-4059-87d0-91ac31001780/ENCFF624CCK.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMK Signal\ track wgEncodeReg4Epigenetics_ENCFF624CCK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF257WBX ENCSR443ASQ + strand bigWig Dorsolateral prefrontal cortex tissue female adult (83 years) + strand total RNA-seq signal 2 509 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/eeeb5f7e-8426-4f54-958e-a01b50f89d8e/ENCFF257WBX.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (83 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR443ASQ + strand\ track wgEncodeReg4RnaSeq_ENCFF257WBX\ type bigWig\ visibility full\ encTfChipPkENCFF419PEK K562 CBFA2T2 narrowPeak Transcription Factor ChIP-seq Peaks of CBFA2T2 in K562 from ENCODE 3 (ENCFF419PEK) 0 509 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBFA2T2 in K562 from ENCODE 3 (ENCFF419PEK)\ parent encTfChipPk off\ shortLabel K562 CBFA2T2\ subGroups cellType=K562 factor=CBFA2T2\ track encTfChipPkENCFF419PEK\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward 0 509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward 1 509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ ENCFF547JQK ENCFF547JQK bigWig Vagina, female adult (53 years): (2) DNase, ENCFF547JQK 2 510 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF547JQK.bw\ color 6,218,147\ longLabel Vagina, female adult (53 years): (2) DNase, ENCFF547JQK\ maxHeightPixels 30\ parent DNase_view off\ priority 169.1\ shortLabel ENCFF547JQK\ subGroups organ=vagina view=DNase_view simpleBiosample=vagina-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeDNase\ track ENCFF547JQK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF550FKT ENCSR000BSQ Peak bigBed 5 Ishikawa EGR1 peaks 4 510 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e149cd1d-fa77-431c-aafd-c8ddd260bbae/ENCFF550FKT.bigBed\ labelFields none\ longLabel Ishikawa EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF550FKT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF874PSL ENCSR000EML Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 26 years DNase peak 4 510 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/bd2a8588-cabe-4d98-b6b9-cc9326360a56/ENCFF874PSL.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 26 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EML Peak\ track wgEncodeReg4Epigenetics_ENCFF874PSL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF895AFC ENCSR443ASQ - strand bigWig Dorsolateral prefrontal cortex tissue female adult (83 years) - strand total RNA-seq signal 2 510 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/eb05e05e-3b26-48cc-a427-24db85083d26/ENCFF895AFC.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (83 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR443ASQ - strand\ track wgEncodeReg4RnaSeq_ENCFF895AFC\ type bigWig\ visibility full\ encTfChipPkENCFF153IFH K562 CBFA2T3 narrowPeak Transcription Factor ChIP-seq Peaks of CBFA2T3 in K562 from ENCODE 3 (ENCFF153IFH) 0 510 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBFA2T3 in K562 from ENCODE 3 (ENCFF153IFH)\ parent encTfChipPk off\ shortLabel K562 CBFA2T3\ subGroups cellType=K562 factor=CBFA2T3\ track encTfChipPkENCFF153IFH\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse 0 510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse 1 510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%205%29.CNhs13161.12386-131F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep2 (MM XIV - 5)_CNhs13161_12386-131F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12386-131F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep2MMXIV5_CNhs13161_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12386-131F1\ urlLabel FANTOM5 Details:\ ENCFF355RRY ENCFF355RRY bigWig Adrenal gland, female adult (51 years): (4) H3K27ac, ENCFF355RRY 2 511 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF355RRY.bw\ color 255,205,0\ longLabel Adrenal gland, female adult (51 years): (4) H3K27ac, ENCFF355RRY\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 3.3\ shortLabel ENCFF355RRY\ subGroups organ=adrenal_gland view=H3K27ac_view simpleBiosample=adrenal_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF355RRY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF822LPR ENCSR000BSQ Signal bigWig Ishikawa EGR1 ENCSR000BSQ signal 2 511 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5c04567a-e7b3-45df-a1df-aba2f3f0a03c/ENCFF822LPR.bigWig\ color 186,111,165\ longLabel Ishikawa EGR1 ENCSR000BSQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSQ Signal\ track wgEncodeReg4TfChip_ENCFF822LPR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF683LUG ENCSR000EML Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 26 years DNase signal 2 511 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/0cd04bd2-4542-4b4a-9797-4b81943b8522/ENCFF683LUG.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 26 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EML Signal\ track wgEncodeReg4Epigenetics_ENCFF683LUG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF485JGG ENCSR444WHQ + strand bigWig Skeletal muscle myoblast + strand total RNA-seq signal 2 511 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/75f2acd9-47b6-4880-9bac-c0f9f23c52db/ENCFF485JGG.bigWig\ color 137,135,170\ longLabel Skeletal muscle myoblast + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR444WHQ + strand\ track wgEncodeReg4RnaSeq_ENCFF485JGG\ type bigWig\ visibility full\ encTfChipPkENCFF163FLA K562 CBX1 narrowPeak Transcription Factor ChIP-seq Peaks of CBX1 in K562 from ENCODE 3 (ENCFF163FLA) 0 511 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX1 in K562 from ENCODE 3 (ENCFF163FLA)\ parent encTfChipPk off\ shortLabel K562 CBX1\ subGroups cellType=K562 factor=CBX1\ track encTfChipPkENCFF163FLA\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward 0 511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward 1 511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ ENCFF144JOJ ENCFF144JOJ bigWig Adrenal gland, male adult (54 years): (4) H3K27ac, ENCFF144JOJ 2 512 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF144JOJ.bw\ color 255,205,0\ longLabel Adrenal gland, male adult (54 years): (4) H3K27ac, ENCFF144JOJ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 6.3\ shortLabel ENCFF144JOJ\ subGroups organ=adrenal_gland view=H3K27ac_view simpleBiosample=adrenal_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF144JOJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF772ZTQ ENCSR000BSR Peak bigBed 5 MCF-7 CEBPB peaks 4 512 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/70279b9e-7b56-4d49-a32f-61f227e68f44/ENCFF772ZTQ.bigBed\ labelFields none\ longLabel MCF-7 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF772ZTQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF648YTI ENCSR000EMM Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell female adult 35 years DNase peak 4 512 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/94d99d6e-207d-484e-b9e5-cdf301f038ef/ENCFF648YTI.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell female adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMM Peak\ track wgEncodeReg4Epigenetics_ENCFF648YTI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF701QPQ ENCSR444WHQ - strand bigWig Skeletal muscle myoblast - strand total RNA-seq signal 2 512 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/f3d87cd5-3625-486e-802c-69c83dde9db2/ENCFF701QPQ.bigWig\ color 137,135,170\ longLabel Skeletal muscle myoblast - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR444WHQ - strand\ track wgEncodeReg4RnaSeq_ENCFF701QPQ\ type bigWig\ visibility full\ encTfChipPkENCFF378YKS K562 CBX3 1 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF378YKS) 0 512 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF378YKS)\ parent encTfChipPk off\ shortLabel K562 CBX3 1\ subGroups cellType=K562 factor=CBX3\ track encTfChipPkENCFF378YKS\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_rev LymphaticEndothelialCellsToVegfc_01hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse 0 512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_rev LymphaticEndothelialCellsToVegfc_01hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse 1 512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%205%29.CNhs13280.12508-133A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr00min, biol_rep3 (MM XXII - 5)_CNhs13280_12508-133A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12508-133A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr00minBiolRep3MMXXII5_CNhs13280_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12508-133A6\ urlLabel FANTOM5 Details:\ ENCFF988QAR ENCFF988QAR bigWig Adrenal gland, female adult (41 years): (4) H3K27ac, ENCFF988QAR 2 513 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF988QAR.bw\ color 255,205,0\ longLabel Adrenal gland, female adult (41 years): (4) H3K27ac, ENCFF988QAR\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 2.3\ shortLabel ENCFF988QAR\ subGroups organ=adrenal_gland view=H3K27ac_view simpleBiosample=adrenal_gland-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k27ac\ track ENCFF988QAR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF981IVQ ENCSR000BSR Signal bigWig MCF-7 CEBPB ENCSR000BSR signal 2 513 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/c2cd423d-cb03-4d36-b1b9-6d250660a9ad/ENCFF981IVQ.bigWig\ color 65,171,173\ longLabel MCF-7 CEBPB ENCSR000BSR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSR Signal\ track wgEncodeReg4TfChip_ENCFF981IVQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF110YMH ENCSR000EMM Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell female adult 35 years DNase signal 2 513 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/51a78d14-6e09-48ca-812c-cda98ef90b66/ENCFF110YMH.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell female adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMM Signal\ track wgEncodeReg4Epigenetics_ENCFF110YMH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF030XBO ENCSR446LDS + strand bigWig CD8-positive, alpha-beta memory T cell male adult (30 years) + strand total RNA-seq signal 2 513 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/af64c1c9-7943-4a11-8d91-d7109085983f/ENCFF030XBO.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta memory T cell male adult (30 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR446LDS + strand\ track wgEncodeReg4RnaSeq_ENCFF030XBO\ type bigWig\ visibility full\ encTfChipPkENCFF951BQB K562 CBX3 2 narrowPeak Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF951BQB) 0 513 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX3 in K562 from ENCODE 3 (ENCFF951BQB)\ parent encTfChipPk off\ shortLabel K562 CBX3 2\ subGroups cellType=K562 factor=CBX3\ track encTfChipPkENCFF951BQB\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward 0 513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward 1 513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ ENCFF235TYQ ENCFF235TYQ bigWig Adrenal gland, female adult (53 years): (4) H3K27ac, ENCFF235TYQ 2 514 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF235TYQ.bw\ color 255,205,0\ longLabel Adrenal gland, female adult (53 years): (4) H3K27ac, ENCFF235TYQ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 4.3\ shortLabel ENCFF235TYQ\ subGroups organ=adrenal_gland view=H3K27ac_view simpleBiosample=adrenal_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF235TYQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF687CWI ENCSR000BSS Peak bigBed 5 MCF-7 ELF1 peaks 4 514 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/aa90701d-6429-4cac-89d0-24bbf49e3ccd/ENCFF687CWI.bigBed\ labelFields none\ longLabel MCF-7 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF687CWI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF104RKX ENCSR000EMN Peak bigBed 5 CMK DNase peak 4 514 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/2fc68356-642d-4d09-8e2d-4850de066b61/ENCFF104RKX.bigBed\ color 6,218,147\ labelFields none\ longLabel CMK DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMN Peak\ track wgEncodeReg4Epigenetics_ENCFF104RKX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF822RUA ENCSR446LDS - strand bigWig CD8-positive, alpha-beta memory T cell male adult (30 years) - strand total RNA-seq signal 2 514 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/25214d46-cad5-4236-bb60-2aa9470e9a68/ENCFF822RUA.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta memory T cell male adult (30 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR446LDS - strand\ track wgEncodeReg4RnaSeq_ENCFF822RUA\ type bigWig\ visibility full\ encTfChipPkENCFF403TAE K562 CBX5 narrowPeak Transcription Factor ChIP-seq Peaks of CBX5 in K562 from ENCODE 3 (ENCFF403TAE) 0 514 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CBX5 in K562 from ENCODE 3 (ENCFF403TAE)\ parent encTfChipPk off\ shortLabel K562 CBX5\ subGroups cellType=K562 factor=CBX5\ track encTfChipPkENCFF403TAE\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse 0 514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse 1 514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep1%20%28MM%20XIX%20-%206%29.CNhs13104.12265-130A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep1 (MM XIX - 6)_CNhs13104_12265-130A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12265-130A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep1MMXIX6_CNhs13104_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12265-130A6\ urlLabel FANTOM5 Details:\ ENCFF860MMV ENCFF860MMV bigWig Adrenal gland, male adult (37 years): (4) H3K27ac, ENCFF860MMV 2 515 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF860MMV.bw\ color 255,205,0\ longLabel Adrenal gland, male adult (37 years): (4) H3K27ac, ENCFF860MMV\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 5.3\ shortLabel ENCFF860MMV\ subGroups organ=adrenal_gland view=H3K27ac_view simpleBiosample=adrenal_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF860MMV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF643PJK ENCSR000BSS Signal bigWig MCF-7 ELF1 ENCSR000BSS signal 2 515 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/cb076a60-f3d9-4a58-b658-bddadbe924d0/ENCFF643PJK.bigWig\ color 65,171,173\ longLabel MCF-7 ELF1 ENCSR000BSS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSS Signal\ track wgEncodeReg4TfChip_ENCFF643PJK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF926VDN ENCSR000EMN Signal bigWig CMK DNase signal 2 515 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/063b15c3-e586-4a9e-bfcc-30f466e5059e/ENCFF926VDN.bigWig\ color 6,218,147\ longLabel CMK DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMN Signal\ track wgEncodeReg4Epigenetics_ENCFF926VDN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF474TCR ENCSR446QMB + strand bigWig Dorsolateral prefrontal cortex tissue female adult (85 years) + strand total RNA-seq signal 2 515 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/9e1a359e-7608-4f72-8dda-615a3f18e419/ENCFF474TCR.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (85 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR446QMB + strand\ track wgEncodeReg4RnaSeq_ENCFF474TCR\ type bigWig\ visibility full\ encTfChipPkENCFF180TUM K562 CC2D1A narrowPeak Transcription Factor ChIP-seq Peaks of CC2D1A in K562 from ENCODE 3 (ENCFF180TUM) 0 515 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CC2D1A in K562 from ENCODE 3 (ENCFF180TUM)\ parent encTfChipPk off\ shortLabel K562 CC2D1A\ subGroups cellType=K562 factor=CC2D1A\ track encTfChipPkENCFF180TUM\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward 0 515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward 1 515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ ENCFF849TDM ENCFF849TDM bigWig K562: (4) H3K27ac, ENCFF849TDM 2 516 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF849TDM.bw\ color 255,205,0\ longLabel K562: (4) H3K27ac, ENCFF849TDM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 58.3\ shortLabel ENCFF849TDM\ subGroups organ=blood view=H3K27ac_view simpleBiosample=K562 biosampleType=cell_line donor=ENCDO000AAD dataType=typeH3k27ac\ track ENCFF849TDM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF437NQS ENCSR000BST Peak bigBed 5 MCF-7 GATA3 peaks 4 516 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/5b06bd72-4b57-4963-9531-e957a0182a5f/ENCFF437NQS.bigBed\ labelFields none\ longLabel MCF-7 GATA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BST Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF437NQS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF810BOE ENCSR000EMO Peak bigBed 5 GM04503 DNase peak 4 516 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/4d751dd2-98d0-42bb-af0f-7e39e094b250/ENCFF810BOE.bigBed\ color 6,218,147\ labelFields none\ longLabel GM04503 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMO Peak\ track wgEncodeReg4Epigenetics_ENCFF810BOE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF428VUP ENCSR446QMB - strand bigWig Dorsolateral prefrontal cortex tissue female adult (85 years) - strand total RNA-seq signal 2 516 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/b30985e4-6e2c-4007-9370-4a6cf27a1817/ENCFF428VUP.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (85 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR446QMB - strand\ track wgEncodeReg4RnaSeq_ENCFF428VUP\ type bigWig\ visibility full\ encTfChipPkENCFF704PGT K562 CCAR2 narrowPeak Transcription Factor ChIP-seq Peaks of CCAR2 in K562 from ENCODE 3 (ENCFF704PGT) 0 516 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CCAR2 in K562 from ENCODE 3 (ENCFF704PGT)\ parent encTfChipPk off\ shortLabel K562 CCAR2\ subGroups cellType=K562 factor=CCAR2\ track encTfChipPkENCFF704PGT\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse 0 516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse 1 516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep2%20%28MM%20XIV%20-%206%29.CNhs13162.12387-131F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep2 (MM XIV - 6)_CNhs13162_12387-131F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12387-131F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep2MMXIV6_CNhs13162_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12387-131F2\ urlLabel FANTOM5 Details:\ ENCFF469WVA ENCFF469WVA bigWig GM12878: (4) H3K27ac, ENCFF469WVA 2 517 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF469WVA.bw\ color 255,205,0\ longLabel GM12878: (4) H3K27ac, ENCFF469WVA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 34.3\ shortLabel ENCFF469WVA\ subGroups organ=blood view=H3K27ac_view simpleBiosample=GM12878 biosampleType=cell_line donor=ENCDO000AAK dataType=typeH3k27ac\ track ENCFF469WVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF342GNN ENCSR000BST Signal bigWig MCF-7 GATA3 ENCSR000BST signal 2 517 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/70a900a0-64e8-4a06-96d7-97a02f61356c/ENCFF342GNN.bigWig\ color 65,171,173\ longLabel MCF-7 GATA3 ENCSR000BST signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BST Signal\ track wgEncodeReg4TfChip_ENCFF342GNN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF207SYF ENCSR000EMO Signal bigWig GM04503 DNase signal 2 517 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/5a1f1492-e4b5-4736-ab70-99fdc4a12ca2/ENCFF207SYF.bigWig\ color 6,218,147\ longLabel GM04503 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMO Signal\ track wgEncodeReg4Epigenetics_ENCFF207SYF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF681QWB ENCSR447WLU + strand bigWig Dorsolateral prefrontal cortex tissue male adult (78 years) + strand total RNA-seq signal 2 517 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/06af0f8e-f688-48a6-9e5c-98c08c8d9668/ENCFF681QWB.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (78 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR447WLU + strand\ track wgEncodeReg4RnaSeq_ENCFF681QWB\ type bigWig\ visibility full\ encTfChipPkENCFF384ALH K562 CDC5L narrowPeak Transcription Factor ChIP-seq Peaks of CDC5L in K562 from ENCODE 3 (ENCFF384ALH) 0 517 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CDC5L in K562 from ENCODE 3 (ENCFF384ALH)\ parent encTfChipPk off\ shortLabel K562 CDC5L\ subGroups cellType=K562 factor=CDC5L\ track encTfChipPkENCFF384ALH\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward 0 517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr20minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward 1 517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ ENCFF383GZA ENCFF383GZA bigWig HL-60: (4) H3K27ac, ENCFF383GZA 2 518 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF383GZA.bw\ color 255,205,0\ longLabel HL-60: (4) H3K27ac, ENCFF383GZA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 56.3\ shortLabel ENCFF383GZA\ subGroups organ=blood view=H3K27ac_view simpleBiosample=HL-60 biosampleType=cell_line donor=ENCDO000AAM dataType=typeH3k27ac\ track ENCFF383GZA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF450KFZ ENCSR000BSU Peak bigBed 5 MCF-7 JUND peaks 4 518 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/374cee3f-3046-480e-8dd2-a250c65600d6/ENCFF450KFZ.bigBed\ labelFields none\ longLabel MCF-7 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF450KFZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF343LJX ENCSR000EMP Peak bigBed 5 GM04504 DNase peak 4 518 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/b0de4366-a634-4b2a-8e07-862b25f428a6/ENCFF343LJX.bigBed\ color 6,218,147\ labelFields none\ longLabel GM04504 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMP Peak\ track wgEncodeReg4Epigenetics_ENCFF343LJX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF756BSK ENCSR447WLU - strand bigWig Dorsolateral prefrontal cortex tissue male adult (78 years) - strand total RNA-seq signal 2 518 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/3836e01d-471d-4b23-b245-a58247189033/ENCFF756BSK.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (78 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR447WLU - strand\ track wgEncodeReg4RnaSeq_ENCFF756BSK\ type bigWig\ visibility full\ encTfChipPkENCFF321KQD K562 CEBPB narrowPeak Transcription Factor ChIP-seq Peaks of CEBPB in K562 from ENCODE 3 (ENCFF321KQD) 0 518 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CEBPB in K562 from ENCODE 3 (ENCFF321KQD)\ parent encTfChipPk off\ shortLabel K562 CEBPB\ subGroups cellType=K562 factor=CEBPB\ track encTfChipPkENCFF321KQD\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_rev LymphaticEndothelialCellsToVegfc_01hr20minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse 0 518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_rev LymphaticEndothelialCellsToVegfc_01hr20minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse 1 518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr20min%2c%20biol_rep3%20%28MM%20XXII%20-%206%29.CNhs13281.12509-133A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr20min, biol_rep3 (MM XXII - 6)_CNhs13281_12509-133A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12509-133A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr20minBiolRep3MMXXII6_CNhs13281_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12509-133A7\ urlLabel FANTOM5 Details:\ ENCFF341LLL ENCFF341LLL bigWig DND-41: (4) H3K27ac, ENCFF341LLL 2 519 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF341LLL.bw\ color 255,205,0\ longLabel DND-41: (4) H3K27ac, ENCFF341LLL\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 24.3\ shortLabel ENCFF341LLL\ subGroups organ=blood view=H3K27ac_view simpleBiosample=DND-41 biosampleType=cell_line donor=ENCDO183AAA dataType=typeH3k27ac\ track ENCFF341LLL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF117QCR ENCSR000BSU Signal bigWig MCF-7 JUND ENCSR000BSU signal 2 519 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8e275c7b-a94b-4596-8710-57537df2950e/ENCFF117QCR.bigWig\ color 65,171,173\ longLabel MCF-7 JUND ENCSR000BSU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSU Signal\ track wgEncodeReg4TfChip_ENCFF117QCR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF990JCB ENCSR000EMP Signal bigWig GM04504 DNase signal 2 519 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/e182a643-0f4e-4e8b-8a3b-dba8d32d0f6b/ENCFF990JCB.bigWig\ color 6,218,147\ longLabel GM04504 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMP Signal\ track wgEncodeReg4Epigenetics_ENCFF990JCB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF327YQU ENCSR448BTT + strand bigWig Lower lobe of left lung tissue male adult (60 years) + strand total RNA-seq signal 2 519 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/02952f76-c2bc-4b09-878f-630a002438c8/ENCFF327YQU.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR448BTT + strand\ track wgEncodeReg4RnaSeq_ENCFF327YQU\ type bigWig\ visibility full\ encTfChipPkENCFF646MEF K562 CHAMP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF646MEF) 0 519 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF646MEF)\ parent encTfChipPk off\ shortLabel K562 CHAMP1 1\ subGroups cellType=K562 factor=CHAMP1\ track encTfChipPkENCFF646MEF\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward 0 519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward 1 519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ ENCFF611XLA ENCFF611XLA bigWig OCI-LY7: (4) H3K27ac, ENCFF611XLA 2 520 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF611XLA.bw\ color 255,205,0\ longLabel OCI-LY7: (4) H3K27ac, ENCFF611XLA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 118.3\ shortLabel ENCFF611XLA\ subGroups organ=blood view=H3K27ac_view simpleBiosample=OCI-LY7 biosampleType=cell_line donor=ENCDO351AAA dataType=typeH3k27ac\ track ENCFF611XLA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF965AKM ENCSR000BSV Peak bigBed 5 SK-N-SH NFIC peaks 4 520 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ae9247b8-ce88-4c69-a71f-f6e4eceda511/ENCFF965AKM.bigBed\ labelFields none\ longLabel SK-N-SH NFIC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF965AKM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF977HWX ENCSR000EMQ Peak bigBed 5 GM06990 DNase peak 4 520 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/fa04d963-90c1-464d-bd16-0be55b722816/ENCFF977HWX.bigBed\ color 6,218,147\ labelFields none\ longLabel GM06990 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMQ Peak\ track wgEncodeReg4Epigenetics_ENCFF977HWX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF282EII ENCSR448BTT - strand bigWig Lower lobe of left lung tissue male adult (60 years) - strand total RNA-seq signal 2 520 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/1426fc91-4cdc-43b8-91ef-32af1b79cac1/ENCFF282EII.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR448BTT - strand\ track wgEncodeReg4RnaSeq_ENCFF282EII\ type bigWig\ visibility full\ encTfChipPkENCFF919KNQ K562 CHAMP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF919KNQ) 0 520 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CHAMP1 in K562 from ENCODE 3 (ENCFF919KNQ)\ parent encTfChipPk off\ shortLabel K562 CHAMP1 2\ subGroups cellType=K562 factor=CHAMP1\ track encTfChipPkENCFF919KNQ\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse 0 520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse 1 520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep1%20%28MM%20XIX%20-%207%29.CNhs13105.12266-130A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep1 (MM XIX - 7)_CNhs13105_12266-130A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12266-130A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep1MMXIX7_CNhs13105_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12266-130A7\ urlLabel FANTOM5 Details:\ ENCFF481LLD ENCFF481LLD bigWig MM.1S: (4) H3K27ac, ENCFF481LLD 2 521 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF481LLD.bw\ color 255,205,0\ longLabel MM.1S: (4) H3K27ac, ENCFF481LLD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 115.3\ shortLabel ENCFF481LLD\ subGroups organ=blood view=H3K27ac_view simpleBiosample=MM_1S biosampleType=cell_line donor=ENCDO697GBW dataType=typeH3k27ac\ track ENCFF481LLD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF616MLR ENCSR000BSV Signal bigWig SK-N-SH NFIC ENCSR000BSV signal 2 521 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/5f98f95b-6725-4b61-8e33-a44da691e3fa/ENCFF616MLR.bigWig\ color 155,155,18\ longLabel SK-N-SH NFIC ENCSR000BSV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSV Signal\ track wgEncodeReg4TfChip_ENCFF616MLR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF691MRD ENCSR000EMQ Signal bigWig GM06990 DNase signal 2 521 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/ff0f80d4-a478-4467-a810-e0e3506f36a6/ENCFF691MRD.bigWig\ color 6,218,147\ longLabel GM06990 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMQ Signal\ track wgEncodeReg4Epigenetics_ENCFF691MRD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF542BVY ENCSR450BNZ + strand bigWig Peyer's patch tissue female adult (51 years) + strand total RNA-seq signal 2 521 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/d6b4c9a8-fbd3-498d-a629-185ede0a8b91/ENCFF542BVY.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR450BNZ + strand\ track wgEncodeReg4RnaSeq_ENCFF542BVY\ type bigWig\ visibility full\ encTfChipPkENCFF552EBC K562 COPS2 narrowPeak Transcription Factor ChIP-seq Peaks of COPS2 in K562 from ENCODE 3 (ENCFF552EBC) 0 521 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of COPS2 in K562 from ENCODE 3 (ENCFF552EBC)\ parent encTfChipPk off\ shortLabel K562 COPS2\ subGroups cellType=K562 factor=COPS2\ track encTfChipPkENCFF552EBC\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward 0 521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward 1 521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ ENCFF184NWF ENCFF184NWF bigWig CD14-positive monocyte, female: (4) H3K27ac, ENCFF184NWF 2 522 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF184NWF.bw\ color 255,205,0\ longLabel CD14-positive monocyte, female: (4) H3K27ac, ENCFF184NWF\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 20.3\ shortLabel ENCFF184NWF\ subGroups organ=blood view=H3K27ac_view simpleBiosample=CD14-positive_monocyte-_female biosampleType=primary_cell donor=ENCDO265AAA dataType=typeH3k27ac\ track ENCFF184NWF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF772OTG ENCSR000BSW Peak bigBed 5 Ishikawa TEAD4 peaks 4 522 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/2094e258-120b-4602-a9f4-ea94a966b5f5/ENCFF772OTG.bigBed\ labelFields none\ longLabel Ishikawa TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF772OTG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF036UND ENCSR000EMR Peak bigBed 5 GM12864 DNase peak 4 522 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/904e215e-76d2-4b85-b7e1-719da7c04b64/ENCFF036UND.bigBed\ color 6,218,147\ labelFields none\ longLabel GM12864 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMR Peak\ track wgEncodeReg4Epigenetics_ENCFF036UND\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF777ZGT ENCSR450BNZ - strand bigWig Peyer's patch tissue female adult (51 years) - strand total RNA-seq signal 2 522 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f7634b67-6134-4e43-ac69-47cc691012fe/ENCFF777ZGT.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR450BNZ - strand\ track wgEncodeReg4RnaSeq_ENCFF777ZGT\ type bigWig\ visibility full\ encTfChipPkENCFF566HGU K562 CREB3L1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB3L1 in K562 from ENCODE 3 (ENCFF566HGU) 0 522 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CREB3L1 in K562 from ENCODE 3 (ENCFF566HGU)\ parent encTfChipPk off\ shortLabel K562 CREB3L1\ subGroups cellType=K562 factor=CREB3L1\ track encTfChipPkENCFF566HGU\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse 0 522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse 1 522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep2%20%28MM%20XIV%20-%207%29.CNhs13163.12388-131F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep2 (MM XIV - 7)_CNhs13163_12388-131F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12388-131F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep2MMXIV7_CNhs13163_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12388-131F3\ urlLabel FANTOM5 Details:\ ENCFF575FKS ENCFF575FKS bigWig Brain microvascular endothelial cell: (4) H3K27ac, ENCFF575FKS 2 523 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF575FKS.bw\ color 255,205,0\ longLabel Brain microvascular endothelial cell: (4) H3K27ac, ENCFF575FKS\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 16.3\ shortLabel ENCFF575FKS\ subGroups organ=blood_vessel view=H3K27ac_view simpleBiosample=brain_microvascular_endothelial_cell biosampleType=primary_cell donor=ENCDO227AAA dataType=typeH3k27ac\ track ENCFF575FKS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF585GTH ENCSR000BSW Signal bigWig Ishikawa TEAD4 ENCSR000BSW signal 2 523 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a6544213-567f-423a-98d6-b0d790f03a77/ENCFF585GTH.bigWig\ color 186,111,165\ longLabel Ishikawa TEAD4 ENCSR000BSW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSW Signal\ track wgEncodeReg4TfChip_ENCFF585GTH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF218CLQ ENCSR000EMR Signal bigWig GM12864 DNase signal 2 523 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/72383290-a092-4874-8cad-654a7886677d/ENCFF218CLQ.bigWig\ color 6,218,147\ longLabel GM12864 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMR Signal\ track wgEncodeReg4Epigenetics_ENCFF218CLQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF498TQF ENCSR450ENK + strand bigWig Suprapubic skin tissue female adult (53 years) + strand total RNA-seq signal 2 523 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/278c6850-d251-4f8d-97a3-c6e105c35871/ENCFF498TQF.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR450ENK + strand\ track wgEncodeReg4RnaSeq_ENCFF498TQF\ type bigWig\ visibility full\ encTfChipPkENCFF678FRK K562 CREBBP narrowPeak Transcription Factor ChIP-seq Peaks of CREBBP in K562 from ENCODE 3 (ENCFF678FRK) 0 523 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CREBBP in K562 from ENCODE 3 (ENCFF678FRK)\ parent encTfChipPk off\ shortLabel K562 CREBBP\ subGroups cellType=K562 factor=CREBBP\ track encTfChipPkENCFF678FRK\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward 0 523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_fwd LymphaticEndothelialCellsToVegfc_01hr40minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward 1 523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ ENCFF557HHH ENCFF557HHH bigWig Ascending aorta, female adult (51 years): (4) H3K27ac, ENCFF557HHH 2 524 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF557HHH.bw\ color 255,205,0\ longLabel Ascending aorta, female adult (51 years): (4) H3K27ac, ENCFF557HHH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 8.3\ shortLabel ENCFF557HHH\ subGroups organ=blood_vessel view=H3K27ac_view simpleBiosample=ascending_aorta-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF557HHH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF728IEG ENCSR000BSX Peak bigBed 5 Ishikawa USF1 peaks 4 524 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/4d13bc33-3f79-401c-b49b-433a8561edf9/ENCFF728IEG.bigBed\ labelFields none\ longLabel Ishikawa USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF728IEG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF830BXD ENCSR000EMS Signal bigWig GM12865 DNase signal 2 524 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/0397f067-94e6-465d-8d41-5afc4ccedcc4/ENCFF830BXD.bigWig\ color 6,218,147\ longLabel GM12865 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMS Signal\ track wgEncodeReg4Epigenetics_ENCFF830BXD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF051DSY ENCSR450ENK - strand bigWig Suprapubic skin tissue female adult (53 years) - strand total RNA-seq signal 2 524 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/617c02a5-64bd-4361-a556-ef2ab33ac833/ENCFF051DSY.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR450ENK - strand\ track wgEncodeReg4RnaSeq_ENCFF051DSY\ type bigWig\ visibility full\ encTfChipPkENCFF021XJN K562 CREM narrowPeak Transcription Factor ChIP-seq Peaks of CREM in K562 from ENCODE 3 (ENCFF021XJN) 0 524 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CREM in K562 from ENCODE 3 (ENCFF021XJN)\ parent encTfChipPk off\ shortLabel K562 CREM\ subGroups cellType=K562 factor=CREM\ track encTfChipPkENCFF021XJN\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_rev LymphaticEndothelialCellsToVegfc_01hr40minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse 0 524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_rev LymphaticEndothelialCellsToVegfc_01hr40minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse 1 524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2001hr40min%2c%20biol_rep3%20%28MM%20XXII%20-%207%29.CNhs13282.12510-133A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 01hr40min, biol_rep3 (MM XXII - 7)_CNhs13282_12510-133A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12510-133A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC01hr40minBiolRep3MMXXII7_CNhs13282_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12510-133A8\ urlLabel FANTOM5 Details:\ ENCFF118EKX ENCFF118EKX bigWig Ascending aorta, female adult (53 years): (4) H3K27ac, ENCFF118EKX 2 525 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF118EKX.bw\ color 255,205,0\ longLabel Ascending aorta, female adult (53 years): (4) H3K27ac, ENCFF118EKX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 9.3\ shortLabel ENCFF118EKX\ subGroups organ=blood_vessel view=H3K27ac_view simpleBiosample=ascending_aorta-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF118EKX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF119JLW ENCSR000BSX Signal bigWig Ishikawa USF1 ENCSR000BSX signal 2 525 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/56c830e1-d09a-4e89-b5ef-a10b5cc1e6f7/ENCFF119JLW.bigWig\ color 186,111,165\ longLabel Ishikawa USF1 ENCSR000BSX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSX Signal\ track wgEncodeReg4TfChip_ENCFF119JLW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF412PRG ENCSR000EMT Peak bigBed 5 GM12878 DNase peak 4 525 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/1470bc2b-1943-49fc-b082-749296f99649/ENCFF412PRG.bigBed\ color 6,218,147\ labelFields none\ longLabel GM12878 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMT Peak\ track wgEncodeReg4Epigenetics_ENCFF412PRG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF101HNE ENCSR450EXF + strand bigWig WTC11 + strand total RNA-seq signal 2 525 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/95a8b489-123a-438f-9c14-aaa4291db364/ENCFF101HNE.bigWig\ color 127,133,209\ longLabel WTC11 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR450EXF + strand\ track wgEncodeReg4RnaSeq_ENCFF101HNE\ type bigWig\ visibility full\ encTfChipPkENCFF349UTF K562 CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in K562 from ENCODE 3 (ENCFF349UTF) 0 525 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in K562 from ENCODE 3 (ENCFF349UTF)\ parent encTfChipPk off\ shortLabel K562 CTBP1\ subGroups cellType=K562 factor=CTBP1\ track encTfChipPkENCFF349UTF\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward 0 525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward 1 525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ ENCFF130NUG ENCFF130NUG bigWig Coronary artery, female adult (53 years): (4) H3K27ac, ENCFF130NUG 2 526 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF130NUG.bw\ color 255,205,0\ longLabel Coronary artery, female adult (53 years): (4) H3K27ac, ENCFF130NUG\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 23.3\ shortLabel ENCFF130NUG\ subGroups organ=blood_vessel view=H3K27ac_view simpleBiosample=coronary_artery-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF130NUG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF505XQX ENCSR000BSY Peak bigBed 5 Ishikawa YY1 peaks 4 526 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4c28d81b-2840-4f74-b342-b9259a35bcd1/ENCFF505XQX.bigBed\ labelFields none\ longLabel Ishikawa YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF505XQX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF428XFI ENCSR000EMT Signal bigWig GM12878 DNase signal 2 526 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/0943d9e8-f3dc-4bba-933c-1387d68c1cc3/ENCFF428XFI.bigWig\ color 6,218,147\ longLabel GM12878 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMT Signal\ track wgEncodeReg4Epigenetics_ENCFF428XFI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF317YUR ENCSR450EXF - strand bigWig WTC11 - strand total RNA-seq signal 2 526 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/06/29fc64f8-79c8-4343-adbc-7c53a00bcab9/ENCFF317YUR.bigWig\ color 127,133,209\ longLabel WTC11 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR450EXF - strand\ track wgEncodeReg4RnaSeq_ENCFF317YUR\ type bigWig\ visibility full\ encTfChipPkENCFF843VHC K562 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF843VHC) 0 526 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF843VHC)\ parent encTfChipPk on\ shortLabel K562 CTCF 1\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF843VHC\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse 0 526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse 1 526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%208%29.CNhs13106.12267-130A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep1 (MM XIX - 8)_CNhs13106_12267-130A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12267-130A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep1MMXIX8_CNhs13106_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12267-130A8\ urlLabel FANTOM5 Details:\ ENCFF762YWL ENCFF762YWL bigWig Thoracic aorta, male adult (37 years): (4) H3K27ac, ENCFF762YWL 2 527 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF762YWL.bw\ color 255,205,0\ longLabel Thoracic aorta, male adult (37 years): (4) H3K27ac, ENCFF762YWL\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 149.3\ shortLabel ENCFF762YWL\ subGroups organ=blood_vessel view=H3K27ac_view simpleBiosample=thoracic_aorta-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF762YWL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF022DUI ENCSR000BSY Signal bigWig Ishikawa YY1 ENCSR000BSY signal 2 527 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/42ffdd51-93ee-40d5-a25c-7e9476972405/ENCFF022DUI.bigWig\ color 186,111,165\ longLabel Ishikawa YY1 ENCSR000BSY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSY Signal\ track wgEncodeReg4TfChip_ENCFF022DUI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF757KQY ENCSR000EMU Peak bigBed 5 H1 DNase peak 4 527 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/9bc477e7-bed9-44d9-8a2f-f7bd0d953a5b/ENCFF757KQY.bigBed\ color 6,218,147\ labelFields none\ longLabel H1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMU Peak\ track wgEncodeReg4Epigenetics_ENCFF757KQY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF017FXS ENCSR452BSJ + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 527 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/20c4f6dc-5f99-4b57-a44a-c3862b436d17/ENCFF017FXS.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR452BSJ + strand\ track wgEncodeReg4RnaSeq_ENCFF017FXS\ type bigWig\ visibility full\ encTfChipPkENCFF519CXF K562 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF519CXF) 0 527 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF519CXF)\ parent encTfChipPk off\ shortLabel K562 CTCF 2\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF519CXF\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward 0 527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward 1 527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ ENCFF972ZHA ENCFF972ZHA bigWig Tibial artery, male adult (37 years): (4) H3K27ac, ENCFF972ZHA 2 528 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF972ZHA.bw\ color 255,205,0\ longLabel Tibial artery, male adult (37 years): (4) H3K27ac, ENCFF972ZHA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 154.3\ shortLabel ENCFF972ZHA\ subGroups organ=blood_vessel view=H3K27ac_view simpleBiosample=tibial_artery-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF972ZHA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF191NFH ENCSR000BSZ Peak bigBed 5 Ishikawa ZBTB7A peaks 4 528 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f3954f91-3ace-4b1e-a25d-49b4e14ed158/ENCFF191NFH.bigBed\ labelFields none\ longLabel Ishikawa ZBTB7A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF191NFH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF573NKX ENCSR000EMU Signal bigWig H1 DNase signal 2 528 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/f0e65c42-1c38-4e35-af0f-1f54d3dcf9b9/ENCFF573NKX.bigWig\ color 6,218,147\ longLabel H1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMU Signal\ track wgEncodeReg4Epigenetics_ENCFF573NKX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF016OSN ENCSR452BSJ - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 528 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/90225527-e504-4f0b-8b46-380e855368c2/ENCFF016OSN.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR452BSJ - strand\ track wgEncodeReg4RnaSeq_ENCFF016OSN\ type bigWig\ visibility full\ encTfChipPkENCFF119XFJ K562 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF119XFJ) 0 528 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF119XFJ)\ parent encTfChipPk off\ shortLabel K562 CTCF 3\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF119XFJ\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse 0 528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse 1 528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%208%29.CNhs13164.12389-131F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep2 (MM XIV - 8)_CNhs13164_12389-131F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12389-131F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep2MMXIV8_CNhs13164_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12389-131F4\ urlLabel FANTOM5 Details:\ ENCFF441MGU ENCFF441MGU bigWig Osteocyte, female embryo (5 days): (4) H3K27ac, ENCFF441MGU 2 529 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF441MGU.bw\ color 255,205,0\ longLabel Osteocyte, female embryo (5 days): (4) H3K27ac, ENCFF441MGU\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 119.3\ shortLabel ENCFF441MGU\ subGroups organ=bone view=H3K27ac_view simpleBiosample=osteocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF441MGU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF233AKY ENCSR000BSZ Signal bigWig Ishikawa ZBTB7A ENCSR000BSZ signal 2 529 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/572f9112-b491-4b0a-bb5f-9b9f77ad8727/ENCFF233AKY.bigWig\ color 186,111,165\ longLabel Ishikawa ZBTB7A ENCSR000BSZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BSZ Signal\ track wgEncodeReg4TfChip_ENCFF233AKY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF396HTD ENCSR000EMV Peak bigBed 5 Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days DNase peak 4 529 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/0292d61f-05c4-40f7-a254-dcc1018f6fe4/ENCFF396HTD.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMV Peak\ track wgEncodeReg4Epigenetics_ENCFF396HTD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF790EBY ENCSR454GQC + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 529 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/e2221ff3-fc61-48ea-b414-bc76f6cd1e7b/ENCFF790EBY.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR454GQC + strand\ track wgEncodeReg4RnaSeq_ENCFF790EBY\ type bigWig\ visibility full\ encTfChipPkENCFF396BZQ K562 CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF396BZQ) 0 529 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in K562 from ENCODE 3 (ENCFF396BZQ)\ parent encTfChipPk off\ shortLabel K562 CTCF 4\ subGroups cellType=K562 factor=CTCF\ track encTfChipPkENCFF396BZQ\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward 0 529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward 1 529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ ENCFF900UMO ENCFF900UMO bigWig NCI-H929: (4) H3K27ac, ENCFF900UMO 2 530 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF900UMO.bw\ color 255,205,0\ longLabel NCI-H929: (4) H3K27ac, ENCFF900UMO\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 116.3\ shortLabel ENCFF900UMO\ subGroups organ=bone_marrow view=H3K27ac_view simpleBiosample=NCI-H929 biosampleType=cell_line donor=ENCDO220OYR dataType=typeH3k27ac\ track ENCFF900UMO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF871YHY ENCSR000BTA Peak bigBed 5 SK-N-SH ELF1 peaks 4 530 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/3c1f6fe8-79ba-44e5-99fd-c0e38ddba0a7/ENCFF871YHY.bigBed\ labelFields none\ longLabel SK-N-SH ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF871YHY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF285XVJ ENCSR000EMV Signal bigWig Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days DNase signal 2 530 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/824fd921-3958-4961-ab07-d278ca842595/ENCFF285XVJ.bigWig\ color 6,218,147\ longLabel Cardiac myoblast originated from H7 treated with 10 ng/mL Bone morphogenetic protein 4 for 9 days, 5 ng/mL Fibroblast growth factor 2 for 9 days, 6 ng/mL Activin A for 9 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMV Signal\ track wgEncodeReg4Epigenetics_ENCFF285XVJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF716BAI ENCSR454GQC - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 530 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/a6ccbed0-f76d-4ceb-b0d8-7ad13619f10f/ENCFF716BAI.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR454GQC - strand\ track wgEncodeReg4RnaSeq_ENCFF716BAI\ type bigWig\ visibility full\ encTfChipPkENCFF556HMX K562 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in K562 from ENCODE 3 (ENCFF556HMX) 0 530 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in K562 from ENCODE 3 (ENCFF556HMX)\ parent encTfChipPk off\ shortLabel K562 CUX1\ subGroups cellType=K562 factor=CUX1\ track encTfChipPkENCFF556HMX\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_rev LymphaticEndothelialCellsToVegfc_02hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse 0 530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_rev LymphaticEndothelialCellsToVegfc_02hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse 1 530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%208%29.CNhs13283.12511-133A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr00min, biol_rep3 (MM XXII - 8)_CNhs13283_12511-133A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12511-133A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr00minBiolRep3MMXXII8_CNhs13283_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12511-133A9\ urlLabel FANTOM5 Details:\ ENCFF262UEH ENCFF262UEH bigWig SK-N-SH: (4) H3K27ac, ENCFF262UEH 2 531 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF262UEH.bw\ color 255,205,0\ longLabel SK-N-SH: (4) H3K27ac, ENCFF262UEH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 138.3\ shortLabel ENCFF262UEH\ subGroups organ=brain view=H3K27ac_view simpleBiosample=SK-N-SH biosampleType=cell_line donor=ENCDO000ABD dataType=typeH3k27ac\ track ENCFF262UEH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF473ESQ ENCSR000BTA Signal bigWig SK-N-SH ELF1 ENCSR000BTA signal 2 531 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/3d475c51-2e16-4c30-9623-1fb60d60f2a0/ENCFF473ESQ.bigWig\ color 155,155,18\ longLabel SK-N-SH ELF1 ENCSR000BTA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTA Signal\ track wgEncodeReg4TfChip_ENCFF473ESQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF215CRS ENCSR000EMW Peak bigBed 5 Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days DNase peak 4 531 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/88b173ce-8433-4c66-880f-4c859b9c20a6/ENCFF215CRS.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMW Peak\ track wgEncodeReg4Epigenetics_ENCFF215CRS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF709ALI ENCSR454MWR + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 531 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/b0084050-3bf5-41d3-bfde-a04e319d76a2/ENCFF709ALI.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR454MWR + strand\ track wgEncodeReg4RnaSeq_ENCFF709ALI\ type bigWig\ visibility full\ encTfChipPkENCFF870LJV K562 DACH1 narrowPeak Transcription Factor ChIP-seq Peaks of DACH1 in K562 from ENCODE 3 (ENCFF870LJV) 0 531 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DACH1 in K562 from ENCODE 3 (ENCFF870LJV)\ parent encTfChipPk off\ shortLabel K562 DACH1\ subGroups cellType=K562 factor=DACH1\ track encTfChipPkENCFF870LJV\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward 0 531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward 1 531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ ENCFF618RAO ENCFF618RAO bigWig Neural progenitor cell, female embryo (5 days): (4) H3K27ac, ENCFF618RAO 2 532 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF618RAO.bw\ color 255,205,0\ longLabel Neural progenitor cell, female embryo (5 days): (4) H3K27ac, ENCFF618RAO\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 117.3\ shortLabel ENCFF618RAO\ subGroups organ=brain view=H3K27ac_view simpleBiosample=neural_progenitor_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF618RAO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF404RGX ENCSR000BTB Peak bigBed 5 SK-N-SH FOXM1 peaks 4 532 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/91d1accc-9667-4134-9598-0da7849b2daa/ENCFF404RGX.bigBed\ labelFields none\ longLabel SK-N-SH FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF404RGX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF516JHB ENCSR000EMW Signal bigWig Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days DNase signal 2 532 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/b3b8566d-3874-4b26-90ce-cdd3a6a2a1f8/ENCFF516JHB.bigWig\ color 6,218,147\ longLabel Cardiovascular progenitor cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 5 days, 10 ng/mL Bone morphogenetic protein 4 for 5 days, 6 ng/mL Activin A for 5 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMW Signal\ track wgEncodeReg4Epigenetics_ENCFF516JHB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF733OMD ENCSR454MWR - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 532 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/9281f9f8-a602-4e10-8c3d-8ce0df94fbb7/ENCFF733OMD.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR454MWR - strand\ track wgEncodeReg4RnaSeq_ENCFF733OMD\ type bigWig\ visibility full\ encTfChipPkENCFF532HCE K562 DEAF1 narrowPeak Transcription Factor ChIP-seq Peaks of DEAF1 in K562 from ENCODE 3 (ENCFF532HCE) 0 532 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DEAF1 in K562 from ENCODE 3 (ENCFF532HCE)\ parent encTfChipPk off\ shortLabel K562 DEAF1\ subGroups cellType=K562 factor=DEAF1\ track encTfChipPkENCFF532HCE\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse 0 532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse 1 532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%209%29.CNhs13107.12268-130A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep1 (MM XIX - 9)_CNhs13107_12268-130A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12268-130A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep1MMXIX9_CNhs13107_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12268-130A9\ urlLabel FANTOM5 Details:\ ENCFF118OBT ENCFF118OBT bigWig Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (4) H3K27ac, ENCFF118OBT 2 533 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF118OBT.bw\ color 255,205,0\ longLabel Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (4) H3K27ac, ENCFF118OBT\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 33.3\ shortLabel ENCFF118OBT\ subGroups organ=brain view=H3K27ac_view simpleBiosample=glutamatergic_neuron-_male_adult__53_years__male_adult__53_years__nuclear_fraction biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k27ac\ track ENCFF118OBT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF139AWF ENCSR000BTB Signal bigWig SK-N-SH FOXM1 ENCSR000BTB signal 2 533 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ee369366-56cd-4c34-bb1b-060352b06a8b/ENCFF139AWF.bigWig\ color 155,155,18\ longLabel SK-N-SH FOXM1 ENCSR000BTB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTB Signal\ track wgEncodeReg4TfChip_ENCFF139AWF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF729EKZ ENCSR000EMX Peak bigBed 5 Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days DNase peak 4 533 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/250c2c61-b8eb-44a3-92d5-911d2412ffcb/ENCFF729EKZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMX Peak\ track wgEncodeReg4Epigenetics_ENCFF729EKZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF263KEJ ENCSR457ENP + strand bigWig Right atrium auricular region tissue female adult (51 years) + strand total RNA-seq signal 2 533 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/9d8b51a4-4f22-46cc-81a6-c96c7ce4e778/ENCFF263KEJ.bigWig\ color 116,50,165\ longLabel Right atrium auricular region tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq on\ shortLabel ENCSR457ENP + strand\ track wgEncodeReg4RnaSeq_ENCFF263KEJ\ type bigWig\ visibility full\ encTfChipPkENCFF549TVW K562 DNMT1 narrowPeak Transcription Factor ChIP-seq Peaks of DNMT1 in K562 from ENCODE 3 (ENCFF549TVW) 0 533 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DNMT1 in K562 from ENCODE 3 (ENCFF549TVW)\ parent encTfChipPk off\ shortLabel K562 DNMT1\ subGroups cellType=K562 factor=DNMT1\ track encTfChipPkENCFF549TVW\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward 0 533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward 1 533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ ENCFF435NQW ENCFF435NQW bigWig Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (4) H3K27ac, ENCFF435NQW 2 534 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF435NQW.bw\ color 255,205,0\ longLabel Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (4) H3K27ac, ENCFF435NQW\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 12.3\ shortLabel ENCFF435NQW\ subGroups organ=brain view=H3K27ac_view simpleBiosample=bipolar_neuron__treated_-_male_adult__53_years__treated_with_0_5_ug_mL_doxycycline_hyclate_for_4_days biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k27ac\ track ENCFF435NQW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF550XVR ENCSR000BTC Peak bigBed 5 A549 E2F6 peaks 4 534 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c4609d81-5cdc-4d6c-ac30-b2427fe68d26/ENCFF550XVR.bigBed\ labelFields none\ longLabel A549 E2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF550XVR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF220VQO ENCSR000EMX Signal bigWig Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days DNase signal 2 534 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/ec048e00-6374-4e64-a99c-aae9969b8f03/ENCFF220VQO.bigWig\ color 6,218,147\ longLabel Mesodermal cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 2 days, 6 ng/mL Activin A for 2 days, 10 ng/mL Bone morphogenetic protein 4 for 2 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMX Signal\ track wgEncodeReg4Epigenetics_ENCFF220VQO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF884LKT ENCSR457ENP - strand bigWig Right atrium auricular region tissue female adult (51 years) - strand total RNA-seq signal 2 534 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/7829e2c4-8c22-4a7e-86e1-475abad08123/ENCFF884LKT.bigWig\ color 116,50,165\ longLabel Right atrium auricular region tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq on\ shortLabel ENCSR457ENP - strand\ track wgEncodeReg4RnaSeq_ENCFF884LKT\ type bigWig\ visibility full\ encTfChipPkENCFF537VKZ K562 DPF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF537VKZ) 0 534 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF537VKZ)\ parent encTfChipPk off\ shortLabel K562 DPF2 1\ subGroups cellType=K562 factor=DPF2\ track encTfChipPkENCFF537VKZ\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse 0 534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse 1 534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%209%29.CNhs13165.12390-131F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep2 (MM XIV - 9)_CNhs13165_12390-131F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12390-131F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep2MMXIV9_CNhs13165_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12390-131F5\ urlLabel FANTOM5 Details:\ ENCFF751GCN ENCFF751GCN bigWig Astrocyte, male adult (53 years): (4) H3K27ac, ENCFF751GCN 2 535 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF751GCN.bw\ color 255,205,0\ longLabel Astrocyte, male adult (53 years): (4) H3K27ac, ENCFF751GCN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 11.3\ shortLabel ENCFF751GCN\ subGroups organ=brain view=H3K27ac_view simpleBiosample=astrocyte-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k27ac\ track ENCFF751GCN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF190MLK ENCSR000BTC Signal bigWig A549 E2F6 ENCSR000BTC signal 2 535 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6298ddb0-2305-4c31-ad64-7927136b5777/ENCFF190MLK.bigWig\ color 130,163,45\ longLabel A549 E2F6 ENCSR000BTC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTC Signal\ track wgEncodeReg4TfChip_ENCFF190MLK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF041APQ ENCSR000EMY Peak bigBed 5 Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days DNase peak 4 535 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/3992e626-2d0d-45b3-aed2-1f167c8067b5/ENCFF041APQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMY Peak\ track wgEncodeReg4Epigenetics_ENCFF041APQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF286TKQ ENCSR458FZP + strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days + strand total RNA-seq signal 2 535 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/13bce379-1f15-40d1-9350-18cc07d319cf/ENCFF286TKQ.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR458FZP + strand\ track wgEncodeReg4RnaSeq_ENCFF286TKQ\ type bigWig\ visibility full\ encTfChipPkENCFF217ZTP K562 DPF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF217ZTP) 0 535 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in K562 from ENCODE 3 (ENCFF217ZTP)\ parent encTfChipPk off\ shortLabel K562 DPF2 2\ subGroups cellType=K562 factor=DPF2\ track encTfChipPkENCFF217ZTP\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward 0 535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_fwd LymphaticEndothelialCellsToVegfc_02hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward 1 535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ ENCFF643ZMC ENCFF643ZMC bigWig Astrocyte: (4) H3K27ac, ENCFF643ZMC 2 536 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF643ZMC.bw\ color 255,205,0\ longLabel Astrocyte: (4) H3K27ac, ENCFF643ZMC\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 10.3\ shortLabel ENCFF643ZMC\ subGroups organ=brain view=H3K27ac_view simpleBiosample=astrocyte biosampleType=primary_cell donor=ENCDO916IIE dataType=typeH3k27ac\ track ENCFF643ZMC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF992QXM ENCSR000BTD Peak bigBed 5 Ishikawa SRF peaks 4 536 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f162f81d-7aac-45cb-9e1f-16ab40a6fd71/ENCFF992QXM.bigBed\ labelFields none\ longLabel Ishikawa SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF992QXM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF146ETF ENCSR000EMY Signal bigWig Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days DNase signal 2 536 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/743b3ceb-9264-483b-9206-6da779e97647/ENCFF146ETF.bigWig\ color 6,218,147\ longLabel Cardiac muscle cell originated from H7 treated with 5 ng/mL Fibroblast growth factor 2 for 14 days, 10 ng/mL Bone morphogenetic protein 4 for 14 days, 6 ng/mL Activin A for 14 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMY Signal\ track wgEncodeReg4Epigenetics_ENCFF146ETF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF467RFT ENCSR458FZP - strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days - strand total RNA-seq signal 2 536 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/2ec99de9-9d7a-42cd-89d0-b6fc55c45793/ENCFF467RFT.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours, 10 ng/mL Interleukin-2 for 5 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR458FZP - strand\ track wgEncodeReg4RnaSeq_ENCFF467RFT\ type bigWig\ visibility full\ encTfChipPkENCFF134JLR K562 E2F1 1 narrowPeak Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF134JLR) 0 536 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF134JLR)\ parent encTfChipPk off\ shortLabel K562 E2F1 1\ subGroups cellType=K562 factor=E2F1\ track encTfChipPkENCFF134JLR\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_rev LymphaticEndothelialCellsToVegfc_02hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse 0 536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_rev LymphaticEndothelialCellsToVegfc_02hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse 1 536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2002hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%209%29.CNhs13284.12512-133B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 02hr30min, biol_rep3 (MM XXII - 9)_CNhs13284_12512-133B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12512-133B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC02hr30minBiolRep3MMXXII9_CNhs13284_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12512-133B1\ urlLabel FANTOM5 Details:\ ENCFF703DMY ENCFF703DMY bigWig Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF703DMY 2 537 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF703DMY.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF703DMY\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 106.3\ shortLabel ENCFF703DMY\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO006DAA dataType=typeH3k27ac\ track ENCFF703DMY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF167FVY ENCSR000BTD Signal bigWig Ishikawa SRF ENCSR000BTD signal 2 537 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/2d07be53-c542-4b02-bc4a-e533c369bf53/ENCFF167FVY.bigWig\ color 186,111,165\ longLabel Ishikawa SRF ENCSR000BTD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTD Signal\ track wgEncodeReg4TfChip_ENCFF167FVY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF662MIT ENCSR000EMZ Peak bigBed 5 H7 DNase peak 4 537 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/910e3f03-c2d3-414a-aba2-66b969aa2db9/ENCFF662MIT.bigBed\ color 6,218,147\ labelFields none\ longLabel H7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMZ Peak\ track wgEncodeReg4Epigenetics_ENCFF662MIT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF318EJE ENCSR460YCS + strand bigWig Lower leg skin tissue male adult (54 years) + strand total RNA-seq signal 2 537 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/0febe6a1-979f-4888-801d-7d6070b5eaee/ENCFF318EJE.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR460YCS + strand\ track wgEncodeReg4RnaSeq_ENCFF318EJE\ type bigWig\ visibility full\ encTfChipPkENCFF445VTT K562 E2F1 2 narrowPeak Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF445VTT) 0 537 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F1 in K562 from ENCODE 3 (ENCFF445VTT)\ parent encTfChipPk off\ shortLabel K562 E2F1 2\ subGroups cellType=K562 factor=E2F1\ track encTfChipPkENCFF445VTT\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward 0 537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward 1 537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ ENCFF484YUA ENCFF484YUA bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF484YUA 2 538 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF484YUA.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF484YUA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 86.3\ shortLabel ENCFF484YUA\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO033BMB dataType=typeH3k27ac\ track ENCFF484YUA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF540ZXN ENCSR000BTE Peak bigBed 5 HCT116 FOSL1 peaks 4 538 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4e096466-a9e9-4981-91c6-4e41a76e6f9f/ENCFF540ZXN.bigBed\ labelFields none\ longLabel HCT116 FOSL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF540ZXN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF631PJY ENCSR000EMZ Signal bigWig H7 DNase signal 2 538 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/873a0251-2953-4d78-8d76-3969966524d8/ENCFF631PJY.bigWig\ color 6,218,147\ longLabel H7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EMZ Signal\ track wgEncodeReg4Epigenetics_ENCFF631PJY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF097TXJ ENCSR460YCS - strand bigWig Lower leg skin tissue male adult (54 years) - strand total RNA-seq signal 2 538 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b5049ce1-e8c2-41c7-84d6-751aa74e3b44/ENCFF097TXJ.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR460YCS - strand\ track wgEncodeReg4RnaSeq_ENCFF097TXJ\ type bigWig\ visibility full\ encTfChipPkENCFF533GSH K562 E2F6 narrowPeak Transcription Factor ChIP-seq Peaks of E2F6 in K562 from ENCODE 3 (ENCFF533GSH) 0 538 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F6 in K562 from ENCODE 3 (ENCFF533GSH)\ parent encTfChipPk off\ shortLabel K562 E2F6\ subGroups cellType=K562 factor=E2F6\ track encTfChipPkENCFF533GSH\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse 0 538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse 1 538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep1%20%28MM%20XIX%20-%2010%29.CNhs13108.12269-130B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep1 (MM XIX - 10)_CNhs13108_12269-130B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12269-130B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep1MMXIX10_CNhs13108_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12269-130B1\ urlLabel FANTOM5 Details:\ ENCFF336MIJ ENCFF336MIJ bigWig Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (4) H3K27ac, ENCFF336MIJ 2 539 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF336MIJ.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (4) H3K27ac, ENCFF336MIJ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 71.3\ shortLabel ENCFF336MIJ\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__88_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO070VNS dataType=typeH3k27ac\ track ENCFF336MIJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF045ROE ENCSR000BTE Signal bigWig HCT116 FOSL1 ENCSR000BTE signal 2 539 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/35e019cc-fa65-4d95-bd09-4f44f151523e/ENCFF045ROE.bigWig\ color 86,86,36\ longLabel HCT116 FOSL1 ENCSR000BTE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTE Signal\ track wgEncodeReg4TfChip_ENCFF045ROE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF707ZYZ ENCSR000ENA Peak bigBed 5 Astrocyte of the hippocampus DNase peak 4 539 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/27a19cc4-25a6-46c7-aca3-ef0a18a6c791/ENCFF707ZYZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Astrocyte of the hippocampus DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENA Peak\ track wgEncodeReg4Epigenetics_ENCFF707ZYZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF992XOR ENCSR464VSR + strand bigWig Placenta tissue male embryo + strand total RNA-seq signal 2 539 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/f1e2e40e-47a0-4b48-8826-de3cfdaa14f0/ENCFF992XOR.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR464VSR + strand\ track wgEncodeReg4RnaSeq_ENCFF992XOR\ type bigWig\ visibility full\ encTfChipPkENCFF013EHI K562 E2F7 narrowPeak Transcription Factor ChIP-seq Peaks of E2F7 in K562 from ENCODE 3 (ENCFF013EHI) 0 539 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F7 in K562 from ENCODE 3 (ENCFF013EHI)\ parent encTfChipPk off\ shortLabel K562 E2F7\ subGroups cellType=K562 factor=E2F7\ track encTfChipPkENCFF013EHI\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward 0 539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward 1 539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ ENCFF224LYA ENCFF224LYA bigWig Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (4) H3K27ac, ENCFF224LYA 2 540 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF224LYA.bw\ color 255,205,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (4) H3K27ac, ENCFF224LYA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 77.3\ shortLabel ENCFF224LYA\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__81_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO077CCP dataType=typeH3k27ac\ track ENCFF224LYA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF589LOF ENCSR000BTF Peak bigBed 5 HL-60 REST peaks 4 540 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6dca0188-7c65-4cb5-b9e5-f877cd55d3f4/ENCFF589LOF.bigBed\ labelFields none\ longLabel HL-60 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF589LOF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF947PKH ENCSR000ENA Signal bigWig Astrocyte of the hippocampus DNase signal 2 540 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/ccbe8542-f765-4488-92df-bd4c189d5127/ENCFF947PKH.bigWig\ color 6,218,147\ longLabel Astrocyte of the hippocampus DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENA Signal\ track wgEncodeReg4Epigenetics_ENCFF947PKH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF991YML ENCSR464VSR - strand bigWig Placenta tissue male embryo - strand total RNA-seq signal 2 540 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/cc230f76-9501-4ed3-9853-76ea62afe633/ENCFF991YML.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR464VSR - strand\ track wgEncodeReg4RnaSeq_ENCFF991YML\ type bigWig\ visibility full\ encTfChipPkENCFF171WWF K562 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in K562 from ENCODE 3 (ENCFF171WWF) 0 540 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E2F8 in K562 from ENCODE 3 (ENCFF171WWF)\ parent encTfChipPk off\ shortLabel K562 E2F8\ subGroups cellType=K562 factor=E2F8\ track encTfChipPkENCFF171WWF\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse 0 540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse 1 540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep2%20%28MM%20XIV%20-%2010%29.CNhs13166.12391-131F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep2 (MM XIV - 10)_CNhs13166_12391-131F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12391-131F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep2MMXIV10_CNhs13166_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12391-131F6\ urlLabel FANTOM5 Details:\ ENCFF194KAZ ENCFF194KAZ bigWig Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (4) H3K27ac, ENCFF194KAZ 2 541 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF194KAZ.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (4) H3K27ac, ENCFF194KAZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 69.3\ shortLabel ENCFF194KAZ\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__85_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO080EZF dataType=typeH3k27ac\ track ENCFF194KAZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF333TOH ENCSR000BTF Signal bigWig HL-60 REST ENCSR000BTF signal 2 541 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/10349c4b-e27d-4b92-bec8-b5473fd8c227/ENCFF333TOH.bigWig\ color 254,75,173\ longLabel HL-60 REST ENCSR000BTF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTF Signal\ track wgEncodeReg4TfChip_ENCFF333TOH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF858YJD ENCSR000ENB Signal bigWig Astrocyte of the spinal cord DNase signal 2 541 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/a5090715-de5d-48b4-868e-6aeffc9e8b75/ENCFF858YJD.bigWig\ color 6,218,147\ longLabel Astrocyte of the spinal cord DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENB Signal\ track wgEncodeReg4Epigenetics_ENCFF858YJD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF144BNP ENCSR469WPG + strand bigWig Caco-2 + strand total RNA-seq signal 2 541 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/dc37b09b-738b-4ce9-ba8a-52d5c75ea5fe/ENCFF144BNP.bigWig\ color 86,86,36\ longLabel Caco-2 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR469WPG + strand\ track wgEncodeReg4RnaSeq_ENCFF144BNP\ type bigWig\ visibility full\ encTfChipPkENCFF752KNU K562 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in K562 from ENCODE 3 (ENCFF752KNU) 0 541 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of E4F1 in K562 from ENCODE 3 (ENCFF752KNU)\ parent encTfChipPk off\ shortLabel K562 E4F1\ subGroups cellType=K562 factor=E4F1\ track encTfChipPkENCFF752KNU\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward 0 541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr00minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward 1 541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ ENCFF480FCW ENCFF480FCW bigWig Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (4) H3K27ac, ENCFF480FCW 2 542 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF480FCW.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (4) H3K27ac, ENCFF480FCW\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 68.3\ shortLabel ENCFF480FCW\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__81_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO097MEH dataType=typeH3k27ac\ track ENCFF480FCW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF755TJJ ENCSR000BTG Peak bigBed 5 SK-N-SH GABPA peaks 4 542 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/ab0befd3-fcb0-40cf-86ee-4f77472bd7a8/ENCFF755TJJ.bigBed\ labelFields none\ longLabel SK-N-SH GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF755TJJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF945CET ENCSR000ENC Peak bigBed 5 Astrocyte of the cerebellum DNase peak 4 542 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/48f0d795-aa40-41ef-b79c-c47a79cb96d0/ENCFF945CET.bigBed\ color 6,218,147\ labelFields none\ longLabel Astrocyte of the cerebellum DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENC Peak\ track wgEncodeReg4Epigenetics_ENCFF945CET\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF147TAN ENCSR469WPG - strand bigWig Caco-2 - strand total RNA-seq signal 2 542 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/2b03b79c-a7d1-49b0-aaff-7d5b5ac705c3/ENCFF147TAN.bigWig\ color 86,86,36\ longLabel Caco-2 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR469WPG - strand\ track wgEncodeReg4RnaSeq_ENCFF147TAN\ type bigWig\ visibility full\ encTfChipPkENCFF375RDB K562 EGR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF375RDB) 0 542 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF375RDB)\ parent encTfChipPk off\ shortLabel K562 EGR1 1\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF375RDB\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_rev LymphaticEndothelialCellsToVegfc_03hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse 0 542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_rev LymphaticEndothelialCellsToVegfc_03hr00minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse 1 542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr00min%2c%20biol_rep3%20%28MM%20XXII%20-%2010%29.CNhs13285.12513-133B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr00min, biol_rep3 (MM XXII - 10)_CNhs13285_12513-133B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12513-133B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr00minBiolRep3MMXXII10_CNhs13285_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12513-133B2\ urlLabel FANTOM5 Details:\ ENCFF649LLS ENCFF649LLS bigWig Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF649LLS 2 543 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF649LLS.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF649LLS\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 105.3\ shortLabel ENCFF649LLS\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO101GPB dataType=typeH3k27ac\ track ENCFF649LLS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF012OQH ENCSR000BTG Signal bigWig SK-N-SH GABPA ENCSR000BTG signal 2 543 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/a9425c65-83c4-4fe8-a3c4-320fd23cf61a/ENCFF012OQH.bigWig\ color 155,155,18\ longLabel SK-N-SH GABPA ENCSR000BTG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTG Signal\ track wgEncodeReg4TfChip_ENCFF012OQH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF713HCD ENCSR000ENC Signal bigWig Astrocyte of the cerebellum DNase signal 2 543 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/59e44884-4abf-46cb-b32d-3d0549790c1b/ENCFF713HCD.bigWig\ color 6,218,147\ longLabel Astrocyte of the cerebellum DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENC Signal\ track wgEncodeReg4Epigenetics_ENCFF713HCD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF561TMR ENCSR471RUK + strand bigWig Stomach tissue male adult (37 years) + strand total RNA-seq signal 2 543 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/7f70543a-73fe-4964-a21f-c85b200ad173/ENCFF561TMR.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR471RUK + strand\ track wgEncodeReg4RnaSeq_ENCFF561TMR\ type bigWig\ visibility full\ encTfChipPkENCFF175VSS K562 EGR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF175VSS) 0 543 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF175VSS)\ parent encTfChipPk off\ shortLabel K562 EGR1 2\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF175VSS\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward 0 543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward 1 543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ ENCFF461GFM ENCFF461GFM bigWig Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (4) H3K27ac, ENCFF461GFM 2 544 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF461GFM.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (4) H3K27ac, ENCFF461GFM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 83.3\ shortLabel ENCFF461GFM\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__88_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO151OJB dataType=typeH3k27ac\ track ENCFF461GFM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF040SSB ENCSR000BTH Peak bigBed 5 SK-N-SH GATA3 peaks 4 544 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d8dbb785-1e97-47b2-bc37-7b5d3f1be30b/ENCFF040SSB.bigBed\ labelFields none\ longLabel SK-N-SH GATA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF040SSB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF011DYC ENCSR000END Peak bigBed 5 Amniotic epithelial cell DNase peak 4 544 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/94e51e74-032f-4787-8465-e3ff9c46a444/ENCFF011DYC.bigBed\ color 6,218,147\ labelFields none\ longLabel Amniotic epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000END Peak\ track wgEncodeReg4Epigenetics_ENCFF011DYC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF331GDT ENCSR471RUK - strand bigWig Stomach tissue male adult (37 years) - strand total RNA-seq signal 2 544 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/58d7b31e-7970-43c9-acd7-a081f6b20620/ENCFF331GDT.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR471RUK - strand\ track wgEncodeReg4RnaSeq_ENCFF331GDT\ type bigWig\ visibility full\ encTfChipPkENCFF561OGS K562 EGR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF561OGS) 0 544 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EGR1 in K562 from ENCODE 3 (ENCFF561OGS)\ parent encTfChipPk off\ shortLabel K562 EGR1 3\ subGroups cellType=K562 factor=EGR1\ track encTfChipPkENCFF561OGS\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse 0 544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse 1 544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep1%20%28MM%20XIX%20-%2011%29.CNhs13109.12270-130B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep1 (MM XIX - 11)_CNhs13109_12270-130B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12270-130B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep1MMXIX11_CNhs13109_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12270-130B2\ urlLabel FANTOM5 Details:\ ENCFF238JTO ENCFF238JTO bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF238JTO 2 545 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF238JTO.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF238JTO\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 89.3\ shortLabel ENCFF238JTO\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO153NUY dataType=typeH3k27ac\ track ENCFF238JTO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF344RYH ENCSR000BTH Signal bigWig SK-N-SH GATA3 ENCSR000BTH signal 2 545 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b8c2d46a-b45f-43fa-baa0-f30e9ac48869/ENCFF344RYH.bigWig\ color 155,155,18\ longLabel SK-N-SH GATA3 ENCSR000BTH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTH Signal\ track wgEncodeReg4TfChip_ENCFF344RYH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF720ZBZ ENCSR000END Signal bigWig Amniotic epithelial cell DNase signal 2 545 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/d98b6eb4-7706-4214-ae46-e937d48d8f77/ENCFF720ZBZ.bigWig\ color 6,218,147\ longLabel Amniotic epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000END Signal\ track wgEncodeReg4Epigenetics_ENCFF720ZBZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF291GNY ENCSR473XAP + strand bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) + strand total RNA-seq signal 2 545 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/54c12a5d-9bbc-4e16-aed2-0647fa7ead8d/ENCFF291GNY.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR473XAP + strand\ track wgEncodeReg4RnaSeq_ENCFF291GNY\ type bigWig\ visibility full\ encTfChipPkENCFF682XPD K562 EHMT2 narrowPeak Transcription Factor ChIP-seq Peaks of EHMT2 in K562 from ENCODE 3 (ENCFF682XPD) 0 545 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EHMT2 in K562 from ENCODE 3 (ENCFF682XPD)\ parent encTfChipPk off\ shortLabel K562 EHMT2\ subGroups cellType=K562 factor=EHMT2\ track encTfChipPkENCFF682XPD\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward 0 545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward 1 545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ ENCFF435BRK ENCFF435BRK bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (4) H3K27ac, ENCFF435BRK 2 546 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF435BRK.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (4) H3K27ac, ENCFF435BRK\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 76.3\ shortLabel ENCFF435BRK\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO201EUI dataType=typeH3k27ac\ track ENCFF435BRK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF226FVV ENCSR000BTI Peak bigBed 5 A549 GATA3 peaks 4 546 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/de7e11a1-38e1-48da-9c36-492c2d92355f/ENCFF226FVV.bigBed\ labelFields none\ longLabel A549 GATA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF226FVV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF862HDS ENCSR000ENF Peak bigBed 5 Brain pericyte DNase peak 4 546 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/89ad799f-776b-4f4b-891d-f7d192c33af9/ENCFF862HDS.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain pericyte DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENF Peak\ track wgEncodeReg4Epigenetics_ENCFF862HDS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF255PXJ ENCSR473XAP - strand bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) - strand total RNA-seq signal 2 546 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/e6ff345c-baba-4128-b3f3-475f0f961272/ENCFF255PXJ.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR473XAP - strand\ track wgEncodeReg4RnaSeq_ENCFF255PXJ\ type bigWig\ visibility full\ encTfChipPkENCFF617ZLL K562 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in K562 from ENCODE 3 (ENCFF617ZLL) 0 546 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in K562 from ENCODE 3 (ENCFF617ZLL)\ parent encTfChipPk off\ shortLabel K562 ELF1\ subGroups cellType=K562 factor=ELF1\ track encTfChipPkENCFF617ZLL\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse 0 546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse 1 546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep2%20%28MM%20XIV%20-%2011%29.CNhs13168.12392-131F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep2 (MM XIV - 11)_CNhs13168_12392-131F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12392-131F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep2MMXIV11_CNhs13168_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12392-131F7\ urlLabel FANTOM5 Details:\ ENCFF658QWN ENCFF658QWN bigWig Middle frontal area 46, male adult (87 years): (4) H3K27ac, ENCFF658QWN 2 547 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF658QWN.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (87 years): (4) H3K27ac, ENCFF658QWN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 114.3\ shortLabel ENCFF658QWN\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__87_years_ biosampleType=tissue donor=ENCDO203ASI dataType=typeH3k27ac\ track ENCFF658QWN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF360FLA ENCSR000BTI Signal bigWig A549 GATA3 ENCSR000BTI signal 2 547 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/7c26a373-28a1-4b59-b2c2-71e33064a366/ENCFF360FLA.bigWig\ color 130,163,45\ longLabel A549 GATA3 ENCSR000BTI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTI Signal\ track wgEncodeReg4TfChip_ENCFF360FLA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF866JBL ENCSR000ENF Signal bigWig Brain pericyte DNase signal 2 547 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/47f62dd1-6dad-4524-aeec-a8a27bc49c92/ENCFF866JBL.bigWig\ color 6,218,147\ longLabel Brain pericyte DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENF Signal\ track wgEncodeReg4Epigenetics_ENCFF866JBL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF213LRI ENCSR474TRG + strand bigWig Esophagus squamous epithelium tissue male adult (54 years) + strand total RNA-seq signal 2 547 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/5a1d94ae-504d-46b4-aafc-19fabe1aeee7/ENCFF213LRI.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR474TRG + strand\ track wgEncodeReg4RnaSeq_ENCFF213LRI\ type bigWig\ visibility full\ encTfChipPkENCFF539SXG K562 ELF4 narrowPeak Transcription Factor ChIP-seq Peaks of ELF4 in K562 from ENCODE 3 (ENCFF539SXG) 0 547 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ELF4 in K562 from ENCODE 3 (ENCFF539SXG)\ parent encTfChipPk off\ shortLabel K562 ELF4\ subGroups cellType=K562 factor=ELF4\ track encTfChipPkENCFF539SXG\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward 0 547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_fwd LymphaticEndothelialCellsToVegfc_03hr30minBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward 1 547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ ENCFF694XDN ENCFF694XDN bigWig Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF694XDN 2 548 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF694XDN.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF694XDN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 104.3\ shortLabel ENCFF694XDN\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO218FFZ dataType=typeH3k27ac\ track ENCFF694XDN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF310XGQ ENCSR000BTJ Peak bigBed 5 A549 MAX peaks 4 548 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/8e120447-6fdf-4fc9-bfc4-0a288ab53fa0/ENCFF310XGQ.bigBed\ labelFields none\ longLabel A549 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF310XGQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF436COT ENCSR000ENG Peak bigBed 5 Smooth muscle cell of the brain vasculature female DNase peak 4 548 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/a456e98e-63d4-47a6-9c35-f0e58a50a4ff/ENCFF436COT.bigBed\ color 6,218,147\ labelFields none\ longLabel Smooth muscle cell of the brain vasculature female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENG Peak\ track wgEncodeReg4Epigenetics_ENCFF436COT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF977KXI ENCSR474TRG - strand bigWig Esophagus squamous epithelium tissue male adult (54 years) - strand total RNA-seq signal 2 548 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6de83461-0712-4956-a08d-f67c2287a178/ENCFF977KXI.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR474TRG - strand\ track wgEncodeReg4RnaSeq_ENCFF977KXI\ type bigWig\ visibility full\ encTfChipPkENCFF119SCQ K562 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in K562 from ENCODE 3 (ENCFF119SCQ) 0 548 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in K562 from ENCODE 3 (ENCFF119SCQ)\ parent encTfChipPk off\ shortLabel K562 ELK1\ subGroups cellType=K562 factor=ELK1\ track encTfChipPkENCFF119SCQ\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_rev LymphaticEndothelialCellsToVegfc_03hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse 0 548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_rev LymphaticEndothelialCellsToVegfc_03hr30minBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse 1 548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2003hr30min%2c%20biol_rep3%20%28MM%20XXII%20-%2011%29.CNhs13286.12514-133B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 03hr30min, biol_rep3 (MM XXII - 11)_CNhs13286_12514-133B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12514-133B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC03hr30minBiolRep3MMXXII11_CNhs13286_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12514-133B3\ urlLabel FANTOM5 Details:\ ENCFF014NIB ENCFF014NIB bigWig Middle frontal area 46, female adult (78 years): (4) H3K27ac, ENCFF014NIB 2 549 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF014NIB.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (78 years): (4) H3K27ac, ENCFF014NIB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 94.3\ shortLabel ENCFF014NIB\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__78_years_ biosampleType=tissue donor=ENCDO236YSH dataType=typeH3k27ac\ track ENCFF014NIB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF276UPC ENCSR000BTJ Signal bigWig A549 MAX ENCSR000BTJ signal 2 549 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/5c96e795-04ae-4d3f-94e7-766c16f6a54a/ENCFF276UPC.bigWig\ color 130,163,45\ longLabel A549 MAX ENCSR000BTJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTJ Signal\ track wgEncodeReg4TfChip_ENCFF276UPC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF770JQW ENCSR000ENG Signal bigWig Smooth muscle cell of the brain vasculature female DNase signal 2 549 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/404c85c8-759a-48d4-9044-f9c04b6bf947/ENCFF770JQW.bigWig\ color 6,218,147\ longLabel Smooth muscle cell of the brain vasculature female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENG Signal\ track wgEncodeReg4Epigenetics_ENCFF770JQW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF102TNA ENCSR475KPG + strand bigWig Activated T-helper 1 cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 1 μg/mL 2 549 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/209ff1ad-53bd-471f-9333-6278370d70fe/ENCFF102TNA.bigWig\ color 254,75,173\ longLabel Activated T-helper 1 cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 1 μg/mL Interleukin-4 antibody for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR475KPG + strand\ track wgEncodeReg4RnaSeq_ENCFF102TNA\ type bigWig\ visibility full\ encTfChipPkENCFF755HCK K562 EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in K562 from ENCODE 3 (ENCFF755HCK) 0 549 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EP300 in K562 from ENCODE 3 (ENCFF755HCK)\ parent encTfChipPk off\ shortLabel K562 EP300\ subGroups cellType=K562 factor=EP300\ track encTfChipPkENCFF755HCK\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward 0 549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward 1 549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ ENCFF519CLG ENCFF519CLG bigWig Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF519CLG 2 550 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF519CLG.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (90 or above years): (4) H3K27ac, ENCFF519CLG\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 103.3\ shortLabel ENCFF519CLG\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO250PFZ dataType=typeH3k27ac\ track ENCFF519CLG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF515BEZ ENCSR000BTK Peak bigBed 5 HL-60 GABPA peaks 4 550 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/39f747ed-aadf-44c2-9d95-b6e250d8ed85/ENCFF515BEZ.bigBed\ labelFields none\ longLabel HL-60 GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF515BEZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF548MKL ENCSR000ENH Peak bigBed 5 Cardiac fibroblast DNase peak 4 550 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/0cd59cd8-6276-4446-8c2c-a08bdbeb7947/ENCFF548MKL.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiac fibroblast DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENH Peak\ track wgEncodeReg4Epigenetics_ENCFF548MKL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF006GRG ENCSR475KPG - strand bigWig Activated T-helper 1 cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 1 μg/mL 2 550 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/ea4c90a2-5a0b-4d61-b946-4111ae3b01c4/ENCFF006GRG.bigWig\ color 254,75,173\ longLabel Activated T-helper 1 cell male adult (35 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 30 ng/mL Interleukin-12 subunit beta for 36 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 1 μg/mL Interleukin-4 antibody for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR475KPG - strand\ track wgEncodeReg4RnaSeq_ENCFF006GRG\ type bigWig\ visibility full\ encTfChipPkENCFF225BXA K562 EP400 narrowPeak Transcription Factor ChIP-seq Peaks of EP400 in K562 from ENCODE 3 (ENCFF225BXA) 0 550 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EP400 in K562 from ENCODE 3 (ENCFF225BXA)\ parent encTfChipPk off\ shortLabel K562 EP400\ subGroups cellType=K562 factor=EP400\ track encTfChipPkENCFF225BXA\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse 0 550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse 1 550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep1%20%28MM%20XIX%20-%2012%29.CNhs13110.12271-130B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep1 (MM XIX - 12)_CNhs13110_12271-130B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12271-130B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep1MMXIX12_CNhs13110_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12271-130B3\ urlLabel FANTOM5 Details:\ ENCFF962GLK ENCFF962GLK bigWig Middle frontal area 46, female adult (82 years): (4) H3K27ac, ENCFF962GLK 2 551 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF962GLK.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (82 years): (4) H3K27ac, ENCFF962GLK\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 96.3\ shortLabel ENCFF962GLK\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__82_years_ biosampleType=tissue donor=ENCDO290OPS dataType=typeH3k27ac\ track ENCFF962GLK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF550LIE ENCSR000BTK Signal bigWig HL-60 GABPA ENCSR000BTK signal 2 551 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/b82b6806-f16c-4f3a-8585-00ae48d7f148/ENCFF550LIE.bigWig\ color 254,75,173\ longLabel HL-60 GABPA ENCSR000BTK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTK Signal\ track wgEncodeReg4TfChip_ENCFF550LIE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF424KBD ENCSR000ENH Signal bigWig Cardiac fibroblast DNase signal 2 551 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/13616ba1-4739-4665-99fd-772c9bd2985a/ENCFF424KBD.bigWig\ color 6,218,147\ longLabel Cardiac fibroblast DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENH Signal\ track wgEncodeReg4Epigenetics_ENCFF424KBD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF400CHK ENCSR479MNN + strand bigWig Placenta tissue male embryo + strand total RNA-seq signal 2 551 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/c30bceec-994d-4514-a5f3-e0ad4d1433f1/ENCFF400CHK.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR479MNN + strand\ track wgEncodeReg4RnaSeq_ENCFF400CHK\ type bigWig\ visibility full\ encTfChipPkENCFF592GWM K562 ESRRA narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in K562 from ENCODE 3 (ENCFF592GWM) 0 551 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in K562 from ENCODE 3 (ENCFF592GWM)\ parent encTfChipPk off\ shortLabel K562 ESRRA\ subGroups cellType=K562 factor=ESRRA\ track encTfChipPkENCFF592GWM\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward 0 551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward 1 551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ ENCFF794RDI ENCFF794RDI bigWig Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (4) H3K27ac, ENCFF794RDI 2 552 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF794RDI.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (4) H3K27ac, ENCFF794RDI\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 82.3\ shortLabel ENCFF794RDI\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__87_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO354SJE dataType=typeH3k27ac\ track ENCFF794RDI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF321XKE ENCSR000BTL Peak bigBed 5 HL-60 POLR2AphosphoS5 peaks 4 552 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6f583d10-fe5d-4e6b-a581-9bcbca9196e2/ENCFF321XKE.bigBed\ labelFields none\ longLabel HL-60 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF321XKE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF215WHT ENCSR000ENI Peak bigBed 5 Cardiac fibroblast female adult DNase peak 4 552 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/de966947-1307-4c0e-a70a-8772a027c908/ENCFF215WHT.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiac fibroblast female adult DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENI Peak\ track wgEncodeReg4Epigenetics_ENCFF215WHT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF133ABU ENCSR479MNN - strand bigWig Placenta tissue male embryo - strand total RNA-seq signal 2 552 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/7101fac7-37a8-48aa-82fc-206ae97b993a/ENCFF133ABU.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR479MNN - strand\ track wgEncodeReg4RnaSeq_ENCFF133ABU\ type bigWig\ visibility full\ encTfChipPkENCFF461PRP K562 ETS1 narrowPeak Transcription Factor ChIP-seq Peaks of ETS1 in K562 from ENCODE 3 (ENCFF461PRP) 0 552 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ETS1 in K562 from ENCODE 3 (ENCFF461PRP)\ parent encTfChipPk off\ shortLabel K562 ETS1\ subGroups cellType=K562 factor=ETS1\ track encTfChipPkENCFF461PRP\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse 0 552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse 1 552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep2%20%28MM%20XIV%20-%2012%29.CNhs13169.12393-131F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep2 (MM XIV - 12)_CNhs13169_12393-131F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12393-131F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep2MMXIV12_CNhs13169_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12393-131F8\ urlLabel FANTOM5 Details:\ ENCFF028IBW ENCFF028IBW bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (4) H3K27ac, ENCFF028IBW 2 553 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF028IBW.bw\ color 255,205,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (4) H3K27ac, ENCFF028IBW\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 80.3\ shortLabel ENCFF028IBW\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO359XWR dataType=typeH3k27ac\ track ENCFF028IBW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF774ZIK ENCSR000BTL Signal bigWig HL-60 POLR2AphosphoS5 ENCSR000BTL signal 2 553 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6fd1ccee-cc27-40d6-a790-8262fa443daf/ENCFF774ZIK.bigWig\ color 254,75,173\ longLabel HL-60 POLR2AphosphoS5 ENCSR000BTL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTL Signal\ track wgEncodeReg4TfChip_ENCFF774ZIK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF258OVM ENCSR000ENI Signal bigWig Cardiac fibroblast female adult DNase signal 2 553 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/572edfc7-65de-4d2f-82fa-3eccec39ad3b/ENCFF258OVM.bigWig\ color 6,218,147\ longLabel Cardiac fibroblast female adult DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENI Signal\ track wgEncodeReg4Epigenetics_ENCFF258OVM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF685FCX ENCSR480SLD + strand bigWig Suprapubic skin tissue female adult (51 years) + strand total RNA-seq signal 2 553 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/e0bcc635-095f-460c-b4d7-6da0c236f321/ENCFF685FCX.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR480SLD + strand\ track wgEncodeReg4RnaSeq_ENCFF685FCX\ type bigWig\ visibility full\ encTfChipPkENCFF426GSY K562 ETV6 1 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF426GSY) 0 553 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF426GSY)\ parent encTfChipPk off\ shortLabel K562 ETV6 1\ subGroups cellType=K562 factor=ETV6\ track encTfChipPkENCFF426GSY\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_fwd LymphaticEndothelialCellsToVegfc_04hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward 0 553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_fwd LymphaticEndothelialCellsToVegfc_04hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward 1 553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ ENCFF272DJL ENCFF272DJL bigWig Middle frontal area 46, male adult (82 years): (4) H3K27ac, ENCFF272DJL 2 554 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF272DJL.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (82 years): (4) H3K27ac, ENCFF272DJL\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 109.3\ shortLabel ENCFF272DJL\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__82_years_ biosampleType=tissue donor=ENCDO407UTA dataType=typeH3k27ac\ track ENCFF272DJL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF479OHI ENCSR000BTM Peak bigBed 5 HepG2 MAX peaks 4 554 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/7a5dda37-c13b-47f9-897f-1f94c47070a3/ENCFF479OHI.bigBed\ labelFields none\ longLabel HepG2 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF479OHI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF724UXE ENCSR000ENJ Signal bigWig Cardiac muscle cell DNase signal 2 554 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/526f397a-5f84-4c87-93b8-ecd454aaa0a9/ENCFF724UXE.bigWig\ color 6,218,147\ longLabel Cardiac muscle cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENJ Signal\ track wgEncodeReg4Epigenetics_ENCFF724UXE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF862GSE ENCSR480SLD - strand bigWig Suprapubic skin tissue female adult (51 years) - strand total RNA-seq signal 2 554 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/d065ec47-1169-44ea-821d-32c29fddf329/ENCFF862GSE.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR480SLD - strand\ track wgEncodeReg4RnaSeq_ENCFF862GSE\ type bigWig\ visibility full\ encTfChipPkENCFF658SGJ K562 ETV6 2 narrowPeak Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF658SGJ) 0 554 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ETV6 in K562 from ENCODE 3 (ENCFF658SGJ)\ parent encTfChipPk off\ shortLabel K562 ETV6 2\ subGroups cellType=K562 factor=ETV6\ track encTfChipPkENCFF658SGJ\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_rev LymphaticEndothelialCellsToVegfc_04hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse 0 554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_rev LymphaticEndothelialCellsToVegfc_04hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse 1 554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2004hr%2c%20biol_rep3%20%28MM%20XXII%20-%2012%29.CNhs13287.12515-133B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 04hr, biol_rep3 (MM XXII - 12)_CNhs13287_12515-133B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12515-133B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_04hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC04hrBiolRep3MMXXII12_CNhs13287_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12515-133B4\ urlLabel FANTOM5 Details:\ ENCFF224JSW ENCFF224JSW bigWig Middle frontal area 46, female adult (87 years): (4) H3K27ac, ENCFF224JSW 2 555 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF224JSW.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (87 years): (4) H3K27ac, ENCFF224JSW\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 99.3\ shortLabel ENCFF224JSW\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO423GGP dataType=typeH3k27ac\ track ENCFF224JSW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF239MVC ENCSR000BTM Signal bigWig HepG2 MAX ENCSR000BTM signal 2 555 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/32f737b9-0f04-407a-a418-de16ec8920ab/ENCFF239MVC.bigWig\ color 137,152,82\ longLabel HepG2 MAX ENCSR000BTM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTM Signal\ track wgEncodeReg4TfChip_ENCFF239MVC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF976GWC ENCSR000ENK Peak bigBed 5 Fibroblast of the conjunctiva DNase peak 4 555 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/536fe88f-1cf9-4283-9622-d36f91d9b6eb/ENCFF976GWC.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of the conjunctiva DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENK Peak\ track wgEncodeReg4Epigenetics_ENCFF976GWC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF715SXQ ENCSR483IHO + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 555 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/40bd8250-e4fb-423c-ab9a-285fb7f56e9a/ENCFF715SXQ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR483IHO + strand\ track wgEncodeReg4RnaSeq_ENCFF715SXQ\ type bigWig\ visibility full\ encTfChipPkENCFF560CYG K562 EWSR1 narrowPeak Transcription Factor ChIP-seq Peaks of EWSR1 in K562 from ENCODE 3 (ENCFF560CYG) 0 555 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of EWSR1 in K562 from ENCODE 3 (ENCFF560CYG)\ parent encTfChipPk off\ shortLabel K562 EWSR1\ subGroups cellType=K562 factor=EWSR1\ track encTfChipPkENCFF560CYG\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward 0 555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward 1 555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ ENCFF046NYM ENCFF046NYM bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (4) H3K27ac, ENCFF046NYM 2 556 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF046NYM.bw\ color 255,205,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (4) H3K27ac, ENCFF046NYM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 79.3\ shortLabel ENCFF046NYM\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO448YMQ dataType=typeH3k27ac\ track ENCFF046NYM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF277EQG ENCSR000BTN Peak bigBed 5 A549 PBX3 peaks 4 556 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/418a38b5-e4ea-4724-8b6f-d3b579d45076/ENCFF277EQG.bigBed\ labelFields none\ longLabel A549 PBX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF277EQG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF927IVP ENCSR000ENK Signal bigWig Fibroblast of the conjunctiva DNase signal 2 556 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/addfc507-af4a-46b9-b388-b37ae018fadc/ENCFF927IVP.bigWig\ color 6,218,147\ longLabel Fibroblast of the conjunctiva DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENK Signal\ track wgEncodeReg4Epigenetics_ENCFF927IVP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF430BEX ENCSR483IHO - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 556 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/82f35dd1-bbe8-4367-8845-d3deb4a438e8/ENCFF430BEX.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR483IHO - strand\ track wgEncodeReg4RnaSeq_ENCFF430BEX\ type bigWig\ visibility full\ encTfChipPkENCFF084DTV K562 FIP1L1 narrowPeak Transcription Factor ChIP-seq Peaks of FIP1L1 in K562 from ENCODE 3 (ENCFF084DTV) 0 556 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FIP1L1 in K562 from ENCODE 3 (ENCFF084DTV)\ parent encTfChipPk off\ shortLabel K562 FIP1L1\ subGroups cellType=K562 factor=FIP1L1\ track encTfChipPkENCFF084DTV\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse 0 556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse 1 556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep1%20%28MM%20XIX%20-%2013%29.CNhs13111.12272-130B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep1 (MM XIX - 13)_CNhs13111_12272-130B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12272-130B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep1MMXIX13_CNhs13111_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12272-130B4\ urlLabel FANTOM5 Details:\ ENCFF398ITJ ENCFF398ITJ bigWig Middle frontal area 46, female adult (83 years): (4) H3K27ac, ENCFF398ITJ 2 557 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF398ITJ.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (83 years): (4) H3K27ac, ENCFF398ITJ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 97.3\ shortLabel ENCFF398ITJ\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__83_years_ biosampleType=tissue donor=ENCDO448ZXP dataType=typeH3k27ac\ track ENCFF398ITJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF947CZC ENCSR000BTN Signal bigWig A549 PBX3 ENCSR000BTN signal 2 557 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/bc54e6d4-5f9a-4457-983e-80d35d4efb74/ENCFF947CZC.bigWig\ color 130,163,45\ longLabel A549 PBX3 ENCSR000BTN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTN Signal\ track wgEncodeReg4TfChip_ENCFF947CZC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF675JDL ENCSR000ENL Peak bigBed 5 Choroid plexus epithelial cell DNase peak 4 557 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/1b66ac91-4b69-4291-8cc2-e3e01308db9c/ENCFF675JDL.bigBed\ color 6,218,147\ labelFields none\ longLabel Choroid plexus epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENL Peak\ track wgEncodeReg4Epigenetics_ENCFF675JDL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF697OAU ENCSR484WZL + strand bigWig Placenta tissue embryo + strand total RNA-seq signal 2 557 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/73f0e81f-bb62-43b5-936c-b864c8669cd8/ENCFF697OAU.bigWig\ color 104,171,71\ longLabel Placenta tissue embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR484WZL + strand\ track wgEncodeReg4RnaSeq_ENCFF697OAU\ type bigWig\ visibility full\ encTfChipPkENCFF087MFG K562 FOSL1 narrowPeak Transcription Factor ChIP-seq Peaks of FOSL1 in K562 from ENCODE 3 (ENCFF087MFG) 0 557 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOSL1 in K562 from ENCODE 3 (ENCFF087MFG)\ parent encTfChipPk off\ shortLabel K562 FOSL1\ subGroups cellType=K562 factor=FOSL1\ track encTfChipPkENCFF087MFG\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward 0 557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward 1 557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ ENCFF156GJU ENCFF156GJU bigWig Middle frontal area 46, female adult (84 years): (4) H3K27ac, ENCFF156GJU 2 558 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF156GJU.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (84 years): (4) H3K27ac, ENCFF156GJU\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 98.3\ shortLabel ENCFF156GJU\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__84_years_ biosampleType=tissue donor=ENCDO461DJY dataType=typeH3k27ac\ track ENCFF156GJU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF271ZVL ENCSR000BTO Peak bigBed 5 Ishikawa TAF1 peaks 4 558 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/dde09948-9edd-4a7b-b13c-ac54aab0c9d6/ENCFF271ZVL.bigBed\ labelFields none\ longLabel Ishikawa TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF271ZVL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF237KVM ENCSR000ENL Signal bigWig Choroid plexus epithelial cell DNase signal 2 558 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/05c216c9-c5db-468a-b97b-2922bc3fe062/ENCFF237KVM.bigWig\ color 6,218,147\ longLabel Choroid plexus epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENL Signal\ track wgEncodeReg4Epigenetics_ENCFF237KVM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF362EDN ENCSR484WZL - strand bigWig Placenta tissue embryo - strand total RNA-seq signal 2 558 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/6e51a57d-33e1-4511-9824-8d96084ed8d7/ENCFF362EDN.bigWig\ color 104,171,71\ longLabel Placenta tissue embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR484WZL - strand\ track wgEncodeReg4RnaSeq_ENCFF362EDN\ type bigWig\ visibility full\ encTfChipPkENCFF765NAN K562 FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in K562 from ENCODE 3 (ENCFF765NAN) 0 558 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in K562 from ENCODE 3 (ENCFF765NAN)\ parent encTfChipPk off\ shortLabel K562 FOXA1\ subGroups cellType=K562 factor=FOXA1\ track encTfChipPkENCFF765NAN\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse 0 558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse 1 558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep2%20%28MM%20XIV%20-%2013%29.CNhs13170.12394-131F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep2 (MM XIV - 13)_CNhs13170_12394-131F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12394-131F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep2MMXIV13_CNhs13170_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12394-131F9\ urlLabel FANTOM5 Details:\ ENCFF750UAD ENCFF750UAD bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF750UAD 2 559 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF750UAD.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF750UAD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 87.3\ shortLabel ENCFF750UAD\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO471EKG dataType=typeH3k27ac\ track ENCFF750UAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF649BTF ENCSR000BTO Signal bigWig Ishikawa TAF1 ENCSR000BTO signal 2 559 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/da0ec4f7-4330-4b6c-b1c9-a76a0d1580ce/ENCFF649BTF.bigWig\ color 186,111,165\ longLabel Ishikawa TAF1 ENCSR000BTO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTO Signal\ track wgEncodeReg4TfChip_ENCFF649BTF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF290TAZ ENCSR000ENM Peak bigBed 5 HCT116 DNase peak 4 559 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/ab948b49-08dc-424d-aa9f-c0c8bd8609b0/ENCFF290TAZ.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENM Peak\ track wgEncodeReg4Epigenetics_ENCFF290TAZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF263ZRO ENCSR485WBR + strand bigWig Gastroesophageal sphincter tissue male adult (54 years) + strand total RNA-seq signal 2 559 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/a16fb922-0724-4e21-89ca-1fca9d40ccef/ENCFF263ZRO.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR485WBR + strand\ track wgEncodeReg4RnaSeq_ENCFF263ZRO\ type bigWig\ visibility full\ encTfChipPkENCFF066CWG K562 FOXK2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF066CWG) 0 559 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF066CWG)\ parent encTfChipPk off\ shortLabel K562 FOXK2 1\ subGroups cellType=K562 factor=FOXK2\ track encTfChipPkENCFF066CWG\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_fwd LymphaticEndothelialCellsToVegfc_05hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward 0 559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_fwd LymphaticEndothelialCellsToVegfc_05hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward 1 559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ ENCFF242WZH ENCFF242WZH bigWig Middle frontal area 46, male adult (71 years): (4) H3K27ac, ENCFF242WZH 2 560 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF242WZH.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (71 years): (4) H3K27ac, ENCFF242WZH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 107.3\ shortLabel ENCFF242WZH\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__71_years_ biosampleType=tissue donor=ENCDO570AKP dataType=typeH3k27ac\ track ENCFF242WZH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF881POI ENCSR000BTP Peak bigBed 5 MCF-7 HDAC2 peaks 4 560 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3773dd9c-0a15-4a5a-9e83-8433dec7da13/ENCFF881POI.bigBed\ labelFields none\ longLabel MCF-7 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF881POI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF431JDU ENCSR000ENM Signal bigWig HCT116 DNase signal 2 560 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/ed7f5938-a832-47e2-9f01-c822c01da1b8/ENCFF431JDU.bigWig\ color 6,218,147\ longLabel HCT116 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENM Signal\ track wgEncodeReg4Epigenetics_ENCFF431JDU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF713QAB ENCSR485WBR - strand bigWig Gastroesophageal sphincter tissue male adult (54 years) - strand total RNA-seq signal 2 560 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/fb263cb7-d4ca-4b77-a0eb-e5e7e6bc5dfa/ENCFF713QAB.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR485WBR - strand\ track wgEncodeReg4RnaSeq_ENCFF713QAB\ type bigWig\ visibility full\ encTfChipPkENCFF490EQR K562 FOXK2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF490EQR) 0 560 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in K562 from ENCODE 3 (ENCFF490EQR)\ parent encTfChipPk off\ shortLabel K562 FOXK2 2\ subGroups cellType=K562 factor=FOXK2\ track encTfChipPkENCFF490EQR\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_rev LymphaticEndothelialCellsToVegfc_05hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse 0 560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_rev LymphaticEndothelialCellsToVegfc_05hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse 1 560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2005hr%2c%20biol_rep3%20%28MM%20XXII%20-%2013%29.CNhs13288.12516-133B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 05hr, biol_rep3 (MM XXII - 13)_CNhs13288_12516-133B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12516-133B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_05hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC05hrBiolRep3MMXXII13_CNhs13288_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12516-133B5\ urlLabel FANTOM5 Details:\ ENCFF942YRH ENCFF942YRH bigWig Middle frontal area 46, male adult (83 years): (4) H3K27ac, ENCFF942YRH 2 561 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF942YRH.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (83 years): (4) H3K27ac, ENCFF942YRH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 111.3\ shortLabel ENCFF942YRH\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO592ZWW dataType=typeH3k27ac\ track ENCFF942YRH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF852EGW ENCSR000BTP Signal bigWig MCF-7 HDAC2 ENCSR000BTP signal 2 561 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f750e6e3-69bb-4dc0-bf58-a5dced334be3/ENCFF852EGW.bigWig\ color 65,171,173\ longLabel MCF-7 HDAC2 ENCSR000BTP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTP Signal\ track wgEncodeReg4TfChip_ENCFF852EGW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF450ENP ENCSR000ENN Peak bigBed 5 Epithelial cell of esophagus DNase peak 4 561 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/5b8ec97f-abd3-48da-bf52-ad2f62acf8f2/ENCFF450ENP.bigBed\ color 6,218,147\ labelFields none\ longLabel Epithelial cell of esophagus DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENN Peak\ track wgEncodeReg4Epigenetics_ENCFF450ENP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF333TRZ ENCSR490SQH + strand bigWig H7 + strand total RNA-seq signal 2 561 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/30f5aa34-412a-47ed-88e1-2122ed4fd8da/ENCFF333TRZ.bigWig\ color 118,158,101\ longLabel H7 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR490SQH + strand\ track wgEncodeReg4RnaSeq_ENCFF333TRZ\ type bigWig\ visibility full\ encTfChipPkENCFF778PWE K562 FOXM1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXM1 in K562 from ENCODE 3 (ENCFF778PWE) 0 561 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FOXM1 in K562 from ENCODE 3 (ENCFF778PWE)\ parent encTfChipPk off\ shortLabel K562 FOXM1\ subGroups cellType=K562 factor=FOXM1\ track encTfChipPkENCFF778PWE\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward 0 561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward 1 561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ ENCFF909JLH ENCFF909JLH bigWig Middle frontal area 46, female adult (79 years): (4) H3K27ac, ENCFF909JLH 2 562 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF909JLH.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (79 years): (4) H3K27ac, ENCFF909JLH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 95.3\ shortLabel ENCFF909JLH\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__79_years_ biosampleType=tissue donor=ENCDO609ZOG dataType=typeH3k27ac\ track ENCFF909JLH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF724VCQ ENCSR000BTQ Peak bigBed 5 MCF-7 RAD21 peaks 4 562 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/af245e65-a099-4142-a937-d8db8d205b8e/ENCFF724VCQ.bigBed\ labelFields none\ longLabel MCF-7 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF724VCQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF915KQY ENCSR000ENN Signal bigWig Epithelial cell of esophagus DNase signal 2 562 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/8fd47ce4-7fe1-434f-84a2-64b8e5ed26cf/ENCFF915KQY.bigWig\ color 6,218,147\ longLabel Epithelial cell of esophagus DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENN Signal\ track wgEncodeReg4Epigenetics_ENCFF915KQY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF061BHN ENCSR490SQH - strand bigWig H7 - strand total RNA-seq signal 2 562 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/782fc5a1-4ca8-4a45-8a46-231411622877/ENCFF061BHN.bigWig\ color 118,158,101\ longLabel H7 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR490SQH - strand\ track wgEncodeReg4RnaSeq_ENCFF061BHN\ type bigWig\ visibility full\ encTfChipPkENCFF688ARM K562 FUS narrowPeak Transcription Factor ChIP-seq Peaks of FUS in K562 from ENCODE 3 (ENCFF688ARM) 0 562 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of FUS in K562 from ENCODE 3 (ENCFF688ARM)\ parent encTfChipPk off\ shortLabel K562 FUS\ subGroups cellType=K562 factor=FUS\ track encTfChipPkENCFF688ARM\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse 0 562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse 1 562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep1%20%28MM%20XIX%20-%2014%29.CNhs13112.12273-130B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep1 (MM XIX - 14)_CNhs13112_12273-130B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12273-130B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep1MMXIX14_CNhs13112_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12273-130B5\ urlLabel FANTOM5 Details:\ ENCFF973ZFT ENCFF973ZFT bigWig Middle frontal area 46, male adult (78 years): (4) H3K27ac, ENCFF973ZFT 2 563 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF973ZFT.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (78 years): (4) H3K27ac, ENCFF973ZFT\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 108.3\ shortLabel ENCFF973ZFT\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__78_years_ biosampleType=tissue donor=ENCDO623FPG dataType=typeH3k27ac\ track ENCFF973ZFT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF586PQJ ENCSR000BTQ Signal bigWig MCF-7 RAD21 ENCSR000BTQ signal 2 563 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4db9c2df-ed47-4730-82e2-ae149fe80f42/ENCFF586PQJ.bigWig\ color 65,171,173\ longLabel MCF-7 RAD21 ENCSR000BTQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTQ Signal\ track wgEncodeReg4TfChip_ENCFF586PQJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF506NRS ENCSR000ENO Peak bigBed 5 HeLa-S3 G1b phase DNase peak 4 563 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/e01ed55b-b5b5-4a62-a533-65b2e31d51b6/ENCFF506NRS.bigBed\ color 6,218,147\ labelFields none\ longLabel HeLa-S3 G1b phase DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENO Peak\ track wgEncodeReg4Epigenetics_ENCFF506NRS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF535TIX ENCSR495HDM + strand bigWig Prostate gland tissue male adult (37 years) + strand total RNA-seq signal 2 563 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/59f1864e-ef5d-40d0-9c32-e3387b7b3b0f/ENCFF535TIX.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR495HDM + strand\ track wgEncodeReg4RnaSeq_ENCFF535TIX\ type bigWig\ visibility full\ encTfChipPkENCFF124HAC K562 GABPA narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in K562 from ENCODE 3 (ENCFF124HAC) 0 563 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GABPA in K562 from ENCODE 3 (ENCFF124HAC)\ parent encTfChipPk off\ shortLabel K562 GABPA\ subGroups cellType=K562 factor=GABPA\ track encTfChipPkENCFF124HAC\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward 0 563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward 1 563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ ENCFF646GXZ ENCFF646GXZ bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF646GXZ 2 564 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF646GXZ.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF646GXZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 85.3\ shortLabel ENCFF646GXZ\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO634UMA dataType=typeH3k27ac\ track ENCFF646GXZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF508OAU ENCSR000BTR Peak bigBed 5 MCF-7 EP300 peaks 4 564 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8aeecd09-66e9-4086-b9cd-2a9d5047aea2/ENCFF508OAU.bigBed\ labelFields none\ longLabel MCF-7 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF508OAU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF194NJI ENCSR000ENO Signal bigWig HeLa-S3 G1b phase DNase signal 2 564 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/7f0013bd-1a82-4f01-869b-535c3d876b95/ENCFF194NJI.bigWig\ color 6,218,147\ longLabel HeLa-S3 G1b phase DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENO Signal\ track wgEncodeReg4Epigenetics_ENCFF194NJI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF707KWY ENCSR495HDM - strand bigWig Prostate gland tissue male adult (37 years) - strand total RNA-seq signal 2 564 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/7ad3005f-99e7-46e6-92f7-4ecfb7b463f8/ENCFF707KWY.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR495HDM - strand\ track wgEncodeReg4RnaSeq_ENCFF707KWY\ type bigWig\ visibility full\ encTfChipPkENCFF700DXR K562 GABPB1 narrowPeak Transcription Factor ChIP-seq Peaks of GABPB1 in K562 from ENCODE 3 (ENCFF700DXR) 0 564 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GABPB1 in K562 from ENCODE 3 (ENCFF700DXR)\ parent encTfChipPk off\ shortLabel K562 GABPB1\ subGroups cellType=K562 factor=GABPB1\ track encTfChipPkENCFF700DXR\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse 0 564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse 1 564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep2%20%28MM%20XIV%20-%2014%29.CNhs13171.12395-131G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep2 (MM XIV - 14)_CNhs13171_12395-131G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12395-131G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep2MMXIV14_CNhs13171_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12395-131G1\ urlLabel FANTOM5 Details:\ ENCFF111ACH ENCFF111ACH bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (4) H3K27ac, ENCFF111ACH 2 565 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF111ACH.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (4) H3K27ac, ENCFF111ACH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 75.3\ shortLabel ENCFF111ACH\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO637GUS dataType=typeH3k27ac\ track ENCFF111ACH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF954BGW ENCSR000BTR Signal bigWig MCF-7 EP300 ENCSR000BTR signal 2 565 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/387d0b09-da63-45f5-9d7e-68f8bc1db96c/ENCFF954BGW.bigWig\ color 65,171,173\ longLabel MCF-7 EP300 ENCSR000BTR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTR Signal\ track wgEncodeReg4TfChip_ENCFF954BGW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF257LTI ENCSR000ENQ Peak bigBed 5 Foreskin fibroblast male newborn DNase peak 4 565 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/a8a93d3a-1c73-496a-b50e-f1e45e2423e9/ENCFF257LTI.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin fibroblast male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENQ Peak\ track wgEncodeReg4Epigenetics_ENCFF257LTI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF948SFF ENCSR497KUU + strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal 2 565 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/d8887885-70d7-4b89-98cf-3015920d2421/ENCFF948SFF.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR497KUU + strand\ track wgEncodeReg4RnaSeq_ENCFF948SFF\ type bigWig\ visibility full\ encTfChipPkENCFF148JKK K562 GATA1 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in K562 from ENCODE 3 (ENCFF148JKK) 0 565 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATA1 in K562 from ENCODE 3 (ENCFF148JKK)\ parent encTfChipPk off\ shortLabel K562 GATA1\ subGroups cellType=K562 factor=GATA1\ track encTfChipPkENCFF148JKK\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_fwd LymphaticEndothelialCellsToVegfc_06hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward 0 565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_fwd LymphaticEndothelialCellsToVegfc_06hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward 1 565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ ENCFF489BZS ENCFF489BZS bigWig Middle frontal area 46, female adult (87 years): (4) H3K27ac, ENCFF489BZS 2 566 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF489BZS.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (87 years): (4) H3K27ac, ENCFF489BZS\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 100.3\ shortLabel ENCFF489BZS\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO640RUC dataType=typeH3k27ac\ track ENCFF489BZS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF667JYU ENCSR000BTS Peak bigBed 5 SK-N-SH ZBTB33 peaks 4 566 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/0dc71d8b-ff3d-4140-8f86-a44bba771f0e/ENCFF667JYU.bigBed\ labelFields none\ longLabel SK-N-SH ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF667JYU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF022BVH ENCSR000ENQ Signal bigWig Foreskin fibroblast male newborn DNase signal 2 566 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/50d6ed9a-aedc-4b4b-b3ac-b72abef19bb8/ENCFF022BVH.bigWig\ color 6,218,147\ longLabel Foreskin fibroblast male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENQ Signal\ track wgEncodeReg4Epigenetics_ENCFF022BVH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF954TYS ENCSR497KUU - strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal 2 566 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/b915d764-fc02-45b7-9a81-a47aaf2fb6ff/ENCFF954TYS.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR497KUU - strand\ track wgEncodeReg4RnaSeq_ENCFF954TYS\ type bigWig\ visibility full\ encTfChipPkENCFF173TXA K562 GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in K562 from ENCODE 3 (ENCFF173TXA) 0 566 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATA2 in K562 from ENCODE 3 (ENCFF173TXA)\ parent encTfChipPk on\ shortLabel K562 GATA2\ subGroups cellType=K562 factor=GATA2\ track encTfChipPkENCFF173TXA\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_rev LymphaticEndothelialCellsToVegfc_06hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse 0 566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_rev LymphaticEndothelialCellsToVegfc_06hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse 1 566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2006hr%2c%20biol_rep3%20%28MM%20XXII%20-%2014%29.CNhs13289.12517-133B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 06hr, biol_rep3 (MM XXII - 14)_CNhs13289_12517-133B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12517-133B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_06hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC06hrBiolRep3MMXXII14_CNhs13289_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12517-133B6\ urlLabel FANTOM5 Details:\ ENCFF686LXM ENCFF686LXM bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF686LXM 2 567 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF686LXM.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF686LXM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 91.3\ shortLabel ENCFF686LXM\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO660TGP dataType=typeH3k27ac\ track ENCFF686LXM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF105KVL ENCSR000BTS Signal bigWig SK-N-SH ZBTB33 ENCSR000BTS signal 2 567 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/528bbb8b-152d-4c5a-918f-58114224cd25/ENCFF105KVL.bigWig\ color 155,155,18\ longLabel SK-N-SH ZBTB33 ENCSR000BTS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTS Signal\ track wgEncodeReg4TfChip_ENCFF105KVL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF864GOL ENCSR000ENR Peak bigBed 5 HFF-Myc originated from foreskin fibroblast DNase peak 4 567 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/ce4e8ddc-66e6-45ba-b7e7-470a62772b33/ENCFF864GOL.bigBed\ color 6,218,147\ labelFields none\ longLabel HFF-Myc originated from foreskin fibroblast DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENR Peak\ track wgEncodeReg4Epigenetics_ENCFF864GOL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF849BKN ENCSR500JSJ + strand bigWig Upper lobe of left lung tissue male adult (60 years) + strand total RNA-seq signal 2 567 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/2f0eec45-ab3e-429e-b30a-e1f23e809462/ENCFF849BKN.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR500JSJ + strand\ track wgEncodeReg4RnaSeq_ENCFF849BKN\ type bigWig\ visibility full\ encTfChipPkENCFF950ZWP K562 GATAD2A narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2A in K562 from ENCODE 3 (ENCFF950ZWP) 0 567 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2A in K562 from ENCODE 3 (ENCFF950ZWP)\ parent encTfChipPk off\ shortLabel K562 GATAD2A\ subGroups cellType=K562 factor=GATAD2A\ track encTfChipPkENCFF950ZWP\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward 0 567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward 1 567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ ENCFF943HGP ENCFF943HGP bigWig Middle frontal area 46, male adult (86 years): (4) H3K27ac, ENCFF943HGP 2 568 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF943HGP.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (86 years): (4) H3K27ac, ENCFF943HGP\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 113.3\ shortLabel ENCFF943HGP\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__86_years_ biosampleType=tissue donor=ENCDO666UNK dataType=typeH3k27ac\ track ENCFF943HGP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF010USJ ENCSR000BTT Peak bigBed 5 Ishikawa CEBPB peaks 4 568 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c3a5127e-e12a-440c-a85a-3d7a90661476/ENCFF010USJ.bigBed\ labelFields none\ longLabel Ishikawa CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF010USJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF484WUK ENCSR000ENR Signal bigWig HFF-Myc originated from foreskin fibroblast DNase signal 2 568 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/112cbecb-109c-4653-8602-c1d11e697485/ENCFF484WUK.bigWig\ color 6,218,147\ longLabel HFF-Myc originated from foreskin fibroblast DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENR Signal\ track wgEncodeReg4Epigenetics_ENCFF484WUK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF221ZLD ENCSR500JSJ - strand bigWig Upper lobe of left lung tissue male adult (60 years) - strand total RNA-seq signal 2 568 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/1a925f8e-e88d-408e-bbbe-d84b4ec061c6/ENCFF221ZLD.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR500JSJ - strand\ track wgEncodeReg4RnaSeq_ENCFF221ZLD\ type bigWig\ visibility full\ encTfChipPkENCFF569CMJ K562 GATAD2B narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in K562 from ENCODE 3 (ENCFF569CMJ) 0 568 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in K562 from ENCODE 3 (ENCFF569CMJ)\ parent encTfChipPk off\ shortLabel K562 GATAD2B\ subGroups cellType=K562 factor=GATAD2B\ track encTfChipPkENCFF569CMJ\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse 0 568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse 1 568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep1%20%28MM%20XIX%20-%2015%29.CNhs13113.12274-130B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep1 (MM XIX - 15)_CNhs13113_12274-130B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12274-130B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep1MMXIX15_CNhs13113_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12274-130B6\ urlLabel FANTOM5 Details:\ ENCFF371ZKC ENCFF371ZKC bigWig Middle frontal area 46, female adult (88 years): (4) H3K27ac, ENCFF371ZKC 2 569 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF371ZKC.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (88 years): (4) H3K27ac, ENCFF371ZKC\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 101.3\ shortLabel ENCFF371ZKC\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__88_years_ biosampleType=tissue donor=ENCDO669IVL dataType=typeH3k27ac\ track ENCFF371ZKC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF699GAS ENCSR000BTT Signal bigWig Ishikawa CEBPB ENCSR000BTT signal 2 569 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/bd7a17e8-171f-4db4-a3ae-9160ceb445d9/ENCFF699GAS.bigWig\ color 186,111,165\ longLabel Ishikawa CEBPB ENCSR000BTT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTT Signal\ track wgEncodeReg4TfChip_ENCFF699GAS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF719OHA ENCSR000ENS Peak bigBed 5 Fibroblast of gingiva DNase peak 4 569 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/f5fb139e-d3f4-40b6-a492-922696bc79b7/ENCFF719OHA.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of gingiva DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENS Peak\ track wgEncodeReg4Epigenetics_ENCFF719OHA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF845DJW ENCSR501DTN + strand bigWig CD8-positive, alpha-beta T cell male adult (21 years) + strand total RNA-seq signal 2 569 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6fd7d33d-e43b-4991-947c-d98ac133d59a/ENCFF845DJW.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta T cell male adult (21 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR501DTN + strand\ track wgEncodeReg4RnaSeq_ENCFF845DJW\ type bigWig\ visibility full\ encTfChipPkENCFF678VPQ K562 GMEB1 narrowPeak Transcription Factor ChIP-seq Peaks of GMEB1 in K562 from ENCODE 3 (ENCFF678VPQ) 0 569 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of GMEB1 in K562 from ENCODE 3 (ENCFF678VPQ)\ parent encTfChipPk off\ shortLabel K562 GMEB1\ subGroups cellType=K562 factor=GMEB1\ track encTfChipPkENCFF678VPQ\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward 0 569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward 1 569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ ENCFF701XQB ENCFF701XQB bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF701XQB 2 570 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF701XQB.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF701XQB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 90.3\ shortLabel ENCFF701XQB\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO672KST dataType=typeH3k27ac\ track ENCFF701XQB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF570JVV ENCSR000BTU Peak bigBed 5 Ishikawa RAD21 peaks 4 570 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a1c1ecf3-c70c-40f8-9d34-65fdfd721d71/ENCFF570JVV.bigBed\ labelFields none\ longLabel Ishikawa RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF570JVV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF352VPU ENCSR000ENS Signal bigWig Fibroblast of gingiva DNase signal 2 570 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/0773dab2-9cd7-4e30-968b-212c9a0e49c7/ENCFF352VPU.bigWig\ color 6,218,147\ longLabel Fibroblast of gingiva DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENS Signal\ track wgEncodeReg4Epigenetics_ENCFF352VPU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF381LRT ENCSR501DTN - strand bigWig CD8-positive, alpha-beta T cell male adult (21 years) - strand total RNA-seq signal 2 570 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/d2c5624c-a4b2-4d0a-a988-e5e62f12cd98/ENCFF381LRT.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta T cell male adult (21 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR501DTN - strand\ track wgEncodeReg4RnaSeq_ENCFF381LRT\ type bigWig\ visibility full\ encTfChipPkENCFF167RXK K562 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in K562 from ENCODE 3 (ENCFF167RXK) 0 570 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in K562 from ENCODE 3 (ENCFF167RXK)\ parent encTfChipPk off\ shortLabel K562 HCFC1\ subGroups cellType=K562 factor=HCFC1\ track encTfChipPkENCFF167RXK\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse 0 570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse 1 570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep2%20%28MM%20XIV%20-%2015%29.CNhs13172.12396-131G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep2 (MM XIV - 15)_CNhs13172_12396-131G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12396-131G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep2MMXIV15_CNhs13172_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12396-131G2\ urlLabel FANTOM5 Details:\ ENCFF137KZR ENCFF137KZR bigWig Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (4) H3K27ac, ENCFF137KZR 2 571 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF137KZR.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (4) H3K27ac, ENCFF137KZR\ maxHeightPixels 30\ parent H3K27ac_view on\ priority 92.3\ shortLabel ENCFF137KZR\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__89_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO697SWU dataType=typeH3k27ac\ track ENCFF137KZR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF561WEM ENCSR000BTU Signal bigWig Ishikawa RAD21 ENCSR000BTU signal 2 571 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/33e88eaa-175b-470e-a0fa-5eb36246745f/ENCFF561WEM.bigWig\ color 186,111,165\ longLabel Ishikawa RAD21 ENCSR000BTU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTU Signal\ track wgEncodeReg4TfChip_ENCFF561WEM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF689FPA ENCSR000ENT Peak bigBed 5 Iris pigment epithelial cell DNase peak 4 571 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/37a62bca-6879-413f-8f13-0ea667dfcd98/ENCFF689FPA.bigBed\ color 6,218,147\ labelFields none\ longLabel Iris pigment epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENT Peak\ track wgEncodeReg4Epigenetics_ENCFF689FPA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF585RYH ENCSR501XXE + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 571 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/861392cb-e8f6-4039-8938-1446590fd684/ENCFF585RYH.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR501XXE + strand\ track wgEncodeReg4RnaSeq_ENCFF585RYH\ type bigWig\ visibility full\ encTfChipPkENCFF758PGF K562 HDAC1 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF758PGF) 0 571 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF758PGF)\ parent encTfChipPk off\ shortLabel K562 HDAC1 1\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF758PGF\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_fwd LymphaticEndothelialCellsToVegfc_07hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward 0 571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_fwd LymphaticEndothelialCellsToVegfc_07hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward 1 571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ ENCFF986LOD ENCFF986LOD bigWig Middle frontal area 46, female adult (89 years): (4) H3K27ac, ENCFF986LOD 2 572 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF986LOD.bw\ color 255,205,0\ longLabel Middle frontal area 46, female adult (89 years): (4) H3K27ac, ENCFF986LOD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 102.3\ shortLabel ENCFF986LOD\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_female_adult__89_years_ biosampleType=tissue donor=ENCDO707TUE dataType=typeH3k27ac\ track ENCFF986LOD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF882LXX ENCSR000BTV Peak bigBed 5 Neural cell originated from H1 REST peaks 4 572 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/a7f575e5-d5ad-4265-9166-c556670898ed/ENCFF882LXX.bigBed\ labelFields none\ longLabel Neural cell originated from H1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF882LXX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF329KZI ENCSR000ENT Signal bigWig Iris pigment epithelial cell DNase signal 2 572 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/61b2aa03-2a4f-4673-b054-b0f580033c67/ENCFF329KZI.bigWig\ color 6,218,147\ longLabel Iris pigment epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENT Signal\ track wgEncodeReg4Epigenetics_ENCFF329KZI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF323IVQ ENCSR501XXE - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 572 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/915514e5-e8e7-4ca5-ab58-36e1c554feb5/ENCFF323IVQ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR501XXE - strand\ track wgEncodeReg4RnaSeq_ENCFF323IVQ\ type bigWig\ visibility full\ encTfChipPkENCFF661VOO K562 HDAC1 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF661VOO) 0 572 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF661VOO)\ parent encTfChipPk off\ shortLabel K562 HDAC1 2\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF661VOO\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_rev LymphaticEndothelialCellsToVegfc_07hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse 0 572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_rev LymphaticEndothelialCellsToVegfc_07hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse 1 572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2007hr%2c%20biol_rep3%20%28MM%20XXII%20-%2015%29.CNhs13290.12518-133B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 07hr, biol_rep3 (MM XXII - 15)_CNhs13290_12518-133B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12518-133B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_07hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC07hrBiolRep3MMXXII15_CNhs13290_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12518-133B7\ urlLabel FANTOM5 Details:\ ENCFF156YTC ENCFF156YTC bigWig Middle frontal area 46, male adult (83 years): (4) H3K27ac, ENCFF156YTC 2 573 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF156YTC.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (83 years): (4) H3K27ac, ENCFF156YTC\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 110.3\ shortLabel ENCFF156YTC\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO736YJH dataType=typeH3k27ac\ track ENCFF156YTC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF367QZK ENCSR000BTV Signal bigWig Neural cell originated from H1 REST ENCSR000BTV signal 2 573 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/4d58cc2f-13f9-4ced-9c4e-4380a3729b0e/ENCFF367QZK.bigWig\ color 155,155,18\ longLabel Neural cell originated from H1 REST ENCSR000BTV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTV Signal\ track wgEncodeReg4TfChip_ENCFF367QZK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF182YGK ENCSR000ENV Peak bigBed 5 Mammary epithelial cell female DNase peak 4 573 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/ca5ef531-7ca1-4cbc-884a-19f481b35d37/ENCFF182YGK.bigBed\ color 6,218,147\ labelFields none\ longLabel Mammary epithelial cell female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENV Peak\ track wgEncodeReg4Epigenetics_ENCFF182YGK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF773TUH ENCSR502PAY + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 573 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/c082ae84-148e-4119-bf89-cb21dc0b7c5e/ENCFF773TUH.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR502PAY + strand\ track wgEncodeReg4RnaSeq_ENCFF773TUH\ type bigWig\ visibility full\ encTfChipPkENCFF188TBM K562 HDAC1 3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF188TBM) 0 573 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF188TBM)\ parent encTfChipPk off\ shortLabel K562 HDAC1 3\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF188TBM\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward 0 573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr1+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward 1 573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ ENCFF280YLT ENCFF280YLT bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF280YLT 2 574 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF280YLT.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF280YLT\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 88.3\ shortLabel ENCFF280YLT\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO739EFE dataType=typeH3k27ac\ track ENCFF280YLT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF604SPB ENCSR000BTW Peak bigBed 5 Neural cell originated from H1 POLR2AphosphoS5 peaks 4 574 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/a2d3aee9-e910-4b71-be13-691c615d2405/ENCFF604SPB.bigBed\ labelFields none\ longLabel Neural cell originated from H1 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF604SPB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF889GXK ENCSR000ENV Signal bigWig Mammary epithelial cell female DNase signal 2 574 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/777e9058-4e4f-49c5-8c0f-5b6aed0fc4fc/ENCFF889GXK.bigWig\ color 6,218,147\ longLabel Mammary epithelial cell female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENV Signal\ track wgEncodeReg4Epigenetics_ENCFF889GXK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF371KCC ENCSR502PAY - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 574 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/4345941a-f439-44f6-be7d-1cab3203de68/ENCFF371KCC.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR502PAY - strand\ track wgEncodeReg4RnaSeq_ENCFF371KCC\ type bigWig\ visibility full\ encTfChipPkENCFF557WXK K562 HDAC1 4 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF557WXK) 0 574 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC1 in K562 from ENCODE 3 (ENCFF557WXK)\ parent encTfChipPk off\ shortLabel K562 HDAC1 4\ subGroups cellType=K562 factor=HDAC1\ track encTfChipPkENCFF557WXK\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse 0 574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr1- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse 1 574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep1%20%28MM%20XIX%20-%2016%29.CNhs11937.12275-130B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep1 (MM XIX - 16)_CNhs11937_12275-130B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12275-130B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr1-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep1MMXIX16_CNhs11937_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12275-130B7\ urlLabel FANTOM5 Details:\ ENCFF679HCC ENCFF679HCC bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (4) H3K27ac, ENCFF679HCC 2 575 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF679HCC.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (4) H3K27ac, ENCFF679HCC\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 72.3\ shortLabel ENCFF679HCC\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO830KFO dataType=typeH3k27ac\ track ENCFF679HCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF201GFS ENCSR000BTW Signal bigWig Neural cell originated from H1 POLR2AphosphoS5 ENCSR000BTW signal 2 575 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/cdb0d8d9-68cc-4280-833f-320bdf6dde55/ENCFF201GFS.bigWig\ color 155,155,18\ longLabel Neural cell originated from H1 POLR2AphosphoS5 ENCSR000BTW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTW Signal\ track wgEncodeReg4TfChip_ENCFF201GFS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF473KAY ENCSR000ENW Peak bigBed 5 Fibroblast of mammary gland female DNase peak 4 575 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/c6162a11-edbd-45a2-986d-f13a949aeee6/ENCFF473KAY.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of mammary gland female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENW Peak\ track wgEncodeReg4Epigenetics_ENCFF473KAY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF560FVE ENCSR504NIU + strand bigWig Subcutaneous adipose tissue tissue female adult (53 years) + strand total RNA-seq signal 2 575 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/35adfdb9-5a32-4171-bccb-1486c42c37d4/ENCFF560FVE.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR504NIU + strand\ track wgEncodeReg4RnaSeq_ENCFF560FVE\ type bigWig\ visibility full\ encTfChipPkENCFF363GSV K562 HDAC2 1 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF363GSV) 0 575 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF363GSV)\ parent encTfChipPk off\ shortLabel K562 HDAC2 1\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF363GSV\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward 0 575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr2+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward 1 575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ ENCFF820MMW ENCFF820MMW bigWig Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (4) H3K27ac, ENCFF820MMW 2 576 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF820MMW.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (4) H3K27ac, ENCFF820MMW\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 81.3\ shortLabel ENCFF820MMW\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__83_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO832DBZ dataType=typeH3k27ac\ track ENCFF820MMW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF468SPD ENCSR000BTX Peak bigBed 5 Neural cell originated from H1 TAF1 peaks 4 576 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/6538b049-a1c3-4c04-98b2-472fc218108c/ENCFF468SPD.bigBed\ labelFields none\ longLabel Neural cell originated from H1 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF468SPD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF355GLM ENCSR000ENW Signal bigWig Fibroblast of mammary gland female DNase signal 2 576 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/d138b713-dd53-4789-a6c8-bc11e3521950/ENCFF355GLM.bigWig\ color 6,218,147\ longLabel Fibroblast of mammary gland female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENW Signal\ track wgEncodeReg4Epigenetics_ENCFF355GLM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF218AFX ENCSR504NIU - strand bigWig Subcutaneous adipose tissue tissue female adult (53 years) - strand total RNA-seq signal 2 576 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/dc5158a5-d28c-46d1-8b09-74a75a1fd61f/ENCFF218AFX.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR504NIU - strand\ track wgEncodeReg4RnaSeq_ENCFF218AFX\ type bigWig\ visibility full\ encTfChipPkENCFF519RWJ K562 HDAC2 2 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF519RWJ) 0 576 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF519RWJ)\ parent encTfChipPk off\ shortLabel K562 HDAC2 2\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF519RWJ\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse 0 576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr2- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse 1 576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep2%20%28MM%20XIV%20-%2016%29.CNhs13173.12397-131G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep2 (MM XIV - 16)_CNhs13173_12397-131G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12397-131G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr2-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep2MMXIV16_CNhs13173_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12397-131G3\ urlLabel FANTOM5 Details:\ ENCFF146LLE ENCFF146LLE bigWig Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (4) H3K27ac, ENCFF146LLE 2 577 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF146LLE.bw\ color 255,205,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (4) H3K27ac, ENCFF146LLE\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 78.3\ shortLabel ENCFF146LLE\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__86_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO845GYA dataType=typeH3k27ac\ track ENCFF146LLE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF905SRS ENCSR000BTX Signal bigWig Neural cell originated from H1 TAF1 ENCSR000BTX signal 2 577 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1ed8d44e-dbe2-4674-b057-0c13f97e3f53/ENCFF905SRS.bigWig\ color 155,155,18\ longLabel Neural cell originated from H1 TAF1 ENCSR000BTX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTX Signal\ track wgEncodeReg4TfChip_ENCFF905SRS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF291PET ENCSR000ENX Peak bigBed 5 Dermis blood vessel endothelial cell female adult DNase peak 4 577 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/c33f0d8c-4629-4c82-813f-36b588b5eff4/ENCFF291PET.bigBed\ color 6,218,147\ labelFields none\ longLabel Dermis blood vessel endothelial cell female adult DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENX Peak\ track wgEncodeReg4Epigenetics_ENCFF291PET\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF672AXQ ENCSR504QMK + strand bigWig Right lobe of liver tissue female adult (53 years) + strand total RNA-seq signal 2 577 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/20/7bc46a96-8e1a-4fe4-8ab2-be6029219c60/ENCFF672AXQ.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR504QMK + strand\ track wgEncodeReg4RnaSeq_ENCFF672AXQ\ type bigWig\ visibility full\ encTfChipPkENCFF618YRQ K562 HDAC2 3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF618YRQ) 0 577 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC2 in K562 from ENCODE 3 (ENCFF618YRQ)\ parent encTfChipPk off\ shortLabel K562 HDAC2 3\ subGroups cellType=K562 factor=HDAC2\ track encTfChipPkENCFF618YRQ\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_fwd LymphaticEndothelialCellsToVegfc_08hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward 0 577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_fwd LymphaticEndothelialCellsToVegfc_08hrBr3+ bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward 1 577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3+\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=forward\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ ENCFF969AJT ENCFF969AJT bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (4) H3K27ac, ENCFF969AJT 2 578 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF969AJT.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (4) H3K27ac, ENCFF969AJT\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 74.3\ shortLabel ENCFF969AJT\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO847KYQ dataType=typeH3k27ac\ track ENCFF969AJT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF064TDQ ENCSR000BTY Peak bigBed 5 Ishikawa MAX peaks 4 578 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/b3bf70fa-7f2a-45a5-88be-045fb5d3d408/ENCFF064TDQ.bigBed\ labelFields none\ longLabel Ishikawa MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF064TDQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF728MWG ENCSR000ENX Signal bigWig Dermis blood vessel endothelial cell female adult DNase signal 2 578 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/134d6a91-826e-451f-adac-b2400476c6a5/ENCFF728MWG.bigWig\ color 6,218,147\ longLabel Dermis blood vessel endothelial cell female adult DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENX Signal\ track wgEncodeReg4Epigenetics_ENCFF728MWG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF776YAA ENCSR504QMK - strand bigWig Right lobe of liver tissue female adult (53 years) - strand total RNA-seq signal 2 578 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/20/4f77f557-6710-40b8-9998-26f1e6bef5e0/ENCFF776YAA.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR504QMK - strand\ track wgEncodeReg4RnaSeq_ENCFF776YAA\ type bigWig\ visibility full\ encTfChipPkENCFF742LSD K562 HDAC3 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC3 in K562 from ENCODE 3 (ENCFF742LSD) 0 578 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC3 in K562 from ENCODE 3 (ENCFF742LSD)\ parent encTfChipPk off\ shortLabel K562 HDAC3\ subGroups cellType=K562 factor=HDAC3\ track encTfChipPkENCFF742LSD\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_rev LymphaticEndothelialCellsToVegfc_08hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse 0 578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_rev LymphaticEndothelialCellsToVegfc_08hrBr3- bigWig Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse 1 578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lymphatic%20Endothelial%20cells%20response%20to%20VEGFC%2c%2008hr%2c%20biol_rep3%20%28MM%20XXII%20-%2016%29.CNhs13291.12519-133B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lymphatic Endothelial cells response to VEGFC, 08hr, biol_rep3 (MM XXII - 16)_CNhs13291_12519-133B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12519-133B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphaticEndothelialCellsToVegfc_08hrBr3-\ subGroups sequenceTech=hCAGE category=Lymphatic_EC_response_to_VEGFC strand=reverse\ track LymphaticEndothelialCellsResponseToVEGFC08hrBiolRep3MMXXII16_CNhs13291_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12519-133B8\ urlLabel FANTOM5 Details:\ ENCFF380WZB ENCFF380WZB bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (4) H3K27ac, ENCFF380WZB 2 579 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF380WZB.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (4) H3K27ac, ENCFF380WZB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 73.3\ shortLabel ENCFF380WZB\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO853VGZ dataType=typeH3k27ac\ track ENCFF380WZB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF047XQD ENCSR000BTY Signal bigWig Ishikawa MAX ENCSR000BTY signal 2 579 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3da4f523-1913-4d1c-9c9e-20a8873fef48/ENCFF047XQD.bigWig\ color 186,111,165\ longLabel Ishikawa MAX ENCSR000BTY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTY Signal\ track wgEncodeReg4TfChip_ENCFF047XQD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF148ELK ENCSR000ENY Peak bigBed 5 Dermis blood vessel endothelial cell female adult DNase peak 4 579 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/9c20af83-b12a-45bf-a20e-55586a6767bc/ENCFF148ELK.bigBed\ color 6,218,147\ labelFields none\ longLabel Dermis blood vessel endothelial cell female adult DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENY Peak\ track wgEncodeReg4Epigenetics_ENCFF148ELK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF280YRS ENCSR504VXC + strand bigWig A375 + strand total RNA-seq signal 2 579 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/0e0f11d3-7951-4a44-a072-24cb2ddc73da/ENCFF280YRS.bigWig\ color 127,133,209\ longLabel A375 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR504VXC + strand\ track wgEncodeReg4RnaSeq_ENCFF280YRS\ type bigWig\ visibility full\ encTfChipPkENCFF295GBP K562 HDAC6 narrowPeak Transcription Factor ChIP-seq Peaks of HDAC6 in K562 from ENCODE 3 (ENCFF295GBP) 0 579 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HDAC6 in K562 from ENCODE 3 (ENCFF295GBP)\ parent encTfChipPk off\ shortLabel K562 HDAC6\ subGroups cellType=K562 factor=HDAC6\ track encTfChipPkENCFF295GBP\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_fwd Mcf7ToEgf1_08hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward 0 579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr1+\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_fwd Mcf7ToEgf1_08hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward 1 579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr1+\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ ENCFF419XHK ENCFF419XHK bigWig Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF419XHK 2 580 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF419XHK.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF419XHK\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 93.3\ shortLabel ENCFF419XHK\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO877NVF dataType=typeH3k27ac\ track ENCFF419XHK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF967PDP ENCSR000BTZ Peak bigBed 5 SK-N-SH USF1 peaks 4 580 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/58b6a8f6-bdc6-40ba-92db-b4814196525b/ENCFF967PDP.bigBed\ labelFields none\ longLabel SK-N-SH USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF967PDP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF300EKW ENCSR000ENY Signal bigWig Dermis blood vessel endothelial cell female adult DNase signal 2 580 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/617698e7-e95b-4bec-a23a-81e654f25460/ENCFF300EKW.bigWig\ color 6,218,147\ longLabel Dermis blood vessel endothelial cell female adult DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENY Signal\ track wgEncodeReg4Epigenetics_ENCFF300EKW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF668XTN ENCSR504VXC - strand bigWig A375 - strand total RNA-seq signal 2 580 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/7df8d584-468d-4426-a10d-3bd7c1468bca/ENCFF668XTN.bigWig\ color 127,133,209\ longLabel A375 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR504VXC - strand\ track wgEncodeReg4RnaSeq_ENCFF668XTN\ type bigWig\ visibility full\ encTfChipPkENCFF010OOE K562 HES1 narrowPeak Transcription Factor ChIP-seq Peaks of HES1 in K562 from ENCODE 3 (ENCFF010OOE) 0 580 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HES1 in K562 from ENCODE 3 (ENCFF010OOE)\ parent encTfChipPk off\ shortLabel K562 HES1\ subGroups cellType=K562 factor=HES1\ track encTfChipPkENCFF010OOE\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_rev Mcf7ToEgf1_08hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse 0 580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr1-\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_rev Mcf7ToEgf1_08hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse 1 580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep1.CNhs12565.13046-139G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep1_CNhs12565_13046-139G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13046-139G4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr1-\ subGroups sequenceTech=LQhCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep1_CNhs12565_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13046-139G4\ urlLabel FANTOM5 Details:\ ENCFF472UDH ENCFF472UDH bigWig Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (4) H3K27ac, ENCFF472UDH 2 581 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF472UDH.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (4) H3K27ac, ENCFF472UDH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 67.3\ shortLabel ENCFF472UDH\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__74_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO907CMO dataType=typeH3k27ac\ track ENCFF472UDH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF925RPJ ENCSR000BTZ Signal bigWig SK-N-SH USF1 ENCSR000BTZ signal 2 581 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/72bfea36-9ab2-4d62-b150-d53482876cdf/ENCFF925RPJ.bigWig\ color 155,155,18\ longLabel SK-N-SH USF1 ENCSR000BTZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BTZ Signal\ track wgEncodeReg4TfChip_ENCFF925RPJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF901CVE ENCSR000ENZ Peak bigBed 5 Dermis blood vessel endothelial cell male newborn DNase peak 4 581 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/a3f0ab68-73f1-48c3-8db7-f1a167cb1722/ENCFF901CVE.bigBed\ color 6,218,147\ labelFields none\ longLabel Dermis blood vessel endothelial cell male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENZ Peak\ track wgEncodeReg4Epigenetics_ENCFF901CVE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF833QMT ENCSR510MIA + strand bigWig Esophagus squamous epithelium tissue female adult (51 years) + strand total RNA-seq signal 2 581 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/8fe2913b-438c-458f-b9e8-9893296ea960/ENCFF833QMT.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR510MIA + strand\ track wgEncodeReg4RnaSeq_ENCFF833QMT\ type bigWig\ visibility full\ encTfChipPkENCFF718DFX K562 HMBOX1 narrowPeak Transcription Factor ChIP-seq Peaks of HMBOX1 in K562 from ENCODE 3 (ENCFF718DFX) 0 581 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HMBOX1 in K562 from ENCODE 3 (ENCFF718DFX)\ parent encTfChipPk off\ shortLabel K562 HMBOX1\ subGroups cellType=K562 factor=HMBOX1\ track encTfChipPkENCFF718DFX\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_fwd Mcf7ToEgf1_00hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward 0 581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_fwd Mcf7ToEgf1_00hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward 1 581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ ENCFF383TGX ENCFF383TGX bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF383TGX 2 582 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF383TGX.bw\ color 255,205,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (4) H3K27ac, ENCFF383TGX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 84.3\ shortLabel ENCFF383TGX\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO915WZE dataType=typeH3k27ac\ track ENCFF383TGX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF451CNG ENCSR000BUA Peak bigBed 5 SK-N-SH EP300 peaks 4 582 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/64d81627-b369-4014-83b7-4304995d98c0/ENCFF451CNG.bigBed\ labelFields none\ longLabel SK-N-SH EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF451CNG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF241BAF ENCSR000ENZ Signal bigWig Dermis blood vessel endothelial cell male newborn DNase signal 2 582 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/16bff0cf-5b60-44e8-a2c3-66e039e73f02/ENCFF241BAF.bigWig\ color 6,218,147\ longLabel Dermis blood vessel endothelial cell male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000ENZ Signal\ track wgEncodeReg4Epigenetics_ENCFF241BAF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF174FTO ENCSR510MIA - strand bigWig Esophagus squamous epithelium tissue female adult (51 years) - strand total RNA-seq signal 2 582 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/8b9e4355-5dda-45e2-a9e3-41baa1736fa2/ENCFF174FTO.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR510MIA - strand\ track wgEncodeReg4RnaSeq_ENCFF174FTO\ type bigWig\ visibility full\ encTfChipPkENCFF844QFF K562 HNRNPH1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPH1 in K562 from ENCODE 3 (ENCFF844QFF) 0 582 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPH1 in K562 from ENCODE 3 (ENCFF844QFF)\ parent encTfChipPk off\ shortLabel K562 HNRNPH1\ subGroups cellType=K562 factor=HNRNPH1\ track encTfChipPkENCFF844QFF\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_rev Mcf7ToEgf1_00hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse 0 582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_rev Mcf7ToEgf1_00hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse 1 582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep2.CNhs12475.13097-140D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep2_CNhs12475_13097-140D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13097-140D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep2_CNhs12475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13097-140D1\ urlLabel FANTOM5 Details:\ ENCFF685BLE ENCFF685BLE bigWig Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (4) H3K27ac, ENCFF685BLE 2 583 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF685BLE.bw\ color 255,205,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (4) H3K27ac, ENCFF685BLE\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 70.3\ shortLabel ENCFF685BLE\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__86_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO997SGX dataType=typeH3k27ac\ track ENCFF685BLE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF613ZSN ENCSR000BUA Signal bigWig SK-N-SH EP300 ENCSR000BUA signal 2 583 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/bfe3356b-ce9c-4876-a6eb-5a068e396c1d/ENCFF613ZSN.bigWig\ color 155,155,18\ longLabel SK-N-SH EP300 ENCSR000BUA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUA Signal\ track wgEncodeReg4TfChip_ENCFF613ZSN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF335UNH ENCSR000EOA Peak bigBed 5 Dermis microvascular lymphatic vessel endothelial cell female DNase peak 4 583 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/a000f708-e986-436c-ac7f-e83942145c6c/ENCFF335UNH.bigBed\ color 6,218,147\ labelFields none\ longLabel Dermis microvascular lymphatic vessel endothelial cell female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOA Peak\ track wgEncodeReg4Epigenetics_ENCFF335UNH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF149RKR ENCSR515MED + strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 583 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/5d9ee3a3-dd67-4223-b4a5-1f4d4685facd/ENCFF149RKR.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR515MED + strand\ track wgEncodeReg4RnaSeq_ENCFF149RKR\ type bigWig\ visibility full\ encTfChipPkENCFF984QUV K562 HNRNPK narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPK in K562 from ENCODE 3 (ENCFF984QUV) 0 583 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPK in K562 from ENCODE 3 (ENCFF984QUV)\ parent encTfChipPk off\ shortLabel K562 HNRNPK\ subGroups cellType=K562 factor=HNRNPK\ track encTfChipPkENCFF984QUV\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_fwd Mcf7ToEgf1_00hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward 0 583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_fwd Mcf7ToEgf1_00hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward 1 583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ ENCFF646KVN ENCFF646KVN bigWig Middle frontal area 46, male adult (84 years): (4) H3K27ac, ENCFF646KVN 2 584 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF646KVN.bw\ color 255,205,0\ longLabel Middle frontal area 46, male adult (84 years): (4) H3K27ac, ENCFF646KVN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 112.3\ shortLabel ENCFF646KVN\ subGroups organ=brain view=H3K27ac_view simpleBiosample=middle_frontal_area_46-_male_adult__84_years_ biosampleType=tissue donor=ENCDO999WDR dataType=typeH3k27ac\ track ENCFF646KVN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF781RLJ ENCSR000BUB Peak bigBed 5 A549 CEBPB peaks 4 584 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e1ea21d1-f489-4a90-aa5c-1991e5a1b8dd/ENCFF781RLJ.bigBed\ labelFields none\ longLabel A549 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF781RLJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF871HUQ ENCSR000EOA Signal bigWig Dermis microvascular lymphatic vessel endothelial cell female DNase signal 2 584 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/d3e385e5-d188-4981-9a05-a1ab4cf03f02/ENCFF871HUQ.bigWig\ color 6,218,147\ longLabel Dermis microvascular lymphatic vessel endothelial cell female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOA Signal\ track wgEncodeReg4Epigenetics_ENCFF871HUQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF800KIJ ENCSR515MED - strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 584 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/c68e43eb-84f8-42f3-a490-523b8a378e83/ENCFF800KIJ.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR515MED - strand\ track wgEncodeReg4RnaSeq_ENCFF800KIJ\ type bigWig\ visibility full\ encTfChipPkENCFF984ESZ K562 HNRNPL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPL in K562 from ENCODE 3 (ENCFF984ESZ) 0 584 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPL in K562 from ENCODE 3 (ENCFF984ESZ)\ parent encTfChipPk off\ shortLabel K562 HNRNPL\ subGroups cellType=K562 factor=HNRNPL\ track encTfChipPkENCFF984ESZ\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_rev Mcf7ToEgf1_00hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse 0 584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_rev Mcf7ToEgf1_00hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse 1 584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep3.CNhs12703.13163-141B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep3_CNhs12703_13163-141B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13163-141B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep3_CNhs12703_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13163-141B4\ urlLabel FANTOM5 Details:\ ENCFF063VLJ ENCFF063VLJ bigWig MCF-7: (4) H3K27ac, ENCFF063VLJ 2 585 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF063VLJ.bw\ color 255,205,0\ longLabel MCF-7: (4) H3K27ac, ENCFF063VLJ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 65.3\ shortLabel ENCFF063VLJ\ subGroups organ=breast view=H3K27ac_view simpleBiosample=MCF-7 biosampleType=cell_line donor=ENCDO000AAE dataType=typeH3k27ac\ track ENCFF063VLJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF388AIS ENCSR000BUB Signal bigWig A549 CEBPB ENCSR000BUB signal 2 585 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e3351554-e13c-48f9-9787-fbc84bb6650e/ENCFF388AIS.bigWig\ color 130,163,45\ longLabel A549 CEBPB ENCSR000BUB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUB Signal\ track wgEncodeReg4TfChip_ENCFF388AIS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF686JWJ ENCSR000EOB Peak bigBed 5 Dermis microvascular lymphatic vessel endothelial cell male DNase peak 4 585 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/62b54d82-92cc-44fc-b39b-b420dfa82df5/ENCFF686JWJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Dermis microvascular lymphatic vessel endothelial cell male DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOB Peak\ track wgEncodeReg4Epigenetics_ENCFF686JWJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF672RNN ENCSR516BJM + strand bigWig Colonic mucosa tissue female child (16 years) + strand total RNA-seq signal 2 585 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/343600ec-0e49-47ff-a7c7-82ae2fcb37d1/ENCFF672RNN.bigWig\ color 86,86,36\ longLabel Colonic mucosa tissue female child (16 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR516BJM + strand\ track wgEncodeReg4RnaSeq_ENCFF672RNN\ type bigWig\ visibility full\ encTfChipPkENCFF662WPN K562 HNRNPLL narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPLL in K562 from ENCODE 3 (ENCFF662WPN) 0 585 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPLL in K562 from ENCODE 3 (ENCFF662WPN)\ parent encTfChipPk off\ shortLabel K562 HNRNPLL\ subGroups cellType=K562 factor=HNRNPLL\ track encTfChipPkENCFF662WPN\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_fwd Mcf7ToEgf1_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward 0 585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_fwd Mcf7ToEgf1_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward 1 585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ ENCFF085IYD ENCFF085IYD bigWig Breast epithelium, female adult (51 years): (4) H3K27ac, ENCFF085IYD 2 586 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF085IYD.bw\ color 255,205,0\ longLabel Breast epithelium, female adult (51 years): (4) H3K27ac, ENCFF085IYD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 17.3\ shortLabel ENCFF085IYD\ subGroups organ=breast view=H3K27ac_view simpleBiosample=breast_epithelium-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF085IYD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF047SFC ENCSR000BUC Peak bigBed 5 A549 RAD21 peaks 4 586 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a883c39f-3934-41df-b2c5-4524e538e00e/ENCFF047SFC.bigBed\ labelFields none\ longLabel A549 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF047SFC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF543IKD ENCSR000EOB Signal bigWig Dermis microvascular lymphatic vessel endothelial cell male DNase signal 2 586 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/b6b995e8-f0ed-4258-9261-3344b81dcb17/ENCFF543IKD.bigWig\ color 6,218,147\ longLabel Dermis microvascular lymphatic vessel endothelial cell male DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOB Signal\ track wgEncodeReg4Epigenetics_ENCFF543IKD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF354AAN ENCSR516BJM - strand bigWig Colonic mucosa tissue female child (16 years) - strand total RNA-seq signal 2 586 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/edc0ce86-02f3-4f9f-8c7f-40e4a7a2b9cd/ENCFF354AAN.bigWig\ color 86,86,36\ longLabel Colonic mucosa tissue female child (16 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR516BJM - strand\ track wgEncodeReg4RnaSeq_ENCFF354AAN\ type bigWig\ visibility full\ encTfChipPkENCFF991ZSC K562 HNRNPUL1 narrowPeak Transcription Factor ChIP-seq Peaks of HNRNPUL1 in K562 from ENCODE 3 (ENCFF991ZSC) 0 586 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of HNRNPUL1 in K562 from ENCODE 3 (ENCFF991ZSC)\ parent encTfChipPk off\ shortLabel K562 HNRNPUL1\ subGroups cellType=K562 factor=HNRNPUL1\ track encTfChipPkENCFF991ZSC\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_rev Mcf7ToEgf1_00hr15minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse 0 586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_rev Mcf7ToEgf1_00hr15minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse 1 586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep1.CNhs12420.13032-139E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep1_CNhs12420_13032-139E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13032-139E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep1_CNhs12420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13032-139E8\ urlLabel FANTOM5 Details:\ ENCFF317LGP ENCFF317LGP bigWig Chondrocyte, female embryo (5 days): (4) H3K27ac, ENCFF317LGP 2 587 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF317LGP.bw\ color 255,205,0\ longLabel Chondrocyte, female embryo (5 days): (4) H3K27ac, ENCFF317LGP\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 21.3\ shortLabel ENCFF317LGP\ subGroups organ=connective_tissue view=H3K27ac_view simpleBiosample=chondrocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF317LGP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF857RPR ENCSR000BUC Signal bigWig A549 RAD21 ENCSR000BUC signal 2 587 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/b46ca946-9714-43a5-9cfd-1f23cc7eacf2/ENCFF857RPR.bigWig\ color 130,163,45\ longLabel A549 RAD21 ENCSR000BUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUC Signal\ track wgEncodeReg4TfChip_ENCFF857RPR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF882DYG ENCSR000EOC Peak bigBed 5 Dermis blood vessel endothelial cell male newborn DNase peak 4 587 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/10091c8b-8014-4a43-9c93-5434c8032c57/ENCFF882DYG.bigBed\ color 6,218,147\ labelFields none\ longLabel Dermis blood vessel endothelial cell male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOC Peak\ track wgEncodeReg4Epigenetics_ENCFF882DYG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF709QRA ENCSR516TTH + strand bigWig Left ventricle myocardium inferior tissue male adult (60 years) + strand total RNA-seq signal 2 587 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/02ab924f-88b2-4f78-88ed-923f58645d9c/ENCFF709QRA.bigWig\ color 116,50,165\ longLabel Left ventricle myocardium inferior tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR516TTH + strand\ track wgEncodeReg4RnaSeq_ENCFF709QRA\ type bigWig\ visibility full\ encTfChipPkENCFF785BTP K562 IKZF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF785BTP) 0 587 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF785BTP)\ parent encTfChipPk off\ shortLabel K562 IKZF1 1\ subGroups cellType=K562 factor=IKZF1\ track encTfChipPkENCFF785BTP\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_fwd Mcf7ToEgf1_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward 0 587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_fwd Mcf7ToEgf1_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward 1 587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ ENCFF919FBG ENCFF919FBG bigWig H1: (4) H3K27ac, ENCFF919FBG 2 588 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF919FBG.bw\ color 255,205,0\ longLabel H1: (4) H3K27ac, ENCFF919FBG\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 37.3\ shortLabel ENCFF919FBG\ subGroups organ=embryo view=H3K27ac_view simpleBiosample=H1 biosampleType=cell_line donor=ENCDO000AAW dataType=typeH3k27ac\ track ENCFF919FBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF243FTL ENCSR000BUD Peak bigBed 5 A549 TEAD4 peaks 4 588 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/47cf06be-beed-4419-88ea-860c2d9712ab/ENCFF243FTL.bigBed\ labelFields none\ longLabel A549 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF243FTL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF532TGN ENCSR000EOC Signal bigWig Dermis blood vessel endothelial cell male newborn DNase signal 2 588 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/77fac24b-e588-47f4-adb9-e8f5dd0b8da9/ENCFF532TGN.bigWig\ color 6,218,147\ longLabel Dermis blood vessel endothelial cell male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOC Signal\ track wgEncodeReg4Epigenetics_ENCFF532TGN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF009NID ENCSR516TTH - strand bigWig Left ventricle myocardium inferior tissue male adult (60 years) - strand total RNA-seq signal 2 588 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/5996f2ca-310c-4fd4-a612-58538109aa90/ENCFF009NID.bigWig\ color 116,50,165\ longLabel Left ventricle myocardium inferior tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR516TTH - strand\ track wgEncodeReg4RnaSeq_ENCFF009NID\ type bigWig\ visibility full\ encTfChipPkENCFF994OQH K562 IKZF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF994OQH) 0 588 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IKZF1 in K562 from ENCODE 3 (ENCFF994OQH)\ parent encTfChipPk off\ shortLabel K562 IKZF1 2\ subGroups cellType=K562 factor=IKZF1\ track encTfChipPkENCFF994OQH\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_rev Mcf7ToEgf1_00hr15minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse 0 588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_rev Mcf7ToEgf1_00hr15minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse 1 588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep2.CNhs12476.13098-140D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep2_CNhs12476_13098-140D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13098-140D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep2_CNhs12476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13098-140D2\ urlLabel FANTOM5 Details:\ ENCFF988WEQ ENCFF988WEQ bigWig H9: (4) H3K27ac, ENCFF988WEQ 2 589 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF988WEQ.bw\ color 255,205,0\ longLabel H9: (4) H3K27ac, ENCFF988WEQ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 38.3\ shortLabel ENCFF988WEQ\ subGroups organ=embryo view=H3K27ac_view simpleBiosample=H9 biosampleType=cell_line donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF988WEQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF848NSF ENCSR000BUD Signal bigWig A549 TEAD4 ENCSR000BUD signal 2 589 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/977ad6c7-f7e9-4d33-9a24-d348a4dc20a7/ENCFF848NSF.bigWig\ color 130,163,45\ longLabel A549 TEAD4 ENCSR000BUD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUD Signal\ track wgEncodeReg4TfChip_ENCFF848NSF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF398HPO ENCSR000EOD Peak bigBed 5 Lung microvascular endothelial cell female DNase peak 4 589 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/5673a134-af4b-4476-99a2-04239cde1b32/ENCFF398HPO.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung microvascular endothelial cell female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOD Peak\ track wgEncodeReg4Epigenetics_ENCFF398HPO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF886ULO ENCSR521ZFP + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 589 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/62012d98-1411-4050-b328-1c9b09cfeef6/ENCFF886ULO.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR521ZFP + strand\ track wgEncodeReg4RnaSeq_ENCFF886ULO\ type bigWig\ visibility full\ encTfChipPkENCFF978BBL K562 IRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF978BBL) 0 589 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF978BBL)\ parent encTfChipPk off\ shortLabel K562 IRF1 1\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF978BBL\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_fwd Mcf7ToEgf1_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward 0 589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_fwd Mcf7ToEgf1_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward 1 589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ ENCFF504UNY ENCFF504UNY bigWig Endodermal cell, female embryo (5 days): (4) H3K27ac, ENCFF504UNY 2 590 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF504UNY.bw\ color 255,205,0\ longLabel Endodermal cell, female embryo (5 days): (4) H3K27ac, ENCFF504UNY\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 25.3\ shortLabel ENCFF504UNY\ subGroups organ=embryo view=H3K27ac_view simpleBiosample=endodermal_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF504UNY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF364ZWT ENCSR000BUE Peak bigBed 5 Ishikawa EP300 peaks 4 590 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/9567e035-e75f-4380-80f4-b7bbc4e18314/ENCFF364ZWT.bigBed\ labelFields none\ longLabel Ishikawa EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF364ZWT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF561TJC ENCSR000EOD Signal bigWig Lung microvascular endothelial cell female DNase signal 2 590 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/66bc1c66-c9ff-458d-9dc9-4e01db9ce1bf/ENCFF561TJC.bigWig\ color 6,218,147\ longLabel Lung microvascular endothelial cell female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOD Signal\ track wgEncodeReg4Epigenetics_ENCFF561TJC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF324SIB ENCSR521ZFP - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 590 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/57af7beb-8310-4c94-aba5-c9b9d901c15e/ENCFF324SIB.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR521ZFP - strand\ track wgEncodeReg4RnaSeq_ENCFF324SIB\ type bigWig\ visibility full\ encTfChipPkENCFF688XON K562 IRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF688XON) 0 590 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF688XON)\ parent encTfChipPk off\ shortLabel K562 IRF1 2\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF688XON\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_rev Mcf7ToEgf1_00hr15minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse 0 590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_rev Mcf7ToEgf1_00hr15minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse 1 590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr15min%2c%20biol_rep3.CNhs12704.13164-141B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr15min, biol_rep3_CNhs12704_13164-141B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13164-141B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr15minBiolRep3_CNhs12704_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13164-141B5\ urlLabel FANTOM5 Details:\ ENCFF708DDX ENCFF708DDX bigWig Endothelial cell, male adult (53 years): (4) H3K27ac, ENCFF708DDX 2 591 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF708DDX.bw\ color 255,205,0\ longLabel Endothelial cell, male adult (53 years): (4) H3K27ac, ENCFF708DDX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 26.3\ shortLabel ENCFF708DDX\ subGroups organ=epithelium view=H3K27ac_view simpleBiosample=endothelial_cell-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k27ac\ track ENCFF708DDX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF234CXZ ENCSR000BUE Signal bigWig Ishikawa EP300 ENCSR000BUE signal 2 591 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0aba403b-8628-4d63-9517-a1c6c9da54bb/ENCFF234CXZ.bigWig\ color 186,111,165\ longLabel Ishikawa EP300 ENCSR000BUE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUE Signal\ track wgEncodeReg4TfChip_ENCFF234CXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF984DGA ENCSR000EOE Peak bigBed 5 Lung microvascular endothelial cell female DNase peak 4 591 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/07918438-5d4a-4928-b5af-2a08276a4710/ENCFF984DGA.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung microvascular endothelial cell female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOE Peak\ track wgEncodeReg4Epigenetics_ENCFF984DGA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF901ATL ENCSR523RGW + strand bigWig Pancreas tissue female adult (47 years) + strand total RNA-seq signal 2 591 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/3f4db851-0f13-42b6-af5d-a8c4cee4b6a0/ENCFF901ATL.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR523RGW + strand\ track wgEncodeReg4RnaSeq_ENCFF901ATL\ type bigWig\ visibility full\ encTfChipPkENCFF938NBD K562 IRF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF938NBD) 0 591 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF938NBD)\ parent encTfChipPk off\ shortLabel K562 IRF1 3\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF938NBD\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_fwd Mcf7ToEgf1_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward 0 591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_fwd Mcf7ToEgf1_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward 1 591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ ENCFF037TME ENCFF037TME bigWig Esophagus squamous epithelium, male adult (37 years): (4) H3K27ac, ENCFF037TME 2 592 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF037TME.bw\ color 255,205,0\ longLabel Esophagus squamous epithelium, male adult (37 years): (4) H3K27ac, ENCFF037TME\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 28.3\ shortLabel ENCFF037TME\ subGroups organ=esophagus view=H3K27ac_view simpleBiosample=esophagus_squamous_epithelium-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF037TME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF870CVH ENCSR000BUF Peak bigBed 5 GM12878 CREB1 peaks 4 592 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/994a990c-af82-4409-8b49-3b8df0b51ece/ENCFF870CVH.bigBed\ labelFields none\ longLabel GM12878 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF870CVH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF902EBP ENCSR000EOE Signal bigWig Lung microvascular endothelial cell female DNase signal 2 592 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/0b640035-7eaa-401a-bf48-fc6bef799141/ENCFF902EBP.bigWig\ color 6,218,147\ longLabel Lung microvascular endothelial cell female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOE Signal\ track wgEncodeReg4Epigenetics_ENCFF902EBP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF832EEZ ENCSR523RGW - strand bigWig Pancreas tissue female adult (47 years) - strand total RNA-seq signal 2 592 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/de2ca64b-b88d-4a37-931c-fb837a3d575a/ENCFF832EEZ.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR523RGW - strand\ track wgEncodeReg4RnaSeq_ENCFF832EEZ\ type bigWig\ visibility full\ encTfChipPkENCFF346LMY K562 IRF1 4 narrowPeak Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF346LMY) 0 592 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF1 in K562 from ENCODE 3 (ENCFF346LMY)\ parent encTfChipPk off\ shortLabel K562 IRF1 4\ subGroups cellType=K562 factor=IRF1\ track encTfChipPkENCFF346LMY\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_rev Mcf7ToEgf1_00hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse 0 592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_rev Mcf7ToEgf1_00hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse 1 592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep1.CNhs12421.13033-139E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep1_CNhs12421_13033-139E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13033-139E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep1_CNhs12421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13033-139E9\ urlLabel FANTOM5 Details:\ ENCFF949IKU ENCFF949IKU bigWig WERI-Rb-1: (4) H3K27ac, ENCFF949IKU 2 593 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF949IKU.bw\ color 255,205,0\ longLabel WERI-Rb-1: (4) H3K27ac, ENCFF949IKU\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 170.3\ shortLabel ENCFF949IKU\ subGroups organ=eye view=H3K27ac_view simpleBiosample=WERI-Rb-1 biosampleType=cell_line donor=ENCDO000ADT dataType=typeH3k27ac\ track ENCFF949IKU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF795MDW ENCSR000BUF Signal bigWig GM12878 CREB1 ENCSR000BUF signal 2 593 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/8c56598b-8132-4c95-9f54-68ba2e76bfcd/ENCFF795MDW.bigWig\ color 254,75,173\ longLabel GM12878 CREB1 ENCSR000BUF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUF Signal\ track wgEncodeReg4TfChip_ENCFF795MDW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF790UKP ENCSR000EOF Peak bigBed 5 Non-pigmented ciliary epithelial cell DNase peak 4 593 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/a2820a84-8f2b-464d-aea7-6e739dc02f43/ENCFF790UKP.bigBed\ color 6,218,147\ labelFields none\ longLabel Non-pigmented ciliary epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOF Peak\ track wgEncodeReg4Epigenetics_ENCFF790UKP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF069OIK ENCSR528ZKN + strand bigWig Gastroesophageal sphincter tissue male adult (37 years) + strand total RNA-seq signal 2 593 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/0f5ca991-c474-4d0b-80c8-0828b0f23579/ENCFF069OIK.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR528ZKN + strand\ track wgEncodeReg4RnaSeq_ENCFF069OIK\ type bigWig\ visibility full\ encTfChipPkENCFF886EVL K562 IRF2 narrowPeak Transcription Factor ChIP-seq Peaks of IRF2 in K562 from ENCODE 3 (ENCFF886EVL) 0 593 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of IRF2 in K562 from ENCODE 3 (ENCFF886EVL)\ parent encTfChipPk off\ shortLabel K562 IRF2\ subGroups cellType=K562 factor=IRF2\ track encTfChipPkENCFF886EVL\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_fwd Mcf7ToEgf1_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward 0 593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_fwd Mcf7ToEgf1_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward 1 593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ ENCFF109WCV ENCFF109WCV bigWig Mesothelial cell of epicardium, female embryo (5 days): (4) H3K27ac, ENCFF109WCV 2 594 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF109WCV.bw\ color 255,205,0\ longLabel Mesothelial cell of epicardium, female embryo (5 days): (4) H3K27ac, ENCFF109WCV\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 66.3\ shortLabel ENCFF109WCV\ subGroups organ=heart view=H3K27ac_view simpleBiosample=mesothelial_cell_of_epicardium-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF109WCV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF088WVX ENCSR000BUG Peak bigBed 5 HCT116 ATF3 peaks 4 594 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/e3f4d959-0d2b-4845-9136-e4d739a038a2/ENCFF088WVX.bigBed\ labelFields none\ longLabel HCT116 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF088WVX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF431XMC ENCSR000EOF Signal bigWig Non-pigmented ciliary epithelial cell DNase signal 2 594 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/321bf6c3-cabb-497d-83ab-21313848186e/ENCFF431XMC.bigWig\ color 6,218,147\ longLabel Non-pigmented ciliary epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOF Signal\ track wgEncodeReg4Epigenetics_ENCFF431XMC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF135LQG ENCSR528ZKN - strand bigWig Gastroesophageal sphincter tissue male adult (37 years) - strand total RNA-seq signal 2 594 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/8f9405b3-54cc-43d7-881b-9752dc68602d/ENCFF135LQG.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR528ZKN - strand\ track wgEncodeReg4RnaSeq_ENCFF135LQG\ type bigWig\ visibility full\ encTfChipPkENCFF881AVX K562 JUN 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF881AVX) 0 594 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF881AVX)\ parent encTfChipPk off\ shortLabel K562 JUN 1\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF881AVX\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_rev Mcf7ToEgf1_00hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse 0 594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_rev Mcf7ToEgf1_00hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse 1 594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep2.CNhs12477.13099-140D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep2_CNhs12477_13099-140D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13099-140D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep2_CNhs12477_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13099-140D3\ urlLabel FANTOM5 Details:\ ENCFF791CAJ ENCFF791CAJ bigWig Right atrium auricular region, female adult (51 years): (4) H3K27ac, ENCFF791CAJ 2 595 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF791CAJ.bw\ color 255,205,0\ longLabel Right atrium auricular region, female adult (51 years): (4) H3K27ac, ENCFF791CAJ\ maxHeightPixels 30\ parent H3K27ac_view on\ priority 133.3\ shortLabel ENCFF791CAJ\ subGroups organ=heart view=H3K27ac_view simpleBiosample=right_atrium_auricular_region-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF791CAJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF388DEA ENCSR000BUG Signal bigWig HCT116 ATF3 ENCSR000BUG signal 2 595 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/c1fc87b5-00e4-4860-9604-d4c06d4655b8/ENCFF388DEA.bigWig\ color 86,86,36\ longLabel HCT116 ATF3 ENCSR000BUG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUG Signal\ track wgEncodeReg4TfChip_ENCFF388DEA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF768GYH ENCSR000EOG Peak bigBed 5 Pulmonary artery endothelial cell female DNase peak 4 595 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/2deb0ed5-85e1-4e77-87a0-ccf758f361df/ENCFF768GYH.bigBed\ color 6,218,147\ labelFields none\ longLabel Pulmonary artery endothelial cell female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOG Peak\ track wgEncodeReg4Epigenetics_ENCFF768GYH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF212SAI ENCSR530ESE + strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (84 years) + strand total RNA-seq signal 2 595 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/a80a78e7-78f9-4119-a066-873c00e50db6/ENCFF212SAI.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (84 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR530ESE + strand\ track wgEncodeReg4RnaSeq_ENCFF212SAI\ type bigWig\ visibility full\ encTfChipPkENCFF672LKE K562 JUN 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF672LKE) 0 595 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF672LKE)\ parent encTfChipPk off\ shortLabel K562 JUN 2\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF672LKE\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_fwd Mcf7ToEgf1_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward 0 595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_fwd Mcf7ToEgf1_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward 1 595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ ENCFF378PDO ENCFF378PDO bigWig Heart right ventricle, male adult (40 years): (4) H3K27ac, ENCFF378PDO 2 596 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF378PDO.bw\ color 255,205,0\ longLabel Heart right ventricle, male adult (40 years): (4) H3K27ac, ENCFF378PDO\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 47.3\ shortLabel ENCFF378PDO\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_right_ventricle-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeH3k27ac\ track ENCFF378PDO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF947BOL ENCSR000BUH Peak bigBed 5 HCT116 CBX3 peaks 4 596 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/34298442-18c3-4d5a-a53c-5ff53e1f9811/ENCFF947BOL.bigBed\ labelFields none\ longLabel HCT116 CBX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF947BOL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF019DLM ENCSR000EOG Signal bigWig Pulmonary artery endothelial cell female DNase signal 2 596 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/d5dc8680-de26-4f1d-a3d6-4fd39c20e3fd/ENCFF019DLM.bigWig\ color 6,218,147\ longLabel Pulmonary artery endothelial cell female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOG Signal\ track wgEncodeReg4Epigenetics_ENCFF019DLM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF561WGZ ENCSR530ESE - strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (84 years) - strand total RNA-seq signal 2 596 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/055b7512-a60f-43f5-8d0e-23c977a1e029/ENCFF561WGZ.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (84 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR530ESE - strand\ track wgEncodeReg4RnaSeq_ENCFF561WGZ\ type bigWig\ visibility full\ encTfChipPkENCFF167WUZ K562 JUN 3 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF167WUZ) 0 596 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF167WUZ)\ parent encTfChipPk off\ shortLabel K562 JUN 3\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF167WUZ\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_rev Mcf7ToEgf1_00hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse 0 596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_rev Mcf7ToEgf1_00hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse 1 596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr30min%2c%20biol_rep3.CNhs12738.13165-141B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr30min, biol_rep3_CNhs12738_13165-141B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13165-141B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr30minBiolRep3_CNhs12738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13165-141B6\ urlLabel FANTOM5 Details:\ ENCFF352YYH ENCFF352YYH bigWig Heart left ventricle, female adult (46 years): (4) H3K27ac, ENCFF352YYH 2 597 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF352YYH.bw\ color 255,205,0\ longLabel Heart left ventricle, female adult (46 years): (4) H3K27ac, ENCFF352YYH\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 40.3\ shortLabel ENCFF352YYH\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_left_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeH3k27ac\ track ENCFF352YYH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF845YDA ENCSR000BUH Signal bigWig HCT116 CBX3 ENCSR000BUH signal 2 597 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/f3379bf9-1efc-41ca-b15c-f7cdfab77474/ENCFF845YDA.bigWig\ color 86,86,36\ longLabel HCT116 CBX3 ENCSR000BUH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUH Signal\ track wgEncodeReg4TfChip_ENCFF845YDA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF605PMF ENCSR000EOH Peak bigBed 5 Fibroblast of pulmonary artery DNase peak 4 597 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/e94779ee-5c76-464b-92f9-eafbcf4f34a3/ENCFF605PMF.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of pulmonary artery DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOH Peak\ track wgEncodeReg4Epigenetics_ENCFF605PMF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF401ALX ENCSR530OOO + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 597 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/09867518-163f-4534-b235-bcd18737f03b/ENCFF401ALX.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR530OOO + strand\ track wgEncodeReg4RnaSeq_ENCFF401ALX\ type bigWig\ visibility full\ encTfChipPkENCFF394CEC K562 JUN 4 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF394CEC) 0 597 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF394CEC)\ parent encTfChipPk off\ shortLabel K562 JUN 4\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF394CEC\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_fwd Mcf7ToEgf1_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward 0 597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_fwd Mcf7ToEgf1_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward 1 597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ ENCFF406YGS ENCFF406YGS bigWig Heart right ventricle, female adult (46 years): (4) H3K27ac, ENCFF406YGS 2 598 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF406YGS.bw\ color 255,205,0\ longLabel Heart right ventricle, female adult (46 years): (4) H3K27ac, ENCFF406YGS\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 45.3\ shortLabel ENCFF406YGS\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_right_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeH3k27ac\ track ENCFF406YGS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF716UWP ENCSR000BUI Peak bigBed 5 MCF-7 FOSL2 peaks 4 598 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/48610f0a-f447-4b42-93f9-88fd30d7021d/ENCFF716UWP.bigBed\ labelFields none\ longLabel MCF-7 FOSL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF716UWP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF070KKO ENCSR000EOH Signal bigWig Fibroblast of pulmonary artery DNase signal 2 598 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/6216e85b-5e92-4538-affe-820f95dab159/ENCFF070KKO.bigWig\ color 6,218,147\ longLabel Fibroblast of pulmonary artery DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOH Signal\ track wgEncodeReg4Epigenetics_ENCFF070KKO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF619JUZ ENCSR530OOO - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 598 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/4a7ec25b-f4a5-4d90-9e26-3619e1913ffd/ENCFF619JUZ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR530OOO - strand\ track wgEncodeReg4RnaSeq_ENCFF619JUZ\ type bigWig\ visibility full\ encTfChipPkENCFF032UMW K562 JUN 5 narrowPeak Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF032UMW) 0 598 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUN in K562 from ENCODE 3 (ENCFF032UMW)\ parent encTfChipPk off\ shortLabel K562 JUN 5\ subGroups cellType=K562 factor=JUN\ track encTfChipPkENCFF032UMW\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_rev Mcf7ToEgf1_00hr45minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse 0 598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_rev Mcf7ToEgf1_00hr45minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse 1 598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep1.CNhs12422.13034-139F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep1_CNhs12422_13034-139F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13034-139F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep1_CNhs12422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13034-139F1\ urlLabel FANTOM5 Details:\ ENCFF346GTT ENCFF346GTT bigWig Heart right ventricle, male adult (69 years): (4) H3K27ac, ENCFF346GTT 2 599 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF346GTT.bw\ color 255,205,0\ longLabel Heart right ventricle, male adult (69 years): (4) H3K27ac, ENCFF346GTT\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 51.3\ shortLabel ENCFF346GTT\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_right_ventricle-_male_adult__69_years_ biosampleType=tissue donor=ENCDO477WED dataType=typeH3k27ac\ track ENCFF346GTT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF510CWC ENCSR000BUI Signal bigWig MCF-7 FOSL2 ENCSR000BUI signal 2 599 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/8cba85f6-daac-4c4c-9fd5-c3a58ab24049/ENCFF510CWC.bigWig\ color 65,171,173\ longLabel MCF-7 FOSL2 ENCSR000BUI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUI Signal\ track wgEncodeReg4TfChip_ENCFF510CWC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF600SFJ ENCSR000EOI Peak bigBed 5 Fibroblast of peridontal ligament male DNase peak 4 599 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/c2df6041-8abb-4f82-bfbc-a20ac5d0df89/ENCFF600SFJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of peridontal ligament male DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOI Peak\ track wgEncodeReg4Epigenetics_ENCFF600SFJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF744XXD ENCSR532LJV + strand bigWig Thyroid gland tissue male adult (37 years) + strand total RNA-seq signal 2 599 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/80d9a146-2bdc-43c3-aaff-e9c4637ee85c/ENCFF744XXD.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR532LJV + strand\ track wgEncodeReg4RnaSeq_ENCFF744XXD\ type bigWig\ visibility full\ encTfChipPkENCFF739XTO K562 JUNB narrowPeak Transcription Factor ChIP-seq Peaks of JUNB in K562 from ENCODE 3 (ENCFF739XTO) 0 599 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUNB in K562 from ENCODE 3 (ENCFF739XTO)\ parent encTfChipPk off\ shortLabel K562 JUNB\ subGroups cellType=K562 factor=JUNB\ track encTfChipPkENCFF739XTO\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_fwd Mcf7ToEgf1_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward 0 599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_fwd Mcf7ToEgf1_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward 1 599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ ENCFF960KLD ENCFF960KLD bigWig Left ventricle myocardium inferior, male adult (60 years): (4) H3K27ac, ENCFF960KLD 2 600 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF960KLD.bw\ color 255,205,0\ longLabel Left ventricle myocardium inferior, male adult (60 years): (4) H3K27ac, ENCFF960KLD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 62.3\ shortLabel ENCFF960KLD\ subGroups organ=heart view=H3K27ac_view simpleBiosample=left_ventricle_myocardium_inferior-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeH3k27ac\ track ENCFF960KLD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF363FKA ENCSR000BUJ Peak bigBed 5 MCF-7 FOXM1 peaks 4 600 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/031a6b33-4f65-4fa8-a7e0-35f601151f9f/ENCFF363FKA.bigBed\ labelFields none\ longLabel MCF-7 FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF363FKA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF748IRR ENCSR000EOI Signal bigWig Fibroblast of peridontal ligament male DNase signal 2 600 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/d388e782-d321-4af6-ad0f-399c09ec729a/ENCFF748IRR.bigWig\ color 6,218,147\ longLabel Fibroblast of peridontal ligament male DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOI Signal\ track wgEncodeReg4Epigenetics_ENCFF748IRR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF385YRD ENCSR532LJV - strand bigWig Thyroid gland tissue male adult (37 years) - strand total RNA-seq signal 2 600 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/01/4d4e4a42-8cfa-446d-8189-038526afd160/ENCFF385YRD.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR532LJV - strand\ track wgEncodeReg4RnaSeq_ENCFF385YRD\ type bigWig\ visibility full\ encTfChipPkENCFF213EYD K562 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in K562 from ENCODE 3 (ENCFF213EYD) 0 600 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of JUND in K562 from ENCODE 3 (ENCFF213EYD)\ parent encTfChipPk off\ shortLabel K562 JUND\ subGroups cellType=K562 factor=JUND\ track encTfChipPkENCFF213EYD\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_rev Mcf7ToEgf1_00hr45minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse 0 600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_rev Mcf7ToEgf1_00hr45minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse 1 600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep2.CNhs12478.13100-140D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep2_CNhs12478_13100-140D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13100-140D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep2_CNhs12478_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13100-140D4\ urlLabel FANTOM5 Details:\ ENCFF320IPT ENCFF320IPT bigWig Heart left ventricle, female adult (53 years): (4) H3K27ac, ENCFF320IPT 2 601 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF320IPT.bw\ color 255,205,0\ longLabel Heart left ventricle, female adult (53 years): (4) H3K27ac, ENCFF320IPT\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 41.3\ shortLabel ENCFF320IPT\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_left_ventricle-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF320IPT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF230WOU ENCSR000BUJ Signal bigWig MCF-7 FOXM1 ENCSR000BUJ signal 2 601 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/46158770-4360-4a7f-bb90-9c0efb1d1642/ENCFF230WOU.bigWig\ color 65,171,173\ longLabel MCF-7 FOXM1 ENCSR000BUJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUJ Signal\ track wgEncodeReg4TfChip_ENCFF230WOU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF484SUR ENCSR000EOJ Peak bigBed 5 Fibroblast of lung DNase peak 4 601 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/7c5b0642-61b2-41e6-aa5a-12759f5c6ccc/ENCFF484SUR.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of lung DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOJ Peak\ track wgEncodeReg4Epigenetics_ENCFF484SUR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF646ZZQ ENCSR533TOW + strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 601 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/0a98c268-0756-44a5-bcc8-7a14a47452aa/ENCFF646ZZQ.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR533TOW + strand\ track wgEncodeReg4RnaSeq_ENCFF646ZZQ\ type bigWig\ visibility full\ encTfChipPkENCFF556XQQ K562 KAT2B narrowPeak Transcription Factor ChIP-seq Peaks of KAT2B in K562 from ENCODE 3 (ENCFF556XQQ) 0 601 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KAT2B in K562 from ENCODE 3 (ENCFF556XQQ)\ parent encTfChipPk off\ shortLabel K562 KAT2B\ subGroups cellType=K562 factor=KAT2B\ track encTfChipPkENCFF556XQQ\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_fwd Mcf7ToEgf1_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward 0 601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_fwd Mcf7ToEgf1_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward 1 601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ ENCFF337EUB ENCFF337EUB bigWig Right atrium auricular region, female adult (53 years): (4) H3K27ac, ENCFF337EUB 2 602 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF337EUB.bw\ color 255,205,0\ longLabel Right atrium auricular region, female adult (53 years): (4) H3K27ac, ENCFF337EUB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 134.3\ shortLabel ENCFF337EUB\ subGroups organ=heart view=H3K27ac_view simpleBiosample=right_atrium_auricular_region-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF337EUB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF735CHO ENCSR000BUK Peak bigBed 5 MCF-7 GABPA peaks 4 602 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/b407f81d-93e4-460d-b9b8-40378c2bda43/ENCFF735CHO.bigBed\ labelFields none\ longLabel MCF-7 GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF735CHO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF640TAP ENCSR000EOJ Signal bigWig Fibroblast of lung DNase signal 2 602 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/ce78b114-a6c2-4fb4-b8f7-c1d4318f4847/ENCFF640TAP.bigWig\ color 6,218,147\ longLabel Fibroblast of lung DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOJ Signal\ track wgEncodeReg4Epigenetics_ENCFF640TAP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF665OOW ENCSR533TOW - strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 602 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/f5ca1788-14b2-469e-9e66-1a6e2e5c62b5/ENCFF665OOW.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR533TOW - strand\ track wgEncodeReg4RnaSeq_ENCFF665OOW\ type bigWig\ visibility full\ encTfChipPkENCFF207ZEK K562 KAT8 narrowPeak Transcription Factor ChIP-seq Peaks of KAT8 in K562 from ENCODE 3 (ENCFF207ZEK) 0 602 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KAT8 in K562 from ENCODE 3 (ENCFF207ZEK)\ parent encTfChipPk off\ shortLabel K562 KAT8\ subGroups cellType=K562 factor=KAT8\ track encTfChipPkENCFF207ZEK\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_rev Mcf7ToEgf1_00hr45minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse 0 602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_rev Mcf7ToEgf1_00hr45minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse 1 602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr45min%2c%20biol_rep3.CNhs12739.13166-141B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr45min, biol_rep3_CNhs12739_13166-141B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13166-141B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr45minBiolRep3_CNhs12739_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13166-141B7\ urlLabel FANTOM5 Details:\ ENCFF345XIS ENCFF345XIS bigWig Heart right ventricle, male adult (61 years): (4) H3K27ac, ENCFF345XIS 2 603 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF345XIS.bw\ color 255,205,0\ longLabel Heart right ventricle, male adult (61 years): (4) H3K27ac, ENCFF345XIS\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 49.3\ shortLabel ENCFF345XIS\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_right_ventricle-_male_adult__61_years_ biosampleType=tissue donor=ENCDO808ASZ dataType=typeH3k27ac\ track ENCFF345XIS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF676BAJ ENCSR000BUK Signal bigWig MCF-7 GABPA ENCSR000BUK signal 2 603 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/c9b1df6f-69ea-41ed-914c-0ccb5e55d7c7/ENCFF676BAJ.bigWig\ color 65,171,173\ longLabel MCF-7 GABPA ENCSR000BUK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUK Signal\ track wgEncodeReg4TfChip_ENCFF676BAJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477PRH ENCSR000EOK Peak bigBed 5 Renal cortical epithelial cell DNase peak 4 603 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/13b4e8c5-9902-4726-b1fe-08bb3374c1eb/ENCFF477PRH.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal cortical epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOK Peak\ track wgEncodeReg4Epigenetics_ENCFF477PRH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF707VPL ENCSR534OAS + strand bigWig Right lobe of liver tissue male adult (45 years) + strand total RNA-seq signal 2 603 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/be0aaeb4-65e4-49d8-a920-cd7d9aac5512/ENCFF707VPL.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue male adult (45 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR534OAS + strand\ track wgEncodeReg4RnaSeq_ENCFF707VPL\ type bigWig\ visibility full\ encTfChipPkENCFF796VMI K562 KDM1A 1 narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF796VMI) 0 603 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF796VMI)\ parent encTfChipPk off\ shortLabel K562 KDM1A 1\ subGroups cellType=K562 factor=KDM1A\ track encTfChipPkENCFF796VMI\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_fwd Mcf7ToEgf1_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward 0 603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_fwd Mcf7ToEgf1_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward 1 603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ ENCFF135RBK ENCFF135RBK bigWig Heart left ventricle, female adult (59 years): (4) H3K27ac, ENCFF135RBK 2 604 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF135RBK.bw\ color 255,205,0\ longLabel Heart left ventricle, female adult (59 years): (4) H3K27ac, ENCFF135RBK\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 43.3\ shortLabel ENCFF135RBK\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_left_ventricle-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k27ac\ track ENCFF135RBK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF169IXS ENCSR000BUL Peak bigBed 5 MCF-7 MAX peaks 4 604 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7ea0a059-285c-44f7-bf17-639b4f9d79c8/ENCFF169IXS.bigBed\ labelFields none\ longLabel MCF-7 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF169IXS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF874JLE ENCSR000EOK Signal bigWig Renal cortical epithelial cell DNase signal 2 604 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/b3bb50da-673f-4652-93f6-bcb90906073b/ENCFF874JLE.bigWig\ color 6,218,147\ longLabel Renal cortical epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOK Signal\ track wgEncodeReg4Epigenetics_ENCFF874JLE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF152MZM ENCSR534OAS - strand bigWig Right lobe of liver tissue male adult (45 years) - strand total RNA-seq signal 2 604 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/2c502723-53bd-4969-9122-eb519fb62508/ENCFF152MZM.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue male adult (45 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR534OAS - strand\ track wgEncodeReg4RnaSeq_ENCFF152MZM\ type bigWig\ visibility full\ encTfChipPkENCFF483BRD K562 KDM1A 2 narrowPeak Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF483BRD) 0 604 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM1A in K562 from ENCODE 3 (ENCFF483BRD)\ parent encTfChipPk off\ shortLabel K562 KDM1A 2\ subGroups cellType=K562 factor=KDM1A\ track encTfChipPkENCFF483BRD\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_rev Mcf7ToEgf1_01hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse 0 604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_rev Mcf7ToEgf1_01hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse 1 604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep1.CNhs12423.13035-139F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep1_CNhs12423_13035-139F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13035-139F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep1_CNhs12423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13035-139F2\ urlLabel FANTOM5 Details:\ ENCFF509VVM ENCFF509VVM bigWig Heart right ventricle, female adult (56 years): (4) H3K27ac, ENCFF509VVM 2 605 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF509VVM.bw\ color 255,205,0\ longLabel Heart right ventricle, female adult (56 years): (4) H3K27ac, ENCFF509VVM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 46.3\ shortLabel ENCFF509VVM\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_right_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeH3k27ac\ track ENCFF509VVM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF352OFF ENCSR000BUL Signal bigWig MCF-7 MAX ENCSR000BUL signal 2 605 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/febaa3d6-d49b-49aa-a881-41609d4ebc50/ENCFF352OFF.bigWig\ color 65,171,173\ longLabel MCF-7 MAX ENCSR000BUL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUL Signal\ track wgEncodeReg4TfChip_ENCFF352OFF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF550STW ENCSR000EOL Peak bigBed 5 Kidney epithelial cell DNase peak 4 605 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/59ba41a3-41fd-4845-b8b2-37083782429c/ENCFF550STW.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOL Peak\ track wgEncodeReg4Epigenetics_ENCFF550STW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF667TTV ENCSR535VTR + strand bigWig HT1080 + strand total RNA-seq signal 2 605 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/02/59aa74bd-c412-42e2-96e3-a0c7794076b6/ENCFF667TTV.bigWig\ color 138,135,169\ longLabel HT1080 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR535VTR + strand\ track wgEncodeReg4RnaSeq_ENCFF667TTV\ type bigWig\ visibility full\ encTfChipPkENCFF470RHZ K562 KDM4B 1 narrowPeak Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF470RHZ) 0 605 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF470RHZ)\ parent encTfChipPk off\ shortLabel K562 KDM4B 1\ subGroups cellType=K562 factor=KDM4B\ track encTfChipPkENCFF470RHZ\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_fwd Mcf7ToEgf1_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward 0 605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_fwd Mcf7ToEgf1_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward 1 605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ ENCFF707MHB ENCFF707MHB bigWig Heart left ventricle, female adult (56 years): (4) H3K27ac, ENCFF707MHB 2 606 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF707MHB.bw\ color 255,205,0\ longLabel Heart left ventricle, female adult (56 years): (4) H3K27ac, ENCFF707MHB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 42.3\ shortLabel ENCFF707MHB\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_left_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeH3k27ac\ track ENCFF707MHB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF521RDC ENCSR000BUM Peak bigBed 5 MCF-7 SIN3A peaks 4 606 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/b6906995-6d45-4608-a391-c5842e2862bc/ENCFF521RDC.bigBed\ labelFields none\ longLabel MCF-7 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF521RDC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF236NPL ENCSR000EOL Signal bigWig Kidney epithelial cell DNase signal 2 606 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/f6ad5fb0-fad4-4d16-a289-3d38c720d6f2/ENCFF236NPL.bigWig\ color 6,218,147\ longLabel Kidney epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOL Signal\ track wgEncodeReg4Epigenetics_ENCFF236NPL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF278CTO ENCSR535VTR - strand bigWig HT1080 - strand total RNA-seq signal 2 606 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/02/807a798f-b7da-486e-80c3-c592fcad41be/ENCFF278CTO.bigWig\ color 138,135,169\ longLabel HT1080 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR535VTR - strand\ track wgEncodeReg4RnaSeq_ENCFF278CTO\ type bigWig\ visibility full\ encTfChipPkENCFF955AOD K562 KDM4B 2 narrowPeak Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF955AOD) 0 606 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM4B in K562 from ENCODE 3 (ENCFF955AOD)\ parent encTfChipPk off\ shortLabel K562 KDM4B 2\ subGroups cellType=K562 factor=KDM4B\ track encTfChipPkENCFF955AOD\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_rev Mcf7ToEgf1_01hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse 0 606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_rev Mcf7ToEgf1_01hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse 1 606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep2.CNhs12479.13101-140D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep2_CNhs12479_13101-140D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13101-140D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep2_CNhs12479_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13101-140D5\ urlLabel FANTOM5 Details:\ ENCFF400FAA ENCFF400FAA bigWig Heart right ventricle, male adult (66 years): (4) H3K27ac, ENCFF400FAA 2 607 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF400FAA.bw\ color 255,205,0\ longLabel Heart right ventricle, male adult (66 years): (4) H3K27ac, ENCFF400FAA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 50.3\ shortLabel ENCFF400FAA\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_right_ventricle-_male_adult__66_years_ biosampleType=tissue donor=ENCDO926KEV dataType=typeH3k27ac\ track ENCFF400FAA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF736LEG ENCSR000BUM Signal bigWig MCF-7 SIN3A ENCSR000BUM signal 2 607 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/b0e1a5e6-96ea-4e92-ae5b-de980c7d0a7f/ENCFF736LEG.bigWig\ color 65,171,173\ longLabel MCF-7 SIN3A ENCSR000BUM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUM Signal\ track wgEncodeReg4TfChip_ENCFF736LEG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF084QBI ENCSR000EOM Peak bigBed 5 Glomerular endothelial cell DNase peak 4 607 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/9e9c18d3-6970-4eef-9db0-64639c58b2b2/ENCFF084QBI.bigBed\ color 6,218,147\ labelFields none\ longLabel Glomerular endothelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOM Peak\ track wgEncodeReg4Epigenetics_ENCFF084QBI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF982JPV ENCSR538FRP + strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 607 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/c56a92c4-626a-4a8a-ba89-be46e73ac91c/ENCFF982JPV.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR538FRP + strand\ track wgEncodeReg4RnaSeq_ENCFF982JPV\ type bigWig\ visibility full\ encTfChipPkENCFF668XLN K562 KDM5B narrowPeak Transcription Factor ChIP-seq Peaks of KDM5B in K562 from ENCODE 3 (ENCFF668XLN) 0 607 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KDM5B in K562 from ENCODE 3 (ENCFF668XLN)\ parent encTfChipPk off\ shortLabel K562 KDM5B\ subGroups cellType=K562 factor=KDM5B\ track encTfChipPkENCFF668XLN\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_fwd Mcf7ToEgf1_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward 0 607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_fwd Mcf7ToEgf1_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward 1 607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ ENCFF617TKL ENCFF617TKL bigWig Heart left ventricle, male adult (43 years): (4) H3K27ac, ENCFF617TKL 2 608 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF617TKL.bw\ color 255,205,0\ longLabel Heart left ventricle, male adult (43 years): (4) H3K27ac, ENCFF617TKL\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 44.3\ shortLabel ENCFF617TKL\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_left_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeH3k27ac\ track ENCFF617TKL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF329MRX ENCSR000BUN Peak bigBed 5 MCF-7 TCF12 peaks 4 608 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7aa1f5e6-80db-4053-8003-f714d58920d9/ENCFF329MRX.bigBed\ labelFields none\ longLabel MCF-7 TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF329MRX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF529OOQ ENCSR000EOM Signal bigWig Glomerular endothelial cell DNase signal 2 608 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/7dfbd83c-23d2-46d7-93ba-047084c5543c/ENCFF529OOQ.bigWig\ color 6,218,147\ longLabel Glomerular endothelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOM Signal\ track wgEncodeReg4Epigenetics_ENCFF529OOQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF025LRR ENCSR538FRP - strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 608 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/7d6d3074-7658-466d-99bc-6d9e911e16d2/ENCFF025LRR.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR538FRP - strand\ track wgEncodeReg4RnaSeq_ENCFF025LRR\ type bigWig\ visibility full\ encTfChipPkENCFF379LKE K562 KLF16 narrowPeak Transcription Factor ChIP-seq Peaks of KLF16 in K562 from ENCODE 3 (ENCFF379LKE) 0 608 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of KLF16 in K562 from ENCODE 3 (ENCFF379LKE)\ parent encTfChipPk off\ shortLabel K562 KLF16\ subGroups cellType=K562 factor=KLF16\ track encTfChipPkENCFF379LKE\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_rev Mcf7ToEgf1_01hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse 0 608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_rev Mcf7ToEgf1_01hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse 1 608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr00min%2c%20biol_rep3.CNhs12705.13167-141B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr00min, biol_rep3_CNhs12705_13167-141B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13167-141B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr00minBiolRep3_CNhs12705_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13167-141B8\ urlLabel FANTOM5 Details:\ ENCFF982IVZ ENCFF982IVZ bigWig Heart right ventricle, male adult (43 years): (4) H3K27ac, ENCFF982IVZ 2 609 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF982IVZ.bw\ color 255,205,0\ longLabel Heart right ventricle, male adult (43 years): (4) H3K27ac, ENCFF982IVZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 48.3\ shortLabel ENCFF982IVZ\ subGroups organ=heart view=H3K27ac_view simpleBiosample=heart_right_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeH3k27ac\ track ENCFF982IVZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF302JJZ ENCSR000BUN Signal bigWig MCF-7 TCF12 ENCSR000BUN signal 2 609 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/52a0f1a5-2b5f-4ba1-8041-b107c8556e84/ENCFF302JJZ.bigWig\ color 65,171,173\ longLabel MCF-7 TCF12 ENCSR000BUN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUN Signal\ track wgEncodeReg4TfChip_ENCFF302JJZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF908XKP ENCSR000EON Peak bigBed 5 Retinal pigment epithelial cell DNase peak 4 609 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/b7b67b7f-0cc8-471c-9fe7-ae70f52354bf/ENCFF908XKP.bigBed\ color 6,218,147\ labelFields none\ longLabel Retinal pigment epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EON Peak\ track wgEncodeReg4Epigenetics_ENCFF908XKP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF654QFS ENCSR539OQU + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 609 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/23146345-6c40-4b3b-8d80-0fd818190791/ENCFF654QFS.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR539OQU + strand\ track wgEncodeReg4RnaSeq_ENCFF654QFS\ type bigWig\ visibility full\ encTfChipPkENCFF423LPW K562 L3MBTL2 narrowPeak Transcription Factor ChIP-seq Peaks of L3MBTL2 in K562 from ENCODE 3 (ENCFF423LPW) 0 609 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of L3MBTL2 in K562 from ENCODE 3 (ENCFF423LPW)\ parent encTfChipPk off\ shortLabel K562 L3MBTL2\ subGroups cellType=K562 factor=L3MBTL2\ track encTfChipPkENCFF423LPW\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_fwd Mcf7ToEgf1_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward 0 609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_fwd Mcf7ToEgf1_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward 1 609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ ENCFF787LMI ENCFF787LMI bigWig HCT116: (4) H3K27ac, ENCFF787LMI 2 610 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF787LMI.bw\ color 255,205,0\ longLabel HCT116: (4) H3K27ac, ENCFF787LMI\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 39.3\ shortLabel ENCFF787LMI\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=HCT116 biosampleType=cell_line donor=ENCDO000ABE dataType=typeH3k27ac\ track ENCFF787LMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF710WPA ENCSR000BUO Peak bigBed 5 MCF-7 TEAD4 peaks 4 610 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/2a712200-8490-4394-872c-0e03de3528bc/ENCFF710WPA.bigBed\ labelFields none\ longLabel MCF-7 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF710WPA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF972BYK ENCSR000EON Signal bigWig Retinal pigment epithelial cell DNase signal 2 610 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/7ae2c312-3c8d-4690-bf05-1c12b4588d42/ENCFF972BYK.bigWig\ color 6,218,147\ longLabel Retinal pigment epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EON Signal\ track wgEncodeReg4Epigenetics_ENCFF972BYK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF685WZJ ENCSR539OQU - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 610 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/e80de820-def1-492c-8229-2be0548878bd/ENCFF685WZJ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR539OQU - strand\ track wgEncodeReg4RnaSeq_ENCFF685WZJ\ type bigWig\ visibility full\ encTfChipPkENCFF134HQP K562 LEF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF134HQP) 0 610 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF134HQP)\ parent encTfChipPk off\ shortLabel K562 LEF1 1\ subGroups cellType=K562 factor=LEF1\ track encTfChipPkENCFF134HQP\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_rev Mcf7ToEgf1_01hr20minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse 0 610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_rev Mcf7ToEgf1_01hr20minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse 1 610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep1.CNhs12424.13036-139F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep1_CNhs12424_13036-139F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13036-139F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep1_CNhs12424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13036-139F3\ urlLabel FANTOM5 Details:\ ENCFF619JXN ENCFF619JXN bigWig Caco-2: (4) H3K27ac, ENCFF619JXN 2 611 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF619JXN.bw\ color 255,205,0\ longLabel Caco-2: (4) H3K27ac, ENCFF619JXN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 18.3\ shortLabel ENCFF619JXN\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=Caco-2 biosampleType=cell_line donor=ENCDO000ACR dataType=typeH3k27ac\ track ENCFF619JXN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF642LVK ENCSR000BUO Signal bigWig MCF-7 TEAD4 ENCSR000BUO signal 2 611 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/b48ddc46-62ad-47a2-a99a-68abb8025d14/ENCFF642LVK.bigWig\ color 65,171,173\ longLabel MCF-7 TEAD4 ENCSR000BUO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUO Signal\ track wgEncodeReg4TfChip_ENCFF642LVK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF278OKC ENCSR000EOO Peak bigBed 5 Skeletal muscle myoblast DNase peak 4 611 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/2746362a-9299-47ae-8432-f1a195accc4e/ENCFF278OKC.bigBed\ color 6,218,147\ labelFields none\ longLabel Skeletal muscle myoblast DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOO Peak\ track wgEncodeReg4Epigenetics_ENCFF278OKC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF684FER ENCSR544SAU + strand bigWig Peyer's patch tissue female adult (53 years) + strand total RNA-seq signal 2 611 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/22332be7-5084-4ad4-9416-605c5b3a0939/ENCFF684FER.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR544SAU + strand\ track wgEncodeReg4RnaSeq_ENCFF684FER\ type bigWig\ visibility full\ encTfChipPkENCFF697VRJ K562 LEF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF697VRJ) 0 611 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of LEF1 in K562 from ENCODE 3 (ENCFF697VRJ)\ parent encTfChipPk off\ shortLabel K562 LEF1 2\ subGroups cellType=K562 factor=LEF1\ track encTfChipPkENCFF697VRJ\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_fwd Mcf7ToEgf1_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward 0 611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_fwd Mcf7ToEgf1_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward 1 611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ ENCFF741NZM ENCFF741NZM bigWig Transverse colon, female adult (51 years): (4) H3K27ac, ENCFF741NZM 2 612 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF741NZM.bw\ color 255,205,0\ longLabel Transverse colon, female adult (51 years): (4) H3K27ac, ENCFF741NZM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 158.3\ shortLabel ENCFF741NZM\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=transverse_colon-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF741NZM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF518EEQ ENCSR000BUP Peak bigBed 5 Panc1 REST peaks 4 612 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/cc6ab73d-dfac-4bc2-9c71-23787d644de3/ENCFF518EEQ.bigBed\ labelFields none\ longLabel Panc1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF518EEQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF149ERN ENCSR000EOO Signal bigWig Skeletal muscle myoblast DNase signal 2 612 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/0c66246f-4f5d-4a15-bab5-8571a6da4cb4/ENCFF149ERN.bigWig\ color 6,218,147\ longLabel Skeletal muscle myoblast DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOO Signal\ track wgEncodeReg4Epigenetics_ENCFF149ERN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF117NCC ENCSR544SAU - strand bigWig Peyer's patch tissue female adult (53 years) - strand total RNA-seq signal 2 612 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f2940e5d-7340-40d3-b46a-27f85da03b4a/ENCFF117NCC.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR544SAU - strand\ track wgEncodeReg4RnaSeq_ENCFF117NCC\ type bigWig\ visibility full\ encTfChipPkENCFF498MGH K562 MAFF narrowPeak Transcription Factor ChIP-seq Peaks of MAFF in K562 from ENCODE 3 (ENCFF498MGH) 0 612 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAFF in K562 from ENCODE 3 (ENCFF498MGH)\ parent encTfChipPk off\ shortLabel K562 MAFF\ subGroups cellType=K562 factor=MAFF\ track encTfChipPkENCFF498MGH\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_rev Mcf7ToEgf1_01hr20minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse 0 612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_rev Mcf7ToEgf1_01hr20minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse 1 612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep2.CNhs12480.13102-140D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep2_CNhs12480_13102-140D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13102-140D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep2_CNhs12480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13102-140D6\ urlLabel FANTOM5 Details:\ ENCFF322NLT ENCFF322NLT bigWig Sigmoid colon, male adult (54 years): (4) H3K27ac, ENCFF322NLT 2 613 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF322NLT.bw\ color 255,205,0\ longLabel Sigmoid colon, male adult (54 years): (4) H3K27ac, ENCFF322NLT\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 137.3\ shortLabel ENCFF322NLT\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=sigmoid_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF322NLT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF055VSN ENCSR000BUP Signal bigWig Panc1 REST ENCSR000BUP signal 2 613 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/00b400d7-a9e5-4ea1-a644-4de24433b8a9/ENCFF055VSN.bigWig\ color 175,100,41\ longLabel Panc1 REST ENCSR000BUP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUP Signal\ track wgEncodeReg4TfChip_ENCFF055VSN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF532QMO ENCSR000EOP Peak bigBed 5 Myotube originated from skeletal muscle myoblast DNase peak 4 613 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/bf6de824-741b-4ed4-a621-5524b6103960/ENCFF532QMO.bigBed\ color 6,218,147\ labelFields none\ longLabel Myotube originated from skeletal muscle myoblast DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOP Peak\ track wgEncodeReg4Epigenetics_ENCFF532QMO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF410QZX ENCSR551NII + strand bigWig Lower leg skin tissue female adult (51 years) + strand total RNA-seq signal 2 613 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/2441fc88-fd57-4d49-8ed7-f8f2e5b93a88/ENCFF410QZX.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR551NII + strand\ track wgEncodeReg4RnaSeq_ENCFF410QZX\ type bigWig\ visibility full\ encTfChipPkENCFF893SCL K562 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in K562 from ENCODE 3 (ENCFF893SCL) 0 613 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in K562 from ENCODE 3 (ENCFF893SCL)\ parent encTfChipPk off\ shortLabel K562 MAFK\ subGroups cellType=K562 factor=MAFK\ track encTfChipPkENCFF893SCL\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_fwd Mcf7ToEgf1_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward 0 613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_fwd Mcf7ToEgf1_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward 1 613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ ENCFF427MZX ENCFF427MZX bigWig Transverse colon, male adult (54 years): (4) H3K27ac, ENCFF427MZX 2 614 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF427MZX.bw\ color 255,205,0\ longLabel Transverse colon, male adult (54 years): (4) H3K27ac, ENCFF427MZX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 161.3\ shortLabel ENCFF427MZX\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=transverse_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF427MZX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF754TJT ENCSR000BUQ Peak bigBed 5 SK-N-SH TEAD4 peaks 4 614 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/ded70ccb-3868-44f1-8cc1-1f729edee265/ENCFF754TJT.bigBed\ labelFields none\ longLabel SK-N-SH TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF754TJT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF594BSS ENCSR000EOP Signal bigWig Myotube originated from skeletal muscle myoblast DNase signal 2 614 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/4ebcf263-6a20-4790-81b0-5ddc123f1b9a/ENCFF594BSS.bigWig\ color 6,218,147\ longLabel Myotube originated from skeletal muscle myoblast DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOP Signal\ track wgEncodeReg4Epigenetics_ENCFF594BSS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF564GZH ENCSR551NII - strand bigWig Lower leg skin tissue female adult (51 years) - strand total RNA-seq signal 2 614 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bcd34f31-e1f6-4339-9be1-a083fd0f2f02/ENCFF564GZH.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR551NII - strand\ track wgEncodeReg4RnaSeq_ENCFF564GZH\ type bigWig\ visibility full\ encTfChipPkENCFF618VMC K562 MAX 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF618VMC) 0 614 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF618VMC)\ parent encTfChipPk off\ shortLabel K562 MAX 1\ subGroups cellType=K562 factor=MAX\ track encTfChipPkENCFF618VMC\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_rev Mcf7ToEgf1_01hr20minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse 0 614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_rev Mcf7ToEgf1_01hr20minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse 1 614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr20min%2c%20biol_rep3.CNhs12742.13168-141B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr20min, biol_rep3_CNhs12742_13168-141B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13168-141B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr20minBiolRep3_CNhs12742_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13168-141B9\ urlLabel FANTOM5 Details:\ ENCFF004SRJ ENCFF004SRJ bigWig Colonic mucosa, female adult (41 years): (4) H3K27ac, ENCFF004SRJ 2 615 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF004SRJ.bw\ color 255,205,0\ longLabel Colonic mucosa, female adult (41 years): (4) H3K27ac, ENCFF004SRJ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 22.3\ shortLabel ENCFF004SRJ\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=colonic_mucosa-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k27ac\ track ENCFF004SRJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF976MXJ ENCSR000BUQ Signal bigWig SK-N-SH TEAD4 ENCSR000BUQ signal 2 615 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/d78f5c45-4d4f-4450-b72d-241f122b63ec/ENCFF976MXJ.bigWig\ color 155,155,18\ longLabel SK-N-SH TEAD4 ENCSR000BUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUQ Signal\ track wgEncodeReg4TfChip_ENCFF976MXJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF399MCK ENCSR000EOR Peak bigBed 5 Fibroblast of villous mesenchyme DNase peak 4 615 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/7161111a-db61-4ff8-98b7-07af0ff0dee0/ENCFF399MCK.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of villous mesenchyme DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOR Peak\ track wgEncodeReg4Epigenetics_ENCFF399MCK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF707WTD ENCSR552RFJ + strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 615 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6f1eaf07-2068-4fc8-8d92-19e19df5d06d/ENCFF707WTD.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR552RFJ + strand\ track wgEncodeReg4RnaSeq_ENCFF707WTD\ type bigWig\ visibility full\ encTfChipPkENCFF900NVQ K562 MAX 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF900NVQ) 0 615 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MAX in K562 from ENCODE 3 (ENCFF900NVQ)\ parent encTfChipPk off\ shortLabel K562 MAX 2\ subGroups cellType=K562 factor=MAX\ track encTfChipPkENCFF900NVQ\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_fwd Mcf7ToEgf1_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward 0 615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_fwd Mcf7ToEgf1_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward 1 615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ ENCFF111DLN ENCFF111DLN bigWig Sigmoid colon, female adult (53 years): (4) H3K27ac, ENCFF111DLN 2 616 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF111DLN.bw\ color 255,205,0\ longLabel Sigmoid colon, female adult (53 years): (4) H3K27ac, ENCFF111DLN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 136.3\ shortLabel ENCFF111DLN\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=sigmoid_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF111DLN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF197ISF ENCSR000BUR Peak bigBed 5 Ishikawa CREB1 peaks 4 616 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ce5a4048-f032-4924-a87f-8a798c4b6783/ENCFF197ISF.bigBed\ labelFields none\ longLabel Ishikawa CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF197ISF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF168WLU ENCSR000EOR Signal bigWig Fibroblast of villous mesenchyme DNase signal 2 616 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/ed8d62c5-3f86-4412-86c8-67be048845e2/ENCFF168WLU.bigWig\ color 6,218,147\ longLabel Fibroblast of villous mesenchyme DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOR Signal\ track wgEncodeReg4Epigenetics_ENCFF168WLU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF989KZH ENCSR552RFJ - strand bigWig Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 616 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/bb18e4b2-3777-4872-a806-2a03e1589076/ENCFF989KZH.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR552RFJ - strand\ track wgEncodeReg4RnaSeq_ENCFF989KZH\ type bigWig\ visibility full\ encTfChipPkENCFF617QSK K562 MBD2 narrowPeak Transcription Factor ChIP-seq Peaks of MBD2 in K562 from ENCODE 3 (ENCFF617QSK) 0 616 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MBD2 in K562 from ENCODE 3 (ENCFF617QSK)\ parent encTfChipPk off\ shortLabel K562 MBD2\ subGroups cellType=K562 factor=MBD2\ track encTfChipPkENCFF617QSK\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_rev Mcf7ToEgf1_01hr40minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse 0 616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_rev Mcf7ToEgf1_01hr40minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse 1 616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep1.CNhs12425.13037-139F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep1_CNhs12425_13037-139F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13037-139F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep1_CNhs12425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13037-139F4\ urlLabel FANTOM5 Details:\ ENCFF318ECM ENCFF318ECM bigWig Transverse colon, female adult (53 years): (4) H3K27ac, ENCFF318ECM 2 617 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF318ECM.bw\ color 255,205,0\ longLabel Transverse colon, female adult (53 years): (4) H3K27ac, ENCFF318ECM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 159.3\ shortLabel ENCFF318ECM\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=transverse_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF318ECM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF185BAH ENCSR000BUR Signal bigWig Ishikawa CREB1 ENCSR000BUR signal 2 617 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a546c1d2-bb2e-4b43-b53b-8bf68ecad491/ENCFF185BAH.bigWig\ color 186,111,165\ longLabel Ishikawa CREB1 ENCSR000BUR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUR Signal\ track wgEncodeReg4TfChip_ENCFF185BAH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF511HWR ENCSR000EOS Peak bigBed 5 Jurkat, Clone E6-1 DNase peak 4 617 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/095ba564-42f6-48bc-a5a4-0a9dc14ac496/ENCFF511HWR.bigBed\ color 6,218,147\ labelFields none\ longLabel Jurkat, Clone E6-1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOS Peak\ track wgEncodeReg4Epigenetics_ENCFF511HWR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF274TDF ENCSR558SEE + strand bigWig A673 + strand total RNA-seq signal 2 617 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/9eda8f34-af76-4656-bd92-f55157f02759/ENCFF274TDF.bigWig\ color 137,135,170\ longLabel A673 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR558SEE + strand\ track wgEncodeReg4RnaSeq_ENCFF274TDF\ type bigWig\ visibility full\ encTfChipPkENCFF043HHG K562 MCM2 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF043HHG) 0 617 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF043HHG)\ parent encTfChipPk off\ shortLabel K562 MCM2 1\ subGroups cellType=K562 factor=MCM2\ track encTfChipPkENCFF043HHG\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_fwd Mcf7ToEgf1_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward 0 617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_fwd Mcf7ToEgf1_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward 1 617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ ENCFF532ZGB ENCFF532ZGB bigWig Transverse colon, male adult (37 years): (4) H3K27ac, ENCFF532ZGB 2 618 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF532ZGB.bw\ color 255,205,0\ longLabel Transverse colon, male adult (37 years): (4) H3K27ac, ENCFF532ZGB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 160.3\ shortLabel ENCFF532ZGB\ subGroups organ=large_intestine view=H3K27ac_view simpleBiosample=transverse_colon-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF532ZGB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF578VDD ENCSR000BUS Peak bigBed 5 Ishikawa FOXM1 peaks 4 618 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/0d1c727c-a628-4bb7-8a55-a9c612cf39d2/ENCFF578VDD.bigBed\ labelFields none\ longLabel Ishikawa FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF578VDD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF794WMH ENCSR000EOS Signal bigWig Jurkat, Clone E6-1 DNase signal 2 618 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/143c0b3d-c7dd-4d1b-a4b6-e37f91d2bcd2/ENCFF794WMH.bigWig\ color 6,218,147\ longLabel Jurkat, Clone E6-1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOS Signal\ track wgEncodeReg4Epigenetics_ENCFF794WMH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF966ZPC ENCSR558SEE - strand bigWig A673 - strand total RNA-seq signal 2 618 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/a50fe819-2281-45d4-8925-e59c35c58e31/ENCFF966ZPC.bigWig\ color 137,135,170\ longLabel A673 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR558SEE - strand\ track wgEncodeReg4RnaSeq_ENCFF966ZPC\ type bigWig\ visibility full\ encTfChipPkENCFF571REC K562 MCM2 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF571REC) 0 618 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM2 in K562 from ENCODE 3 (ENCFF571REC)\ parent encTfChipPk off\ shortLabel K562 MCM2 2\ subGroups cellType=K562 factor=MCM2\ track encTfChipPkENCFF571REC\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_rev Mcf7ToEgf1_01hr40minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse 0 618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_rev Mcf7ToEgf1_01hr40minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse 1 618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep2.CNhs12482.13103-140D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep2_CNhs12482_13103-140D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13103-140D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep2_CNhs12482_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13103-140D7\ urlLabel FANTOM5 Details:\ ENCFF795ONN ENCFF795ONN bigWig HepG2: (4) H3K27ac, ENCFF795ONN 2 619 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF795ONN.bw\ color 255,205,0\ longLabel HepG2: (4) H3K27ac, ENCFF795ONN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 54.3\ shortLabel ENCFF795ONN\ subGroups organ=liver view=H3K27ac_view simpleBiosample=HepG2 biosampleType=cell_line donor=ENCDO000AAC dataType=typeH3k27ac\ track ENCFF795ONN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF503FYP ENCSR000BUS Signal bigWig Ishikawa FOXM1 ENCSR000BUS signal 2 619 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1af7caea-f797-4286-84e9-1fbfc0eefd63/ENCFF503FYP.bigWig\ color 186,111,165\ longLabel Ishikawa FOXM1 ENCSR000BUS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUS Signal\ track wgEncodeReg4TfChip_ENCFF503FYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF327DFG ENCSR000EOT Peak bigBed 5 K562 DNase peak 4 619 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/0a02f295-c201-4022-b70d-f57e57883d92/ENCFF327DFG.bigBed\ color 6,218,147\ labelFields none\ longLabel K562 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOT Peak\ track wgEncodeReg4Epigenetics_ENCFF327DFG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF631SMY ENCSR559HWG + strand bigWig Endodermal cell originated from H1 + strand total RNA-seq signal 2 619 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/ed42d3e2-e3b8-42e1-b8b6-78b7def50144/ENCFF631SMY.bigWig\ color 118,158,101\ longLabel Endodermal cell originated from H1 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR559HWG + strand\ track wgEncodeReg4RnaSeq_ENCFF631SMY\ type bigWig\ visibility full\ encTfChipPkENCFF672PYP K562 MCM3 narrowPeak Transcription Factor ChIP-seq Peaks of MCM3 in K562 from ENCODE 3 (ENCFF672PYP) 0 619 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM3 in K562 from ENCODE 3 (ENCFF672PYP)\ parent encTfChipPk off\ shortLabel K562 MCM3\ subGroups cellType=K562 factor=MCM3\ track encTfChipPkENCFF672PYP\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_fwd Mcf7ToEgf1_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward 0 619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_fwd Mcf7ToEgf1_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward 1 619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ ENCFF347LDC ENCFF347LDC bigWig Hepatocyte, female embryo (5 days): (4) H3K27ac, ENCFF347LDC 2 620 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF347LDC.bw\ color 255,205,0\ longLabel Hepatocyte, female embryo (5 days): (4) H3K27ac, ENCFF347LDC\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 53.3\ shortLabel ENCFF347LDC\ subGroups organ=liver view=H3K27ac_view simpleBiosample=hepatocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF347LDC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF029AAD ENCSR000BUT Peak bigBed 5 Ishikawa NFIC peaks 4 620 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/a91e85ea-e57f-4d51-abe2-6578e91c4dd6/ENCFF029AAD.bigBed\ labelFields none\ longLabel Ishikawa NFIC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF029AAD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF414OGC ENCSR000EOT Signal bigWig K562 DNase signal 2 620 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/e5e1f67e-5af2-484a-b399-23bd39f2352d/ENCFF414OGC.bigWig\ color 6,218,147\ longLabel K562 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EOT Signal\ track wgEncodeReg4Epigenetics_ENCFF414OGC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF180OLA ENCSR559HWG - strand bigWig Endodermal cell originated from H1 - strand total RNA-seq signal 2 620 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/b0e979e8-570c-4465-937e-bdce93ff90cc/ENCFF180OLA.bigWig\ color 118,158,101\ longLabel Endodermal cell originated from H1 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR559HWG - strand\ track wgEncodeReg4RnaSeq_ENCFF180OLA\ type bigWig\ visibility full\ encTfChipPkENCFF603SXI K562 MCM5 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF603SXI) 0 620 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF603SXI)\ parent encTfChipPk off\ shortLabel K562 MCM5 1\ subGroups cellType=K562 factor=MCM5\ track encTfChipPkENCFF603SXI\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_rev Mcf7ToEgf1_01hr40minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse 0 620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_rev Mcf7ToEgf1_01hr40minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse 1 620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2001hr40min%2c%20biol_rep3.CNhs12743.13169-141C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 01hr40min, biol_rep3_CNhs12743_13169-141C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13169-141C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF101hr40minBiolRep3_CNhs12743_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13169-141C1\ urlLabel FANTOM5 Details:\ ENCFF764VSN ENCFF764VSN bigWig Right lobe of liver, female adult (53 years): (4) H3K27ac, ENCFF764VSN 2 621 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF764VSN.bw\ color 255,205,0\ longLabel Right lobe of liver, female adult (53 years): (4) H3K27ac, ENCFF764VSN\ maxHeightPixels 30\ parent H3K27ac_view on\ priority 135.3\ shortLabel ENCFF764VSN\ subGroups organ=liver view=H3K27ac_view simpleBiosample=right_lobe_of_liver-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF764VSN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF090FHE ENCSR000BUT Signal bigWig Ishikawa NFIC ENCSR000BUT signal 2 621 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/e6caa43e-526b-43fa-9696-b274cf92a554/ENCFF090FHE.bigWig\ color 186,111,165\ longLabel Ishikawa NFIC ENCSR000BUT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUT Signal\ track wgEncodeReg4TfChip_ENCFF090FHE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF468UGD ENCSR000EPD Peak bigBed 5 Myocyte originated from LHCN-M2 DNase peak 4 621 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/7cb2ae85-c05b-4545-a98e-17df0bd03df8/ENCFF468UGD.bigBed\ color 6,218,147\ labelFields none\ longLabel Myocyte originated from LHCN-M2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPD Peak\ track wgEncodeReg4Epigenetics_ENCFF468UGD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF104NDB ENCSR562BUN + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 621 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/e3397ed0-2a2f-44a2-bba3-24458f264d0f/ENCFF104NDB.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR562BUN + strand\ track wgEncodeReg4RnaSeq_ENCFF104NDB\ type bigWig\ visibility full\ encTfChipPkENCFF658SJY K562 MCM5 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF658SJY) 0 621 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM5 in K562 from ENCODE 3 (ENCFF658SJY)\ parent encTfChipPk off\ shortLabel K562 MCM5 2\ subGroups cellType=K562 factor=MCM5\ track encTfChipPkENCFF658SJY\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_fwd Mcf7ToEgf1_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward 0 621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_fwd Mcf7ToEgf1_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward 1 621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ ENCFF699OAR ENCFF699OAR bigWig IMR-90: (4) H3K27ac, ENCFF699OAR 2 622 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF699OAR.bw\ color 255,205,0\ longLabel IMR-90: (4) H3K27ac, ENCFF699OAR\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 57.3\ shortLabel ENCFF699OAR\ subGroups organ=lung view=H3K27ac_view simpleBiosample=IMR-90 biosampleType=cell_line donor=ENCDO000AAX dataType=typeH3k27ac\ track ENCFF699OAR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF456OHV ENCSR000BUU Peak bigBed 5 Ishikawa REST peaks 4 622 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/586b3279-f146-46b1-85e9-c549c37186b9/ENCFF456OHV.bigBed\ labelFields none\ longLabel Ishikawa REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF456OHV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF932RDX ENCSR000EPD Signal bigWig Myocyte originated from LHCN-M2 DNase signal 2 622 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/3d6518bd-f368-47e4-977e-60e468186621/ENCFF932RDX.bigWig\ color 6,218,147\ longLabel Myocyte originated from LHCN-M2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPD Signal\ track wgEncodeReg4Epigenetics_ENCFF932RDX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF739OVE ENCSR562BUN - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 622 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/7061250d-291a-43a4-9fd2-ce792418021b/ENCFF739OVE.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR562BUN - strand\ track wgEncodeReg4RnaSeq_ENCFF739OVE\ type bigWig\ visibility full\ encTfChipPkENCFF159MQI K562 MCM7 1 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF159MQI) 0 622 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF159MQI)\ parent encTfChipPk off\ shortLabel K562 MCM7 1\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF159MQI\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_rev Mcf7ToEgf1_02hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse 0 622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_rev Mcf7ToEgf1_02hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse 1 622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep1.CNhs12426.13038-139F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep1_CNhs12426_13038-139F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13038-139F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep1_CNhs12426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13038-139F5\ urlLabel FANTOM5 Details:\ ENCFF389RGR ENCFF389RGR bigWig AG04450: (4) H3K27ac, ENCFF389RGR 2 623 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF389RGR.bw\ color 255,205,0\ longLabel AG04450: (4) H3K27ac, ENCFF389RGR\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 7.3\ shortLabel ENCFF389RGR\ subGroups organ=lung view=H3K27ac_view simpleBiosample=AG04450 biosampleType=cell_line donor=ENCDO001AAA dataType=typeH3k27ac\ track ENCFF389RGR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF891YPV ENCSR000BUU Signal bigWig Ishikawa REST ENCSR000BUU signal 2 623 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/9690e4ba-aff8-4b7e-bf69-9409e30ef04e/ENCFF891YPV.bigWig\ color 186,111,165\ longLabel Ishikawa REST ENCSR000BUU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUU Signal\ track wgEncodeReg4TfChip_ENCFF891YPV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF052FBR ENCSR000EPE Peak bigBed 5 LHCN-M2 DNase peak 4 623 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/b959ec3a-4501-4c7d-9ff4-32da2c7164b2/ENCFF052FBR.bigBed\ color 6,218,147\ labelFields none\ longLabel LHCN-M2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPE Peak\ track wgEncodeReg4Epigenetics_ENCFF052FBR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF486EBM ENCSR562ORH + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 623 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/746ba899-9a21-414e-a8bf-ad1f91cb4829/ENCFF486EBM.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR562ORH + strand\ track wgEncodeReg4RnaSeq_ENCFF486EBM\ type bigWig\ visibility full\ encTfChipPkENCFF914ELA K562 MCM7 2 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF914ELA) 0 623 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF914ELA)\ parent encTfChipPk off\ shortLabel K562 MCM7 2\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF914ELA\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_fwd Mcf7ToEgf1_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward 0 623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_fwd Mcf7ToEgf1_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward 1 623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ ENCFF907RYE ENCFF907RYE bigWig PC-9: (4) H3K27ac, ENCFF907RYE 2 624 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF907RYE.bw\ color 255,205,0\ longLabel PC-9: (4) H3K27ac, ENCFF907RYE\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 126.3\ shortLabel ENCFF907RYE\ subGroups organ=lung view=H3K27ac_view simpleBiosample=PC-9 biosampleType=cell_line donor=ENCDO647UHQ dataType=typeH3k27ac\ track ENCFF907RYE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF467DDW ENCSR000BUV Peak bigBed 5 Ishikawa TCF12 peaks 4 624 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/433cc16b-0109-4338-bde3-c6e1e9f2ba2f/ENCFF467DDW.bigBed\ labelFields none\ longLabel Ishikawa TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF467DDW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF381NXB ENCSR000EPE Signal bigWig LHCN-M2 DNase signal 2 624 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/3e41a47c-4929-4d12-b1ca-b97d263d57da/ENCFF381NXB.bigWig\ color 6,218,147\ longLabel LHCN-M2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPE Signal\ track wgEncodeReg4Epigenetics_ENCFF381NXB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF634GXP ENCSR562ORH - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 624 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/c2ad2481-6179-4dce-91de-4f58fa9beab7/ENCFF634GXP.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR562ORH - strand\ track wgEncodeReg4RnaSeq_ENCFF634GXP\ type bigWig\ visibility full\ encTfChipPkENCFF288ZRD K562 MCM7 3 narrowPeak Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF288ZRD) 0 624 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MCM7 in K562 from ENCODE 3 (ENCFF288ZRD)\ parent encTfChipPk off\ shortLabel K562 MCM7 3\ subGroups cellType=K562 factor=MCM7\ track encTfChipPkENCFF288ZRD\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_rev Mcf7ToEgf1_02hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse 0 624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_rev Mcf7ToEgf1_02hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse 1 624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep2.CNhs12483.13104-140D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep2_CNhs12483_13104-140D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13104-140D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep2_CNhs12483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13104-140D8\ urlLabel FANTOM5 Details:\ ENCFF054VRQ ENCFF054VRQ bigWig Upper lobe of left lung, female adult (51 years): (4) H3K27ac, ENCFF054VRQ 2 625 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF054VRQ.bw\ color 255,205,0\ longLabel Upper lobe of left lung, female adult (51 years): (4) H3K27ac, ENCFF054VRQ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 163.3\ shortLabel ENCFF054VRQ\ subGroups organ=lung view=H3K27ac_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF054VRQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF087HTJ ENCSR000BUV Signal bigWig Ishikawa TCF12 ENCSR000BUV signal 2 625 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8a6203e7-8b0b-41aa-8f88-4c456f18f1d6/ENCFF087HTJ.bigWig\ color 186,111,165\ longLabel Ishikawa TCF12 ENCSR000BUV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUV Signal\ track wgEncodeReg4TfChip_ENCFF087HTJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF742DKA ENCSR000EPG Peak bigBed 5 M059J DNase peak 4 625 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/bcbcf03c-810f-4dd7-abe6-8f08877167dd/ENCFF742DKA.bigBed\ color 6,218,147\ labelFields none\ longLabel M059J DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPG Peak\ track wgEncodeReg4Epigenetics_ENCFF742DKA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF044YOY ENCSR563SJY + strand bigWig Dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal 2 625 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/4b150fa3-845b-480f-b425-feff2d0e27ce/ENCFF044YOY.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR563SJY + strand\ track wgEncodeReg4RnaSeq_ENCFF044YOY\ type bigWig\ visibility full\ encTfChipPkENCFF310SMW K562 MEF2A narrowPeak Transcription Factor ChIP-seq Peaks of MEF2A in K562 from ENCODE 3 (ENCFF310SMW) 0 625 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MEF2A in K562 from ENCODE 3 (ENCFF310SMW)\ parent encTfChipPk off\ shortLabel K562 MEF2A\ subGroups cellType=K562 factor=MEF2A\ track encTfChipPkENCFF310SMW\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_fwd Mcf7ToEgf1_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward 0 625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_fwd Mcf7ToEgf1_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward 1 625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ ENCFF441OEQ ENCFF441OEQ bigWig Left lung, male adult (40 years): (4) H3K27ac, ENCFF441OEQ 2 626 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF441OEQ.bw\ color 255,205,0\ longLabel Left lung, male adult (40 years): (4) H3K27ac, ENCFF441OEQ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 61.3\ shortLabel ENCFF441OEQ\ subGroups organ=lung view=H3K27ac_view simpleBiosample=left_lung-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeH3k27ac\ track ENCFF441OEQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF645GBT ENCSR000BUW Peak bigBed 5 HL-60 SPI1 peaks 4 626 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/54cf26d8-3941-4551-be5f-706580d05b75/ENCFF645GBT.bigBed\ labelFields none\ longLabel HL-60 SPI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF645GBT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF064TAE ENCSR000EPG Signal bigWig M059J DNase signal 2 626 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/01cda196-33da-4e00-8d65-4055915ced29/ENCFF064TAE.bigWig\ color 6,218,147\ longLabel M059J DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPG Signal\ track wgEncodeReg4Epigenetics_ENCFF064TAE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF590OZS ENCSR563SJY - strand bigWig Dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal 2 626 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/07fae957-c8b5-410c-b5fc-705c500e0368/ENCFF590OZS.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR563SJY - strand\ track wgEncodeReg4RnaSeq_ENCFF590OZS\ type bigWig\ visibility full\ encTfChipPkENCFF937UEE K562 MEIS2 narrowPeak Transcription Factor ChIP-seq Peaks of MEIS2 in K562 from ENCODE 3 (ENCFF937UEE) 0 626 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MEIS2 in K562 from ENCODE 3 (ENCFF937UEE)\ parent encTfChipPk off\ shortLabel K562 MEIS2\ subGroups cellType=K562 factor=MEIS2\ track encTfChipPkENCFF937UEE\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_rev Mcf7ToEgf1_02hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse 0 626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_rev Mcf7ToEgf1_02hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse 1 626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr00min%2c%20biol_rep3.CNhs12744.13170-141C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr00min, biol_rep3_CNhs12744_13170-141C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13170-141C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr00minBiolRep3_CNhs12744_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13170-141C2\ urlLabel FANTOM5 Details:\ ENCFF752LEN ENCFF752LEN bigWig Upper lobe of left lung, male adult (54 years): (4) H3K27ac, ENCFF752LEN 2 627 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF752LEN.bw\ color 255,205,0\ longLabel Upper lobe of left lung, male adult (54 years): (4) H3K27ac, ENCFF752LEN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 166.3\ shortLabel ENCFF752LEN\ subGroups organ=lung view=H3K27ac_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF752LEN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF590DUM ENCSR000BUW Signal bigWig HL-60 SPI1 ENCSR000BUW signal 2 627 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3383b2b0-c2c7-430b-94ed-01c48ed609d6/ENCFF590DUM.bigWig\ color 254,75,173\ longLabel HL-60 SPI1 ENCSR000BUW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUW Signal\ track wgEncodeReg4TfChip_ENCFF590DUM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF041VYA ENCSR000EPI Peak bigBed 5 MCF-7 treated with 100 nM estradiol for 1 hour DNase peak 4 627 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/d0939d55-7ae1-4712-acf1-c0bef7cf09ad/ENCFF041VYA.bigBed\ color 6,218,147\ labelFields none\ longLabel MCF-7 treated with 100 nM estradiol for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPI Peak\ track wgEncodeReg4Epigenetics_ENCFF041VYA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF233HOM ENCSR563VMC + strand bigWig Psoas muscle tissue female adult (61 years) + strand total RNA-seq signal 2 627 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/238ac704-4a57-4694-a29c-b4f343e82ad8/ENCFF233HOM.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR563VMC + strand\ track wgEncodeReg4RnaSeq_ENCFF233HOM\ type bigWig\ visibility full\ encTfChipPkENCFF525MPI K562 MGA narrowPeak Transcription Factor ChIP-seq Peaks of MGA in K562 from ENCODE 3 (ENCFF525MPI) 0 627 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MGA in K562 from ENCODE 3 (ENCFF525MPI)\ parent encTfChipPk off\ shortLabel K562 MGA\ subGroups cellType=K562 factor=MGA\ track encTfChipPkENCFF525MPI\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_fwd Mcf7ToEgf1_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward 0 627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_fwd Mcf7ToEgf1_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward 1 627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ ENCFF504NPN ENCFF504NPN bigWig Lower lobe of left lung, male adult (60 years): (4) H3K27ac, ENCFF504NPN 2 628 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF504NPN.bw\ color 255,205,0\ longLabel Lower lobe of left lung, male adult (60 years): (4) H3K27ac, ENCFF504NPN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 64.3\ shortLabel ENCFF504NPN\ subGroups organ=lung view=H3K27ac_view simpleBiosample=lower_lobe_of_left_lung-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeH3k27ac\ track ENCFF504NPN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF679ZBN ENCSR000BUX Peak bigBed 5 MCF-7 EGR1 peaks 4 628 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/941d8f0a-386c-4e7b-9240-2b2fb893fc78/ENCFF679ZBN.bigBed\ labelFields none\ longLabel MCF-7 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF679ZBN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF722WLB ENCSR000EPI Signal bigWig MCF-7 treated with 100 nM estradiol for 1 hour DNase signal 2 628 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/fb45aff4-e23c-4374-9a40-d92882e6e567/ENCFF722WLB.bigWig\ color 6,218,147\ longLabel MCF-7 treated with 100 nM estradiol for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPI Signal\ track wgEncodeReg4Epigenetics_ENCFF722WLB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF710VWY ENCSR563VMC - strand bigWig Psoas muscle tissue female adult (61 years) - strand total RNA-seq signal 2 628 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/447e3746-9a43-462f-856d-db5131aae920/ENCFF710VWY.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR563VMC - strand\ track wgEncodeReg4RnaSeq_ENCFF710VWY\ type bigWig\ visibility full\ encTfChipPkENCFF163YZB K562 MIER1 narrowPeak Transcription Factor ChIP-seq Peaks of MIER1 in K562 from ENCODE 3 (ENCFF163YZB) 0 628 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MIER1 in K562 from ENCODE 3 (ENCFF163YZB)\ parent encTfChipPk off\ shortLabel K562 MIER1\ subGroups cellType=K562 factor=MIER1\ track encTfChipPkENCFF163YZB\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_rev Mcf7ToEgf1_02hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse 0 628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_rev Mcf7ToEgf1_02hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse 1 628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep1.CNhs12427.13039-139F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep1_CNhs12427_13039-139F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13039-139F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep1_CNhs12427_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13039-139F6\ urlLabel FANTOM5 Details:\ ENCFF397ZHX ENCFF397ZHX bigWig Left lung, female child (16 years): (4) H3K27ac, ENCFF397ZHX 2 629 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF397ZHX.bw\ color 255,205,0\ longLabel Left lung, female child (16 years): (4) H3K27ac, ENCFF397ZHX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 60.3\ shortLabel ENCFF397ZHX\ subGroups organ=lung view=H3K27ac_view simpleBiosample=left_lung-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeH3k27ac\ track ENCFF397ZHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF419IBH ENCSR000BUX Signal bigWig MCF-7 EGR1 ENCSR000BUX signal 2 629 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/40cf2f7e-8d7f-4e21-b9a7-5a6c73d1abfe/ENCFF419IBH.bigWig\ color 65,171,173\ longLabel MCF-7 EGR1 ENCSR000BUX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUX Signal\ track wgEncodeReg4TfChip_ENCFF419IBH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF195VNB ENCSR000EPK Peak bigBed 5 CD14-positive monocyte female DNase peak 4 629 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/800a3862-a99f-4269-9ef3-605d331bd859/ENCFF195VNB.bigBed\ color 6,218,147\ labelFields none\ longLabel CD14-positive monocyte female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPK Peak\ track wgEncodeReg4Epigenetics_ENCFF195VNB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF087XDY ENCSR564CRW + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 629 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/1cb6ec2d-6197-483f-8067-a0e71b2f5012/ENCFF087XDY.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR564CRW + strand\ track wgEncodeReg4RnaSeq_ENCFF087XDY\ type bigWig\ visibility full\ encTfChipPkENCFF262TMM K562 MITF 1 narrowPeak Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF262TMM) 0 629 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF262TMM)\ parent encTfChipPk off\ shortLabel K562 MITF 1\ subGroups cellType=K562 factor=MITF\ track encTfChipPkENCFF262TMM\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_fwd Mcf7ToEgf1_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward 0 629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_fwd Mcf7ToEgf1_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward 1 629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ ENCFF174WAB ENCFF174WAB bigWig Upper lobe of left lung, female adult (53 years): (4) H3K27ac, ENCFF174WAB 2 630 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF174WAB.bw\ color 255,205,0\ longLabel Upper lobe of left lung, female adult (53 years): (4) H3K27ac, ENCFF174WAB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 164.3\ shortLabel ENCFF174WAB\ subGroups organ=lung view=H3K27ac_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF174WAB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF329FZB ENCSR000BUY Peak bigBed 5 MCF-7 NR2F2 peaks 4 630 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/08/99ed498a-c1dd-4b69-bff7-51cea70aebd4/ENCFF329FZB.bigBed\ labelFields none\ longLabel MCF-7 NR2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF329FZB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF389PZY ENCSR000EPK Signal bigWig CD14-positive monocyte female DNase signal 2 630 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/31cec132-6555-4b4e-a906-18ba1b587b94/ENCFF389PZY.bigWig\ color 6,218,147\ longLabel CD14-positive monocyte female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPK Signal\ track wgEncodeReg4Epigenetics_ENCFF389PZY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF110GNY ENCSR564CRW - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 630 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/0d2e5a2c-4463-40f2-838e-c3324a0b18d1/ENCFF110GNY.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR564CRW - strand\ track wgEncodeReg4RnaSeq_ENCFF110GNY\ type bigWig\ visibility full\ encTfChipPkENCFF071NYD K562 MITF 2 narrowPeak Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF071NYD) 0 630 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MITF in K562 from ENCODE 3 (ENCFF071NYD)\ parent encTfChipPk off\ shortLabel K562 MITF 2\ subGroups cellType=K562 factor=MITF\ track encTfChipPkENCFF071NYD\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_rev Mcf7ToEgf1_02hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse 0 630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_rev Mcf7ToEgf1_02hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse 1 630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep2.CNhs12484.13105-140D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep2_CNhs12484_13105-140D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13105-140D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep2_CNhs12484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13105-140D9\ urlLabel FANTOM5 Details:\ ENCFF607SXR ENCFF607SXR bigWig Upper lobe of left lung, male adult (37 years): (4) H3K27ac, ENCFF607SXR 2 631 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF607SXR.bw\ color 255,205,0\ longLabel Upper lobe of left lung, male adult (37 years): (4) H3K27ac, ENCFF607SXR\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 165.3\ shortLabel ENCFF607SXR\ subGroups organ=lung view=H3K27ac_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF607SXR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF816WPO ENCSR000BUY Signal bigWig MCF-7 NR2F2 ENCSR000BUY signal 2 631 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/08/25007267-76b1-48c7-a8f1-9810b4f6a6ee/ENCFF816WPO.bigWig\ color 65,171,173\ longLabel MCF-7 NR2F2 ENCSR000BUY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUY Signal\ track wgEncodeReg4TfChip_ENCFF816WPO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF046YFJ ENCSR000EPL Peak bigBed 5 NB4 DNase peak 4 631 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/cf02b92c-c264-42a1-9047-7a0f7234fe11/ENCFF046YFJ.bigBed\ color 6,218,147\ labelFields none\ longLabel NB4 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPL Peak\ track wgEncodeReg4Epigenetics_ENCFF046YFJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF139SIC ENCSR568UGZ + strand bigWig Lower lobe of left lung tissue female adult (61 years) + strand total RNA-seq signal 2 631 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/4a654655-acc0-4633-916f-17842ec97233/ENCFF139SIC.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue female adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR568UGZ + strand\ track wgEncodeReg4RnaSeq_ENCFF139SIC\ type bigWig\ visibility full\ encTfChipPkENCFF010AIG K562 MLLT1 1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF010AIG) 0 631 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF010AIG)\ parent encTfChipPk off\ shortLabel K562 MLLT1 1\ subGroups cellType=K562 factor=MLLT1\ track encTfChipPkENCFF010AIG\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_fwd Mcf7ToEgf1_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward 0 631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_fwd Mcf7ToEgf1_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward 1 631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ ENCFF375YPQ ENCFF375YPQ bigWig Lower lobe of left lung, female adult (59 years): (4) H3K27ac, ENCFF375YPQ 2 632 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF375YPQ.bw\ color 255,205,0\ longLabel Lower lobe of left lung, female adult (59 years): (4) H3K27ac, ENCFF375YPQ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 63.3\ shortLabel ENCFF375YPQ\ subGroups organ=lung view=H3K27ac_view simpleBiosample=lower_lobe_of_left_lung-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k27ac\ track ENCFF375YPQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF839EHA ENCSR000BUZ Peak bigBed 5 MCF-7 PML peaks 4 632 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/258f47d7-4bec-4d99-9802-3d9c08689324/ENCFF839EHA.bigBed\ labelFields none\ longLabel MCF-7 PML peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF839EHA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF238IRI ENCSR000EPL Signal bigWig NB4 DNase signal 2 632 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/e353032e-797d-49e9-b0a9-c66ce585a1f2/ENCFF238IRI.bigWig\ color 6,218,147\ longLabel NB4 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPL Signal\ track wgEncodeReg4Epigenetics_ENCFF238IRI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF385AXC ENCSR568UGZ - strand bigWig Lower lobe of left lung tissue female adult (61 years) - strand total RNA-seq signal 2 632 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/74112f12-a014-4819-a4f7-62890f4a6b83/ENCFF385AXC.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue female adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR568UGZ - strand\ track wgEncodeReg4RnaSeq_ENCFF385AXC\ type bigWig\ visibility full\ encTfChipPkENCFF388LUX K562 MLLT1 2 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF388LUX) 0 632 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in K562 from ENCODE 3 (ENCFF388LUX)\ parent encTfChipPk off\ shortLabel K562 MLLT1 2\ subGroups cellType=K562 factor=MLLT1\ track encTfChipPkENCFF388LUX\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_rev Mcf7ToEgf1_02hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse 0 632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_rev Mcf7ToEgf1_02hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse 1 632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2002hr30min%2c%20biol_rep3.CNhs12746.13171-141C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 02hr30min, biol_rep3_CNhs12746_13171-141C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13171-141C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF102hr30minBiolRep3_CNhs12746_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13171-141C3\ urlLabel FANTOM5 Details:\ ENCFF213BSP ENCFF213BSP bigWig A673: (4) H3K27ac, ENCFF213BSP 2 633 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF213BSP.bw\ color 255,205,0\ longLabel A673: (4) H3K27ac, ENCFF213BSP\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 1.3\ shortLabel ENCFF213BSP\ subGroups organ=muscle view=H3K27ac_view simpleBiosample=A673 biosampleType=cell_line donor=ENCDO027VXA dataType=typeH3k27ac\ track ENCFF213BSP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF616ZCX ENCSR000BUZ Signal bigWig MCF-7 PML ENCSR000BUZ signal 2 633 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/c4d1ba0a-3602-49a8-b2d8-59d0363c5840/ENCFF616ZCX.bigWig\ color 65,171,173\ longLabel MCF-7 PML ENCSR000BUZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BUZ Signal\ track wgEncodeReg4TfChip_ENCFF616ZCX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF478ZHH ENCSR000EPM Peak bigBed 5 Astrocyte DNase peak 4 633 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/5e12fd60-558f-4057-9856-e33c77d172fa/ENCFF478ZHH.bigBed\ color 6,218,147\ labelFields none\ longLabel Astrocyte DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPM Peak\ track wgEncodeReg4Epigenetics_ENCFF478ZHH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF205ELZ ENCSR568YRP + strand bigWig SJCRH30 + strand total RNA-seq signal 2 633 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/77c31068-ab90-4bc6-b71f-966c37ae15f1/ENCFF205ELZ.bigWig\ color 137,135,170\ longLabel SJCRH30 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR568YRP + strand\ track wgEncodeReg4RnaSeq_ENCFF205ELZ\ type bigWig\ visibility full\ encTfChipPkENCFF926CRV K562 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF926CRV) 0 633 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF926CRV)\ parent encTfChipPk off\ shortLabel K562 MNT 1\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF926CRV\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_fwd Mcf7ToEgf1_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward 0 633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_fwd Mcf7ToEgf1_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward 1 633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ ENCFF485DKZ ENCFF485DKZ bigWig Cardiac muscle cell, embryo: (4) H3K27ac, ENCFF485DKZ 2 634 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF485DKZ.bw\ color 255,205,0\ longLabel Cardiac muscle cell, embryo: (4) H3K27ac, ENCFF485DKZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 19.3\ shortLabel ENCFF485DKZ\ subGroups organ=muscle view=H3K27ac_view simpleBiosample=cardiac_muscle_cell-_embryo biosampleType=in_vitro_differentiated_cells donor=ENCDO924HBJ dataType=typeH3k27ac\ track ENCFF485DKZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF508RYE ENCSR000BVA Peak bigBed 5 MCF-7 SRF peaks 4 634 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/602b4016-ddf9-4813-8b7a-6e818d574c12/ENCFF508RYE.bigBed\ labelFields none\ longLabel MCF-7 SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF508RYE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF963PFR ENCSR000EPM Signal bigWig Astrocyte DNase signal 2 634 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/efec3471-ef3c-449d-9882-c6cde5e2e153/ENCFF963PFR.bigWig\ color 6,218,147\ longLabel Astrocyte DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPM Signal\ track wgEncodeReg4Epigenetics_ENCFF963PFR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF845HPD ENCSR568YRP - strand bigWig SJCRH30 - strand total RNA-seq signal 2 634 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/6668042b-8b8e-438b-8a96-38963f49141d/ENCFF845HPD.bigWig\ color 137,135,170\ longLabel SJCRH30 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR568YRP - strand\ track wgEncodeReg4RnaSeq_ENCFF845HPD\ type bigWig\ visibility full\ encTfChipPkENCFF454QQD K562 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF454QQD) 0 634 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF454QQD)\ parent encTfChipPk off\ shortLabel K562 MNT 2\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF454QQD\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_rev Mcf7ToEgf1_03hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse 0 634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_rev Mcf7ToEgf1_03hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse 1 634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep1.CNhs12428.13040-139F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep1_CNhs12428_13040-139F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13040-139F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep1_CNhs12428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13040-139F7\ urlLabel FANTOM5 Details:\ ENCFF638ZRF ENCFF638ZRF bigWig Gastrocnemius medialis, female adult (51 years): (4) H3K27ac, ENCFF638ZRF 2 635 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF638ZRF.bw\ color 255,205,0\ longLabel Gastrocnemius medialis, female adult (51 years): (4) H3K27ac, ENCFF638ZRF\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 29.3\ shortLabel ENCFF638ZRF\ subGroups organ=muscle view=H3K27ac_view simpleBiosample=gastrocnemius_medialis-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF638ZRF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF575VPC ENCSR000BVA Signal bigWig MCF-7 SRF ENCSR000BVA signal 2 635 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/1bfce4e6-8fa2-4678-af86-ab3df9f15234/ENCFF575VPC.bigWig\ color 65,171,173\ longLabel MCF-7 SRF ENCSR000BVA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVA Signal\ track wgEncodeReg4TfChip_ENCFF575VPC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF952RCR ENCSR000EPN Peak bigBed 5 Bronchial epithelial cell female treated with 6 μM retinoic acid for 48 hours DNase peak 4 635 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/11903876-f4b2-4a63-8c9c-a5366edc60a3/ENCFF952RCR.bigBed\ color 6,218,147\ labelFields none\ longLabel Bronchial epithelial cell female treated with 6 μM retinoic acid for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPN Peak\ track wgEncodeReg4Epigenetics_ENCFF952RCR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF187KHG ENCSR570DQR + strand bigWig Heart left ventricle tissue male adult (43 years) + strand total RNA-seq signal 2 635 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/907ce046-9f70-4c72-b6a4-f24df6548aec/ENCFF187KHG.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (43 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR570DQR + strand\ track wgEncodeReg4RnaSeq_ENCFF187KHG\ type bigWig\ visibility full\ encTfChipPkENCFF459DYU K562 MNT 3 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF459DYU) 0 635 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MNT in K562 from ENCODE 3 (ENCFF459DYU)\ parent encTfChipPk off\ shortLabel K562 MNT 3\ subGroups cellType=K562 factor=MNT\ track encTfChipPkENCFF459DYU\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_fwd Mcf7ToEgf1_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward 0 635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_fwd Mcf7ToEgf1_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward 1 635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ ENCFF149TEN ENCFF149TEN bigWig Gastrocnemius medialis, male adult (54 years): (4) H3K27ac, ENCFF149TEN 2 636 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF149TEN.bw\ color 255,205,0\ longLabel Gastrocnemius medialis, male adult (54 years): (4) H3K27ac, ENCFF149TEN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 32.3\ shortLabel ENCFF149TEN\ subGroups organ=muscle view=H3K27ac_view simpleBiosample=gastrocnemius_medialis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF149TEN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF127ZDW ENCSR000BVB Peak bigBed 5 SK-N-SH FOSL2 peaks 4 636 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/d4261632-7456-43d0-bb7c-5ef30cf2ffa3/ENCFF127ZDW.bigBed\ labelFields none\ longLabel SK-N-SH FOSL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF127ZDW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF638VPH ENCSR000EPN Signal bigWig Bronchial epithelial cell female treated with 6 μM retinoic acid for 48 hours DNase signal 2 636 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/3f16c826-1ed8-45dc-a1c7-4bf280ad9e6d/ENCFF638VPH.bigWig\ color 6,218,147\ longLabel Bronchial epithelial cell female treated with 6 μM retinoic acid for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPN Signal\ track wgEncodeReg4Epigenetics_ENCFF638VPH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF205NSS ENCSR570DQR - strand bigWig Heart left ventricle tissue male adult (43 years) - strand total RNA-seq signal 2 636 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/62d47dd2-327a-4a57-b089-2b6d97d8c744/ENCFF205NSS.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (43 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR570DQR - strand\ track wgEncodeReg4RnaSeq_ENCFF205NSS\ type bigWig\ visibility full\ encTfChipPkENCFF801KEW K562 MTA1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA1 in K562 from ENCODE 3 (ENCFF801KEW) 0 636 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA1 in K562 from ENCODE 3 (ENCFF801KEW)\ parent encTfChipPk off\ shortLabel K562 MTA1\ subGroups cellType=K562 factor=MTA1\ track encTfChipPkENCFF801KEW\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_rev Mcf7ToEgf1_03hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse 0 636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_rev Mcf7ToEgf1_03hr00minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse 1 636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep2.CNhs12485.13106-140E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep2_CNhs12485_13106-140E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13106-140E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep2_CNhs12485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13106-140E1\ urlLabel FANTOM5 Details:\ ENCFF825YXF ENCFF825YXF bigWig Gastrocnemius medialis, female adult (53 years): (4) H3K27ac, ENCFF825YXF 2 637 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF825YXF.bw\ color 255,205,0\ longLabel Gastrocnemius medialis, female adult (53 years): (4) H3K27ac, ENCFF825YXF\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 30.3\ shortLabel ENCFF825YXF\ subGroups organ=muscle view=H3K27ac_view simpleBiosample=gastrocnemius_medialis-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF825YXF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF858SNZ ENCSR000BVB Signal bigWig SK-N-SH FOSL2 ENCSR000BVB signal 2 637 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/80f9083e-02a4-44e1-ab98-348492815a17/ENCFF858SNZ.bigWig\ color 155,155,18\ longLabel SK-N-SH FOSL2 ENCSR000BVB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVB Signal\ track wgEncodeReg4TfChip_ENCFF858SNZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF053GZF ENCSR000EPO Peak bigBed 5 Fibroblast of dermis female adult DNase peak 4 637 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/269710e6-e982-4a0f-a469-df03f0f45c69/ENCFF053GZF.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of dermis female adult DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPO Peak\ track wgEncodeReg4Epigenetics_ENCFF053GZF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF025THJ ENCSR571RXE + strand bigWig Right atrium auricular region tissue female adult (53 years) + strand total RNA-seq signal 2 637 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b919387f-57f8-4292-b9ed-a3852dcdee6e/ENCFF025THJ.bigWig\ color 116,50,165\ longLabel Right atrium auricular region tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR571RXE + strand\ track wgEncodeReg4RnaSeq_ENCFF025THJ\ type bigWig\ visibility full\ encTfChipPkENCFF558XIL K562 MTA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF558XIL) 0 637 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF558XIL)\ parent encTfChipPk off\ shortLabel K562 MTA2 1\ subGroups cellType=K562 factor=MTA2\ track encTfChipPkENCFF558XIL\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_fwd Mcf7ToEgf1_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward 0 637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_fwd Mcf7ToEgf1_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward 1 637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ ENCFF322ZPK ENCFF322ZPK bigWig Esophagus muscularis mucosa, male adult (37 years): (4) H3K27ac, ENCFF322ZPK 2 638 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF322ZPK.bw\ color 255,205,0\ longLabel Esophagus muscularis mucosa, male adult (37 years): (4) H3K27ac, ENCFF322ZPK\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 27.3\ shortLabel ENCFF322ZPK\ subGroups organ=muscle view=H3K27ac_view simpleBiosample=esophagus_muscularis_mucosa-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF322ZPK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF053MLP ENCSR000BVC Peak bigBed 5 SK-N-SH MEF2A peaks 4 638 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/1cfd57e5-29b6-4553-b037-e3eb545bbec2/ENCFF053MLP.bigBed\ labelFields none\ longLabel SK-N-SH MEF2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF053MLP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF361BTT ENCSR000EPO Signal bigWig Fibroblast of dermis female adult DNase signal 2 638 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/178bdb47-5834-440e-8423-e6b0026240d2/ENCFF361BTT.bigWig\ color 6,218,147\ longLabel Fibroblast of dermis female adult DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPO Signal\ track wgEncodeReg4Epigenetics_ENCFF361BTT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF752XPX ENCSR571RXE - strand bigWig Right atrium auricular region tissue female adult (53 years) - strand total RNA-seq signal 2 638 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6bf4f5d2-1529-45d6-8602-78e308cd61ca/ENCFF752XPX.bigWig\ color 116,50,165\ longLabel Right atrium auricular region tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR571RXE - strand\ track wgEncodeReg4RnaSeq_ENCFF752XPX\ type bigWig\ visibility full\ encTfChipPkENCFF713ZVD K562 MTA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF713ZVD) 0 638 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in K562 from ENCODE 3 (ENCFF713ZVD)\ parent encTfChipPk off\ shortLabel K562 MTA2 2\ subGroups cellType=K562 factor=MTA2\ track encTfChipPkENCFF713ZVD\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_rev Mcf7ToEgf1_03hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse 0 638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_rev Mcf7ToEgf1_03hr00minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse 1 638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr00min%2c%20biol_rep3.CNhs12747.13172-141C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr00min, biol_rep3_CNhs12747_13172-141C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13172-141C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr00minBiolRep3_CNhs12747_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13172-141C4\ urlLabel FANTOM5 Details:\ ENCFF793HOY ENCFF793HOY bigWig Gastrocnemius medialis, male adult (37 years): (4) H3K27ac, ENCFF793HOY 2 639 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF793HOY.bw\ color 255,205,0\ longLabel Gastrocnemius medialis, male adult (37 years): (4) H3K27ac, ENCFF793HOY\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 31.3\ shortLabel ENCFF793HOY\ subGroups organ=muscle view=H3K27ac_view simpleBiosample=gastrocnemius_medialis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF793HOY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF874QFL ENCSR000BVC Signal bigWig SK-N-SH MEF2A ENCSR000BVC signal 2 639 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/73fec7a2-42b7-48e0-be34-5c707e73c1f6/ENCFF874QFL.bigWig\ color 155,155,18\ longLabel SK-N-SH MEF2A ENCSR000BVC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVC Signal\ track wgEncodeReg4TfChip_ENCFF874QFL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF354KVZ ENCSR000EPP Peak bigBed 5 Foreskin fibroblast male newborn DNase peak 4 639 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/5b9223ae-7178-4abe-bc61-974822be16ca/ENCFF354KVZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin fibroblast male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPP Peak\ track wgEncodeReg4Epigenetics_ENCFF354KVZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF462KBX ENCSR574PFY + strand bigWig Psoas muscle tissue female adult (41 years) + strand total RNA-seq signal 2 639 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/a9da8663-110a-451c-8c08-4a0203827890/ENCFF462KBX.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR574PFY + strand\ track wgEncodeReg4RnaSeq_ENCFF462KBX\ type bigWig\ visibility full\ encTfChipPkENCFF459XLR K562 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in K562 from ENCODE 3 (ENCFF459XLR) 0 639 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in K562 from ENCODE 3 (ENCFF459XLR)\ parent encTfChipPk off\ shortLabel K562 MTA3\ subGroups cellType=K562 factor=MTA3\ track encTfChipPkENCFF459XLR\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_fwd Mcf7ToEgf1_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward 0 639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_fwd Mcf7ToEgf1_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward 1 639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ ENCFF549DZD ENCFF549DZD bigWig Tibial nerve, female adult (51 years): (4) H3K27ac, ENCFF549DZD 2 640 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF549DZD.bw\ color 255,205,0\ longLabel Tibial nerve, female adult (51 years): (4) H3K27ac, ENCFF549DZD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 155.3\ shortLabel ENCFF549DZD\ subGroups organ=nerve view=H3K27ac_view simpleBiosample=tibial_nerve-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF549DZD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF285LXR ENCSR000BVD Peak bigBed 5 SK-N-SH MAX peaks 4 640 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/e4cb42b6-84d6-40df-b936-14dbc0d2716a/ENCFF285LXR.bigBed\ labelFields none\ longLabel SK-N-SH MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF285LXR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF927PNR ENCSR000EPP Signal bigWig Foreskin fibroblast male newborn DNase signal 2 640 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/4ab35408-7416-4c49-a331-0c2a1d08f439/ENCFF927PNR.bigWig\ color 6,218,147\ longLabel Foreskin fibroblast male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPP Signal\ track wgEncodeReg4Epigenetics_ENCFF927PNR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF144WWA ENCSR574PFY - strand bigWig Psoas muscle tissue female adult (41 years) - strand total RNA-seq signal 2 640 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/51181077-6ed9-423e-b063-5ae8ff728645/ENCFF144WWA.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR574PFY - strand\ track wgEncodeReg4RnaSeq_ENCFF144WWA\ type bigWig\ visibility full\ encTfChipPkENCFF243QTL K562 MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in K562 from ENCODE 3 (ENCFF243QTL) 0 640 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in K562 from ENCODE 3 (ENCFF243QTL)\ parent encTfChipPk off\ shortLabel K562 MXI1\ subGroups cellType=K562 factor=MXI1\ track encTfChipPkENCFF243QTL\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_rev Mcf7ToEgf1_03hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse 0 640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_rev Mcf7ToEgf1_03hr30minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse 1 640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep1.CNhs12429.13041-139F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep1_CNhs12429_13041-139F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13041-139F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep1_CNhs12429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13041-139F8\ urlLabel FANTOM5 Details:\ ENCFF758AQR ENCFF758AQR bigWig Tibial nerve, male adult (54 years): (4) H3K27ac, ENCFF758AQR 2 641 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF758AQR.bw\ color 255,205,0\ longLabel Tibial nerve, male adult (54 years): (4) H3K27ac, ENCFF758AQR\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 157.3\ shortLabel ENCFF758AQR\ subGroups organ=nerve view=H3K27ac_view simpleBiosample=tibial_nerve-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF758AQR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF067NCG ENCSR000BVD Signal bigWig SK-N-SH MAX ENCSR000BVD signal 2 641 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/b143b6ca-1507-4fa6-8edb-d4e6f0032aa8/ENCFF067NCG.bigWig\ color 155,155,18\ longLabel SK-N-SH MAX ENCSR000BVD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVD Signal\ track wgEncodeReg4TfChip_ENCFF067NCG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF287ONE ENCSR000EPQ Peak bigBed 5 Keratinocyte female DNase peak 4 641 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/cec5067d-abca-49ad-af7d-accbc684e8ef/ENCFF287ONE.bigBed\ color 6,218,147\ labelFields none\ longLabel Keratinocyte female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPQ Peak\ track wgEncodeReg4Epigenetics_ENCFF287ONE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF788FRD ENCSR579BDN + strand bigWig Pancreas tissue female adult (41 years) + strand total RNA-seq signal 2 641 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/040b4860-d8db-41f5-b36d-3b046da69ceb/ENCFF788FRD.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR579BDN + strand\ track wgEncodeReg4RnaSeq_ENCFF788FRD\ type bigWig\ visibility full\ encTfChipPkENCFF905KOD K562 MYBL2 narrowPeak Transcription Factor ChIP-seq Peaks of MYBL2 in K562 from ENCODE 3 (ENCFF905KOD) 0 641 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYBL2 in K562 from ENCODE 3 (ENCFF905KOD)\ parent encTfChipPk off\ shortLabel K562 MYBL2\ subGroups cellType=K562 factor=MYBL2\ track encTfChipPkENCFF905KOD\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_fwd Mcf7ToEgf1_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward 0 641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_fwd Mcf7ToEgf1_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward 1 641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ ENCFF038BIZ ENCFF038BIZ bigWig Tibial nerve, male adult (37 years): (4) H3K27ac, ENCFF038BIZ 2 642 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF038BIZ.bw\ color 255,205,0\ longLabel Tibial nerve, male adult (37 years): (4) H3K27ac, ENCFF038BIZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 156.3\ shortLabel ENCFF038BIZ\ subGroups organ=nerve view=H3K27ac_view simpleBiosample=tibial_nerve-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF038BIZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF876BMC ENCSR000BVE Peak bigBed 5 SK-N-SH PBX3 peaks 4 642 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/e8362a6e-8857-4a13-b5e2-d64eb3fac3e8/ENCFF876BMC.bigBed\ labelFields none\ longLabel SK-N-SH PBX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF876BMC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF494IGD ENCSR000EPQ Signal bigWig Keratinocyte female DNase signal 2 642 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/f9537ed9-cb94-458a-a3d7-110ec457756a/ENCFF494IGD.bigWig\ color 6,218,147\ longLabel Keratinocyte female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPQ Signal\ track wgEncodeReg4Epigenetics_ENCFF494IGD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF033ZKJ ENCSR579BDN - strand bigWig Pancreas tissue female adult (41 years) - strand total RNA-seq signal 2 642 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/809f9141-14e3-43a7-ad2c-7517038dddaa/ENCFF033ZKJ.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR579BDN - strand\ track wgEncodeReg4RnaSeq_ENCFF033ZKJ\ type bigWig\ visibility full\ encTfChipPkENCFF700TLG K562 MYC 1 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF700TLG) 0 642 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF700TLG)\ parent encTfChipPk on\ shortLabel K562 MYC 1\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF700TLG\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_rev Mcf7ToEgf1_03hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse 0 642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_rev Mcf7ToEgf1_03hr30minBr2- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse 1 642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep2.CNhs12486.13107-140E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep2_CNhs12486_13107-140E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13107-140E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep2_CNhs12486_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13107-140E2\ urlLabel FANTOM5 Details:\ ENCFF493AZX ENCFF493AZX bigWig Panc1: (4) H3K27ac, ENCFF493AZX 2 643 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF493AZX.bw\ color 255,205,0\ longLabel Panc1: (4) H3K27ac, ENCFF493AZX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 120.3\ shortLabel ENCFF493AZX\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=Panc1 biosampleType=cell_line donor=ENCDO000ABB dataType=typeH3k27ac\ track ENCFF493AZX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF943EXC ENCSR000BVE Signal bigWig SK-N-SH PBX3 ENCSR000BVE signal 2 643 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/d9e81206-5bb5-4fc5-b6f3-32812dfa3da7/ENCFF943EXC.bigWig\ color 155,155,18\ longLabel SK-N-SH PBX3 ENCSR000BVE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVE Signal\ track wgEncodeReg4TfChip_ENCFF943EXC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF469ITT ENCSR000EPR Peak bigBed 5 Fibroblast of lung male adult 45 years DNase peak 4 643 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/9335375c-539e-41e9-83e6-becac591e37e/ENCFF469ITT.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of lung male adult 45 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPR Peak\ track wgEncodeReg4Epigenetics_ENCFF469ITT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF705PZN ENCSR579KTN + strand bigWig Dorsolateral prefrontal cortex tissue female adult (83 years) + strand total RNA-seq signal 2 643 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/f4689325-788a-4eab-b377-fba2cdaadf27/ENCFF705PZN.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (83 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR579KTN + strand\ track wgEncodeReg4RnaSeq_ENCFF705PZN\ type bigWig\ visibility full\ encTfChipPkENCFF339AQP K562 MYC 2 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF339AQP) 0 643 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF339AQP)\ parent encTfChipPk off\ shortLabel K562 MYC 2\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF339AQP\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_fwd Mcf7ToEgf1_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward 0 643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_fwd Mcf7ToEgf1_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward 1 643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ ENCFF201DRD ENCFF201DRD bigWig Progenitor cell of endocrine pancreas, female embryo (5 days): (4) H3K27ac, ENCFF201DRD 2 644 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF201DRD.bw\ color 255,205,0\ longLabel Progenitor cell of endocrine pancreas, female embryo (5 days): (4) H3K27ac, ENCFF201DRD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 131.3\ shortLabel ENCFF201DRD\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=progenitor_cell_of_endocrine_pancreas-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF201DRD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF893DLM ENCSR000BVG Peak bigBed 5 SK-N-SH RXRA peaks 4 644 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/2fc76f1a-aa5d-4b6e-b3d4-6ebb43e50c22/ENCFF893DLM.bigBed\ labelFields none\ longLabel SK-N-SH RXRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF893DLM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF813HTP ENCSR000EPR Signal bigWig Fibroblast of lung male adult 45 years DNase signal 2 644 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/7448e75d-820b-4d26-ac0f-702044cf039b/ENCFF813HTP.bigWig\ color 6,218,147\ longLabel Fibroblast of lung male adult 45 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPR Signal\ track wgEncodeReg4Epigenetics_ENCFF813HTP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF354SCD ENCSR579KTN - strand bigWig Dorsolateral prefrontal cortex tissue female adult (83 years) - strand total RNA-seq signal 2 644 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/51763684-514d-41f1-9102-27f0d938dbc3/ENCFF354SCD.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (83 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR579KTN - strand\ track wgEncodeReg4RnaSeq_ENCFF354SCD\ type bigWig\ visibility full\ encTfChipPkENCFF492XUU K562 MYC 3 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF492XUU) 0 644 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF492XUU)\ parent encTfChipPk off\ shortLabel K562 MYC 3\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF492XUU\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_rev Mcf7ToEgf1_03hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse 0 644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_rev Mcf7ToEgf1_03hr30minBr3- bigWig MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse 1 644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2003hr30min%2c%20biol_rep3.CNhs12748.13173-141C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 03hr30min, biol_rep3_CNhs12748_13173-141C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13173-141C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF103hr30minBiolRep3_CNhs12748_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13173-141C5\ urlLabel FANTOM5 Details:\ ENCFF370QKJ ENCFF370QKJ bigWig Type B pancreatic cell, female embryo (5 days): (4) H3K27ac, ENCFF370QKJ 2 645 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF370QKJ.bw\ color 255,205,0\ longLabel Type B pancreatic cell, female embryo (5 days): (4) H3K27ac, ENCFF370QKJ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 162.3\ shortLabel ENCFF370QKJ\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=type_B_pancreatic_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k27ac\ track ENCFF370QKJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF358PGL ENCSR000BVG Signal bigWig SK-N-SH RXRA ENCSR000BVG signal 2 645 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/6dab2016-aefd-41d6-b4d8-799e5a4e53ee/ENCFF358PGL.bigWig\ color 155,155,18\ longLabel SK-N-SH RXRA ENCSR000BVG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVG Signal\ track wgEncodeReg4TfChip_ENCFF358PGL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF406DSH ENCSR000EPS Peak bigBed 5 NT2/D1 DNase peak 4 645 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/3b72a8e1-6026-447c-87fc-662dba8f85c7/ENCFF406DSH.bigBed\ color 6,218,147\ labelFields none\ longLabel NT2/D1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPS Peak\ track wgEncodeReg4Epigenetics_ENCFF406DSH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF228AHT ENCSR580GSX + strand bigWig A172 + strand total RNA-seq signal 2 645 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/1020ec9c-6dfe-4373-ba6d-1dfaf5150692/ENCFF228AHT.bigWig\ color 155,155,18\ longLabel A172 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR580GSX + strand\ track wgEncodeReg4RnaSeq_ENCFF228AHT\ type bigWig\ visibility full\ encTfChipPkENCFF527EGF K562 MYC 4 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF527EGF) 0 645 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF527EGF)\ parent encTfChipPk off\ shortLabel K562 MYC 4\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF527EGF\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_fwd Mcf7ToEgf1_04hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward 0 645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_fwd Mcf7ToEgf1_04hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward 1 645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ ENCFF948MEI ENCFF948MEI bigWig Pancreas, female adult (61 years): (4) H3K27ac, ENCFF948MEI 2 646 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF948MEI.bw\ color 255,205,0\ longLabel Pancreas, female adult (61 years): (4) H3K27ac, ENCFF948MEI\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 123.3\ shortLabel ENCFF948MEI\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=pancreas-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeH3k27ac\ track ENCFF948MEI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF354GUK ENCSR000BVH Peak bigBed 5 HCT116 ELF1 peaks 4 646 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6d9b23f6-4840-42b6-b8c3-13e142386b18/ENCFF354GUK.bigBed\ labelFields none\ longLabel HCT116 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF354GUK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF701NPD ENCSR000EPS Signal bigWig NT2/D1 DNase signal 2 646 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/bdba07de-89a2-4e60-8657-e9030d086999/ENCFF701NPD.bigWig\ color 6,218,147\ longLabel NT2/D1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPS Signal\ track wgEncodeReg4Epigenetics_ENCFF701NPD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF218ROS ENCSR580GSX - strand bigWig A172 - strand total RNA-seq signal 2 646 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/b558678a-0a55-4e34-9b91-bf75463c2e64/ENCFF218ROS.bigWig\ color 155,155,18\ longLabel A172 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR580GSX - strand\ track wgEncodeReg4RnaSeq_ENCFF218ROS\ type bigWig\ visibility full\ encTfChipPkENCFF605WXD K562 MYC 5 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF605WXD) 0 646 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYC in K562 from ENCODE 3 (ENCFF605WXD)\ parent encTfChipPk off\ shortLabel K562 MYC 5\ subGroups cellType=K562 factor=MYC\ track encTfChipPkENCFF605WXD\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_rev Mcf7ToEgf1_04hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse 0 646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_rev Mcf7ToEgf1_04hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse 1 646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep1.CNhs12430.13042-139F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep1_CNhs12430_13042-139F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13042-139F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep1_CNhs12430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13042-139F9\ urlLabel FANTOM5 Details:\ ENCFF853NJX ENCFF853NJX bigWig Body of pancreas, female adult (51 years): (4) H3K27ac, ENCFF853NJX 2 647 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF853NJX.bw\ color 255,205,0\ longLabel Body of pancreas, female adult (51 years): (4) H3K27ac, ENCFF853NJX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 13.3\ shortLabel ENCFF853NJX\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=body_of_pancreas-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF853NJX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF805TRK ENCSR000BVH Signal bigWig HCT116 ELF1 ENCSR000BVH signal 2 647 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8316ef47-d32d-4e96-b6ee-943fefdb7095/ENCFF805TRK.bigWig\ color 86,86,36\ longLabel HCT116 ELF1 ENCSR000BVH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVH Signal\ track wgEncodeReg4TfChip_ENCFF805TRK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF528QPM ENCSR000EPT Peak bigBed 5 Panc1 DNase peak 4 647 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/7fba80c7-2cfa-456d-ac60-2e37209dbb70/ENCFF528QPM.bigBed\ color 6,218,147\ labelFields none\ longLabel Panc1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPT Peak\ track wgEncodeReg4Epigenetics_ENCFF528QPM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF121VHL ENCSR584CVV + strand bigWig Natural killer cell female adult (41 years) + strand total RNA-seq signal 2 647 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/d664f52b-c29a-4081-ad11-656edc32a9cc/ENCFF121VHL.bigWig\ color 254,75,173\ longLabel Natural killer cell female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR584CVV + strand\ track wgEncodeReg4RnaSeq_ENCFF121VHL\ type bigWig\ visibility full\ encTfChipPkENCFF272LLG K562 MYNN narrowPeak Transcription Factor ChIP-seq Peaks of MYNN in K562 from ENCODE 3 (ENCFF272LLG) 0 647 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of MYNN in K562 from ENCODE 3 (ENCFF272LLG)\ parent encTfChipPk off\ shortLabel K562 MYNN\ subGroups cellType=K562 factor=MYNN\ track encTfChipPkENCFF272LLG\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_fwd Mcf7ToEgf1_04hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward 0 647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_fwd Mcf7ToEgf1_04hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward 1 647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ ENCFF940UMR ENCFF940UMR bigWig Body of pancreas, male adult (54 years): (4) H3K27ac, ENCFF940UMR 2 648 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF940UMR.bw\ color 255,205,0\ longLabel Body of pancreas, male adult (54 years): (4) H3K27ac, ENCFF940UMR\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 15.3\ shortLabel ENCFF940UMR\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=body_of_pancreas-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF940UMR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF929AYY ENCSR000BVI Peak bigBed 5 HCT116 REST peaks 4 648 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/84cfea09-c485-4cc6-af56-efad7f44644b/ENCFF929AYY.bigBed\ labelFields none\ longLabel HCT116 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF929AYY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF857RXA ENCSR000EPT Signal bigWig Panc1 DNase signal 2 648 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/c478f409-0acb-4eef-8cf7-439ad24347bc/ENCFF857RXA.bigWig\ color 6,218,147\ longLabel Panc1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPT Signal\ track wgEncodeReg4Epigenetics_ENCFF857RXA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF562TZY ENCSR584CVV - strand bigWig Natural killer cell female adult (41 years) - strand total RNA-seq signal 2 648 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/435ec6ad-2927-4af4-90d0-7f8f039e0870/ENCFF562TZY.bigWig\ color 254,75,173\ longLabel Natural killer cell female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR584CVV - strand\ track wgEncodeReg4RnaSeq_ENCFF562TZY\ type bigWig\ visibility full\ encTfChipPkENCFF728KKP K562 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in K562 from ENCODE 3 (ENCFF728KKP) 0 648 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NBN in K562 from ENCODE 3 (ENCFF728KKP)\ parent encTfChipPk off\ shortLabel K562 NBN\ subGroups cellType=K562 factor=NBN\ track encTfChipPkENCFF728KKP\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_rev Mcf7ToEgf1_04hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse 0 648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_rev Mcf7ToEgf1_04hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse 1 648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep2.CNhs12487.13108-140E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep2_CNhs12487_13108-140E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13108-140E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep2_CNhs12487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13108-140E3\ urlLabel FANTOM5 Details:\ ENCFF827CBM ENCFF827CBM bigWig Pancreas, female child (16 years): (4) H3K27ac, ENCFF827CBM 2 649 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF827CBM.bw\ color 255,205,0\ longLabel Pancreas, female child (16 years): (4) H3K27ac, ENCFF827CBM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 124.3\ shortLabel ENCFF827CBM\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=pancreas-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeH3k27ac\ track ENCFF827CBM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF825IKF ENCSR000BVI Signal bigWig HCT116 REST ENCSR000BVI signal 2 649 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/db211c61-a946-4a9a-9c68-a2321951c1be/ENCFF825IKF.bigWig\ color 86,86,36\ longLabel HCT116 REST ENCSR000BVI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVI Signal\ track wgEncodeReg4TfChip_ENCFF825IKF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF091SYM ENCSR000EPU Peak bigBed 5 Epithelial cell of prostate DNase peak 4 649 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/2e701fa7-92f3-4a5d-843e-d74e618a35bc/ENCFF091SYM.bigBed\ color 6,218,147\ labelFields none\ longLabel Epithelial cell of prostate DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPU Peak\ track wgEncodeReg4Epigenetics_ENCFF091SYM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF189JPF ENCSR584JXD + strand bigWig Caki2 + strand total RNA-seq signal 2 649 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/381cfaa0-f1ca-4f76-a97f-eb3695482f74/ENCFF189JPF.bigWig\ color 92,161,153\ longLabel Caki2 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR584JXD + strand\ track wgEncodeReg4RnaSeq_ENCFF189JPF\ type bigWig\ visibility full\ encTfChipPkENCFF589OOF K562 NCOA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF589OOF) 0 649 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF589OOF)\ parent encTfChipPk off\ shortLabel K562 NCOA1 1\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF589OOF\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_fwd Mcf7ToEgf1_04hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward 0 649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_fwd Mcf7ToEgf1_04hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward 1 649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ ENCFF859IVY ENCFF859IVY bigWig Pancreas, female adult (41 years): (4) H3K27ac, ENCFF859IVY 2 650 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF859IVY.bw\ color 255,205,0\ longLabel Pancreas, female adult (41 years): (4) H3K27ac, ENCFF859IVY\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 121.3\ shortLabel ENCFF859IVY\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=pancreas-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k27ac\ track ENCFF859IVY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF526YYD ENCSR000BVJ Peak bigBed 5 HCT116 TEAD4 peaks 4 650 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/334ed998-f230-4ac4-a8c9-fea84ec0d461/ENCFF526YYD.bigBed\ labelFields none\ longLabel HCT116 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF526YYD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF127HBC ENCSR000EPU Signal bigWig Epithelial cell of prostate DNase signal 2 650 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/5bf08e53-df73-48b7-ba57-bc9c3985a5ee/ENCFF127HBC.bigWig\ color 6,218,147\ longLabel Epithelial cell of prostate DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPU Signal\ track wgEncodeReg4Epigenetics_ENCFF127HBC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF715QEV ENCSR584JXD - strand bigWig Caki2 - strand total RNA-seq signal 2 650 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/206f0f88-94e9-4446-9a66-349d9cc592b8/ENCFF715QEV.bigWig\ color 92,161,153\ longLabel Caki2 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR584JXD - strand\ track wgEncodeReg4RnaSeq_ENCFF715QEV\ type bigWig\ visibility full\ encTfChipPkENCFF474QDS K562 NCOA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF474QDS) 0 650 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF474QDS)\ parent encTfChipPk off\ shortLabel K562 NCOA1 2\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF474QDS\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_rev Mcf7ToEgf1_04hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse 0 650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_rev Mcf7ToEgf1_04hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse 1 650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2004hr%2c%20biol_rep3.CNhs12749.13174-141C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 04hr, biol_rep3_CNhs12749_13174-141C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13174-141C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF104hrBiolRep3_CNhs12749_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13174-141C6\ urlLabel FANTOM5 Details:\ ENCFF989SFZ ENCFF989SFZ bigWig Body of pancreas, male adult (37 years): (4) H3K27ac, ENCFF989SFZ 2 651 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF989SFZ.bw\ color 255,205,0\ longLabel Body of pancreas, male adult (37 years): (4) H3K27ac, ENCFF989SFZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 14.3\ shortLabel ENCFF989SFZ\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=body_of_pancreas-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF989SFZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF317YMX ENCSR000BVJ Signal bigWig HCT116 TEAD4 ENCSR000BVJ signal 2 651 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/96777a06-4946-4590-8977-0b6cdf6432e3/ENCFF317YMX.bigWig\ color 86,86,36\ longLabel HCT116 TEAD4 ENCSR000BVJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVJ Signal\ track wgEncodeReg4TfChip_ENCFF317YMX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF231SHJ ENCSR000EPV Peak bigBed 5 RPMI7951 DNase peak 4 651 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/89e5889c-6ee8-4c37-a1ab-a569d18b8c65/ENCFF231SHJ.bigBed\ color 6,218,147\ labelFields none\ longLabel RPMI7951 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPV Peak\ track wgEncodeReg4Epigenetics_ENCFF231SHJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF438BHV ENCSR585EUI + strand bigWig Dorsolateral prefrontal cortex tissue female adult (82 years) + strand total RNA-seq signal 2 651 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/e30906ad-ac50-4bb2-aa75-249686623729/ENCFF438BHV.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (82 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR585EUI + strand\ track wgEncodeReg4RnaSeq_ENCFF438BHV\ type bigWig\ visibility full\ encTfChipPkENCFF382RFJ K562 NCOA1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF382RFJ) 0 651 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA1 in K562 from ENCODE 3 (ENCFF382RFJ)\ parent encTfChipPk off\ shortLabel K562 NCOA1 3\ subGroups cellType=K562 factor=NCOA1\ track encTfChipPkENCFF382RFJ\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_fwd Mcf7ToEgf1_05hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward 0 651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_fwd Mcf7ToEgf1_05hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward 1 651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ ENCFF306RJQ ENCFF306RJQ bigWig Pancreas, female adult (59 years): (4) H3K27ac, ENCFF306RJQ 2 652 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF306RJQ.bw\ color 255,205,0\ longLabel Pancreas, female adult (59 years): (4) H3K27ac, ENCFF306RJQ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 122.3\ shortLabel ENCFF306RJQ\ subGroups organ=pancreas view=H3K27ac_view simpleBiosample=pancreas-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k27ac\ track ENCFF306RJQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF330PYP ENCSR000BVK Peak bigBed 5 HCT116 USF1 peaks 4 652 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/dfb0d5ac-3028-4a29-8612-38e5c49ec377/ENCFF330PYP.bigBed\ labelFields none\ longLabel HCT116 USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF330PYP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF158FWS ENCSR000EPV Signal bigWig RPMI7951 DNase signal 2 652 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/ac5c0828-b425-4853-8d2d-402464ed62f1/ENCFF158FWS.bigWig\ color 6,218,147\ longLabel RPMI7951 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPV Signal\ track wgEncodeReg4Epigenetics_ENCFF158FWS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF079ZNM ENCSR585EUI - strand bigWig Dorsolateral prefrontal cortex tissue female adult (82 years) - strand total RNA-seq signal 2 652 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/fbecb1e7-a276-4636-ae1f-3aa90774e830/ENCFF079ZNM.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (82 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR585EUI - strand\ track wgEncodeReg4RnaSeq_ENCFF079ZNM\ type bigWig\ visibility full\ encTfChipPkENCFF071SOH K562 NCOA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF071SOH) 0 652 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF071SOH)\ parent encTfChipPk off\ shortLabel K562 NCOA2 1\ subGroups cellType=K562 factor=NCOA2\ track encTfChipPkENCFF071SOH\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_rev Mcf7ToEgf1_05hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse 0 652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_rev Mcf7ToEgf1_05hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse 1 652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep1.CNhs12431.13043-139G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep1_CNhs12431_13043-139G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13043-139G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep1_CNhs12431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13043-139G1\ urlLabel FANTOM5 Details:\ ENCFF426TLD ENCFF426TLD bigWig HFFc6: (4) H3K27ac, ENCFF426TLD 2 653 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF426TLD.bw\ color 255,205,0\ longLabel HFFc6: (4) H3K27ac, ENCFF426TLD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 55.3\ shortLabel ENCFF426TLD\ subGroups organ=penis view=H3K27ac_view simpleBiosample=HFFc6 biosampleType=cell_line donor=ENCDO737WWC dataType=typeH3k27ac\ track ENCFF426TLD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF427NMO ENCSR000BVK Signal bigWig HCT116 USF1 ENCSR000BVK signal 2 653 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e3d49be9-8a5c-4b7c-b5a5-50bd418e45ee/ENCFF427NMO.bigWig\ color 86,86,36\ longLabel HCT116 USF1 ENCSR000BVK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVK Signal\ track wgEncodeReg4TfChip_ENCFF427NMO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF338UJK ENCSR000EPW Peak bigBed 5 Epithelial cell of proximal tubule DNase peak 4 653 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/be5bfe7e-ee60-41eb-81d0-76697d11ef1e/ENCFF338UJK.bigBed\ color 6,218,147\ labelFields none\ longLabel Epithelial cell of proximal tubule DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPW Peak\ track wgEncodeReg4Epigenetics_ENCFF338UJK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF731FYT ENCSR586SYA + strand bigWig Body of pancreas tissue female adult (53 years) + strand total RNA-seq signal 2 653 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/e0773a58-a661-4848-a8da-53811bd06318/ENCFF731FYT.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR586SYA + strand\ track wgEncodeReg4RnaSeq_ENCFF731FYT\ type bigWig\ visibility full\ encTfChipPkENCFF584SNZ K562 NCOA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF584SNZ) 0 653 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA2 in K562 from ENCODE 3 (ENCFF584SNZ)\ parent encTfChipPk off\ shortLabel K562 NCOA2 2\ subGroups cellType=K562 factor=NCOA2\ track encTfChipPkENCFF584SNZ\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_fwd Mcf7ToEgf1_05hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward 0 653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_fwd Mcf7ToEgf1_05hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward 1 653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ ENCFF537PUA ENCFF537PUA bigWig PC-3: (4) H3K27ac, ENCFF537PUA 2 654 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF537PUA.bw\ color 255,205,0\ longLabel PC-3: (4) H3K27ac, ENCFF537PUA\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 125.3\ shortLabel ENCFF537PUA\ subGroups organ=prostate view=H3K27ac_view simpleBiosample=PC-3 biosampleType=cell_line donor=ENCDO349AAA dataType=typeH3k27ac\ track ENCFF537PUA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF245CBB ENCSR000BVL Peak bigBed 5 HepG2 CREB1 peaks 4 654 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/379c0bc8-e830-4f8e-8a0a-0ca9fa760abf/ENCFF245CBB.bigBed\ labelFields none\ longLabel HepG2 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF245CBB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF836MHB ENCSR000EPW Signal bigWig Epithelial cell of proximal tubule DNase signal 2 654 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/f805e3c2-8fcc-4083-ba90-a710030b9fdf/ENCFF836MHB.bigWig\ color 6,218,147\ longLabel Epithelial cell of proximal tubule DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPW Signal\ track wgEncodeReg4Epigenetics_ENCFF836MHB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF231WHO ENCSR586SYA - strand bigWig Body of pancreas tissue female adult (53 years) - strand total RNA-seq signal 2 654 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/4056d48a-6fac-4877-8ebf-3bd42761f2e7/ENCFF231WHO.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR586SYA - strand\ track wgEncodeReg4RnaSeq_ENCFF231WHO\ type bigWig\ visibility full\ encTfChipPkENCFF749HKV K562 NCOA4 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA4 in K562 from ENCODE 3 (ENCFF749HKV) 0 654 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA4 in K562 from ENCODE 3 (ENCFF749HKV)\ parent encTfChipPk off\ shortLabel K562 NCOA4\ subGroups cellType=K562 factor=NCOA4\ track encTfChipPkENCFF749HKV\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_rev Mcf7ToEgf1_05hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse 0 654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_rev Mcf7ToEgf1_05hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse 1 654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep2.CNhs12488.13109-140E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep2_CNhs12488_13109-140E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13109-140E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep2_CNhs12488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13109-140E4\ urlLabel FANTOM5 Details:\ ENCFF112GCV ENCFF112GCV bigWig Prostate gland, male adult (37 years): (4) H3K27ac, ENCFF112GCV 2 655 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF112GCV.bw\ color 255,205,0\ longLabel Prostate gland, male adult (37 years): (4) H3K27ac, ENCFF112GCV\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 132.3\ shortLabel ENCFF112GCV\ subGroups organ=prostate view=H3K27ac_view simpleBiosample=prostate_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF112GCV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF520PZN ENCSR000BVL Signal bigWig HepG2 CREB1 ENCSR000BVL signal 2 655 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1c967894-da62-4229-898c-63dd7fd79d3e/ENCFF520PZN.bigWig\ color 137,152,82\ longLabel HepG2 CREB1 ENCSR000BVL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVL Signal\ track wgEncodeReg4TfChip_ENCFF520PZN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF411NTD ENCSR000EPX Peak bigBed 5 Bronchial epithelial cell DNase peak 4 655 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/b7c3a190-0039-4fcd-880c-62defb0467de/ENCFF411NTD.bigBed\ color 6,218,147\ labelFields none\ longLabel Bronchial epithelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPX Peak\ track wgEncodeReg4Epigenetics_ENCFF411NTD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF660NRG ENCSR588TIV + strand bigWig T-helper 2 cell male adult (35 years) treated with 100 ng/mL Interleukin-4 for 36 hours, 5 μg/mL Interferon-gamma antibody for 36 hours + strand total RNA-seq signal 2 655 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/703d8e27-5812-4418-9034-af412046eaab/ENCFF660NRG.bigWig\ color 254,75,173\ longLabel T-helper 2 cell male adult (35 years) treated with 100 ng/mL Interleukin-4 for 36 hours, 5 μg/mL Interferon-gamma antibody for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR588TIV + strand\ track wgEncodeReg4RnaSeq_ENCFF660NRG\ type bigWig\ visibility full\ encTfChipPkENCFF438BWN K562 NCOA6 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA6 in K562 from ENCODE 3 (ENCFF438BWN) 0 655 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOA6 in K562 from ENCODE 3 (ENCFF438BWN)\ parent encTfChipPk off\ shortLabel K562 NCOA6\ subGroups cellType=K562 factor=NCOA6\ track encTfChipPkENCFF438BWN\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_fwd Mcf7ToEgf1_05hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward 0 655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_fwd Mcf7ToEgf1_05hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward 1 655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ ENCFF114QME ENCFF114QME bigWig GM23338: (4) H3K27ac, ENCFF114QME 2 656 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF114QME.bw\ color 255,205,0\ longLabel GM23338: (4) H3K27ac, ENCFF114QME\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 36.3\ shortLabel ENCFF114QME\ subGroups organ=skin view=H3K27ac_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeH3k27ac\ track ENCFF114QME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF483TVJ ENCSR000BVM Peak bigBed 5 HepG2 NR2F2 peaks 4 656 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/693f230b-1173-4021-91e0-9cd92fb980f2/ENCFF483TVJ.bigBed\ labelFields none\ longLabel HepG2 NR2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF483TVJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF514SPT ENCSR000EPX Signal bigWig Bronchial epithelial cell DNase signal 2 656 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/9ffc9b05-7c3b-4714-91a9-46af732bb4d7/ENCFF514SPT.bigWig\ color 6,218,147\ longLabel Bronchial epithelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPX Signal\ track wgEncodeReg4Epigenetics_ENCFF514SPT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF613YYC ENCSR588TIV - strand bigWig T-helper 2 cell male adult (35 years) treated with 100 ng/mL Interleukin-4 for 36 hours, 5 μg/mL Interferon-gamma antibody for 36 hours - strand total RNA-seq signal 2 656 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/0e6d2edb-4bbc-48bb-b024-5920ab203fa0/ENCFF613YYC.bigWig\ color 254,75,173\ longLabel T-helper 2 cell male adult (35 years) treated with 100 ng/mL Interleukin-4 for 36 hours, 5 μg/mL Interferon-gamma antibody for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR588TIV - strand\ track wgEncodeReg4RnaSeq_ENCFF613YYC\ type bigWig\ visibility full\ encTfChipPkENCFF856HUK K562 NCOR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF856HUK) 0 656 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF856HUK)\ parent encTfChipPk off\ shortLabel K562 NCOR1 1\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF856HUK\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_rev Mcf7ToEgf1_05hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse 0 656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_rev Mcf7ToEgf1_05hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse 1 656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2005hr%2c%20biol_rep3.CNhs12750.13175-141C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 05hr, biol_rep3_CNhs12750_13175-141C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13175-141C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF105hrBiolRep3_CNhs12750_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13175-141C7\ urlLabel FANTOM5 Details:\ ENCFF641QBD ENCFF641QBD bigWig GM23338: (4) H3K27ac, ENCFF641QBD 2 657 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF641QBD.bw\ color 255,205,0\ longLabel GM23338: (4) H3K27ac, ENCFF641QBD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 35.3\ shortLabel ENCFF641QBD\ subGroups organ=skin view=H3K27ac_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeH3k27ac\ track ENCFF641QBD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF180VJV ENCSR000BVM Signal bigWig HepG2 NR2F2 ENCSR000BVM signal 2 657 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/8ac49cca-24ed-4486-b525-c8b89a2e791f/ENCFF180VJV.bigWig\ color 137,152,82\ longLabel HepG2 NR2F2 ENCSR000BVM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVM Signal\ track wgEncodeReg4TfChip_ENCFF180VJV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF454VGD ENCSR000EPY Peak bigBed 5 SK-N-MC DNase peak 4 657 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/931fa333-1841-41e2-aea6-5f3e2a863191/ENCFF454VGD.bigBed\ color 6,218,147\ labelFields none\ longLabel SK-N-MC DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPY Peak\ track wgEncodeReg4Epigenetics_ENCFF454VGD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF034RBU ENCSR589EBT + strand bigWig Upper lobe of left lung tissue female adult (61 years) + strand total RNA-seq signal 2 657 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/746d508d-7183-4da2-b0ac-812a6dde0d80/ENCFF034RBU.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR589EBT + strand\ track wgEncodeReg4RnaSeq_ENCFF034RBU\ type bigWig\ visibility full\ encTfChipPkENCFF007ZUL K562 NCOR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF007ZUL) 0 657 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF007ZUL)\ parent encTfChipPk off\ shortLabel K562 NCOR1 2\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF007ZUL\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_fwd Mcf7ToEgf1_06hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward 0 657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_fwd Mcf7ToEgf1_06hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward 1 657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ ENCFF443TJZ ENCFF443TJZ bigWig Keratinocyte, female: (4) H3K27ac, ENCFF443TJZ 2 658 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF443TJZ.bw\ color 255,205,0\ longLabel Keratinocyte, female: (4) H3K27ac, ENCFF443TJZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 59.3\ shortLabel ENCFF443TJZ\ subGroups organ=skin view=H3K27ac_view simpleBiosample=keratinocyte-_female biosampleType=primary_cell donor=ENCDO268AAA dataType=typeH3k27ac\ track ENCFF443TJZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF808RQT ENCSR000BVN Peak bigBed 5 HepG2 ZEB1 peaks 4 658 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/6b03f473-5079-45f5-a214-38ecab1d95e6/ENCFF808RQT.bigBed\ labelFields none\ longLabel HepG2 ZEB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF808RQT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF296DEO ENCSR000EPY Signal bigWig SK-N-MC DNase signal 2 658 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/53e4cb3a-f5b3-4ab9-8f04-6fd38022c262/ENCFF296DEO.bigWig\ color 6,218,147\ longLabel SK-N-MC DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPY Signal\ track wgEncodeReg4Epigenetics_ENCFF296DEO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF501PQR ENCSR589EBT - strand bigWig Upper lobe of left lung tissue female adult (61 years) - strand total RNA-seq signal 2 658 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/bf29ae7c-cfa7-4dfb-a2a4-ff9dd7ab7cdc/ENCFF501PQR.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR589EBT - strand\ track wgEncodeReg4RnaSeq_ENCFF501PQR\ type bigWig\ visibility full\ encTfChipPkENCFF638IIC K562 NCOR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF638IIC) 0 658 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NCOR1 in K562 from ENCODE 3 (ENCFF638IIC)\ parent encTfChipPk off\ shortLabel K562 NCOR1 3\ subGroups cellType=K562 factor=NCOR1\ track encTfChipPkENCFF638IIC\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_rev Mcf7ToEgf1_06hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse 0 658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_rev Mcf7ToEgf1_06hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse 1 658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep1.CNhs12432.13044-139G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep1_CNhs12432_13044-139G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13044-139G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep1_CNhs12432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13044-139G2\ urlLabel FANTOM5 Details:\ ENCFF525KQP ENCFF525KQP bigWig Peyers patch, female adult (51 years): (4) H3K27ac, ENCFF525KQP 2 659 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF525KQP.bw\ color 255,205,0\ longLabel Peyers patch, female adult (51 years): (4) H3K27ac, ENCFF525KQP\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 127.3\ shortLabel ENCFF525KQP\ subGroups organ=small_intestine view=H3K27ac_view simpleBiosample=Peyers_patch-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF525KQP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF209WUY ENCSR000BVN Signal bigWig HepG2 ZEB1 ENCSR000BVN signal 2 659 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/7fd47810-7dc7-44cd-b4b4-eecb9d0eeff9/ENCFF209WUY.bigWig\ color 137,152,82\ longLabel HepG2 ZEB1 ENCSR000BVN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVN Signal\ track wgEncodeReg4TfChip_ENCFF209WUY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF423ZMB ENCSR000EPZ Peak bigBed 5 SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours DNase peak 4 659 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/676858c1-b356-4eb0-bb0a-5477ee99f168/ENCFF423ZMB.bigBed\ color 6,218,147\ labelFields none\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPZ Peak\ track wgEncodeReg4Epigenetics_ENCFF423ZMB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF594QYO ENCSR591NFI + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 659 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/9208142f-7fb3-421b-a05b-ee50ac9b7219/ENCFF594QYO.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR591NFI + strand\ track wgEncodeReg4RnaSeq_ENCFF594QYO\ type bigWig\ visibility full\ encTfChipPkENCFF755APC K562 NEUROD1 narrowPeak Transcription Factor ChIP-seq Peaks of NEUROD1 in K562 from ENCODE 3 (ENCFF755APC) 0 659 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NEUROD1 in K562 from ENCODE 3 (ENCFF755APC)\ parent encTfChipPk off\ shortLabel K562 NEUROD1\ subGroups cellType=K562 factor=NEUROD1\ track encTfChipPkENCFF755APC\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_fwd Mcf7ToEgf1_06hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward 0 659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_fwd Mcf7ToEgf1_06hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward 1 659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ ENCFF485RWJ ENCFF485RWJ bigWig Peyers patch, male adult (54 years): (4) H3K27ac, ENCFF485RWJ 2 660 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF485RWJ.bw\ color 255,205,0\ longLabel Peyers patch, male adult (54 years): (4) H3K27ac, ENCFF485RWJ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 130.3\ shortLabel ENCFF485RWJ\ subGroups organ=small_intestine view=H3K27ac_view simpleBiosample=Peyers_patch-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF485RWJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF318BWX ENCSR000BVO Peak bigBed 5 T47D JUND peaks 4 660 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/cf5173e8-1e1f-43c5-be27-5b8460c00cdc/ENCFF318BWX.bigBed\ labelFields none\ longLabel T47D JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF318BWX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF327CJX ENCSR000EPZ Signal bigWig SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours DNase signal 2 660 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/001b1ca7-281c-4291-a572-b085063acf1d/ENCFF327CJX.bigWig\ color 6,218,147\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EPZ Signal\ track wgEncodeReg4Epigenetics_ENCFF327CJX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF228UMC ENCSR591NFI - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 660 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/3cd73726-fb88-42a3-b888-eb4eec8b624f/ENCFF228UMC.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR591NFI - strand\ track wgEncodeReg4RnaSeq_ENCFF228UMC\ type bigWig\ visibility full\ encTfChipPkENCFF082EPO K562 NFATC3 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF082EPO) 0 660 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF082EPO)\ parent encTfChipPk off\ shortLabel K562 NFATC3 1\ subGroups cellType=K562 factor=NFATC3\ track encTfChipPkENCFF082EPO\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_rev Mcf7ToEgf1_06hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse 0 660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_rev Mcf7ToEgf1_06hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse 1 660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep2.CNhs12489.13110-140E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep2_CNhs12489_13110-140E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13110-140E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep2_CNhs12489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13110-140E5\ urlLabel FANTOM5 Details:\ ENCFF302XLU ENCFF302XLU bigWig Peyers patch, female adult (53 years): (4) H3K27ac, ENCFF302XLU 2 661 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF302XLU.bw\ color 255,205,0\ longLabel Peyers patch, female adult (53 years): (4) H3K27ac, ENCFF302XLU\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 128.3\ shortLabel ENCFF302XLU\ subGroups organ=small_intestine view=H3K27ac_view simpleBiosample=Peyers_patch-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF302XLU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF301TUF ENCSR000BVO Signal bigWig T47D JUND ENCSR000BVO signal 2 661 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/6878fe7f-0b74-455d-aa94-8dbf6465cfc9/ENCFF301TUF.bigWig\ color 65,171,173\ longLabel T47D JUND ENCSR000BVO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000BVO Signal\ track wgEncodeReg4TfChip_ENCFF301TUF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF753UVL ENCSR000EQA Peak bigBed 5 Skeletal muscle cell DNase peak 4 661 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/6dd98ad3-d247-4d3e-bf75-024b388d3c07/ENCFF753UVL.bigBed\ color 6,218,147\ labelFields none\ longLabel Skeletal muscle cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQA Peak\ track wgEncodeReg4Epigenetics_ENCFF753UVL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF435QTX ENCSR591ZCN + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 661 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/14062a33-81bc-4f7e-aea3-96638b2e39f7/ENCFF435QTX.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR591ZCN + strand\ track wgEncodeReg4RnaSeq_ENCFF435QTX\ type bigWig\ visibility full\ encTfChipPkENCFF430JFH K562 NFATC3 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF430JFH) 0 661 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFATC3 in K562 from ENCODE 3 (ENCFF430JFH)\ parent encTfChipPk off\ shortLabel K562 NFATC3 2\ subGroups cellType=K562 factor=NFATC3\ track encTfChipPkENCFF430JFH\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_fwd Mcf7ToEgf1_06hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward 0 661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_fwd Mcf7ToEgf1_06hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward 1 661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ ENCFF249ILQ ENCFF249ILQ bigWig Peyers patch, male adult (37 years): (4) H3K27ac, ENCFF249ILQ 2 662 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF249ILQ.bw\ color 255,205,0\ longLabel Peyers patch, male adult (37 years): (4) H3K27ac, ENCFF249ILQ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 129.3\ shortLabel ENCFF249ILQ\ subGroups organ=small_intestine view=H3K27ac_view simpleBiosample=Peyers_patch-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF249ILQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF336RCR ENCSR000DJX Peak bigBed 5 K562 stably expressing JUND JUND peaks 4 662 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/2b7f79e4-cb49-49d5-a677-f2cd245ad7bd/ENCFF336RCR.bigBed\ labelFields none\ longLabel K562 stably expressing JUND JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DJX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF336RCR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF534KRC ENCSR000EQA Signal bigWig Skeletal muscle cell DNase signal 2 662 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/3ce41173-86c5-437d-b44c-48ced50ee054/ENCFF534KRC.bigWig\ color 6,218,147\ longLabel Skeletal muscle cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQA Signal\ track wgEncodeReg4Epigenetics_ENCFF534KRC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF947WGB ENCSR591ZCN - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 662 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/9859cfd5-3d1e-4712-b159-8573db30413c/ENCFF947WGB.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR591ZCN - strand\ track wgEncodeReg4RnaSeq_ENCFF947WGB\ type bigWig\ visibility full\ encTfChipPkENCFF312XHI K562 NFE2 narrowPeak Transcription Factor ChIP-seq Peaks of NFE2 in K562 from ENCODE 3 (ENCFF312XHI) 0 662 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFE2 in K562 from ENCODE 3 (ENCFF312XHI)\ parent encTfChipPk off\ shortLabel K562 NFE2\ subGroups cellType=K562 factor=NFE2\ track encTfChipPkENCFF312XHI\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_rev Mcf7ToEgf1_06hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse 0 662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_rev Mcf7ToEgf1_06hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse 1 662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2006hr%2c%20biol_rep3.CNhs12751.13176-141C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 06hr, biol_rep3_CNhs12751_13176-141C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13176-141C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF106hrBiolRep3_CNhs12751_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13176-141C8\ urlLabel FANTOM5 Details:\ ENCFF438NSZ ENCFF438NSZ bigWig Spleen, female adult (61 years): (4) H3K27ac, ENCFF438NSZ 2 663 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF438NSZ.bw\ color 255,205,0\ longLabel Spleen, female adult (61 years): (4) H3K27ac, ENCFF438NSZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 142.3\ shortLabel ENCFF438NSZ\ subGroups organ=spleen view=H3K27ac_view simpleBiosample=spleen-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeH3k27ac\ track ENCFF438NSZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF931KUD ENCSR000DJX Signal bigWig K562 stably expressing JUND JUND ENCSR000DJX signal 2 663 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/f4aa3108-ab41-45ae-9372-d67ece3973f9/ENCFF931KUD.bigWig\ color 254,75,173\ longLabel K562 stably expressing JUND JUND ENCSR000DJX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DJX Signal\ track wgEncodeReg4TfChip_ENCFF931KUD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF206QYG ENCSR000EQB Peak bigBed 5 T47D DNase peak 4 663 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/92ee79aa-923b-4e25-a0ac-ab1a0fd04274/ENCFF206QYG.bigBed\ color 6,218,147\ labelFields none\ longLabel T47D DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQB Peak\ track wgEncodeReg4Epigenetics_ENCFF206QYG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF827UHC ENCSR593MZL + strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 663 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/322f3f3c-5da9-4875-a592-754c18e400c5/ENCFF827UHC.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR593MZL + strand\ track wgEncodeReg4RnaSeq_ENCFF827UHC\ type bigWig\ visibility full\ encTfChipPkENCFF092TVM K562 NFIC narrowPeak Transcription Factor ChIP-seq Peaks of NFIC in K562 from ENCODE 3 (ENCFF092TVM) 0 663 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFIC in K562 from ENCODE 3 (ENCFF092TVM)\ parent encTfChipPk off\ shortLabel K562 NFIC\ subGroups cellType=K562 factor=NFIC\ track encTfChipPkENCFF092TVM\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_fwd Mcf7ToEgf1_07hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward 0 663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_fwd Mcf7ToEgf1_07hrBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward 1 663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ ENCFF634AAL ENCFF634AAL bigWig Spleen, female adult (41 years): (4) H3K27ac, ENCFF634AAL 2 664 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF634AAL.bw\ color 255,205,0\ longLabel Spleen, female adult (41 years): (4) H3K27ac, ENCFF634AAL\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 139.3\ shortLabel ENCFF634AAL\ subGroups organ=spleen view=H3K27ac_view simpleBiosample=spleen-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k27ac\ track ENCFF634AAL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF388SEP ENCSR000DJY Peak bigBed 5 K562 stably expressing JUNB JUNB peaks 4 664 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/61ee35ab-374a-4d1a-9cb9-05c90d654ec8/ENCFF388SEP.bigBed\ labelFields none\ longLabel K562 stably expressing JUNB JUNB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DJY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF388SEP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF085GPE ENCSR000EQB Signal bigWig T47D DNase signal 2 664 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/42e97106-eb1e-4692-800b-d9734257f113/ENCFF085GPE.bigWig\ color 6,218,147\ longLabel T47D DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQB Signal\ track wgEncodeReg4Epigenetics_ENCFF085GPE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF606UME ENCSR593MZL - strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 664 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/de4ec6ba-cce5-4395-8d4e-bcb2197d385a/ENCFF606UME.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR593MZL - strand\ track wgEncodeReg4RnaSeq_ENCFF606UME\ type bigWig\ visibility full\ encTfChipPkENCFF158FUG K562 NFRKB 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF158FUG) 0 664 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF158FUG)\ parent encTfChipPk off\ shortLabel K562 NFRKB 1\ subGroups cellType=K562 factor=NFRKB\ track encTfChipPkENCFF158FUG\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_rev Mcf7ToEgf1_07hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse 0 664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_rev Mcf7ToEgf1_07hrBr1- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse 1 664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep1.CNhs12434.13045-139G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep1_CNhs12434_13045-139G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13045-139G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep1_CNhs12434_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13045-139G3\ urlLabel FANTOM5 Details:\ ENCFF987FRB ENCFF987FRB bigWig Spleen, female adult (53 years): (4) H3K27ac, ENCFF987FRB 2 665 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF987FRB.bw\ color 255,205,0\ longLabel Spleen, female adult (53 years): (4) H3K27ac, ENCFF987FRB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 140.3\ shortLabel ENCFF987FRB\ subGroups organ=spleen view=H3K27ac_view simpleBiosample=spleen-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF987FRB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF837YHG ENCSR000DJY Signal bigWig K562 stably expressing JUNB JUNB ENCSR000DJY signal 2 665 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/6d3a37ae-0034-4bea-a258-bb09639a94b5/ENCFF837YHG.bigWig\ color 254,75,173\ longLabel K562 stably expressing JUNB JUNB ENCSR000DJY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DJY Signal\ track wgEncodeReg4TfChip_ENCFF837YHG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF271FDS ENCSR000EQC Peak bigBed 5 T-helper 1 cell DNase peak 4 665 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/f4909c1e-d2fd-409c-bf95-5a3f51821fb9/ENCFF271FDS.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQC Peak\ track wgEncodeReg4Epigenetics_ENCFF271FDS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF455CDH ENCSR596KAH + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 665 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/d129500f-e0fa-45f1-a3f3-4714fa82ab53/ENCFF455CDH.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR596KAH + strand\ track wgEncodeReg4RnaSeq_ENCFF455CDH\ type bigWig\ visibility full\ encTfChipPkENCFF779KIS K562 NFRKB 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF779KIS) 0 665 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in K562 from ENCODE 3 (ENCFF779KIS)\ parent encTfChipPk off\ shortLabel K562 NFRKB 2\ subGroups cellType=K562 factor=NFRKB\ track encTfChipPkENCFF779KIS\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_fwd Mcf7ToEgf1_07hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward 0 665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_fwd Mcf7ToEgf1_07hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward 1 665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ ENCFF428HQD ENCFF428HQD bigWig Spleen, female adult (59 years): (4) H3K27ac, ENCFF428HQD 2 666 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF428HQD.bw\ color 255,205,0\ longLabel Spleen, female adult (59 years): (4) H3K27ac, ENCFF428HQD\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 141.3\ shortLabel ENCFF428HQD\ subGroups organ=spleen view=H3K27ac_view simpleBiosample=spleen-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k27ac\ track ENCFF428HQD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF452GZK ENCSR000DJZ Peak bigBed 5 K562 stably expressing HDAC8 HDAC8 peaks 4 666 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/84f7864b-3a38-44a1-9a35-887e5f0d6f82/ENCFF452GZK.bigBed\ labelFields none\ longLabel K562 stably expressing HDAC8 HDAC8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DJZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF452GZK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF387DGS ENCSR000EQC Signal bigWig T-helper 1 cell DNase signal 2 666 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/ad4969af-de27-4e2f-8395-a68021d26d86/ENCFF387DGS.bigWig\ color 6,218,147\ longLabel T-helper 1 cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQC Signal\ track wgEncodeReg4Epigenetics_ENCFF387DGS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF630MQF ENCSR596KAH - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 666 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/d52256cd-fa4d-476b-9acb-08f1856a7a82/ENCFF630MQF.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR596KAH - strand\ track wgEncodeReg4RnaSeq_ENCFF630MQF\ type bigWig\ visibility full\ encTfChipPkENCFF329STX K562 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in K562 from ENCODE 3 (ENCFF329STX) 0 666 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in K562 from ENCODE 3 (ENCFF329STX)\ parent encTfChipPk off\ shortLabel K562 NFXL1\ subGroups cellType=K562 factor=NFXL1\ track encTfChipPkENCFF329STX\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_rev Mcf7ToEgf1_07hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse 0 666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_rev Mcf7ToEgf1_07hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse 1 666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep2.CNhs12490.13111-140E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep2_CNhs12490_13111-140E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13111-140E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep2_CNhs12490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13111-140E6\ urlLabel FANTOM5 Details:\ ENCFF732NXU ENCFF732NXU bigWig Stomach, female adult (51 years): (4) H3K27ac, ENCFF732NXU 2 667 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF732NXU.bw\ color 255,205,0\ longLabel Stomach, female adult (51 years): (4) H3K27ac, ENCFF732NXU\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 143.3\ shortLabel ENCFF732NXU\ subGroups organ=stomach view=H3K27ac_view simpleBiosample=stomach-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF732NXU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF167WLX ENCSR000DJZ Signal bigWig K562 stably expressing HDAC8 HDAC8 ENCSR000DJZ signal 2 667 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/8ac9b01b-2d58-4b87-b09e-c720b2f08efc/ENCFF167WLX.bigWig\ color 254,75,173\ longLabel K562 stably expressing HDAC8 HDAC8 ENCSR000DJZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DJZ Signal\ track wgEncodeReg4TfChip_ENCFF167WLX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF011GNV ENCSR000EQD Peak bigBed 5 T-helper 1 cell female adult 26 years DNase peak 4 667 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/db92ae0b-649a-430d-83e8-20ada57b31d4/ENCFF011GNV.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell female adult 26 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQD Peak\ track wgEncodeReg4Epigenetics_ENCFF011GNV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF007ZBY ENCSR609NZM + strand bigWig Gastrocnemius medialis tissue female adult (51 years) + strand total RNA-seq signal 2 667 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/3c7cef66-7e81-4958-9f24-ccbe435209c5/ENCFF007ZBY.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR609NZM + strand\ track wgEncodeReg4RnaSeq_ENCFF007ZBY\ type bigWig\ visibility full\ encTfChipPkENCFF305OOU K562 NR0B1 narrowPeak Transcription Factor ChIP-seq Peaks of NR0B1 in K562 from ENCODE 3 (ENCFF305OOU) 0 667 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR0B1 in K562 from ENCODE 3 (ENCFF305OOU)\ parent encTfChipPk off\ shortLabel K562 NR0B1\ subGroups cellType=K562 factor=NR0B1\ track encTfChipPkENCFF305OOU\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_fwd Mcf7ToEgf1_07hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward 0 667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_fwd Mcf7ToEgf1_07hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward 1 667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ ENCFF493RLF ENCFF493RLF bigWig Stomach, male adult (54 years): (4) H3K27ac, ENCFF493RLF 2 668 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF493RLF.bw\ color 255,205,0\ longLabel Stomach, male adult (54 years): (4) H3K27ac, ENCFF493RLF\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 146.3\ shortLabel ENCFF493RLF\ subGroups organ=stomach view=H3K27ac_view simpleBiosample=stomach-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF493RLF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF830LLA ENCSR000DKA Peak bigBed 5 K562 stably expressing GATA2 GATA2 peaks 4 668 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/cc2bd895-9400-4768-b35b-1f33c44cc81b/ENCFF830LLA.bigBed\ labelFields none\ longLabel K562 stably expressing GATA2 GATA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF830LLA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF156FHK ENCSR000EQD Signal bigWig T-helper 1 cell female adult 26 years DNase signal 2 668 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/fdafc8b6-ae4e-4b7c-8e5e-7e8288ce5442/ENCFF156FHK.bigWig\ color 6,218,147\ longLabel T-helper 1 cell female adult 26 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQD Signal\ track wgEncodeReg4Epigenetics_ENCFF156FHK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF518WGP ENCSR609NZM - strand bigWig Gastrocnemius medialis tissue female adult (51 years) - strand total RNA-seq signal 2 668 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/da9840ce-1935-4175-bc09-c7fa3453b238/ENCFF518WGP.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR609NZM - strand\ track wgEncodeReg4RnaSeq_ENCFF518WGP\ type bigWig\ visibility full\ encTfChipPkENCFF023XHV K562 NR2C1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C1 in K562 from ENCODE 3 (ENCFF023XHV) 0 668 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2C1 in K562 from ENCODE 3 (ENCFF023XHV)\ parent encTfChipPk off\ shortLabel K562 NR2C1\ subGroups cellType=K562 factor=NR2C1\ track encTfChipPkENCFF023XHV\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_rev Mcf7ToEgf1_07hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse 0 668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_rev Mcf7ToEgf1_07hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse 1 668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2007hr%2c%20biol_rep3.CNhs12752.13177-141C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 07hr, biol_rep3_CNhs12752_13177-141C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13177-141C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF107hrBiolRep3_CNhs12752_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13177-141C9\ urlLabel FANTOM5 Details:\ ENCFF225PPI ENCFF225PPI bigWig Stomach, female adult (53 years): (4) H3K27ac, ENCFF225PPI 2 669 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF225PPI.bw\ color 255,205,0\ longLabel Stomach, female adult (53 years): (4) H3K27ac, ENCFF225PPI\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 144.3\ shortLabel ENCFF225PPI\ subGroups organ=stomach view=H3K27ac_view simpleBiosample=stomach-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF225PPI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF602MQL ENCSR000DKA Signal bigWig K562 stably expressing GATA2 GATA2 ENCSR000DKA signal 2 669 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/171a1932-2a40-4a2d-af97-81b1dfde9888/ENCFF602MQL.bigWig\ color 254,75,173\ longLabel K562 stably expressing GATA2 GATA2 ENCSR000DKA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKA Signal\ track wgEncodeReg4TfChip_ENCFF602MQL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF162PVO ENCSR000EQE Peak bigBed 5 T-helper 1 cell male adult 33 years DNase peak 4 669 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/94da8f7d-fefd-460f-9d58-ee7e1f6e4d63/ENCFF162PVO.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell male adult 33 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQE Peak\ track wgEncodeReg4Epigenetics_ENCFF162PVO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF585HTZ ENCSR615EEK + strand bigWig K562 + strand total RNA-seq signal 2 669 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/2b5767d4-57fc-4a6f-b50b-660d164f77b4/ENCFF585HTZ.bigWig\ color 254,75,173\ longLabel K562 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR615EEK + strand\ track wgEncodeReg4RnaSeq_ENCFF585HTZ\ type bigWig\ visibility full\ encTfChipPkENCFF791ZPU K562 NR2C2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2C2 in K562 from ENCODE 3 (ENCFF791ZPU) 0 669 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2C2 in K562 from ENCODE 3 (ENCFF791ZPU)\ parent encTfChipPk off\ shortLabel K562 NR2C2\ subGroups cellType=K562 factor=NR2C2\ track encTfChipPkENCFF791ZPU\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_fwd Mcf7ToEgf1_08hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward 0 669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_fwd Mcf7ToEgf1_08hrBr2+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward 1 669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ ENCFF975CDE ENCFF975CDE bigWig Stomach, male adult (37 years): (4) H3K27ac, ENCFF975CDE 2 670 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF975CDE.bw\ color 255,205,0\ longLabel Stomach, male adult (37 years): (4) H3K27ac, ENCFF975CDE\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 145.3\ shortLabel ENCFF975CDE\ subGroups organ=stomach view=H3K27ac_view simpleBiosample=stomach-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF975CDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF398BXN ENCSR000DKM Peak bigBed 5 H54 POLR2A peaks 4 670 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/64ecbefd-22d3-4354-bc35-0c80db52fa66/ENCFF398BXN.bigBed\ labelFields none\ longLabel H54 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF398BXN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF863TXC ENCSR000EQE Signal bigWig T-helper 1 cell male adult 33 years DNase signal 2 670 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/f8b93258-bfbe-493c-98ba-58ee4a8d82d7/ENCFF863TXC.bigWig\ color 6,218,147\ longLabel T-helper 1 cell male adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQE Signal\ track wgEncodeReg4Epigenetics_ENCFF863TXC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF876JOV ENCSR615EEK - strand bigWig K562 - strand total RNA-seq signal 2 670 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/92b9cac8-9587-417b-b3bc-abc7059bf075/ENCFF876JOV.bigWig\ color 254,75,173\ longLabel K562 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR615EEK - strand\ track wgEncodeReg4RnaSeq_ENCFF876JOV\ type bigWig\ visibility full\ encTfChipPkENCFF363IQN K562 NR2F1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F1 in K562 from ENCODE 3 (ENCFF363IQN) 0 670 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2F1 in K562 from ENCODE 3 (ENCFF363IQN)\ parent encTfChipPk off\ shortLabel K562 NR2F1\ subGroups cellType=K562 factor=NR2F1\ track encTfChipPkENCFF363IQN\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_rev Mcf7ToEgf1_08hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse 0 670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_rev Mcf7ToEgf1_08hrBr2- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse 1 670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep2.CNhs12491.13112-140E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep2_CNhs12491_13112-140E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13112-140E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep2_CNhs12491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13112-140E7\ urlLabel FANTOM5 Details:\ ENCFF246QNM ENCFF246QNM bigWig Testis, male adult (54 years): (4) H3K27ac, ENCFF246QNM 2 671 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF246QNM.bw\ color 255,205,0\ longLabel Testis, male adult (54 years): (4) H3K27ac, ENCFF246QNM\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 148.3\ shortLabel ENCFF246QNM\ subGroups organ=testis view=H3K27ac_view simpleBiosample=testis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF246QNM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF090STA ENCSR000DKM Signal bigWig H54 POLR2A ENCSR000DKM signal 2 671 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/02a80b7d-052c-46fc-9711-eacdb27436e8/ENCFF090STA.bigWig\ color 155,155,18\ longLabel H54 POLR2A ENCSR000DKM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKM Signal\ track wgEncodeReg4TfChip_ENCFF090STA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF305YJL ENCSR000EQF Peak bigBed 5 T-helper 17 cell DNase peak 4 671 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/a5d9f829-fa81-4b29-9e36-a50330f14f0f/ENCFF305YJL.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 17 cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQF Peak\ track wgEncodeReg4Epigenetics_ENCFF305YJL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF592NIB ENCSR619DQO + strand bigWig Ureter tissue female adult (47 years) + strand total RNA-seq signal 2 671 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/455fc60f-5588-4b8e-bb50-ead0c7b74b11/ENCFF592NIB.bigWig\ color 92,161,153\ longLabel Ureter tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR619DQO + strand\ track wgEncodeReg4RnaSeq_ENCFF592NIB\ type bigWig\ visibility full\ encTfChipPkENCFF118HUH K562 NR2F2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in K562 from ENCODE 3 (ENCFF118HUH) 0 671 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in K562 from ENCODE 3 (ENCFF118HUH)\ parent encTfChipPk off\ shortLabel K562 NR2F2\ subGroups cellType=K562 factor=NR2F2\ track encTfChipPkENCFF118HUH\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_fwd Mcf7ToEgf1_08hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward 0 671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_fwd Mcf7ToEgf1_08hrBr3+ bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward 1 671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=forward\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ ENCFF487SXN ENCFF487SXN bigWig Testis, male adult (37 years): (4) H3K27ac, ENCFF487SXN 2 672 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF487SXN.bw\ color 255,205,0\ longLabel Testis, male adult (37 years): (4) H3K27ac, ENCFF487SXN\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 147.3\ shortLabel ENCFF487SXN\ subGroups organ=testis view=H3K27ac_view simpleBiosample=testis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF487SXN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF879HHE ENCSR000DKN Peak bigBed 5 H54 CTCF peaks 4 672 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/18/5511c1fe-e9b3-41b0-98d6-cce1153eb85f/ENCFF879HHE.bigBed\ labelFields none\ longLabel H54 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF879HHE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF554LFC ENCSR000EQF Signal bigWig T-helper 17 cell DNase signal 2 672 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/67528c11-af18-44fb-b865-c57b220dc2ce/ENCFF554LFC.bigWig\ color 6,218,147\ longLabel T-helper 17 cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQF Signal\ track wgEncodeReg4Epigenetics_ENCFF554LFC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF921PHQ ENCSR619DQO - strand bigWig Ureter tissue female adult (47 years) - strand total RNA-seq signal 2 672 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/8b6bb87f-27bc-4de6-829d-d3e61fcde050/ENCFF921PHQ.bigWig\ color 92,161,153\ longLabel Ureter tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR619DQO - strand\ track wgEncodeReg4RnaSeq_ENCFF921PHQ\ type bigWig\ visibility full\ encTfChipPkENCFF194VBK K562 NR2F6 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F6 in K562 from ENCODE 3 (ENCFF194VBK) 0 672 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR2F6 in K562 from ENCODE 3 (ENCFF194VBK)\ parent encTfChipPk off\ shortLabel K562 NR2F6\ subGroups cellType=K562 factor=NR2F6\ track encTfChipPkENCFF194VBK\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_rev Mcf7ToEgf1_08hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse 0 672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_rev Mcf7ToEgf1_08hrBr3- bigWig MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse 1 672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2008hr%2c%20biol_rep3.CNhs12753.13178-141D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 08hr, biol_rep3_CNhs12753_13178-141D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13178-141D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_EGF strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF108hrBiolRep3_CNhs12753_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13178-141D1\ urlLabel FANTOM5 Details:\ ENCFF774RLX ENCFF774RLX bigWig Thyroid gland, female adult (51 years): (4) H3K27ac, ENCFF774RLX 2 673 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF774RLX.bw\ color 255,205,0\ longLabel Thyroid gland, female adult (51 years): (4) H3K27ac, ENCFF774RLX\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 150.3\ shortLabel ENCFF774RLX\ subGroups organ=thyroid view=H3K27ac_view simpleBiosample=thyroid_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF774RLX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF930UCG ENCSR000DKN Signal bigWig H54 CTCF ENCSR000DKN signal 2 673 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c9ec014e-2331-4ff6-bb84-cec93767f79b/ENCFF930UCG.bigWig\ color 155,155,18\ longLabel H54 CTCF ENCSR000DKN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKN Signal\ track wgEncodeReg4TfChip_ENCFF930UCG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF748QKC ENCSR000EQG Peak bigBed 5 T-helper 2 cell DNase peak 4 673 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/229589f4-868f-4e26-9c96-9197bae150bf/ENCFF748QKC.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 2 cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQG Peak\ track wgEncodeReg4Epigenetics_ENCFF748QKC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF973BSN ENCSR620LQN + strand bigWig Esophagus muscularis mucosa tissue female adult (51 years) + strand total RNA-seq signal 2 673 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/aa8f297a-86d8-43ef-b1b3-0d6897aa4a11/ENCFF973BSN.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR620LQN + strand\ track wgEncodeReg4RnaSeq_ENCFF973BSN\ type bigWig\ visibility full\ encTfChipPkENCFF821YMC K562 NR3C1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF821YMC) 0 673 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF821YMC)\ parent encTfChipPk off\ shortLabel K562 NR3C1 1\ subGroups cellType=K562 factor=NR3C1\ track encTfChipPkENCFF821YMC\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward 0 673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward 1 673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ ENCFF573DJV ENCFF573DJV bigWig Thyroid gland, male adult (54 years): (4) H3K27ac, ENCFF573DJV 2 674 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF573DJV.bw\ color 255,205,0\ longLabel Thyroid gland, male adult (54 years): (4) H3K27ac, ENCFF573DJV\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 153.3\ shortLabel ENCFF573DJV\ subGroups organ=thyroid view=H3K27ac_view simpleBiosample=thyroid_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k27ac\ track ENCFF573DJV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF083HVS ENCSR000DKP Peak bigBed 5 GM10248 CTCF peaks 4 674 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a52f4b29-465e-4be0-baa3-c58c1f5aec55/ENCFF083HVS.bigBed\ labelFields none\ longLabel GM10248 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF083HVS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF561ETS ENCSR000EQG Signal bigWig T-helper 2 cell DNase signal 2 674 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/28190bdf-9607-4f36-923e-1e15ec9cd3ea/ENCFF561ETS.bigWig\ color 6,218,147\ longLabel T-helper 2 cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQG Signal\ track wgEncodeReg4Epigenetics_ENCFF561ETS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF700SGM ENCSR620LQN - strand bigWig Esophagus muscularis mucosa tissue female adult (51 years) - strand total RNA-seq signal 2 674 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/40dd87ec-a02d-4579-9c1c-f178fbec4b49/ENCFF700SGM.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR620LQN - strand\ track wgEncodeReg4RnaSeq_ENCFF700SGM\ type bigWig\ visibility full\ encTfChipPkENCFF315MUH K562 NR3C1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF315MUH) 0 674 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NR3C1 in K562 from ENCODE 3 (ENCFF315MUH)\ parent encTfChipPk off\ shortLabel K562 NR3C1 2\ subGroups cellType=K562 factor=NR3C1\ track encTfChipPkENCFF315MUH\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_rev Tc:Mcf7ToHrg_00hr15minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse 0 674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_rev Tc:Mcf7ToHrg_00hr15minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse 1 674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep1.CNhs12435.13048-139G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep1_CNhs12435_13048-139G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13048-139G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep1_CNhs12435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13048-139G6\ urlLabel FANTOM5 Details:\ ENCFF050PLB ENCFF050PLB bigWig Thyroid gland, female adult (53 years): (4) H3K27ac, ENCFF050PLB 2 675 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF050PLB.bw\ color 255,205,0\ longLabel Thyroid gland, female adult (53 years): (4) H3K27ac, ENCFF050PLB\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 151.3\ shortLabel ENCFF050PLB\ subGroups organ=thyroid view=H3K27ac_view simpleBiosample=thyroid_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF050PLB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF775HGO ENCSR000DKP Signal bigWig GM10248 CTCF ENCSR000DKP signal 2 675 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d508f3c4-3abb-4cdf-aa42-269eaf7a5544/ENCFF775HGO.bigWig\ color 254,75,173\ longLabel GM10248 CTCF ENCSR000DKP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKP Signal\ track wgEncodeReg4TfChip_ENCFF775HGO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF625PRN ENCSR000EQH Peak bigBed 5 T-helper 2 cell female adult 26 years DNase peak 4 675 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/9e371093-7aa7-4b0e-9722-d7c3ec458e36/ENCFF625PRN.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 2 cell female adult 26 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQH Peak\ track wgEncodeReg4Epigenetics_ENCFF625PRN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF549UKW ENCSR620NSN + strand bigWig Bronchus fibroblast of lung + strand total RNA-seq signal 2 675 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/8c78bd97-ccf3-4b29-9fda-ab99badb06cb/ENCFF549UKW.bigWig\ color 130,163,45\ longLabel Bronchus fibroblast of lung + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR620NSN + strand\ track wgEncodeReg4RnaSeq_ENCFF549UKW\ type bigWig\ visibility full\ encTfChipPkENCFF543STN K562 NRF1 1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF543STN) 0 675 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF543STN)\ parent encTfChipPk off\ shortLabel K562 NRF1 1\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF543STN\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward 0 675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward 1 675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ ENCFF546UQS ENCFF546UQS bigWig Thyroid gland, male adult (37 years): (4) H3K27ac, ENCFF546UQS 2 676 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF546UQS.bw\ color 255,205,0\ longLabel Thyroid gland, male adult (37 years): (4) H3K27ac, ENCFF546UQS\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 152.3\ shortLabel ENCFF546UQS\ subGroups organ=thyroid view=H3K27ac_view simpleBiosample=thyroid_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k27ac\ track ENCFF546UQS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF241YYF ENCSR000DKR Peak bigBed 5 GM10266 CTCF peaks 4 676 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/47bfb0b9-9516-4044-9d2d-dde64ee0206d/ENCFF241YYF.bigBed\ labelFields none\ longLabel GM10266 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF241YYF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF572PBN ENCSR000EQH Signal bigWig T-helper 2 cell female adult 26 years DNase signal 2 676 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/37566148-8698-49f7-bf09-3d207cd650a2/ENCFF572PBN.bigWig\ color 6,218,147\ longLabel T-helper 2 cell female adult 26 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQH Signal\ track wgEncodeReg4Epigenetics_ENCFF572PBN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF586JHA ENCSR620NSN - strand bigWig Bronchus fibroblast of lung - strand total RNA-seq signal 2 676 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/2cf37729-93f1-4cd8-921d-e93dfb71d3cd/ENCFF586JHA.bigWig\ color 130,163,45\ longLabel Bronchus fibroblast of lung - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR620NSN - strand\ track wgEncodeReg4RnaSeq_ENCFF586JHA\ type bigWig\ visibility full\ encTfChipPkENCFF626VDA K562 NRF1 2 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF626VDA) 0 676 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF626VDA)\ parent encTfChipPk off\ shortLabel K562 NRF1 2\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF626VDA\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_rev Tc:Mcf7ToHrg_00hr15minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse 0 676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_rev Tc:Mcf7ToHrg_00hr15minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse 1 676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep2.CNhs12652.13114-140E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep2_CNhs12652_13114-140E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13114-140E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep2_CNhs12652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13114-140E9\ urlLabel FANTOM5 Details:\ ENCFF658XKZ ENCFF658XKZ bigWig HeLa-S3: (4) H3K27ac, ENCFF658XKZ 2 677 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF658XKZ.bw\ color 255,205,0\ longLabel HeLa-S3: (4) H3K27ac, ENCFF658XKZ\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 52.3\ shortLabel ENCFF658XKZ\ subGroups organ=uterus view=H3K27ac_view simpleBiosample=HeLa-S3 biosampleType=cell_line donor=ENCDO000AAB dataType=typeH3k27ac\ track ENCFF658XKZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF156BQJ ENCSR000DKR Signal bigWig GM10266 CTCF ENCSR000DKR signal 2 677 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d1e78efa-6d90-49c5-be68-77f32ccbfef7/ENCFF156BQJ.bigWig\ color 254,75,173\ longLabel GM10266 CTCF ENCSR000DKR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKR Signal\ track wgEncodeReg4TfChip_ENCFF156BQJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF549MER ENCSR000EQI Peak bigBed 5 T-helper 2 cell male adult 33 years DNase peak 4 677 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/7e873edd-3b2e-4728-a0e1-697da39445f8/ENCFF549MER.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 2 cell male adult 33 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQI Peak\ track wgEncodeReg4Epigenetics_ENCFF549MER\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF309IAM ENCSR620YAV + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 677 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/eae804d4-da60-40a4-a26b-5c5ba2c51fdc/ENCFF309IAM.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR620YAV + strand\ track wgEncodeReg4RnaSeq_ENCFF309IAM\ type bigWig\ visibility full\ encTfChipPkENCFF782YFS K562 NRF1 3 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF782YFS) 0 677 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in K562 from ENCODE 3 (ENCFF782YFS)\ parent encTfChipPk off\ shortLabel K562 NRF1 3\ subGroups cellType=K562 factor=NRF1\ track encTfChipPkENCFF782YFS\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_fwd Tc:Mcf7ToHrg_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward 0 677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_fwd Tc:Mcf7ToHrg_00hr15minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward 1 677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ ENCFF154QOP ENCFF154QOP bigWig Uterus, female adult (53 years): (4) H3K27ac, ENCFF154QOP 2 678 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF154QOP.bw\ color 255,205,0\ longLabel Uterus, female adult (53 years): (4) H3K27ac, ENCFF154QOP\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 167.3\ shortLabel ENCFF154QOP\ subGroups organ=uterus view=H3K27ac_view simpleBiosample=uterus-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF154QOP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF631ERR ENCSR000DKT Peak bigBed 5 GM12878 POLR2A peaks 4 678 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/4211a512-8950-44ae-9b6b-cfa54fd7110f/ENCFF631ERR.bigBed\ labelFields none\ longLabel GM12878 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF631ERR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF069CDV ENCSR000EQI Signal bigWig T-helper 2 cell male adult 33 years DNase signal 2 678 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/187b78dd-a73e-48ac-89c6-abc2f9950b95/ENCFF069CDV.bigWig\ color 6,218,147\ longLabel T-helper 2 cell male adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQI Signal\ track wgEncodeReg4Epigenetics_ENCFF069CDV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF092RWL ENCSR620YAV - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 678 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/63ab032e-5f25-45d8-8025-5f4b4bacfc75/ENCFF092RWL.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR620YAV - strand\ track wgEncodeReg4RnaSeq_ENCFF092RWL\ type bigWig\ visibility full\ encTfChipPkENCFF885JMZ K562 NUFIP1 narrowPeak Transcription Factor ChIP-seq Peaks of NUFIP1 in K562 from ENCODE 3 (ENCFF885JMZ) 0 678 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of NUFIP1 in K562 from ENCODE 3 (ENCFF885JMZ)\ parent encTfChipPk off\ shortLabel K562 NUFIP1\ subGroups cellType=K562 factor=NUFIP1\ track encTfChipPkENCFF885JMZ\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_rev Tc:Mcf7ToHrg_00hr15minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse 0 678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_rev Tc:Mcf7ToHrg_00hr15minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse 1 678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr15min%2c%20biol_rep3.CNhs12754.13180-141D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr15min, biol_rep3_CNhs12754_13180-141D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13180-141D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr15minBiolRep3_CNhs12754_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13180-141D3\ urlLabel FANTOM5 Details:\ ENCFF092VQF ENCFF092VQF bigWig Vagina, female adult (51 years): (4) H3K27ac, ENCFF092VQF 2 679 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF092VQF.bw\ color 255,205,0\ longLabel Vagina, female adult (51 years): (4) H3K27ac, ENCFF092VQF\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 168.3\ shortLabel ENCFF092VQF\ subGroups organ=vagina view=H3K27ac_view simpleBiosample=vagina-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k27ac\ track ENCFF092VQF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF200WHZ ENCSR000DKT Signal bigWig GM12878 POLR2A ENCSR000DKT signal 2 679 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/5a35fca2-8a38-4a88-89ce-ee9f6982463e/ENCFF200WHZ.bigWig\ color 254,75,173\ longLabel GM12878 POLR2A ENCSR000DKT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKT Signal\ track wgEncodeReg4TfChip_ENCFF200WHZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF231KEA ENCSR000EQJ Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult 35 years DNase peak 4 679 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/4e317032-ed85-48c1-853d-a8722284a157/ENCFF231KEA.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQJ Peak\ track wgEncodeReg4Epigenetics_ENCFF231KEA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF733JPK ENCSR621PZI + strand bigWig Spleen tissue female adult (41 years) + strand total RNA-seq signal 2 679 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/c125fe85-1d97-45ef-a928-fac2ff9b1e0e/ENCFF733JPK.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR621PZI + strand\ track wgEncodeReg4RnaSeq_ENCFF733JPK\ type bigWig\ visibility full\ encTfChipPkENCFF467RYH K562 PCBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP1 in K562 from ENCODE 3 (ENCFF467RYH) 0 679 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PCBP1 in K562 from ENCODE 3 (ENCFF467RYH)\ parent encTfChipPk off\ shortLabel K562 PCBP1\ subGroups cellType=K562 factor=PCBP1\ track encTfChipPkENCFF467RYH\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward 0 679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward 1 679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ ENCFF738HRV ENCFF738HRV bigWig Vagina, female adult (53 years): (4) H3K27ac, ENCFF738HRV 2 680 255 205 0 255 230 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF738HRV.bw\ color 255,205,0\ longLabel Vagina, female adult (53 years): (4) H3K27ac, ENCFF738HRV\ maxHeightPixels 30\ parent H3K27ac_view off\ priority 169.3\ shortLabel ENCFF738HRV\ subGroups organ=vagina view=H3K27ac_view simpleBiosample=vagina-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k27ac\ track ENCFF738HRV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF168NSM ENCSR000DKU Peak bigBed 5 GM12878 MYC peaks 4 680 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/0957a059-09e8-40b2-9e94-80815f474021/ENCFF168NSM.bigBed\ labelFields none\ longLabel GM12878 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF168NSM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF806NHY ENCSR000EQJ Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult 35 years DNase signal 2 680 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/18/bee97bef-daa8-4f35-bd8e-b8b35ad71f8f/ENCFF806NHY.bigWig\ color 6,218,147\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQJ Signal\ track wgEncodeReg4Epigenetics_ENCFF806NHY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF852YRE ENCSR621PZI - strand bigWig Spleen tissue female adult (41 years) - strand total RNA-seq signal 2 680 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/afec7cee-d447-4bed-9f7d-db431b1fa426/ENCFF852YRE.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR621PZI - strand\ track wgEncodeReg4RnaSeq_ENCFF852YRE\ type bigWig\ visibility full\ encTfChipPkENCFF941XZW K562 PCBP2 narrowPeak Transcription Factor ChIP-seq Peaks of PCBP2 in K562 from ENCODE 3 (ENCFF941XZW) 0 680 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PCBP2 in K562 from ENCODE 3 (ENCFF941XZW)\ parent encTfChipPk off\ shortLabel K562 PCBP2\ subGroups cellType=K562 factor=PCBP2\ track encTfChipPkENCFF941XZW\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_rev Tc:Mcf7ToHrg_00hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse 0 680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_rev Tc:Mcf7ToHrg_00hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse 1 680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep1.CNhs12436.13049-139G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep1_CNhs12436_13049-139G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13049-139G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep1_CNhs12436_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13049-139G7\ urlLabel FANTOM5 Details:\ ENCFF672KET ENCFF672KET bigWig Adrenal gland, female adult (51 years): (3) H3K4me3, ENCFF672KET 2 681 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF672KET.bw\ color 255,0,0\ longLabel Adrenal gland, female adult (51 years): (3) H3K4me3, ENCFF672KET\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 3.2\ shortLabel ENCFF672KET\ subGroups organ=adrenal_gland view=H3K4me3_view simpleBiosample=adrenal_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF672KET\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF405YWN ENCSR000DKU Signal bigWig GM12878 MYC ENCSR000DKU signal 2 681 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/b9cd8234-113d-4a86-bbc4-ebe8e003f1b7/ENCFF405YWN.bigWig\ color 254,75,173\ longLabel GM12878 MYC ENCSR000DKU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKU Signal\ track wgEncodeReg4TfChip_ENCFF405YWN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF067AQL ENCSR000EQK Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 28 years DNase peak 4 681 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/4cddf012-0281-486c-9531-044b80cf2ccb/ENCFF067AQL.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 28 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQK Peak\ track wgEncodeReg4Epigenetics_ENCFF067AQL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF808SDN ENCSR622PIH + strand bigWig Right cardiac atrium tissue female adult (59 years) + strand total RNA-seq signal 2 681 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/38041c0a-7f59-486b-b7f0-57853f72b65d/ENCFF808SDN.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR622PIH + strand\ track wgEncodeReg4RnaSeq_ENCFF808SDN\ type bigWig\ visibility full\ encTfChipPkENCFF988OXX K562 PHB2 narrowPeak Transcription Factor ChIP-seq Peaks of PHB2 in K562 from ENCODE 3 (ENCFF988OXX) 0 681 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHB2 in K562 from ENCODE 3 (ENCFF988OXX)\ parent encTfChipPk off\ shortLabel K562 PHB2\ subGroups cellType=K562 factor=PHB2\ track encTfChipPkENCFF988OXX\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward 0 681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward 1 681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ ENCFF263CSV ENCFF263CSV bigWig Adrenal gland, male adult (54 years): (3) H3K4me3, ENCFF263CSV 2 682 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF263CSV.bw\ color 255,0,0\ longLabel Adrenal gland, male adult (54 years): (3) H3K4me3, ENCFF263CSV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 6.2\ shortLabel ENCFF263CSV\ subGroups organ=adrenal_gland view=H3K4me3_view simpleBiosample=adrenal_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF263CSV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF511URZ ENCSR000DKV Peak bigBed 5 GM12878 CTCF peaks 4 682 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/109d964f-cb47-4cee-9dd3-d4b00bd051b8/ENCFF511URZ.bigBed\ labelFields none\ longLabel GM12878 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF511URZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF308FQH ENCSR000EQK Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 28 years DNase signal 2 682 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/27d7d5e0-5fab-4e64-9918-da18ce8491ab/ENCFF308FQH.bigWig\ color 6,218,147\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 28 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQK Signal\ track wgEncodeReg4Epigenetics_ENCFF308FQH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF360QRL ENCSR622PIH - strand bigWig Right cardiac atrium tissue female adult (59 years) - strand total RNA-seq signal 2 682 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/12995aa5-a07b-45c7-a3c5-51283552f9ad/ENCFF360QRL.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR622PIH - strand\ track wgEncodeReg4RnaSeq_ENCFF360QRL\ type bigWig\ visibility full\ encTfChipPkENCFF259HUS K562 PHF20 narrowPeak Transcription Factor ChIP-seq Peaks of PHF20 in K562 from ENCODE 3 (ENCFF259HUS) 0 682 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF20 in K562 from ENCODE 3 (ENCFF259HUS)\ parent encTfChipPk off\ shortLabel K562 PHF20\ subGroups cellType=K562 factor=PHF20\ track encTfChipPkENCFF259HUS\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_rev Tc:Mcf7ToHrg_00hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse 0 682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_rev Tc:Mcf7ToHrg_00hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse 1 682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep2.CNhs12653.13115-140F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep2_CNhs12653_13115-140F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13115-140F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep2_CNhs12653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13115-140F1\ urlLabel FANTOM5 Details:\ ENCFF700TZZ ENCFF700TZZ bigWig Adrenal gland, female adult (41 years): (3) H3K4me3, ENCFF700TZZ 2 683 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF700TZZ.bw\ color 255,0,0\ longLabel Adrenal gland, female adult (41 years): (3) H3K4me3, ENCFF700TZZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 2.2\ shortLabel ENCFF700TZZ\ subGroups organ=adrenal_gland view=H3K4me3_view simpleBiosample=adrenal_gland-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k4me3\ track ENCFF700TZZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF800WUV ENCSR000DKV Signal bigWig GM12878 CTCF ENCSR000DKV signal 2 683 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/2dfbb750-76b4-4778-b464-23ad36f5ccbd/ENCFF800WUV.bigWig\ color 254,75,173\ longLabel GM12878 CTCF ENCSR000DKV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKV Signal\ track wgEncodeReg4TfChip_ENCFF800WUV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF445ZFX ENCSR000EQM Peak bigBed 5 WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours DNase peak 4 683 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/2a40a1fe-a8e2-4bf8-b0d6-1b40606ef032/ENCFF445ZFX.bigBed\ color 6,218,147\ labelFields none\ longLabel WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQM Peak\ track wgEncodeReg4Epigenetics_ENCFF445ZFX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF850AAB ENCSR629HFE + strand bigWig Psoas muscle tissue female adult (59 years) + strand total RNA-seq signal 2 683 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/e4afa3a8-a441-4d2e-81eb-e6e53b64823d/ENCFF850AAB.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR629HFE + strand\ track wgEncodeReg4RnaSeq_ENCFF850AAB\ type bigWig\ visibility full\ encTfChipPkENCFF657UVA K562 PHF21A narrowPeak Transcription Factor ChIP-seq Peaks of PHF21A in K562 from ENCODE 3 (ENCFF657UVA) 0 683 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF21A in K562 from ENCODE 3 (ENCFF657UVA)\ parent encTfChipPk off\ shortLabel K562 PHF21A\ subGroups cellType=K562 factor=PHF21A\ track encTfChipPkENCFF657UVA\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_fwd Tc:Mcf7ToHrg_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward 0 683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_fwd Tc:Mcf7ToHrg_00hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward 1 683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ ENCFF827GEQ ENCFF827GEQ bigWig Adrenal gland, female adult (53 years): (3) H3K4me3, ENCFF827GEQ 2 684 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF827GEQ.bw\ color 255,0,0\ longLabel Adrenal gland, female adult (53 years): (3) H3K4me3, ENCFF827GEQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 4.2\ shortLabel ENCFF827GEQ\ subGroups organ=adrenal_gland view=H3K4me3_view simpleBiosample=adrenal_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF827GEQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF896BYT ENCSR000DKZ Peak bigBed 5 GM13976 CTCF peaks 4 684 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3a880aeb-f609-4a3e-ac88-12b1bfe7db5a/ENCFF896BYT.bigBed\ labelFields none\ longLabel GM13976 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF896BYT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF682AUG ENCSR000EQM Signal bigWig WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours DNase signal 2 684 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/e7a581ca-d8dc-48ad-a6e9-3e2dd01d8b96/ENCFF682AUG.bigWig\ color 6,218,147\ longLabel WI38 stably expressing RAF1 treated with 20 nM afimoxifene for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQM Signal\ track wgEncodeReg4Epigenetics_ENCFF682AUG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF417SKD ENCSR629HFE - strand bigWig Psoas muscle tissue female adult (59 years) - strand total RNA-seq signal 2 684 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/c2464255-a772-49bd-b6c3-f0f540192f52/ENCFF417SKD.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR629HFE - strand\ track wgEncodeReg4RnaSeq_ENCFF417SKD\ type bigWig\ visibility full\ encTfChipPkENCFF952YDR K562 PHF8 narrowPeak Transcription Factor ChIP-seq Peaks of PHF8 in K562 from ENCODE 3 (ENCFF952YDR) 0 684 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PHF8 in K562 from ENCODE 3 (ENCFF952YDR)\ parent encTfChipPk off\ shortLabel K562 PHF8\ subGroups cellType=K562 factor=PHF8\ track encTfChipPkENCFF952YDR\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_rev Tc:Mcf7ToHrg_00hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse 0 684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_rev Tc:Mcf7ToHrg_00hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse 1 684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr30min%2c%20biol_rep3.CNhs12755.13181-141D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr30min, biol_rep3_CNhs12755_13181-141D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13181-141D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr30minBiolRep3_CNhs12755_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13181-141D4\ urlLabel FANTOM5 Details:\ ENCFF053KMZ ENCFF053KMZ bigWig Adrenal gland, male adult (37 years): (3) H3K4me3, ENCFF053KMZ 2 685 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF053KMZ.bw\ color 255,0,0\ longLabel Adrenal gland, male adult (37 years): (3) H3K4me3, ENCFF053KMZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 5.2\ shortLabel ENCFF053KMZ\ subGroups organ=adrenal_gland view=H3K4me3_view simpleBiosample=adrenal_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF053KMZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF199JKB ENCSR000DKZ Signal bigWig GM13976 CTCF ENCSR000DKZ signal 2 685 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7e3ea8a3-10dd-4163-90bc-e4671175e377/ENCFF199JKB.bigWig\ color 254,75,173\ longLabel GM13976 CTCF ENCSR000DKZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DKZ Signal\ track wgEncodeReg4TfChip_ENCFF199JKB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF172PMU ENCSR000EQN Peak bigBed 5 WI38 stably expressing RAF1 DNase peak 4 685 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/8599dd56-4271-4d49-85d4-de30ef643216/ENCFF172PMU.bigBed\ color 6,218,147\ labelFields none\ longLabel WI38 stably expressing RAF1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQN Peak\ track wgEncodeReg4Epigenetics_ENCFF172PMU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF672VYQ ENCSR630VJN + strand bigWig Transverse colon tissue male adult (54 years) + strand total RNA-seq signal 2 685 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/83571406-230b-4670-91b2-55353dbe3fbb/ENCFF672VYQ.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR630VJN + strand\ track wgEncodeReg4RnaSeq_ENCFF672VYQ\ type bigWig\ visibility full\ encTfChipPkENCFF062VBB K562 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in K562 from ENCODE 3 (ENCFF062VBB) 0 685 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in K562 from ENCODE 3 (ENCFF062VBB)\ parent encTfChipPk off\ shortLabel K562 PKNOX1\ subGroups cellType=K562 factor=PKNOX1\ track encTfChipPkENCFF062VBB\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward 0 685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward 1 685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ ENCFF806YEZ ENCFF806YEZ bigWig K562: (3) H3K4me3, ENCFF806YEZ 2 686 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF806YEZ.bw\ color 255,0,0\ longLabel K562: (3) H3K4me3, ENCFF806YEZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 58.2\ shortLabel ENCFF806YEZ\ subGroups organ=blood view=H3K4me3_view simpleBiosample=K562 biosampleType=cell_line donor=ENCDO000AAD dataType=typeH3k4me3\ track ENCFF806YEZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF528ESQ ENCSR000DLB Peak bigBed 5 GM13977 CTCF peaks 4 686 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0fe47a61-f75c-46ca-b60c-c6daa4650d2b/ENCFF528ESQ.bigBed\ labelFields none\ longLabel GM13977 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF528ESQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF545LWE ENCSR000EQN Signal bigWig WI38 stably expressing RAF1 DNase signal 2 686 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/12/d48c2759-15b1-45e4-82a0-1e600602c45c/ENCFF545LWE.bigWig\ color 6,218,147\ longLabel WI38 stably expressing RAF1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EQN Signal\ track wgEncodeReg4Epigenetics_ENCFF545LWE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF699WAG ENCSR630VJN - strand bigWig Transverse colon tissue male adult (54 years) - strand total RNA-seq signal 2 686 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/2ec955f2-0bb8-4175-87b1-e00c43053f33/ENCFF699WAG.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR630VJN - strand\ track wgEncodeReg4RnaSeq_ENCFF699WAG\ type bigWig\ visibility full\ encTfChipPkENCFF800QDU K562 PML narrowPeak Transcription Factor ChIP-seq Peaks of PML in K562 from ENCODE 3 (ENCFF800QDU) 0 686 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PML in K562 from ENCODE 3 (ENCFF800QDU)\ parent encTfChipPk off\ shortLabel K562 PML\ subGroups cellType=K562 factor=PML\ track encTfChipPkENCFF800QDU\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_rev Tc:Mcf7ToHrg_00hr45minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse 0 686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_rev Tc:Mcf7ToHrg_00hr45minBr1- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse 1 686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep1.CNhs12437.13050-139G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep1_CNhs12437_13050-139G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13050-139G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep1_CNhs12437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13050-139G8\ urlLabel FANTOM5 Details:\ ENCFF280PUF ENCFF280PUF bigWig GM12878: (3) H3K4me3, ENCFF280PUF 2 687 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF280PUF.bw\ color 255,0,0\ longLabel GM12878: (3) H3K4me3, ENCFF280PUF\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 34.2\ shortLabel ENCFF280PUF\ subGroups organ=blood view=H3K4me3_view simpleBiosample=GM12878 biosampleType=cell_line donor=ENCDO000AAK dataType=typeH3k4me3\ track ENCFF280PUF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF233CKI ENCSR000DLB Signal bigWig GM13977 CTCF ENCSR000DLB signal 2 687 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a2440a03-b143-4886-a0a7-8af56410411c/ENCFF233CKI.bigWig\ color 254,75,173\ longLabel GM13977 CTCF ENCSR000DLB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLB Signal\ track wgEncodeReg4TfChip_ENCFF233CKI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF963OMK ENCSR000EWA Peak bigBed 5 K562 H3K4me3 peak 4 687 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/9d304783-00db-459a-a5b0-0da16febc3db/ENCFF963OMK.bigBed\ color 255,0,0\ longLabel K562 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EWA Peak\ track wgEncodeReg4Epigenetics_ENCFF963OMK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF983RQU ENCSR631FXT + strand bigWig T-cell male adult (38 years) + strand total RNA-seq signal 2 687 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/c8fdb5d8-2390-449d-9809-ed750e827121/ENCFF983RQU.bigWig\ color 254,75,173\ longLabel T-cell male adult (38 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR631FXT + strand\ track wgEncodeReg4RnaSeq_ENCFF983RQU\ type bigWig\ visibility full\ encTfChipPkENCFF182YZG K562 POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF182YZG) 0 687 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF182YZG)\ parent encTfChipPk off\ shortLabel K562 POLR2A 1\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF182YZG\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward 0 687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward 1 687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ ENCFF695YII ENCFF695YII bigWig HL-60: (3) H3K4me3, ENCFF695YII 2 688 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF695YII.bw\ color 255,0,0\ longLabel HL-60: (3) H3K4me3, ENCFF695YII\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 56.2\ shortLabel ENCFF695YII\ subGroups organ=blood view=H3K4me3_view simpleBiosample=HL-60 biosampleType=cell_line donor=ENCDO000AAM dataType=typeH3k4me3\ track ENCFF695YII\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF217HWJ ENCSR000DLG Peak bigBed 5 GM20000 CTCF peaks 4 688 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/e8abfba6-b0dd-4872-ab4c-0691adc5a48f/ENCFF217HWJ.bigBed\ labelFields none\ longLabel GM20000 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF217HWJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF806YEZ ENCSR000EWA Signal bigWig K562 H3K4me3 signal 2 688 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/2e62e067-5b7b-49c2-b10f-b9f5c089179a/ENCFF806YEZ.bigWig\ color 255,0,0\ longLabel K562 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EWA Signal\ track wgEncodeReg4Epigenetics_ENCFF806YEZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF693CQZ ENCSR631FXT - strand bigWig T-cell male adult (38 years) - strand total RNA-seq signal 2 688 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/d676cd60-cda9-46d9-b9b0-71319b929e28/ENCFF693CQZ.bigWig\ color 254,75,173\ longLabel T-cell male adult (38 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR631FXT - strand\ track wgEncodeReg4RnaSeq_ENCFF693CQZ\ type bigWig\ visibility full\ encTfChipPkENCFF741JES K562 POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF741JES) 0 688 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF741JES)\ parent encTfChipPk off\ shortLabel K562 POLR2A 2\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF741JES\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_rev Tc:Mcf7ToHrg_00hr45minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse 0 688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_rev Tc:Mcf7ToHrg_00hr45minBr2- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse 1 688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep2.CNhs12654.13116-140F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep2_CNhs12654_13116-140F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13116-140F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep2_CNhs12654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13116-140F2\ urlLabel FANTOM5 Details:\ ENCFF308GJB ENCFF308GJB bigWig DND-41: (3) H3K4me3, ENCFF308GJB 2 689 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF308GJB.bw\ color 255,0,0\ longLabel DND-41: (3) H3K4me3, ENCFF308GJB\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 24.2\ shortLabel ENCFF308GJB\ subGroups organ=blood view=H3K4me3_view simpleBiosample=DND-41 biosampleType=cell_line donor=ENCDO183AAA dataType=typeH3k4me3\ track ENCFF308GJB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF795QXM ENCSR000DLG Signal bigWig GM20000 CTCF ENCSR000DLG signal 2 689 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c2d8052e-31ee-4818-a184-540917ca675a/ENCFF795QXM.bigWig\ color 254,75,173\ longLabel GM20000 CTCF ENCSR000DLG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLG Signal\ track wgEncodeReg4TfChip_ENCFF795QXM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF847JXO ENCSR000EXD Peak bigBed 5 NT2/D1 H3K4me3 peak 4 689 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/130b3b43-546b-43b3-a814-6097294dd9ae/ENCFF847JXO.bigBed\ color 255,0,0\ longLabel NT2/D1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXD Peak\ track wgEncodeReg4Epigenetics_ENCFF847JXO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF374VCP ENCSR631GOR + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 689 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/224c56e4-a2ef-4771-afe0-014d21ccb244/ENCFF374VCP.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR631GOR + strand\ track wgEncodeReg4RnaSeq_ENCFF374VCP\ type bigWig\ visibility full\ encTfChipPkENCFF730DLS K562 POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF730DLS) 0 689 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF730DLS)\ parent encTfChipPk off\ shortLabel K562 POLR2A 3\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF730DLS\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_fwd Tc:Mcf7ToHrg_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward 0 689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_fwd Tc:Mcf7ToHrg_00hr45minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward 1 689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ ENCFF630BQS ENCFF630BQS bigWig OCI-LY7: (3) H3K4me3, ENCFF630BQS 2 690 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF630BQS.bw\ color 255,0,0\ longLabel OCI-LY7: (3) H3K4me3, ENCFF630BQS\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 118.2\ shortLabel ENCFF630BQS\ subGroups organ=blood view=H3K4me3_view simpleBiosample=OCI-LY7 biosampleType=cell_line donor=ENCDO351AAA dataType=typeH3k4me3\ track ENCFF630BQS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF770YBQ ENCSR000DLJ Peak bigBed 5 H1 POLR2A peaks 4 690 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/b9ef6458-56da-466c-bda1-d3ea6a6bcb3b/ENCFF770YBQ.bigBed\ labelFields none\ longLabel H1 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF770YBQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF303ECD ENCSR000EXD Signal bigWig NT2/D1 H3K4me3 signal 2 690 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/7f95d02a-b031-469e-8977-6f2c21df66ae/ENCFF303ECD.bigWig\ color 255,0,0\ longLabel NT2/D1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXD Signal\ track wgEncodeReg4Epigenetics_ENCFF303ECD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF040GCB ENCSR631GOR - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 690 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/c1332d7c-d1eb-44d7-83a5-46c5f67e73e9/ENCFF040GCB.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR631GOR - strand\ track wgEncodeReg4RnaSeq_ENCFF040GCB\ type bigWig\ visibility full\ encTfChipPkENCFF099NYA K562 POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF099NYA) 0 690 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF099NYA)\ parent encTfChipPk off\ shortLabel K562 POLR2A 4\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF099NYA\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_rev Tc:Mcf7ToHrg_00hr45minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse 0 690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_rev Tc:Mcf7ToHrg_00hr45minBr3- bigWig MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse 1 690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2000hr45min%2c%20biol_rep3.CNhs12756.13182-141D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 00hr45min, biol_rep3_CNhs12756_13182-141D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13182-141D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG00hr45minBiolRep3_CNhs12756_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13182-141D5\ urlLabel FANTOM5 Details:\ ENCFF970LMB ENCFF970LMB bigWig MM.1S: (3) H3K4me3, ENCFF970LMB 2 691 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF970LMB.bw\ color 255,0,0\ longLabel MM.1S: (3) H3K4me3, ENCFF970LMB\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 115.2\ shortLabel ENCFF970LMB\ subGroups organ=blood view=H3K4me3_view simpleBiosample=MM_1S biosampleType=cell_line donor=ENCDO697GBW dataType=typeH3k4me3\ track ENCFF970LMB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF415BIV ENCSR000DLJ Signal bigWig H1 POLR2A ENCSR000DLJ signal 2 691 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/06f800ff-3f65-4935-8401-3d25379503b1/ENCFF415BIV.bigWig\ color 118,158,101\ longLabel H1 POLR2A ENCSR000DLJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLJ Signal\ track wgEncodeReg4TfChip_ENCFF415BIV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF399PQW ENCSR000EXI Peak bigBed 5 Panc1 H3K4me3 peak 4 691 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/86434080-9423-4fd2-945d-483e5bccab59/ENCFF399PQW.bigBed\ color 255,0,0\ longLabel Panc1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXI Peak\ track wgEncodeReg4Epigenetics_ENCFF399PQW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF296HLN ENCSR631NUQ + strand bigWig Sciatic nerve tissue female adult (41 years) + strand total RNA-seq signal 2 691 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/6e0b154e-83ee-498f-87ad-e88e54594cc8/ENCFF296HLN.bigWig\ color 160,156,0\ longLabel Sciatic nerve tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR631NUQ + strand\ track wgEncodeReg4RnaSeq_ENCFF296HLN\ type bigWig\ visibility full\ encTfChipPkENCFF881ONC K562 POLR2A 5 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF881ONC) 0 691 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF881ONC)\ parent encTfChipPk off\ shortLabel K562 POLR2A 5\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF881ONC\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward 0 691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward 1 691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ ENCFF587XGD ENCFF587XGD bigWig CD14-positive monocyte, female: (3) H3K4me3, ENCFF587XGD 2 692 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF587XGD.bw\ color 255,0,0\ longLabel CD14-positive monocyte, female: (3) H3K4me3, ENCFF587XGD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 20.2\ shortLabel ENCFF587XGD\ subGroups organ=blood view=H3K4me3_view simpleBiosample=CD14-positive_monocyte-_female biosampleType=primary_cell donor=ENCDO265AAA dataType=typeH3k4me3\ track ENCFF587XGD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF230QSV ENCSR000DLK Peak bigBed 5 H1 CTCF peaks 4 692 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/16e154cd-a44b-45ea-b987-f2770aff541a/ENCFF230QSV.bigBed\ labelFields none\ longLabel H1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF230QSV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF756NMQ ENCSR000EXI Signal bigWig Panc1 H3K4me3 signal 2 692 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/d922c767-3a40-4b6c-b1b3-ee74b21fe11a/ENCFF756NMQ.bigWig\ color 255,0,0\ longLabel Panc1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXI Signal\ track wgEncodeReg4Epigenetics_ENCFF756NMQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF404ODY ENCSR631NUQ - strand bigWig Sciatic nerve tissue female adult (41 years) - strand total RNA-seq signal 2 692 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/6a8bafb9-a83c-412f-becc-7e24d48d1a6e/ENCFF404ODY.bigWig\ color 160,156,0\ longLabel Sciatic nerve tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR631NUQ - strand\ track wgEncodeReg4RnaSeq_ENCFF404ODY\ type bigWig\ visibility full\ encTfChipPkENCFF668VIK K562 POLR2A 6 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF668VIK) 0 692 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF668VIK)\ parent encTfChipPk off\ shortLabel K562 POLR2A 6\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF668VIK\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_rev Tc:Mcf7ToHrg_01hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse 0 692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_rev Tc:Mcf7ToHrg_01hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse 1 692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep1.CNhs12438.13051-139G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep1_CNhs12438_13051-139G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13051-139G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep1_CNhs12438_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13051-139G9\ urlLabel FANTOM5 Details:\ ENCFF559ALK ENCFF559ALK bigWig Brain microvascular endothelial cell: (3) H3K4me3, ENCFF559ALK 2 693 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF559ALK.bw\ color 255,0,0\ longLabel Brain microvascular endothelial cell: (3) H3K4me3, ENCFF559ALK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 16.2\ shortLabel ENCFF559ALK\ subGroups organ=blood_vessel view=H3K4me3_view simpleBiosample=brain_microvascular_endothelial_cell biosampleType=primary_cell donor=ENCDO227AAA dataType=typeH3k4me3\ track ENCFF559ALK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF648BTZ ENCSR000DLK Signal bigWig H1 CTCF ENCSR000DLK signal 2 693 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/97672f73-5330-4a2c-915d-d33f791c1085/ENCFF648BTZ.bigWig\ color 118,158,101\ longLabel H1 CTCF ENCSR000DLK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLK Signal\ track wgEncodeReg4TfChip_ENCFF648BTZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF587YOV ENCSR000EXK Peak bigBed 5 Panc1 H3K27ac peak 4 693 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/871b86a2-7815-458d-94f4-aa26028e859a/ENCFF587YOV.bigBed\ color 181,145,0\ longLabel Panc1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXK Peak\ track wgEncodeReg4Epigenetics_ENCFF587YOV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF482BDQ ENCSR634JQK + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 693 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/2e235966-461b-4098-9b1e-81ee25086545/ENCFF482BDQ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR634JQK + strand\ track wgEncodeReg4RnaSeq_ENCFF482BDQ\ type bigWig\ visibility full\ encTfChipPkENCFF285MBX K562 POLR2A 7 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF285MBX) 0 693 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in K562 from ENCODE 3 (ENCFF285MBX)\ parent encTfChipPk off\ shortLabel K562 POLR2A 7\ subGroups cellType=K562 factor=POLR2A\ track encTfChipPkENCFF285MBX\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward 0 693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward 1 693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ ENCFF935CPK ENCFF935CPK bigWig Ascending aorta, female adult (51 years): (3) H3K4me3, ENCFF935CPK 2 694 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF935CPK.bw\ color 255,0,0\ longLabel Ascending aorta, female adult (51 years): (3) H3K4me3, ENCFF935CPK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 8.2\ shortLabel ENCFF935CPK\ subGroups organ=blood_vessel view=H3K4me3_view simpleBiosample=ascending_aorta-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF935CPK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF455YYQ ENCSR000DLM Peak bigBed 5 HeLa-S3 POLR2A peaks 4 694 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/24a54c36-e093-4c02-9db8-015ad129c9a2/ENCFF455YYQ.bigBed\ labelFields none\ longLabel HeLa-S3 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF455YYQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF493AZX ENCSR000EXK Signal bigWig Panc1 H3K27ac signal 2 694 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/f8fba10b-4228-4105-ac1c-dde6643b9923/ENCFF493AZX.bigWig\ color 181,145,0\ longLabel Panc1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXK Signal\ track wgEncodeReg4Epigenetics_ENCFF493AZX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF803FBL ENCSR634JQK - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 694 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/a114a8b2-05bb-4fef-9a8e-d3d24d781739/ENCFF803FBL.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR634JQK - strand\ track wgEncodeReg4RnaSeq_ENCFF803FBL\ type bigWig\ visibility full\ encTfChipPkENCFF283CUY K562 POLR2G narrowPeak Transcription Factor ChIP-seq Peaks of POLR2G in K562 from ENCODE 3 (ENCFF283CUY) 0 694 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of POLR2G in K562 from ENCODE 3 (ENCFF283CUY)\ parent encTfChipPk off\ shortLabel K562 POLR2G\ subGroups cellType=K562 factor=POLR2G\ track encTfChipPkENCFF283CUY\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_rev Tc:Mcf7ToHrg_01hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse 0 694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_rev Tc:Mcf7ToHrg_01hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse 1 694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep2.CNhs12655.13117-140F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep2_CNhs12655_13117-140F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13117-140F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep2_CNhs12655_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13117-140F3\ urlLabel FANTOM5 Details:\ ENCFF132YWJ ENCFF132YWJ bigWig Ascending aorta, female adult (53 years): (3) H3K4me3, ENCFF132YWJ 2 695 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF132YWJ.bw\ color 255,0,0\ longLabel Ascending aorta, female adult (53 years): (3) H3K4me3, ENCFF132YWJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 9.2\ shortLabel ENCFF132YWJ\ subGroups organ=blood_vessel view=H3K4me3_view simpleBiosample=ascending_aorta-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF132YWJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF193YCT ENCSR000DLM Signal bigWig HeLa-S3 POLR2A ENCSR000DLM signal 2 695 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/fafaae98-8408-4f27-8f30-f4bfbcbc5167/ENCFF193YCT.bigWig\ color 186,111,165\ longLabel HeLa-S3 POLR2A ENCSR000DLM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLM Signal\ track wgEncodeReg4TfChip_ENCFF193YCT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF018FRN ENCSR000EXT Peak bigBed 5 Mononuclear cell male H3K4me3 peak 4 695 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/647b9cca-c422-4c2b-a88d-784e344c16b9/ENCFF018FRN.bigBed\ color 255,0,0\ longLabel Mononuclear cell male H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXT Peak\ track wgEncodeReg4Epigenetics_ENCFF018FRN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF114DWJ ENCSR636LEU + strand bigWig HFFc6 + strand total RNA-seq signal 2 695 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/6a0d5e25-b744-4f91-8786-e015812f5dca/ENCFF114DWJ.bigWig\ color 20,74,159\ longLabel HFFc6 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR636LEU + strand\ track wgEncodeReg4RnaSeq_ENCFF114DWJ\ type bigWig\ visibility full\ encTfChipPkENCFF600HPZ K562 PRDM10 narrowPeak Transcription Factor ChIP-seq Peaks of PRDM10 in K562 from ENCODE 3 (ENCFF600HPZ) 0 695 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PRDM10 in K562 from ENCODE 3 (ENCFF600HPZ)\ parent encTfChipPk off\ shortLabel K562 PRDM10\ subGroups cellType=K562 factor=PRDM10\ track encTfChipPkENCFF600HPZ\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_fwd Tc:Mcf7ToHrg_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward 0 695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_fwd Tc:Mcf7ToHrg_01hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward 1 695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ ENCFF811RQX ENCFF811RQX bigWig Coronary artery, female adult (53 years): (3) H3K4me3, ENCFF811RQX 2 696 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF811RQX.bw\ color 255,0,0\ longLabel Coronary artery, female adult (53 years): (3) H3K4me3, ENCFF811RQX\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 23.2\ shortLabel ENCFF811RQX\ subGroups organ=blood_vessel view=H3K4me3_view simpleBiosample=coronary_artery-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF811RQX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF369WIV ENCSR000DLN Peak bigBed 5 HeLa-S3 MYC peaks 4 696 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/2438b3b1-317e-4eed-ac7c-3da0b959e6a7/ENCFF369WIV.bigBed\ labelFields none\ longLabel HeLa-S3 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF369WIV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF175KKW ENCSR000EXT Signal bigWig Mononuclear cell male H3K4me3 signal 2 696 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/077e373c-5cdc-442b-88ed-9c72dcd19649/ENCFF175KKW.bigWig\ color 255,0,0\ longLabel Mononuclear cell male H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000EXT Signal\ track wgEncodeReg4Epigenetics_ENCFF175KKW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF894GCH ENCSR636LEU - strand bigWig HFFc6 - strand total RNA-seq signal 2 696 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/380dfa61-75fc-4da2-8885-fb2f5abec69a/ENCFF894GCH.bigWig\ color 20,74,159\ longLabel HFFc6 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR636LEU - strand\ track wgEncodeReg4RnaSeq_ENCFF894GCH\ type bigWig\ visibility full\ encTfChipPkENCFF417RQZ K562 PRPF4 narrowPeak Transcription Factor ChIP-seq Peaks of PRPF4 in K562 from ENCODE 3 (ENCFF417RQZ) 0 696 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PRPF4 in K562 from ENCODE 3 (ENCFF417RQZ)\ parent encTfChipPk off\ shortLabel K562 PRPF4\ subGroups cellType=K562 factor=PRPF4\ track encTfChipPkENCFF417RQZ\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_rev Tc:Mcf7ToHrg_01hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse 0 696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_rev Tc:Mcf7ToHrg_01hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse 1 696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr00min%2c%20biol_rep3.CNhs12757.13183-141D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr00min, biol_rep3_CNhs12757_13183-141D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13183-141D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr00minBiolRep3_CNhs12757_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13183-141D6\ urlLabel FANTOM5 Details:\ ENCFF696UEY ENCFF696UEY bigWig Thoracic aorta, male adult (37 years): (3) H3K4me3, ENCFF696UEY 2 697 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF696UEY.bw\ color 255,0,0\ longLabel Thoracic aorta, male adult (37 years): (3) H3K4me3, ENCFF696UEY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 149.2\ shortLabel ENCFF696UEY\ subGroups organ=blood_vessel view=H3K4me3_view simpleBiosample=thoracic_aorta-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF696UEY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF545BFM ENCSR000DLN Signal bigWig HeLa-S3 MYC ENCSR000DLN signal 2 697 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/50321144-fcf1-485e-a29b-1c96aab8b858/ENCFF545BFM.bigWig\ color 186,111,165\ longLabel HeLa-S3 MYC ENCSR000DLN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLN Signal\ track wgEncodeReg4TfChip_ENCFF545BFM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF081NLO ENCSR000FCH Peak bigBed 5 HEK293 H3K27ac peak 4 697 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/5975e703-5c9a-4778-a6e4-07564af7a456/ENCFF081NLO.bigBed\ color 181,145,0\ longLabel HEK293 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FCH Peak\ track wgEncodeReg4Epigenetics_ENCFF081NLO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF556SUJ ENCSR636QDK + strand bigWig Esophagus mucosa tissue female adult (47 years) + strand total RNA-seq signal 2 697 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/25f0c57d-b2f4-42c5-9ddb-159531f18804/ENCFF556SUJ.bigWig\ color 159,131,100\ longLabel Esophagus mucosa tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR636QDK + strand\ track wgEncodeReg4RnaSeq_ENCFF556SUJ\ type bigWig\ visibility full\ encTfChipPkENCFF917HXV K562 PTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of PTBP1 in K562 from ENCODE 3 (ENCFF917HXV) 0 697 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PTBP1 in K562 from ENCODE 3 (ENCFF917HXV)\ parent encTfChipPk off\ shortLabel K562 PTBP1\ subGroups cellType=K562 factor=PTBP1\ track encTfChipPkENCFF917HXV\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward 0 697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward 1 697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ ENCFF901QWB ENCFF901QWB bigWig Tibial artery, male adult (37 years): (3) H3K4me3, ENCFF901QWB 2 698 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF901QWB.bw\ color 255,0,0\ longLabel Tibial artery, male adult (37 years): (3) H3K4me3, ENCFF901QWB\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 154.2\ shortLabel ENCFF901QWB\ subGroups organ=blood_vessel view=H3K4me3_view simpleBiosample=tibial_artery-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF901QWB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF565UFR ENCSR000DLO Peak bigBed 5 HeLa-S3 CTCF peaks 4 698 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/921cbb3c-df55-4864-8b6e-fde7a57f1806/ENCFF565UFR.bigBed\ labelFields none\ longLabel HeLa-S3 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF565UFR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF885SUR ENCSR000FCH Signal bigWig HEK293 H3K27ac signal 2 698 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/d4ab1a71-bda2-4bf8-813e-ebd7406b5dcc/ENCFF885SUR.bigWig\ color 181,145,0\ longLabel HEK293 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FCH Signal\ track wgEncodeReg4Epigenetics_ENCFF885SUR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF597FZD ENCSR636QDK - strand bigWig Esophagus mucosa tissue female adult (47 years) - strand total RNA-seq signal 2 698 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/0d7cff38-6b6f-4799-a707-cbd9b22c7652/ENCFF597FZD.bigWig\ color 159,131,100\ longLabel Esophagus mucosa tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR636QDK - strand\ track wgEncodeReg4RnaSeq_ENCFF597FZD\ type bigWig\ visibility full\ encTfChipPkENCFF442XXV K562 PYGO2 narrowPeak Transcription Factor ChIP-seq Peaks of PYGO2 in K562 from ENCODE 3 (ENCFF442XXV) 0 698 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of PYGO2 in K562 from ENCODE 3 (ENCFF442XXV)\ parent encTfChipPk off\ shortLabel K562 PYGO2\ subGroups cellType=K562 factor=PYGO2\ track encTfChipPkENCFF442XXV\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_rev Tc:Mcf7ToHrg_01hr20minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse 0 698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_rev Tc:Mcf7ToHrg_01hr20minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse 1 698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep1.CNhs12439.13052-139H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep1_CNhs12439_13052-139H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13052-139H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep1_CNhs12439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13052-139H1\ urlLabel FANTOM5 Details:\ ENCFF582GHH ENCFF582GHH bigWig Osteocyte, female embryo (5 days): (3) H3K4me3, ENCFF582GHH 2 699 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF582GHH.bw\ color 255,0,0\ longLabel Osteocyte, female embryo (5 days): (3) H3K4me3, ENCFF582GHH\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 119.2\ shortLabel ENCFF582GHH\ subGroups organ=bone view=H3K4me3_view simpleBiosample=osteocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF582GHH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF684CXT ENCSR000DLO Signal bigWig HeLa-S3 CTCF ENCSR000DLO signal 2 699 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/025cf918-250d-4a68-992c-3da6ad2fcf18/ENCFF684CXT.bigWig\ color 186,111,165\ longLabel HeLa-S3 CTCF ENCSR000DLO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLO Signal\ track wgEncodeReg4TfChip_ENCFF684CXT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF907BDL ENCSR000FCL Peak bigBed 5 GM08714 H3K4me3 peak 4 699 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/4368bbbb-802a-4c25-8cf4-4089672cc7cb/ENCFF907BDL.bigBed\ color 255,0,0\ longLabel GM08714 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FCL Peak\ track wgEncodeReg4Epigenetics_ENCFF907BDL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF560BUY ENCSR641XXD + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 699 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/15630864-d3df-4453-93ba-5551ed23414a/ENCFF560BUY.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR641XXD + strand\ track wgEncodeReg4RnaSeq_ENCFF560BUY\ type bigWig\ visibility full\ encTfChipPkENCFF740OPF K562 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in K562 from ENCODE 3 (ENCFF740OPF) 0 699 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in K562 from ENCODE 3 (ENCFF740OPF)\ parent encTfChipPk off\ shortLabel K562 RAD51\ subGroups cellType=K562 factor=RAD51\ track encTfChipPkENCFF740OPF\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward 0 699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward 1 699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ ENCFF684UUJ ENCFF684UUJ bigWig NCI-H929: (3) H3K4me3, ENCFF684UUJ 2 700 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF684UUJ.bw\ color 255,0,0\ longLabel NCI-H929: (3) H3K4me3, ENCFF684UUJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 116.2\ shortLabel ENCFF684UUJ\ subGroups organ=bone_marrow view=H3K4me3_view simpleBiosample=NCI-H929 biosampleType=cell_line donor=ENCDO220OYR dataType=typeH3k4me3\ track ENCFF684UUJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF252NAR ENCSR000DLQ Peak bigBed 5 HepG2 POLR2A peaks 4 700 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/79b02300-5d06-4bd1-91ae-148561825165/ENCFF252NAR.bigBed\ labelFields none\ longLabel HepG2 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF252NAR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF725VLT ENCSR000FCL Signal bigWig GM08714 H3K4me3 signal 2 700 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/28b7bad7-ae38-4581-86d5-71d324a20288/ENCFF725VLT.bigWig\ color 255,0,0\ longLabel GM08714 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FCL Signal\ track wgEncodeReg4Epigenetics_ENCFF725VLT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF160YBR ENCSR641XXD - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 700 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/90b54d66-75c4-4858-a4fa-5988c0414eac/ENCFF160YBR.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR641XXD - strand\ track wgEncodeReg4RnaSeq_ENCFF160YBR\ type bigWig\ visibility full\ encTfChipPkENCFF328QZM K562 RB1 narrowPeak Transcription Factor ChIP-seq Peaks of RB1 in K562 from ENCODE 3 (ENCFF328QZM) 0 700 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RB1 in K562 from ENCODE 3 (ENCFF328QZM)\ parent encTfChipPk off\ shortLabel K562 RB1\ subGroups cellType=K562 factor=RB1\ track encTfChipPkENCFF328QZM\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_rev Tc:Mcf7ToHrg_01hr20minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse 0 700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_rev Tc:Mcf7ToHrg_01hr20minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse 1 700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep2.CNhs12656.13118-140F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep2_CNhs12656_13118-140F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13118-140F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep2_CNhs12656_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13118-140F4\ urlLabel FANTOM5 Details:\ ENCFF651WOM ENCFF651WOM bigWig SK-N-SH: (3) H3K4me3, ENCFF651WOM 2 701 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF651WOM.bw\ color 255,0,0\ longLabel SK-N-SH: (3) H3K4me3, ENCFF651WOM\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 138.2\ shortLabel ENCFF651WOM\ subGroups organ=brain view=H3K4me3_view simpleBiosample=SK-N-SH biosampleType=cell_line donor=ENCDO000ABD dataType=typeH3k4me3\ track ENCFF651WOM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF323HAZ ENCSR000DLQ Signal bigWig HepG2 POLR2A ENCSR000DLQ signal 2 701 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/4cafb661-318a-4e59-80f9-6f1ae1747f95/ENCFF323HAZ.bigWig\ color 137,152,82\ longLabel HepG2 POLR2A ENCSR000DLQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLQ Signal\ track wgEncodeReg4TfChip_ENCFF323HAZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF685CLU ENCSR000FCS Peak bigBed 5 SK-N-SH H3K4me3 peak 4 701 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/839689ee-60a9-49f1-9575-1e11bb1c1cff/ENCFF685CLU.bigBed\ color 255,0,0\ longLabel SK-N-SH H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FCS Peak\ track wgEncodeReg4Epigenetics_ENCFF685CLU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF791SUJ ENCSR642FZN + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 701 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/ef5f32aa-57d7-4592-91cc-be61c655ba81/ENCFF791SUJ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR642FZN + strand\ track wgEncodeReg4RnaSeq_ENCFF791SUJ\ type bigWig\ visibility full\ encTfChipPkENCFF232ASB K562 RBFOX2 narrowPeak Transcription Factor ChIP-seq Peaks of RBFOX2 in K562 from ENCODE 3 (ENCFF232ASB) 0 701 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBFOX2 in K562 from ENCODE 3 (ENCFF232ASB)\ parent encTfChipPk off\ shortLabel K562 RBFOX2\ subGroups cellType=K562 factor=RBFOX2\ track encTfChipPkENCFF232ASB\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_fwd Tc:Mcf7ToHrg_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward 0 701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_fwd Tc:Mcf7ToHrg_01hr20minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward 1 701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ ENCFF835JIA ENCFF835JIA bigWig Neural progenitor cell, female embryo (5 days): (3) H3K4me3, ENCFF835JIA 2 702 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF835JIA.bw\ color 255,0,0\ longLabel Neural progenitor cell, female embryo (5 days): (3) H3K4me3, ENCFF835JIA\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 117.2\ shortLabel ENCFF835JIA\ subGroups organ=brain view=H3K4me3_view simpleBiosample=neural_progenitor_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF835JIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF056MEM ENCSR000DLR Peak bigBed 5 HepG2 MYC peaks 4 702 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7c1efe66-bf41-41d6-a3b5-e146418eadb0/ENCFF056MEM.bigBed\ labelFields none\ longLabel HepG2 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF056MEM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF651WOM ENCSR000FCS Signal bigWig SK-N-SH H3K4me3 signal 2 702 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/29/34b17cb4-d8f1-4e2a-8ef9-9669580f421a/ENCFF651WOM.bigWig\ color 255,0,0\ longLabel SK-N-SH H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FCS Signal\ track wgEncodeReg4Epigenetics_ENCFF651WOM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF004CUF ENCSR642FZN - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 702 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/353b336b-8e04-4dd5-8ea4-78485f0409bc/ENCFF004CUF.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR642FZN - strand\ track wgEncodeReg4RnaSeq_ENCFF004CUF\ type bigWig\ visibility full\ encTfChipPkENCFF320YOI K562 RBM14 narrowPeak Transcription Factor ChIP-seq Peaks of RBM14 in K562 from ENCODE 3 (ENCFF320YOI) 0 702 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM14 in K562 from ENCODE 3 (ENCFF320YOI)\ parent encTfChipPk off\ shortLabel K562 RBM14\ subGroups cellType=K562 factor=RBM14\ track encTfChipPkENCFF320YOI\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_rev Tc:Mcf7ToHrg_01hr20minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse 0 702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_rev Tc:Mcf7ToHrg_01hr20minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse 1 702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr20min%2c%20biol_rep3.CNhs12758.13184-141D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr20min, biol_rep3_CNhs12758_13184-141D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13184-141D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr20minBiolRep3_CNhs12758_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13184-141D7\ urlLabel FANTOM5 Details:\ ENCFF153BJG ENCFF153BJG bigWig Astrocyte, male adult (53 years): (3) H3K4me3, ENCFF153BJG 2 703 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF153BJG.bw\ color 255,0,0\ longLabel Astrocyte, male adult (53 years): (3) H3K4me3, ENCFF153BJG\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 11.2\ shortLabel ENCFF153BJG\ subGroups organ=brain view=H3K4me3_view simpleBiosample=astrocyte-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k4me3\ track ENCFF153BJG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF411YIG ENCSR000DLR Signal bigWig HepG2 MYC ENCSR000DLR signal 2 703 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/43bd7caa-7675-411d-b3f2-c153f0ac697a/ENCFF411YIG.bigWig\ color 137,152,82\ longLabel HepG2 MYC ENCSR000DLR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLR Signal\ track wgEncodeReg4TfChip_ENCFF411YIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF220CPE ENCSR000FDI Peak bigBed 5 HT1080 DNase peak 4 703 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/a7499645-343f-4b64-94e8-daa3125d4669/ENCFF220CPE.bigBed\ color 6,218,147\ labelFields none\ longLabel HT1080 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FDI Peak\ track wgEncodeReg4Epigenetics_ENCFF220CPE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF889JRS ENCSR645TCG + strand bigWig Omental fat pad tissue female adult (53 years) + strand total RNA-seq signal 2 703 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/15/bc46242c-757b-4d05-83e7-95d84b10414a/ENCFF889JRS.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR645TCG + strand\ track wgEncodeReg4RnaSeq_ENCFF889JRS\ type bigWig\ visibility full\ encTfChipPkENCFF563WDZ K562 RBM15 narrowPeak Transcription Factor ChIP-seq Peaks of RBM15 in K562 from ENCODE 3 (ENCFF563WDZ) 0 703 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM15 in K562 from ENCODE 3 (ENCFF563WDZ)\ parent encTfChipPk off\ shortLabel K562 RBM15\ subGroups cellType=K562 factor=RBM15\ track encTfChipPkENCFF563WDZ\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward 0 703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward 1 703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ ENCFF346LEZ ENCFF346LEZ bigWig Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (3) H3K4me3, ENCFF346LEZ 2 704 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF346LEZ.bw\ color 255,0,0\ longLabel Glutamatergic neuron, male adult (53 years) male adult (53 years) nuclear fraction: (3) H3K4me3, ENCFF346LEZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 33.2\ shortLabel ENCFF346LEZ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=glutamatergic_neuron-_male_adult__53_years__male_adult__53_years__nuclear_fraction biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k4me3\ track ENCFF346LEZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF668CTD ENCSR000DLS Peak bigBed 5 HepG2 CTCF peaks 4 704 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/1a1af14b-653f-447c-8dfc-e929bbd2c540/ENCFF668CTD.bigBed\ labelFields none\ longLabel HepG2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF668CTD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF416NBF ENCSR000FDI Signal bigWig HT1080 DNase signal 2 704 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/2ea276ca-36c4-432c-8b8e-bf000299f651/ENCFF416NBF.bigWig\ color 6,218,147\ longLabel HT1080 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FDI Signal\ track wgEncodeReg4Epigenetics_ENCFF416NBF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF890ZEY ENCSR645TCG - strand bigWig Omental fat pad tissue female adult (53 years) - strand total RNA-seq signal 2 704 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/15/624a2ad8-b2e9-4bdb-90ec-437924fd05d3/ENCFF890ZEY.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR645TCG - strand\ track wgEncodeReg4RnaSeq_ENCFF890ZEY\ type bigWig\ visibility full\ encTfChipPkENCFF056OIG K562 RBM17 narrowPeak Transcription Factor ChIP-seq Peaks of RBM17 in K562 from ENCODE 3 (ENCFF056OIG) 0 704 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM17 in K562 from ENCODE 3 (ENCFF056OIG)\ parent encTfChipPk off\ shortLabel K562 RBM17\ subGroups cellType=K562 factor=RBM17\ track encTfChipPkENCFF056OIG\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_rev Tc:Mcf7ToHrg_01hr40minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse 0 704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_rev Tc:Mcf7ToHrg_01hr40minBr1- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse 1 704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep1.CNhs12440.13053-139H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep1_CNhs12440_13053-139H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13053-139H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep1_CNhs12440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13053-139H2\ urlLabel FANTOM5 Details:\ ENCFF768NPJ ENCFF768NPJ bigWig Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (3) H3K4me3, ENCFF768NPJ 2 705 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF768NPJ.bw\ color 255,0,0\ longLabel Bipolar neuron (treated), male adult (53 years) treated with 0.5 μg/mL doxycycline hyclate for 4 days: (3) H3K4me3, ENCFF768NPJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 12.2\ shortLabel ENCFF768NPJ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=bipolar_neuron__treated_-_male_adult__53_years__treated_with_0_5_ug_mL_doxycycline_hyclate_for_4_days biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k4me3\ track ENCFF768NPJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF579BUC ENCSR000DLS Signal bigWig HepG2 CTCF ENCSR000DLS signal 2 705 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/81655354-6a08-4ccd-9221-cfc20b4c6f4d/ENCFF579BUC.bigWig\ color 137,152,82\ longLabel HepG2 CTCF ENCSR000DLS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLS Signal\ track wgEncodeReg4TfChip_ENCFF579BUC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF124YLW ENCSR000FEK Peak bigBed 5 SK-MEL-5 DNase peak 4 705 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/5a529e73-6980-4f5e-9c93-050590696c65/ENCFF124YLW.bigBed\ color 6,218,147\ labelFields none\ longLabel SK-MEL-5 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FEK Peak\ track wgEncodeReg4Epigenetics_ENCFF124YLW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF857GII ENCSR648JOK + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 705 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/78f29b14-9b2f-4ed7-b317-35f0c5c3c653/ENCFF857GII.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648JOK + strand\ track wgEncodeReg4RnaSeq_ENCFF857GII\ type bigWig\ visibility full\ encTfChipPkENCFF420IBN K562 RBM22 narrowPeak Transcription Factor ChIP-seq Peaks of RBM22 in K562 from ENCODE 3 (ENCFF420IBN) 0 705 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM22 in K562 from ENCODE 3 (ENCFF420IBN)\ parent encTfChipPk off\ shortLabel K562 RBM22\ subGroups cellType=K562 factor=RBM22\ track encTfChipPkENCFF420IBN\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward 0 705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward 1 705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ ENCFF577BWJ ENCFF577BWJ bigWig Astrocyte: (3) H3K4me3, ENCFF577BWJ 2 706 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF577BWJ.bw\ color 255,0,0\ longLabel Astrocyte: (3) H3K4me3, ENCFF577BWJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 10.2\ shortLabel ENCFF577BWJ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=astrocyte biosampleType=primary_cell donor=ENCDO916IIE dataType=typeH3k4me3\ track ENCFF577BWJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF537XOZ ENCSR000DLU Peak bigBed 5 Endothelial cell of umbilical vein newborn MYC peaks 4 706 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c398eb77-c64e-4967-8785-863cd2efc383/ENCFF537XOZ.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF537XOZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF627WEJ ENCSR000FEK Signal bigWig SK-MEL-5 DNase signal 2 706 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/fb94c19e-8e72-4117-bb08-454835c2c810/ENCFF627WEJ.bigWig\ color 6,218,147\ longLabel SK-MEL-5 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FEK Signal\ track wgEncodeReg4Epigenetics_ENCFF627WEJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF835ZBE ENCSR648JOK - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 706 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/d846ac3c-9a25-4b8b-b549-d837291beb0b/ENCFF835ZBE.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648JOK - strand\ track wgEncodeReg4RnaSeq_ENCFF835ZBE\ type bigWig\ visibility full\ encTfChipPkENCFF102XVH K562 RBM25 narrowPeak Transcription Factor ChIP-seq Peaks of RBM25 in K562 from ENCODE 3 (ENCFF102XVH) 0 706 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM25 in K562 from ENCODE 3 (ENCFF102XVH)\ parent encTfChipPk off\ shortLabel K562 RBM25\ subGroups cellType=K562 factor=RBM25\ track encTfChipPkENCFF102XVH\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_rev Tc:Mcf7ToHrg_01hr40minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse 0 706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_rev Tc:Mcf7ToHrg_01hr40minBr2- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse 1 706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep2.CNhs12657.13119-140F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep2_CNhs12657_13119-140F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13119-140F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep2_CNhs12657_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13119-140F5\ urlLabel FANTOM5 Details:\ ENCFF679AWS ENCFF679AWS bigWig Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF679AWS 2 707 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF679AWS.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF679AWS\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 106.2\ shortLabel ENCFF679AWS\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO006DAA dataType=typeH3k4me3\ track ENCFF679AWS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF395PNZ ENCSR000DLU Signal bigWig Endothelial cell of umbilical vein newborn MYC ENCSR000DLU signal 2 707 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/db27e681-b749-40a3-b3c1-d54ab8b3a1fd/ENCFF395PNZ.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn MYC ENCSR000DLU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLU Signal\ track wgEncodeReg4TfChip_ENCFF395PNZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF226LGM ENCSR000FJH Peak bigBed 5 NCI-H460 DNase peak 4 707 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/e7bc4f0e-81e6-4cf5-98c6-fedae3326bfa/ENCFF226LGM.bigBed\ color 6,218,147\ labelFields none\ longLabel NCI-H460 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FJH Peak\ track wgEncodeReg4Epigenetics_ENCFF226LGM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF702XYL ENCSR648KDM + strand bigWig PC-3 + strand total RNA-seq signal 2 707 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/70f35b01-0fbe-42a0-9e5c-16db52ad3752/ENCFF702XYL.bigWig\ color 140,140,140\ longLabel PC-3 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648KDM + strand\ track wgEncodeReg4RnaSeq_ENCFF702XYL\ type bigWig\ visibility full\ encTfChipPkENCFF670ILH K562 RBM34 narrowPeak Transcription Factor ChIP-seq Peaks of RBM34 in K562 from ENCODE 3 (ENCFF670ILH) 0 707 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM34 in K562 from ENCODE 3 (ENCFF670ILH)\ parent encTfChipPk off\ shortLabel K562 RBM34\ subGroups cellType=K562 factor=RBM34\ track encTfChipPkENCFF670ILH\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_fwd Tc:Mcf7ToHrg_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward 0 707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_fwd Tc:Mcf7ToHrg_01hr40minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward 1 707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ ENCFF436OWL ENCFF436OWL bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF436OWL 2 708 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF436OWL.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF436OWL\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 86.2\ shortLabel ENCFF436OWL\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO033BMB dataType=typeH3k4me3\ track ENCFF436OWL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF131DWO ENCSR000DLV Peak bigBed 5 Endothelial cell of umbilical vein newborn POLR2A peaks 4 708 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5868a409-0d54-4a17-bb85-28e54631579f/ENCFF131DWO.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF131DWO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF227KZN ENCSR000FJH Signal bigWig NCI-H460 DNase signal 2 708 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/2bba6298-e563-4ab2-8893-ca8a4dfacc8b/ENCFF227KZN.bigWig\ color 6,218,147\ longLabel NCI-H460 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FJH Signal\ track wgEncodeReg4Epigenetics_ENCFF227KZN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF345VPP ENCSR648KDM - strand bigWig PC-3 - strand total RNA-seq signal 2 708 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/ea5cebc9-aaa7-411c-8a13-349316be60bc/ENCFF345VPP.bigWig\ color 140,140,140\ longLabel PC-3 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648KDM - strand\ track wgEncodeReg4RnaSeq_ENCFF345VPP\ type bigWig\ visibility full\ encTfChipPkENCFF503DIK K562 RBM39 narrowPeak Transcription Factor ChIP-seq Peaks of RBM39 in K562 from ENCODE 3 (ENCFF503DIK) 0 708 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RBM39 in K562 from ENCODE 3 (ENCFF503DIK)\ parent encTfChipPk off\ shortLabel K562 RBM39\ subGroups cellType=K562 factor=RBM39\ track encTfChipPkENCFF503DIK\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_rev Tc:Mcf7ToHrg_01hr40minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse 0 708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_rev Tc:Mcf7ToHrg_01hr40minBr3- bigWig MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse 1 708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2001hr40min%2c%20biol_rep3.CNhs12759.13185-141D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 01hr40min, biol_rep3_CNhs12759_13185-141D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13185-141D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG01hr40minBiolRep3_CNhs12759_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13185-141D8\ urlLabel FANTOM5 Details:\ ENCFF563YFA ENCFF563YFA bigWig Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (3) H3K4me3, ENCFF563YFA 2 709 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF563YFA.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (88 years) with Alzheimers disease: (3) H3K4me3, ENCFF563YFA\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 71.2\ shortLabel ENCFF563YFA\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__88_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO070VNS dataType=typeH3k4me3\ track ENCFF563YFA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF221KHO ENCSR000DLV Signal bigWig Endothelial cell of umbilical vein newborn POLR2A ENCSR000DLV signal 2 709 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a27c846f-9356-490e-8867-df562cf8a1cf/ENCFF221KHO.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn POLR2A ENCSR000DLV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLV Signal\ track wgEncodeReg4TfChip_ENCFF221KHO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF606FJE ENCSR000FJL Peak bigBed 5 SK-N-DZ treated with dimethyl sulfoxide for 72 hours DNase peak 4 709 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/86166a54-5971-44d4-9dd9-8345ed8464ca/ENCFF606FJE.bigBed\ color 6,218,147\ labelFields none\ longLabel SK-N-DZ treated with dimethyl sulfoxide for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FJL Peak\ track wgEncodeReg4Epigenetics_ENCFF606FJE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF304ZAM ENCSR648OSR + strand bigWig Tibial nerve tissue male adult (54 years) + strand total RNA-seq signal 2 709 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/41eea864-c66d-4fa2-ac49-4c2e3dbba030/ENCFF304ZAM.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648OSR + strand\ track wgEncodeReg4RnaSeq_ENCFF304ZAM\ type bigWig\ visibility full\ encTfChipPkENCFF968SUH K562 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in K562 from ENCODE 3 (ENCFF968SUH) 0 709 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in K562 from ENCODE 3 (ENCFF968SUH)\ parent encTfChipPk off\ shortLabel K562 RCOR1\ subGroups cellType=K562 factor=RCOR1\ track encTfChipPkENCFF968SUH\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward 0 709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward 1 709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ ENCFF419XND ENCFF419XND bigWig Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (3) H3K4me3, ENCFF419XND 2 710 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF419XND.bw\ color 255,0,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (81 years) with Cognitive impairment: (3) H3K4me3, ENCFF419XND\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 77.2\ shortLabel ENCFF419XND\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__81_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO077CCP dataType=typeH3k4me3\ track ENCFF419XND\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF455OQM ENCSR000DLW Peak bigBed 5 Endothelial cell of umbilical vein newborn CTCF peaks 4 710 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/473a8ac0-e6f7-472d-ba86-b45763f4dce0/ENCFF455OQM.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF455OQM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF450AHB ENCSR000FJL Signal bigWig SK-N-DZ treated with dimethyl sulfoxide for 72 hours DNase signal 2 710 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9569425d-04bc-4802-86a2-8068b5f427ff/ENCFF450AHB.bigWig\ color 6,218,147\ longLabel SK-N-DZ treated with dimethyl sulfoxide for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000FJL Signal\ track wgEncodeReg4Epigenetics_ENCFF450AHB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF410TEC ENCSR648OSR - strand bigWig Tibial nerve tissue male adult (54 years) - strand total RNA-seq signal 2 710 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/9637943e-851b-4fba-b61f-358b13794395/ENCFF410TEC.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648OSR - strand\ track wgEncodeReg4RnaSeq_ENCFF410TEC\ type bigWig\ visibility full\ encTfChipPkENCFF290ESJ K562 REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF290ESJ) 0 710 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF290ESJ)\ parent encTfChipPk off\ shortLabel K562 REST 1\ subGroups cellType=K562 factor=REST\ track encTfChipPkENCFF290ESJ\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_rev Tc:Mcf7ToHrg_02hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse 0 710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_rev Tc:Mcf7ToHrg_02hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse 1 710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep1.CNhs12441.13054-139H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep1_CNhs12441_13054-139H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13054-139H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep1_CNhs12441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13054-139H3\ urlLabel FANTOM5 Details:\ ENCFF862YHY ENCFF862YHY bigWig Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (3) H3K4me3, ENCFF862YHY 2 711 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF862YHY.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (85 years) with Alzheimers disease: (3) H3K4me3, ENCFF862YHY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 69.2\ shortLabel ENCFF862YHY\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__85_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO080EZF dataType=typeH3k4me3\ track ENCFF862YHY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF047DPU ENCSR000DLW Signal bigWig Endothelial cell of umbilical vein newborn CTCF ENCSR000DLW signal 2 711 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6fe39c9e-c134-4113-8247-bdedebcdd077/ENCFF047DPU.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn CTCF ENCSR000DLW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLW Signal\ track wgEncodeReg4TfChip_ENCFF047DPU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF238SWW ENCSR000NPF Peak bigBed 5 Cardiac muscle cell originated from RUES2 H3K27ac peak 4 711 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/2110ff57-18b5-41ee-991d-7016a42a4814/ENCFF238SWW.bigBed\ color 181,145,0\ longLabel Cardiac muscle cell originated from RUES2 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000NPF Peak\ track wgEncodeReg4Epigenetics_ENCFF238SWW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF196UHI ENCSR648YUM + strand bigWig Placenta tissue female embryo + strand total RNA-seq signal 2 711 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/bf5e5008-dc8f-4834-a29f-fc6100849e65/ENCFF196UHI.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648YUM + strand\ track wgEncodeReg4RnaSeq_ENCFF196UHI\ type bigWig\ visibility full\ encTfChipPkENCFF023ZUW K562 REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF023ZUW) 0 711 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in K562 from ENCODE 3 (ENCFF023ZUW)\ parent encTfChipPk off\ shortLabel K562 REST 2\ subGroups cellType=K562 factor=REST\ track encTfChipPkENCFF023ZUW\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward 0 711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward 1 711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ ENCFF889QTE ENCFF889QTE bigWig Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (3) H3K4me3, ENCFF889QTE 2 712 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF889QTE.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (81 years) with Alzheimers disease: (3) H3K4me3, ENCFF889QTE\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 68.2\ shortLabel ENCFF889QTE\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__81_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO097MEH dataType=typeH3k4me3\ track ENCFF889QTE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF137JSF ENCSR000DLY Peak bigBed 5 K562 POLR2A peaks 4 712 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1cd7aefc-57b7-4962-8b6c-bd684111d2b5/ENCFF137JSF.bigBed\ labelFields none\ longLabel K562 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF137JSF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF485DKZ ENCSR000NPF Signal bigWig Cardiac muscle cell originated from RUES2 H3K27ac signal 2 712 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/8a788a19-56de-443d-acff-a2b971f96700/ENCFF485DKZ.bigWig\ color 181,145,0\ longLabel Cardiac muscle cell originated from RUES2 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000NPF Signal\ track wgEncodeReg4Epigenetics_ENCFF485DKZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF399DLW ENCSR648YUM - strand bigWig Placenta tissue female embryo - strand total RNA-seq signal 2 712 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/ae72c839-7306-4241-ab70-b2c76b819643/ENCFF399DLW.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR648YUM - strand\ track wgEncodeReg4RnaSeq_ENCFF399DLW\ type bigWig\ visibility full\ encTfChipPkENCFF905GXS K562 RFX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF905GXS) 0 712 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF905GXS)\ parent encTfChipPk off\ shortLabel K562 RFX1 1\ subGroups cellType=K562 factor=RFX1\ track encTfChipPkENCFF905GXS\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_rev Tc:Mcf7ToHrg_02hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse 0 712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_rev Tc:Mcf7ToHrg_02hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse 1 712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep2.CNhs12658.13120-140F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep2_CNhs12658_13120-140F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13120-140F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep2_CNhs12658_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13120-140F6\ urlLabel FANTOM5 Details:\ ENCFF353SJI ENCFF353SJI bigWig Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF353SJI 2 713 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF353SJI.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF353SJI\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 105.2\ shortLabel ENCFF353SJI\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO101GPB dataType=typeH3k4me3\ track ENCFF353SJI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF348QLX ENCSR000DLY Signal bigWig K562 POLR2A ENCSR000DLY signal 2 713 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/fdd0f1f7-9f4e-4e6e-9ad2-01d646453a19/ENCFF348QLX.bigWig\ color 254,75,173\ longLabel K562 POLR2A ENCSR000DLY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLY Signal\ track wgEncodeReg4TfChip_ENCFF348QLX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF399UDR ENCSR000RBT Peak bigBed 5 HG03571 ATAC peak 4 713 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/91d7e2a9-4dc7-4e33-b2d9-ff42d10ec0da/ENCFF399UDR.bigBed\ color 2,199,185\ longLabel HG03571 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000RBT Peak\ track wgEncodeReg4Epigenetics_ENCFF399UDR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF639CHW ENCSR650SDA + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 713 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/bf306bf2-5052-44f0-8fac-0cecf7c865fa/ENCFF639CHW.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR650SDA + strand\ track wgEncodeReg4RnaSeq_ENCFF639CHW\ type bigWig\ visibility full\ encTfChipPkENCFF193PVX K562 RFX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF193PVX) 0 713 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in K562 from ENCODE 3 (ENCFF193PVX)\ parent encTfChipPk off\ shortLabel K562 RFX1 2\ subGroups cellType=K562 factor=RFX1\ track encTfChipPkENCFF193PVX\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_fwd Tc:Mcf7ToHrg_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward 0 713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_fwd Tc:Mcf7ToHrg_02hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward 1 713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ ENCFF018QTQ ENCFF018QTQ bigWig Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (3) H3K4me3, ENCFF018QTQ 2 714 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF018QTQ.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (88 years) with mild cognitive impairment: (3) H3K4me3, ENCFF018QTQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 83.2\ shortLabel ENCFF018QTQ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__88_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO151OJB dataType=typeH3k4me3\ track ENCFF018QTQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF640IEK ENCSR000DLZ Peak bigBed 5 K562 MYC peaks 4 714 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/4c25415a-ea8e-4da8-aecd-105f5e071450/ENCFF640IEK.bigBed\ labelFields none\ longLabel K562 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF640IEK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF739XMW ENCSR000RBT Signal bigWig HG03571 ATAC signal 2 714 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/c3b33b4a-c80e-420a-9733-e73b689f1f96/ENCFF739XMW.bigWig\ color 2,199,185\ longLabel HG03571 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR000RBT Signal\ track wgEncodeReg4Epigenetics_ENCFF739XMW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF199EQA ENCSR650SDA - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 714 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/a74eba16-4977-48e6-be12-41d643c32a5e/ENCFF199EQA.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR650SDA - strand\ track wgEncodeReg4RnaSeq_ENCFF199EQA\ type bigWig\ visibility full\ encTfChipPkENCFF201YKU K562 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in K562 from ENCODE 3 (ENCFF201YKU) 0 714 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in K562 from ENCODE 3 (ENCFF201YKU)\ parent encTfChipPk off\ shortLabel K562 RFX5\ subGroups cellType=K562 factor=RFX5\ track encTfChipPkENCFF201YKU\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_rev Tc:Mcf7ToHrg_02hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse 0 714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_rev Tc:Mcf7ToHrg_02hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse 1 714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr00min%2c%20biol_rep3.CNhs12760.13186-141D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr00min, biol_rep3_CNhs12760_13186-141D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13186-141D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr00minBiolRep3_CNhs12760_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13186-141D9\ urlLabel FANTOM5 Details:\ ENCFF971OSG ENCFF971OSG bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF971OSG 2 715 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF971OSG.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF971OSG\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 89.2\ shortLabel ENCFF971OSG\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO153NUY dataType=typeH3k4me3\ track ENCFF971OSG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF341GGH ENCSR000DLZ Signal bigWig K562 MYC ENCSR000DLZ signal 2 715 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/421c58ac-e74f-4e32-a0af-8bebf04b98af/ENCFF341GGH.bigWig\ color 254,75,173\ longLabel K562 MYC ENCSR000DLZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DLZ Signal\ track wgEncodeReg4TfChip_ENCFF341GGH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF919VNL ENCSR001QTZ Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak 4 715 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/0e4d5340-e8dc-4cf5-9fe4-312617a09eda/ENCFF919VNL.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR001QTZ Peak\ track wgEncodeReg4Epigenetics_ENCFF919VNL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF185FBE ENCSR652PHZ + strand bigWig Left cardiac atrium tissue female adult (59 years) + strand total RNA-seq signal 2 715 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/688558cd-d094-46d5-8085-5af1704e3e49/ENCFF185FBE.bigWig\ color 116,50,165\ longLabel Left cardiac atrium tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR652PHZ + strand\ track wgEncodeReg4RnaSeq_ENCFF185FBE\ type bigWig\ visibility full\ encTfChipPkENCFF599CBB K562 RLF narrowPeak Transcription Factor ChIP-seq Peaks of RLF in K562 from ENCODE 3 (ENCFF599CBB) 0 715 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RLF in K562 from ENCODE 3 (ENCFF599CBB)\ parent encTfChipPk off\ shortLabel K562 RLF\ subGroups cellType=K562 factor=RLF\ track encTfChipPkENCFF599CBB\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward 0 715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward 1 715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ ENCFF319HQY ENCFF319HQY bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (3) H3K4me3, ENCFF319HQY 2 716 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF319HQY.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (3) H3K4me3, ENCFF319HQY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 76.2\ shortLabel ENCFF319HQY\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO201EUI dataType=typeH3k4me3\ track ENCFF319HQY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF082GOI ENCSR000DMA Peak bigBed 5 K562 CTCF peaks 4 716 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/691bf3f6-d8bd-4e22-b96c-aaa08a1a303a/ENCFF082GOI.bigBed\ labelFields none\ longLabel K562 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF082GOI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF084QJF ENCSR001QTZ Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 716 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/db341207-bd37-486c-8979-33373eb77f02/ENCFF084QJF.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR001QTZ Signal\ track wgEncodeReg4Epigenetics_ENCFF084QJF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF045FFB ENCSR652PHZ - strand bigWig Left cardiac atrium tissue female adult (59 years) - strand total RNA-seq signal 2 716 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/cc6cefdf-7669-474a-9982-4e488dcf2057/ENCFF045FFB.bigWig\ color 116,50,165\ longLabel Left cardiac atrium tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR652PHZ - strand\ track wgEncodeReg4RnaSeq_ENCFF045FFB\ type bigWig\ visibility full\ encTfChipPkENCFF349MSP K562 RNF2 1 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF349MSP) 0 716 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF349MSP)\ parent encTfChipPk off\ shortLabel K562 RNF2 1\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF349MSP\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_rev Tc:Mcf7ToHrg_02hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse 0 716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_rev Tc:Mcf7ToHrg_02hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse 1 716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep1.CNhs12442.13055-139H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep1_CNhs12442_13055-139H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13055-139H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep1_CNhs12442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13055-139H4\ urlLabel FANTOM5 Details:\ ENCFF732JQY ENCFF732JQY bigWig Middle frontal area 46, male adult (87 years): (3) H3K4me3, ENCFF732JQY 2 717 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF732JQY.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (87 years): (3) H3K4me3, ENCFF732JQY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 114.2\ shortLabel ENCFF732JQY\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__87_years_ biosampleType=tissue donor=ENCDO203ASI dataType=typeH3k4me3\ track ENCFF732JQY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF110AJS ENCSR000DMA Signal bigWig K562 CTCF ENCSR000DMA signal 2 717 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7c3a02f3-1e77-459b-b865-e29c5f5f3077/ENCFF110AJS.bigWig\ color 254,75,173\ longLabel K562 CTCF ENCSR000DMA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMA Signal\ track wgEncodeReg4TfChip_ENCFF110AJS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF541IKF ENCSR001SHB Peak bigBed 5 Stomach tissue male adult 34 years H3K27ac peak 4 717 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d2c3260b-c146-45e8-97e8-15c548f15cac/ENCFF541IKF.bigBed\ color 181,145,0\ longLabel Stomach tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR001SHB Peak\ track wgEncodeReg4Epigenetics_ENCFF541IKF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF539ISW ENCSR653DFZ + strand bigWig G401 + strand total RNA-seq signal 2 717 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/622b37d8-af5d-4469-a114-99ccd5b32a38/ENCFF539ISW.bigWig\ color 92,161,153\ longLabel G401 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR653DFZ + strand\ track wgEncodeReg4RnaSeq_ENCFF539ISW\ type bigWig\ visibility full\ encTfChipPkENCFF820LKT K562 RNF2 2 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF820LKT) 0 717 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF820LKT)\ parent encTfChipPk off\ shortLabel K562 RNF2 2\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF820LKT\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward 0 717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward 1 717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ ENCFF871ZNR ENCFF871ZNR bigWig Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF871ZNR 2 718 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF871ZNR.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF871ZNR\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 104.2\ shortLabel ENCFF871ZNR\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO218FFZ dataType=typeH3k4me3\ track ENCFF871ZNR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF335EKK ENCSR000DMC Peak bigBed 5 Kidney tissue male adult (22 years) and male adult (27 years) and male adult (35 years) CTCF peaks 4 718 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d0e3a135-0282-4606-98b8-6be3455590ad/ENCFF335EKK.bigBed\ labelFields none\ longLabel Kidney tissue male adult (22 years) and male adult (27 years) and male adult (35 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF335EKK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF950NLS ENCSR001SHB Signal bigWig Stomach tissue male adult 34 years H3K27ac signal 2 718 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/36b47f19-8bcc-48af-8072-4da24c2291bd/ENCFF950NLS.bigWig\ color 181,145,0\ longLabel Stomach tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR001SHB Signal\ track wgEncodeReg4Epigenetics_ENCFF950NLS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF165QWB ENCSR653DFZ - strand bigWig G401 - strand total RNA-seq signal 2 718 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/8331f25d-be09-4839-b40f-0fa438ac94c4/ENCFF165QWB.bigWig\ color 92,161,153\ longLabel G401 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR653DFZ - strand\ track wgEncodeReg4RnaSeq_ENCFF165QWB\ type bigWig\ visibility full\ encTfChipPkENCFF741CLJ K562 RNF2 3 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF741CLJ) 0 718 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF741CLJ)\ parent encTfChipPk off\ shortLabel K562 RNF2 3\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF741CLJ\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_rev Tc:Mcf7ToHrg_02hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse 0 718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_rev Tc:Mcf7ToHrg_02hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse 1 718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep2.CNhs12659.13121-140F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep2_CNhs12659_13121-140F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13121-140F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep2_CNhs12659_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13121-140F7\ urlLabel FANTOM5 Details:\ ENCFF298AQY ENCFF298AQY bigWig Middle frontal area 46, female adult (78 years): (3) H3K4me3, ENCFF298AQY 2 719 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF298AQY.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (78 years): (3) H3K4me3, ENCFF298AQY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 94.2\ shortLabel ENCFF298AQY\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__78_years_ biosampleType=tissue donor=ENCDO236YSH dataType=typeH3k4me3\ track ENCFF298AQY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF446TPO ENCSR000DMC Signal bigWig Kidney tissue male adult (22 years) and male adult (27 years) and male adult (35 years) CTCF ENCSR000DMC signal 2 719 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8c194f62-e886-4306-9e26-498d1f86530b/ENCFF446TPO.bigWig\ color 92,161,153\ longLabel Kidney tissue male adult (22 years) and male adult (27 years) and male adult (35 years) CTCF ENCSR000DMC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMC Signal\ track wgEncodeReg4TfChip_ENCFF446TPO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF222XNK ENCSR002IHL Peak bigBed 5 Head of caudate nucleus tissue male adult 83 years DNase peak 4 719 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/16/8842599c-edad-4e20-8c7b-e3d1c92be8d4/ENCFF222XNK.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR002IHL Peak\ track wgEncodeReg4Epigenetics_ENCFF222XNK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF844TIV ENCSR653ZJF + strand bigWig Transverse colon tissue male adult (37 years) + strand total RNA-seq signal 2 719 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bc6e4a20-7aad-4858-b9ba-aec85611ec40/ENCFF844TIV.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR653ZJF + strand\ track wgEncodeReg4RnaSeq_ENCFF844TIV\ type bigWig\ visibility full\ encTfChipPkENCFF462AZY K562 RNF2 4 narrowPeak Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF462AZY) 0 719 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RNF2 in K562 from ENCODE 3 (ENCFF462AZY)\ parent encTfChipPk off\ shortLabel K562 RNF2 4\ subGroups cellType=K562 factor=RNF2\ track encTfChipPkENCFF462AZY\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_fwd Tc:Mcf7ToHrg_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward 0 719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_fwd Tc:Mcf7ToHrg_02hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward 1 719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ ENCFF834IHE ENCFF834IHE bigWig Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF834IHE 2 720 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF834IHE.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (90 or above years): (3) H3K4me3, ENCFF834IHE\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 103.2\ shortLabel ENCFF834IHE\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__90_or_above_years_ biosampleType=tissue donor=ENCDO250PFZ dataType=typeH3k4me3\ track ENCFF834IHE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF519YVI ENCSR000DMF Peak bigBed 5 LNCaP clone FGC CTCF peaks 4 720 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/02d4b033-92de-4d0f-939b-89af51f48e59/ENCFF519YVI.bigBed\ labelFields none\ longLabel LNCaP clone FGC CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF519YVI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF505HNJ ENCSR002IHL Signal bigWig Head of caudate nucleus tissue male adult 83 years DNase signal 2 720 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/16/c0fe32a1-c207-4899-bfc6-856efd3b655b/ENCFF505HNJ.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR002IHL Signal\ track wgEncodeReg4Epigenetics_ENCFF505HNJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF088ZXI ENCSR653ZJF - strand bigWig Transverse colon tissue male adult (37 years) - strand total RNA-seq signal 2 720 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/d1245d13-5103-45f8-89ef-cb5871df808f/ENCFF088ZXI.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR653ZJF - strand\ track wgEncodeReg4RnaSeq_ENCFF088ZXI\ type bigWig\ visibility full\ encTfChipPkENCFF545WXN K562 RUNX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF545WXN) 0 720 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF545WXN)\ parent encTfChipPk off\ shortLabel K562 RUNX1 1\ subGroups cellType=K562 factor=RUNX1\ track encTfChipPkENCFF545WXN\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_rev Tc:Mcf7ToHrg_02hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse 0 720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_rev Tc:Mcf7ToHrg_02hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse 1 720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2002hr30min%2c%20biol_rep3.CNhs12761.13187-141E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 02hr30min, biol_rep3_CNhs12761_13187-141E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13187-141E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG02hr30minBiolRep3_CNhs12761_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13187-141E1\ urlLabel FANTOM5 Details:\ ENCFF616FVZ ENCFF616FVZ bigWig Middle frontal area 46, female adult (82 years): (3) H3K4me3, ENCFF616FVZ 2 721 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF616FVZ.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (82 years): (3) H3K4me3, ENCFF616FVZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 96.2\ shortLabel ENCFF616FVZ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__82_years_ biosampleType=tissue donor=ENCDO290OPS dataType=typeH3k4me3\ track ENCFF616FVZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF076NHL ENCSR000DMF Signal bigWig LNCaP clone FGC CTCF ENCSR000DMF signal 2 721 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0f17548a-d561-4406-9b7b-edc443d02551/ENCFF076NHL.bigWig\ color 140,140,140\ longLabel LNCaP clone FGC CTCF ENCSR000DMF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMF Signal\ track wgEncodeReg4TfChip_ENCFF076NHL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF562QQJ ENCSR002RFV Peak bigBed 5 Activated T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 721 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/2d49d1b0-3d01-423c-a2aa-c09b0f6becbf/ENCFF562QQJ.bigBed\ color 181,145,0\ longLabel Activated T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR002RFV Peak\ track wgEncodeReg4Epigenetics_ENCFF562QQJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF838EIM ENCSR669GBC + strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal 2 721 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/83f9265e-9101-4005-ad0b-9cbe390408a8/ENCFF838EIM.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR669GBC + strand\ track wgEncodeReg4RnaSeq_ENCFF838EIM\ type bigWig\ visibility full\ encTfChipPkENCFF091MQJ K562 RUNX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF091MQJ) 0 721 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of RUNX1 in K562 from ENCODE 3 (ENCFF091MQJ)\ parent encTfChipPk off\ shortLabel K562 RUNX1 2\ subGroups cellType=K562 factor=RUNX1\ track encTfChipPkENCFF091MQJ\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward 0 721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward 1 721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ ENCFF127DBK ENCFF127DBK bigWig Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (3) H3K4me3, ENCFF127DBK 2 722 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF127DBK.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (87 years) with mild cognitive impairment: (3) H3K4me3, ENCFF127DBK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 82.2\ shortLabel ENCFF127DBK\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__87_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO354SJE dataType=typeH3k4me3\ track ENCFF127DBK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF782RBX ENCSR000DMH Peak bigBed 5 Lung tissue male adult (27 years) and male adult (35 years) CTCF peaks 4 722 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/d98570e5-9630-47fa-91ea-f9418b4bc59d/ENCFF782RBX.bigBed\ labelFields none\ longLabel Lung tissue male adult (27 years) and male adult (35 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF782RBX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF496HBZ ENCSR002RFV Signal bigWig Activated T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 722 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/3106cd27-49b0-4797-996d-b1a36d181bf7/ENCFF496HBZ.bigWig\ color 181,145,0\ longLabel Activated T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 , anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR002RFV Signal\ track wgEncodeReg4Epigenetics_ENCFF496HBZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF748SGO ENCSR669GBC - strand bigWig Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal 2 722 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/653aa408-a7cb-4042-a595-e84f181a90be/ENCFF748SGO.bigWig\ color 155,155,18\ longLabel Cognitive impairment, Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR669GBC - strand\ track wgEncodeReg4RnaSeq_ENCFF748SGO\ type bigWig\ visibility full\ encTfChipPkENCFF411YVY K562 SAFB narrowPeak Transcription Factor ChIP-seq Peaks of SAFB in K562 from ENCODE 3 (ENCFF411YVY) 0 722 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SAFB in K562 from ENCODE 3 (ENCFF411YVY)\ parent encTfChipPk off\ shortLabel K562 SAFB\ subGroups cellType=K562 factor=SAFB\ track encTfChipPkENCFF411YVY\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_rev Tc:Mcf7ToHrg_03hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse 0 722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_rev Tc:Mcf7ToHrg_03hr00minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse 1 722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep1.CNhs12443.13056-139H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep1_CNhs12443_13056-139H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13056-139H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep1_CNhs12443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13056-139H5\ urlLabel FANTOM5 Details:\ ENCFF478CLR ENCFF478CLR bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (3) H3K4me3, ENCFF478CLR 2 723 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF478CLR.bw\ color 255,0,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (3) H3K4me3, ENCFF478CLR\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 80.2\ shortLabel ENCFF478CLR\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO359XWR dataType=typeH3k4me3\ track ENCFF478CLR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF827WDQ ENCSR000DMH Signal bigWig Lung tissue male adult (27 years) and male adult (35 years) CTCF ENCSR000DMH signal 2 723 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/012c87c1-c628-4f05-b64b-0445a1c0cc4d/ENCFF827WDQ.bigWig\ color 130,163,45\ longLabel Lung tissue male adult (27 years) and male adult (35 years) CTCF ENCSR000DMH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMH Signal\ track wgEncodeReg4TfChip_ENCFF827WDQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF305SRT ENCSR002YRE Peak bigBed 5 IMR-90 H3K27ac peak 4 723 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/92567090-b2c7-46e3-8ef7-7fc1c0d3f345/ENCFF305SRT.bigBed\ color 181,145,0\ longLabel IMR-90 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR002YRE Peak\ track wgEncodeReg4Epigenetics_ENCFF305SRT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF334FVR ENCSR669KQU + strand bigWig SK-MEL-5 + strand total RNA-seq signal 2 723 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/b770c815-6446-4c5d-9706-8f657676b2ec/ENCFF334FVR.bigWig\ color 127,133,209\ longLabel SK-MEL-5 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR669KQU + strand\ track wgEncodeReg4RnaSeq_ENCFF334FVR\ type bigWig\ visibility full\ encTfChipPkENCFF087DKT K562 SAFB2 narrowPeak Transcription Factor ChIP-seq Peaks of SAFB2 in K562 from ENCODE 3 (ENCFF087DKT) 0 723 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SAFB2 in K562 from ENCODE 3 (ENCFF087DKT)\ parent encTfChipPk off\ shortLabel K562 SAFB2\ subGroups cellType=K562 factor=SAFB2\ track encTfChipPkENCFF087DKT\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward 0 723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward 1 723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ ENCFF546VCE ENCFF546VCE bigWig Middle frontal area 46, male adult (82 years): (3) H3K4me3, ENCFF546VCE 2 724 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF546VCE.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (82 years): (3) H3K4me3, ENCFF546VCE\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 109.2\ shortLabel ENCFF546VCE\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__82_years_ biosampleType=tissue donor=ENCDO407UTA dataType=typeH3k4me3\ track ENCFF546VCE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF767RTQ ENCSR000DMJ Peak bigBed 5 MCF-7 MYC peaks 4 724 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/e3b6354e-1170-41d9-b33e-288e6b0f0b95/ENCFF767RTQ.bigBed\ labelFields none\ longLabel MCF-7 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF767RTQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF699OAR ENCSR002YRE Signal bigWig IMR-90 H3K27ac signal 2 724 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/ab186975-338d-4193-a807-8da0e76869a9/ENCFF699OAR.bigWig\ color 181,145,0\ longLabel IMR-90 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR002YRE Signal\ track wgEncodeReg4Epigenetics_ENCFF699OAR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF228PZS ENCSR669KQU - strand bigWig SK-MEL-5 - strand total RNA-seq signal 2 724 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/ed4f36a4-bfa4-44f3-9d8b-90848d59b84b/ENCFF228PZS.bigWig\ color 127,133,209\ longLabel SK-MEL-5 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR669KQU - strand\ track wgEncodeReg4RnaSeq_ENCFF228PZS\ type bigWig\ visibility full\ encTfChipPkENCFF103RHL K562 SAP30 narrowPeak Transcription Factor ChIP-seq Peaks of SAP30 in K562 from ENCODE 3 (ENCFF103RHL) 0 724 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SAP30 in K562 from ENCODE 3 (ENCFF103RHL)\ parent encTfChipPk off\ shortLabel K562 SAP30\ subGroups cellType=K562 factor=SAP30\ track encTfChipPkENCFF103RHL\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_rev Tc:Mcf7ToHrg_03hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse 0 724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_rev Tc:Mcf7ToHrg_03hr00minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse 1 724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep2.CNhs12660.13122-140F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep2_CNhs12660_13122-140F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13122-140F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep2_CNhs12660_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13122-140F8\ urlLabel FANTOM5 Details:\ ENCFF981HHV ENCFF981HHV bigWig Middle frontal area 46, female adult (87 years): (3) H3K4me3, ENCFF981HHV 2 725 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF981HHV.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (87 years): (3) H3K4me3, ENCFF981HHV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 99.2\ shortLabel ENCFF981HHV\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO423GGP dataType=typeH3k4me3\ track ENCFF981HHV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF608BTU ENCSR000DMJ Signal bigWig MCF-7 MYC ENCSR000DMJ signal 2 725 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/614ea065-904e-4361-8827-9d5980d10f54/ENCFF608BTU.bigWig\ color 65,171,173\ longLabel MCF-7 MYC ENCSR000DMJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMJ Signal\ track wgEncodeReg4TfChip_ENCFF608BTU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF739LIP ENCSR003SWN Peak bigBed 5 Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 725 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/6782d7c0-75ce-4d9f-98f1-c019829e34b6/ENCFF739LIP.bigBed\ color 181,145,0\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR003SWN Peak\ track wgEncodeReg4Epigenetics_ENCFF739LIP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF871BXJ ENCSR671FBB + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal 2 725 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/fd62f23a-60fd-4ebe-93ec-ae9b8a835b3a/ENCFF871BXJ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR671FBB + strand\ track wgEncodeReg4RnaSeq_ENCFF871BXJ\ type bigWig\ visibility full\ encTfChipPkENCFF690WNQ K562 SETDB1 narrowPeak Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF690WNQ) 0 725 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SETDB1 in K562 from ENCODE 3 (ENCFF690WNQ)\ parent encTfChipPk off\ shortLabel K562 SETDB1\ subGroups cellType=K562 factor=SETDB1\ track encTfChipPkENCFF690WNQ\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_fwd Tc:Mcf7ToHrg_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward 0 725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_fwd Tc:Mcf7ToHrg_03hr00minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward 1 725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ ENCFF005KPT ENCFF005KPT bigWig Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (3) H3K4me3, ENCFF005KPT 2 726 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF005KPT.bw\ color 255,0,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (90 or above years) with Cognitive impairment: (3) H3K4me3, ENCFF005KPT\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 79.2\ shortLabel ENCFF005KPT\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__90_or_above_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO448YMQ dataType=typeH3k4me3\ track ENCFF005KPT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF309IKZ ENCSR000DMK Peak bigBed 5 MCF-7 POLR2A peaks 4 726 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/241b7289-a2e8-426f-a936-ddbe82e01321/ENCFF309IKZ.bigBed\ labelFields none\ longLabel MCF-7 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF309IKZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF289NXD ENCSR003SWN Signal bigWig Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 726 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/8ff4e49d-b2ef-4b36-b744-fbc75ecb1a4a/ENCFF289NXD.bigWig\ color 181,145,0\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR003SWN Signal\ track wgEncodeReg4Epigenetics_ENCFF289NXD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF432QOV ENCSR671FBB - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal 2 726 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/68186748-7a6a-4c4c-b7e6-ef111b363a3c/ENCFF432QOV.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR671FBB - strand\ track wgEncodeReg4RnaSeq_ENCFF432QOV\ type bigWig\ visibility full\ encTfChipPkENCFF802JAN K562 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF802JAN) 0 726 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in K562 from ENCODE 3 (ENCFF802JAN)\ parent encTfChipPk off\ shortLabel K562 SIN3A\ subGroups cellType=K562 factor=SIN3A\ track encTfChipPkENCFF802JAN\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_rev Tc:Mcf7ToHrg_03hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse 0 726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_rev Tc:Mcf7ToHrg_03hr00minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse 1 726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr00min%2c%20biol_rep3.CNhs12762.13188-141E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr00min, biol_rep3_CNhs12762_13188-141E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13188-141E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr00minBiolRep3_CNhs12762_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13188-141E2\ urlLabel FANTOM5 Details:\ ENCFF261GPQ ENCFF261GPQ bigWig Middle frontal area 46, female adult (83 years): (3) H3K4me3, ENCFF261GPQ 2 727 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF261GPQ.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (83 years): (3) H3K4me3, ENCFF261GPQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 97.2\ shortLabel ENCFF261GPQ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__83_years_ biosampleType=tissue donor=ENCDO448ZXP dataType=typeH3k4me3\ track ENCFF261GPQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF453SAI ENCSR000DMK Signal bigWig MCF-7 POLR2A ENCSR000DMK signal 2 727 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/7a0d53e1-77b6-4b28-82a0-9d52d51076a3/ENCFF453SAI.bigWig\ color 65,171,173\ longLabel MCF-7 POLR2A ENCSR000DMK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMK Signal\ track wgEncodeReg4TfChip_ENCFF453SAI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF571ODZ ENCSR003SZZ Peak bigBed 5 Esophagus squamous epithelium tissue female adult 51 years CTCF peak 4 727 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/b5965905-5857-4d0f-92a3-566d98bea9d7/ENCFF571ODZ.bigBed\ color 0,176,240\ labelFields none\ longLabel Esophagus squamous epithelium tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR003SZZ Peak\ track wgEncodeReg4Epigenetics_ENCFF571ODZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF784RHW ENCSR671IYC + strand bigWig Body of pancreas tissue female adult (51 years) + strand total RNA-seq signal 2 727 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/9c8cf003-a853-4013-aa28-9212107e162e/ENCFF784RHW.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR671IYC + strand\ track wgEncodeReg4RnaSeq_ENCFF784RHW\ type bigWig\ visibility full\ encTfChipPkENCFF543INR K562 SIN3B narrowPeak Transcription Factor ChIP-seq Peaks of SIN3B in K562 from ENCODE 3 (ENCFF543INR) 0 727 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIN3B in K562 from ENCODE 3 (ENCFF543INR)\ parent encTfChipPk off\ shortLabel K562 SIN3B\ subGroups cellType=K562 factor=SIN3B\ track encTfChipPkENCFF543INR\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward 0 727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr1+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward 1 727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ ENCFF062WLH ENCFF062WLH bigWig Middle frontal area 46, female adult (84 years): (3) H3K4me3, ENCFF062WLH 2 728 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF062WLH.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (84 years): (3) H3K4me3, ENCFF062WLH\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 98.2\ shortLabel ENCFF062WLH\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__84_years_ biosampleType=tissue donor=ENCDO461DJY dataType=typeH3k4me3\ track ENCFF062WLH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF954TUV ENCSR000DML Peak bigBed 5 MCF-7 CTCF peaks 4 728 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8713e1ce-fe56-47cd-80a5-988696bb56bb/ENCFF954TUV.bigBed\ labelFields none\ longLabel MCF-7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DML Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF954TUV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF890GCO ENCSR003SZZ Signal bigWig Esophagus squamous epithelium tissue female adult 51 years CTCF signal 2 728 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/52784431-d6ca-4700-bc45-a91a6389175d/ENCFF890GCO.bigWig\ color 0,176,240\ longLabel Esophagus squamous epithelium tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR003SZZ Signal\ track wgEncodeReg4Epigenetics_ENCFF890GCO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF200EWP ENCSR671IYC - strand bigWig Body of pancreas tissue female adult (51 years) - strand total RNA-seq signal 2 728 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/6eb3d1e7-d49b-4dab-a7af-cab786db44dc/ENCFF200EWP.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR671IYC - strand\ track wgEncodeReg4RnaSeq_ENCFF200EWP\ type bigWig\ visibility full\ encTfChipPkENCFF747XDN K562 SIRT6 narrowPeak Transcription Factor ChIP-seq Peaks of SIRT6 in K562 from ENCODE 3 (ENCFF747XDN) 0 728 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIRT6 in K562 from ENCODE 3 (ENCFF747XDN)\ parent encTfChipPk off\ shortLabel K562 SIRT6\ subGroups cellType=K562 factor=SIRT6\ track encTfChipPkENCFF747XDN\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_rev Tc:Mcf7ToHrg_03hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse 0 728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_rev Tc:Mcf7ToHrg_03hr30minBr1- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse 1 728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep1.CNhs12444.13057-139H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep1_CNhs12444_13057-139H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13057-139H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep1_CNhs12444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13057-139H6\ urlLabel FANTOM5 Details:\ ENCFF499ALA ENCFF499ALA bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF499ALA 2 729 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF499ALA.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF499ALA\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 87.2\ shortLabel ENCFF499ALA\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO471EKG dataType=typeH3k4me3\ track ENCFF499ALA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF826BBU ENCSR000DML Signal bigWig MCF-7 CTCF ENCSR000DML signal 2 729 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/82ceffa9-c9da-4f4e-bd3d-17f5ece676fa/ENCFF826BBU.bigWig\ color 65,171,173\ longLabel MCF-7 CTCF ENCSR000DML signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DML Signal\ track wgEncodeReg4TfChip_ENCFF826BBU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF734SXR ENCSR004AKD Peak bigBed 5 Mesenchymal stem cell female adult and female adult 41 years and female adult 59 years, originated from adipose tissue H3K4me3 peak 4 729 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/97355d37-0d49-4f0f-bab2-d456fc86d140/ENCFF734SXR.bigBed\ color 255,0,0\ longLabel Mesenchymal stem cell female adult and female adult 41 years and female adult 59 years, originated from adipose tissue H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004AKD Peak\ track wgEncodeReg4Epigenetics_ENCFF734SXR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF402SEK ENCSR671WMH + strand bigWig Subcutaneous adipose tissue tissue male adult (54 years) + strand total RNA-seq signal 2 729 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bfd90b2d-faee-4fef-8df8-69d43e10fa09/ENCFF402SEK.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR671WMH + strand\ track wgEncodeReg4RnaSeq_ENCFF402SEK\ type bigWig\ visibility full\ encTfChipPkENCFF247LOF K562 SIX5 narrowPeak Transcription Factor ChIP-seq Peaks of SIX5 in K562 from ENCODE 3 (ENCFF247LOF) 0 729 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SIX5 in K562 from ENCODE 3 (ENCFF247LOF)\ parent encTfChipPk off\ shortLabel K562 SIX5\ subGroups cellType=K562 factor=SIX5\ track encTfChipPkENCFF247LOF\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward 0 729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr2+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward 1 729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ ENCFF752DGV ENCFF752DGV bigWig Middle frontal area 46, male adult (71 years): (3) H3K4me3, ENCFF752DGV 2 730 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF752DGV.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (71 years): (3) H3K4me3, ENCFF752DGV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 107.2\ shortLabel ENCFF752DGV\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__71_years_ biosampleType=tissue donor=ENCDO570AKP dataType=typeH3k4me3\ track ENCFF752DGV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF394LGD ENCSR000DMM Peak bigBed 5 MCF-7 MYC peaks 4 730 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/dea133e9-539e-44ea-9f9c-1ac847f31b5e/ENCFF394LGD.bigBed\ labelFields none\ longLabel MCF-7 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF394LGD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF611HLU ENCSR004AKD Signal bigWig Mesenchymal stem cell female adult and female adult 41 years and female adult 59 years, originated from adipose tissue H3K4me3 signal 2 730 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/bdbb83e1-6a52-45ef-a1e6-ce77c591d124/ENCFF611HLU.bigWig\ color 255,0,0\ longLabel Mesenchymal stem cell female adult and female adult 41 years and female adult 59 years, originated from adipose tissue H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004AKD Signal\ track wgEncodeReg4Epigenetics_ENCFF611HLU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF102QGV ENCSR671WMH - strand bigWig Subcutaneous adipose tissue tissue male adult (54 years) - strand total RNA-seq signal 2 730 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/2b6cd419-144d-49fe-aa19-b5214ca04297/ENCFF102QGV.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR671WMH - strand\ track wgEncodeReg4RnaSeq_ENCFF102QGV\ type bigWig\ visibility full\ encTfChipPkENCFF254QDM K562 SKIL narrowPeak Transcription Factor ChIP-seq Peaks of SKIL in K562 from ENCODE 3 (ENCFF254QDM) 0 730 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SKIL in K562 from ENCODE 3 (ENCFF254QDM)\ parent encTfChipPk off\ shortLabel K562 SKIL\ subGroups cellType=K562 factor=SKIL\ track encTfChipPkENCFF254QDM\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_rev Tc:Mcf7ToHrg_03hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse 0 730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_rev Tc:Mcf7ToHrg_03hr30minBr2- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse 1 730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep2.CNhs12662.13123-140F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep2_CNhs12662_13123-140F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13123-140F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep2_CNhs12662_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13123-140F9\ urlLabel FANTOM5 Details:\ ENCFF352MMI ENCFF352MMI bigWig Middle frontal area 46, male adult (83 years): (3) H3K4me3, ENCFF352MMI 2 731 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF352MMI.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (83 years): (3) H3K4me3, ENCFF352MMI\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 111.2\ shortLabel ENCFF352MMI\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO592ZWW dataType=typeH3k4me3\ track ENCFF352MMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF204CFQ ENCSR000DMM Signal bigWig MCF-7 MYC ENCSR000DMM signal 2 731 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d2417063-711d-4e43-ab20-efc9d229e91d/ENCFF204CFQ.bigWig\ color 65,171,173\ longLabel MCF-7 MYC ENCSR000DMM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMM Signal\ track wgEncodeReg4TfChip_ENCFF204CFQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF948IMX ENCSR004EKY Peak bigBed 5 Muscle layer of colon tissue female adult 56 years H3K27ac peak 4 731 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/631defd8-d0e3-446a-bc4c-cad985947a44/ENCFF948IMX.bigBed\ color 181,145,0\ longLabel Muscle layer of colon tissue female adult 56 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004EKY Peak\ track wgEncodeReg4Epigenetics_ENCFF948IMX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF985BPB ENCSR674KHG + strand bigWig Mucosa of descending colon tissue male adult (40 years) + strand total RNA-seq signal 2 731 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/b1f4e26e-a12c-418c-bb0c-3357fe899753/ENCFF985BPB.bigWig\ color 86,86,36\ longLabel Mucosa of descending colon tissue male adult (40 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR674KHG + strand\ track wgEncodeReg4RnaSeq_ENCFF985BPB\ type bigWig\ visibility full\ encTfChipPkENCFF084BUP K562 SMAD1 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD1 in K562 from ENCODE 3 (ENCFF084BUP) 0 731 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMAD1 in K562 from ENCODE 3 (ENCFF084BUP)\ parent encTfChipPk off\ shortLabel K562 SMAD1\ subGroups cellType=K562 factor=SMAD1\ track encTfChipPkENCFF084BUP\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_fwd Tc:Mcf7ToHrg_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward 0 731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_fwd Tc:Mcf7ToHrg_03hr30minBr3+ bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward 1 731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ ENCFF711EZK ENCFF711EZK bigWig Middle frontal area 46, female adult (79 years): (3) H3K4me3, ENCFF711EZK 2 732 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF711EZK.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (79 years): (3) H3K4me3, ENCFF711EZK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 95.2\ shortLabel ENCFF711EZK\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__79_years_ biosampleType=tissue donor=ENCDO609ZOG dataType=typeH3k4me3\ track ENCFF711EZK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF411WCU ENCSR000DMN Peak bigBed 5 MCF-7 POLR2A peaks 4 732 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/6ae9c463-f3a2-4327-ac22-8c655046eba4/ENCFF411WCU.bigBed\ labelFields none\ longLabel MCF-7 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF411WCU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF870HKK ENCSR004EKY Signal bigWig Muscle layer of colon tissue female adult 56 years H3K27ac signal 2 732 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/056978ac-c09b-4183-89f3-7c73daaf3ab9/ENCFF870HKK.bigWig\ color 181,145,0\ longLabel Muscle layer of colon tissue female adult 56 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004EKY Signal\ track wgEncodeReg4Epigenetics_ENCFF870HKK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF069RQE ENCSR674KHG - strand bigWig Mucosa of descending colon tissue male adult (40 years) - strand total RNA-seq signal 2 732 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/af0c9216-17cf-40ee-b6ab-bbf868af1d65/ENCFF069RQE.bigWig\ color 86,86,36\ longLabel Mucosa of descending colon tissue male adult (40 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR674KHG - strand\ track wgEncodeReg4RnaSeq_ENCFF069RQE\ type bigWig\ visibility full\ encTfChipPkENCFF186MFI K562 SMAD2 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD2 in K562 from ENCODE 3 (ENCFF186MFI) 0 732 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMAD2 in K562 from ENCODE 3 (ENCFF186MFI)\ parent encTfChipPk off\ shortLabel K562 SMAD2\ subGroups cellType=K562 factor=SMAD2\ track encTfChipPkENCFF186MFI\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_rev Tc:Mcf7ToHrg_03hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse 0 732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_rev Tc:Mcf7ToHrg_03hr30minBr3- bigWig MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse 1 732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2003hr30min%2c%20biol_rep3.CNhs12763.13189-141E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 03hr30min, biol_rep3_CNhs12763_13189-141E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13189-141E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG03hr30minBiolRep3_CNhs12763_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13189-141E3\ urlLabel FANTOM5 Details:\ ENCFF713LKP ENCFF713LKP bigWig Middle frontal area 46, male adult (78 years): (3) H3K4me3, ENCFF713LKP 2 733 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF713LKP.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (78 years): (3) H3K4me3, ENCFF713LKP\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 108.2\ shortLabel ENCFF713LKP\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__78_years_ biosampleType=tissue donor=ENCDO623FPG dataType=typeH3k4me3\ track ENCFF713LKP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF680VPV ENCSR000DMN Signal bigWig MCF-7 POLR2A ENCSR000DMN signal 2 733 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/c68b604d-9e22-4b97-a355-8bb403f9e50c/ENCFF680VPV.bigWig\ color 65,171,173\ longLabel MCF-7 POLR2A ENCSR000DMN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMN Signal\ track wgEncodeReg4TfChip_ENCFF680VPV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF289VOQ ENCSR004HIE Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 733 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/a849be18-75ed-4188-a4bb-97a1af91904a/ENCFF289VOQ.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004HIE Peak\ track wgEncodeReg4Epigenetics_ENCFF289VOQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF276PCR ENCSR675UIU + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 733 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/7dea1c4a-240c-4b2f-9614-27a9204bcaaa/ENCFF276PCR.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR675UIU + strand\ track wgEncodeReg4RnaSeq_ENCFF276PCR\ type bigWig\ visibility full\ encTfChipPkENCFF069AAY K562 SMAD5 narrowPeak Transcription Factor ChIP-seq Peaks of SMAD5 in K562 from ENCODE 3 (ENCFF069AAY) 0 733 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMAD5 in K562 from ENCODE 3 (ENCFF069AAY)\ parent encTfChipPk off\ shortLabel K562 SMAD5\ subGroups cellType=K562 factor=SMAD5\ track encTfChipPkENCFF069AAY\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_fwd Tc:Mcf7ToHrg_04hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward 0 733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_fwd Tc:Mcf7ToHrg_04hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward 1 733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ ENCFF889GHD ENCFF889GHD bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF889GHD 2 734 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF889GHD.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF889GHD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 85.2\ shortLabel ENCFF889GHD\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO634UMA dataType=typeH3k4me3\ track ENCFF889GHD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF844STM ENCSR000DMO Peak bigBed 5 MCF-7 CTCF peaks 4 734 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/534eef07-5d79-4a33-818e-e4bd87dc46e4/ENCFF844STM.bigBed\ labelFields none\ longLabel MCF-7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF844STM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF649LLS ENCSR004HIE Signal bigWig Middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 734 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/f262f71a-21ab-4f31-adfd-25d9e05f7b1b/ENCFF649LLS.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004HIE Signal\ track wgEncodeReg4Epigenetics_ENCFF649LLS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF880YKH ENCSR675UIU - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 734 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/25b0694d-6dca-4dca-bc2c-23ca7dd38cc3/ENCFF880YKH.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR675UIU - strand\ track wgEncodeReg4RnaSeq_ENCFF880YKH\ type bigWig\ visibility full\ encTfChipPkENCFF703NAE K562 SMARCA4 1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF703NAE) 0 734 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF703NAE)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 1\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF703NAE\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_rev Tc:Mcf7ToHrg_04hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse 0 734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_rev Tc:Mcf7ToHrg_04hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse 1 734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep1.CNhs12445.13058-139H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep1_CNhs12445_13058-139H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13058-139H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep1_CNhs12445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13058-139H7\ urlLabel FANTOM5 Details:\ ENCFF543PRC ENCFF543PRC bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (3) H3K4me3, ENCFF543PRC 2 735 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF543PRC.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (3) H3K4me3, ENCFF543PRC\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 75.2\ shortLabel ENCFF543PRC\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO637GUS dataType=typeH3k4me3\ track ENCFF543PRC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF663NQQ ENCSR000DMO Signal bigWig MCF-7 CTCF ENCSR000DMO signal 2 735 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f83c25e7-2044-4c25-9f3a-648f5134f736/ENCFF663NQQ.bigWig\ color 65,171,173\ longLabel MCF-7 CTCF ENCSR000DMO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMO Signal\ track wgEncodeReg4TfChip_ENCFF663NQQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF825SBK ENCSR004SUL Peak bigBed 5 GM23338 originated from GM23248 DNase peak 4 735 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/d00db2c3-445a-48fe-b6a8-5c23902d9e8f/ENCFF825SBK.bigBed\ color 6,218,147\ labelFields none\ longLabel GM23338 originated from GM23248 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004SUL Peak\ track wgEncodeReg4Epigenetics_ENCFF825SBK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF523NIT ENCSR676SRP + strand bigWig Uterus tissue female adult (59 years) + strand total RNA-seq signal 2 735 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/187c7e2e-79db-4b5a-bd92-6ce567eb7cf5/ENCFF523NIT.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR676SRP + strand\ track wgEncodeReg4RnaSeq_ENCFF523NIT\ type bigWig\ visibility full\ encTfChipPkENCFF868UOJ K562 SMARCA4 2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF868UOJ) 0 735 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF868UOJ)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 2\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF868UOJ\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_fwd Tc:Mcf7ToHrg_04hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward 0 735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_fwd Tc:Mcf7ToHrg_04hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward 1 735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ ENCFF562LUZ ENCFF562LUZ bigWig Middle frontal area 46, female adult (87 years): (3) H3K4me3, ENCFF562LUZ 2 736 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF562LUZ.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (87 years): (3) H3K4me3, ENCFF562LUZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 100.2\ shortLabel ENCFF562LUZ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__87_years_ biosampleType=tissue donor=ENCDO640RUC dataType=typeH3k4me3\ track ENCFF562LUZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF542NWJ ENCSR000DMQ Peak bigBed 5 MCF-7 MYC peaks 4 736 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/e04aa059-ac57-400e-b741-2d1e2e17002c/ENCFF542NWJ.bigBed\ labelFields none\ longLabel MCF-7 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF542NWJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF766CUM ENCSR004SUL Signal bigWig GM23338 originated from GM23248 DNase signal 2 736 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/54c211e5-bbe1-43cc-8482-3d606b364d4f/ENCFF766CUM.bigWig\ color 6,218,147\ longLabel GM23338 originated from GM23248 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004SUL Signal\ track wgEncodeReg4Epigenetics_ENCFF766CUM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF030SIX ENCSR676SRP - strand bigWig Uterus tissue female adult (59 years) - strand total RNA-seq signal 2 736 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/8a9562f5-2faa-4ada-bdac-36aa0a958991/ENCFF030SIX.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR676SRP - strand\ track wgEncodeReg4RnaSeq_ENCFF030SIX\ type bigWig\ visibility full\ encTfChipPkENCFF361RWX K562 SMARCA4 3 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF361RWX) 0 736 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in K562 from ENCODE 3 (ENCFF361RWX)\ parent encTfChipPk off\ shortLabel K562 SMARCA4 3\ subGroups cellType=K562 factor=SMARCA4\ track encTfChipPkENCFF361RWX\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_rev Tc:Mcf7ToHrg_04hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse 0 736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_rev Tc:Mcf7ToHrg_04hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse 1 736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep2.CNhs12663.13124-140G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep2_CNhs12663_13124-140G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13124-140G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep2_CNhs12663_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13124-140G1\ urlLabel FANTOM5 Details:\ ENCFF922WUL ENCFF922WUL bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF922WUL 2 737 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF922WUL.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF922WUL\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 91.2\ shortLabel ENCFF922WUL\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO660TGP dataType=typeH3k4me3\ track ENCFF922WUL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF948IKG ENCSR000DMQ Signal bigWig MCF-7 MYC ENCSR000DMQ signal 2 737 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/c086d6b7-fb6f-4a1d-8696-49eca645cfa3/ENCFF948IKG.bigWig\ color 65,171,173\ longLabel MCF-7 MYC ENCSR000DMQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMQ Signal\ track wgEncodeReg4TfChip_ENCFF948IKG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF537REO ENCSR004YQD Peak bigBed 5 Middle frontal area 46 tissue female adult 87 years H3K27ac peak 4 737 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ad59348d-69d5-4c40-b09f-b33c9080a9e7/ENCFF537REO.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 87 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004YQD Peak\ track wgEncodeReg4Epigenetics_ENCFF537REO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF340TAG ENCSR678TMV + strand bigWig Gastrocnemius medialis tissue female adult (53 years) + strand total RNA-seq signal 2 737 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b82c06b3-1f96-42fa-9b15-e81ee26344e1/ENCFF340TAG.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR678TMV + strand\ track wgEncodeReg4RnaSeq_ENCFF340TAG\ type bigWig\ visibility full\ encTfChipPkENCFF481TNF K562 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in K562 from ENCODE 3 (ENCFF481TNF) 0 737 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in K562 from ENCODE 3 (ENCFF481TNF)\ parent encTfChipPk off\ shortLabel K562 SMARCA5\ subGroups cellType=K562 factor=SMARCA5\ track encTfChipPkENCFF481TNF\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_fwd Tc:Mcf7ToHrg_04hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward 0 737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_fwd Tc:Mcf7ToHrg_04hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward 1 737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ ENCFF557GVR ENCFF557GVR bigWig Middle frontal area 46, male adult (86 years): (3) H3K4me3, ENCFF557GVR 2 738 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF557GVR.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (86 years): (3) H3K4me3, ENCFF557GVR\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 113.2\ shortLabel ENCFF557GVR\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__86_years_ biosampleType=tissue donor=ENCDO666UNK dataType=typeH3k4me3\ track ENCFF557GVR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF494VXA ENCSR000DMR Peak bigBed 5 MCF-7 CTCF peaks 4 738 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8c8a7ef4-0513-483b-b083-71be6032b60d/ENCFF494VXA.bigBed\ labelFields none\ longLabel MCF-7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF494VXA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF489BZS ENCSR004YQD Signal bigWig Middle frontal area 46 tissue female adult 87 years H3K27ac signal 2 738 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/72f962de-2e4f-4bf1-bd00-8317b4915dd8/ENCFF489BZS.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 87 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR004YQD Signal\ track wgEncodeReg4Epigenetics_ENCFF489BZS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF458SAI ENCSR678TMV - strand bigWig Gastrocnemius medialis tissue female adult (53 years) - strand total RNA-seq signal 2 738 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/49ba9d9a-8459-49b5-8beb-72b5153ee299/ENCFF458SAI.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR678TMV - strand\ track wgEncodeReg4RnaSeq_ENCFF458SAI\ type bigWig\ visibility full\ encTfChipPkENCFF308QHX K562 SMARCB1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCB1 in K562 from ENCODE 3 (ENCFF308QHX) 0 738 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCB1 in K562 from ENCODE 3 (ENCFF308QHX)\ parent encTfChipPk off\ shortLabel K562 SMARCB1\ subGroups cellType=K562 factor=SMARCB1\ track encTfChipPkENCFF308QHX\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_rev Tc:Mcf7ToHrg_04hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse 0 738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_rev Tc:Mcf7ToHrg_04hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse 1 738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2004hr%2c%20biol_rep3.CNhs12764.13190-141E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 04hr, biol_rep3_CNhs12764_13190-141E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13190-141E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_04hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG04hrBiolRep3_CNhs12764_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13190-141E4\ urlLabel FANTOM5 Details:\ ENCFF198NDW ENCFF198NDW bigWig Middle frontal area 46, female adult (88 years): (3) H3K4me3, ENCFF198NDW 2 739 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF198NDW.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (88 years): (3) H3K4me3, ENCFF198NDW\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 101.2\ shortLabel ENCFF198NDW\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__88_years_ biosampleType=tissue donor=ENCDO669IVL dataType=typeH3k4me3\ track ENCFF198NDW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF621UYZ ENCSR000DMR Signal bigWig MCF-7 CTCF ENCSR000DMR signal 2 739 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ab3fbf08-1904-4689-9e4a-f0fb14a6f16b/ENCFF621UYZ.bigWig\ color 65,171,173\ longLabel MCF-7 CTCF ENCSR000DMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMR Signal\ track wgEncodeReg4TfChip_ENCFF621UYZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF952LNQ ENCSR005BTU Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak 4 739 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/8bbb7b48-3ff7-45f8-a59a-1cc73fb200d4/ENCFF952LNQ.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005BTU Peak\ track wgEncodeReg4Epigenetics_ENCFF952LNQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF089RAP ENCSR680USE + strand bigWig Hair follicular keratinocyte male adult (55 years) + strand total RNA-seq signal 2 739 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/b8ebb3c0-5c26-4107-bd2d-022f4b3ed9ec/ENCFF089RAP.bigWig\ color 127,133,209\ longLabel Hair follicular keratinocyte male adult (55 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR680USE + strand\ track wgEncodeReg4RnaSeq_ENCFF089RAP\ type bigWig\ visibility full\ encTfChipPkENCFF751ZVX K562 SMARCC2 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCC2 in K562 from ENCODE 3 (ENCFF751ZVX) 0 739 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCC2 in K562 from ENCODE 3 (ENCFF751ZVX)\ parent encTfChipPk off\ shortLabel K562 SMARCC2\ subGroups cellType=K562 factor=SMARCC2\ track encTfChipPkENCFF751ZVX\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_fwd Tc:Mcf7ToHrg_05hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward 0 739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_fwd Tc:Mcf7ToHrg_05hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward 1 739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ ENCFF867WWB ENCFF867WWB bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF867WWB 2 740 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF867WWB.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF867WWB\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 90.2\ shortLabel ENCFF867WWB\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO672KST dataType=typeH3k4me3\ track ENCFF867WWB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF164XWP ENCSR000DMT Peak bigBed 5 MCF-7 POLR2A peaks 4 740 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f876388e-1cee-4560-999b-6a9638db5654/ENCFF164XWP.bigBed\ labelFields none\ longLabel MCF-7 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF164XWP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF724WVZ ENCSR005BTU Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal 2 740 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/e721b742-a904-4905-b48e-26479b5a9ff2/ENCFF724WVZ.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005BTU Signal\ track wgEncodeReg4Epigenetics_ENCFF724WVZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF283CNR ENCSR680USE - strand bigWig Hair follicular keratinocyte male adult (55 years) - strand total RNA-seq signal 2 740 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/1a1dabb6-e1b8-4862-a83d-5bc07040bd96/ENCFF283CNR.bigWig\ color 127,133,209\ longLabel Hair follicular keratinocyte male adult (55 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR680USE - strand\ track wgEncodeReg4RnaSeq_ENCFF283CNR\ type bigWig\ visibility full\ encTfChipPkENCFF435SZS K562 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in K562 from ENCODE 3 (ENCFF435SZS) 0 740 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in K562 from ENCODE 3 (ENCFF435SZS)\ parent encTfChipPk off\ shortLabel K562 SMARCE1\ subGroups cellType=K562 factor=SMARCE1\ track encTfChipPkENCFF435SZS\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_rev Tc:Mcf7ToHrg_05hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse 0 740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_rev Tc:Mcf7ToHrg_05hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse 1 740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep1.CNhs12446.13059-139H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep1_CNhs12446_13059-139H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13059-139H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep1_CNhs12446_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13059-139H8\ urlLabel FANTOM5 Details:\ ENCFF345SEW ENCFF345SEW bigWig Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (3) H3K4me3, ENCFF345SEW 2 741 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF345SEW.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (89 years) with mild cognitive impairment: (3) H3K4me3, ENCFF345SEW\ maxHeightPixels 30\ parent H3K4me3_view on\ priority 92.2\ shortLabel ENCFF345SEW\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__89_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO697SWU dataType=typeH3k4me3\ track ENCFF345SEW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF414SZG ENCSR000DMV Peak bigBed 5 MCF-7 CTCF peaks 4 741 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/beb3dc4d-3f08-4287-8aeb-d783a4a1222f/ENCFF414SZG.bigBed\ labelFields none\ longLabel MCF-7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF414SZG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF934SVJ ENCSR005BVE Peak bigBed 5 K562 treated with 1 μM SGC-CBP30 for 24 hours ATAC peak 4 741 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/68ce20fd-24f7-4db7-a68c-7fd7b401b271/ENCFF934SVJ.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM SGC-CBP30 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005BVE Peak\ track wgEncodeReg4Epigenetics_ENCFF934SVJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF401WKO ENCSR681ARR + strand bigWig Mucosa of descending colon tissue male adult (26 years) + strand total RNA-seq signal 2 741 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/ac1eed51-a052-4f6d-ab97-08f4a8c61c23/ENCFF401WKO.bigWig\ color 86,86,36\ longLabel Mucosa of descending colon tissue male adult (26 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR681ARR + strand\ track wgEncodeReg4RnaSeq_ENCFF401WKO\ type bigWig\ visibility full\ encTfChipPkENCFF175UEE K562 SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in K562 from ENCODE 3 (ENCFF175UEE) 0 741 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SMC3 in K562 from ENCODE 3 (ENCFF175UEE)\ parent encTfChipPk off\ shortLabel K562 SMC3\ subGroups cellType=K562 factor=SMC3\ track encTfChipPkENCFF175UEE\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_fwd Tc:Mcf7ToHrg_05hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward 0 741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_fwd Tc:Mcf7ToHrg_05hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward 1 741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ ENCFF617PMJ ENCFF617PMJ bigWig Middle frontal area 46, female adult (89 years): (3) H3K4me3, ENCFF617PMJ 2 742 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF617PMJ.bw\ color 255,0,0\ longLabel Middle frontal area 46, female adult (89 years): (3) H3K4me3, ENCFF617PMJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 102.2\ shortLabel ENCFF617PMJ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_female_adult__89_years_ biosampleType=tissue donor=ENCDO707TUE dataType=typeH3k4me3\ track ENCFF617PMJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF946JSU ENCSR000DMV Signal bigWig MCF-7 CTCF ENCSR000DMV signal 2 742 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/46b4f2ca-9ec1-4963-ba40-80802d2ed96d/ENCFF946JSU.bigWig\ color 65,171,173\ longLabel MCF-7 CTCF ENCSR000DMV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMV Signal\ track wgEncodeReg4TfChip_ENCFF946JSU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF722CFX ENCSR005BVE Signal bigWig K562 treated with 1 μM SGC-CBP30 for 24 hours ATAC signal 2 742 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/aed649a9-5d27-4206-8236-9dc09f6f43f1/ENCFF722CFX.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM SGC-CBP30 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005BVE Signal\ track wgEncodeReg4Epigenetics_ENCFF722CFX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF635LOC ENCSR681ARR - strand bigWig Mucosa of descending colon tissue male adult (26 years) - strand total RNA-seq signal 2 742 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/8a9e3b16-2abf-40e8-9328-eb2406aa096e/ENCFF635LOC.bigWig\ color 86,86,36\ longLabel Mucosa of descending colon tissue male adult (26 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR681ARR - strand\ track wgEncodeReg4RnaSeq_ENCFF635LOC\ type bigWig\ visibility full\ encTfChipPkENCFF206MJS K562 SNRNP70 narrowPeak Transcription Factor ChIP-seq Peaks of SNRNP70 in K562 from ENCODE 3 (ENCFF206MJS) 0 742 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SNRNP70 in K562 from ENCODE 3 (ENCFF206MJS)\ parent encTfChipPk off\ shortLabel K562 SNRNP70\ subGroups cellType=K562 factor=SNRNP70\ track encTfChipPkENCFF206MJS\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_rev Tc:Mcf7ToHrg_05hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse 0 742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_rev Tc:Mcf7ToHrg_05hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse 1 742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep2.CNhs12664.13125-140G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep2_CNhs12664_13125-140G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13125-140G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep2_CNhs12664_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13125-140G2\ urlLabel FANTOM5 Details:\ ENCFF730XOV ENCFF730XOV bigWig Middle frontal area 46, male adult (83 years): (3) H3K4me3, ENCFF730XOV 2 743 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF730XOV.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (83 years): (3) H3K4me3, ENCFF730XOV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 110.2\ shortLabel ENCFF730XOV\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__83_years_ biosampleType=tissue donor=ENCDO736YJH dataType=typeH3k4me3\ track ENCFF730XOV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF513FYD ENCSR000DMY Peak bigBed 5 D721Med CTCF peaks 4 743 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7c9701c4-f270-49a4-b1a5-3e0a5dd489f4/ENCFF513FYD.bigBed\ labelFields none\ longLabel D721Med CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF513FYD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF622JAI ENCSR005LPI Peak bigBed 5 Omental fat pad tissue male adult 54 years CTCF peak 4 743 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/9f4df400-30dd-4111-bd9a-f473e487f676/ENCFF622JAI.bigBed\ color 0,176,240\ labelFields none\ longLabel Omental fat pad tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005LPI Peak\ track wgEncodeReg4Epigenetics_ENCFF622JAI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF166WWA ENCSR687HJY + strand bigWig Thyroid gland tissue female adult (51 years) + strand total RNA-seq signal 2 743 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/95b09448-42ea-49d3-8e47-3405456f0ae7/ENCFF166WWA.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR687HJY + strand\ track wgEncodeReg4RnaSeq_ENCFF166WWA\ type bigWig\ visibility full\ encTfChipPkENCFF431STY K562 SOX6 narrowPeak Transcription Factor ChIP-seq Peaks of SOX6 in K562 from ENCODE 3 (ENCFF431STY) 0 743 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SOX6 in K562 from ENCODE 3 (ENCFF431STY)\ parent encTfChipPk off\ shortLabel K562 SOX6\ subGroups cellType=K562 factor=SOX6\ track encTfChipPkENCFF431STY\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_fwd Tc:Mcf7ToHrg_05hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward 0 743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_fwd Tc:Mcf7ToHrg_05hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward 1 743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ ENCFF878BKX ENCFF878BKX bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF878BKX 2 744 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF878BKX.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF878BKX\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 88.2\ shortLabel ENCFF878BKX\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO739EFE dataType=typeH3k4me3\ track ENCFF878BKX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF312UWU ENCSR000DMY Signal bigWig D721Med CTCF ENCSR000DMY signal 2 744 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/865ab9a6-0167-421f-927d-72fc6c6f84ca/ENCFF312UWU.bigWig\ color 155,155,18\ longLabel D721Med CTCF ENCSR000DMY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMY Signal\ track wgEncodeReg4TfChip_ENCFF312UWU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF610NJT ENCSR005LPI Signal bigWig Omental fat pad tissue male adult 54 years CTCF signal 2 744 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4b3ad1d4-dad2-4048-8c0f-a6bc762a9b75/ENCFF610NJT.bigWig\ color 0,176,240\ longLabel Omental fat pad tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005LPI Signal\ track wgEncodeReg4Epigenetics_ENCFF610NJT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF773GPK ENCSR687HJY - strand bigWig Thyroid gland tissue female adult (51 years) - strand total RNA-seq signal 2 744 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/2bfc3c96-35a5-404b-815d-0452b879522e/ENCFF773GPK.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR687HJY - strand\ track wgEncodeReg4RnaSeq_ENCFF773GPK\ type bigWig\ visibility full\ encTfChipPkENCFF452LDK K562 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in K562 from ENCODE 3 (ENCFF452LDK) 0 744 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in K562 from ENCODE 3 (ENCFF452LDK)\ parent encTfChipPk off\ shortLabel K562 SP1\ subGroups cellType=K562 factor=SP1\ track encTfChipPkENCFF452LDK\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_rev Tc:Mcf7ToHrg_05hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse 0 744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_rev Tc:Mcf7ToHrg_05hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse 1 744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2005hr%2c%20biol_rep3.CNhs12765.13191-141E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 05hr, biol_rep3_CNhs12765_13191-141E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13191-141E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_05hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG05hrBiolRep3_CNhs12765_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13191-141E5\ urlLabel FANTOM5 Details:\ ENCFF914PSJ ENCFF914PSJ bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (3) H3K4me3, ENCFF914PSJ 2 745 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF914PSJ.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (3) H3K4me3, ENCFF914PSJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 72.2\ shortLabel ENCFF914PSJ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO830KFO dataType=typeH3k4me3\ track ENCFF914PSJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF748RAW ENCSR000DMZ Peak bigBed 5 A549 POLR2A peaks 4 745 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3960e9c7-0cd7-4c29-8301-d80e8254d2b8/ENCFF748RAW.bigBed\ labelFields none\ longLabel A549 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF748RAW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF029MCE ENCSR005SXO Peak bigBed 5 OCI-LY7 H3K4me3 peak 4 745 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/0015db29-6e66-4bd5-b9b9-cea188fcc420/ENCFF029MCE.bigBed\ color 255,0,0\ longLabel OCI-LY7 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005SXO Peak\ track wgEncodeReg4Epigenetics_ENCFF029MCE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF334KVA ENCSR692DIM + strand bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) + strand total RNA-seq signal 2 745 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/d04ef616-749a-406f-91b0-07a1d0750675/ENCFF334KVA.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR692DIM + strand\ track wgEncodeReg4RnaSeq_ENCFF334KVA\ type bigWig\ visibility full\ encTfChipPkENCFF777MYW K562 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in K562 from ENCODE 3 (ENCFF777MYW) 0 745 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in K562 from ENCODE 3 (ENCFF777MYW)\ parent encTfChipPk off\ shortLabel K562 SREBF1\ subGroups cellType=K562 factor=SREBF1\ track encTfChipPkENCFF777MYW\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_fwd Tc:Mcf7ToHrg_06hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward 0 745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_fwd Tc:Mcf7ToHrg_06hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward 1 745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ ENCFF393NEJ ENCFF393NEJ bigWig Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (3) H3K4me3, ENCFF393NEJ 2 746 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF393NEJ.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (83 years) with mild cognitive impairment: (3) H3K4me3, ENCFF393NEJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 81.2\ shortLabel ENCFF393NEJ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__83_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO832DBZ dataType=typeH3k4me3\ track ENCFF393NEJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF774RVE ENCSR000DMZ Signal bigWig A549 POLR2A ENCSR000DMZ signal 2 746 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e0b0de49-a345-4616-a5c6-2270156b6397/ENCFF774RVE.bigWig\ color 130,163,45\ longLabel A549 POLR2A ENCSR000DMZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DMZ Signal\ track wgEncodeReg4TfChip_ENCFF774RVE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF630BQS ENCSR005SXO Signal bigWig OCI-LY7 H3K4me3 signal 2 746 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d6ed05ca-75b6-4b9c-ab71-c6dd4f515157/ENCFF630BQS.bigWig\ color 255,0,0\ longLabel OCI-LY7 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR005SXO Signal\ track wgEncodeReg4Epigenetics_ENCFF630BQS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF265DJC ENCSR692DIM - strand bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) - strand total RNA-seq signal 2 746 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/89738b4b-fe01-4bdc-9f69-69ebda6b3303/ENCFF265DJC.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult (30 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR692DIM - strand\ track wgEncodeReg4RnaSeq_ENCFF265DJC\ type bigWig\ visibility full\ encTfChipPkENCFF550VUN K562 SRSF7 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF7 in K562 from ENCODE 3 (ENCFF550VUN) 0 746 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SRSF7 in K562 from ENCODE 3 (ENCFF550VUN)\ parent encTfChipPk off\ shortLabel K562 SRSF7\ subGroups cellType=K562 factor=SRSF7\ track encTfChipPkENCFF550VUN\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_rev Tc:Mcf7ToHrg_06hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse 0 746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_rev Tc:Mcf7ToHrg_06hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse 1 746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep1.CNhs12447.13060-139H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep1_CNhs12447_13060-139H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13060-139H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep1_CNhs12447_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13060-139H9\ urlLabel FANTOM5 Details:\ ENCFF066MLC ENCFF066MLC bigWig Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (3) H3K4me3, ENCFF066MLC 2 747 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF066MLC.bw\ color 255,0,0\ longLabel Middle frontal area 46 (cognitive impairment), female adult (86 years) with Cognitive impairment: (3) H3K4me3, ENCFF066MLC\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 78.2\ shortLabel ENCFF066MLC\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__cognitive_impairment_-_female_adult__86_years__with_Cognitive_impairment biosampleType=tissue donor=ENCDO845GYA dataType=typeH3k4me3\ track ENCFF066MLC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF182TCQ ENCSR000DNA Peak bigBed 5 A549 CTCF peaks 4 747 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/1d3ee23b-a144-4639-9ede-cf4480f9c2c9/ENCFF182TCQ.bigBed\ labelFields none\ longLabel A549 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF182TCQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF658LFY ENCSR006DKF Peak bigBed 5 Brain microvascular endothelial cell DNase peak 4 747 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/570998e0-0300-437e-8ec3-3e7a1315d022/ENCFF658LFY.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain microvascular endothelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006DKF Peak\ track wgEncodeReg4Epigenetics_ENCFF658LFY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF092EMR ENCSR693CVD + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 747 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/24de941a-a186-4730-aaf9-4807608a41f7/ENCFF092EMR.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR693CVD + strand\ track wgEncodeReg4RnaSeq_ENCFF092EMR\ type bigWig\ visibility full\ encTfChipPkENCFF217HAW K562 SRSF9 narrowPeak Transcription Factor ChIP-seq Peaks of SRSF9 in K562 from ENCODE 3 (ENCFF217HAW) 0 747 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SRSF9 in K562 from ENCODE 3 (ENCFF217HAW)\ parent encTfChipPk off\ shortLabel K562 SRSF9\ subGroups cellType=K562 factor=SRSF9\ track encTfChipPkENCFF217HAW\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_fwd Tc:Mcf7ToHrg_06hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward 0 747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_fwd Tc:Mcf7ToHrg_06hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward 1 747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ ENCFF220KZL ENCFF220KZL bigWig Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (3) H3K4me3, ENCFF220KZL 2 748 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF220KZL.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (90 or above years) with Alzheimers disease: (3) H3K4me3, ENCFF220KZL\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 74.2\ shortLabel ENCFF220KZL\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__90_or_above_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO847KYQ dataType=typeH3k4me3\ track ENCFF220KZL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF050EWJ ENCSR000DNA Signal bigWig A549 CTCF ENCSR000DNA signal 2 748 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f457ffb7-28e1-44dd-8cea-1407c4c80ac6/ENCFF050EWJ.bigWig\ color 130,163,45\ longLabel A549 CTCF ENCSR000DNA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNA Signal\ track wgEncodeReg4TfChip_ENCFF050EWJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF472WAW ENCSR006DKF Signal bigWig Brain microvascular endothelial cell DNase signal 2 748 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/1c501d0c-b461-4d3f-b496-0e4ea2169a72/ENCFF472WAW.bigWig\ color 6,218,147\ longLabel Brain microvascular endothelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006DKF Signal\ track wgEncodeReg4Epigenetics_ENCFF472WAW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF714XJN ENCSR693CVD - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 748 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/0757a5b6-84cd-466e-b4ee-b64e049fa7f9/ENCFF714XJN.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR693CVD - strand\ track wgEncodeReg4RnaSeq_ENCFF714XJN\ type bigWig\ visibility full\ encTfChipPkENCFF646MXG K562 STAT1 1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF646MXG) 0 748 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF646MXG)\ parent encTfChipPk off\ shortLabel K562 STAT1 1\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF646MXG\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_rev Tc:Mcf7ToHrg_06hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse 0 748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_rev Tc:Mcf7ToHrg_06hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse 1 748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep2.CNhs12665.13126-140G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep2_CNhs12665_13126-140G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13126-140G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep2_CNhs12665_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13126-140G3\ urlLabel FANTOM5 Details:\ ENCFF100JXF ENCFF100JXF bigWig Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (3) H3K4me3, ENCFF100JXF 2 749 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF100JXF.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (89 years) with Alzheimers disease: (3) H3K4me3, ENCFF100JXF\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 73.2\ shortLabel ENCFF100JXF\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__89_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO853VGZ dataType=typeH3k4me3\ track ENCFF100JXF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF046PBT ENCSR000DNC Peak bigBed 5 Keratinocyte female CTCF peaks 4 749 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0a3381a2-efe2-4a0b-a3eb-c250eb601efa/ENCFF046PBT.bigBed\ labelFields none\ longLabel Keratinocyte female CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF046PBT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF851AWF ENCSR006IJP Peak bigBed 5 Lung tissue embryo 112 days DNase peak 4 749 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/ff58c49b-a515-4251-b644-73858a662c0a/ENCFF851AWF.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue embryo 112 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006IJP Peak\ track wgEncodeReg4Epigenetics_ENCFF851AWF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF927ANS ENCSR693KOP + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal 2 749 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/4f0b4234-ea66-43ea-b42a-ff0c6a529172/ENCFF927ANS.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR693KOP + strand\ track wgEncodeReg4RnaSeq_ENCFF927ANS\ type bigWig\ visibility full\ encTfChipPkENCFF747ICD K562 STAT1 2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF747ICD) 0 749 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF747ICD)\ parent encTfChipPk off\ shortLabel K562 STAT1 2\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF747ICD\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_fwd Tc:Mcf7ToHrg_06hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward 0 749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_fwd Tc:Mcf7ToHrg_06hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward 1 749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ ENCFF666VNK ENCFF666VNK bigWig Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF666VNK 2 750 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF666VNK.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), male adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF666VNK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 93.2\ shortLabel ENCFF666VNK\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_male_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO877NVF dataType=typeH3k4me3\ track ENCFF666VNK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF298JJU ENCSR000DNC Signal bigWig Keratinocyte female CTCF ENCSR000DNC signal 2 750 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/4f094fe7-78ed-404d-b89d-cbd317645642/ENCFF298JJU.bigWig\ color 127,133,209\ longLabel Keratinocyte female CTCF ENCSR000DNC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNC Signal\ track wgEncodeReg4TfChip_ENCFF298JJU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF631RJC ENCSR006IJP Signal bigWig Lung tissue embryo 112 days DNase signal 2 750 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/c9a4997a-1857-4bfc-9501-73dbd790f0be/ENCFF631RJC.bigWig\ color 6,218,147\ longLabel Lung tissue embryo 112 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006IJP Signal\ track wgEncodeReg4Epigenetics_ENCFF631RJC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF129IUV ENCSR693KOP - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal 2 750 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/e71ccbda-319c-497d-9f95-a67a7719ae7a/ENCFF129IUV.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR693KOP - strand\ track wgEncodeReg4RnaSeq_ENCFF129IUV\ type bigWig\ visibility full\ encTfChipPkENCFF431NLF K562 STAT1 3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF431NLF) 0 750 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT1 in K562 from ENCODE 3 (ENCFF431NLF)\ parent encTfChipPk off\ shortLabel K562 STAT1 3\ subGroups cellType=K562 factor=STAT1\ track encTfChipPkENCFF431NLF\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_rev Tc:Mcf7ToHrg_06hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse 0 750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_rev Tc:Mcf7ToHrg_06hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse 1 750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2006hr%2c%20biol_rep3.CNhs12766.13192-141E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 06hr, biol_rep3_CNhs12766_13192-141E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13192-141E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_06hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG06hrBiolRep3_CNhs12766_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13192-141E6\ urlLabel FANTOM5 Details:\ ENCFF586MLV ENCFF586MLV bigWig Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (3) H3K4me3, ENCFF586MLV 2 751 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF586MLV.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (74 years) with Alzheimers disease: (3) H3K4me3, ENCFF586MLV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 67.2\ shortLabel ENCFF586MLV\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__74_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO907CMO dataType=typeH3k4me3\ track ENCFF586MLV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF101CZV ENCSR000DND Peak bigBed 5 Pancreas tissue male adult (54 years) and male adult (60 years) CTCF peaks 4 751 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ed146764-12cb-4b9f-b7ad-23676410bfc8/ENCFF101CZV.bigBed\ labelFields none\ longLabel Pancreas tissue male adult (54 years) and male adult (60 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DND Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF101CZV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF782IKL ENCSR006IMH Peak bigBed 5 Stomach tissue female adult 53 years DNase peak 4 751 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/d5760029-6a5f-43bf-9321-38d51d179288/ENCFF782IKL.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006IMH Peak\ track wgEncodeReg4Epigenetics_ENCFF782IKL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF531DSA ENCSR693YZA + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 751 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/be9001eb-f6e4-4d6a-96f8-738c8a1b99bf/ENCFF531DSA.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR693YZA + strand\ track wgEncodeReg4RnaSeq_ENCFF531DSA\ type bigWig\ visibility full\ encTfChipPkENCFF204VQS K562 STAT2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT2 in K562 from ENCODE 3 (ENCFF204VQS) 0 751 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT2 in K562 from ENCODE 3 (ENCFF204VQS)\ parent encTfChipPk off\ shortLabel K562 STAT2\ subGroups cellType=K562 factor=STAT2\ track encTfChipPkENCFF204VQS\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_fwd Tc:Mcf7ToHrg_07hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward 0 751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_fwd Tc:Mcf7ToHrg_07hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward 1 751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ ENCFF507KAZ ENCFF507KAZ bigWig Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF507KAZ 2 752 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF507KAZ.bw\ color 255,0,0\ longLabel Middle frontal area 46 (mild cognitive impairment), female adult (90 or above years) with mild cognitive impairment: (3) H3K4me3, ENCFF507KAZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 84.2\ shortLabel ENCFF507KAZ\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__mild_cognitive_impairment_-_female_adult__90_or_above_years__with_mild_cognitive_impairment biosampleType=tissue donor=ENCDO915WZE dataType=typeH3k4me3\ track ENCFF507KAZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF876OHV ENCSR000DND Signal bigWig Pancreas tissue male adult (54 years) and male adult (60 years) CTCF ENCSR000DND signal 2 752 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f0308b14-8208-4b74-b254-084568f66ae6/ENCFF876OHV.bigWig\ color 175,100,41\ longLabel Pancreas tissue male adult (54 years) and male adult (60 years) CTCF ENCSR000DND signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DND Signal\ track wgEncodeReg4TfChip_ENCFF876OHV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF493HHP ENCSR006IMH Signal bigWig Stomach tissue female adult 53 years DNase signal 2 752 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/7d159bf1-0217-4b73-9c3c-8c803d1823ce/ENCFF493HHP.bigWig\ color 6,218,147\ longLabel Stomach tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006IMH Signal\ track wgEncodeReg4Epigenetics_ENCFF493HHP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF540QGL ENCSR693YZA - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 752 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/4d3ca468-3e65-4bf0-97d1-392fa219992a/ENCFF540QGL.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR693YZA - strand\ track wgEncodeReg4RnaSeq_ENCFF540QGL\ type bigWig\ visibility full\ encTfChipPkENCFF517IXK K562 STAT5A narrowPeak Transcription Factor ChIP-seq Peaks of STAT5A in K562 from ENCODE 3 (ENCFF517IXK) 0 752 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of STAT5A in K562 from ENCODE 3 (ENCFF517IXK)\ parent encTfChipPk off\ shortLabel K562 STAT5A\ subGroups cellType=K562 factor=STAT5A\ track encTfChipPkENCFF517IXK\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_rev Tc:Mcf7ToHrg_07hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse 0 752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_rev Tc:Mcf7ToHrg_07hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse 1 752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep1.CNhs12448.13061-139I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep1_CNhs12448_13061-139I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13061-139I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep1_CNhs12448_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13061-139I1\ urlLabel FANTOM5 Details:\ ENCFF220GPW ENCFF220GPW bigWig Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (3) H3K4me3, ENCFF220GPW 2 753 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF220GPW.bw\ color 255,0,0\ longLabel Middle frontal area 46 (Alzheimers disease), female adult (86 years) with Alzheimers disease: (3) H3K4me3, ENCFF220GPW\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 70.2\ shortLabel ENCFF220GPW\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46__Alzheimers_disease_-_female_adult__86_years__with_Alzheimers_disease biosampleType=tissue donor=ENCDO997SGX dataType=typeH3k4me3\ track ENCFF220GPW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF678RAG ENCSR000DNI Peak bigBed 5 Spleen tissue female adult (20 years) and female adult (30 years) CTCF peaks 4 753 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/7ac9cf4c-ae79-409d-b7b0-069493a8f59b/ENCFF678RAG.bigBed\ labelFields none\ longLabel Spleen tissue female adult (20 years) and female adult (30 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF678RAG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF076LCZ ENCSR006MAW Peak bigBed 5 Middle frontal area 46 tissue male adult 83 years DNase peak 4 753 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/f05ea91c-4ff0-4018-87dd-91ac9865f15a/ENCFF076LCZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006MAW Peak\ track wgEncodeReg4Epigenetics_ENCFF076LCZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF632MAZ ENCSR694AWV + strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 753 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/85d23c6c-df6d-4d9c-b502-43799ff4d06b/ENCFF632MAZ.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR694AWV + strand\ track wgEncodeReg4RnaSeq_ENCFF632MAZ\ type bigWig\ visibility full\ encTfChipPkENCFF856HYC K562 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in K562 from ENCODE 3 (ENCFF856HYC) 0 753 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in K562 from ENCODE 3 (ENCFF856HYC)\ parent encTfChipPk off\ shortLabel K562 SUZ12\ subGroups cellType=K562 factor=SUZ12\ track encTfChipPkENCFF856HYC\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_fwd Tc:Mcf7ToHrg_07hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward 0 753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_fwd Tc:Mcf7ToHrg_07hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward 1 753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ ENCFF580GFO ENCFF580GFO bigWig Middle frontal area 46, male adult (84 years): (3) H3K4me3, ENCFF580GFO 2 754 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF580GFO.bw\ color 255,0,0\ longLabel Middle frontal area 46, male adult (84 years): (3) H3K4me3, ENCFF580GFO\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 112.2\ shortLabel ENCFF580GFO\ subGroups organ=brain view=H3K4me3_view simpleBiosample=middle_frontal_area_46-_male_adult__84_years_ biosampleType=tissue donor=ENCDO999WDR dataType=typeH3k4me3\ track ENCFF580GFO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF659YSR ENCSR000DNI Signal bigWig Spleen tissue female adult (20 years) and female adult (30 years) CTCF ENCSR000DNI signal 2 754 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/0561d71d-979f-4e93-8c54-f60fd65bc2d6/ENCFF659YSR.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (20 years) and female adult (30 years) CTCF ENCSR000DNI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNI Signal\ track wgEncodeReg4TfChip_ENCFF659YSR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF163NDW ENCSR006MAW Signal bigWig Middle frontal area 46 tissue male adult 83 years DNase signal 2 754 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/a757c971-2f0f-45ac-8912-e9af47d06bba/ENCFF163NDW.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue male adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006MAW Signal\ track wgEncodeReg4Epigenetics_ENCFF163NDW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF760YVU ENCSR694AWV - strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 754 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/f4ae47da-67bd-4dfe-877c-5e5fed7c3c78/ENCFF760YVU.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR694AWV - strand\ track wgEncodeReg4RnaSeq_ENCFF760YVU\ type bigWig\ visibility full\ encTfChipPkENCFF710LLF K562 TAF15 narrowPeak Transcription Factor ChIP-seq Peaks of TAF15 in K562 from ENCODE 3 (ENCFF710LLF) 0 754 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF15 in K562 from ENCODE 3 (ENCFF710LLF)\ parent encTfChipPk off\ shortLabel K562 TAF15\ subGroups cellType=K562 factor=TAF15\ track encTfChipPkENCFF710LLF\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_rev Tc:Mcf7ToHrg_07hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse 0 754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_rev Tc:Mcf7ToHrg_07hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse 1 754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep2.CNhs12666.13127-140G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep2_CNhs12666_13127-140G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13127-140G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep2_CNhs12666_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13127-140G4\ urlLabel FANTOM5 Details:\ ENCFF935BFQ ENCFF935BFQ bigWig MCF-7: (3) H3K4me3, ENCFF935BFQ 2 755 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF935BFQ.bw\ color 255,0,0\ longLabel MCF-7: (3) H3K4me3, ENCFF935BFQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 65.2\ shortLabel ENCFF935BFQ\ subGroups organ=breast view=H3K4me3_view simpleBiosample=MCF-7 biosampleType=cell_line donor=ENCDO000AAE dataType=typeH3k4me3\ track ENCFF935BFQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF474DNH ENCSR000DNM Peak bigBed 5 GM12878 NFYB peaks 4 755 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/65004ca5-914b-4950-b82a-bc07565d36f0/ENCFF474DNH.bigBed\ labelFields none\ longLabel GM12878 NFYB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF474DNH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF184APG ENCSR006QLV Peak bigBed 5 Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac peak 4 755 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/28/52d95dc5-3fd9-4392-bc44-71bf6829adde/ENCFF184APG.bigBed\ color 181,145,0\ longLabel Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006QLV Peak\ track wgEncodeReg4Epigenetics_ENCFF184APG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF245PRB ENCSR696SMK + strand bigWig M059J + strand total RNA-seq signal 2 755 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/5b8dbdb7-0ac8-44ce-b333-f494242b1793/ENCFF245PRB.bigWig\ color 155,155,18\ longLabel M059J + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR696SMK + strand\ track wgEncodeReg4RnaSeq_ENCFF245PRB\ type bigWig\ visibility full\ encTfChipPkENCFF852NOL K562 TAF7 narrowPeak Transcription Factor ChIP-seq Peaks of TAF7 in K562 from ENCODE 3 (ENCFF852NOL) 0 755 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF7 in K562 from ENCODE 3 (ENCFF852NOL)\ parent encTfChipPk off\ shortLabel K562 TAF7\ subGroups cellType=K562 factor=TAF7\ track encTfChipPkENCFF852NOL\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_fwd Tc:Mcf7ToHrg_07hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward 0 755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_fwd Tc:Mcf7ToHrg_07hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward 1 755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ ENCFF278ZAD ENCFF278ZAD bigWig Breast epithelium, female adult (51 years): (3) H3K4me3, ENCFF278ZAD 2 756 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF278ZAD.bw\ color 255,0,0\ longLabel Breast epithelium, female adult (51 years): (3) H3K4me3, ENCFF278ZAD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 17.2\ shortLabel ENCFF278ZAD\ subGroups organ=breast view=H3K4me3_view simpleBiosample=breast_epithelium-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF278ZAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF992FDL ENCSR000DNM Signal bigWig GM12878 NFYB ENCSR000DNM signal 2 756 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/8fff7cbe-fd85-4176-8346-c7c96ab1f17e/ENCFF992FDL.bigWig\ color 254,75,173\ longLabel GM12878 NFYB ENCSR000DNM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNM Signal\ track wgEncodeReg4TfChip_ENCFF992FDL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF233LPC ENCSR006QLV Signal bigWig Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac signal 2 756 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/28/47af125e-5a76-4abb-9b95-01396f2d902e/ENCFF233LPC.bigWig\ color 181,145,0\ longLabel Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006QLV Signal\ track wgEncodeReg4Epigenetics_ENCFF233LPC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF170EAF ENCSR696SMK - strand bigWig M059J - strand total RNA-seq signal 2 756 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/ec8ee005-964c-4e62-b357-11a8a0dea989/ENCFF170EAF.bigWig\ color 155,155,18\ longLabel M059J - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR696SMK - strand\ track wgEncodeReg4RnaSeq_ENCFF170EAF\ type bigWig\ visibility full\ encTfChipPkENCFF223HDM K562 TAF9B narrowPeak Transcription Factor ChIP-seq Peaks of TAF9B in K562 from ENCODE 3 (ENCFF223HDM) 0 756 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAF9B in K562 from ENCODE 3 (ENCFF223HDM)\ parent encTfChipPk off\ shortLabel K562 TAF9B\ subGroups cellType=K562 factor=TAF9B\ track encTfChipPkENCFF223HDM\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_rev Tc:Mcf7ToHrg_07hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse 0 756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_rev Tc:Mcf7ToHrg_07hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse 1 756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2007hr%2c%20biol_rep3.CNhs12767.13193-141E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 07hr, biol_rep3_CNhs12767_13193-141E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13193-141E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_07hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG07hrBiolRep3_CNhs12767_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13193-141E7\ urlLabel FANTOM5 Details:\ ENCFF466YVQ ENCFF466YVQ bigWig Chondrocyte, female embryo (5 days): (3) H3K4me3, ENCFF466YVQ 2 757 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF466YVQ.bw\ color 255,0,0\ longLabel Chondrocyte, female embryo (5 days): (3) H3K4me3, ENCFF466YVQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 21.2\ shortLabel ENCFF466YVQ\ subGroups organ=connective_tissue view=H3K4me3_view simpleBiosample=chondrocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF466YVQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF718CBS ENCSR000DNN Peak bigBed 5 GM12878 NFYA peaks 4 757 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/a346095f-f6a9-4347-a258-277e53a03a62/ENCFF718CBS.bigBed\ labelFields none\ longLabel GM12878 NFYA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF718CBS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF274OLY ENCSR006TUH Peak bigBed 5 Adrenal gland tissue female adult 51 years H3K4me3 peak 4 757 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/3a121a47-bdc3-465c-bf25-2538d88e98f2/ENCFF274OLY.bigBed\ color 255,0,0\ longLabel Adrenal gland tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006TUH Peak\ track wgEncodeReg4Epigenetics_ENCFF274OLY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF087ORU ENCSR698RPL + strand bigWig HCT116 + strand total RNA-seq signal 2 757 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/e1d71b42-4ddf-42ce-985a-bbb4953a834a/ENCFF087ORU.bigWig\ color 86,86,36\ longLabel HCT116 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR698RPL + strand\ track wgEncodeReg4RnaSeq_ENCFF087ORU\ type bigWig\ visibility full\ encTfChipPkENCFF078OUD K562 TAL1 1 narrowPeak Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF078OUD) 0 757 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF078OUD)\ parent encTfChipPk off\ shortLabel K562 TAL1 1\ subGroups cellType=K562 factor=TAL1\ track encTfChipPkENCFF078OUD\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_fwd Tc:Mcf7ToHrg_08hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward 0 757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_fwd Tc:Mcf7ToHrg_08hrBr1+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward 1 757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr1+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ ENCFF760NUN ENCFF760NUN bigWig H1: (3) H3K4me3, ENCFF760NUN 2 758 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF760NUN.bw\ color 255,0,0\ longLabel H1: (3) H3K4me3, ENCFF760NUN\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 37.2\ shortLabel ENCFF760NUN\ subGroups organ=embryo view=H3K4me3_view simpleBiosample=H1 biosampleType=cell_line donor=ENCDO000AAW dataType=typeH3k4me3\ track ENCFF760NUN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF854TNJ ENCSR000DNR Peak bigBed 5 HeLa-S3 NFYB peaks 4 758 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/6cc159b6-b9ed-4639-abb8-102c97379ec6/ENCFF854TNJ.bigBed\ labelFields none\ longLabel HeLa-S3 NFYB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF854TNJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF672KET ENCSR006TUH Signal bigWig Adrenal gland tissue female adult 51 years H3K4me3 signal 2 758 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/a3eeeafc-d71b-4ee3-b2d6-280f79aedbd1/ENCFF672KET.bigWig\ color 255,0,0\ longLabel Adrenal gland tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006TUH Signal\ track wgEncodeReg4Epigenetics_ENCFF672KET\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF870WXZ ENCSR698RPL - strand bigWig HCT116 - strand total RNA-seq signal 2 758 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/2bfcc719-1767-428e-a02d-9fa8360d3bcc/ENCFF870WXZ.bigWig\ color 86,86,36\ longLabel HCT116 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR698RPL - strand\ track wgEncodeReg4RnaSeq_ENCFF870WXZ\ type bigWig\ visibility full\ encTfChipPkENCFF475LFH K562 TAL1 2 narrowPeak Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF475LFH) 0 758 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TAL1 in K562 from ENCODE 3 (ENCFF475LFH)\ parent encTfChipPk off\ shortLabel K562 TAL1 2\ subGroups cellType=K562 factor=TAL1\ track encTfChipPkENCFF475LFH\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_rev Tc:Mcf7ToHrg_08hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse 0 758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_rev Tc:Mcf7ToHrg_08hrBr1- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse 1 758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep1.CNhs12740.13062-139I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep1_CNhs12740_13062-139I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13062-139I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr1-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep1_CNhs12740_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13062-139I2\ urlLabel FANTOM5 Details:\ ENCFF179HBV ENCFF179HBV bigWig H9: (3) H3K4me3, ENCFF179HBV 2 759 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF179HBV.bw\ color 255,0,0\ longLabel H9: (3) H3K4me3, ENCFF179HBV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 38.2\ shortLabel ENCFF179HBV\ subGroups organ=embryo view=H3K4me3_view simpleBiosample=H9 biosampleType=cell_line donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF179HBV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF589IYL ENCSR000DNR Signal bigWig HeLa-S3 NFYB ENCSR000DNR signal 2 759 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/007bb083-001f-46b5-a098-b0dd8bd2639c/ENCFF589IYL.bigWig\ color 186,111,165\ longLabel HeLa-S3 NFYB ENCSR000DNR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNR Signal\ track wgEncodeReg4TfChip_ENCFF589IYL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF225FTY ENCSR006XED Peak bigBed 5 Left lung tissue female embryo 98 days DNase peak 4 759 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/f506453c-19a3-4cc8-9285-2aac4f9ed598/ENCFF225FTY.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006XED Peak\ track wgEncodeReg4Epigenetics_ENCFF225FTY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF854EBH ENCSR701TST + strand bigWig Prostate gland tissue male adult (54 years) + strand total RNA-seq signal 2 759 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/9ace680f-0df1-466e-913f-29d78f03e6f9/ENCFF854EBH.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR701TST + strand\ track wgEncodeReg4RnaSeq_ENCFF854EBH\ type bigWig\ visibility full\ encTfChipPkENCFF868SWL K562 TBL1XR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF868SWL) 0 759 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF868SWL)\ parent encTfChipPk off\ shortLabel K562 TBL1XR1 1\ subGroups cellType=K562 factor=TBL1XR1\ track encTfChipPkENCFF868SWL\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_fwd Tc:Mcf7ToHrg_08hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward 0 759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_fwd Tc:Mcf7ToHrg_08hrBr2+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward 1 759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr2+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ ENCFF300WXD ENCFF300WXD bigWig Endodermal cell, female embryo (5 days): (3) H3K4me3, ENCFF300WXD 2 760 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF300WXD.bw\ color 255,0,0\ longLabel Endodermal cell, female embryo (5 days): (3) H3K4me3, ENCFF300WXD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 25.2\ shortLabel ENCFF300WXD\ subGroups organ=embryo view=H3K4me3_view simpleBiosample=endodermal_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF300WXD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF016YWF ENCSR000DNS Peak bigBed 5 HeLa-S3 NFYA peaks 4 760 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/23d9ff88-ebf1-4227-93d7-03a195633721/ENCFF016YWF.bigBed\ labelFields none\ longLabel HeLa-S3 NFYA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF016YWF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF453XFY ENCSR006XED Signal bigWig Left lung tissue female embryo 98 days DNase signal 2 760 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/73dfd5a6-c293-4418-bfd9-97d63b71a229/ENCFF453XFY.bigWig\ color 6,218,147\ longLabel Left lung tissue female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006XED Signal\ track wgEncodeReg4Epigenetics_ENCFF453XFY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF160UJZ ENCSR701TST - strand bigWig Prostate gland tissue male adult (54 years) - strand total RNA-seq signal 2 760 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/db8cfbfe-758c-4677-972d-d2570dd1f556/ENCFF160UJZ.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR701TST - strand\ track wgEncodeReg4RnaSeq_ENCFF160UJZ\ type bigWig\ visibility full\ encTfChipPkENCFF239WFN K562 TBL1XR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF239WFN) 0 760 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TBL1XR1 in K562 from ENCODE 3 (ENCFF239WFN)\ parent encTfChipPk off\ shortLabel K562 TBL1XR1 2\ subGroups cellType=K562 factor=TBL1XR1\ track encTfChipPkENCFF239WFN\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_rev Tc:Mcf7ToHrg_08hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse 0 760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_rev Tc:Mcf7ToHrg_08hrBr2- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse 1 760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep2.CNhs12667.13128-140G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep2_CNhs12667_13128-140G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13128-140G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr2-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep2_CNhs12667_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13128-140G5\ urlLabel FANTOM5 Details:\ ENCFF543KTX ENCFF543KTX bigWig Endothelial cell, male adult (53 years): (3) H3K4me3, ENCFF543KTX 2 761 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF543KTX.bw\ color 255,0,0\ longLabel Endothelial cell, male adult (53 years): (3) H3K4me3, ENCFF543KTX\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 26.2\ shortLabel ENCFF543KTX\ subGroups organ=epithelium view=H3K4me3_view simpleBiosample=endothelial_cell-_male_adult__53_years_ biosampleType=in_vitro_differentiated_cells donor=ENCDO336AAA dataType=typeH3k4me3\ track ENCFF543KTX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF882QYK ENCSR000DNS Signal bigWig HeLa-S3 NFYA ENCSR000DNS signal 2 761 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/62fccd9b-845a-45d7-8b5b-32a80599863c/ENCFF882QYK.bigWig\ color 186,111,165\ longLabel HeLa-S3 NFYA ENCSR000DNS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNS Signal\ track wgEncodeReg4TfChip_ENCFF882QYK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF897RCI ENCSR006XFA Peak bigBed 5 Posterior cingulate gyrus tissue female adult 82 years DNase peak 4 761 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/bf0ffe16-ccb8-4bca-b744-14c272d2ae44/ENCFF897RCI.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006XFA Peak\ track wgEncodeReg4Epigenetics_ENCFF897RCI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF818CZX ENCSR706NYL + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 761 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/6efe6a5a-484d-497e-a2df-08a6b874afd7/ENCFF818CZX.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR706NYL + strand\ track wgEncodeReg4RnaSeq_ENCFF818CZX\ type bigWig\ visibility full\ encTfChipPkENCFF370YGS K562 TBP narrowPeak Transcription Factor ChIP-seq Peaks of TBP in K562 from ENCODE 3 (ENCFF370YGS) 0 761 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TBP in K562 from ENCODE 3 (ENCFF370YGS)\ parent encTfChipPk off\ shortLabel K562 TBP\ subGroups cellType=K562 factor=TBP\ track encTfChipPkENCFF370YGS\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_fwd Tc:Mcf7ToHrg_08hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward 0 761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_fwd Tc:Mcf7ToHrg_08hrBr3+ bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward 1 761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr3+\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=forward\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ ENCFF764HZI ENCFF764HZI bigWig Esophagus squamous epithelium, male adult (37 years): (3) H3K4me3, ENCFF764HZI 2 762 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF764HZI.bw\ color 255,0,0\ longLabel Esophagus squamous epithelium, male adult (37 years): (3) H3K4me3, ENCFF764HZI\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 28.2\ shortLabel ENCFF764HZI\ subGroups organ=esophagus view=H3K4me3_view simpleBiosample=esophagus_squamous_epithelium-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF764HZI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF777TAS ENCSR000DNU Peak bigBed 5 HeLa-S3 POLR3A peaks 4 762 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ce2a4e5d-ce51-452d-a0ff-7e97d76ae305/ENCFF777TAS.bigBed\ labelFields none\ longLabel HeLa-S3 POLR3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF777TAS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF372RPI ENCSR006XFA Signal bigWig Posterior cingulate gyrus tissue female adult 82 years DNase signal 2 762 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/4eea75ad-d6e2-4e84-8410-364a45f7daeb/ENCFF372RPI.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR006XFA Signal\ track wgEncodeReg4Epigenetics_ENCFF372RPI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF921IWC ENCSR706NYL - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 762 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/6c1a9273-7043-4e3a-8d56-58dc216d7acb/ENCFF921IWC.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR706NYL - strand\ track wgEncodeReg4RnaSeq_ENCFF921IWC\ type bigWig\ visibility full\ encTfChipPkENCFF952JIK K562 TCF12 1 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF952JIK) 0 762 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF952JIK)\ parent encTfChipPk off\ shortLabel K562 TCF12 1\ subGroups cellType=K562 factor=TCF12\ track encTfChipPkENCFF952JIK\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_rev Tc:Mcf7ToHrg_08hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse 0 762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Mcf7ToHrg_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_rev Tc:Mcf7ToHrg_08hrBr3- bigWig MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse 1 762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20HRG%2c%2008hr%2c%20biol_rep3.CNhs12768.13194-141E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to HRG, 08hr, biol_rep3_CNhs12768_13194-141E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13194-141E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Mcf7ToHrg_08hrBr3-\ subGroups sequenceTech=hCAGE category=MCF7_response_to_HRG strand=reverse\ track MCF7BreastCancerCellLineResponseToHRG08hrBiolRep3_CNhs12768_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13194-141E8\ urlLabel FANTOM5 Details:\ ENCFF879CSG ENCFF879CSG bigWig WERI-Rb-1: (3) H3K4me3, ENCFF879CSG 2 763 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF879CSG.bw\ color 255,0,0\ longLabel WERI-Rb-1: (3) H3K4me3, ENCFF879CSG\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 170.2\ shortLabel ENCFF879CSG\ subGroups organ=eye view=H3K4me3_view simpleBiosample=WERI-Rb-1 biosampleType=cell_line donor=ENCDO000ADT dataType=typeH3k4me3\ track ENCFF879CSG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF578NZS ENCSR000DNU Signal bigWig HeLa-S3 POLR3A ENCSR000DNU signal 2 763 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ada4d6ce-94cc-4b5d-af6f-88e007742d29/ENCFF578NZS.bigWig\ color 186,111,165\ longLabel HeLa-S3 POLR3A ENCSR000DNU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNU Signal\ track wgEncodeReg4TfChip_ENCFF578NZS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF844RCX ENCSR007HLH Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years H3K27ac peak 4 763 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/34f04e04-a051-4524-84be-4bfcdad0814e/ENCFF844RCX.bigBed\ color 181,145,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR007HLH Peak\ track wgEncodeReg4Epigenetics_ENCFF844RCX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF911IWQ ENCSR708VVE + strand bigWig Subcutaneous adipose tissue tissue male adult (37 years) + strand total RNA-seq signal 2 763 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/301375bb-0e57-4220-b4d0-24593758da7c/ENCFF911IWQ.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR708VVE + strand\ track wgEncodeReg4RnaSeq_ENCFF911IWQ\ type bigWig\ visibility full\ encTfChipPkENCFF912LXU K562 TCF12 2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF912LXU) 0 763 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF12 in K562 from ENCODE 3 (ENCFF912LXU)\ parent encTfChipPk off\ shortLabel K562 TCF12 2\ subGroups cellType=K562 factor=TCF12\ track encTfChipPkENCFF912LXU\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_fwd MscAdipogenicInduction_00hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward 0 763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_fwd MscAdipogenicInduction_00hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward 1 763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ ENCFF712FDJ ENCFF712FDJ bigWig Mesothelial cell of epicardium, female embryo (5 days): (3) H3K4me3, ENCFF712FDJ 2 764 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF712FDJ.bw\ color 255,0,0\ longLabel Mesothelial cell of epicardium, female embryo (5 days): (3) H3K4me3, ENCFF712FDJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 66.2\ shortLabel ENCFF712FDJ\ subGroups organ=heart view=H3K4me3_view simpleBiosample=mesothelial_cell_of_epicardium-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF712FDJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF144RTV ENCSR000DNY Peak bigBed 5 HeLa-S3 GTF3C2 peaks 4 764 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/be6f4e9e-af98-40a5-93bd-754592e61cf4/ENCFF144RTV.bigBed\ labelFields none\ longLabel HeLa-S3 GTF3C2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF144RTV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF966FLQ ENCSR007HLH Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years H3K27ac signal 2 764 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ccec8328-311a-4327-9309-9949c09764fc/ENCFF966FLQ.bigWig\ color 181,145,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR007HLH Signal\ track wgEncodeReg4Epigenetics_ENCFF966FLQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF749MRL ENCSR708VVE - strand bigWig Subcutaneous adipose tissue tissue male adult (37 years) - strand total RNA-seq signal 2 764 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/0134e1d2-365f-4fa9-8766-9b6efd83b49e/ENCFF749MRL.bigWig\ color 255,119,39\ longLabel Subcutaneous adipose tissue tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR708VVE - strand\ track wgEncodeReg4RnaSeq_ENCFF749MRL\ type bigWig\ visibility full\ encTfChipPkENCFF512IAI K562 TCF7 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7 in K562 from ENCODE 3 (ENCFF512IAI) 0 764 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF7 in K562 from ENCODE 3 (ENCFF512IAI)\ parent encTfChipPk off\ shortLabel K562 TCF7\ subGroups cellType=K562 factor=TCF7\ track encTfChipPkENCFF512IAI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_rev MscAdipogenicInduction_00hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse 0 764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_rev MscAdipogenicInduction_00hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse 1 764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep1.CNhs13337.13229-141I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep1_CNhs13337_13229-141I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13229-141I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep1_CNhs13337_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13229-141I7\ urlLabel FANTOM5 Details:\ ENCFF163VOI ENCFF163VOI bigWig Right atrium auricular region, female adult (51 years): (3) H3K4me3, ENCFF163VOI 2 765 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF163VOI.bw\ color 255,0,0\ longLabel Right atrium auricular region, female adult (51 years): (3) H3K4me3, ENCFF163VOI\ maxHeightPixels 30\ parent H3K4me3_view on\ priority 133.2\ shortLabel ENCFF163VOI\ subGroups organ=heart view=H3K4me3_view simpleBiosample=right_atrium_auricular_region-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF163VOI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF992VCO ENCSR000DNY Signal bigWig HeLa-S3 GTF3C2 ENCSR000DNY signal 2 765 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/7470de8e-96c9-4446-b80c-ee8987bd0fcd/ENCFF992VCO.bigWig\ color 186,111,165\ longLabel HeLa-S3 GTF3C2 ENCSR000DNY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNY Signal\ track wgEncodeReg4TfChip_ENCFF992VCO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF612YDG ENCSR007YOT Peak bigBed 5 GM23248 H3K27ac peak 4 765 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/21/4de7b06f-8569-43ff-bba5-d7a90c1cb101/ENCFF612YDG.bigBed\ color 181,145,0\ longLabel GM23248 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR007YOT Peak\ track wgEncodeReg4Epigenetics_ENCFF612YDG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF270EUJ ENCSR712BRU + strand bigWig H9 + strand total RNA-seq signal 2 765 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/93f68779-6d7d-41f8-baf2-37fd96e1b257/ENCFF270EUJ.bigWig\ color 118,158,101\ longLabel H9 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR712BRU + strand\ track wgEncodeReg4RnaSeq_ENCFF270EUJ\ type bigWig\ visibility full\ encTfChipPkENCFF547MLB K562 TEAD4 narrowPeak Transcription Factor ChIP-seq Peaks of TEAD4 in K562 from ENCODE 3 (ENCFF547MLB) 0 765 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TEAD4 in K562 from ENCODE 3 (ENCFF547MLB)\ parent encTfChipPk off\ shortLabel K562 TEAD4\ subGroups cellType=K562 factor=TEAD4\ track encTfChipPkENCFF547MLB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_fwd MscAdipogenicInduction_00hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward 0 765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_fwd MscAdipogenicInduction_00hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward 1 765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ ENCFF119FKH ENCFF119FKH bigWig Heart right ventricle, male adult (40 years): (3) H3K4me3, ENCFF119FKH 2 766 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF119FKH.bw\ color 255,0,0\ longLabel Heart right ventricle, male adult (40 years): (3) H3K4me3, ENCFF119FKH\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 47.2\ shortLabel ENCFF119FKH\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_right_ventricle-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeH3k4me3\ track ENCFF119FKH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF980NSF ENCSR000DNZ Peak bigBed 5 K562 ATF1 peaks 4 766 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/18809bce-bcdc-4059-84c6-766c45e4c5f1/ENCFF980NSF.bigBed\ labelFields none\ longLabel K562 ATF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF980NSF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF558IWG ENCSR007YOT Signal bigWig GM23248 H3K27ac signal 2 766 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/21/1e6cb148-ae75-404b-a5d7-c7e1e16e390e/ENCFF558IWG.bigWig\ color 181,145,0\ longLabel GM23248 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR007YOT Signal\ track wgEncodeReg4Epigenetics_ENCFF558IWG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF774QSB ENCSR712BRU - strand bigWig H9 - strand total RNA-seq signal 2 766 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/8f122023-517a-4325-9b1f-71330ea7795a/ENCFF774QSB.bigWig\ color 118,158,101\ longLabel H9 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR712BRU - strand\ track wgEncodeReg4RnaSeq_ENCFF774QSB\ type bigWig\ visibility full\ encTfChipPkENCFF130TPD K562 THAP1 narrowPeak Transcription Factor ChIP-seq Peaks of THAP1 in K562 from ENCODE 3 (ENCFF130TPD) 0 766 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of THAP1 in K562 from ENCODE 3 (ENCFF130TPD)\ parent encTfChipPk off\ shortLabel K562 THAP1\ subGroups cellType=K562 factor=THAP1\ track encTfChipPkENCFF130TPD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_rev MscAdipogenicInduction_00hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse 0 766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_rev MscAdipogenicInduction_00hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse 1 766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep2.CNhs13420.13230-141I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep2_CNhs13420_13230-141I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13230-141I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep2_CNhs13420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13230-141I8\ urlLabel FANTOM5 Details:\ ENCFF152PBB ENCFF152PBB bigWig Heart left ventricle, female adult (46 years): (3) H3K4me3, ENCFF152PBB 2 767 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF152PBB.bw\ color 255,0,0\ longLabel Heart left ventricle, female adult (46 years): (3) H3K4me3, ENCFF152PBB\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 40.2\ shortLabel ENCFF152PBB\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_left_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeH3k4me3\ track ENCFF152PBB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF271JYU ENCSR000DNZ Signal bigWig K562 ATF1 ENCSR000DNZ signal 2 767 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/389cc000-2d14-4ea3-9657-9851747a18be/ENCFF271JYU.bigWig\ color 254,75,173\ longLabel K562 ATF1 ENCSR000DNZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DNZ Signal\ track wgEncodeReg4TfChip_ENCFF271JYU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF686IRX ENCSR007ZSS Peak bigBed 5 Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K27ac peak 4 767 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/9c99d802-753c-4d3d-b775-8963dd384d9b/ENCFF686IRX.bigBed\ color 181,145,0\ longLabel Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR007ZSS Peak\ track wgEncodeReg4Epigenetics_ENCFF686IRX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF811FXS ENCSR712GOC + strand bigWig H1 + strand total RNA-seq signal 2 767 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/7838b1f4-f0f3-4e29-8147-2b08f62f6346/ENCFF811FXS.bigWig\ color 118,158,101\ longLabel H1 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR712GOC + strand\ track wgEncodeReg4RnaSeq_ENCFF811FXS\ type bigWig\ visibility full\ encTfChipPkENCFF309DMZ K562 THRA narrowPeak Transcription Factor ChIP-seq Peaks of THRA in K562 from ENCODE 3 (ENCFF309DMZ) 0 767 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of THRA in K562 from ENCODE 3 (ENCFF309DMZ)\ parent encTfChipPk off\ shortLabel K562 THRA\ subGroups cellType=K562 factor=THRA\ track encTfChipPkENCFF309DMZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_fwd MscAdipogenicInduction_00hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward 0 767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_fwd MscAdipogenicInduction_00hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward 1 767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ ENCFF654FHZ ENCFF654FHZ bigWig Heart right ventricle, female adult (46 years): (3) H3K4me3, ENCFF654FHZ 2 768 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF654FHZ.bw\ color 255,0,0\ longLabel Heart right ventricle, female adult (46 years): (3) H3K4me3, ENCFF654FHZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 45.2\ shortLabel ENCFF654FHZ\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_right_ventricle-_female_adult__46_years_ biosampleType=tissue donor=ENCDO411EVD dataType=typeH3k4me3\ track ENCFF654FHZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF199GSZ ENCSR000DOA Peak bigBed 5 K562 CCNT2 peaks 4 768 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c6295a42-8902-47f9-8120-976b86c9f783/ENCFF199GSZ.bigBed\ labelFields none\ longLabel K562 CCNT2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF199GSZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF804XRL ENCSR007ZSS Signal bigWig Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K27ac signal 2 768 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d46afebf-ab03-4147-8ac4-f7a00664ec16/ENCFF804XRL.bigWig\ color 181,145,0\ longLabel Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR007ZSS Signal\ track wgEncodeReg4Epigenetics_ENCFF804XRL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF727SUX ENCSR712GOC - strand bigWig H1 - strand total RNA-seq signal 2 768 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/9bedb84f-91b1-4759-bf38-7a0701695fd1/ENCFF727SUX.bigWig\ color 118,158,101\ longLabel H1 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR712GOC - strand\ track wgEncodeReg4RnaSeq_ENCFF727SUX\ type bigWig\ visibility full\ encTfChipPkENCFF063NXI K562 TRIM24 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF063NXI) 0 768 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF063NXI)\ parent encTfChipPk off\ shortLabel K562 TRIM24 1\ subGroups cellType=K562 factor=TRIM24\ track encTfChipPkENCFF063NXI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_rev MscAdipogenicInduction_00hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse 0 768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_rev MscAdipogenicInduction_00hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse 1 768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr00min%2c%20biol_rep3.CNhs13421.13231-141I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr00min, biol_rep3_CNhs13421_13231-141I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13231-141I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr00minBiolRep3_CNhs13421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13231-141I9\ urlLabel FANTOM5 Details:\ ENCFF538YZL ENCFF538YZL bigWig Heart right ventricle, male adult (69 years): (3) H3K4me3, ENCFF538YZL 2 769 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF538YZL.bw\ color 255,0,0\ longLabel Heart right ventricle, male adult (69 years): (3) H3K4me3, ENCFF538YZL\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 51.2\ shortLabel ENCFF538YZL\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_right_ventricle-_male_adult__69_years_ biosampleType=tissue donor=ENCDO477WED dataType=typeH3k4me3\ track ENCFF538YZL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF358NKR ENCSR000DOA Signal bigWig K562 CCNT2 ENCSR000DOA signal 2 769 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/95fe8bf3-c56e-4b2c-878a-68ccffc19380/ENCFF358NKR.bigWig\ color 254,75,173\ longLabel K562 CCNT2 ENCSR000DOA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOA Signal\ track wgEncodeReg4TfChip_ENCFF358NKR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF560SPI ENCSR009KWQ Peak bigBed 5 BE2C DNase peak 4 769 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/9017f2d7-1aac-4491-ac81-eb6a042dd591/ENCFF560SPI.bigBed\ color 6,218,147\ labelFields none\ longLabel BE2C DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR009KWQ Peak\ track wgEncodeReg4Epigenetics_ENCFF560SPI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF010VSY ENCSR714CHF + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 + strand total RNA-seq signal 2 769 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/ceda684f-cd1d-469f-812f-2b614ed40041/ENCFF010VSY.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR714CHF + strand\ track wgEncodeReg4RnaSeq_ENCFF010VSY\ type bigWig\ visibility full\ encTfChipPkENCFF950TOJ K562 TRIM24 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF950TOJ) 0 769 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM24 in K562 from ENCODE 3 (ENCFF950TOJ)\ parent encTfChipPk off\ shortLabel K562 TRIM24 2\ subGroups cellType=K562 factor=TRIM24\ track encTfChipPkENCFF950TOJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_fwd MscAdipogenicInduction_00hr15minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward 0 769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_fwd MscAdipogenicInduction_00hr15minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward 1 769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ ENCFF237QAL ENCFF237QAL bigWig Left ventricle myocardium inferior, male adult (60 years): (3) H3K4me3, ENCFF237QAL 2 770 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF237QAL.bw\ color 255,0,0\ longLabel Left ventricle myocardium inferior, male adult (60 years): (3) H3K4me3, ENCFF237QAL\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 62.2\ shortLabel ENCFF237QAL\ subGroups organ=heart view=H3K4me3_view simpleBiosample=left_ventricle_myocardium_inferior-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeH3k4me3\ track ENCFF237QAL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF083BIJ ENCSR000DOB Peak bigBed 5 K562 HMGN3 peaks 4 770 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/864f3a20-d017-43be-962c-cc3b6bce368d/ENCFF083BIJ.bigBed\ labelFields none\ longLabel K562 HMGN3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF083BIJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF721VIJ ENCSR009KWQ Signal bigWig BE2C DNase signal 2 770 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/5d58b828-c9bc-4d9a-b042-e6b91ede0293/ENCFF721VIJ.bigWig\ color 6,218,147\ longLabel BE2C DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR009KWQ Signal\ track wgEncodeReg4Epigenetics_ENCFF721VIJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF359DBV ENCSR714CHF - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 - strand total RNA-seq signal 2 770 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/f79d0c0f-286c-4801-812d-48508857c67e/ENCFF359DBV.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens SMARCA5 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR714CHF - strand\ track wgEncodeReg4RnaSeq_ENCFF359DBV\ type bigWig\ visibility full\ encTfChipPkENCFF168KHS K562 TRIM28 1 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF168KHS) 0 770 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF168KHS)\ parent encTfChipPk off\ shortLabel K562 TRIM28 1\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF168KHS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_rev MscAdipogenicInduction_00hr15minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse 0 770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_rev MscAdipogenicInduction_00hr15minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse 1 770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep1.CNhs13422.13232-142A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep1_CNhs13422_13232-142A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13232-142A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep1_CNhs13422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13232-142A1\ urlLabel FANTOM5 Details:\ ENCFF646DAW ENCFF646DAW bigWig Right atrium auricular region, female adult (53 years): (3) H3K4me3, ENCFF646DAW 2 771 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF646DAW.bw\ color 255,0,0\ longLabel Right atrium auricular region, female adult (53 years): (3) H3K4me3, ENCFF646DAW\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 134.2\ shortLabel ENCFF646DAW\ subGroups organ=heart view=H3K4me3_view simpleBiosample=right_atrium_auricular_region-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF646DAW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF614MZM ENCSR000DOB Signal bigWig K562 HMGN3 ENCSR000DOB signal 2 771 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/9a0c97ac-3ead-4aa3-89fb-3949cd1e93a3/ENCFF614MZM.bigWig\ color 254,75,173\ longLabel K562 HMGN3 ENCSR000DOB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOB Signal\ track wgEncodeReg4TfChip_ENCFF614MZM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF826VDY ENCSR009MDC Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2 DNase peak 4 771 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/04/530ecfb3-7887-498c-bde9-d8020d4b8f90/ENCFF826VDY.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR009MDC Peak\ track wgEncodeReg4Epigenetics_ENCFF826VDY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF350OVE ENCSR718RTN + strand bigWig Lower lobe of left lung tissue female adult (59 years) + strand total RNA-seq signal 2 771 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/616069e4-0f40-46a9-94c4-06e66aaeedad/ENCFF350OVE.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR718RTN + strand\ track wgEncodeReg4RnaSeq_ENCFF350OVE\ type bigWig\ visibility full\ encTfChipPkENCFF996AMX K562 TRIM28 2 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF996AMX) 0 771 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF996AMX)\ parent encTfChipPk off\ shortLabel K562 TRIM28 2\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF996AMX\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_fwd MscAdipogenicInduction_00hr15minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward 0 771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_fwd MscAdipogenicInduction_00hr15minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward 1 771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ ENCFF651XRK ENCFF651XRK bigWig Heart left ventricle, female adult (53 years): (3) H3K4me3, ENCFF651XRK 2 772 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF651XRK.bw\ color 255,0,0\ longLabel Heart left ventricle, female adult (53 years): (3) H3K4me3, ENCFF651XRK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 41.2\ shortLabel ENCFF651XRK\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_left_ventricle-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF651XRK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF396ZJP ENCSR000DOD Peak bigBed 5 K562 GTF3C2 peaks 4 772 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/9e80e850-91de-4766-9b7a-d8235f8d372e/ENCFF396ZJP.bigBed\ labelFields none\ longLabel K562 GTF3C2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF396ZJP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF040POR ENCSR009MDC Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2 DNase signal 2 772 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/04/8f035b6f-b1e6-4ecd-a9de-72fed7efe4ed/ENCFF040POR.bigWig\ color 6,218,147\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads , 10 ng/mL Interleukin-2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR009MDC Signal\ track wgEncodeReg4Epigenetics_ENCFF040POR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF829IIG ENCSR718RTN - strand bigWig Lower lobe of left lung tissue female adult (59 years) - strand total RNA-seq signal 2 772 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/f2c7629b-0f04-4d23-92cb-ef4b1ff5ca3b/ENCFF829IIG.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR718RTN - strand\ track wgEncodeReg4RnaSeq_ENCFF829IIG\ type bigWig\ visibility full\ encTfChipPkENCFF623ELO K562 TRIM28 3 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF623ELO) 0 772 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIM28 in K562 from ENCODE 3 (ENCFF623ELO)\ parent encTfChipPk off\ shortLabel K562 TRIM28 3\ subGroups cellType=K562 factor=TRIM28\ track encTfChipPkENCFF623ELO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_rev MscAdipogenicInduction_00hr15minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse 0 772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_rev MscAdipogenicInduction_00hr15minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse 1 772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep2.CNhs13423.13233-142A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep2_CNhs13423_13233-142A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13233-142A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep2_CNhs13423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13233-142A2\ urlLabel FANTOM5 Details:\ ENCFF330KOM ENCFF330KOM bigWig Heart right ventricle, male adult (61 years): (3) H3K4me3, ENCFF330KOM 2 773 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF330KOM.bw\ color 255,0,0\ longLabel Heart right ventricle, male adult (61 years): (3) H3K4me3, ENCFF330KOM\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 49.2\ shortLabel ENCFF330KOM\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_right_ventricle-_male_adult__61_years_ biosampleType=tissue donor=ENCDO808ASZ dataType=typeH3k4me3\ track ENCFF330KOM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF604DDU ENCSR000DOD Signal bigWig K562 GTF3C2 ENCSR000DOD signal 2 773 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/292a36af-3392-4c37-a5fa-394bb6a1d4ac/ENCFF604DDU.bigWig\ color 254,75,173\ longLabel K562 GTF3C2 ENCSR000DOD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOD Signal\ track wgEncodeReg4TfChip_ENCFF604DDU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF051RPA ENCSR010SZN Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 773 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/16/6720662a-cf29-4f78-af2c-db72b6fb44cc/ENCFF051RPA.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR010SZN Peak\ track wgEncodeReg4Epigenetics_ENCFF051RPA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF003NFE ENCSR718YUW + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (85 years) + strand total RNA-seq signal 2 773 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/e9eef872-28b5-417a-a2a4-e8bf84ea8703/ENCFF003NFE.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (85 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR718YUW + strand\ track wgEncodeReg4RnaSeq_ENCFF003NFE\ type bigWig\ visibility full\ encTfChipPkENCFF534VQL K562 TRIP13 narrowPeak Transcription Factor ChIP-seq Peaks of TRIP13 in K562 from ENCODE 3 (ENCFF534VQL) 0 773 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of TRIP13 in K562 from ENCODE 3 (ENCFF534VQL)\ parent encTfChipPk off\ shortLabel K562 TRIP13\ subGroups cellType=K562 factor=TRIP13\ track encTfChipPkENCFF534VQL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_fwd MscAdipogenicInduction_00hr15minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward 0 773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_fwd MscAdipogenicInduction_00hr15minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward 1 773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ ENCFF614FJF ENCFF614FJF bigWig Heart left ventricle, female adult (59 years): (3) H3K4me3, ENCFF614FJF 2 774 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF614FJF.bw\ color 255,0,0\ longLabel Heart left ventricle, female adult (59 years): (3) H3K4me3, ENCFF614FJF\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 43.2\ shortLabel ENCFF614FJF\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_left_ventricle-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k4me3\ track ENCFF614FJF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF716QMI ENCSR000DOE Peak bigBed 5 K562 GTF2B peaks 4 774 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a27cab4c-fd53-402a-b20c-b2db9e4a96e5/ENCFF716QMI.bigBed\ labelFields none\ longLabel K562 GTF2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF716QMI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF441JLG ENCSR010SZN Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 774 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/16/f31abfe6-7b27-4ebf-8175-1cf7fb765b16/ENCFF441JLG.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR010SZN Signal\ track wgEncodeReg4Epigenetics_ENCFF441JLG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF303HVE ENCSR718YUW - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (85 years) - strand total RNA-seq signal 2 774 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/a9d1f3aa-e21e-4b14-9d3c-cc8161391ec9/ENCFF303HVE.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (85 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR718YUW - strand\ track wgEncodeReg4RnaSeq_ENCFF303HVE\ type bigWig\ visibility full\ encTfChipPkENCFF482DRO K562 U2AF1 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF1 in K562 from ENCODE 3 (ENCFF482DRO) 0 774 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of U2AF1 in K562 from ENCODE 3 (ENCFF482DRO)\ parent encTfChipPk off\ shortLabel K562 U2AF1\ subGroups cellType=K562 factor=U2AF1\ track encTfChipPkENCFF482DRO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_rev MscAdipogenicInduction_00hr15minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse 0 774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_rev MscAdipogenicInduction_00hr15minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse 1 774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr15min%2c%20biol_rep3.CNhs13424.13234-142A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr15min, biol_rep3_CNhs13424_13234-142A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13234-142A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr15minBiolRep3_CNhs13424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13234-142A3\ urlLabel FANTOM5 Details:\ ENCFF446ELY ENCFF446ELY bigWig Heart right ventricle, female adult (56 years): (3) H3K4me3, ENCFF446ELY 2 775 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF446ELY.bw\ color 255,0,0\ longLabel Heart right ventricle, female adult (56 years): (3) H3K4me3, ENCFF446ELY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 46.2\ shortLabel ENCFF446ELY\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_right_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeH3k4me3\ track ENCFF446ELY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF856EMT ENCSR000DOE Signal bigWig K562 GTF2B ENCSR000DOE signal 2 775 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1b916011-1bdb-4d21-8730-ba8a575e116f/ENCFF856EMT.bigWig\ color 254,75,173\ longLabel K562 GTF2B ENCSR000DOE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOE Signal\ track wgEncodeReg4TfChip_ENCFF856EMT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF225NNA ENCSR010TMX Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak 4 775 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/95d49b7c-f28a-422c-8c0e-6a7beeec2a03/ENCFF225NNA.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR010TMX Peak\ track wgEncodeReg4Epigenetics_ENCFF225NNA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF597SVD ENCSR719PXC + strand bigWig Ascending aorta tissue female adult (53 years) + strand total RNA-seq signal 2 775 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b4209fbd-3b14-4705-9e38-9bb028beb453/ENCFF597SVD.bigWig\ color 255,37,41\ longLabel Ascending aorta tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR719PXC + strand\ track wgEncodeReg4RnaSeq_ENCFF597SVD\ type bigWig\ visibility full\ encTfChipPkENCFF134HBP K562 U2AF2 narrowPeak Transcription Factor ChIP-seq Peaks of U2AF2 in K562 from ENCODE 3 (ENCFF134HBP) 0 775 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of U2AF2 in K562 from ENCODE 3 (ENCFF134HBP)\ parent encTfChipPk off\ shortLabel K562 U2AF2\ subGroups cellType=K562 factor=U2AF2\ track encTfChipPkENCFF134HBP\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_fwd MscAdipogenicInduction_00hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward 0 775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_fwd MscAdipogenicInduction_00hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward 1 775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ ENCFF869EMQ ENCFF869EMQ bigWig Heart left ventricle, female adult (56 years): (3) H3K4me3, ENCFF869EMQ 2 776 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF869EMQ.bw\ color 255,0,0\ longLabel Heart left ventricle, female adult (56 years): (3) H3K4me3, ENCFF869EMQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 42.2\ shortLabel ENCFF869EMQ\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_left_ventricle-_female_adult__56_years_ biosampleType=tissue donor=ENCDO907YUG dataType=typeH3k4me3\ track ENCFF869EMQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF611FFO ENCSR000DOG Peak bigBed 5 K562 ATF3 peaks 4 776 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/2968506d-32f2-4da4-a4a6-e5caed4be18c/ENCFF611FFO.bigBed\ labelFields none\ longLabel K562 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF611FFO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF968KNN ENCSR010TMX Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal 2 776 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/5d75ded9-42eb-49e4-8aff-05104667b88d/ENCFF968KNN.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR010TMX Signal\ track wgEncodeReg4Epigenetics_ENCFF968KNN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF314DVA ENCSR719PXC - strand bigWig Ascending aorta tissue female adult (53 years) - strand total RNA-seq signal 2 776 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/7be61031-cc1f-4b01-b7fc-b9ccc37381c4/ENCFF314DVA.bigWig\ color 255,37,41\ longLabel Ascending aorta tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR719PXC - strand\ track wgEncodeReg4RnaSeq_ENCFF314DVA\ type bigWig\ visibility full\ encTfChipPkENCFF345RRM K562 UBTF 1 narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF345RRM) 0 776 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF345RRM)\ parent encTfChipPk off\ shortLabel K562 UBTF 1\ subGroups cellType=K562 factor=UBTF\ track encTfChipPkENCFF345RRM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_rev MscAdipogenicInduction_00hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse 0 776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_rev MscAdipogenicInduction_00hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse 1 776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep1.CNhs13425.13235-142A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep1_CNhs13425_13235-142A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13235-142A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep1_CNhs13425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13235-142A4\ urlLabel FANTOM5 Details:\ ENCFF663EZB ENCFF663EZB bigWig Heart right ventricle, male adult (66 years): (3) H3K4me3, ENCFF663EZB 2 777 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF663EZB.bw\ color 255,0,0\ longLabel Heart right ventricle, male adult (66 years): (3) H3K4me3, ENCFF663EZB\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 50.2\ shortLabel ENCFF663EZB\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_right_ventricle-_male_adult__66_years_ biosampleType=tissue donor=ENCDO926KEV dataType=typeH3k4me3\ track ENCFF663EZB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF840BJJ ENCSR000DOG Signal bigWig K562 ATF3 ENCSR000DOG signal 2 777 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a752100d-2557-4d32-99f7-86325854629b/ENCFF840BJJ.bigWig\ color 254,75,173\ longLabel K562 ATF3 ENCSR000DOG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOG Signal\ track wgEncodeReg4TfChip_ENCFF840BJJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF889QPF ENCSR010ZMK Peak bigBed 5 Muscle of back tissue female embryo 113 days DNase peak 4 777 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/aadb721b-6169-4a6c-93f3-66422c3d9117/ENCFF889QPF.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue female embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR010ZMK Peak\ track wgEncodeReg4Epigenetics_ENCFF889QPF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF292PFL ENCSR727DPU + strand bigWig Heart right ventricle tissue female adult (56 years) + strand total RNA-seq signal 2 777 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/e0e79cb7-7d14-4e80-ba40-eed9e080c709/ENCFF292PFL.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (56 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR727DPU + strand\ track wgEncodeReg4RnaSeq_ENCFF292PFL\ type bigWig\ visibility full\ encTfChipPkENCFF403TAF K562 UBTF 2 narrowPeak Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF403TAF) 0 777 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of UBTF in K562 from ENCODE 3 (ENCFF403TAF)\ parent encTfChipPk off\ shortLabel K562 UBTF 2\ subGroups cellType=K562 factor=UBTF\ track encTfChipPkENCFF403TAF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_fwd MscAdipogenicInduction_00hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward 0 777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_fwd MscAdipogenicInduction_00hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward 1 777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ ENCFF155GED ENCFF155GED bigWig Heart left ventricle, male adult (43 years): (3) H3K4me3, ENCFF155GED 2 778 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF155GED.bw\ color 255,0,0\ longLabel Heart left ventricle, male adult (43 years): (3) H3K4me3, ENCFF155GED\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 44.2\ shortLabel ENCFF155GED\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_left_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeH3k4me3\ track ENCFF155GED\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF380JOG ENCSR000DOH Peak bigBed 5 K562 SIRT6 peaks 4 778 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/c9cf89d6-8f78-4c6f-994a-88c6aa1e12d1/ENCFF380JOG.bigBed\ labelFields none\ longLabel K562 SIRT6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF380JOG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF489HQO ENCSR010ZMK Signal bigWig Muscle of back tissue female embryo 113 days DNase signal 2 778 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/6f75ccc9-1331-470e-85e1-3b2ae9d8185f/ENCFF489HQO.bigWig\ color 6,218,147\ longLabel Muscle of back tissue female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR010ZMK Signal\ track wgEncodeReg4Epigenetics_ENCFF489HQO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF118YUJ ENCSR727DPU - strand bigWig Heart right ventricle tissue female adult (56 years) - strand total RNA-seq signal 2 778 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/b69e2f35-3dcf-4e66-a57c-8f5098a97257/ENCFF118YUJ.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (56 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR727DPU - strand\ track wgEncodeReg4RnaSeq_ENCFF118YUJ\ type bigWig\ visibility full\ encTfChipPkENCFF425FVY K562 USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in K562 from ENCODE 3 (ENCFF425FVY) 0 778 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in K562 from ENCODE 3 (ENCFF425FVY)\ parent encTfChipPk off\ shortLabel K562 USF2\ subGroups cellType=K562 factor=USF2\ track encTfChipPkENCFF425FVY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_rev MscAdipogenicInduction_00hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse 0 778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_rev MscAdipogenicInduction_00hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse 1 778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep2.CNhs13426.13236-142A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep2_CNhs13426_13236-142A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13236-142A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep2_CNhs13426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13236-142A5\ urlLabel FANTOM5 Details:\ ENCFF454ERF ENCFF454ERF bigWig Heart right ventricle, male adult (43 years): (3) H3K4me3, ENCFF454ERF 2 779 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF454ERF.bw\ color 255,0,0\ longLabel Heart right ventricle, male adult (43 years): (3) H3K4me3, ENCFF454ERF\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 48.2\ shortLabel ENCFF454ERF\ subGroups organ=heart view=H3K4me3_view simpleBiosample=heart_right_ventricle-_male_adult__43_years_ biosampleType=tissue donor=ENCDO967KID dataType=typeH3k4me3\ track ENCFF454ERF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF315WSH ENCSR000DOH Signal bigWig K562 SIRT6 ENCSR000DOH signal 2 779 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/fa4492dc-5327-4177-bd6d-2d6846dac428/ENCFF315WSH.bigWig\ color 254,75,173\ longLabel K562 SIRT6 ENCSR000DOH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOH Signal\ track wgEncodeReg4TfChip_ENCFF315WSH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF398JFP ENCSR011BHU Peak bigBed 5 Middle frontal area 46 tissue female adult 84 years H3K27ac peak 4 779 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/f43622ff-d736-4884-8505-2238373bfe46/ENCFF398JFP.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 84 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011BHU Peak\ track wgEncodeReg4Epigenetics_ENCFF398JFP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF117MQV ENCSR728FFT + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal 2 779 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/3c753edf-83c4-4ea0-a278-b6803d637e73/ENCFF117MQV.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR728FFT + strand\ track wgEncodeReg4RnaSeq_ENCFF117MQV\ type bigWig\ visibility full\ encTfChipPkENCFF157ZQI K562 WHSC1 narrowPeak Transcription Factor ChIP-seq Peaks of WHSC1 in K562 from ENCODE 3 (ENCFF157ZQI) 0 779 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of WHSC1 in K562 from ENCODE 3 (ENCFF157ZQI)\ parent encTfChipPk off\ shortLabel K562 WHSC1\ subGroups cellType=K562 factor=WHSC1\ track encTfChipPkENCFF157ZQI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_fwd MscAdipogenicInduction_00hr45minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward 0 779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_fwd MscAdipogenicInduction_00hr45minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward 1 779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ ENCFF964OOU ENCFF964OOU bigWig HCT116: (3) H3K4me3, ENCFF964OOU 2 780 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF964OOU.bw\ color 255,0,0\ longLabel HCT116: (3) H3K4me3, ENCFF964OOU\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 39.2\ shortLabel ENCFF964OOU\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=HCT116 biosampleType=cell_line donor=ENCDO000ABE dataType=typeH3k4me3\ track ENCFF964OOU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF452GCM ENCSR000DOI Peak bigBed 5 K562 POLR3A peaks 4 780 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/98018bec-9a04-4199-bad6-735a85dc3f61/ENCFF452GCM.bigBed\ labelFields none\ longLabel K562 POLR3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF452GCM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF156GJU ENCSR011BHU Signal bigWig Middle frontal area 46 tissue female adult 84 years H3K27ac signal 2 780 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/c367363a-2668-4262-8c80-7bddc035ba72/ENCFF156GJU.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 84 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011BHU Signal\ track wgEncodeReg4Epigenetics_ENCFF156GJU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF541EYF ENCSR728FFT - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal 2 780 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/cb3aeb31-3337-4617-92fa-ea018506e5ba/ENCFF541EYF.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR728FFT - strand\ track wgEncodeReg4RnaSeq_ENCFF541EYF\ type bigWig\ visibility full\ encTfChipPkENCFF115PGE K562 XRCC3 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC3 in K562 from ENCODE 3 (ENCFF115PGE) 0 780 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of XRCC3 in K562 from ENCODE 3 (ENCFF115PGE)\ parent encTfChipPk off\ shortLabel K562 XRCC3\ subGroups cellType=K562 factor=XRCC3\ track encTfChipPkENCFF115PGE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_rev MscAdipogenicInduction_00hr45minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse 0 780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_rev MscAdipogenicInduction_00hr45minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse 1 780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep1.CNhs13428.13238-142A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep1_CNhs13428_13238-142A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13238-142A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep1_CNhs13428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13238-142A7\ urlLabel FANTOM5 Details:\ ENCFF221TSA ENCFF221TSA bigWig Caco-2: (3) H3K4me3, ENCFF221TSA 2 781 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF221TSA.bw\ color 255,0,0\ longLabel Caco-2: (3) H3K4me3, ENCFF221TSA\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 18.2\ shortLabel ENCFF221TSA\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=Caco-2 biosampleType=cell_line donor=ENCDO000ACR dataType=typeH3k4me3\ track ENCFF221TSA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF355ULG ENCSR000DOI Signal bigWig K562 POLR3A ENCSR000DOI signal 2 781 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/46360248-90ec-4b4d-8195-adf78ee353ed/ENCFF355ULG.bigWig\ color 254,75,173\ longLabel K562 POLR3A ENCSR000DOI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOI Signal\ track wgEncodeReg4TfChip_ENCFF355ULG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF424SSW ENCSR011KBS Peak bigBed 5 Squamous cell carcinoma skin epidermis tissue male adult 84 years H3K4me3 peak 4 781 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/b0ab3370-042f-4468-bd40-d844264025a2/ENCFF424SSW.bigBed\ color 255,0,0\ longLabel Squamous cell carcinoma skin epidermis tissue male adult 84 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011KBS Peak\ track wgEncodeReg4Epigenetics_ENCFF424SSW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF900XSJ ENCSR729CAZ + strand bigWig Omental fat pad tissue male adult (37 years) + strand total RNA-seq signal 2 781 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f37e2cf3-af64-475c-b259-681d4bb40cfb/ENCFF900XSJ.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR729CAZ + strand\ track wgEncodeReg4RnaSeq_ENCFF900XSJ\ type bigWig\ visibility full\ encTfChipPkENCFF929TWP K562 XRCC5 narrowPeak Transcription Factor ChIP-seq Peaks of XRCC5 in K562 from ENCODE 3 (ENCFF929TWP) 0 781 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of XRCC5 in K562 from ENCODE 3 (ENCFF929TWP)\ parent encTfChipPk off\ shortLabel K562 XRCC5\ subGroups cellType=K562 factor=XRCC5\ track encTfChipPkENCFF929TWP\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_fwd MscAdipogenicInduction_00hr45minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward 0 781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_fwd MscAdipogenicInduction_00hr45minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward 1 781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ ENCFF487CTD ENCFF487CTD bigWig Transverse colon, female adult (51 years): (3) H3K4me3, ENCFF487CTD 2 782 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF487CTD.bw\ color 255,0,0\ longLabel Transverse colon, female adult (51 years): (3) H3K4me3, ENCFF487CTD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 158.2\ shortLabel ENCFF487CTD\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=transverse_colon-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF487CTD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF448WZN ENCSR000DOK Peak bigBed 5 K562 BDP1 peaks 4 782 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/8d51d3a0-8d82-4ebe-a293-61f6d2e2c0ea/ENCFF448WZN.bigBed\ labelFields none\ longLabel K562 BDP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF448WZN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF921NZD ENCSR011KBS Signal bigWig Squamous cell carcinoma skin epidermis tissue male adult 84 years H3K4me3 signal 2 782 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/098855fd-7fe5-4996-bf04-8bb2b8189937/ENCFF921NZD.bigWig\ color 255,0,0\ longLabel Squamous cell carcinoma skin epidermis tissue male adult 84 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011KBS Signal\ track wgEncodeReg4Epigenetics_ENCFF921NZD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF552PFD ENCSR729CAZ - strand bigWig Omental fat pad tissue male adult (37 years) - strand total RNA-seq signal 2 782 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/9139f204-febb-40ab-ab23-a27948f43df1/ENCFF552PFD.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR729CAZ - strand\ track wgEncodeReg4RnaSeq_ENCFF552PFD\ type bigWig\ visibility full\ encTfChipPkENCFF024TJO K562 YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF024TJO) 0 782 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF024TJO)\ parent encTfChipPk off\ shortLabel K562 YY1 1\ subGroups cellType=K562 factor=YY1\ track encTfChipPkENCFF024TJO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_rev MscAdipogenicInduction_00hr45minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse 0 782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_rev MscAdipogenicInduction_00hr45minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse 1 782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep2.CNhs13429.13239-142A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep2_CNhs13429_13239-142A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13239-142A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep2_CNhs13429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13239-142A8\ urlLabel FANTOM5 Details:\ ENCFF568IBR ENCFF568IBR bigWig Transverse colon, male adult (54 years): (3) H3K4me3, ENCFF568IBR 2 783 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF568IBR.bw\ color 255,0,0\ longLabel Transverse colon, male adult (54 years): (3) H3K4me3, ENCFF568IBR\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 161.2\ shortLabel ENCFF568IBR\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=transverse_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF568IBR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF121YFD ENCSR000DOK Signal bigWig K562 BDP1 ENCSR000DOK signal 2 783 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/83b2fa46-b5db-4b91-8534-d6e9f04782c2/ENCFF121YFD.bigWig\ color 254,75,173\ longLabel K562 BDP1 ENCSR000DOK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DOK Signal\ track wgEncodeReg4TfChip_ENCFF121YFD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF341LQU ENCSR011MGQ Peak bigBed 5 Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K27ac peak 4 783 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d94964be-98d8-479e-a8f4-4a01b73d5cdb/ENCFF341LQU.bigBed\ color 181,145,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011MGQ Peak\ track wgEncodeReg4Epigenetics_ENCFF341LQU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF522IQE ENCSR729VMM + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF + strand total RNA-seq signal 2 783 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/78ad4c9a-fc7a-4393-8aa0-545f8b789231/ENCFF522IQE.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR729VMM + strand\ track wgEncodeReg4RnaSeq_ENCFF522IQE\ type bigWig\ visibility full\ encTfChipPkENCFF635XCI K562 YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF635XCI) 0 783 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in K562 from ENCODE 3 (ENCFF635XCI)\ parent encTfChipPk off\ shortLabel K562 YY1 2\ subGroups cellType=K562 factor=YY1\ track encTfChipPkENCFF635XCI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_fwd MscAdipogenicInduction_00hr45minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward 0 783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_fwd MscAdipogenicInduction_00hr45minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward 1 783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ ENCFF886LUE ENCFF886LUE bigWig Sigmoid colon, male adult (54 years): (3) H3K4me3, ENCFF886LUE 2 784 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF886LUE.bw\ color 255,0,0\ longLabel Sigmoid colon, male adult (54 years): (3) H3K4me3, ENCFF886LUE\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 137.2\ shortLabel ENCFF886LUE\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=sigmoid_colon-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF886LUE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF034FVO ENCSR000DPF Peak bigBed 5 A549 CTCF peaks 4 784 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/56221cda-b9b2-47df-92dc-46a5bb596629/ENCFF034FVO.bigBed\ labelFields none\ longLabel A549 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF034FVO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF608YXU ENCSR011MGQ Signal bigWig Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K27ac signal 2 784 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/df1b214a-c9b2-4719-b594-d2ff8ddefbd5/ENCFF608YXU.bigWig\ color 181,145,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011MGQ Signal\ track wgEncodeReg4Epigenetics_ENCFF608YXU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF635UMF ENCSR729VMM - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF - strand total RNA-seq signal 2 784 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/575facd9-3783-401d-8271-20a28307f4fc/ENCFF635UMF.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens CTCF - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR729VMM - strand\ track wgEncodeReg4RnaSeq_ENCFF635UMF\ type bigWig\ visibility full\ encTfChipPkENCFF388TYU K562 ZBED1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBED1 in K562 from ENCODE 3 (ENCFF388TYU) 0 784 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBED1 in K562 from ENCODE 3 (ENCFF388TYU)\ parent encTfChipPk off\ shortLabel K562 ZBED1\ subGroups cellType=K562 factor=ZBED1\ track encTfChipPkENCFF388TYU\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_rev MscAdipogenicInduction_00hr45minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse 0 784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_rev MscAdipogenicInduction_00hr45minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse 1 784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr45min%2c%20biol_rep3.CNhs13430.13240-142A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr45min, biol_rep3_CNhs13430_13240-142A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13240-142A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr45minBiolRep3_CNhs13430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13240-142A9\ urlLabel FANTOM5 Details:\ ENCFF173NSX ENCFF173NSX bigWig Colonic mucosa, female adult (41 years): (3) H3K4me3, ENCFF173NSX 2 785 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF173NSX.bw\ color 255,0,0\ longLabel Colonic mucosa, female adult (41 years): (3) H3K4me3, ENCFF173NSX\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 22.2\ shortLabel ENCFF173NSX\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=colonic_mucosa-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k4me3\ track ENCFF173NSX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF840GOE ENCSR000DPF Signal bigWig A549 CTCF ENCSR000DPF signal 2 785 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/aa776fc8-8946-43e0-be9b-5c4f3f8eec80/ENCFF840GOE.bigWig\ color 130,163,45\ longLabel A549 CTCF ENCSR000DPF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPF Signal\ track wgEncodeReg4TfChip_ENCFF840GOE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF262LQV ENCSR011NJP Peak bigBed 5 GM18858 ATAC peak 4 785 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/ec8583a9-7d3e-47ab-b83e-c3f0d5c977a5/ENCFF262LQV.bigBed\ color 2,199,185\ longLabel GM18858 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011NJP Peak\ track wgEncodeReg4Epigenetics_ENCFF262LQV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF833ZJA ENCSR733DBA + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 785 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/72a75222-df17-482d-bbd6-fa84ba2d57a7/ENCFF833ZJA.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR733DBA + strand\ track wgEncodeReg4RnaSeq_ENCFF833ZJA\ type bigWig\ visibility full\ encTfChipPkENCFF913HCQ K562 ZBTB11 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB11 in K562 from ENCODE 3 (ENCFF913HCQ) 0 785 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB11 in K562 from ENCODE 3 (ENCFF913HCQ)\ parent encTfChipPk off\ shortLabel K562 ZBTB11\ subGroups cellType=K562 factor=ZBTB11\ track encTfChipPkENCFF913HCQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_fwd MscAdipogenicInduction_01hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward 0 785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_fwd MscAdipogenicInduction_01hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward 1 785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ ENCFF237VMY ENCFF237VMY bigWig Sigmoid colon, female adult (53 years): (3) H3K4me3, ENCFF237VMY 2 786 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF237VMY.bw\ color 255,0,0\ longLabel Sigmoid colon, female adult (53 years): (3) H3K4me3, ENCFF237VMY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 136.2\ shortLabel ENCFF237VMY\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=sigmoid_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF237VMY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF248MBD ENCSR000DPG Peak bigBed 5 AG04449 CTCF peaks 4 786 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/269a50f6-3589-40a3-8fbe-a588f5ef1c21/ENCFF248MBD.bigBed\ labelFields none\ longLabel AG04449 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF248MBD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF636KMV ENCSR011NJP Signal bigWig GM18858 ATAC signal 2 786 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/6fd3e67d-65e1-4c6a-bfcb-b90a9a4e32ab/ENCFF636KMV.bigWig\ color 2,199,185\ longLabel GM18858 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011NJP Signal\ track wgEncodeReg4Epigenetics_ENCFF636KMV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF118EHF ENCSR733DBA - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 786 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/e184707a-1cb7-44f8-a6f4-cbc7d439e99f/ENCFF118EHF.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR733DBA - strand\ track wgEncodeReg4RnaSeq_ENCFF118EHF\ type bigWig\ visibility full\ encTfChipPkENCFF189WAO K562 ZBTB2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB2 in K562 from ENCODE 3 (ENCFF189WAO) 0 786 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB2 in K562 from ENCODE 3 (ENCFF189WAO)\ parent encTfChipPk off\ shortLabel K562 ZBTB2\ subGroups cellType=K562 factor=ZBTB2\ track encTfChipPkENCFF189WAO\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_rev MscAdipogenicInduction_01hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse 0 786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_rev MscAdipogenicInduction_01hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse 1 786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep1.CNhs13431.13241-142B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep1_CNhs13431_13241-142B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13241-142B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep1_CNhs13431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13241-142B1\ urlLabel FANTOM5 Details:\ ENCFF339CRV ENCFF339CRV bigWig Transverse colon, female adult (53 years): (3) H3K4me3, ENCFF339CRV 2 787 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF339CRV.bw\ color 255,0,0\ longLabel Transverse colon, female adult (53 years): (3) H3K4me3, ENCFF339CRV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 159.2\ shortLabel ENCFF339CRV\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=transverse_colon-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF339CRV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF526IVK ENCSR000DPG Signal bigWig AG04449 CTCF ENCSR000DPG signal 2 787 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7134f2ac-c64c-40d5-8949-0a0a3e65ea62/ENCFF526IVK.bigWig\ color 127,133,209\ longLabel AG04449 CTCF ENCSR000DPG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPG Signal\ track wgEncodeReg4TfChip_ENCFF526IVK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF852BFC ENCSR011SAG Peak bigBed 5 Mucosa of gallbladder tissue female child 16 years DNase peak 4 787 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/2bfc9bbc-ab72-4a32-bd0f-4ed728fc9508/ENCFF852BFC.bigBed\ color 6,218,147\ labelFields none\ longLabel Mucosa of gallbladder tissue female child 16 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011SAG Peak\ track wgEncodeReg4Epigenetics_ENCFF852BFC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF225CYB ENCSR733JBX + strand bigWig Progenitor cell of endocrine pancreas + strand total RNA-seq signal 2 787 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/b34e7c20-690d-4d10-863b-44a94b9b04d0/ENCFF225CYB.bigWig\ color 175,100,41\ longLabel Progenitor cell of endocrine pancreas + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR733JBX + strand\ track wgEncodeReg4RnaSeq_ENCFF225CYB\ type bigWig\ visibility full\ encTfChipPkENCFF556STK K562 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in K562 from ENCODE 3 (ENCFF556STK) 0 787 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in K562 from ENCODE 3 (ENCFF556STK)\ parent encTfChipPk off\ shortLabel K562 ZBTB33\ subGroups cellType=K562 factor=ZBTB33\ track encTfChipPkENCFF556STK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_fwd MscAdipogenicInduction_01hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward 0 787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_fwd MscAdipogenicInduction_01hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward 1 787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ ENCFF252OBP ENCFF252OBP bigWig Transverse colon, male adult (37 years): (3) H3K4me3, ENCFF252OBP 2 788 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF252OBP.bw\ color 255,0,0\ longLabel Transverse colon, male adult (37 years): (3) H3K4me3, ENCFF252OBP\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 160.2\ shortLabel ENCFF252OBP\ subGroups organ=large_intestine view=H3K4me3_view simpleBiosample=transverse_colon-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF252OBP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF116DJL ENCSR000DPM Peak bigBed 5 AG04450 CTCF peaks 4 788 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/aff4e966-a92a-4097-a3b5-29ff5e083a60/ENCFF116DJL.bigBed\ labelFields none\ longLabel AG04450 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF116DJL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF040OJC ENCSR011SAG Signal bigWig Mucosa of gallbladder tissue female child 16 years DNase signal 2 788 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/e62a3b57-7635-4882-a217-f4a304a09ec0/ENCFF040OJC.bigWig\ color 6,218,147\ longLabel Mucosa of gallbladder tissue female child 16 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011SAG Signal\ track wgEncodeReg4Epigenetics_ENCFF040OJC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF913EPA ENCSR733JBX - strand bigWig Progenitor cell of endocrine pancreas - strand total RNA-seq signal 2 788 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/be4807e3-1ad9-4f35-953e-137fa437ce99/ENCFF913EPA.bigWig\ color 175,100,41\ longLabel Progenitor cell of endocrine pancreas - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR733JBX - strand\ track wgEncodeReg4RnaSeq_ENCFF913EPA\ type bigWig\ visibility full\ encTfChipPkENCFF088LZZ K562 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in K562 from ENCODE 3 (ENCFF088LZZ) 0 788 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in K562 from ENCODE 3 (ENCFF088LZZ)\ parent encTfChipPk off\ shortLabel K562 ZBTB40\ subGroups cellType=K562 factor=ZBTB40\ track encTfChipPkENCFF088LZZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_rev MscAdipogenicInduction_01hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse 0 788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_rev MscAdipogenicInduction_01hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse 1 788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep2.CNhs13432.13242-142B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep2_CNhs13432_13242-142B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13242-142B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep2_CNhs13432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13242-142B2\ urlLabel FANTOM5 Details:\ ENCFF732PJK ENCFF732PJK bigWig HepG2: (3) H3K4me3, ENCFF732PJK 2 789 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF732PJK.bw\ color 255,0,0\ longLabel HepG2: (3) H3K4me3, ENCFF732PJK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 54.2\ shortLabel ENCFF732PJK\ subGroups organ=liver view=H3K4me3_view simpleBiosample=HepG2 biosampleType=cell_line donor=ENCDO000AAC dataType=typeH3k4me3\ track ENCFF732PJK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF766VDL ENCSR000DPM Signal bigWig AG04450 CTCF ENCSR000DPM signal 2 789 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/87e5bf94-6d70-48e4-84e8-1b6e88ba5370/ENCFF766VDL.bigWig\ color 130,163,45\ longLabel AG04450 CTCF ENCSR000DPM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPM Signal\ track wgEncodeReg4TfChip_ENCFF766VDL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF914CAS ENCSR011VHK Peak bigBed 5 Multiple sclerosis naive B cell DNase peak 4 789 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/e0204e79-4eb9-4745-acf4-b90b77207106/ENCFF914CAS.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis naive B cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011VHK Peak\ track wgEncodeReg4Epigenetics_ENCFF914CAS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF381OAF ENCSR735JKB + strand bigWig HFFc6 + strand total RNA-seq signal 2 789 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/294e9b11-9f72-46bc-8fb4-0e51dc0484b9/ENCFF381OAF.bigWig\ color 20,74,159\ longLabel HFFc6 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR735JKB + strand\ track wgEncodeReg4RnaSeq_ENCFF381OAF\ type bigWig\ visibility full\ encTfChipPkENCFF014KUI K562 ZBTB5 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF014KUI) 0 789 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF014KUI)\ parent encTfChipPk off\ shortLabel K562 ZBTB5 1\ subGroups cellType=K562 factor=ZBTB5\ track encTfChipPkENCFF014KUI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_fwd MscAdipogenicInduction_01hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward 0 789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_fwd MscAdipogenicInduction_01hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward 1 789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ ENCFF137IUT ENCFF137IUT bigWig Hepatocyte, female embryo (5 days): (3) H3K4me3, ENCFF137IUT 2 790 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF137IUT.bw\ color 255,0,0\ longLabel Hepatocyte, female embryo (5 days): (3) H3K4me3, ENCFF137IUT\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 53.2\ shortLabel ENCFF137IUT\ subGroups organ=liver view=H3K4me3_view simpleBiosample=hepatocyte-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF137IUT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF478XPS ENCSR000DPP Peak bigBed 5 AG09309 CTCF peaks 4 790 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/4baed384-f606-4243-a050-a6841ab15252/ENCFF478XPS.bigBed\ labelFields none\ longLabel AG09309 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF478XPS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF957XPY ENCSR011VHK Signal bigWig Multiple sclerosis naive B cell DNase signal 2 790 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/cac0ad44-6d5f-4599-a8b1-3a19842add7a/ENCFF957XPY.bigWig\ color 6,218,147\ longLabel Multiple sclerosis naive B cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011VHK Signal\ track wgEncodeReg4Epigenetics_ENCFF957XPY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF262XNE ENCSR735JKB - strand bigWig HFFc6 - strand total RNA-seq signal 2 790 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/95c86bc4-18c9-4859-9eb3-2c4d1127e5fe/ENCFF262XNE.bigWig\ color 20,74,159\ longLabel HFFc6 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR735JKB - strand\ track wgEncodeReg4RnaSeq_ENCFF262XNE\ type bigWig\ visibility full\ encTfChipPkENCFF813GMP K562 ZBTB5 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF813GMP) 0 790 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB5 in K562 from ENCODE 3 (ENCFF813GMP)\ parent encTfChipPk off\ shortLabel K562 ZBTB5 2\ subGroups cellType=K562 factor=ZBTB5\ track encTfChipPkENCFF813GMP\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_rev MscAdipogenicInduction_01hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse 0 790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_rev MscAdipogenicInduction_01hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse 1 790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr00min%2c%20biol_rep3.CNhs13433.13243-142B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr00min, biol_rep3_CNhs13433_13243-142B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13243-142B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr00minBiolRep3_CNhs13433_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13243-142B3\ urlLabel FANTOM5 Details:\ ENCFF917LFF ENCFF917LFF bigWig Right lobe of liver, female adult (53 years): (3) H3K4me3, ENCFF917LFF 2 791 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF917LFF.bw\ color 255,0,0\ longLabel Right lobe of liver, female adult (53 years): (3) H3K4me3, ENCFF917LFF\ maxHeightPixels 30\ parent H3K4me3_view on\ priority 135.2\ shortLabel ENCFF917LFF\ subGroups organ=liver view=H3K4me3_view simpleBiosample=right_lobe_of_liver-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF917LFF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF233THH ENCSR000DPP Signal bigWig AG09309 CTCF ENCSR000DPP signal 2 791 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/58f4d80a-0bfd-493f-a4e6-29ea9c821269/ENCFF233THH.bigWig\ color 127,133,209\ longLabel AG09309 CTCF ENCSR000DPP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPP Signal\ track wgEncodeReg4TfChip_ENCFF233THH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF719DSW ENCSR011VJK Peak bigBed 5 Suppressor macrophage male adult 21 years and male adult 24 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase peak 4 791 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/01/f7a373cd-5c16-43c5-a62b-a32b8b64714a/ENCFF719DSW.bigBed\ color 6,218,147\ labelFields none\ longLabel Suppressor macrophage male adult 21 years and male adult 24 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011VJK Peak\ track wgEncodeReg4Epigenetics_ENCFF719DSW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF553LFH ENCSR740YMS + strand bigWig Gastroesophageal sphincter tissue female adult (53 years) + strand total RNA-seq signal 2 791 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/53606f2f-2d22-4dab-8d60-d32e09a1bc03/ENCFF553LFH.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR740YMS + strand\ track wgEncodeReg4RnaSeq_ENCFF553LFH\ type bigWig\ visibility full\ encTfChipPkENCFF245LRG K562 ZBTB7A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7A in K562 from ENCODE 3 (ENCFF245LRG) 0 791 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7A in K562 from ENCODE 3 (ENCFF245LRG)\ parent encTfChipPk off\ shortLabel K562 ZBTB7A\ subGroups cellType=K562 factor=ZBTB7A\ track encTfChipPkENCFF245LRG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_fwd MscAdipogenicInduction_01hr40minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward 0 791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_fwd MscAdipogenicInduction_01hr40minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward 1 791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ ENCFF376ZIM ENCFF376ZIM bigWig IMR-90: (3) H3K4me3, ENCFF376ZIM 2 792 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF376ZIM.bw\ color 255,0,0\ longLabel IMR-90: (3) H3K4me3, ENCFF376ZIM\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 57.2\ shortLabel ENCFF376ZIM\ subGroups organ=lung view=H3K4me3_view simpleBiosample=IMR-90 biosampleType=cell_line donor=ENCDO000AAX dataType=typeH3k4me3\ track ENCFF376ZIM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF401ZTN ENCSR000DPS Peak bigBed 5 AG09319 CTCF peaks 4 792 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a429901e-9580-4652-9f67-cba82f29242a/ENCFF401ZTN.bigBed\ labelFields none\ longLabel AG09319 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF401ZTN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF400WNU ENCSR011VJK Signal bigWig Suppressor macrophage male adult 21 years and male adult 24 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase signal 2 792 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/01/cbad78af-7497-4d75-8a81-2c94c2f15049/ENCFF400WNU.bigWig\ color 6,218,147\ longLabel Suppressor macrophage male adult 21 years and male adult 24 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR011VJK Signal\ track wgEncodeReg4Epigenetics_ENCFF400WNU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF313ZMP ENCSR740YMS - strand bigWig Gastroesophageal sphincter tissue female adult (53 years) - strand total RNA-seq signal 2 792 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/dc884b61-25e1-4783-a290-0679a375d21d/ENCFF313ZMP.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR740YMS - strand\ track wgEncodeReg4RnaSeq_ENCFF313ZMP\ type bigWig\ visibility full\ encTfChipPkENCFF328SSL K562 ZBTB8A narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB8A in K562 from ENCODE 3 (ENCFF328SSL) 0 792 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB8A in K562 from ENCODE 3 (ENCFF328SSL)\ parent encTfChipPk off\ shortLabel K562 ZBTB8A\ subGroups cellType=K562 factor=ZBTB8A\ track encTfChipPkENCFF328SSL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_rev MscAdipogenicInduction_01hr40minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse 0 792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_rev MscAdipogenicInduction_01hr40minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse 1 792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep1.CNhs13600.13247-142B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep1_CNhs13600_13247-142B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13247-142B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep1_CNhs13600_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13247-142B7\ urlLabel FANTOM5 Details:\ ENCFF573ZFG ENCFF573ZFG bigWig AG04450: (3) H3K4me3, ENCFF573ZFG 2 793 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF573ZFG.bw\ color 255,0,0\ longLabel AG04450: (3) H3K4me3, ENCFF573ZFG\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 7.2\ shortLabel ENCFF573ZFG\ subGroups organ=lung view=H3K4me3_view simpleBiosample=AG04450 biosampleType=cell_line donor=ENCDO001AAA dataType=typeH3k4me3\ track ENCFF573ZFG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF683EOM ENCSR000DPS Signal bigWig AG09319 CTCF ENCSR000DPS signal 2 793 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/fbf314e1-e148-40d3-afbf-cb268749b433/ENCFF683EOM.bigWig\ color 130,141,158\ longLabel AG09319 CTCF ENCSR000DPS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPS Signal\ track wgEncodeReg4TfChip_ENCFF683EOM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF618KZS ENCSR012KZW Peak bigBed 5 Esophagus squamous epithelium tissue male adult 54 years H3K4me3 peak 4 793 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/a3a7363a-aea7-40ad-bcfd-36620bd9e150/ENCFF618KZS.bigBed\ color 255,0,0\ longLabel Esophagus squamous epithelium tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR012KZW Peak\ track wgEncodeReg4Epigenetics_ENCFF618KZS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF682NDW ENCSR743GKS + strand bigWig PC-9 + strand total RNA-seq signal 2 793 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/6f59add5-8874-40c9-a13d-a8a7e86c4e64/ENCFF682NDW.bigWig\ color 130,163,45\ longLabel PC-9 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR743GKS + strand\ track wgEncodeReg4RnaSeq_ENCFF682NDW\ type bigWig\ visibility full\ encTfChipPkENCFF808NWU K562 ZEB2 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF808NWU) 0 793 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF808NWU)\ parent encTfChipPk off\ shortLabel K562 ZEB2 1\ subGroups cellType=K562 factor=ZEB2\ track encTfChipPkENCFF808NWU\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_fwd MscAdipogenicInduction_01hr40minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward 0 793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_fwd MscAdipogenicInduction_01hr40minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward 1 793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ ENCFF465MDM ENCFF465MDM bigWig PC-9: (3) H3K4me3, ENCFF465MDM 2 794 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF465MDM.bw\ color 255,0,0\ longLabel PC-9: (3) H3K4me3, ENCFF465MDM\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 126.2\ shortLabel ENCFF465MDM\ subGroups organ=lung view=H3K4me3_view simpleBiosample=PC-9 biosampleType=cell_line donor=ENCDO647UHQ dataType=typeH3k4me3\ track ENCFF465MDM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF549AQK ENCSR000DPV Peak bigBed 5 AG10803 CTCF peaks 4 794 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/1d25f50a-607c-4274-80ee-5de6a485b537/ENCFF549AQK.bigBed\ labelFields none\ longLabel AG10803 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF549AQK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF719ORU ENCSR012KZW Signal bigWig Esophagus squamous epithelium tissue male adult 54 years H3K4me3 signal 2 794 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f89bba02-4355-4ab3-a7e4-b872b6025384/ENCFF719ORU.bigWig\ color 255,0,0\ longLabel Esophagus squamous epithelium tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR012KZW Signal\ track wgEncodeReg4Epigenetics_ENCFF719ORU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF617YFI ENCSR743GKS - strand bigWig PC-9 - strand total RNA-seq signal 2 794 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/2778e19b-586e-4cae-9cbe-3fe80cab61fd/ENCFF617YFI.bigWig\ color 130,163,45\ longLabel PC-9 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR743GKS - strand\ track wgEncodeReg4RnaSeq_ENCFF617YFI\ type bigWig\ visibility full\ encTfChipPkENCFF553KIK K562 ZEB2 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF553KIK) 0 794 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZEB2 in K562 from ENCODE 3 (ENCFF553KIK)\ parent encTfChipPk off\ shortLabel K562 ZEB2 2\ subGroups cellType=K562 factor=ZEB2\ track encTfChipPkENCFF553KIK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_rev MscAdipogenicInduction_01hr40minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse 0 794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_rev MscAdipogenicInduction_01hr40minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse 1 794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep2.CNhs13601.13248-142B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep2_CNhs13601_13248-142B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13248-142B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep2_CNhs13601_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13248-142B8\ urlLabel FANTOM5 Details:\ ENCFF282VQS ENCFF282VQS bigWig Upper lobe of left lung, female adult (51 years): (3) H3K4me3, ENCFF282VQS 2 795 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF282VQS.bw\ color 255,0,0\ longLabel Upper lobe of left lung, female adult (51 years): (3) H3K4me3, ENCFF282VQS\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 163.2\ shortLabel ENCFF282VQS\ subGroups organ=lung view=H3K4me3_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF282VQS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF080HIA ENCSR000DPV Signal bigWig AG10803 CTCF ENCSR000DPV signal 2 795 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b47b8a9d-68a9-43c5-9a31-0ab9bd2a983c/ENCFF080HIA.bigWig\ color 127,133,209\ longLabel AG10803 CTCF ENCSR000DPV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPV Signal\ track wgEncodeReg4TfChip_ENCFF080HIA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF300JJI ENCSR012PII Peak bigBed 5 CD14-positive monocyte male adult 21 years H3K27ac peak 4 795 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e3a52c94-b230-4dd4-9a65-e306549d6b1e/ENCFF300JJI.bigBed\ color 181,145,0\ longLabel CD14-positive monocyte male adult 21 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR012PII Peak\ track wgEncodeReg4Epigenetics_ENCFF300JJI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF988OAV ENCSR743TJZ + strand bigWig T-helper 1 cell male adult (35 years) treated with 30 ng/mL Interleukin-12 subunit beta for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours, 1 μg/mL Interleukin-4 antibody for 36 hours + strand total RNA-seq signal 2 795 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/f3ec8065-aa5f-4658-8328-46bdc593ce1e/ENCFF988OAV.bigWig\ color 254,75,173\ longLabel T-helper 1 cell male adult (35 years) treated with 30 ng/mL Interleukin-12 subunit beta for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours, 1 μg/mL Interleukin-4 antibody for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR743TJZ + strand\ track wgEncodeReg4RnaSeq_ENCFF988OAV\ type bigWig\ visibility full\ encTfChipPkENCFF150ZBH K562 ZFP91 narrowPeak Transcription Factor ChIP-seq Peaks of ZFP91 in K562 from ENCODE 3 (ENCFF150ZBH) 0 795 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZFP91 in K562 from ENCODE 3 (ENCFF150ZBH)\ parent encTfChipPk off\ shortLabel K562 ZFP91\ subGroups cellType=K562 factor=ZFP91\ track encTfChipPkENCFF150ZBH\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_fwd MscAdipogenicInduction_01hr40minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward 0 795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_fwd MscAdipogenicInduction_01hr40minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward 1 795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ ENCFF973MQG ENCFF973MQG bigWig Left lung, male adult (40 years): (3) H3K4me3, ENCFF973MQG 2 796 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF973MQG.bw\ color 255,0,0\ longLabel Left lung, male adult (40 years): (3) H3K4me3, ENCFF973MQG\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 61.2\ shortLabel ENCFF973MQG\ subGroups organ=lung view=H3K4me3_view simpleBiosample=left_lung-_male_adult__40_years_ biosampleType=tissue donor=ENCDO392CRK dataType=typeH3k4me3\ track ENCFF973MQG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF639DMR ENCSR000DPY Peak bigBed 5 Fibroblast of the aortic adventitia female CTCF peaks 4 796 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/af21bf9e-0d0f-44bc-a6b7-597acb9b5f27/ENCFF639DMR.bigBed\ labelFields none\ longLabel Fibroblast of the aortic adventitia female CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF639DMR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF116NCG ENCSR012PII Signal bigWig CD14-positive monocyte male adult 21 years H3K27ac signal 2 796 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/bf7050f1-bc28-4966-b6a4-34b826450ed8/ENCFF116NCG.bigWig\ color 181,145,0\ longLabel CD14-positive monocyte male adult 21 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR012PII Signal\ track wgEncodeReg4Epigenetics_ENCFF116NCG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF830RPO ENCSR743TJZ - strand bigWig T-helper 1 cell male adult (35 years) treated with 30 ng/mL Interleukin-12 subunit beta for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours, 1 μg/mL Interleukin-4 antibody for 36 hours - strand total RNA-seq signal 2 796 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/5fe1ac08-3be0-4ab8-bb2f-dcdd026fdb91/ENCFF830RPO.bigWig\ color 254,75,173\ longLabel T-helper 1 cell male adult (35 years) treated with 30 ng/mL Interleukin-12 subunit beta for 36 hours, 30 ng/mL Interleukin-12 subunit alpha for 36 hours, 1 μg/mL Interleukin-4 antibody for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR743TJZ - strand\ track wgEncodeReg4RnaSeq_ENCFF830RPO\ type bigWig\ visibility full\ encTfChipPkENCFF495BPY K562 ZHX1 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX1 in K562 from ENCODE 3 (ENCFF495BPY) 0 796 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZHX1 in K562 from ENCODE 3 (ENCFF495BPY)\ parent encTfChipPk off\ shortLabel K562 ZHX1\ subGroups cellType=K562 factor=ZHX1\ track encTfChipPkENCFF495BPY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_rev MscAdipogenicInduction_01hr40minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse 0 796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_rev MscAdipogenicInduction_01hr40minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse 1 796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr40min%2c%20biol_rep3.CNhs13602.13249-142B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr40min, biol_rep3_CNhs13602_13249-142B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13249-142B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr40minBiolRep3_CNhs13602_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13249-142B9\ urlLabel FANTOM5 Details:\ ENCFF117DUU ENCFF117DUU bigWig Upper lobe of left lung, male adult (54 years): (3) H3K4me3, ENCFF117DUU 2 797 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF117DUU.bw\ color 255,0,0\ longLabel Upper lobe of left lung, male adult (54 years): (3) H3K4me3, ENCFF117DUU\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 166.2\ shortLabel ENCFF117DUU\ subGroups organ=lung view=H3K4me3_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF117DUU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF674AZI ENCSR000DPY Signal bigWig Fibroblast of the aortic adventitia female CTCF ENCSR000DPY signal 2 797 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/5fa9ee91-cab6-482d-8d75-607bd9f15844/ENCFF674AZI.bigWig\ color 255,37,41\ longLabel Fibroblast of the aortic adventitia female CTCF ENCSR000DPY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DPY Signal\ track wgEncodeReg4TfChip_ENCFF674AZI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF227ZSE ENCSR012RCX Peak bigBed 5 Immature natural killer cell DNase peak 4 797 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/5470d288-bedd-4842-85f6-ec14262c724f/ENCFF227ZSE.bigBed\ color 6,218,147\ labelFields none\ longLabel Immature natural killer cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR012RCX Peak\ track wgEncodeReg4Epigenetics_ENCFF227ZSE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF804UTP ENCSR745APD + strand bigWig Natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours + strand total RNA 2 797 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/37535695-6a69-4475-872a-5fdd5e961871/ENCFF804UTP.bigWig\ color 254,75,173\ longLabel Natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR745APD + strand\ track wgEncodeReg4RnaSeq_ENCFF804UTP\ type bigWig\ visibility full\ encTfChipPkENCFF704VDI K562 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in K562 from ENCODE 3 (ENCFF704VDI) 0 797 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in K562 from ENCODE 3 (ENCFF704VDI)\ parent encTfChipPk off\ shortLabel K562 ZKSCAN1\ subGroups cellType=K562 factor=ZKSCAN1\ track encTfChipPkENCFF704VDI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_fwd MscAdipogenicInduction_02hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward 0 797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_fwd MscAdipogenicInduction_02hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward 1 797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ ENCFF032IZZ ENCFF032IZZ bigWig Lower lobe of left lung, male adult (60 years): (3) H3K4me3, ENCFF032IZZ 2 798 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF032IZZ.bw\ color 255,0,0\ longLabel Lower lobe of left lung, male adult (60 years): (3) H3K4me3, ENCFF032IZZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 64.2\ shortLabel ENCFF032IZZ\ subGroups organ=lung view=H3K4me3_view simpleBiosample=lower_lobe_of_left_lung-_male_adult__60_years_ biosampleType=tissue donor=ENCDO520EJG dataType=typeH3k4me3\ track ENCFF032IZZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF757SRF ENCSR000DQD Peak bigBed 5 BE2C CTCF peaks 4 798 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/4e17de95-5074-44a8-b3b7-61ae61621e58/ENCFF757SRF.bigBed\ labelFields none\ longLabel BE2C CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF757SRF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF022MAM ENCSR012RCX Signal bigWig Immature natural killer cell DNase signal 2 798 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/5e2de8f1-2d6f-4d73-8c01-52e32f611f83/ENCFF022MAM.bigWig\ color 6,218,147\ longLabel Immature natural killer cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR012RCX Signal\ track wgEncodeReg4Epigenetics_ENCFF022MAM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF168JFF ENCSR745APD - strand bigWig Natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours - strand total RNA 2 798 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/106870a5-f5ce-43d1-8e0b-83f287093997/ENCFF168JFF.bigWig\ color 254,75,173\ longLabel Natural killer cell male adult (47 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR745APD - strand\ track wgEncodeReg4RnaSeq_ENCFF168JFF\ type bigWig\ visibility full\ encTfChipPkENCFF526PMI K562 ZMIZ1 narrowPeak Transcription Factor ChIP-seq Peaks of ZMIZ1 in K562 from ENCODE 3 (ENCFF526PMI) 0 798 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZMIZ1 in K562 from ENCODE 3 (ENCFF526PMI)\ parent encTfChipPk off\ shortLabel K562 ZMIZ1\ subGroups cellType=K562 factor=ZMIZ1\ track encTfChipPkENCFF526PMI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_rev MscAdipogenicInduction_02hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse 0 798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_rev MscAdipogenicInduction_02hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse 1 798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep1.CNhs13603.13250-142C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep1_CNhs13603_13250-142C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13250-142C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep1_CNhs13603_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13250-142C1\ urlLabel FANTOM5 Details:\ ENCFF642TNR ENCFF642TNR bigWig Left lung, female child (16 years): (3) H3K4me3, ENCFF642TNR 2 799 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF642TNR.bw\ color 255,0,0\ longLabel Left lung, female child (16 years): (3) H3K4me3, ENCFF642TNR\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 60.2\ shortLabel ENCFF642TNR\ subGroups organ=lung view=H3K4me3_view simpleBiosample=left_lung-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeH3k4me3\ track ENCFF642TNR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF434PKZ ENCSR000DQD Signal bigWig BE2C CTCF ENCSR000DQD signal 2 799 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ac2a6ea5-cae0-4e90-b6f9-e4d2d7f773e8/ENCFF434PKZ.bigWig\ color 155,155,18\ longLabel BE2C CTCF ENCSR000DQD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQD Signal\ track wgEncodeReg4TfChip_ENCFF434PKZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF651HCX ENCSR013KEC Peak bigBed 5 Mesenchymal stem cell originated from H1 H3K27ac peak 4 799 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/62c4304b-19f1-4716-8e1d-3bac21b7699d/ENCFF651HCX.bigBed\ color 181,145,0\ longLabel Mesenchymal stem cell originated from H1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR013KEC Peak\ track wgEncodeReg4Epigenetics_ENCFF651HCX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF008POE ENCSR750ETS + strand bigWig Esophagus muscularis mucosa tissue male adult (54 years) + strand total RNA-seq signal 2 799 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/8a401672-1f8e-403e-8e68-0a0d77cc5d3a/ENCFF008POE.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR750ETS + strand\ track wgEncodeReg4RnaSeq_ENCFF008POE\ type bigWig\ visibility full\ encTfChipPkENCFF195IFB K562 ZMYM3 narrowPeak Transcription Factor ChIP-seq Peaks of ZMYM3 in K562 from ENCODE 3 (ENCFF195IFB) 0 799 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZMYM3 in K562 from ENCODE 3 (ENCFF195IFB)\ parent encTfChipPk off\ shortLabel K562 ZMYM3\ subGroups cellType=K562 factor=ZMYM3\ track encTfChipPkENCFF195IFB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_fwd MscAdipogenicInduction_02hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward 0 799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_fwd MscAdipogenicInduction_02hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward 1 799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ ENCFF372LSW ENCFF372LSW bigWig Upper lobe of left lung, female adult (53 years): (3) H3K4me3, ENCFF372LSW 2 800 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF372LSW.bw\ color 255,0,0\ longLabel Upper lobe of left lung, female adult (53 years): (3) H3K4me3, ENCFF372LSW\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 164.2\ shortLabel ENCFF372LSW\ subGroups organ=lung view=H3K4me3_view simpleBiosample=upper_lobe_of_left_lung-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF372LSW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF434HEC ENCSR000DQI Peak bigBed 5 BJ CTCF peaks 4 800 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/48c3c43f-d37b-469b-82ee-8d53a9867828/ENCFF434HEC.bigBed\ labelFields none\ longLabel BJ CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF434HEC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF160ZUW ENCSR013KEC Signal bigWig Mesenchymal stem cell originated from H1 H3K27ac signal 2 800 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/4e16fd1f-eb37-4ebb-b4a4-4ae19f8afe41/ENCFF160ZUW.bigWig\ color 181,145,0\ longLabel Mesenchymal stem cell originated from H1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR013KEC Signal\ track wgEncodeReg4Epigenetics_ENCFF160ZUW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF027ZWW ENCSR750ETS - strand bigWig Esophagus muscularis mucosa tissue male adult (54 years) - strand total RNA-seq signal 2 800 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/d4fc637d-f8dd-4600-a9a8-060f19d6b49e/ENCFF027ZWW.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR750ETS - strand\ track wgEncodeReg4RnaSeq_ENCFF027ZWW\ type bigWig\ visibility full\ encTfChipPkENCFF700GZI K562 ZNF143 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF143 in K562 from ENCODE 3 (ENCFF700GZI) 0 800 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF143 in K562 from ENCODE 3 (ENCFF700GZI)\ parent encTfChipPk off\ shortLabel K562 ZNF143\ subGroups cellType=K562 factor=ZNF143\ track encTfChipPkENCFF700GZI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_rev MscAdipogenicInduction_02hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse 0 800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_rev MscAdipogenicInduction_02hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse 1 800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep2.CNhs13604.13251-142C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep2_CNhs13604_13251-142C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13251-142C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep2_CNhs13604_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13251-142C2\ urlLabel FANTOM5 Details:\ ENCFF996QZC ENCFF996QZC bigWig Upper lobe of left lung, male adult (37 years): (3) H3K4me3, ENCFF996QZC 2 801 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF996QZC.bw\ color 255,0,0\ longLabel Upper lobe of left lung, male adult (37 years): (3) H3K4me3, ENCFF996QZC\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 165.2\ shortLabel ENCFF996QZC\ subGroups organ=lung view=H3K4me3_view simpleBiosample=upper_lobe_of_left_lung-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF996QZC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF573RGJ ENCSR000DQI Signal bigWig BJ CTCF ENCSR000DQI signal 2 801 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/142feb28-9f2a-4488-9098-7f8a46edcdd2/ENCFF573RGJ.bigWig\ color 127,133,209\ longLabel BJ CTCF ENCSR000DQI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQI Signal\ track wgEncodeReg4TfChip_ENCFF573RGJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF924VKT ENCSR014FPY Peak bigBed 5 IPS DF 4.7 DNase peak 4 801 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/525405c1-d1f9-4a51-8bcd-0a8e03195359/ENCFF924VKT.bigBed\ color 6,218,147\ labelFields none\ longLabel IPS DF 4.7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014FPY Peak\ track wgEncodeReg4Epigenetics_ENCFF924VKT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF056FRZ ENCSR752UNJ + strand bigWig Stomach tissue female adult (53 years) + strand total RNA-seq signal 2 801 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/af260746-5bd6-420c-9821-32257e694378/ENCFF056FRZ.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR752UNJ + strand\ track wgEncodeReg4RnaSeq_ENCFF056FRZ\ type bigWig\ visibility full\ encTfChipPkENCFF855CUN K562 ZNF184 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF855CUN) 0 801 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF855CUN)\ parent encTfChipPk off\ shortLabel K562 ZNF184 1\ subGroups cellType=K562 factor=ZNF184\ track encTfChipPkENCFF855CUN\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_fwd MscAdipogenicInduction_02hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward 0 801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_fwd MscAdipogenicInduction_02hr30minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward 1 801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ ENCFF902HIA ENCFF902HIA bigWig Lower lobe of left lung, female adult (59 years): (3) H3K4me3, ENCFF902HIA 2 802 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF902HIA.bw\ color 255,0,0\ longLabel Lower lobe of left lung, female adult (59 years): (3) H3K4me3, ENCFF902HIA\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 63.2\ shortLabel ENCFF902HIA\ subGroups organ=lung view=H3K4me3_view simpleBiosample=lower_lobe_of_left_lung-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k4me3\ track ENCFF902HIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF934QYS ENCSR000DQN Peak bigBed 5 Caco-2 CTCF peaks 4 802 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/95f547ed-81a5-467d-ba2c-85779efd68f0/ENCFF934QYS.bigBed\ labelFields none\ longLabel Caco-2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF934QYS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF246UXS ENCSR014FPY Signal bigWig IPS DF 4.7 DNase signal 2 802 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e241d0eb-1d3b-41cc-8de9-3f54e7556e75/ENCFF246UXS.bigWig\ color 6,218,147\ longLabel IPS DF 4.7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014FPY Signal\ track wgEncodeReg4Epigenetics_ENCFF246UXS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF746KMZ ENCSR752UNJ - strand bigWig Stomach tissue female adult (53 years) - strand total RNA-seq signal 2 802 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/2c76b8af-0002-4539-8bb9-295932d708f1/ENCFF746KMZ.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR752UNJ - strand\ track wgEncodeReg4RnaSeq_ENCFF746KMZ\ type bigWig\ visibility full\ encTfChipPkENCFF760EPB K562 ZNF184 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF760EPB) 0 802 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF184 in K562 from ENCODE 3 (ENCFF760EPB)\ parent encTfChipPk off\ shortLabel K562 ZNF184 2\ subGroups cellType=K562 factor=ZNF184\ track encTfChipPkENCFF760EPB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_rev MscAdipogenicInduction_02hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse 0 802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_rev MscAdipogenicInduction_02hr30minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse 1 802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep1.CNhs13606.13253-142C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep1_CNhs13606_13253-142C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13253-142C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep1_CNhs13606_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13253-142C4\ urlLabel FANTOM5 Details:\ ENCFF958CFK ENCFF958CFK bigWig A673: (3) H3K4me3, ENCFF958CFK 2 803 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF958CFK.bw\ color 255,0,0\ longLabel A673: (3) H3K4me3, ENCFF958CFK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 1.2\ shortLabel ENCFF958CFK\ subGroups organ=muscle view=H3K4me3_view simpleBiosample=A673 biosampleType=cell_line donor=ENCDO027VXA dataType=typeH3k4me3\ track ENCFF958CFK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF227NGR ENCSR000DQN Signal bigWig Caco-2 CTCF ENCSR000DQN signal 2 803 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/64dec546-0560-4f7a-ae71-bb0a6176d16b/ENCFF227NGR.bigWig\ color 86,86,36\ longLabel Caco-2 CTCF ENCSR000DQN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQN Signal\ track wgEncodeReg4TfChip_ENCFF227NGR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF282ZUL ENCSR014GSQ Peak bigBed 5 Adrenal gland tissue female adult 51 years CTCF peak 4 803 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/853a4e2d-3389-4799-9821-0eb4e162079a/ENCFF282ZUL.bigBed\ color 0,176,240\ labelFields none\ longLabel Adrenal gland tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014GSQ Peak\ track wgEncodeReg4Epigenetics_ENCFF282ZUL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF307HAN ENCSR753BWD + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal 2 803 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/ee5585b8-da69-4758-be06-9fddae4dc1f0/ENCFF307HAN.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR753BWD + strand\ track wgEncodeReg4RnaSeq_ENCFF307HAN\ type bigWig\ visibility full\ encTfChipPkENCFF007EEV K562 ZNF24 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF007EEV) 0 803 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF007EEV)\ parent encTfChipPk off\ shortLabel K562 ZNF24 1\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF007EEV\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_fwd MscAdipogenicInduction_02hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward 0 803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_fwd MscAdipogenicInduction_02hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward 1 803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ ENCFF207MNM ENCFF207MNM bigWig Cardiac muscle cell, embryo: (3) H3K4me3, ENCFF207MNM 2 804 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF207MNM.bw\ color 255,0,0\ longLabel Cardiac muscle cell, embryo: (3) H3K4me3, ENCFF207MNM\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 19.2\ shortLabel ENCFF207MNM\ subGroups organ=muscle view=H3K4me3_view simpleBiosample=cardiac_muscle_cell-_embryo biosampleType=in_vitro_differentiated_cells donor=ENCDO924HBJ dataType=typeH3k4me3\ track ENCFF207MNM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF471OQT ENCSR000DQW Peak bigBed 5 GM06990 CTCF peaks 4 804 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/79244903-7867-455b-8c3c-4fc83eafdfd2/ENCFF471OQT.bigBed\ labelFields none\ longLabel GM06990 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF471OQT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF673UYG ENCSR014GSQ Signal bigWig Adrenal gland tissue female adult 51 years CTCF signal 2 804 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/03fcc685-564f-49d2-8856-0f234bb5c3e2/ENCFF673UYG.bigWig\ color 0,176,240\ longLabel Adrenal gland tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014GSQ Signal\ track wgEncodeReg4Epigenetics_ENCFF673UYG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF752NFT ENCSR753BWD - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal 2 804 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/b70aa44c-8586-4990-b652-3ceb04761a26/ENCFF752NFT.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR753BWD - strand\ track wgEncodeReg4RnaSeq_ENCFF752NFT\ type bigWig\ visibility full\ encTfChipPkENCFF723JDW K562 ZNF24 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF723JDW) 0 804 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF723JDW)\ parent encTfChipPk off\ shortLabel K562 ZNF24 2\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF723JDW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_rev MscAdipogenicInduction_02hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse 0 804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_rev MscAdipogenicInduction_02hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse 1 804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep3.CNhs13608.13255-142C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep3_CNhs13608_13255-142C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13255-142C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep3_CNhs13608_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13255-142C6\ urlLabel FANTOM5 Details:\ ENCFF707BCP ENCFF707BCP bigWig Gastrocnemius medialis, female adult (51 years): (3) H3K4me3, ENCFF707BCP 2 805 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF707BCP.bw\ color 255,0,0\ longLabel Gastrocnemius medialis, female adult (51 years): (3) H3K4me3, ENCFF707BCP\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 29.2\ shortLabel ENCFF707BCP\ subGroups organ=muscle view=H3K4me3_view simpleBiosample=gastrocnemius_medialis-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF707BCP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF564FON ENCSR000DQW Signal bigWig GM06990 CTCF ENCSR000DQW signal 2 805 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/35d5f78c-5ef5-4ce2-b211-9493b367073a/ENCFF564FON.bigWig\ color 254,75,173\ longLabel GM06990 CTCF ENCSR000DQW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQW Signal\ track wgEncodeReg4TfChip_ENCFF564FON\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF295WPC ENCSR014GTH Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 81 years DNase peak 4 805 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/0c2c56f3-4a3b-4d80-86f1-4c60aec9749e/ENCFF295WPC.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 81 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014GTH Peak\ track wgEncodeReg4Epigenetics_ENCFF295WPC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF349IKE ENCSR754WLW + strand bigWig Adrenal gland tissue female adult (53 years) + strand total RNA-seq signal 2 805 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/e0fcc131-26ba-44df-8db2-a2cb74515529/ENCFF349IKE.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR754WLW + strand\ track wgEncodeReg4RnaSeq_ENCFF349IKE\ type bigWig\ visibility full\ encTfChipPkENCFF260CBQ K562 ZNF24 3 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF260CBQ) 0 805 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in K562 from ENCODE 3 (ENCFF260CBQ)\ parent encTfChipPk off\ shortLabel K562 ZNF24 3\ subGroups cellType=K562 factor=ZNF24\ track encTfChipPkENCFF260CBQ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_fwd MscAdipogenicInduction_03hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward 0 805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_fwd MscAdipogenicInduction_03hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward 1 805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ ENCFF772JUK ENCFF772JUK bigWig Gastrocnemius medialis, male adult (54 years): (3) H3K4me3, ENCFF772JUK 2 806 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF772JUK.bw\ color 255,0,0\ longLabel Gastrocnemius medialis, male adult (54 years): (3) H3K4me3, ENCFF772JUK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 32.2\ shortLabel ENCFF772JUK\ subGroups organ=muscle view=H3K4me3_view simpleBiosample=gastrocnemius_medialis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF772JUK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF220GVX ENCSR000DQY Peak bigBed 5 GM12801 CTCF peaks 4 806 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/05/416a1bc7-aecc-48e4-a3a0-548a6403612c/ENCFF220GVX.bigBed\ labelFields none\ longLabel GM12801 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF220GVX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF541ZVM ENCSR014GTH Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 81 years DNase signal 2 806 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/46a203b2-2e49-4272-8ab5-99f3dd04abcf/ENCFF541ZVM.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 81 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014GTH Signal\ track wgEncodeReg4Epigenetics_ENCFF541ZVM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF905PIP ENCSR754WLW - strand bigWig Adrenal gland tissue female adult (53 years) - strand total RNA-seq signal 2 806 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bc48cb19-a820-4b40-b169-0f9bfb61f805/ENCFF905PIP.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR754WLW - strand\ track wgEncodeReg4RnaSeq_ENCFF905PIP\ type bigWig\ visibility full\ encTfChipPkENCFF323AWS K562 ZNF274 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF323AWS) 0 806 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF323AWS)\ parent encTfChipPk off\ shortLabel K562 ZNF274 1\ subGroups cellType=K562 factor=ZNF274\ track encTfChipPkENCFF323AWS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_rev MscAdipogenicInduction_03hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse 0 806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_rev MscAdipogenicInduction_03hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse 1 806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep1.CNhs13609.13256-142C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep1_CNhs13609_13256-142C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13256-142C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep1_CNhs13609_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13256-142C7\ urlLabel FANTOM5 Details:\ ENCFF880UEZ ENCFF880UEZ bigWig Gastrocnemius medialis, female adult (53 years): (3) H3K4me3, ENCFF880UEZ 2 807 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF880UEZ.bw\ color 255,0,0\ longLabel Gastrocnemius medialis, female adult (53 years): (3) H3K4me3, ENCFF880UEZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 30.2\ shortLabel ENCFF880UEZ\ subGroups organ=muscle view=H3K4me3_view simpleBiosample=gastrocnemius_medialis-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF880UEZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF172GQZ ENCSR000DQY Signal bigWig GM12801 CTCF ENCSR000DQY signal 2 807 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/01/55159994-348e-4f25-9cb1-e3ee03e4116a/ENCFF172GQZ.bigWig\ color 254,75,173\ longLabel GM12801 CTCF ENCSR000DQY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DQY Signal\ track wgEncodeReg4TfChip_ENCFF172GQZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF154SNM ENCSR014TDK Peak bigBed 5 Temporal lobe tissue male adult 81 years H3K27ac peak 4 807 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d6c2da96-863f-4853-8de6-6a4da05d67aa/ENCFF154SNM.bigBed\ color 181,145,0\ longLabel Temporal lobe tissue male adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014TDK Peak\ track wgEncodeReg4Epigenetics_ENCFF154SNM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF673JLI ENCSR755FNG + strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 807 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/ec42fa64-41d9-486f-abee-c1a726315f33/ENCFF673JLI.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR755FNG + strand\ track wgEncodeReg4RnaSeq_ENCFF673JLI\ type bigWig\ visibility full\ encTfChipPkENCFF498VQZ K562 ZNF274 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF498VQZ) 0 807 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in K562 from ENCODE 3 (ENCFF498VQZ)\ parent encTfChipPk off\ shortLabel K562 ZNF274 2\ subGroups cellType=K562 factor=ZNF274\ track encTfChipPkENCFF498VQZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_fwd MscAdipogenicInduction_03hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward 0 807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_fwd MscAdipogenicInduction_03hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward 1 807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ ENCFF344ITP ENCFF344ITP bigWig Esophagus muscularis mucosa, male adult (37 years): (3) H3K4me3, ENCFF344ITP 2 808 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF344ITP.bw\ color 255,0,0\ longLabel Esophagus muscularis mucosa, male adult (37 years): (3) H3K4me3, ENCFF344ITP\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 27.2\ shortLabel ENCFF344ITP\ subGroups organ=muscle view=H3K4me3_view simpleBiosample=esophagus_muscularis_mucosa-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF344ITP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF357DQE ENCSR000DRB Peak bigBed 5 GM12864 CTCF peaks 4 808 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/9b775027-2a9d-42d9-ab5f-722d55d621b4/ENCFF357DQE.bigBed\ labelFields none\ longLabel GM12864 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF357DQE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF762XSC ENCSR014TDK Signal bigWig Temporal lobe tissue male adult 81 years H3K27ac signal 2 808 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8c2b4e45-3cd7-493f-8bc2-88feb38e70d3/ENCFF762XSC.bigWig\ color 181,145,0\ longLabel Temporal lobe tissue male adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014TDK Signal\ track wgEncodeReg4Epigenetics_ENCFF762XSC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF151RAG ENCSR755FNG - strand bigWig Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 808 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/56d5e669-025a-4751-9801-e3679ff607e0/ENCFF151RAG.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR755FNG - strand\ track wgEncodeReg4RnaSeq_ENCFF151RAG\ type bigWig\ visibility full\ encTfChipPkENCFF074WRG K562 ZNF280A narrowPeak Transcription Factor ChIP-seq Peaks of ZNF280A in K562 from ENCODE 3 (ENCFF074WRG) 0 808 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF280A in K562 from ENCODE 3 (ENCFF074WRG)\ parent encTfChipPk off\ shortLabel K562 ZNF280A\ subGroups cellType=K562 factor=ZNF280A\ track encTfChipPkENCFF074WRG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_rev MscAdipogenicInduction_03hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse 0 808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_rev MscAdipogenicInduction_03hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse 1 808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep3.CNhs13611.13258-142C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep3_CNhs13611_13258-142C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13258-142C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep3_CNhs13611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13258-142C9\ urlLabel FANTOM5 Details:\ ENCFF431FFY ENCFF431FFY bigWig Gastrocnemius medialis, male adult (37 years): (3) H3K4me3, ENCFF431FFY 2 809 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF431FFY.bw\ color 255,0,0\ longLabel Gastrocnemius medialis, male adult (37 years): (3) H3K4me3, ENCFF431FFY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 31.2\ shortLabel ENCFF431FFY\ subGroups organ=muscle view=H3K4me3_view simpleBiosample=gastrocnemius_medialis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF431FFY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070FTG ENCSR000DRB Signal bigWig GM12864 CTCF ENCSR000DRB signal 2 809 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d78c325e-4373-4528-89d3-96718ea7ab26/ENCFF070FTG.bigWig\ color 254,75,173\ longLabel GM12864 CTCF ENCSR000DRB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRB Signal\ track wgEncodeReg4TfChip_ENCFF070FTG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF355QKC ENCSR014VAC Peak bigBed 5 Right renal cortex interstitium tissue male embryo 105 days DNase peak 4 809 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/00800bc5-f7a0-48f3-a687-6e735ddb58f2/ENCFF355QKC.bigBed\ color 6,218,147\ labelFields none\ longLabel Right renal cortex interstitium tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014VAC Peak\ track wgEncodeReg4Epigenetics_ENCFF355QKC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF541ZMB ENCSR759TPN + strand bigWig Left colon tissue female adult (59 years) + strand total RNA-seq signal 2 809 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/767985b6-c34d-4bc3-8ff5-544eda880e17/ENCFF541ZMB.bigWig\ color 86,86,36\ longLabel Left colon tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR759TPN + strand\ track wgEncodeReg4RnaSeq_ENCFF541ZMB\ type bigWig\ visibility full\ encTfChipPkENCFF596JDS K562 ZNF282 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF282 in K562 from ENCODE 3 (ENCFF596JDS) 0 809 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF282 in K562 from ENCODE 3 (ENCFF596JDS)\ parent encTfChipPk off\ shortLabel K562 ZNF282\ subGroups cellType=K562 factor=ZNF282\ track encTfChipPkENCFF596JDS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_fwd MscAdipogenicInduction_Day01Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward 0 809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_fwd MscAdipogenicInduction_Day01Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward 1 809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ ENCFF958TLM ENCFF958TLM bigWig Tibial nerve, female adult (51 years): (3) H3K4me3, ENCFF958TLM 2 810 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF958TLM.bw\ color 255,0,0\ longLabel Tibial nerve, female adult (51 years): (3) H3K4me3, ENCFF958TLM\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 155.2\ shortLabel ENCFF958TLM\ subGroups organ=nerve view=H3K4me3_view simpleBiosample=tibial_nerve-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF958TLM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF815OXX ENCSR000DRE Peak bigBed 5 GM12865 CTCF peaks 4 810 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/18/c10a7858-15c6-42e3-9aad-2bc987fc0d5f/ENCFF815OXX.bigBed\ labelFields none\ longLabel GM12865 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF815OXX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF071MVX ENCSR014VAC Signal bigWig Right renal cortex interstitium tissue male embryo 105 days DNase signal 2 810 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/74c118ac-188a-4a02-90ba-8f8a1c937bac/ENCFF071MVX.bigWig\ color 6,218,147\ longLabel Right renal cortex interstitium tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR014VAC Signal\ track wgEncodeReg4Epigenetics_ENCFF071MVX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF677HGP ENCSR759TPN - strand bigWig Left colon tissue female adult (59 years) - strand total RNA-seq signal 2 810 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/f599c6ec-8fbd-4e14-a689-8eabc6334f63/ENCFF677HGP.bigWig\ color 86,86,36\ longLabel Left colon tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR759TPN - strand\ track wgEncodeReg4RnaSeq_ENCFF677HGP\ type bigWig\ visibility full\ encTfChipPkENCFF806GUF K562 ZNF316 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF806GUF) 0 810 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF806GUF)\ parent encTfChipPk off\ shortLabel K562 ZNF316 1\ subGroups cellType=K562 factor=ZNF316\ track encTfChipPkENCFF806GUF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_rev MscAdipogenicInduction_Day01Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse 0 810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_rev MscAdipogenicInduction_Day01Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse 1 810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep2.CNhs13616.13263-142D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep2_CNhs13616_13263-142D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13263-142D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep2_CNhs13616_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13263-142D5\ urlLabel FANTOM5 Details:\ ENCFF779PMH ENCFF779PMH bigWig Tibial nerve, male adult (54 years): (3) H3K4me3, ENCFF779PMH 2 811 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF779PMH.bw\ color 255,0,0\ longLabel Tibial nerve, male adult (54 years): (3) H3K4me3, ENCFF779PMH\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 157.2\ shortLabel ENCFF779PMH\ subGroups organ=nerve view=H3K4me3_view simpleBiosample=tibial_nerve-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF779PMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF452NQO ENCSR000DRE Signal bigWig GM12865 CTCF ENCSR000DRE signal 2 811 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/751644d7-fa61-408f-ad33-eb8c6d79d0d1/ENCFF452NQO.bigWig\ color 254,75,173\ longLabel GM12865 CTCF ENCSR000DRE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRE Signal\ track wgEncodeReg4TfChip_ENCFF452NQO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF468VKU ENCSR015BGH Peak bigBed 5 Caudate nucleus tissue male adult 78 years DNase peak 4 811 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b31e01c0-5541-4d3d-add9-31161a05c241/ENCFF468VKU.bigBed\ color 6,218,147\ labelFields none\ longLabel Caudate nucleus tissue male adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR015BGH Peak\ track wgEncodeReg4Epigenetics_ENCFF468VKU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF961OQN ENCSR761SHI + strand bigWig Neural crest cell + strand total RNA-seq signal 2 811 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/ec214c5b-ceb8-4b0d-9d75-a96839d474a2/ENCFF961OQN.bigWig\ color 118,158,101\ longLabel Neural crest cell + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR761SHI + strand\ track wgEncodeReg4RnaSeq_ENCFF961OQN\ type bigWig\ visibility full\ encTfChipPkENCFF056SEM K562 ZNF316 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF056SEM) 0 811 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF316 in K562 from ENCODE 3 (ENCFF056SEM)\ parent encTfChipPk off\ shortLabel K562 ZNF316 2\ subGroups cellType=K562 factor=ZNF316\ track encTfChipPkENCFF056SEM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_fwd MscAdipogenicInduction_Day01Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward 0 811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_fwd MscAdipogenicInduction_Day01Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward 1 811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ ENCFF201UPO ENCFF201UPO bigWig Tibial nerve, male adult (37 years): (3) H3K4me3, ENCFF201UPO 2 812 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF201UPO.bw\ color 255,0,0\ longLabel Tibial nerve, male adult (37 years): (3) H3K4me3, ENCFF201UPO\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 156.2\ shortLabel ENCFF201UPO\ subGroups organ=nerve view=H3K4me3_view simpleBiosample=tibial_nerve-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF201UPO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF697BYI ENCSR000DRN Peak bigBed 5 GM12872 CTCF peaks 4 812 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/10100013-6441-4bae-b038-514e82adee40/ENCFF697BYI.bigBed\ labelFields none\ longLabel GM12872 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF697BYI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF230MPP ENCSR015BGH Signal bigWig Caudate nucleus tissue male adult 78 years DNase signal 2 812 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/398cf354-7246-42d7-a5dd-6e4421f3611b/ENCFF230MPP.bigWig\ color 6,218,147\ longLabel Caudate nucleus tissue male adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR015BGH Signal\ track wgEncodeReg4Epigenetics_ENCFF230MPP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF814BZJ ENCSR761SHI - strand bigWig Neural crest cell - strand total RNA-seq signal 2 812 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/e8292784-0ebd-4a8a-b897-253d6249abc1/ENCFF814BZJ.bigWig\ color 118,158,101\ longLabel Neural crest cell - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR761SHI - strand\ track wgEncodeReg4RnaSeq_ENCFF814BZJ\ type bigWig\ visibility full\ encTfChipPkENCFF577LQR K562 ZNF318 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF577LQR) 0 812 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF577LQR)\ parent encTfChipPk off\ shortLabel K562 ZNF318 1\ subGroups cellType=K562 factor=ZNF318\ track encTfChipPkENCFF577LQR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_rev MscAdipogenicInduction_Day01Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse 0 812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_rev MscAdipogenicInduction_Day01Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse 1 812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep3.CNhs13617.13264-142D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep3_CNhs13617_13264-142D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13264-142D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep3_CNhs13617_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13264-142D6\ urlLabel FANTOM5 Details:\ ENCFF756NMQ ENCFF756NMQ bigWig Panc1: (3) H3K4me3, ENCFF756NMQ 2 813 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF756NMQ.bw\ color 255,0,0\ longLabel Panc1: (3) H3K4me3, ENCFF756NMQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 120.2\ shortLabel ENCFF756NMQ\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=Panc1 biosampleType=cell_line donor=ENCDO000ABB dataType=typeH3k4me3\ track ENCFF756NMQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF709YNV ENCSR000DRN Signal bigWig GM12872 CTCF ENCSR000DRN signal 2 813 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/52884158-4f0b-47c3-b874-f1d242c16ac4/ENCFF709YNV.bigWig\ color 254,75,173\ longLabel GM12872 CTCF ENCSR000DRN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRN Signal\ track wgEncodeReg4TfChip_ENCFF709YNV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF505ZSZ ENCSR015GFK Peak bigBed 5 Thoracic aorta tissue male adult 37 years H3K27ac peak 4 813 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/4ab0e7fc-0c60-41c0-b049-e6dbeff0bf0a/ENCFF505ZSZ.bigBed\ color 181,145,0\ longLabel Thoracic aorta tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR015GFK Peak\ track wgEncodeReg4Epigenetics_ENCFF505ZSZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF133LYJ ENCSR763OMY + strand bigWig Adrenal gland tissue female adult (41 years) + strand total RNA-seq signal 2 813 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/91b5df09-0dae-429f-91ee-f045d62a60b0/ENCFF133LYJ.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR763OMY + strand\ track wgEncodeReg4RnaSeq_ENCFF133LYJ\ type bigWig\ visibility full\ encTfChipPkENCFF082RIZ K562 ZNF318 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF082RIZ) 0 813 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF318 in K562 from ENCODE 3 (ENCFF082RIZ)\ parent encTfChipPk off\ shortLabel K562 ZNF318 2\ subGroups cellType=K562 factor=ZNF318\ track encTfChipPkENCFF082RIZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_fwd MscAdipogenicInduction_Day02Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward 0 813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_fwd MscAdipogenicInduction_Day02Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward 1 813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ ENCFF165GJZ ENCFF165GJZ bigWig Progenitor cell of endocrine pancreas, female embryo (5 days): (3) H3K4me3, ENCFF165GJZ 2 814 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF165GJZ.bw\ color 255,0,0\ longLabel Progenitor cell of endocrine pancreas, female embryo (5 days): (3) H3K4me3, ENCFF165GJZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 131.2\ shortLabel ENCFF165GJZ\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=progenitor_cell_of_endocrine_pancreas-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF165GJZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF711LOS ENCSR000DRP Peak bigBed 5 GM12873 CTCF peaks 4 814 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/35602120-5169-44d3-a184-00c04de7a840/ENCFF711LOS.bigBed\ labelFields none\ longLabel GM12873 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF711LOS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF762YWL ENCSR015GFK Signal bigWig Thoracic aorta tissue male adult 37 years H3K27ac signal 2 814 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/0f256990-2127-48a1-ade8-553c89ef8be2/ENCFF762YWL.bigWig\ color 181,145,0\ longLabel Thoracic aorta tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR015GFK Signal\ track wgEncodeReg4Epigenetics_ENCFF762YWL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF563LQH ENCSR763OMY - strand bigWig Adrenal gland tissue female adult (41 years) - strand total RNA-seq signal 2 814 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/3ffe66fe-48c9-4c02-b804-6c47db8f6715/ENCFF563LQH.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR763OMY - strand\ track wgEncodeReg4RnaSeq_ENCFF563LQH\ type bigWig\ visibility full\ encTfChipPkENCFF106YXG K562 ZNF384 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF384 in K562 from ENCODE 3 (ENCFF106YXG) 0 814 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF384 in K562 from ENCODE 3 (ENCFF106YXG)\ parent encTfChipPk off\ shortLabel K562 ZNF384\ subGroups cellType=K562 factor=ZNF384\ track encTfChipPkENCFF106YXG\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_rev MscAdipogenicInduction_Day02Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse 0 814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_rev MscAdipogenicInduction_Day02Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse 1 814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep1.CNhs13619.13265-142D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep1_CNhs13619_13265-142D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13265-142D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep1_CNhs13619_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13265-142D7\ urlLabel FANTOM5 Details:\ ENCFF530MCT ENCFF530MCT bigWig Type B pancreatic cell, female embryo (5 days): (3) H3K4me3, ENCFF530MCT 2 815 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF530MCT.bw\ color 255,0,0\ longLabel Type B pancreatic cell, female embryo (5 days): (3) H3K4me3, ENCFF530MCT\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 162.2\ shortLabel ENCFF530MCT\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=type_B_pancreatic_cell-_female_embryo__5_days_ biosampleType=in_vitro_differentiated_cells donor=ENCDO222AAA dataType=typeH3k4me3\ track ENCFF530MCT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF668LUY ENCSR000DRP Signal bigWig GM12873 CTCF ENCSR000DRP signal 2 815 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/789bf5c3-0c8f-4e87-9888-6ce860a94344/ENCFF668LUY.bigWig\ color 254,75,173\ longLabel GM12873 CTCF ENCSR000DRP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRP Signal\ track wgEncodeReg4TfChip_ENCFF668LUY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF547NOA ENCSR016THC Peak bigBed 5 Left renal pelvis tissue male embryo 105 days DNase peak 4 815 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/22971668-a5a1-4226-8b83-d85743f291d4/ENCFF547NOA.bigBed\ color 6,218,147\ labelFields none\ longLabel Left renal pelvis tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR016THC Peak\ track wgEncodeReg4Epigenetics_ENCFF547NOA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF270YAA ENCSR773COB + strand bigWig Left colon tissue female adult (46 years) + strand total RNA-seq signal 2 815 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/36693259-5860-4f4a-ba6e-7656e9f677e5/ENCFF270YAA.bigWig\ color 86,86,36\ longLabel Left colon tissue female adult (46 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR773COB + strand\ track wgEncodeReg4RnaSeq_ENCFF270YAA\ type bigWig\ visibility full\ encTfChipPkENCFF644XES K562 ZNF407 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF644XES) 0 815 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF644XES)\ parent encTfChipPk off\ shortLabel K562 ZNF407 1\ subGroups cellType=K562 factor=ZNF407\ track encTfChipPkENCFF644XES\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_fwd MscAdipogenicInduction_Day02Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward 0 815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_fwd MscAdipogenicInduction_Day02Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward 1 815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ ENCFF682UWZ ENCFF682UWZ bigWig Pancreas, female adult (61 years): (3) H3K4me3, ENCFF682UWZ 2 816 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF682UWZ.bw\ color 255,0,0\ longLabel Pancreas, female adult (61 years): (3) H3K4me3, ENCFF682UWZ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 123.2\ shortLabel ENCFF682UWZ\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=pancreas-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeH3k4me3\ track ENCFF682UWZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF942MTD ENCSR000DRR Peak bigBed 5 GM12874 CTCF peaks 4 816 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0823d1b8-1d9f-49d3-97d1-3a862eaabf27/ENCFF942MTD.bigBed\ labelFields none\ longLabel GM12874 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF942MTD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644LZM ENCSR016THC Signal bigWig Left renal pelvis tissue male embryo 105 days DNase signal 2 816 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0d6cef59-da44-401d-8d6e-20023b178dc3/ENCFF644LZM.bigWig\ color 6,218,147\ longLabel Left renal pelvis tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR016THC Signal\ track wgEncodeReg4Epigenetics_ENCFF644LZM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF515TSE ENCSR773COB - strand bigWig Left colon tissue female adult (46 years) - strand total RNA-seq signal 2 816 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/89eb1853-bad5-429d-93bf-b4a0a09a03ce/ENCFF515TSE.bigWig\ color 86,86,36\ longLabel Left colon tissue female adult (46 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR773COB - strand\ track wgEncodeReg4RnaSeq_ENCFF515TSE\ type bigWig\ visibility full\ encTfChipPkENCFF538GSS K562 ZNF407 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF538GSS) 0 816 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF407 in K562 from ENCODE 3 (ENCFF538GSS)\ parent encTfChipPk off\ shortLabel K562 ZNF407 2\ subGroups cellType=K562 factor=ZNF407\ track encTfChipPkENCFF538GSS\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_rev MscAdipogenicInduction_Day02Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse 0 816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_rev MscAdipogenicInduction_Day02Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse 1 816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep2.CNhs13620.13266-142D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep2_CNhs13620_13266-142D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13266-142D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep2_CNhs13620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13266-142D8\ urlLabel FANTOM5 Details:\ ENCFF127LVQ ENCFF127LVQ bigWig Body of pancreas, female adult (51 years): (3) H3K4me3, ENCFF127LVQ 2 817 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF127LVQ.bw\ color 255,0,0\ longLabel Body of pancreas, female adult (51 years): (3) H3K4me3, ENCFF127LVQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 13.2\ shortLabel ENCFF127LVQ\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=body_of_pancreas-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF127LVQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF112WLO ENCSR000DRR Signal bigWig GM12874 CTCF ENCSR000DRR signal 2 817 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6fec2840-d394-4924-93ca-195de70ae7b3/ENCFF112WLO.bigWig\ color 254,75,173\ longLabel GM12874 CTCF ENCSR000DRR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRR Signal\ track wgEncodeReg4TfChip_ENCFF112WLO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF186MDZ ENCSR016XBE Peak bigBed 5 Middle frontal area 46 tissue female adult 75 years H3K27ac peak 4 817 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/56bee158-6982-4699-ad5c-6ed169d02e12/ENCFF186MDZ.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 75 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR016XBE Peak\ track wgEncodeReg4Epigenetics_ENCFF186MDZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF353PPA ENCSR774MGO + strand bigWig Chondrocyte + strand total RNA-seq signal 2 817 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/9a9db846-adea-40fa-b684-18e89b9792c3/ENCFF353PPA.bigWig\ color 138,135,169\ longLabel Chondrocyte + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR774MGO + strand\ track wgEncodeReg4RnaSeq_ENCFF353PPA\ type bigWig\ visibility full\ encTfChipPkENCFF972UGK K562 ZNF592 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in K562 from ENCODE 3 (ENCFF972UGK) 0 817 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in K562 from ENCODE 3 (ENCFF972UGK)\ parent encTfChipPk off\ shortLabel K562 ZNF592\ subGroups cellType=K562 factor=ZNF592\ track encTfChipPkENCFF972UGK\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_fwd MscAdipogenicInduction_Day02Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward 0 817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_fwd MscAdipogenicInduction_Day02Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward 1 817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ ENCFF138VRG ENCFF138VRG bigWig Body of pancreas, male adult (54 years): (3) H3K4me3, ENCFF138VRG 2 818 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF138VRG.bw\ color 255,0,0\ longLabel Body of pancreas, male adult (54 years): (3) H3K4me3, ENCFF138VRG\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 15.2\ shortLabel ENCFF138VRG\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=body_of_pancreas-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF138VRG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF081UCQ ENCSR000DRU Peak bigBed 5 GM12875 CTCF peaks 4 818 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d437eb5e-d1c7-47e1-ae10-16932163d895/ENCFF081UCQ.bigBed\ labelFields none\ longLabel GM12875 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF081UCQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF950IOX ENCSR016XBE Signal bigWig Middle frontal area 46 tissue female adult 75 years H3K27ac signal 2 818 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d1a9006b-86a0-405b-82fb-d53d7b3d5b31/ENCFF950IOX.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 75 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR016XBE Signal\ track wgEncodeReg4Epigenetics_ENCFF950IOX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF059BLY ENCSR774MGO - strand bigWig Chondrocyte - strand total RNA-seq signal 2 818 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/67ee59ec-36c7-4c8c-8cfd-57b98798d14d/ENCFF059BLY.bigWig\ color 138,135,169\ longLabel Chondrocyte - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR774MGO - strand\ track wgEncodeReg4RnaSeq_ENCFF059BLY\ type bigWig\ visibility full\ encTfChipPkENCFF404EVY K562 ZNF639 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF404EVY) 0 818 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF404EVY)\ parent encTfChipPk off\ shortLabel K562 ZNF639 1\ subGroups cellType=K562 factor=ZNF639\ track encTfChipPkENCFF404EVY\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_rev MscAdipogenicInduction_Day02Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse 0 818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_rev MscAdipogenicInduction_Day02Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse 1 818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day02%2c%20biol_rep3.CNhs13621.13267-142D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day02, biol_rep3_CNhs13621_13267-142D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13267-142D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day02Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay02BiolRep3_CNhs13621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13267-142D9\ urlLabel FANTOM5 Details:\ ENCFF849YNY ENCFF849YNY bigWig Pancreas, female child (16 years): (3) H3K4me3, ENCFF849YNY 2 819 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF849YNY.bw\ color 255,0,0\ longLabel Pancreas, female child (16 years): (3) H3K4me3, ENCFF849YNY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 124.2\ shortLabel ENCFF849YNY\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=pancreas-_female_child__16_years_ biosampleType=tissue donor=ENCDO575EGL dataType=typeH3k4me3\ track ENCFF849YNY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF872JBW ENCSR000DRU Signal bigWig GM12875 CTCF ENCSR000DRU signal 2 819 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/ec09c88d-e926-478d-8fb2-827404de9b17/ENCFF872JBW.bigWig\ color 254,75,173\ longLabel GM12875 CTCF ENCSR000DRU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRU Signal\ track wgEncodeReg4TfChip_ENCFF872JBW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF418DMM ENCSR017LGQ Peak bigBed 5 K562 treated with DMSO for 48 hours ATAC peak 4 819 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/d21b0480-b8e6-4de7-8879-72998fc359b4/ENCFF418DMM.bigBed\ color 2,199,185\ longLabel K562 treated with DMSO for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017LGQ Peak\ track wgEncodeReg4Epigenetics_ENCFF418DMM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF464HNU ENCSR776PQP + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 819 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/edd45da8-d3c2-48f6-ba8a-b9847278479c/ENCFF464HNU.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR776PQP + strand\ track wgEncodeReg4RnaSeq_ENCFF464HNU\ type bigWig\ visibility full\ encTfChipPkENCFF008JJE K562 ZNF639 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF008JJE) 0 819 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF639 in K562 from ENCODE 3 (ENCFF008JJE)\ parent encTfChipPk off\ shortLabel K562 ZNF639 2\ subGroups cellType=K562 factor=ZNF639\ track encTfChipPkENCFF008JJE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_fwd MscAdipogenicInduction_Day04Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward 0 819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_fwd MscAdipogenicInduction_Day04Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward 1 819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ ENCFF236JWD ENCFF236JWD bigWig Pancreas, female adult (41 years): (3) H3K4me3, ENCFF236JWD 2 820 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF236JWD.bw\ color 255,0,0\ longLabel Pancreas, female adult (41 years): (3) H3K4me3, ENCFF236JWD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 121.2\ shortLabel ENCFF236JWD\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=pancreas-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k4me3\ track ENCFF236JWD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF485TGR ENCSR000DRZ Peak bigBed 5 GM12878 CTCF peaks 4 820 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/57d0d91e-7776-40b2-a625-07b2b5791ecb/ENCFF485TGR.bigBed\ labelFields none\ longLabel GM12878 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF485TGR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF360VIU ENCSR017LGQ Signal bigWig K562 treated with DMSO for 48 hours ATAC signal 2 820 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/89154339-5db9-438a-935a-492461f25220/ENCFF360VIU.bigWig\ color 2,199,185\ longLabel K562 treated with DMSO for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017LGQ Signal\ track wgEncodeReg4Epigenetics_ENCFF360VIU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF585YXE ENCSR776PQP - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 820 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/9420e994-2692-4561-b6b0-beaff775da63/ENCFF585YXE.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR776PQP - strand\ track wgEncodeReg4RnaSeq_ENCFF585YXE\ type bigWig\ visibility full\ encTfChipPkENCFF951OSW K562 ZNF830 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF951OSW) 0 820 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF951OSW)\ parent encTfChipPk off\ shortLabel K562 ZNF830 1\ subGroups cellType=K562 factor=ZNF830\ track encTfChipPkENCFF951OSW\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_rev MscAdipogenicInduction_Day04Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse 0 820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_rev MscAdipogenicInduction_Day04Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse 1 820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep1.CNhs13622.13268-142E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep1_CNhs13622_13268-142E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13268-142E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep1_CNhs13622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13268-142E1\ urlLabel FANTOM5 Details:\ ENCFF285STS ENCFF285STS bigWig Body of pancreas, male adult (37 years): (3) H3K4me3, ENCFF285STS 2 821 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF285STS.bw\ color 255,0,0\ longLabel Body of pancreas, male adult (37 years): (3) H3K4me3, ENCFF285STS\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 14.2\ shortLabel ENCFF285STS\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=body_of_pancreas-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF285STS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF644EEX ENCSR000DRZ Signal bigWig GM12878 CTCF ENCSR000DRZ signal 2 821 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/03eeca15-17a9-47ac-aa63-08d471c2e25d/ENCFF644EEX.bigWig\ color 254,75,173\ longLabel GM12878 CTCF ENCSR000DRZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DRZ Signal\ track wgEncodeReg4TfChip_ENCFF644EEX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF386ECF ENCSR017OZH Peak bigBed 5 H9 S1 phase stably expressing CDT1, stably expressing GMNN DNase peak 4 821 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/74159cb6-e5b4-43bb-a6f4-cc5a2351c35c/ENCFF386ECF.bigBed\ color 6,218,147\ labelFields none\ longLabel H9 S1 phase stably expressing CDT1, stably expressing GMNN DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017OZH Peak\ track wgEncodeReg4Epigenetics_ENCFF386ECF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF763DEA ENCSR777KAR + strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years) + strand total RNA-seq signal 2 821 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/f9ab3af2-5f74-4426-b15b-53427a4cabd5/ENCFF763DEA.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR777KAR + strand\ track wgEncodeReg4RnaSeq_ENCFF763DEA\ type bigWig\ visibility full\ encTfChipPkENCFF979NKM K562 ZNF830 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF979NKM) 0 821 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF830 in K562 from ENCODE 3 (ENCFF979NKM)\ parent encTfChipPk off\ shortLabel K562 ZNF830 2\ subGroups cellType=K562 factor=ZNF830\ track encTfChipPkENCFF979NKM\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_fwd MscAdipogenicInduction_Day04Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward 0 821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_fwd MscAdipogenicInduction_Day04Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward 1 821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ ENCFF083ENU ENCFF083ENU bigWig Pancreas, female adult (59 years): (3) H3K4me3, ENCFF083ENU 2 822 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF083ENU.bw\ color 255,0,0\ longLabel Pancreas, female adult (59 years): (3) H3K4me3, ENCFF083ENU\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 122.2\ shortLabel ENCFF083ENU\ subGroups organ=pancreas view=H3K4me3_view simpleBiosample=pancreas-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k4me3\ track ENCFF083ENU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF044YTP ENCSR000DSU Peak bigBed 5 Astrocyte of the spinal cord CTCF peaks 4 822 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/05/2c059322-3f1a-4cb0-a5c2-ce72f7efb059/ENCFF044YTP.bigBed\ labelFields none\ longLabel Astrocyte of the spinal cord CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DSU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF044YTP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF782DDL ENCSR017OZH Signal bigWig H9 S1 phase stably expressing CDT1, stably expressing GMNN DNase signal 2 822 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/92b95417-5df6-4740-9f57-b889100402cd/ENCFF782DDL.bigWig\ color 6,218,147\ longLabel H9 S1 phase stably expressing CDT1, stably expressing GMNN DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017OZH Signal\ track wgEncodeReg4Epigenetics_ENCFF782DDL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF662RQH ENCSR777KAR - strand bigWig Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years) - strand total RNA-seq signal 2 822 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/34b5b0fd-28c4-4705-8de4-87f355c93037/ENCFF662RQH.bigWig\ color 155,155,18\ longLabel Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (81 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR777KAR - strand\ track wgEncodeReg4RnaSeq_ENCFF662RQH\ type bigWig\ visibility full\ encTfChipPkENCFF908ZLN K562 ZSCAN29 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF908ZLN) 0 822 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF908ZLN)\ parent encTfChipPk off\ shortLabel K562 ZSCAN29 1\ subGroups cellType=K562 factor=ZSCAN29\ track encTfChipPkENCFF908ZLN\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_rev MscAdipogenicInduction_Day04Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse 0 822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_rev MscAdipogenicInduction_Day04Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse 1 822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep3.CNhs13624.13270-142E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep3_CNhs13624_13270-142E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13270-142E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep3_CNhs13624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13270-142E3\ urlLabel FANTOM5 Details:\ ENCFF995LLA ENCFF995LLA bigWig HFFc6: (3) H3K4me3, ENCFF995LLA 2 823 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF995LLA.bw\ color 255,0,0\ longLabel HFFc6: (3) H3K4me3, ENCFF995LLA\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 55.2\ shortLabel ENCFF995LLA\ subGroups organ=penis view=H3K4me3_view simpleBiosample=HFFc6 biosampleType=cell_line donor=ENCDO737WWC dataType=typeH3k4me3\ track ENCFF995LLA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF387GYF ENCSR000DSU Signal bigWig Astrocyte of the spinal cord CTCF ENCSR000DSU signal 2 823 130 141 158 192 198 206 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/6cb3c4d7-12e3-48f7-8c9d-078cfe215fb3/ENCFF387GYF.bigWig\ color 130,141,158\ longLabel Astrocyte of the spinal cord CTCF ENCSR000DSU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DSU Signal\ track wgEncodeReg4TfChip_ENCFF387GYF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF378BUT ENCSR017RQC Peak bigBed 5 Peyer's patch tissue female adult 53 years ATAC peak 4 823 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/0b7e9a39-64fb-4916-846b-e1a4cd85164a/ENCFF378BUT.bigBed\ color 2,199,185\ longLabel Peyer's patch tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017RQC Peak\ track wgEncodeReg4Epigenetics_ENCFF378BUT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF462CKY ENCSR777TBF + strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 823 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/b653d138-91f1-4afb-aefe-df05e09c814c/ENCFF462CKY.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR777TBF + strand\ track wgEncodeReg4RnaSeq_ENCFF462CKY\ type bigWig\ visibility full\ encTfChipPkENCFF979GFF K562 ZSCAN29 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF979GFF) 0 823 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZSCAN29 in K562 from ENCODE 3 (ENCFF979GFF)\ parent encTfChipPk off\ shortLabel K562 ZSCAN29 2\ subGroups cellType=K562 factor=ZSCAN29\ track encTfChipPkENCFF979GFF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_fwd MscAdipogenicInduction_Day08Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward 0 823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_fwd MscAdipogenicInduction_Day08Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward 1 823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ ENCFF319OET ENCFF319OET bigWig PC-3: (3) H3K4me3, ENCFF319OET 2 824 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF319OET.bw\ color 255,0,0\ longLabel PC-3: (3) H3K4me3, ENCFF319OET\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 125.2\ shortLabel ENCFF319OET\ subGroups organ=prostate view=H3K4me3_view simpleBiosample=PC-3 biosampleType=cell_line donor=ENCDO349AAA dataType=typeH3k4me3\ track ENCFF319OET\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF511OCS ENCSR000DSZ Peak bigBed 5 Astrocyte of the cerebellum CTCF peaks 4 824 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3a6f65e2-7610-46eb-8968-1be6fd1b1bee/ENCFF511OCS.bigBed\ labelFields none\ longLabel Astrocyte of the cerebellum CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DSZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF511OCS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF293YWI ENCSR017RQC Signal bigWig Peyer's patch tissue female adult 53 years ATAC signal 2 824 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/6a668e11-4d95-4bea-8ce6-27bc030727d6/ENCFF293YWI.bigWig\ color 2,199,185\ longLabel Peyer's patch tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017RQC Signal\ track wgEncodeReg4Epigenetics_ENCFF293YWI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF942QIZ ENCSR777TBF - strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 824 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/a2a53db3-9fe1-4878-989d-4fa74fbbf5de/ENCFF942QIZ.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR777TBF - strand\ track wgEncodeReg4RnaSeq_ENCFF942QIZ\ type bigWig\ visibility full\ encTfChipPkENCFF945HJR K562 ZZZ3 narrowPeak Transcription Factor ChIP-seq Peaks of ZZZ3 in K562 from ENCODE 3 (ENCFF945HJR) 0 824 255 85 85 255 170 170 0 0 0 regulation 1 color 255,85,85\ longLabel Transcription Factor ChIP-seq Peaks of ZZZ3 in K562 from ENCODE 3 (ENCFF945HJR)\ parent encTfChipPk off\ shortLabel K562 ZZZ3\ subGroups cellType=K562 factor=ZZZ3\ track encTfChipPkENCFF945HJR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_rev MscAdipogenicInduction_Day08Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse 0 824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_rev MscAdipogenicInduction_Day08Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse 1 824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep1.CNhs13625.13271-142E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep1_CNhs13625_13271-142E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13271-142E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep1_CNhs13625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13271-142E4\ urlLabel FANTOM5 Details:\ ENCFF761PKU ENCFF761PKU bigWig Prostate gland, male adult (37 years): (3) H3K4me3, ENCFF761PKU 2 825 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF761PKU.bw\ color 255,0,0\ longLabel Prostate gland, male adult (37 years): (3) H3K4me3, ENCFF761PKU\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 132.2\ shortLabel ENCFF761PKU\ subGroups organ=prostate view=H3K4me3_view simpleBiosample=prostate_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF761PKU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF812BUV ENCSR000DSZ Signal bigWig Astrocyte of the cerebellum CTCF ENCSR000DSZ signal 2 825 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/9cfd1e80-928e-4e70-8dbb-560d8459e489/ENCFF812BUV.bigWig\ color 155,155,18\ longLabel Astrocyte of the cerebellum CTCF ENCSR000DSZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DSZ Signal\ track wgEncodeReg4TfChip_ENCFF812BUV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF743XFJ ENCSR017SBI Peak bigBed 5 Multiple sclerosis naive B cell DNase peak 4 825 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/a7412cf3-6164-451d-9c27-9e3f8812e94d/ENCFF743XFJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis naive B cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017SBI Peak\ track wgEncodeReg4Epigenetics_ENCFF743XFJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF750IET ENCSR789PJB + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 825 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/8e7e21bb-6997-4c2c-81c2-e7546d9a57dd/ENCFF750IET.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR789PJB + strand\ track wgEncodeReg4RnaSeq_ENCFF750IET\ type bigWig\ visibility full\ encTfChipPkENCFF649QKE KMS-11 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in KMS-11 from ENCODE 3 (ENCFF649QKE) 0 825 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in KMS-11 from ENCODE 3 (ENCFF649QKE)\ parent encTfChipPk off\ shortLabel KMS-11 CTCF\ subGroups cellType=KMS-11 factor=CTCF\ track encTfChipPkENCFF649QKE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_fwd MscAdipogenicInduction_Day08Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward 0 825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_fwd MscAdipogenicInduction_Day08Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward 1 825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ ENCFF446OPT ENCFF446OPT bigWig GM23338: (3) H3K4me3, ENCFF446OPT 2 826 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF446OPT.bw\ color 255,0,0\ longLabel GM23338: (3) H3K4me3, ENCFF446OPT\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 35.2\ shortLabel ENCFF446OPT\ subGroups organ=skin view=H3K4me3_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeH3k4me3\ track ENCFF446OPT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF293XJO ENCSR000DTA Peak bigBed 5 Brain microvascular endothelial cell CTCF peaks 4 826 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2016/12/14/16d3f283-516e-432d-a076-5cdab008f066/ENCFF293XJO.bigBed\ labelFields none\ longLabel Brain microvascular endothelial cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF293XJO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF483CTC ENCSR017SBI Signal bigWig Multiple sclerosis naive B cell DNase signal 2 826 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/a6906c53-c827-42be-bd93-345c8a42ad4c/ENCFF483CTC.bigWig\ color 6,218,147\ longLabel Multiple sclerosis naive B cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017SBI Signal\ track wgEncodeReg4Epigenetics_ENCFF483CTC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF649AHX ENCSR789PJB - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 826 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/0575cad1-a0a2-4dee-bd83-e6aeb7727344/ENCFF649AHX.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR789PJB - strand\ track wgEncodeReg4RnaSeq_ENCFF649AHX\ type bigWig\ visibility full\ encTfChipPkENCFF850DQJ LNCAP CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF850DQJ) 0 826 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF850DQJ)\ parent encTfChipPk off\ shortLabel LNCAP CTCF 1\ subGroups cellType=LNCAP factor=CTCF\ track encTfChipPkENCFF850DQJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_rev MscAdipogenicInduction_Day08Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse 0 826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_rev MscAdipogenicInduction_Day08Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse 1 826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep2.CNhs13626.13272-142E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep2_CNhs13626_13272-142E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13272-142E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep2_CNhs13626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13272-142E5\ urlLabel FANTOM5 Details:\ ENCFF494ASH ENCFF494ASH bigWig GM23338: (3) H3K4me3, ENCFF494ASH 2 827 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF494ASH.bw\ color 255,0,0\ longLabel GM23338: (3) H3K4me3, ENCFF494ASH\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 36.2\ shortLabel ENCFF494ASH\ subGroups organ=skin view=H3K4me3_view simpleBiosample=GM23338 biosampleType=cell_line donor=ENCDO336AAA dataType=typeH3k4me3\ track ENCFF494ASH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF176ELT ENCSR000DTA Signal bigWig Brain microvascular endothelial cell CTCF ENCSR000DTA signal 2 827 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/87a8cdd3-a853-4bf1-9d4c-c60aea31f7b7/ENCFF176ELT.bigWig\ color 255,37,41\ longLabel Brain microvascular endothelial cell CTCF ENCSR000DTA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTA Signal\ track wgEncodeReg4TfChip_ENCFF176ELT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF739ZLW ENCSR017TFH Peak bigBed 5 Right kidney tissue female embryo 87 days DNase peak 4 827 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/171e4641-d67b-4b94-a99e-bce13ca36246/ENCFF739ZLW.bigBed\ color 6,218,147\ labelFields none\ longLabel Right kidney tissue female embryo 87 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017TFH Peak\ track wgEncodeReg4Epigenetics_ENCFF739ZLW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF998DHM ENCSR790BBE + strand bigWig Heart left ventricle tissue female adult (56 years) + strand total RNA-seq signal 2 827 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/b450090c-9332-4d77-85c5-11b2437e6352/ENCFF998DHM.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (56 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR790BBE + strand\ track wgEncodeReg4RnaSeq_ENCFF998DHM\ type bigWig\ visibility full\ encTfChipPkENCFF501SHB LNCAP CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF501SHB) 0 827 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCAP from ENCODE 3 (ENCFF501SHB)\ parent encTfChipPk off\ shortLabel LNCAP CTCF 2\ subGroups cellType=LNCAP factor=CTCF\ track encTfChipPkENCFF501SHB\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_fwd MscAdipogenicInduction_Day08Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward 0 827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_fwd MscAdipogenicInduction_Day08Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward 1 827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ ENCFF719EBT ENCFF719EBT bigWig Keratinocyte, female: (3) H3K4me3, ENCFF719EBT 2 828 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF719EBT.bw\ color 255,0,0\ longLabel Keratinocyte, female: (3) H3K4me3, ENCFF719EBT\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 59.2\ shortLabel ENCFF719EBT\ subGroups organ=skin view=H3K4me3_view simpleBiosample=keratinocyte-_female biosampleType=primary_cell donor=ENCDO268AAA dataType=typeH3k4me3\ track ENCFF719EBT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF326EDY ENCSR000DTF Peak bigBed 5 Cardiac fibroblast female adult CTCF peaks 4 828 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7d5dd8e7-89b3-445f-8116-61e8bd523238/ENCFF326EDY.bigBed\ labelFields none\ longLabel Cardiac fibroblast female adult CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF326EDY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF916VEF ENCSR017TFH Signal bigWig Right kidney tissue female embryo 87 days DNase signal 2 828 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/db21a179-fe19-45b2-bc3d-a67c6b00fcc1/ENCFF916VEF.bigWig\ color 6,218,147\ longLabel Right kidney tissue female embryo 87 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR017TFH Signal\ track wgEncodeReg4Epigenetics_ENCFF916VEF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF984WIV ENCSR790BBE - strand bigWig Heart left ventricle tissue female adult (56 years) - strand total RNA-seq signal 2 828 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/a98426da-6189-49a2-9948-a90bcecd894b/ENCFF984WIV.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (56 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR790BBE - strand\ track wgEncodeReg4RnaSeq_ENCFF984WIV\ type bigWig\ visibility full\ encTfChipPkENCFF670NSE LNCaP_FGC CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in LNCaP_clone_FGC from ENCODE 3 (ENCFF670NSE) 0 828 255 102 85 255 178 170 0 0 0 regulation 1 color 255,102,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in LNCaP_clone_FGC from ENCODE 3 (ENCFF670NSE)\ parent encTfChipPk off\ shortLabel LNCaP_FGC CTCF\ subGroups cellType=LNCaP_clone_FGC factor=CTCF\ track encTfChipPkENCFF670NSE\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_rev MscAdipogenicInduction_Day08Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse 0 828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_rev MscAdipogenicInduction_Day08Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse 1 828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day08%2c%20biol_rep3.CNhs13627.13273-142E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day08, biol_rep3_CNhs13627_13273-142E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13273-142E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day08Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay08BiolRep3_CNhs13627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13273-142E6\ urlLabel FANTOM5 Details:\ ENCFF474VCQ ENCFF474VCQ bigWig Peyers patch, female adult (51 years): (3) H3K4me3, ENCFF474VCQ 2 829 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF474VCQ.bw\ color 255,0,0\ longLabel Peyers patch, female adult (51 years): (3) H3K4me3, ENCFF474VCQ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 127.2\ shortLabel ENCFF474VCQ\ subGroups organ=small_intestine view=H3K4me3_view simpleBiosample=Peyers_patch-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF474VCQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF330JYE ENCSR000DTF Signal bigWig Cardiac fibroblast female adult CTCF ENCSR000DTF signal 2 829 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8d9a2c17-2906-44c7-8f1c-e776eb9c649e/ENCFF330JYE.bigWig\ color 116,50,165\ longLabel Cardiac fibroblast female adult CTCF ENCSR000DTF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTF Signal\ track wgEncodeReg4TfChip_ENCFF330JYE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF620NAG ENCSR019BOC Peak bigBed 5 Brain organoid female embryo 5 days, 30 days post differentiation H3K4me3 peak 4 829 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/1ed80fe5-e426-4f3b-b965-d27c77fa7cbd/ENCFF620NAG.bigBed\ color 255,0,0\ longLabel Brain organoid female embryo 5 days, 30 days post differentiation H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019BOC Peak\ track wgEncodeReg4Epigenetics_ENCFF620NAG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF312ZLI ENCSR792OIJ + strand bigWig K562 + strand total RNA-seq signal 2 829 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/b3985529-cb18-42df-9b9d-fb32854e6245/ENCFF312ZLI.bigWig\ color 254,75,173\ longLabel K562 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR792OIJ + strand\ track wgEncodeReg4RnaSeq_ENCFF312ZLI\ type bigWig\ visibility full\ encTfChipPkENCFF707BQD Loucy CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Loucy from ENCODE 3 (ENCFF707BQD) 0 829 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Loucy from ENCODE 3 (ENCFF707BQD)\ parent encTfChipPk off\ shortLabel Loucy CTCF\ subGroups cellType=Loucy factor=CTCF\ track encTfChipPkENCFF707BQD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_fwd MscAdipogenicInduction_Day12Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward 0 829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_fwd MscAdipogenicInduction_Day12Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward 1 829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ ENCFF305GQX ENCFF305GQX bigWig Peyers patch, male adult (54 years): (3) H3K4me3, ENCFF305GQX 2 830 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF305GQX.bw\ color 255,0,0\ longLabel Peyers patch, male adult (54 years): (3) H3K4me3, ENCFF305GQX\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 130.2\ shortLabel ENCFF305GQX\ subGroups organ=small_intestine view=H3K4me3_view simpleBiosample=Peyers_patch-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF305GQX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF728JSA ENCSR000DTI Peak bigBed 5 Cardiac muscle cell CTCF peaks 4 830 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/767a788d-322a-41a0-8e1d-6c5993691539/ENCFF728JSA.bigBed\ labelFields none\ longLabel Cardiac muscle cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF728JSA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF476WON ENCSR019BOC Signal bigWig Brain organoid female embryo 5 days, 30 days post differentiation H3K4me3 signal 2 830 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/36a69a9c-b1fe-45d9-911c-ff6fb50d3627/ENCFF476WON.bigWig\ color 255,0,0\ longLabel Brain organoid female embryo 5 days, 30 days post differentiation H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019BOC Signal\ track wgEncodeReg4Epigenetics_ENCFF476WON\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF530FJG ENCSR792OIJ - strand bigWig K562 - strand total RNA-seq signal 2 830 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/140e3415-4979-4311-bde4-dec7a10947c5/ENCFF530FJG.bigWig\ color 254,75,173\ longLabel K562 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR792OIJ - strand\ track wgEncodeReg4RnaSeq_ENCFF530FJG\ type bigWig\ visibility full\ encTfChipPkENCFF618NVV MCF-7 ARID3A narrowPeak Transcription Factor ChIP-seq Peaks of ARID3A in MCF-7 from ENCODE 3 (ENCFF618NVV) 0 830 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ARID3A in MCF-7 from ENCODE 3 (ENCFF618NVV)\ parent encTfChipPk off\ shortLabel MCF-7 ARID3A\ subGroups cellType=MCF-7 factor=ARID3A\ track encTfChipPkENCFF618NVV\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_rev MscAdipogenicInduction_Day12Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse 0 830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_rev MscAdipogenicInduction_Day12Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse 1 830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep1.CNhs13628.13274-142E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep1_CNhs13628_13274-142E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13274-142E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep1_CNhs13628_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13274-142E7\ urlLabel FANTOM5 Details:\ ENCFF675KIN ENCFF675KIN bigWig Peyers patch, female adult (53 years): (3) H3K4me3, ENCFF675KIN 2 831 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF675KIN.bw\ color 255,0,0\ longLabel Peyers patch, female adult (53 years): (3) H3K4me3, ENCFF675KIN\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 128.2\ shortLabel ENCFF675KIN\ subGroups organ=small_intestine view=H3K4me3_view simpleBiosample=Peyers_patch-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF675KIN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF193CJN ENCSR000DTI Signal bigWig Cardiac muscle cell CTCF ENCSR000DTI signal 2 831 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7c6e3cb8-02ae-4183-b282-abf7a0db3425/ENCFF193CJN.bigWig\ color 137,135,170\ longLabel Cardiac muscle cell CTCF ENCSR000DTI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTI Signal\ track wgEncodeReg4TfChip_ENCFF193CJN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF798KCG ENCSR019JDO Peak bigBed 5 Karpas-422 DNase peak 4 831 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/c295d409-a9a7-4894-a37f-f2ee6d43b384/ENCFF798KCG.bigBed\ color 6,218,147\ labelFields none\ longLabel Karpas-422 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019JDO Peak\ track wgEncodeReg4Epigenetics_ENCFF798KCG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF305VAX ENCSR793SPM + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal 2 831 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/ee34b8c7-13c8-4b12-a786-49823c8413f2/ENCFF305VAX.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (89 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR793SPM + strand\ track wgEncodeReg4RnaSeq_ENCFF305VAX\ type bigWig\ visibility full\ encTfChipPkENCFF760ZVI MCF-7 ATF7 narrowPeak Transcription Factor ChIP-seq Peaks of ATF7 in MCF-7 from ENCODE 3 (ENCFF760ZVI) 0 831 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ATF7 in MCF-7 from ENCODE 3 (ENCFF760ZVI)\ parent encTfChipPk off\ shortLabel MCF-7 ATF7\ subGroups cellType=MCF-7 factor=ATF7\ track encTfChipPkENCFF760ZVI\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_fwd MscAdipogenicInduction_Day12Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward 0 831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_fwd MscAdipogenicInduction_Day12Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward 1 831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br2+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ ENCFF996ZNX ENCFF996ZNX bigWig Peyers patch, male adult (37 years): (3) H3K4me3, ENCFF996ZNX 2 832 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF996ZNX.bw\ color 255,0,0\ longLabel Peyers patch, male adult (37 years): (3) H3K4me3, ENCFF996ZNX\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 129.2\ shortLabel ENCFF996ZNX\ subGroups organ=small_intestine view=H3K4me3_view simpleBiosample=Peyers_patch-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF996ZNX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF407YNR ENCSR000DTL Peak bigBed 5 Choroid plexus epithelial cell CTCF peaks 4 832 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/f343aa12-934b-4ee3-ab1c-77387646a9af/ENCFF407YNR.bigBed\ labelFields none\ longLabel Choroid plexus epithelial cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF407YNR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF500AGZ ENCSR019JDO Signal bigWig Karpas-422 DNase signal 2 832 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/20f01eee-4e39-43c4-b97e-2ef3041801c5/ENCFF500AGZ.bigWig\ color 6,218,147\ longLabel Karpas-422 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019JDO Signal\ track wgEncodeReg4Epigenetics_ENCFF500AGZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF585NME ENCSR793SPM - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal 2 832 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/df8d2d40-475f-47dd-94c5-7525bc301db1/ENCFF585NME.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (89 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR793SPM - strand\ track wgEncodeReg4RnaSeq_ENCFF585NME\ type bigWig\ visibility full\ encTfChipPkENCFF414LXZ MCF-7 BMI1 narrowPeak Transcription Factor ChIP-seq Peaks of BMI1 in MCF-7 from ENCODE 3 (ENCFF414LXZ) 0 832 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of BMI1 in MCF-7 from ENCODE 3 (ENCFF414LXZ)\ parent encTfChipPk off\ shortLabel MCF-7 BMI1\ subGroups cellType=MCF-7 factor=BMI1\ track encTfChipPkENCFF414LXZ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_rev MscAdipogenicInduction_Day12Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse 0 832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_rev MscAdipogenicInduction_Day12Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse 1 832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep2.CNhs13629.13275-142E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep2_CNhs13629_13275-142E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13275-142E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br2-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep2_CNhs13629_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13275-142E8\ urlLabel FANTOM5 Details:\ ENCFF551GZK ENCFF551GZK bigWig Spleen, female adult (61 years): (3) H3K4me3, ENCFF551GZK 2 833 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF551GZK.bw\ color 255,0,0\ longLabel Spleen, female adult (61 years): (3) H3K4me3, ENCFF551GZK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 142.2\ shortLabel ENCFF551GZK\ subGroups organ=spleen view=H3K4me3_view simpleBiosample=spleen-_female_adult__61_years_ biosampleType=tissue donor=ENCDO186XRB dataType=typeH3k4me3\ track ENCFF551GZK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF438ZPS ENCSR000DTL Signal bigWig Choroid plexus epithelial cell CTCF ENCSR000DTL signal 2 833 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/33c9fb5d-74da-4dc4-8f96-b4d461b417fc/ENCFF438ZPS.bigWig\ color 155,155,18\ longLabel Choroid plexus epithelial cell CTCF ENCSR000DTL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTL Signal\ track wgEncodeReg4TfChip_ENCFF438ZPS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF348YJC ENCSR019MZH Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase peak 4 833 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/d6e67a0f-ed9f-4f8c-9a86-bcffdaf5a695/ENCFF348YJC.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019MZH Peak\ track wgEncodeReg4Epigenetics_ENCFF348YJC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF145JTX ENCSR795GYH + strand bigWig Dorsolateral prefrontal cortex tissue female adult (85 years) + strand total RNA-seq signal 2 833 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/d1614529-9697-49e6-807d-8058d31fefaa/ENCFF145JTX.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (85 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR795GYH + strand\ track wgEncodeReg4RnaSeq_ENCFF145JTX\ type bigWig\ visibility full\ encTfChipPkENCFF730UAD MCF-7 CHD1 narrowPeak Transcription Factor ChIP-seq Peaks of CHD1 in MCF-7 from ENCODE 3 (ENCFF730UAD) 0 833 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CHD1 in MCF-7 from ENCODE 3 (ENCFF730UAD)\ parent encTfChipPk off\ shortLabel MCF-7 CHD1\ subGroups cellType=MCF-7 factor=CHD1\ track encTfChipPkENCFF730UAD\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_fwd MscAdipogenicInduction_Day12Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward 0 833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_fwd MscAdipogenicInduction_Day12Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward 1 833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ ENCFF077FBW ENCFF077FBW bigWig Spleen, female adult (41 years): (3) H3K4me3, ENCFF077FBW 2 834 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF077FBW.bw\ color 255,0,0\ longLabel Spleen, female adult (41 years): (3) H3K4me3, ENCFF077FBW\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 139.2\ shortLabel ENCFF077FBW\ subGroups organ=spleen view=H3K4me3_view simpleBiosample=spleen-_female_adult__41_years_ biosampleType=tissue donor=ENCDO575WHY dataType=typeH3k4me3\ track ENCFF077FBW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF209YMI ENCSR000DTO Peak bigBed 5 HCT116 CTCF peaks 4 834 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/f2b8cb41-ec99-4d0d-96fa-3ae99114859a/ENCFF209YMI.bigBed\ labelFields none\ longLabel HCT116 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF209YMI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF784UWL ENCSR019MZH Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase signal 2 834 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/25afa2c8-8ca5-400a-8614-969fa5e79101/ENCFF784UWL.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019MZH Signal\ track wgEncodeReg4Epigenetics_ENCFF784UWL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF542OFZ ENCSR795GYH - strand bigWig Dorsolateral prefrontal cortex tissue female adult (85 years) - strand total RNA-seq signal 2 834 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/4cf4728f-bb68-4ca2-b87c-1b8893f1c340/ENCFF542OFZ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (85 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR795GYH - strand\ track wgEncodeReg4RnaSeq_ENCFF542OFZ\ type bigWig\ visibility full\ encTfChipPkENCFF025SMR MCF-7 CLOCK 1 narrowPeak Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF025SMR) 0 834 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF025SMR)\ parent encTfChipPk off\ shortLabel MCF-7 CLOCK 1\ subGroups cellType=MCF-7 factor=CLOCK\ track encTfChipPkENCFF025SMR\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_rev MscAdipogenicInduction_Day12Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse 0 834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_rev MscAdipogenicInduction_Day12Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse 1 834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day12%2c%20biol_rep3.CNhs13630.13276-142E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day12, biol_rep3_CNhs13630_13276-142E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13276-142E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day12Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay12BiolRep3_CNhs13630_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13276-142E9\ urlLabel FANTOM5 Details:\ ENCFF387XJD ENCFF387XJD bigWig Spleen, female adult (53 years): (3) H3K4me3, ENCFF387XJD 2 835 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF387XJD.bw\ color 255,0,0\ longLabel Spleen, female adult (53 years): (3) H3K4me3, ENCFF387XJD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 140.2\ shortLabel ENCFF387XJD\ subGroups organ=spleen view=H3K4me3_view simpleBiosample=spleen-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF387XJD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF388PVO ENCSR000DTO Signal bigWig HCT116 CTCF ENCSR000DTO signal 2 835 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ac44078e-fa4e-445f-817b-2ea1fd56fd52/ENCFF388PVO.bigWig\ color 86,86,36\ longLabel HCT116 CTCF ENCSR000DTO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTO Signal\ track wgEncodeReg4TfChip_ENCFF388PVO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF698MKN ENCSR019OML Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K4me3 peak 4 835 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/76c6dcd2-9ac5-4304-a053-e8c981c1960b/ENCFF698MKN.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019OML Peak\ track wgEncodeReg4Epigenetics_ENCFF698MKN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF532KPO ENCSR796HLX + strand bigWig Tibial nerve tissue male adult (37 years) + strand total RNA-seq signal 2 835 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/01aa3d2b-d7a3-4c1f-82d8-8ab0c19bbc90/ENCFF532KPO.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR796HLX + strand\ track wgEncodeReg4RnaSeq_ENCFF532KPO\ type bigWig\ visibility full\ encTfChipPkENCFF305CRL MCF-7 CLOCK 2 narrowPeak Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF305CRL) 0 835 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CLOCK in MCF-7 from ENCODE 3 (ENCFF305CRL)\ parent encTfChipPk off\ shortLabel MCF-7 CLOCK 2\ subGroups cellType=MCF-7 factor=CLOCK\ track encTfChipPkENCFF305CRL\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_fwd MscAdipogenicInduction_Day14Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward 0 835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_fwd MscAdipogenicInduction_Day14Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward 1 835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br1+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ ENCFF842QQE ENCFF842QQE bigWig Spleen, female adult (59 years): (3) H3K4me3, ENCFF842QQE 2 836 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF842QQE.bw\ color 255,0,0\ longLabel Spleen, female adult (59 years): (3) H3K4me3, ENCFF842QQE\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 141.2\ shortLabel ENCFF842QQE\ subGroups organ=spleen view=H3K4me3_view simpleBiosample=spleen-_female_adult__59_years_ biosampleType=tissue donor=ENCDO856ZOJ dataType=typeH3k4me3\ track ENCFF842QQE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF472JGE ENCSR000DTR Peak bigBed 5 Epithelial cell of esophagus CTCF peaks 4 836 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/05/3dc5774b-4667-42d9-81df-790db53e5163/ENCFF472JGE.bigBed\ labelFields none\ longLabel Epithelial cell of esophagus CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF472JGE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF219MXS ENCSR019OML Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K4me3 signal 2 836 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a7aa16f7-f3be-4f58-9acc-cd0a6cfce5ba/ENCFF219MXS.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR019OML Signal\ track wgEncodeReg4Epigenetics_ENCFF219MXS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF900QPE ENCSR796HLX - strand bigWig Tibial nerve tissue male adult (37 years) - strand total RNA-seq signal 2 836 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/dadd0c11-7eea-4028-b1b6-4d201206aca1/ENCFF900QPE.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR796HLX - strand\ track wgEncodeReg4RnaSeq_ENCFF900QPE\ type bigWig\ visibility full\ encTfChipPkENCFF682WFF MCF-7 COPS2 narrowPeak Transcription Factor ChIP-seq Peaks of COPS2 in MCF-7 from ENCODE 3 (ENCFF682WFF) 0 836 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of COPS2 in MCF-7 from ENCODE 3 (ENCFF682WFF)\ parent encTfChipPk off\ shortLabel MCF-7 COPS2\ subGroups cellType=MCF-7 factor=COPS2\ track encTfChipPkENCFF682WFF\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_rev MscAdipogenicInduction_Day14Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse 0 836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_rev MscAdipogenicInduction_Day14Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse 1 836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep1.CNhs13338.13277-142F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep1_CNhs13338_13277-142F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13277-142F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br1-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep1_CNhs13338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13277-142F1\ urlLabel FANTOM5 Details:\ ENCFF283ZMI ENCFF283ZMI bigWig Stomach, female adult (51 years): (3) H3K4me3, ENCFF283ZMI 2 837 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF283ZMI.bw\ color 255,0,0\ longLabel Stomach, female adult (51 years): (3) H3K4me3, ENCFF283ZMI\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 143.2\ shortLabel ENCFF283ZMI\ subGroups organ=stomach view=H3K4me3_view simpleBiosample=stomach-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF283ZMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF906XOP ENCSR000DTR Signal bigWig Epithelial cell of esophagus CTCF ENCSR000DTR signal 2 837 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e577bcfe-27f5-4a0b-8165-65b89e00bd57/ENCFF906XOP.bigWig\ color 159,131,100\ longLabel Epithelial cell of esophagus CTCF ENCSR000DTR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTR Signal\ track wgEncodeReg4TfChip_ENCFF906XOP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF611BIT ENCSR020LAQ Peak bigBed 5 Astrocyte H3K4me3 peak 4 837 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/ce3fb792-be3b-4991-ba45-1a477f4e1866/ENCFF611BIT.bigBed\ color 255,0,0\ longLabel Astrocyte H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR020LAQ Peak\ track wgEncodeReg4Epigenetics_ENCFF611BIT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF537XPY ENCSR797BPP + strand bigWig GM23248 + strand total RNA-seq signal 2 837 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/e04e8e34-4221-4ab7-bbb3-8726c538f5b0/ENCFF537XPY.bigWig\ color 127,133,209\ longLabel GM23248 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR797BPP + strand\ track wgEncodeReg4RnaSeq_ENCFF537XPY\ type bigWig\ visibility full\ encTfChipPkENCFF495PCJ MCF-7 CREB1 1 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF495PCJ) 0 837 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF495PCJ)\ parent encTfChipPk off\ shortLabel MCF-7 CREB1 1\ subGroups cellType=MCF-7 factor=CREB1\ track encTfChipPkENCFF495PCJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_fwd MscAdipogenicInduction_Day14Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward 0 837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_fwd MscAdipogenicInduction_Day14Br3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward 1 837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br3+\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ ENCFF391KDD ENCFF391KDD bigWig Stomach, male adult (54 years): (3) H3K4me3, ENCFF391KDD 2 838 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF391KDD.bw\ color 255,0,0\ longLabel Stomach, male adult (54 years): (3) H3K4me3, ENCFF391KDD\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 146.2\ shortLabel ENCFF391KDD\ subGroups organ=stomach view=H3K4me3_view simpleBiosample=stomach-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF391KDD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF498RMM ENCSR000DTW Peak bigBed 5 HEK293 CTCF peaks 4 838 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/81eb42a1-acc8-4f04-9b9f-fbfbc900d2dc/ENCFF498RMM.bigBed\ labelFields none\ longLabel HEK293 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF498RMM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF153BJG ENCSR020LAQ Signal bigWig Astrocyte H3K4me3 signal 2 838 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/45f845e4-6219-44cf-b82b-f7656a743c39/ENCFF153BJG.bigWig\ color 255,0,0\ longLabel Astrocyte H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR020LAQ Signal\ track wgEncodeReg4Epigenetics_ENCFF153BJG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF924QJU ENCSR797BPP - strand bigWig GM23248 - strand total RNA-seq signal 2 838 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/06143809-6004-4be8-9d79-9fa127192924/ENCFF924QJU.bigWig\ color 127,133,209\ longLabel GM23248 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR797BPP - strand\ track wgEncodeReg4RnaSeq_ENCFF924QJU\ type bigWig\ visibility full\ encTfChipPkENCFF883LRJ MCF-7 CREB1 2 narrowPeak Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF883LRJ) 0 838 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CREB1 in MCF-7 from ENCODE 3 (ENCFF883LRJ)\ parent encTfChipPk off\ shortLabel MCF-7 CREB1 2\ subGroups cellType=MCF-7 factor=CREB1\ track encTfChipPkENCFF883LRJ\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_rev MscAdipogenicInduction_Day14Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse 0 838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_rev MscAdipogenicInduction_Day14Br3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse 1 838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep3.CNhs13632.13279-142F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep3_CNhs13632_13279-142F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13279-142F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br3-\ subGroups sequenceTech=hCAGE category=MSC_to_adipocyte_human strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep3_CNhs13632_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13279-142F3\ urlLabel FANTOM5 Details:\ ENCFF641DNV ENCFF641DNV bigWig Stomach, female adult (53 years): (3) H3K4me3, ENCFF641DNV 2 839 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF641DNV.bw\ color 255,0,0\ longLabel Stomach, female adult (53 years): (3) H3K4me3, ENCFF641DNV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 144.2\ shortLabel ENCFF641DNV\ subGroups organ=stomach view=H3K4me3_view simpleBiosample=stomach-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF641DNV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF128UTY ENCSR000DTW Signal bigWig HEK293 CTCF ENCSR000DTW signal 2 839 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/38da0b71-7ebb-4706-beeb-8ce20680e102/ENCFF128UTY.bigWig\ color 92,161,153\ longLabel HEK293 CTCF ENCSR000DTW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DTW Signal\ track wgEncodeReg4TfChip_ENCFF128UTY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF856ULU ENCSR020LUD Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years DNase peak 4 839 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/cb313f91-7604-4ca5-b2fd-b9d78e7c9773/ENCFF856ULU.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta T cell male adult 21 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR020LUD Peak\ track wgEncodeReg4Epigenetics_ENCFF856ULU\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF722TDX ENCSR797RXV + strand bigWig IMR-90 + strand total RNA-seq signal 2 839 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/74d6787d-409c-4ab7-8069-b8eea0e558d7/ENCFF722TDX.bigWig\ color 130,163,45\ longLabel IMR-90 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR797RXV + strand\ track wgEncodeReg4RnaSeq_ENCFF722TDX\ type bigWig\ visibility full\ encTfChipPkENCFF456MGR MCF-7 CTBP1 narrowPeak Transcription Factor ChIP-seq Peaks of CTBP1 in MCF-7 from ENCODE 3 (ENCFF456MGR) 0 839 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTBP1 in MCF-7 from ENCODE 3 (ENCFF456MGR)\ parent encTfChipPk off\ shortLabel MCF-7 CTBP1\ subGroups cellType=MCF-7 factor=CTBP1\ track encTfChipPkENCFF456MGR\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward 0 839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward 1 839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ ENCFF751MDE ENCFF751MDE bigWig Stomach, male adult (37 years): (3) H3K4me3, ENCFF751MDE 2 840 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF751MDE.bw\ color 255,0,0\ longLabel Stomach, male adult (37 years): (3) H3K4me3, ENCFF751MDE\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 145.2\ shortLabel ENCFF751MDE\ subGroups organ=stomach view=H3K4me3_view simpleBiosample=stomach-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF751MDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF073HFL ENCSR000DUB Peak bigBed 5 HeLa-S3 G1b phase CTCF peaks 4 840 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/05/8accf6bb-6a5a-440c-a9f3-cd5d5c1f6875/ENCFF073HFL.bigBed\ labelFields none\ longLabel HeLa-S3 G1b phase CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF073HFL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF800AIM ENCSR020LUD Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years DNase signal 2 840 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/3cf5d012-048d-4bed-873f-23763925ae43/ENCFF800AIM.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta T cell male adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR020LUD Signal\ track wgEncodeReg4Epigenetics_ENCFF800AIM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF543PFP ENCSR797RXV - strand bigWig IMR-90 - strand total RNA-seq signal 2 840 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/ddab0b25-2c46-4223-9bd4-0be8e568814a/ENCFF543PFP.bigWig\ color 130,163,45\ longLabel IMR-90 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR797RXV - strand\ track wgEncodeReg4RnaSeq_ENCFF543PFP\ type bigWig\ visibility full\ encTfChipPkENCFF476DVJ MCF-7 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF476DVJ) 0 840 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF476DVJ)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 1\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF476DVJ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse 0 840 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse 1 840 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aUd_0h%29.CNhs13554.13305-142I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor1 (868_121:Ud_0h)_CNhs13554_13305-142I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13305-142I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor1868_121Ud_0h_CNhs13554_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13305-142I2\ urlLabel FANTOM5 Details:\ ENCFF665CXY ENCFF665CXY bigWig Testis, male adult (54 years): (3) H3K4me3, ENCFF665CXY 2 841 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF665CXY.bw\ color 255,0,0\ longLabel Testis, male adult (54 years): (3) H3K4me3, ENCFF665CXY\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 148.2\ shortLabel ENCFF665CXY\ subGroups organ=testis view=H3K4me3_view simpleBiosample=testis-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF665CXY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF599XVV ENCSR000DUB Signal bigWig HeLa-S3 G1b phase CTCF ENCSR000DUB signal 2 841 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b6307d03-ad8f-4f9a-80da-591959252f4c/ENCFF599XVV.bigWig\ color 186,111,165\ longLabel HeLa-S3 G1b phase CTCF ENCSR000DUB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUB Signal\ track wgEncodeReg4TfChip_ENCFF599XVV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF751HDH ENCSR021GTX Peak bigBed 5 K562 treated with 1 μM SGC-CBP30 for 48 hours ATAC peak 4 841 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/28287447-42ff-472b-b471-4d280243ceb5/ENCFF751HDH.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM SGC-CBP30 for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR021GTX Peak\ track wgEncodeReg4Epigenetics_ENCFF751HDH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF815QHD ENCSR798USR + strand bigWig T-cell male adult (43 years) + strand total RNA-seq signal 2 841 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/60569de7-9cbe-4142-9a0c-c0da4ac8065f/ENCFF815QHD.bigWig\ color 254,75,173\ longLabel T-cell male adult (43 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR798USR + strand\ track wgEncodeReg4RnaSeq_ENCFF815QHD\ type bigWig\ visibility full\ encTfChipPkENCFF867BUQ MCF-7 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF867BUQ) 0 841 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF867BUQ)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 2\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF867BUQ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward 0 841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward 1 841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ ENCFF229BGF ENCFF229BGF bigWig Testis, male adult (37 years): (3) H3K4me3, ENCFF229BGF 2 842 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF229BGF.bw\ color 255,0,0\ longLabel Testis, male adult (37 years): (3) H3K4me3, ENCFF229BGF\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 147.2\ shortLabel ENCFF229BGF\ subGroups organ=testis view=H3K4me3_view simpleBiosample=testis-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF229BGF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF127KUP ENCSR000DUG Peak bigBed 5 HepG2 CTCF peaks 4 842 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/dc9ebad4-851e-4baa-a38a-6c87657f6ce8/ENCFF127KUP.bigBed\ labelFields none\ longLabel HepG2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF127KUP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF911FTX ENCSR021GTX Signal bigWig K562 treated with 1 μM SGC-CBP30 for 48 hours ATAC signal 2 842 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/ab83547c-4cb3-4952-aab3-9896f372851a/ENCFF911FTX.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM SGC-CBP30 for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR021GTX Signal\ track wgEncodeReg4Epigenetics_ENCFF911FTX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF529CZT ENCSR798USR - strand bigWig T-cell male adult (43 years) - strand total RNA-seq signal 2 842 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/6e2d1bef-84a7-4f0a-bd70-72696a97ed1a/ENCFF529CZT.bigWig\ color 254,75,173\ longLabel T-cell male adult (43 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR798USR - strand\ track wgEncodeReg4RnaSeq_ENCFF529CZT\ type bigWig\ visibility full\ encTfChipPkENCFF942TCG MCF-7 CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF942TCG) 0 842 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF942TCG)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 3\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF942TCG\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse 0 842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse 1 842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aUd_0h%29.CNhs13646.13317-143A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor2 (150_120:Ud_0h)_CNhs13646_13317-143A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13317-143A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor2150_120Ud_0h_CNhs13646_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13317-143A5\ urlLabel FANTOM5 Details:\ ENCFF321LZL ENCFF321LZL bigWig Thyroid gland, female adult (51 years): (3) H3K4me3, ENCFF321LZL 2 843 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF321LZL.bw\ color 255,0,0\ longLabel Thyroid gland, female adult (51 years): (3) H3K4me3, ENCFF321LZL\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 150.2\ shortLabel ENCFF321LZL\ subGroups organ=thyroid view=H3K4me3_view simpleBiosample=thyroid_gland-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF321LZL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF841SRT ENCSR000DUG Signal bigWig HepG2 CTCF ENCSR000DUG signal 2 843 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b26749e4-6722-4f9d-b25a-b0799f212a05/ENCFF841SRT.bigWig\ color 137,152,82\ longLabel HepG2 CTCF ENCSR000DUG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUG Signal\ track wgEncodeReg4TfChip_ENCFF841SRT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF785GOG ENCSR021YFW Peak bigBed 5 Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase peak 4 843 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8e4aa5bd-6688-4cf6-8f2f-68100d4f95b6/ENCFF785GOG.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR021YFW Peak\ track wgEncodeReg4Epigenetics_ENCFF785GOG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF928WEO ENCSR800KLD + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 + strand total RNA-seq signal 2 843 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/93949e68-505e-4b0b-9816-3c9181a7c90d/ENCFF928WEO.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR800KLD + strand\ track wgEncodeReg4RnaSeq_ENCFF928WEO\ type bigWig\ visibility full\ encTfChipPkENCFF685HMV MCF-7 CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF685HMV) 0 843 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF685HMV)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 4\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF685HMV\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward 0 843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward 1 843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ ENCFF229BVH ENCFF229BVH bigWig Thyroid gland, male adult (54 years): (3) H3K4me3, ENCFF229BVH 2 844 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF229BVH.bw\ color 255,0,0\ longLabel Thyroid gland, male adult (54 years): (3) H3K4me3, ENCFF229BVH\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 153.2\ shortLabel ENCFF229BVH\ subGroups organ=thyroid view=H3K4me3_view simpleBiosample=thyroid_gland-_male_adult__54_years_ biosampleType=tissue donor=ENCDO451RUA dataType=typeH3k4me3\ track ENCFF229BVH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF219EBQ ENCSR000DUH Peak bigBed 5 Foreskin fibroblast male newborn CTCF peaks 4 844 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/851117fd-6419-4a5d-a717-ca4c96339d5b/ENCFF219EBQ.bigBed\ labelFields none\ longLabel Foreskin fibroblast male newborn CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF219EBQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF843VVV ENCSR021YFW Signal bigWig Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase signal 2 844 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/406b2164-1a97-450c-9a73-3bddc67855d1/ENCFF843VVV.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR021YFW Signal\ track wgEncodeReg4Epigenetics_ENCFF843VVV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF703FXM ENCSR800KLD - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 - strand total RNA-seq signal 2 844 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/3849de65-9d83-4095-a08c-e62caaa765c8/ENCFF703FXM.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens RAD21 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR800KLD - strand\ track wgEncodeReg4RnaSeq_ENCFF703FXM\ type bigWig\ visibility full\ encTfChipPkENCFF628EUU MCF-7 CTCF 5 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF628EUU) 0 844 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF628EUU)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 5\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF628EUU\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse 0 844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse 1 844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aUd_0h%29.CNhs13650.13323-143B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor3 (536_119:Ud_0h)_CNhs13650_13323-143B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13323-143B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor3536_119Ud_0h_CNhs13650_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13323-143B2\ urlLabel FANTOM5 Details:\ ENCFF145RER ENCFF145RER bigWig Thyroid gland, female adult (53 years): (3) H3K4me3, ENCFF145RER 2 845 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF145RER.bw\ color 255,0,0\ longLabel Thyroid gland, female adult (53 years): (3) H3K4me3, ENCFF145RER\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 151.2\ shortLabel ENCFF145RER\ subGroups organ=thyroid view=H3K4me3_view simpleBiosample=thyroid_gland-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF145RER\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF047ISZ ENCSR000DUH Signal bigWig Foreskin fibroblast male newborn CTCF ENCSR000DUH signal 2 845 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/5e1c4e2d-baca-4afa-88ca-eb6068b1729a/ENCFF047ISZ.bigWig\ color 127,133,209\ longLabel Foreskin fibroblast male newborn CTCF ENCSR000DUH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUH Signal\ track wgEncodeReg4TfChip_ENCFF047ISZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF414UAH ENCSR022ECC Peak bigBed 5 Renal cortex interstitium tissue female embryo 96 days DNase peak 4 845 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/687dcace-33ea-465f-9011-7a9353dda148/ENCFF414UAH.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal cortex interstitium tissue female embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022ECC Peak\ track wgEncodeReg4Epigenetics_ENCFF414UAH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF494ZRU ENCSR800PJQ + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 845 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/18323a8f-9f9d-472a-9c6a-9d8b85006ee5/ENCFF494ZRU.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR800PJQ + strand\ track wgEncodeReg4RnaSeq_ENCFF494ZRU\ type bigWig\ visibility full\ encTfChipPkENCFF785NTC MCF-7 CTCF 6 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF785NTC) 0 845 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in MCF-7 from ENCODE 3 (ENCFF785NTC)\ parent encTfChipPk off\ shortLabel MCF-7 CTCF 6\ subGroups cellType=MCF-7 factor=CTCF\ track encTfChipPkENCFF785NTC\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_fwd MonocyteMacrophageUdornInfluenza_00hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward 0 845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_fwd MonocyteMacrophageUdornInfluenza_00hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward 1 845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ ENCFF501SGE ENCFF501SGE bigWig Thyroid gland, male adult (37 years): (3) H3K4me3, ENCFF501SGE 2 846 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF501SGE.bw\ color 255,0,0\ longLabel Thyroid gland, male adult (37 years): (3) H3K4me3, ENCFF501SGE\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 152.2\ shortLabel ENCFF501SGE\ subGroups organ=thyroid view=H3K4me3_view simpleBiosample=thyroid_gland-_male_adult__37_years_ biosampleType=tissue donor=ENCDO845WKR dataType=typeH3k4me3\ track ENCFF501SGE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF680WYR ENCSR000DUM Peak bigBed 5 HFF-Myc originated from foreskin fibroblast CTCF peaks 4 846 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/db2284fc-d4bc-47ae-a29d-ac8d36e5e16d/ENCFF680WYR.bigBed\ labelFields none\ longLabel HFF-Myc originated from foreskin fibroblast CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF680WYR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF926QWS ENCSR022ECC Signal bigWig Renal cortex interstitium tissue female embryo 96 days DNase signal 2 846 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/dae1a57d-c050-43af-9629-ae28b30768dc/ENCFF926QWS.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022ECC Signal\ track wgEncodeReg4Epigenetics_ENCFF926QWS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF534EGY ENCSR800PJQ - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 846 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/086f1e1c-1dfe-4596-a67c-b85eb7b67fdc/ENCFF534EGY.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR800PJQ - strand\ track wgEncodeReg4RnaSeq_ENCFF534EGY\ type bigWig\ visibility full\ encTfChipPkENCFF762CDY MCF-7 CUX1 narrowPeak Transcription Factor ChIP-seq Peaks of CUX1 in MCF-7 from ENCODE 3 (ENCFF762CDY) 0 846 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CUX1 in MCF-7 from ENCODE 3 (ENCFF762CDY)\ parent encTfChipPk off\ shortLabel MCF-7 CUX1\ subGroups cellType=MCF-7 factor=CUX1\ track encTfChipPkENCFF762CDY\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_rev MonocyteMacrophageUdornInfluenza_00hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse 0 846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_rev MonocyteMacrophageUdornInfluenza_00hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse 1 846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aUd_0h%29.CNhs13639.13311-142I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 00hr00min, donor4 (227_121:Ud_0h)_CNhs13639_13311-142I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13311-142I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection00hr00minDonor4227_121Ud_0h_CNhs13639_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13311-142I8\ urlLabel FANTOM5 Details:\ ENCFF432PYK ENCFF432PYK bigWig HeLa-S3: (3) H3K4me3, ENCFF432PYK 2 847 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF432PYK.bw\ color 255,0,0\ longLabel HeLa-S3: (3) H3K4me3, ENCFF432PYK\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 52.2\ shortLabel ENCFF432PYK\ subGroups organ=uterus view=H3K4me3_view simpleBiosample=HeLa-S3 biosampleType=cell_line donor=ENCDO000AAB dataType=typeH3k4me3\ track ENCFF432PYK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF449WXS ENCSR000DUM Signal bigWig HFF-Myc originated from foreskin fibroblast CTCF ENCSR000DUM signal 2 847 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/45ae864f-2001-40ee-93ad-2c761362fc11/ENCFF449WXS.bigWig\ color 20,74,159\ longLabel HFF-Myc originated from foreskin fibroblast CTCF ENCSR000DUM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUM Signal\ track wgEncodeReg4TfChip_ENCFF449WXS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF701FBE ENCSR022FAQ Peak bigBed 5 Middle frontal area 46 tissue female adult 78 years H3K4me3 peak 4 847 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/5adcab86-a341-4952-9f47-b786607cae77/ENCFF701FBE.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 78 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022FAQ Peak\ track wgEncodeReg4Epigenetics_ENCFF701FBE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF542OVF ENCSR800WIY + strand bigWig Transverse colon tissue female adult (53 years) + strand total RNA-seq signal 2 847 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/e818628a-c471-4b18-ae86-ade36b0b7e35/ENCFF542OVF.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR800WIY + strand\ track wgEncodeReg4RnaSeq_ENCFF542OVF\ type bigWig\ visibility full\ encTfChipPkENCFF042AWM MCF-7 DPF2 narrowPeak Transcription Factor ChIP-seq Peaks of DPF2 in MCF-7 from ENCODE 3 (ENCFF042AWM) 0 847 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of DPF2 in MCF-7 from ENCODE 3 (ENCFF042AWM)\ parent encTfChipPk off\ shortLabel MCF-7 DPF2\ subGroups cellType=MCF-7 factor=DPF2\ track encTfChipPkENCFF042AWM\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward 0 847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_fwd MonocyteMacrophageUdornInfluenza_02hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward 1 847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ ENCFF370WIV ENCFF370WIV bigWig Uterus, female adult (53 years): (3) H3K4me3, ENCFF370WIV 2 848 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF370WIV.bw\ color 255,0,0\ longLabel Uterus, female adult (53 years): (3) H3K4me3, ENCFF370WIV\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 167.2\ shortLabel ENCFF370WIV\ subGroups organ=uterus view=H3K4me3_view simpleBiosample=uterus-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF370WIV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF998PWW ENCSR000DUP Peak bigBed 5 HL-60 CTCF peaks 4 848 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/11/236bd1fc-2c0a-42be-a537-cf9974d53b7f/ENCFF998PWW.bigBed\ labelFields none\ longLabel HL-60 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF998PWW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF298AQY ENCSR022FAQ Signal bigWig Middle frontal area 46 tissue female adult 78 years H3K4me3 signal 2 848 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/dd370709-38a3-4fa2-9855-57caefc02433/ENCFF298AQY.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 78 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022FAQ Signal\ track wgEncodeReg4Epigenetics_ENCFF298AQY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF666BMY ENCSR800WIY - strand bigWig Transverse colon tissue female adult (53 years) - strand total RNA-seq signal 2 848 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/99094ba3-64c4-4a29-9986-9c37747c96d9/ENCFF666BMY.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR800WIY - strand\ track wgEncodeReg4RnaSeq_ENCFF666BMY\ type bigWig\ visibility full\ encTfChipPkENCFF072VGV MCF-7 E2F8 narrowPeak Transcription Factor ChIP-seq Peaks of E2F8 in MCF-7 from ENCODE 3 (ENCFF072VGV) 0 848 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of E2F8 in MCF-7 from ENCODE 3 (ENCFF072VGV)\ parent encTfChipPk off\ shortLabel MCF-7 E2F8\ subGroups cellType=MCF-7 factor=E2F8\ track encTfChipPkENCFF072VGV\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_rev MonocyteMacrophageUdornInfluenza_02hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse 0 848 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_rev MonocyteMacrophageUdornInfluenza_02hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse 1 848 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor1%20%28868_121%3aUd_2h%29.CNhs13555.13306-142I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor1 (868_121:Ud_2h)_CNhs13555_13306-142I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13306-142I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor1868_121Ud_2h_CNhs13555_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13306-142I3\ urlLabel FANTOM5 Details:\ ENCFF904YBG ENCFF904YBG bigWig Vagina, female adult (51 years): (3) H3K4me3, ENCFF904YBG 2 849 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF904YBG.bw\ color 255,0,0\ longLabel Vagina, female adult (51 years): (3) H3K4me3, ENCFF904YBG\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 168.2\ shortLabel ENCFF904YBG\ subGroups organ=vagina view=H3K4me3_view simpleBiosample=vagina-_female_adult__51_years_ biosampleType=tissue donor=ENCDO271OUW dataType=typeH3k4me3\ track ENCFF904YBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF244CXJ ENCSR000DUP Signal bigWig HL-60 CTCF ENCSR000DUP signal 2 849 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b11db3a6-53bc-4b10-8ee2-e9d1c0c9e38a/ENCFF244CXJ.bigWig\ color 254,75,173\ longLabel HL-60 CTCF ENCSR000DUP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUP Signal\ track wgEncodeReg4TfChip_ENCFF244CXJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF144KTX ENCSR022SNQ Peak bigBed 5 Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 peak 4 849 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/22cab830-26ff-4d33-bc9b-51b883914882/ENCFF144KTX.bigBed\ color 255,0,0\ longLabel Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022SNQ Peak\ track wgEncodeReg4Epigenetics_ENCFF144KTX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF718DUW ENCSR801MKV + strand bigWig Adrenal gland tissue female adult (51 years) + strand total RNA-seq signal 2 849 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/062a1477-e4ac-48fb-9945-09343c055cda/ENCFF718DUW.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR801MKV + strand\ track wgEncodeReg4RnaSeq_ENCFF718DUW\ type bigWig\ visibility full\ encTfChipPkENCFF347USC MCF-7 E4F1 narrowPeak Transcription Factor ChIP-seq Peaks of E4F1 in MCF-7 from ENCODE 3 (ENCFF347USC) 0 849 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of E4F1 in MCF-7 from ENCODE 3 (ENCFF347USC)\ parent encTfChipPk off\ shortLabel MCF-7 E4F1\ subGroups cellType=MCF-7 factor=E4F1\ track encTfChipPkENCFF347USC\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward 0 849 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_fwd MonocyteMacrophageUdornInfluenza_02hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward 1 849 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ ENCFF379GSJ ENCFF379GSJ bigWig Vagina, female adult (53 years): (3) H3K4me3, ENCFF379GSJ 2 850 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl /gbdb/hg38/encode4/ccre/coreCollection/ENCFF379GSJ.bw\ color 255,0,0\ longLabel Vagina, female adult (53 years): (3) H3K4me3, ENCFF379GSJ\ maxHeightPixels 30\ parent H3K4me3_view off\ priority 169.2\ shortLabel ENCFF379GSJ\ subGroups organ=vagina view=H3K4me3_view simpleBiosample=vagina-_female_adult__53_years_ biosampleType=tissue donor=ENCDO793LXB dataType=typeH3k4me3\ track ENCFF379GSJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF164SPU ENCSR000DUS Peak bigBed 5 Mammary epithelial cell female CTCF peaks 4 850 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/4d2e6a9a-5fd6-40a0-827f-7b714cbd7e8d/ENCFF164SPU.bigBed\ labelFields none\ longLabel Mammary epithelial cell female CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF164SPU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF060VND ENCSR022SNQ Signal bigWig Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 signal 2 850 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/a685c84d-3d80-4f4a-af98-bb6882d38453/ENCFF060VND.bigWig\ color 255,0,0\ longLabel Activated T-cell male adult 43 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022SNQ Signal\ track wgEncodeReg4Epigenetics_ENCFF060VND\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF483SOV ENCSR801MKV - strand bigWig Adrenal gland tissue female adult (51 years) - strand total RNA-seq signal 2 850 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/3861507e-7c7c-4d44-9202-19097bd5ee67/ENCFF483SOV.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR801MKV - strand\ track wgEncodeReg4RnaSeq_ENCFF483SOV\ type bigWig\ visibility full\ encTfChipPkENCFF020UCD MCF-7 ELF1 narrowPeak Transcription Factor ChIP-seq Peaks of ELF1 in MCF-7 from ENCODE 3 (ENCFF020UCD) 0 850 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ELF1 in MCF-7 from ENCODE 3 (ENCFF020UCD)\ parent encTfChipPk off\ shortLabel MCF-7 ELF1\ subGroups cellType=MCF-7 factor=ELF1\ track encTfChipPkENCFF020UCD\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_rev MonocyteMacrophageUdornInfluenza_02hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse 0 850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_rev MonocyteMacrophageUdornInfluenza_02hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse 1 850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor3%20%28536_119%3aUd_2h%29.CNhs13651.13324-143B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor3 (536_119:Ud_2h)_CNhs13651_13324-143B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13324-143B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor3536_119Ud_2h_CNhs13651_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13324-143B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF715XOZ ENCSR000DUS Signal bigWig Mammary epithelial cell female CTCF ENCSR000DUS signal 2 851 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/3f509807-0230-45de-8ff9-a0fc176081ec/ENCFF715XOZ.bigWig\ color 65,171,173\ longLabel Mammary epithelial cell female CTCF ENCSR000DUS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUS Signal\ track wgEncodeReg4TfChip_ENCFF715XOZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF499HKV ENCSR022UVL Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak 4 851 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/6cf31408-5396-4f2c-8ffe-61870d3fcb6e/ENCFF499HKV.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022UVL Peak\ track wgEncodeReg4Epigenetics_ENCFF499HKV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF980FZG ENCSR802HPM + strand bigWig Peyer's patch tissue male adult (37 years) + strand total RNA-seq signal 2 851 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/c661470f-b966-48f0-b7ea-d7677bb56463/ENCFF980FZG.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR802HPM + strand\ track wgEncodeReg4RnaSeq_ENCFF980FZG\ type bigWig\ visibility full\ encTfChipPkENCFF408TWV MCF-7 ELK1 narrowPeak Transcription Factor ChIP-seq Peaks of ELK1 in MCF-7 from ENCODE 3 (ENCFF408TWV) 0 851 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ELK1 in MCF-7 from ENCODE 3 (ENCFF408TWV)\ parent encTfChipPk off\ shortLabel MCF-7 ELK1\ subGroups cellType=MCF-7 factor=ELK1\ track encTfChipPkENCFF408TWV\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_fwd MonocyteMacrophageUdornInfluenza_02hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward 0 851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_fwd MonocyteMacrophageUdornInfluenza_02hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward 1 851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF109AZU ENCSR000DUU Peak bigBed 5 Fibroblast of mammary gland female CTCF peaks 4 852 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/34b6daf3-a8b2-45aa-9249-fce210f775a7/ENCFF109AZU.bigBed\ labelFields none\ longLabel Fibroblast of mammary gland female CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF109AZU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF632MSC ENCSR022UVL Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 852 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/ec9542f7-0ab9-44c9-a5e7-9263ef2091e8/ENCFF632MSC.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR022UVL Signal\ track wgEncodeReg4Epigenetics_ENCFF632MSC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF654TWW ENCSR802HPM - strand bigWig Peyer's patch tissue male adult (37 years) - strand total RNA-seq signal 2 852 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/1fceb904-b483-4643-a45d-957d3b08d2ae/ENCFF654TWW.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR802HPM - strand\ track wgEncodeReg4RnaSeq_ENCFF654TWW\ type bigWig\ visibility full\ encTfChipPkENCFF519TRJ MCF-7 ESRRA 1 narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF519TRJ) 0 852 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF519TRJ)\ parent encTfChipPk off\ shortLabel MCF-7 ESRRA 1\ subGroups cellType=MCF-7 factor=ESRRA\ track encTfChipPkENCFF519TRJ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_rev MonocyteMacrophageUdornInfluenza_02hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse 0 852 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_rev MonocyteMacrophageUdornInfluenza_02hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse 1 852 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2002hr00min%2c%20donor4%20%28227_121%3aUd_2h%29.CNhs13640.13312-142I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 02hr00min, donor4 (227_121:Ud_2h)_CNhs13640_13312-142I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13312-142I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_02hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection02hr00minDonor4227_121Ud_2h_CNhs13640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13312-142I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF506VAR ENCSR000DUU Signal bigWig Fibroblast of mammary gland female CTCF ENCSR000DUU signal 2 853 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a61bff74-5233-48ee-9528-ab20fadaf979/ENCFF506VAR.bigWig\ color 65,171,173\ longLabel Fibroblast of mammary gland female CTCF ENCSR000DUU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUU Signal\ track wgEncodeReg4TfChip_ENCFF506VAR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF448BWW ENCSR024BXN Peak bigBed 5 Head of caudate nucleus tissue female adult 82 years DNase peak 4 853 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/8f0765c2-5d3d-4eb5-8ce2-f163b3a3085d/ENCFF448BWW.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR024BXN Peak\ track wgEncodeReg4Epigenetics_ENCFF448BWW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF372DGR ENCSR812AKX + strand bigWig Sigmoid colon tissue male adult (54 years) + strand total RNA-seq signal 2 853 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/3728cd55-09e6-4c03-a199-59ce3b15d961/ENCFF372DGR.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR812AKX + strand\ track wgEncodeReg4RnaSeq_ENCFF372DGR\ type bigWig\ visibility full\ encTfChipPkENCFF541DRZ MCF-7 ESRRA 2 narrowPeak Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF541DRZ) 0 853 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ESRRA in MCF-7 from ENCODE 3 (ENCFF541DRZ)\ parent encTfChipPk off\ shortLabel MCF-7 ESRRA 2\ subGroups cellType=MCF-7 factor=ESRRA\ track encTfChipPkENCFF541DRZ\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward 0 853 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward 1 853 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF742RSV ENCSR000DUX Peak bigBed 5 Fibroblast of pulmonary artery CTCF peaks 4 854 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/0d66d38f-2c2c-4251-b2d2-8413b9b2c735/ENCFF742RSV.bigBed\ labelFields none\ longLabel Fibroblast of pulmonary artery CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF742RSV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF153ZPN ENCSR024BXN Signal bigWig Head of caudate nucleus tissue female adult 82 years DNase signal 2 854 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/04a90b0c-0360-4623-9f23-51fb539a3a79/ENCFF153ZPN.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR024BXN Signal\ track wgEncodeReg4Epigenetics_ENCFF153ZPN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF524JOF ENCSR812AKX - strand bigWig Sigmoid colon tissue male adult (54 years) - strand total RNA-seq signal 2 854 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/cd49b45c-e7e6-47a1-a0a3-52d512257eb8/ENCFF524JOF.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR812AKX - strand\ track wgEncodeReg4RnaSeq_ENCFF524JOF\ type bigWig\ visibility full\ encTfChipPkENCFF170POB MCF-7 FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF-7 from ENCODE 3 (ENCFF170POB) 0 854 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF-7 from ENCODE 3 (ENCFF170POB)\ parent encTfChipPk off\ shortLabel MCF-7 FOS\ subGroups cellType=MCF-7 factor=FOS\ track encTfChipPkENCFF170POB\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse 0 854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse 1 854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor1%20%28868_121%3aUd_7h%29.CNhs13556.13307-142I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor1 (868_121:Ud_7h)_CNhs13556_13307-142I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13307-142I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor1868_121Ud_7h_CNhs13556_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13307-142I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF240OTM ENCSR000DUX Signal bigWig Fibroblast of pulmonary artery CTCF ENCSR000DUX signal 2 855 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/815e6e4a-1162-48dd-b6e1-744ca951e931/ENCFF240OTM.bigWig\ color 255,37,41\ longLabel Fibroblast of pulmonary artery CTCF ENCSR000DUX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DUX Signal\ track wgEncodeReg4TfChip_ENCFF240OTM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF742MAQ ENCSR024WOD Peak bigBed 5 GM21390 ATAC peak 4 855 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/1459947a-e966-4996-860d-903678253a05/ENCFF742MAQ.bigBed\ color 2,199,185\ longLabel GM21390 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR024WOD Peak\ track wgEncodeReg4Epigenetics_ENCFF742MAQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF417XMH ENCSR815NTL + strand bigWig MCF 10A + strand total RNA-seq signal 2 855 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/e856d455-029b-4e30-9dab-4f6351aeb379/ENCFF417XMH.bigWig\ color 65,171,173\ longLabel MCF 10A + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR815NTL + strand\ track wgEncodeReg4RnaSeq_ENCFF417XMH\ type bigWig\ visibility full\ encTfChipPkENCFF160RLI MCF-7 FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in MCF-7 from ENCODE 3 (ENCFF160RLI) 0 855 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in MCF-7 from ENCODE 3 (ENCFF160RLI)\ parent encTfChipPk off\ shortLabel MCF-7 FOXA1\ subGroups cellType=MCF-7 factor=FOXA1\ track encTfChipPkENCFF160RLI\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward 0 855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward 1 855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF505HVQ ENCSR000DVA Peak bigBed 5 Fibroblast of lung CTCF peaks 4 856 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/c8d81b64-2ca2-4ee4-882a-dd1a082c0fab/ENCFF505HVQ.bigBed\ labelFields none\ longLabel Fibroblast of lung CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF505HVQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF298GXE ENCSR024WOD Signal bigWig GM21390 ATAC signal 2 856 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/9133bebc-e0bc-475a-96b3-f720dba7d7eb/ENCFF298GXE.bigWig\ color 2,199,185\ longLabel GM21390 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR024WOD Signal\ track wgEncodeReg4Epigenetics_ENCFF298GXE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF284WTH ENCSR815NTL - strand bigWig MCF 10A - strand total RNA-seq signal 2 856 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/21/8848bfc6-dc99-40d8-9eed-8a0ccf03e120/ENCFF284WTH.bigWig\ color 65,171,173\ longLabel MCF 10A - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR815NTL - strand\ track wgEncodeReg4RnaSeq_ENCFF284WTH\ type bigWig\ visibility full\ encTfChipPkENCFF899MQW MCF-7 FOXK2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXK2 in MCF-7 from ENCODE 3 (ENCFF899MQW) 0 856 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of FOXK2 in MCF-7 from ENCODE 3 (ENCFF899MQW)\ parent encTfChipPk off\ shortLabel MCF-7 FOXK2\ subGroups cellType=MCF-7 factor=FOXK2\ track encTfChipPkENCFF899MQW\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse 0 856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse 1 856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor2%20%28150_120%3aUd_7h%29.CNhs13559.13319-143A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor2 (150_120:Ud_7h)_CNhs13559_13319-143A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13319-143A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor2150_120Ud_7h_CNhs13559_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13319-143A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF004BWD ENCSR000DVA Signal bigWig Fibroblast of lung CTCF ENCSR000DVA signal 2 857 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/024c5679-8b3d-4ed6-8c27-20525e4c22d3/ENCFF004BWD.bigWig\ color 130,163,45\ longLabel Fibroblast of lung CTCF ENCSR000DVA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVA Signal\ track wgEncodeReg4TfChip_ENCFF004BWD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF615MWF ENCSR025BWH Peak bigBed 5 CD8-positive, alpha-beta memory T cell male adult 24 years DNase peak 4 857 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/f38636c3-98f5-4cf6-9c2e-36be3a6a9960/ENCFF615MWF.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta memory T cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025BWH Peak\ track wgEncodeReg4Epigenetics_ENCFF615MWF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF880SCY ENCSR815UVL + strand bigWig Mammary microvascular endothelial cell female adult (26 years) + strand total RNA-seq signal 2 857 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/500cbde0-d27a-4795-b318-d465cefdcd54/ENCFF880SCY.bigWig\ color 255,37,41\ longLabel Mammary microvascular endothelial cell female adult (26 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR815UVL + strand\ track wgEncodeReg4RnaSeq_ENCFF880SCY\ type bigWig\ visibility full\ encTfChipPkENCFF625IUE MCF-7 GATA3 narrowPeak Transcription Factor ChIP-seq Peaks of GATA3 in MCF-7 from ENCODE 3 (ENCFF625IUE) 0 857 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of GATA3 in MCF-7 from ENCODE 3 (ENCFF625IUE)\ parent encTfChipPk off\ shortLabel MCF-7 GATA3\ subGroups cellType=MCF-7 factor=GATA3\ track encTfChipPkENCFF625IUE\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward 0 857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward 1 857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF173LWY ENCSR000DVH Peak bigBed 5 Kidney epithelial cell CTCF peaks 4 858 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/19f5ee17-643a-4c94-a555-1469fb813d8e/ENCFF173LWY.bigBed\ labelFields none\ longLabel Kidney epithelial cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF173LWY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF887FZH ENCSR025BWH Signal bigWig CD8-positive, alpha-beta memory T cell male adult 24 years DNase signal 2 858 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/43d9bb57-0116-43b8-8412-5bc27bb33939/ENCFF887FZH.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta memory T cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025BWH Signal\ track wgEncodeReg4Epigenetics_ENCFF887FZH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF602PTU ENCSR815UVL - strand bigWig Mammary microvascular endothelial cell female adult (26 years) - strand total RNA-seq signal 2 858 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/17/4e249ff4-87f8-47c0-a673-16dc06a37b6b/ENCFF602PTU.bigWig\ color 255,37,41\ longLabel Mammary microvascular endothelial cell female adult (26 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR815UVL - strand\ track wgEncodeReg4RnaSeq_ENCFF602PTU\ type bigWig\ visibility full\ encTfChipPkENCFF191SBE MCF-7 GATAD2B 1 narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF191SBE) 0 858 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF191SBE)\ parent encTfChipPk off\ shortLabel MCF-7 GATAD2B 1\ subGroups cellType=MCF-7 factor=GATAD2B\ track encTfChipPkENCFF191SBE\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse 0 858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse 1 858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor3%20%28536_119%3aUd_7h%29.CNhs13561.13325-143B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor3 (536_119:Ud_7h)_CNhs13561_13325-143B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13325-143B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor3536_119Ud_7h_CNhs13561_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13325-143B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF518OZL ENCSR000DVH Signal bigWig Kidney epithelial cell CTCF ENCSR000DVH signal 2 859 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/681309f7-86b0-4e6f-8eba-1a7136227591/ENCFF518OZL.bigWig\ color 92,161,153\ longLabel Kidney epithelial cell CTCF ENCSR000DVH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVH Signal\ track wgEncodeReg4TfChip_ENCFF518OZL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF390ZHA ENCSR025EYJ Peak bigBed 5 T-cell male adult 48 years DNase peak 4 859 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/54079950-868b-4f9e-b456-3880e7dfa88e/ENCFF390ZHA.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 48 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025EYJ Peak\ track wgEncodeReg4Epigenetics_ENCFF390ZHA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF573JBK ENCSR816HLU + strand bigWig Left lung tissue male adult (40 years) + strand total RNA-seq signal 2 859 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/57e7310f-1bea-46fc-bca1-af6f9e17d090/ENCFF573JBK.bigWig\ color 130,163,45\ longLabel Left lung tissue male adult (40 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR816HLU + strand\ track wgEncodeReg4RnaSeq_ENCFF573JBK\ type bigWig\ visibility full\ encTfChipPkENCFF046BRP MCF-7 GATAD2B 2 narrowPeak Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF046BRP) 0 859 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of GATAD2B in MCF-7 from ENCODE 3 (ENCFF046BRP)\ parent encTfChipPk off\ shortLabel MCF-7 GATAD2B 2\ subGroups cellType=MCF-7 factor=GATAD2B\ track encTfChipPkENCFF046BRP\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_fwd MonocyteMacrophageUdornInfluenza_07hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward 0 859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_fwd MonocyteMacrophageUdornInfluenza_07hr00minD4+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward 1 859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF810AAG ENCSR000DVI Peak bigBed 5 Retinal pigment epithelial cell CTCF peaks 4 860 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/d758deda-4259-4c57-8b38-cd88f02ca684/ENCFF810AAG.bigBed\ labelFields none\ longLabel Retinal pigment epithelial cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF810AAG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF540HZY ENCSR025EYJ Signal bigWig T-cell male adult 48 years DNase signal 2 860 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/44a10a62-9721-4989-ac6c-1fd6f81ffd04/ENCFF540HZY.bigWig\ color 6,218,147\ longLabel T-cell male adult 48 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025EYJ Signal\ track wgEncodeReg4Epigenetics_ENCFF540HZY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF580NQN ENCSR816HLU - strand bigWig Left lung tissue male adult (40 years) - strand total RNA-seq signal 2 860 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/e2a1403b-29f8-4dcc-b548-87b9cbd5e686/ENCFF580NQN.bigWig\ color 130,163,45\ longLabel Left lung tissue male adult (40 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR816HLU - strand\ track wgEncodeReg4RnaSeq_ENCFF580NQN\ type bigWig\ visibility full\ encTfChipPkENCFF401IAI MCF-7 HCFC1 narrowPeak Transcription Factor ChIP-seq Peaks of HCFC1 in MCF-7 from ENCODE 3 (ENCFF401IAI) 0 860 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of HCFC1 in MCF-7 from ENCODE 3 (ENCFF401IAI)\ parent encTfChipPk off\ shortLabel MCF-7 HCFC1\ subGroups cellType=MCF-7 factor=HCFC1\ track encTfChipPkENCFF401IAI\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_rev MonocyteMacrophageUdornInfluenza_07hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse 0 860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_rev MonocyteMacrophageUdornInfluenza_07hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse 1 860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2007hr00min%2c%20donor4%20%28227_121%3aUd_7h%29.CNhs13641.13313-143A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 07hr00min, donor4 (227_121:Ud_7h)_CNhs13641_13313-143A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13313-143A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_07hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection07hr00minDonor4227_121Ud_7h_CNhs13641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13313-143A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF313KFS ENCSR000DVI Signal bigWig Retinal pigment epithelial cell CTCF ENCSR000DVI signal 2 861 163 127 144 209 191 199 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ec284e18-04b1-4234-ab5e-97e531572a92/ENCFF313KFS.bigWig\ color 163,127,144\ longLabel Retinal pigment epithelial cell CTCF ENCSR000DVI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVI Signal\ track wgEncodeReg4TfChip_ENCFF313KFS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF050GXO ENCSR025KPY Peak bigBed 5 Middle frontal area 46 tissue male adult 78 years H3K27ac peak 4 861 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/bd8358bd-6b85-4fdb-9dd6-4cfe173f09fe/ENCFF050GXO.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 78 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025KPY Peak\ track wgEncodeReg4Epigenetics_ENCFF050GXO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF740HBZ ENCSR816IZA + strand bigWig Upper lobe of right lung tissue male adult (60 years) + strand total RNA-seq signal 2 861 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/e324ad7a-0487-4780-88cc-e250697c87e5/ENCFF740HBZ.bigWig\ color 130,163,45\ longLabel Upper lobe of right lung tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR816IZA + strand\ track wgEncodeReg4RnaSeq_ENCFF740HBZ\ type bigWig\ visibility full\ encTfChipPkENCFF144OPN MCF-7 HES1 narrowPeak Transcription Factor ChIP-seq Peaks of HES1 in MCF-7 from ENCODE 3 (ENCFF144OPN) 0 861 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of HES1 in MCF-7 from ENCODE 3 (ENCFF144OPN)\ parent encTfChipPk off\ shortLabel MCF-7 HES1\ subGroups cellType=MCF-7 factor=HES1\ track encTfChipPkENCFF144OPN\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_fwd MonocyteMacrophageUdornInfluenza_24hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward 0 861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_fwd MonocyteMacrophageUdornInfluenza_24hr00minD1+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward 1 861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF677IZD ENCSR000DVP Peak bigBed 5 Endothelial cell of umbilical vein male newborn CTCF peaks 4 862 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/2d2969df-cfc0-4295-ba11-0457e7d436a3/ENCFF677IZD.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein male newborn CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF677IZD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF973ZFT ENCSR025KPY Signal bigWig Middle frontal area 46 tissue male adult 78 years H3K27ac signal 2 862 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/c2af1ef3-32d9-4a30-aac3-e353b888bcc3/ENCFF973ZFT.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 78 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025KPY Signal\ track wgEncodeReg4Epigenetics_ENCFF973ZFT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF913RSU ENCSR816IZA - strand bigWig Upper lobe of right lung tissue male adult (60 years) - strand total RNA-seq signal 2 862 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/03f5f12e-f810-4378-9802-d0def30f3b2b/ENCFF913RSU.bigWig\ color 130,163,45\ longLabel Upper lobe of right lung tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR816IZA - strand\ track wgEncodeReg4RnaSeq_ENCFF913RSU\ type bigWig\ visibility full\ encTfChipPkENCFF708ACK MCF-7 HSF1 narrowPeak Transcription Factor ChIP-seq Peaks of HSF1 in MCF-7 from ENCODE 3 (ENCFF708ACK) 0 862 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of HSF1 in MCF-7 from ENCODE 3 (ENCFF708ACK)\ parent encTfChipPk off\ shortLabel MCF-7 HSF1\ subGroups cellType=MCF-7 factor=HSF1\ track encTfChipPkENCFF708ACK\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse 0 862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_rev MonocyteMacrophageUdornInfluenza_24hr00minD1- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse 1 862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aUd_24h%29.CNhs13557.13308-142I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor1 (868_121:Ud_24h)_CNhs13557_13308-142I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13308-142I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor1868_121Ud_24h_CNhs13557_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13308-142I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF105ZMP ENCSR000DVP Signal bigWig Endothelial cell of umbilical vein male newborn CTCF ENCSR000DVP signal 2 863 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/259c12cf-19e0-4ce6-973d-b0a39bd36114/ENCFF105ZMP.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein male newborn CTCF ENCSR000DVP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVP Signal\ track wgEncodeReg4TfChip_ENCFF105ZMP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF986FBJ ENCSR025MEO Peak bigBed 5 HG03354 ATAC peak 4 863 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/5bade498-73b8-4f16-bc54-d57dd06bffb9/ENCFF986FBJ.bigBed\ color 2,199,185\ longLabel HG03354 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025MEO Peak\ track wgEncodeReg4Epigenetics_ENCFF986FBJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF840DDQ ENCSR817WHQ + strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 863 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/9064c0e7-8c7f-49b3-9a45-997f7d891380/ENCFF840DDQ.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR817WHQ + strand\ track wgEncodeReg4RnaSeq_ENCFF840DDQ\ type bigWig\ visibility full\ encTfChipPkENCFF907UNK MCF-7 JUN narrowPeak Transcription Factor ChIP-seq Peaks of JUN in MCF-7 from ENCODE 3 (ENCFF907UNK) 0 863 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of JUN in MCF-7 from ENCODE 3 (ENCFF907UNK)\ parent encTfChipPk off\ shortLabel MCF-7 JUN\ subGroups cellType=MCF-7 factor=JUN\ track encTfChipPkENCFF907UNK\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_fwd MonocyteMacrophageUdornInfluenza_24hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward 0 863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_fwd MonocyteMacrophageUdornInfluenza_24hr00minD2+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward 1 863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF345VQO ENCSR000DVQ Peak bigBed 5 Fibroblast of villous mesenchyme CTCF peaks 4 864 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/c0713c98-2560-4bc9-aef8-4a3e95c220b1/ENCFF345VQO.bigBed\ labelFields none\ longLabel Fibroblast of villous mesenchyme CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF345VQO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF727GJN ENCSR025MEO Signal bigWig HG03354 ATAC signal 2 864 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/c9c21d80-8458-4ae2-8953-15f6522edc08/ENCFF727GJN.bigWig\ color 2,199,185\ longLabel HG03354 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR025MEO Signal\ track wgEncodeReg4Epigenetics_ENCFF727GJN\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF980OGB ENCSR817WHQ - strand bigWig Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 864 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/ef2292a3-aabb-45bc-8caa-92ed47dfb979/ENCFF980OGB.bigWig\ color 254,75,173\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR817WHQ - strand\ track wgEncodeReg4RnaSeq_ENCFF980OGB\ type bigWig\ visibility full\ encTfChipPkENCFF569ZCY MCF-7 JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in MCF-7 from ENCODE 3 (ENCFF569ZCY) 0 864 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in MCF-7 from ENCODE 3 (ENCFF569ZCY)\ parent encTfChipPk off\ shortLabel MCF-7 JUND\ subGroups cellType=MCF-7 factor=JUND\ track encTfChipPkENCFF569ZCY\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse 0 864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_rev MonocyteMacrophageUdornInfluenza_24hr00minD2- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse 1 864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aUd_24h%29.CNhs13560.13320-143A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor2 (150_120:Ud_24h)_CNhs13560_13320-143A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13320-143A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor2150_120Ud_24h_CNhs13560_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13320-143A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF666CXN ENCSR000DVQ Signal bigWig Fibroblast of villous mesenchyme CTCF ENCSR000DVQ signal 2 865 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e12f9e05-6235-45f9-b0f3-6d1c930564f8/ENCFF666CXN.bigWig\ color 104,171,71\ longLabel Fibroblast of villous mesenchyme CTCF ENCSR000DVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DVQ Signal\ track wgEncodeReg4TfChip_ENCFF666CXN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF676PJP ENCSR026EOM Peak bigBed 5 Brain tissue female embryo 85 days DNase peak 4 865 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d753e10c-e5c0-4cc4-9218-c29bfd2b9478/ENCFF676PJP.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue female embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR026EOM Peak\ track wgEncodeReg4Epigenetics_ENCFF676PJP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF403PZE ENCSR818DBU + strand bigWig Cardiac septum tissue female adult (41 years) + strand total RNA-seq signal 2 865 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/d7933bab-e80a-41a3-9d90-0855cb368765/ENCFF403PZE.bigWig\ color 116,50,165\ longLabel Cardiac septum tissue female adult (41 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR818DBU + strand\ track wgEncodeReg4RnaSeq_ENCFF403PZE\ type bigWig\ visibility full\ encTfChipPkENCFF873SVI MCF-7 MAFK narrowPeak Transcription Factor ChIP-seq Peaks of MAFK in MCF-7 from ENCODE 3 (ENCFF873SVI) 0 865 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MAFK in MCF-7 from ENCODE 3 (ENCFF873SVI)\ parent encTfChipPk off\ shortLabel MCF-7 MAFK\ subGroups cellType=MCF-7 factor=MAFK\ track encTfChipPkENCFF873SVI\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_fwd MonocyteMacrophageUdornInfluenza_24hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward 0 865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_fwd MonocyteMacrophageUdornInfluenza_24hr00minD3+ bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward 1 865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF598YSU ENCSR000DWE Peak bigBed 5 K562 CTCF peaks 4 866 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/d39b3f02-d1ef-4e23-a845-3793ba3375e6/ENCFF598YSU.bigBed\ labelFields none\ longLabel K562 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF598YSU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF703BCO ENCSR026EOM Signal bigWig Brain tissue female embryo 85 days DNase signal 2 866 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/14312113-8253-42ab-b5ed-081866af89f8/ENCFF703BCO.bigWig\ color 6,218,147\ longLabel Brain tissue female embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR026EOM Signal\ track wgEncodeReg4Epigenetics_ENCFF703BCO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF007MZH ENCSR818DBU - strand bigWig Cardiac septum tissue female adult (41 years) - strand total RNA-seq signal 2 866 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/2974f8b2-88bb-474e-90f0-7389929b3535/ENCFF007MZH.bigWig\ color 116,50,165\ longLabel Cardiac septum tissue female adult (41 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR818DBU - strand\ track wgEncodeReg4RnaSeq_ENCFF007MZH\ type bigWig\ visibility full\ encTfChipPkENCFF464QAL MCF-7 MBD2 narrowPeak Transcription Factor ChIP-seq Peaks of MBD2 in MCF-7 from ENCODE 3 (ENCFF464QAL) 0 866 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MBD2 in MCF-7 from ENCODE 3 (ENCFF464QAL)\ parent encTfChipPk off\ shortLabel MCF-7 MBD2\ subGroups cellType=MCF-7 factor=MBD2\ track encTfChipPkENCFF464QAL\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse 0 866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_rev MonocyteMacrophageUdornInfluenza_24hr00minD3- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse 1 866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aUd_24h%29.CNhs13562.13326-143B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor3 (536_119:Ud_24h)_CNhs13562_13326-143B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13326-143B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor3536_119Ud_24h_CNhs13562_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13326-143B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF534ITO ENCSR000DWE Signal bigWig K562 CTCF ENCSR000DWE signal 2 867 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/6f2fa434-cb1d-4935-b20f-ef161f5763a0/ENCFF534ITO.bigWig\ color 254,75,173\ longLabel K562 CTCF ENCSR000DWE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWE Signal\ track wgEncodeReg4TfChip_ENCFF534ITO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF277NLT ENCSR027FSZ Peak bigBed 5 Upper lobe of left lung tissue male adult 37 years CTCF peak 4 867 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/be6221d0-1ee2-4f43-9dd4-e390e5e34e2d/ENCFF277NLT.bigBed\ color 0,176,240\ labelFields none\ longLabel Upper lobe of left lung tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR027FSZ Peak\ track wgEncodeReg4Epigenetics_ENCFF277NLT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF045JED ENCSR820IIL + strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 867 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/d05cde85-51e4-45da-b104-fb1656e37fcc/ENCFF045JED.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR820IIL + strand\ track wgEncodeReg4RnaSeq_ENCFF045JED\ type bigWig\ visibility full\ encTfChipPkENCFF578NMN MCF-7 MLLT1 narrowPeak Transcription Factor ChIP-seq Peaks of MLLT1 in MCF-7 from ENCODE 3 (ENCFF578NMN) 0 867 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MLLT1 in MCF-7 from ENCODE 3 (ENCFF578NMN)\ parent encTfChipPk off\ shortLabel MCF-7 MLLT1\ subGroups cellType=MCF-7 factor=MLLT1\ track encTfChipPkENCFF578NMN\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_fwd Tc:MdmToMock_00hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward 0 867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_fwd Tc:MdmToMock_00hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward 1 867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF139NQI ENCSR000DWH Peak bigBed 5 MCF-7 CTCF peaks 4 868 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/823970df-bc4e-44fe-94dd-72757bb0d10a/ENCFF139NQI.bigBed\ labelFields none\ longLabel MCF-7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF139NQI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF862ZOO ENCSR027FSZ Signal bigWig Upper lobe of left lung tissue male adult 37 years CTCF signal 2 868 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/a58c5e26-9d7e-492e-b7e4-8bf36f13177b/ENCFF862ZOO.bigWig\ color 0,176,240\ longLabel Upper lobe of left lung tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR027FSZ Signal\ track wgEncodeReg4Epigenetics_ENCFF862ZOO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF083LEJ ENCSR820IIL - strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 868 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/b8f543f2-80fa-470c-9037-7ead0b6fd078/ENCFF083LEJ.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR820IIL - strand\ track wgEncodeReg4RnaSeq_ENCFF083LEJ\ type bigWig\ visibility full\ encTfChipPkENCFF403BWK MCF-7 MNT 1 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF403BWK) 0 868 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF403BWK)\ parent encTfChipPk off\ shortLabel MCF-7 MNT 1\ subGroups cellType=MCF-7 factor=MNT\ track encTfChipPkENCFF403BWK\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_rev Tc:MdmToMock_00hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse 0 868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_rev Tc:MdmToMock_00hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse 1 868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor2%20%28150_120%3aMI_0h%29.CNhs13645.13316-143A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor2 (150_120:MI_0h)_CNhs13645_13316-143A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13316-143A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor2150_120MI_0h_CNhs13645_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13316-143A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF662LGI ENCSR000DWH Signal bigWig MCF-7 CTCF ENCSR000DWH signal 2 869 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/43f960d3-c4b6-4e43-add7-af31538a18ae/ENCFF662LGI.bigWig\ color 65,171,173\ longLabel MCF-7 CTCF ENCSR000DWH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWH Signal\ track wgEncodeReg4TfChip_ENCFF662LGI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF086AXQ ENCSR027HML Peak bigBed 5 OCI-LY7 CTCF peak 4 869 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5fc1f002-fbeb-4724-a475-beb93b32cf7e/ENCFF086AXQ.bigBed\ color 0,176,240\ labelFields none\ longLabel OCI-LY7 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR027HML Peak\ track wgEncodeReg4Epigenetics_ENCFF086AXQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF902WWV ENCSR820PHH + strand bigWig GM12878 + strand total RNA-seq signal 2 869 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/320dc832-8b53-4ca9-b246-9f9e06851271/ENCFF902WWV.bigWig\ color 254,75,173\ longLabel GM12878 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR820PHH + strand\ track wgEncodeReg4RnaSeq_ENCFF902WWV\ type bigWig\ visibility full\ encTfChipPkENCFF432GSK MCF-7 MNT 2 narrowPeak Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF432GSK) 0 869 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MNT in MCF-7 from ENCODE 3 (ENCFF432GSK)\ parent encTfChipPk off\ shortLabel MCF-7 MNT 2\ subGroups cellType=MCF-7 factor=MNT\ track encTfChipPkENCFF432GSK\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_fwd Tc:MdmToMock_00hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward 0 869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_fwd Tc:MdmToMock_00hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward 1 869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF155DNY ENCSR000DWN Peak bigBed 5 NB4 CTCF peaks 4 870 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9d8095f8-c4ef-4995-a76b-252b439f8656/ENCFF155DNY.bigBed\ labelFields none\ longLabel NB4 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF155DNY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF975BGM ENCSR027HML Signal bigWig OCI-LY7 CTCF signal 2 870 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e0602241-33fa-450a-bffa-4546baedb4ae/ENCFF975BGM.bigWig\ color 0,176,240\ longLabel OCI-LY7 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR027HML Signal\ track wgEncodeReg4Epigenetics_ENCFF975BGM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF965VYA ENCSR820PHH - strand bigWig GM12878 - strand total RNA-seq signal 2 870 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/edc6b4d0-00b4-4639-adce-86cd044f1abd/ENCFF965VYA.bigWig\ color 254,75,173\ longLabel GM12878 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR820PHH - strand\ track wgEncodeReg4RnaSeq_ENCFF965VYA\ type bigWig\ visibility full\ encTfChipPkENCFF225VFR MCF-7 MTA1 narrowPeak Transcription Factor ChIP-seq Peaks of MTA1 in MCF-7 from ENCODE 3 (ENCFF225VFR) 0 870 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA1 in MCF-7 from ENCODE 3 (ENCFF225VFR)\ parent encTfChipPk off\ shortLabel MCF-7 MTA1\ subGroups cellType=MCF-7 factor=MTA1\ track encTfChipPkENCFF225VFR\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_rev Tc:MdmToMock_00hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse 0 870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_rev Tc:MdmToMock_00hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse 1 870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor3%20%28536_119%3aMI_0h%29.CNhs13649.13322-143B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor3 (536_119:MI_0h)_CNhs13649_13322-143B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13322-143B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor3536_119MI_0h_CNhs13649_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13322-143B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF740SMV ENCSR000DWN Signal bigWig NB4 CTCF ENCSR000DWN signal 2 871 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/01e5b290-284c-4ccd-822a-e52bbc82b72a/ENCFF740SMV.bigWig\ color 2,199,185\ longLabel NB4 CTCF ENCSR000DWN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWN Signal\ track wgEncodeReg4TfChip_ENCFF740SMV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF849WPJ ENCSR028NXO Peak bigBed 5 Heart right ventricle tissue male child 3 years H3K27ac peak 4 871 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ac5c81e8-851d-4fb5-8df0-36fe15459ee3/ENCFF849WPJ.bigBed\ color 181,145,0\ longLabel Heart right ventricle tissue male child 3 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR028NXO Peak\ track wgEncodeReg4Epigenetics_ENCFF849WPJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF945IRO ENCSR822SUG + strand bigWig Airway epithelial cell + strand total RNA-seq signal 2 871 221 126 107 238 190 181 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/f39b99e2-26dd-4546-82fd-66a94ac74d44/ENCFF945IRO.bigWig\ color 221,126,107\ longLabel Airway epithelial cell + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR822SUG + strand\ track wgEncodeReg4RnaSeq_ENCFF945IRO\ type bigWig\ visibility full\ encTfChipPkENCFF180XXZ MCF-7 MTA2 narrowPeak Transcription Factor ChIP-seq Peaks of MTA2 in MCF-7 from ENCODE 3 (ENCFF180XXZ) 0 871 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA2 in MCF-7 from ENCODE 3 (ENCFF180XXZ)\ parent encTfChipPk off\ shortLabel MCF-7 MTA2\ subGroups cellType=MCF-7 factor=MTA2\ track encTfChipPkENCFF180XXZ\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_fwd Tc:MdmToMock_00hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward 0 871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_fwd Tc:MdmToMock_00hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward 1 871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF671HLG ENCSR000DWQ Peak bigBed 5 Foreskin fibroblast male newborn CTCF peaks 4 872 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/5497e79f-1849-4881-8343-a75fa0e07a7a/ENCFF671HLG.bigBed\ labelFields none\ longLabel Foreskin fibroblast male newborn CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF671HLG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF006WQG ENCSR028NXO Signal bigWig Heart right ventricle tissue male child 3 years H3K27ac signal 2 872 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d022c657-185a-4a09-bffb-e73dc805b7c7/ENCFF006WQG.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR028NXO Signal\ track wgEncodeReg4Epigenetics_ENCFF006WQG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF629LJJ ENCSR822SUG - strand bigWig Airway epithelial cell - strand total RNA-seq signal 2 872 221 126 107 238 190 181 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/3b451898-004b-47be-9f7c-cc9678b585ab/ENCFF629LJJ.bigWig\ color 221,126,107\ longLabel Airway epithelial cell - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR822SUG - strand\ track wgEncodeReg4RnaSeq_ENCFF629LJJ\ type bigWig\ visibility full\ encTfChipPkENCFF083AZM MCF-7 MTA3 narrowPeak Transcription Factor ChIP-seq Peaks of MTA3 in MCF-7 from ENCODE 3 (ENCFF083AZM) 0 872 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MTA3 in MCF-7 from ENCODE 3 (ENCFF083AZM)\ parent encTfChipPk off\ shortLabel MCF-7 MTA3\ subGroups cellType=MCF-7 factor=MTA3\ track encTfChipPkENCFF083AZM\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_rev Tc:MdmToMock_00hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse 0 872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_rev Tc:MdmToMock_00hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse 1 872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor4%20%28227_121%3aMI_0h%29.CNhs13638.13310-142I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor4 (227_121:MI_0h)_CNhs13638_13310-142I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13310-142I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor4227_121MI_0h_CNhs13638_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13310-142I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF076GOF ENCSR000DWQ Signal bigWig Foreskin fibroblast male newborn CTCF ENCSR000DWQ signal 2 873 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/11e9d059-170c-4e59-bf93-2cb8e1901003/ENCFF076GOF.bigWig\ color 127,133,209\ longLabel Foreskin fibroblast male newborn CTCF ENCSR000DWQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWQ Signal\ track wgEncodeReg4TfChip_ENCFF076GOF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF374NVI ENCSR028QEA Peak bigBed 5 Placenta tissue embryo 16 weeks H3K27ac peak 4 873 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/15a806cf-aee1-44e1-a024-b019d85906ef/ENCFF374NVI.bigBed\ color 181,145,0\ longLabel Placenta tissue embryo 16 weeks H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR028QEA Peak\ track wgEncodeReg4Epigenetics_ENCFF374NVI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF577ZXA ENCSR825UXP + strand bigWig Lower lobe of right lung tissue male adult (60 years) + strand total RNA-seq signal 2 873 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/9c78f3ac-9b38-4e76-a26c-202e54c8e4f3/ENCFF577ZXA.bigWig\ color 130,163,45\ longLabel Lower lobe of right lung tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR825UXP + strand\ track wgEncodeReg4RnaSeq_ENCFF577ZXA\ type bigWig\ visibility full\ encTfChipPkENCFF300OKR MCF-7 MYC 1 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF300OKR) 0 873 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF300OKR)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 1\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF300OKR\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_fwd Tc:MdmToMock_24hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward 0 873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_fwd Tc:MdmToMock_24hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward 1 873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF667ULX ENCSR000DWX Peak bigBed 5 Keratinocyte female CTCF peaks 4 874 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b35119fe-c763-4a81-8247-a4394066ce84/ENCFF667ULX.bigBed\ labelFields none\ longLabel Keratinocyte female CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF667ULX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF888PXY ENCSR028QEA Signal bigWig Placenta tissue embryo 16 weeks H3K27ac signal 2 874 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/30eaacd6-aa08-45c8-91db-f254f490be84/ENCFF888PXY.bigWig\ color 181,145,0\ longLabel Placenta tissue embryo 16 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR028QEA Signal\ track wgEncodeReg4Epigenetics_ENCFF888PXY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF469SUX ENCSR825UXP - strand bigWig Lower lobe of right lung tissue male adult (60 years) - strand total RNA-seq signal 2 874 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/949525bc-73ad-432c-a79a-31ac5e34e708/ENCFF469SUX.bigWig\ color 130,163,45\ longLabel Lower lobe of right lung tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR825UXP - strand\ track wgEncodeReg4RnaSeq_ENCFF469SUX\ type bigWig\ visibility full\ encTfChipPkENCFF658XME MCF-7 MYC 2 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF658XME) 0 874 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF658XME)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 2\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF658XME\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_rev Tc:MdmToMock_24hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse 0 874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_rev Tc:MdmToMock_24hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse 1 874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor1%20%28868_121%3aMI_24h%29.CNhs13693.13309-142I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor1 (868_121:MI_24h)_CNhs13693_13309-142I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13309-142I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor1868_121MI_24h_CNhs13693_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13309-142I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF668CCM ENCSR000DWX Signal bigWig Keratinocyte female CTCF ENCSR000DWX signal 2 875 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/2d53caf8-f11a-4576-88da-c65ff31fcb0c/ENCFF668CCM.bigWig\ color 127,133,209\ longLabel Keratinocyte female CTCF ENCSR000DWX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWX Signal\ track wgEncodeReg4TfChip_ENCFF668CCM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF878IYR ENCSR028YEV Peak bigBed 5 Spleen tissue male adult 54 years CTCF peak 4 875 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/88975eb1-3cd3-49c2-a706-33f1095ea717/ENCFF878IYR.bigBed\ color 0,176,240\ labelFields none\ longLabel Spleen tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR028YEV Peak\ track wgEncodeReg4Epigenetics_ENCFF878IYR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF835IFP ENCSR826FNO + strand bigWig Dorsolateral prefrontal cortex tissue male adult (84 years) + strand total RNA-seq signal 2 875 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/b33b1b02-9782-4ce1-8e2e-e9cc2028a337/ENCFF835IFP.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (84 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR826FNO + strand\ track wgEncodeReg4RnaSeq_ENCFF835IFP\ type bigWig\ visibility full\ encTfChipPkENCFF370EQJ MCF-7 MYC 3 narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF370EQJ) 0 875 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF-7 from ENCODE 3 (ENCFF370EQJ)\ parent encTfChipPk off\ shortLabel MCF-7 MYC 3\ subGroups cellType=MCF-7 factor=MYC\ track encTfChipPkENCFF370EQJ\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_fwd Tc:MdmToMock_24hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward 0 875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_fwd Tc:MdmToMock_24hr00minD2+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward 1 875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF084DUH ENCSR000DWY Peak bigBed 5 Fibroblast of lung male adult (45 years) CTCF peaks 4 876 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/4659f556-b380-4fb1-9cc2-6704bf61cb78/ENCFF084DUH.bigBed\ labelFields none\ longLabel Fibroblast of lung male adult (45 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF084DUH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF295PXU ENCSR028YEV Signal bigWig Spleen tissue male adult 54 years CTCF signal 2 876 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/e877c576-87d7-42a5-a35a-ac2485b4acdb/ENCFF295PXU.bigWig\ color 0,176,240\ longLabel Spleen tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR028YEV Signal\ track wgEncodeReg4Epigenetics_ENCFF295PXU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF175WIB ENCSR826FNO - strand bigWig Dorsolateral prefrontal cortex tissue male adult (84 years) - strand total RNA-seq signal 2 876 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/2542e958-e4d3-4a33-ad0e-148dd1faf4fe/ENCFF175WIB.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (84 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR826FNO - strand\ track wgEncodeReg4RnaSeq_ENCFF175WIB\ type bigWig\ visibility full\ encTfChipPkENCFF209WRW MCF-7 NBN narrowPeak Transcription Factor ChIP-seq Peaks of NBN in MCF-7 from ENCODE 3 (ENCFF209WRW) 0 876 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NBN in MCF-7 from ENCODE 3 (ENCFF209WRW)\ parent encTfChipPk off\ shortLabel MCF-7 NBN\ subGroups cellType=MCF-7 factor=NBN\ track encTfChipPkENCFF209WRW\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_rev Tc:MdmToMock_24hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse 0 876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_rev Tc:MdmToMock_24hr00minD2- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse 1 876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor2%20%28150_120%3aMI_24h%29.CNhs13648.13321-143A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor2 (150_120:MI_24h)_CNhs13648_13321-143A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13321-143A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor2150_120MI_24h_CNhs13648_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13321-143A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF141GXC ENCSR000DWY Signal bigWig Fibroblast of lung male adult (45 years) CTCF ENCSR000DWY signal 2 877 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/162fb387-9a72-4cd2-b88c-90eb20f92673/ENCFF141GXC.bigWig\ color 130,163,45\ longLabel Fibroblast of lung male adult (45 years) CTCF ENCSR000DWY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DWY Signal\ track wgEncodeReg4TfChip_ENCFF141GXC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF380GMC ENCSR029SIG Peak bigBed 5 Pancreas tissue female child 16 years H3K27ac peak 4 877 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/55f74c83-268a-431b-9a2c-e2f828f208ff/ENCFF380GMC.bigBed\ color 181,145,0\ longLabel Pancreas tissue female child 16 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR029SIG Peak\ track wgEncodeReg4Epigenetics_ENCFF380GMC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF118XUB ENCSR827IXS + strand bigWig Sigmoid colon tissue female adult (51 years) + strand total RNA-seq signal 2 877 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/7eb81e95-2ac8-43dc-947d-95677eb02713/ENCFF118XUB.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR827IXS + strand\ track wgEncodeReg4RnaSeq_ENCFF118XUB\ type bigWig\ visibility full\ encTfChipPkENCFF320TAN MCF-7 NCOA3 1 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF320TAN) 0 877 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF320TAN)\ parent encTfChipPk off\ shortLabel MCF-7 NCOA3 1\ subGroups cellType=MCF-7 factor=NCOA3\ track encTfChipPkENCFF320TAN\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_fwd Tc:MdmToMock_24hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward 0 877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_fwd Tc:MdmToMock_24hr00minD3+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward 1 877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF763ZKS ENCSR000DXD Peak bigBed 5 Epithelial cell of proximal tubule CTCF peaks 4 878 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/6d2598a8-8d99-4fb9-90cf-50b0b405f12c/ENCFF763ZKS.bigBed\ labelFields none\ longLabel Epithelial cell of proximal tubule CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DXD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF763ZKS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF827CBM ENCSR029SIG Signal bigWig Pancreas tissue female child 16 years H3K27ac signal 2 878 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/28/0a90e567-ab13-4ec5-8eb9-e1541c204792/ENCFF827CBM.bigWig\ color 181,145,0\ longLabel Pancreas tissue female child 16 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR029SIG Signal\ track wgEncodeReg4Epigenetics_ENCFF827CBM\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF527ISR ENCSR827IXS - strand bigWig Sigmoid colon tissue female adult (51 years) - strand total RNA-seq signal 2 878 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/4c683077-e572-46bb-9f95-18188b53345b/ENCFF527ISR.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR827IXS - strand\ track wgEncodeReg4RnaSeq_ENCFF527ISR\ type bigWig\ visibility full\ encTfChipPkENCFF510UNI MCF-7 NCOA3 2 narrowPeak Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF510UNI) 0 878 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NCOA3 in MCF-7 from ENCODE 3 (ENCFF510UNI)\ parent encTfChipPk off\ shortLabel MCF-7 NCOA3 2\ subGroups cellType=MCF-7 factor=NCOA3\ track encTfChipPkENCFF510UNI\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_rev Tc:MdmToMock_24hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse 0 878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_rev Tc:MdmToMock_24hr00minD3- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse 1 878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor3%20%28536_119%3aMI_24h%29.CNhs13652.13327-143B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor3 (536_119:MI_24h)_CNhs13652_13327-143B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13327-143B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor3536_119MI_24h_CNhs13652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13327-143B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF874ELT ENCSR000DXD Signal bigWig Epithelial cell of proximal tubule CTCF ENCSR000DXD signal 2 879 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/4490f129-38db-4fb4-bbc2-dd30953f68cc/ENCFF874ELT.bigWig\ color 92,161,153\ longLabel Epithelial cell of proximal tubule CTCF ENCSR000DXD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DXD Signal\ track wgEncodeReg4TfChip_ENCFF874ELT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF833PPE ENCSR030HFV Peak bigBed 5 Caco-2 DNase peak 4 879 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/bc21b6ee-1be8-42f5-86b0-41aa5e97f4b5/ENCFF833PPE.bigBed\ color 6,218,147\ labelFields none\ longLabel Caco-2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR030HFV Peak\ track wgEncodeReg4Epigenetics_ENCFF833PPE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF697ZFD ENCSR828JSJ + strand bigWig Heart right ventricle tissue male adult (69 years) + strand total RNA-seq signal 2 879 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/1d3e24f5-8728-402c-9cec-ce91ddc7a978/ENCFF697ZFD.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (69 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR828JSJ + strand\ track wgEncodeReg4RnaSeq_ENCFF697ZFD\ type bigWig\ visibility full\ encTfChipPkENCFF059LJD MCF-7 NEUROD1 narrowPeak Transcription Factor ChIP-seq Peaks of NEUROD1 in MCF-7 from ENCODE 3 (ENCFF059LJD) 0 879 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NEUROD1 in MCF-7 from ENCODE 3 (ENCFF059LJD)\ parent encTfChipPk off\ shortLabel MCF-7 NEUROD1\ subGroups cellType=MCF-7 factor=NEUROD1\ track encTfChipPkENCFF059LJD\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_fwd Tc:MdmToMock_24hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward 0 879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_fwd Tc:MdmToMock_24hr00minD4+ bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward 1 879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD4+\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF500SEA ENCSR000DXI Peak bigBed 5 Bronchial epithelial cell CTCF peaks 4 880 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/812db8f4-4d0f-447a-96a6-2357fc223ff9/ENCFF500SEA.bigBed\ labelFields none\ longLabel Bronchial epithelial cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DXI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF500SEA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF978IHV ENCSR030HFV Signal bigWig Caco-2 DNase signal 2 880 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/f1a51274-3252-477d-a998-dd9521705bb6/ENCFF978IHV.bigWig\ color 6,218,147\ longLabel Caco-2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR030HFV Signal\ track wgEncodeReg4Epigenetics_ENCFF978IHV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF316EVF ENCSR828JSJ - strand bigWig Heart right ventricle tissue male adult (69 years) - strand total RNA-seq signal 2 880 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/3cf7e11d-009d-4112-8b9d-bb332e3fe2ed/ENCFF316EVF.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (69 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR828JSJ - strand\ track wgEncodeReg4RnaSeq_ENCFF316EVF\ type bigWig\ visibility full\ encTfChipPkENCFF519XTN MCF-7 NFIB 1 narrowPeak Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF519XTN) 0 880 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF519XTN)\ parent encTfChipPk off\ shortLabel MCF-7 NFIB 1\ subGroups cellType=MCF-7 factor=NFIB\ track encTfChipPkENCFF519XTN\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_rev Tc:MdmToMock_24hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse 0 880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_24hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_rev Tc:MdmToMock_24hr00minD4- bigWig Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse 1 880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aMI_24h%29.CNhs13644.13315-143A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 24hr00min, donor4 (227_121:MI_24h)_CNhs13644_13315-143A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13315-143A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_24hr00minD4-\ subGroups sequenceTech=hCAGE category=Macrophage_influenza_infection strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection24hr00minDonor4227_121MI_24h_CNhs13644_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13315-143A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF365EIN ENCSR000DXI Signal bigWig Bronchial epithelial cell CTCF ENCSR000DXI signal 2 881 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/f039a3d0-6acd-4531-bcc7-fbaad5e9d83c/ENCFF365EIN.bigWig\ color 130,163,45\ longLabel Bronchial epithelial cell CTCF ENCSR000DXI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DXI Signal\ track wgEncodeReg4TfChip_ENCFF365EIN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF663LIE ENCSR031PXV Peak bigBed 5 Endothelial cell CTCF peak 4 881 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/12/0b70750a-ffb1-4fca-8ce4-603590bfea8a/ENCFF663LIE.bigBed\ color 0,176,240\ labelFields none\ longLabel Endothelial cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR031PXV Peak\ track wgEncodeReg4Epigenetics_ENCFF663LIE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF589DYO ENCSR828TEI + strand bigWig Myotube originated from skeletal muscle myoblast + strand total RNA-seq signal 2 881 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/4f57c51a-3913-4ae8-be6e-4ae38c8ab878/ENCFF589DYO.bigWig\ color 137,135,170\ longLabel Myotube originated from skeletal muscle myoblast + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR828TEI + strand\ track wgEncodeReg4RnaSeq_ENCFF589DYO\ type bigWig\ visibility full\ encTfChipPkENCFF385WUL MCF-7 NFIB 2 narrowPeak Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF385WUL) 0 881 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFIB in MCF-7 from ENCODE 3 (ENCFF385WUL)\ parent encTfChipPk off\ shortLabel MCF-7 NFIB 2\ subGroups cellType=MCF-7 factor=NFIB\ track encTfChipPkENCFF385WUL\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_fwd Tc:MdmToLps_00hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward 0 881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_fwd Tc:MdmToLps_00hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward 1 881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF349QKF ENCSR000DXW Peak bigBed 5 WERI-Rb-1 CTCF peaks 4 882 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/7e8e4516-8134-45dd-a939-95943fa7386b/ENCFF349QKF.bigBed\ labelFields none\ longLabel WERI-Rb-1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DXW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF349QKF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF084YDG ENCSR031PXV Signal bigWig Endothelial cell CTCF signal 2 882 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/12/d1503232-fc54-4eda-b62d-955fda3cbfe3/ENCFF084YDG.bigWig\ color 0,176,240\ longLabel Endothelial cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR031PXV Signal\ track wgEncodeReg4Epigenetics_ENCFF084YDG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF399CED ENCSR828TEI - strand bigWig Myotube originated from skeletal muscle myoblast - strand total RNA-seq signal 2 882 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/cd0635dd-b38b-43c7-831b-154112b98ae3/ENCFF399CED.bigWig\ color 137,135,170\ longLabel Myotube originated from skeletal muscle myoblast - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR828TEI - strand\ track wgEncodeReg4RnaSeq_ENCFF399CED\ type bigWig\ visibility full\ encTfChipPkENCFF895MJB MCF-7 NFRKB narrowPeak Transcription Factor ChIP-seq Peaks of NFRKB in MCF-7 from ENCODE 3 (ENCFF895MJB) 0 882 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFRKB in MCF-7 from ENCODE 3 (ENCFF895MJB)\ parent encTfChipPk off\ shortLabel MCF-7 NFRKB\ subGroups cellType=MCF-7 factor=NFRKB\ track encTfChipPkENCFF895MJB\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_rev Tc:MdmToLps_00hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse 0 882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_rev Tc:MdmToLps_00hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse 1 882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor1%20%28t1%20Subject1%29.CNhs11941.12698-135D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor1 (t1 Subject1)_CNhs11941_12698-135D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12698-135D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor1T1Subject1_CNhs11941_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12698-135D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF181ESK ENCSR000DXW Signal bigWig WERI-Rb-1 CTCF ENCSR000DXW signal 2 883 163 127 144 209 191 199 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/75d43ba1-776b-4595-9f92-745a78396eca/ENCFF181ESK.bigWig\ color 163,127,144\ longLabel WERI-Rb-1 CTCF ENCSR000DXW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DXW Signal\ track wgEncodeReg4TfChip_ENCFF181ESK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF787GFA ENCSR032BMQ Peak bigBed 5 Cingulate gyrus tissue male adult 81 years H3K4me3 peak 4 883 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/16cb2bd1-efba-477a-ae20-9ceb6e265c2b/ENCFF787GFA.bigBed\ color 255,0,0\ longLabel Cingulate gyrus tissue male adult 81 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR032BMQ Peak\ track wgEncodeReg4Epigenetics_ENCFF787GFA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF805LCX ENCSR831GLL + strand bigWig T-helper 17 cell male adult (50 years) + strand total RNA-seq signal 2 883 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/3779e16a-4475-42dc-b506-65792605bcfd/ENCFF805LCX.bigWig\ color 254,75,173\ longLabel T-helper 17 cell male adult (50 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR831GLL + strand\ track wgEncodeReg4RnaSeq_ENCFF805LCX\ type bigWig\ visibility full\ encTfChipPkENCFF927DIO MCF-7 NFXL1 narrowPeak Transcription Factor ChIP-seq Peaks of NFXL1 in MCF-7 from ENCODE 3 (ENCFF927DIO) 0 883 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NFXL1 in MCF-7 from ENCODE 3 (ENCFF927DIO)\ parent encTfChipPk off\ shortLabel MCF-7 NFXL1\ subGroups cellType=MCF-7 factor=NFXL1\ track encTfChipPkENCFF927DIO\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_fwd Tc:MdmToLps_00hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward 0 883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_fwd Tc:MdmToLps_00hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward 1 883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF219HOH ENCSR000DYB Peak bigBed 5 WI38 CTCF peaks 4 884 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/04/05/b0d084b4-57a1-4a20-8bc6-1f06e65c7198/ENCFF219HOH.bigBed\ labelFields none\ longLabel WI38 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF219HOH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF438QTX ENCSR032BMQ Signal bigWig Cingulate gyrus tissue male adult 81 years H3K4me3 signal 2 884 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/68c5dd2b-991a-4699-b0f7-2e95b5d2119a/ENCFF438QTX.bigWig\ color 255,0,0\ longLabel Cingulate gyrus tissue male adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR032BMQ Signal\ track wgEncodeReg4Epigenetics_ENCFF438QTX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF915OXI ENCSR831GLL - strand bigWig T-helper 17 cell male adult (50 years) - strand total RNA-seq signal 2 884 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/a796b37e-e148-4ac4-8369-56de337a6cba/ENCFF915OXI.bigWig\ color 254,75,173\ longLabel T-helper 17 cell male adult (50 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR831GLL - strand\ track wgEncodeReg4RnaSeq_ENCFF915OXI\ type bigWig\ visibility full\ encTfChipPkENCFF269RME MCF-7 NRF1 narrowPeak Transcription Factor ChIP-seq Peaks of NRF1 in MCF-7 from ENCODE 3 (ENCFF269RME) 0 884 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of NRF1 in MCF-7 from ENCODE 3 (ENCFF269RME)\ parent encTfChipPk off\ shortLabel MCF-7 NRF1\ subGroups cellType=MCF-7 factor=NRF1\ track encTfChipPkENCFF269RME\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_rev Tc:MdmToLps_00hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse 0 884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_rev Tc:MdmToLps_00hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse 1 884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor2%20%28t1%20Subject2%29.CNhs13379.12796-136F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor2 (t1 Subject2)_CNhs13379_12796-136F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12796-136F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor2T1Subject2_CNhs13379_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12796-136F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF902IOE ENCSR000DYB Signal bigWig WI38 CTCF ENCSR000DYB signal 2 885 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/261c4be4-e250-44b6-aa6e-fe5f4f5128a4/ENCFF902IOE.bigWig\ color 130,163,45\ longLabel WI38 CTCF ENCSR000DYB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYB Signal\ track wgEncodeReg4TfChip_ENCFF902IOE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF609PEN ENCSR032NNU Peak bigBed 5 Left cardiac atrium tissue female adult 59 years DNase peak 4 885 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/233489f3-9a79-4406-818a-1956482044ea/ENCFF609PEN.bigBed\ color 6,218,147\ labelFields none\ longLabel Left cardiac atrium tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR032NNU Peak\ track wgEncodeReg4Epigenetics_ENCFF609PEN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF706XIV ENCSR832YWU + strand bigWig Dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal 2 885 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/e9a22a4b-5827-4dea-8b42-fc215b6a5ab3/ENCFF706XIV.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR832YWU + strand\ track wgEncodeReg4RnaSeq_ENCFF706XIV\ type bigWig\ visibility full\ encTfChipPkENCFF473UHQ MCF-7 PAX8 narrowPeak Transcription Factor ChIP-seq Peaks of PAX8 in MCF-7 from ENCODE 3 (ENCFF473UHQ) 0 885 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of PAX8 in MCF-7 from ENCODE 3 (ENCFF473UHQ)\ parent encTfChipPk off\ shortLabel MCF-7 PAX8\ subGroups cellType=MCF-7 factor=PAX8\ track encTfChipPkENCFF473UHQ\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_fwd Tc:MdmToLps_00hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward 0 885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_fwd Tc:MdmToLps_00hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward 1 885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF722CWN ENCSR000DYC Peak bigBed 5 A549 MYC peaks 4 886 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4619b2d7-ce8f-44e1-ada2-275f87217c57/ENCFF722CWN.bigBed\ labelFields none\ longLabel A549 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF722CWN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF217MSL ENCSR032NNU Signal bigWig Left cardiac atrium tissue female adult 59 years DNase signal 2 886 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/69c05522-df3b-4d07-848b-d93b2af25b0f/ENCFF217MSL.bigWig\ color 6,218,147\ longLabel Left cardiac atrium tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR032NNU Signal\ track wgEncodeReg4Epigenetics_ENCFF217MSL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF145ZZI ENCSR832YWU - strand bigWig Dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal 2 886 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/aa32a843-b3d2-4c1e-8c1c-25e6fe3698e6/ENCFF145ZZI.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR832YWU - strand\ track wgEncodeReg4RnaSeq_ENCFF145ZZI\ type bigWig\ visibility full\ encTfChipPkENCFF105PFS MCF-7 PKNOX1 narrowPeak Transcription Factor ChIP-seq Peaks of PKNOX1 in MCF-7 from ENCODE 3 (ENCFF105PFS) 0 886 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of PKNOX1 in MCF-7 from ENCODE 3 (ENCFF105PFS)\ parent encTfChipPk off\ shortLabel MCF-7 PKNOX1\ subGroups cellType=MCF-7 factor=PKNOX1\ track encTfChipPkENCFF105PFS\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_rev Tc:MdmToLps_00hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse 0 886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_rev Tc:MdmToLps_00hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse 1 886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr00min%2c%20donor3%20%28t1%20Subject3%29.CNhs13174.12894-137H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr00min, donor3 (t1 Subject3)_CNhs13174_12894-137H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12894-137H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr00minDonor3T1Subject3_CNhs13174_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12894-137H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF030IDQ ENCSR000DYC Signal bigWig A549 MYC ENCSR000DYC signal 2 887 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/9ee5a72f-b20c-4499-bf84-82b732505829/ENCFF030IDQ.bigWig\ color 130,163,45\ longLabel A549 MYC ENCSR000DYC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYC Signal\ track wgEncodeReg4TfChip_ENCFF030IDQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF808YMI ENCSR032RGS Peak bigBed 5 A549 ATAC peak 4 887 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/01de2f91-aaef-4484-a517-1f137127df4b/ENCFF808YMI.bigBed\ color 2,199,185\ longLabel A549 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR032RGS Peak\ track wgEncodeReg4Epigenetics_ENCFF808YMI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF553FQR ENCSR837VMK + strand bigWig Heart left ventricle tissue female adult (46 years) + strand total RNA-seq signal 2 887 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/821417cf-3506-45f9-b9b2-1afd2016497e/ENCFF553FQR.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (46 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR837VMK + strand\ track wgEncodeReg4RnaSeq_ENCFF553FQR\ type bigWig\ visibility full\ encTfChipPkENCFF964EVA MCF-7 POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in MCF-7 from ENCODE 3 (ENCFF964EVA) 0 887 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of POLR2A in MCF-7 from ENCODE 3 (ENCFF964EVA)\ parent encTfChipPk off\ shortLabel MCF-7 POLR2A\ subGroups cellType=MCF-7 factor=POLR2A\ track encTfChipPkENCFF964EVA\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_fwd Tc:MdmToLps_00hr15minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward 0 887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_fwd Tc:MdmToLps_00hr15minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward 1 887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF434LUY ENCSR000DYD Peak bigBed 5 A549 CTCF peaks 4 888 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/71c624d3-0ccb-4d0d-ae1e-685d83051988/ENCFF434LUY.bigBed\ labelFields none\ longLabel A549 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF434LUY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF872SDF ENCSR032RGS Signal bigWig A549 ATAC signal 2 888 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/0b01a7f6-3cf2-4f6e-b49a-675703bf3776/ENCFF872SDF.bigWig\ color 2,199,185\ longLabel A549 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR032RGS Signal\ track wgEncodeReg4Epigenetics_ENCFF872SDF\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF013POY ENCSR837VMK - strand bigWig Heart left ventricle tissue female adult (46 years) - strand total RNA-seq signal 2 888 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/b708c348-18dd-4dd1-abb7-8309cc451b54/ENCFF013POY.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (46 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR837VMK - strand\ track wgEncodeReg4RnaSeq_ENCFF013POY\ type bigWig\ visibility full\ encTfChipPkENCFF091AYX MCF-7 RAD51 narrowPeak Transcription Factor ChIP-seq Peaks of RAD51 in MCF-7 from ENCODE 3 (ENCFF091AYX) 0 888 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD51 in MCF-7 from ENCODE 3 (ENCFF091AYX)\ parent encTfChipPk off\ shortLabel MCF-7 RAD51\ subGroups cellType=MCF-7 factor=RAD51\ track encTfChipPkENCFF091AYX\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_rev Tc:MdmToLps_00hr15minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse 0 888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_rev Tc:MdmToLps_00hr15minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse 1 888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor2%20%28t2%20Subject2%29.CNhs13380.12797-136F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor2 (t2 Subject2)_CNhs13380_12797-136F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12797-136F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor2T2Subject2_CNhs13380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12797-136F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF806UIF ENCSR000DYD Signal bigWig A549 CTCF ENCSR000DYD signal 2 889 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/45c82a1d-ac7c-4408-87bc-90858d2eed90/ENCFF806UIF.bigWig\ color 130,163,45\ longLabel A549 CTCF ENCSR000DYD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYD Signal\ track wgEncodeReg4TfChip_ENCFF806UIF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF356HNJ ENCSR033DQS Peak bigBed 5 Muscle of leg tissue male embryo 97 days DNase peak 4 889 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/22b4262a-1ae5-4fe9-925c-457a69c6e34c/ENCFF356HNJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033DQS Peak\ track wgEncodeReg4Epigenetics_ENCFF356HNJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF512AIP ENCSR837ZLY + strand bigWig Thoracic aorta tissue male adult (54 years) + strand total RNA-seq signal 2 889 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b58f9b62-068f-41c4-9dbf-92dfb21a50ba/ENCFF512AIP.bigWig\ color 255,37,41\ longLabel Thoracic aorta tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR837ZLY + strand\ track wgEncodeReg4RnaSeq_ENCFF512AIP\ type bigWig\ visibility full\ encTfChipPkENCFF838LXI MCF-7 RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in MCF-7 from ENCODE 3 (ENCFF838LXI) 0 889 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in MCF-7 from ENCODE 3 (ENCFF838LXI)\ parent encTfChipPk off\ shortLabel MCF-7 RCOR1\ subGroups cellType=MCF-7 factor=RCOR1\ track encTfChipPkENCFF838LXI\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_fwd Tc:MdmToLps_00hr15minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward 0 889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_fwd Tc:MdmToLps_00hr15minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward 1 889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF777QNW ENCSR000DYE Peak bigBed 5 A549 RAD21 peaks 4 890 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/6916dd53-db5a-48c4-874c-b85c683e4f6b/ENCFF777QNW.bigBed\ labelFields none\ longLabel A549 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF777QNW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF082AUZ ENCSR033DQS Signal bigWig Muscle of leg tissue male embryo 97 days DNase signal 2 890 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/822ad29b-6ed3-4245-99fb-3845cfb19d87/ENCFF082AUZ.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033DQS Signal\ track wgEncodeReg4Epigenetics_ENCFF082AUZ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF653MGF ENCSR837ZLY - strand bigWig Thoracic aorta tissue male adult (54 years) - strand total RNA-seq signal 2 890 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f7198199-d246-4fda-b72a-a1b136e12bfb/ENCFF653MGF.bigWig\ color 255,37,41\ longLabel Thoracic aorta tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR837ZLY - strand\ track wgEncodeReg4RnaSeq_ENCFF653MGF\ type bigWig\ visibility full\ encTfChipPkENCFF928YTD MCF-7 RFX1 1 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF928YTD) 0 890 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF928YTD)\ parent encTfChipPk off\ shortLabel MCF-7 RFX1 1\ subGroups cellType=MCF-7 factor=RFX1\ track encTfChipPkENCFF928YTD\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_rev Tc:MdmToLps_00hr15minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse 0 890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_rev Tc:MdmToLps_00hr15minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse 1 890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor3%20%28t2%20Subject3%29.CNhs13175.12895-137H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor3 (t2 Subject3)_CNhs13175_12895-137H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12895-137H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor3T2Subject3_CNhs13175_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12895-137H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF107UUA ENCSR000DYE Signal bigWig A549 RAD21 ENCSR000DYE signal 2 891 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/82ee43b9-b507-40e6-92a6-29cac7d0a16f/ENCFF107UUA.bigWig\ color 130,163,45\ longLabel A549 RAD21 ENCSR000DYE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYE Signal\ track wgEncodeReg4TfChip_ENCFF107UUA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF435ASB ENCSR033OKS Peak bigBed 5 Parathyroid adenoma tissue male adult 62 years H3K4me3 peak 4 891 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/f22d31e5-070d-4670-afab-532603210372/ENCFF435ASB.bigBed\ color 255,0,0\ longLabel Parathyroid adenoma tissue male adult 62 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033OKS Peak\ track wgEncodeReg4Epigenetics_ENCFF435ASB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF668DGV ENCSR838XNO + strand bigWig Mesenteric fat pad tissue female adult (59 years) + strand total RNA-seq signal 2 891 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/0fcbc0f3-8a4f-407b-8b84-9fdca873ada6/ENCFF668DGV.bigWig\ color 255,119,39\ longLabel Mesenteric fat pad tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR838XNO + strand\ track wgEncodeReg4RnaSeq_ENCFF668DGV\ type bigWig\ visibility full\ encTfChipPkENCFF150PTQ MCF-7 RFX1 2 narrowPeak Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF150PTQ) 0 891 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX1 in MCF-7 from ENCODE 3 (ENCFF150PTQ)\ parent encTfChipPk off\ shortLabel MCF-7 RFX1 2\ subGroups cellType=MCF-7 factor=RFX1\ track encTfChipPkENCFF150PTQ\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_fwd Tc:MdmToLps_00hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward 0 891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_fwd Tc:MdmToLps_00hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward 1 891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF034EBG ENCSR000DYF Peak bigBed 5 A549 POLR2AphosphoS2 peaks 4 892 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f4e1ecc5-1366-4210-af2a-5d621f1a4b60/ENCFF034EBG.bigBed\ labelFields none\ longLabel A549 POLR2AphosphoS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF034EBG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF673DXP ENCSR033OKS Signal bigWig Parathyroid adenoma tissue male adult 62 years H3K4me3 signal 2 892 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/06596cb5-2347-4a3f-8cf0-f4c354c0e7c6/ENCFF673DXP.bigWig\ color 255,0,0\ longLabel Parathyroid adenoma tissue male adult 62 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033OKS Signal\ track wgEncodeReg4Epigenetics_ENCFF673DXP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF912ZWS ENCSR838XNO - strand bigWig Mesenteric fat pad tissue female adult (59 years) - strand total RNA-seq signal 2 892 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/b907004b-8753-4a75-bb88-32b418be526a/ENCFF912ZWS.bigWig\ color 255,119,39\ longLabel Mesenteric fat pad tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR838XNO - strand\ track wgEncodeReg4RnaSeq_ENCFF912ZWS\ type bigWig\ visibility full\ encTfChipPkENCFF103MPW MCF-7 RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in MCF-7 from ENCODE 3 (ENCFF103MPW) 0 892 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in MCF-7 from ENCODE 3 (ENCFF103MPW)\ parent encTfChipPk off\ shortLabel MCF-7 RFX5\ subGroups cellType=MCF-7 factor=RFX5\ track encTfChipPkENCFF103MPW\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_rev Tc:MdmToLps_00hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse 0 892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_rev Tc:MdmToLps_00hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse 1 892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor2%20%28t3%20Subject2%29.CNhs13381.12798-136F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor2 (t3 Subject2)_CNhs13381_12798-136F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12798-136F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor2T3Subject2_CNhs13381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12798-136F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF565TJA ENCSR000DYF Signal bigWig A549 POLR2AphosphoS2 ENCSR000DYF signal 2 893 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/86d8e8d6-0b2a-4107-bf3e-cfcd8324ac22/ENCFF565TJA.bigWig\ color 130,163,45\ longLabel A549 POLR2AphosphoS2 ENCSR000DYF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYF Signal\ track wgEncodeReg4TfChip_ENCFF565TJA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF996PRE ENCSR033STL Peak bigBed 5 Muscle of back tissue female embryo 105 days DNase peak 4 893 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/9c91a796-ba21-49e8-9424-dc9a0d565c8e/ENCFF996PRE.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033STL Peak\ track wgEncodeReg4Epigenetics_ENCFF996PRE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF237XXC ENCSR839ZDH + strand bigWig Upper lobe of left lung tissue male adult (54 years) + strand total RNA-seq signal 2 893 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/61932e83-dbff-4f20-b44d-af452ed5e798/ENCFF237XXC.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR839ZDH + strand\ track wgEncodeReg4RnaSeq_ENCFF237XXC\ type bigWig\ visibility full\ encTfChipPkENCFF220RUS MCF-7 SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in MCF-7 from ENCODE 3 (ENCFF220RUS) 0 893 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in MCF-7 from ENCODE 3 (ENCFF220RUS)\ parent encTfChipPk off\ shortLabel MCF-7 SIN3A\ subGroups cellType=MCF-7 factor=SIN3A\ track encTfChipPkENCFF220RUS\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_fwd Tc:MdmToLps_00hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward 0 893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_fwd Tc:MdmToLps_00hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward 1 893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF985GDG ENCSR000DYG Peak bigBed 5 A549 MAX peaks 4 894 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/93d6ff7b-3d5d-4af0-9fdc-a8f161bf5a0b/ENCFF985GDG.bigBed\ labelFields none\ longLabel A549 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF985GDG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF619PMY ENCSR033STL Signal bigWig Muscle of back tissue female embryo 105 days DNase signal 2 894 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/1c01b870-c7d9-44f6-b794-23231a34b509/ENCFF619PMY.bigWig\ color 6,218,147\ longLabel Muscle of back tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033STL Signal\ track wgEncodeReg4Epigenetics_ENCFF619PMY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF824IYR ENCSR839ZDH - strand bigWig Upper lobe of left lung tissue male adult (54 years) - strand total RNA-seq signal 2 894 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/5b1e636b-0258-41ff-9e90-dcd64efb10be/ENCFF824IYR.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR839ZDH - strand\ track wgEncodeReg4RnaSeq_ENCFF824IYR\ type bigWig\ visibility full\ encTfChipPkENCFF441UHA MCF-7 SIX4 narrowPeak Transcription Factor ChIP-seq Peaks of SIX4 in MCF-7 from ENCODE 3 (ENCFF441UHA) 0 894 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SIX4 in MCF-7 from ENCODE 3 (ENCFF441UHA)\ parent encTfChipPk off\ shortLabel MCF-7 SIX4\ subGroups cellType=MCF-7 factor=SIX4\ track encTfChipPkENCFF441UHA\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_rev Tc:MdmToLps_00hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse 0 894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_rev Tc:MdmToLps_00hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse 1 894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor3%20%28t3%20Subject3%29.CNhs13176.12896-137H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor3 (t3 Subject3)_CNhs13176_12896-137H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12896-137H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor3T3Subject3_CNhs13176_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12896-137H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF269NYK ENCSR000DYG Signal bigWig A549 MAX ENCSR000DYG signal 2 895 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ed628ef2-2ab8-4f6a-8080-198b155b4533/ENCFF269NYK.bigWig\ color 130,163,45\ longLabel A549 MAX ENCSR000DYG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYG Signal\ track wgEncodeReg4TfChip_ENCFF269NYK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF590NGR ENCSR033WMA Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak 4 895 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/66544809-d2de-40c8-995e-634bfb293c86/ENCFF590NGR.bigBed\ color 181,145,0\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033WMA Peak\ track wgEncodeReg4Epigenetics_ENCFF590NGR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF368TTD ENCSR841ADZ + strand bigWig Ovary tissue female adult (53 years) + strand total RNA-seq signal 2 895 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bf838e6e-1c55-46e2-83dc-7123578747b3/ENCFF368TTD.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR841ADZ + strand\ track wgEncodeReg4RnaSeq_ENCFF368TTD\ type bigWig\ visibility full\ encTfChipPkENCFF618JNX MCF-7 SMARCA5 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA5 in MCF-7 from ENCODE 3 (ENCFF618JNX) 0 895 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCA5 in MCF-7 from ENCODE 3 (ENCFF618JNX)\ parent encTfChipPk off\ shortLabel MCF-7 SMARCA5\ subGroups cellType=MCF-7 factor=SMARCA5\ track encTfChipPkENCFF618JNX\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_fwd Tc:MdmToLps_00hr45minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward 0 895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_fwd Tc:MdmToLps_00hr45minD2+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward 1 895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF235AIY ENCSR000DYI Peak bigBed 5 A549 CEBPB peaks 4 896 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/74a53189-9761-469b-8869-21a9901fb1e1/ENCFF235AIY.bigBed\ labelFields none\ longLabel A549 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF235AIY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF169ABO ENCSR033WMA Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal 2 896 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/47878b61-f468-4a12-9274-45e6580d3124/ENCFF169ABO.bigWig\ color 181,145,0\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR033WMA Signal\ track wgEncodeReg4Epigenetics_ENCFF169ABO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF817YVL ENCSR841ADZ - strand bigWig Ovary tissue female adult (53 years) - strand total RNA-seq signal 2 896 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/5bfd9d2a-b7bd-4a0d-942c-cff6ce1ab087/ENCFF817YVL.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR841ADZ - strand\ track wgEncodeReg4RnaSeq_ENCFF817YVL\ type bigWig\ visibility full\ encTfChipPkENCFF761NKP MCF-7 SMARCE1 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCE1 in MCF-7 from ENCODE 3 (ENCFF761NKP) 0 896 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SMARCE1 in MCF-7 from ENCODE 3 (ENCFF761NKP)\ parent encTfChipPk off\ shortLabel MCF-7 SMARCE1\ subGroups cellType=MCF-7 factor=SMARCE1\ track encTfChipPkENCFF761NKP\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_rev Tc:MdmToLps_00hr45minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse 0 896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_rev Tc:MdmToLps_00hr45minD2- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse 1 896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor2%20%28t4%20Subject2%29.CNhs13382.12799-136F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor2 (t4 Subject2)_CNhs13382_12799-136F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12799-136F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor2T4Subject2_CNhs13382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12799-136F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF382KFX ENCSR000DYI Signal bigWig A549 CEBPB ENCSR000DYI signal 2 897 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/e131b42a-736f-46ce-9565-6e744df72a49/ENCFF382KFX.bigWig\ color 130,163,45\ longLabel A549 CEBPB ENCSR000DYI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYI Signal\ track wgEncodeReg4TfChip_ENCFF382KFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF074OYX ENCSR034RQV Peak bigBed 5 Parathyroid adenoma tissue male adult 65 years H3K27ac peak 4 897 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/33324e55-2565-42e4-b678-f018eb7940c2/ENCFF074OYX.bigBed\ color 181,145,0\ longLabel Parathyroid adenoma tissue male adult 65 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR034RQV Peak\ track wgEncodeReg4Epigenetics_ENCFF074OYX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF863HRX ENCSR841QAC + strand bigWig HFFc6 + strand total RNA-seq signal 2 897 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/0380c226-8ec0-40b8-bd93-01d24de587fa/ENCFF863HRX.bigWig\ color 20,74,159\ longLabel HFFc6 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR841QAC + strand\ track wgEncodeReg4RnaSeq_ENCFF863HRX\ type bigWig\ visibility full\ encTfChipPkENCFF577EMC MCF-7 SP1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in MCF-7 from ENCODE 3 (ENCFF577EMC) 0 897 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SP1 in MCF-7 from ENCODE 3 (ENCFF577EMC)\ parent encTfChipPk off\ shortLabel MCF-7 SP1\ subGroups cellType=MCF-7 factor=SP1\ track encTfChipPkENCFF577EMC\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_fwd Tc:MdmToLps_00hr45minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward 0 897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_fwd Tc:MdmToLps_00hr45minD3+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward 1 897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF980EQQ ENCSR000DYJ Peak bigBed 5 A549 BHLHE40 peaks 4 898 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/1eb887b3-d1fc-47be-a443-1397a1c90bb7/ENCFF980EQQ.bigBed\ labelFields none\ longLabel A549 BHLHE40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF980EQQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF386EOX ENCSR034RQV Signal bigWig Parathyroid adenoma tissue male adult 65 years H3K27ac signal 2 898 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/85f3744a-2aa1-4b5d-af69-07f8dbb1a754/ENCFF386EOX.bigWig\ color 181,145,0\ longLabel Parathyroid adenoma tissue male adult 65 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR034RQV Signal\ track wgEncodeReg4Epigenetics_ENCFF386EOX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF071FIS ENCSR841QAC - strand bigWig HFFc6 - strand total RNA-seq signal 2 898 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/be093ca9-d604-4613-8412-caed4a8711a8/ENCFF071FIS.bigWig\ color 20,74,159\ longLabel HFFc6 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR841QAC - strand\ track wgEncodeReg4RnaSeq_ENCFF071FIS\ type bigWig\ visibility full\ encTfChipPkENCFF275WAD MCF-7 SREBF1 narrowPeak Transcription Factor ChIP-seq Peaks of SREBF1 in MCF-7 from ENCODE 3 (ENCFF275WAD) 0 898 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SREBF1 in MCF-7 from ENCODE 3 (ENCFF275WAD)\ parent encTfChipPk off\ shortLabel MCF-7 SREBF1\ subGroups cellType=MCF-7 factor=SREBF1\ track encTfChipPkENCFF275WAD\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_rev Tc:MdmToLps_00hr45minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse 0 898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_rev Tc:MdmToLps_00hr45minD3- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse 1 898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor3%20%28t4%20Subject3%29.CNhs13177.12897-137H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor3 (t4 Subject3)_CNhs13177_12897-137H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12897-137H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor3T4Subject3_CNhs13177_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12897-137H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF775ERC ENCSR000DYJ Signal bigWig A549 BHLHE40 ENCSR000DYJ signal 2 899 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/e23b50d1-6792-4576-ad6a-033e10a1b011/ENCFF775ERC.bigWig\ color 130,163,45\ longLabel A549 BHLHE40 ENCSR000DYJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYJ Signal\ track wgEncodeReg4TfChip_ENCFF775ERC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF189UBB ENCSR034ZKE Peak bigBed 5 Breast epithelium tissue female adult 53 years H3K27ac peak 4 899 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/31961cf3-f097-4e5d-b957-2902fb351854/ENCFF189UBB.bigBed\ color 181,145,0\ longLabel Breast epithelium tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR034ZKE Peak\ track wgEncodeReg4Epigenetics_ENCFF189UBB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF822LOE ENCSR842NDO + strand bigWig Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours + strand total R 2 899 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/c1ad7ebf-6be5-4406-a1e1-b1bf9ad3b234/ENCFF822LOE.bigWig\ color 254,75,173\ longLabel Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR842NDO + strand\ track wgEncodeReg4RnaSeq_ENCFF822LOE\ type bigWig\ visibility full\ encTfChipPkENCFF258ZVN MCF-7 SUZ12 narrowPeak Transcription Factor ChIP-seq Peaks of SUZ12 in MCF-7 from ENCODE 3 (ENCFF258ZVN) 0 899 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of SUZ12 in MCF-7 from ENCODE 3 (ENCFF258ZVN)\ parent encTfChipPk off\ shortLabel MCF-7 SUZ12\ subGroups cellType=MCF-7 factor=SUZ12\ track encTfChipPkENCFF258ZVN\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_fwd Tc:MdmToLps_01hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward 0 899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_fwd Tc:MdmToLps_01hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward 1 899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF241PBX ENCSR000DYO Peak bigBed 5 GM10847 POLR2A peaks 4 900 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/63bbf59f-4c69-4a1c-8cad-379f77bc1b04/ENCFF241PBX.bigBed\ labelFields none\ longLabel GM10847 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF241PBX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF800QBA ENCSR034ZKE Signal bigWig Breast epithelium tissue female adult 53 years H3K27ac signal 2 900 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/6bcf617c-65cc-4b5f-b74d-7067e6689acc/ENCFF800QBA.bigWig\ color 181,145,0\ longLabel Breast epithelium tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR034ZKE Signal\ track wgEncodeReg4Epigenetics_ENCFF800QBA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF382VDL ENCSR842NDO - strand bigWig Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours - strand total R 2 900 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/dff2125e-239d-46a1-b796-981bf7af8c91/ENCFF382VDL.bigWig\ color 254,75,173\ longLabel Natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR842NDO - strand\ track wgEncodeReg4RnaSeq_ENCFF382VDL\ type bigWig\ visibility full\ encTfChipPkENCFF762MGC MCF-7 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in MCF-7 from ENCODE 3 (ENCFF762MGC) 0 900 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in MCF-7 from ENCODE 3 (ENCFF762MGC)\ parent encTfChipPk off\ shortLabel MCF-7 TAF1\ subGroups cellType=MCF-7 factor=TAF1\ track encTfChipPkENCFF762MGC\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_rev Tc:MdmToLps_01hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse 0 900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_rev Tc:MdmToLps_01hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse 1 900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor2%20%28t5%20Subject2%29.CNhs13383.12800-136G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor2 (t5 Subject2)_CNhs13383_12800-136G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12800-136G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor2T5Subject2_CNhs13383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12800-136G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF397PDR ENCSR000DYO Signal bigWig GM10847 POLR2A ENCSR000DYO signal 2 901 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b5fd1552-1dcd-45bd-9e80-6849514c4f7d/ENCFF397PDR.bigWig\ color 254,75,173\ longLabel GM10847 POLR2A ENCSR000DYO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYO Signal\ track wgEncodeReg4TfChip_ENCFF397PDR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF746VWS ENCSR035QHH Peak bigBed 5 Placenta tissue female embryo 113 days DNase peak 4 901 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/7532c6a4-1107-4d4a-8e3e-76d53ff1c728/ENCFF746VWS.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR035QHH Peak\ track wgEncodeReg4Epigenetics_ENCFF746VWS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF203UBD ENCSR844SCP + strand bigWig Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours + strand total RNA-seq signal 2 901 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/31c4eb6b-5180-447b-afed-cbc2a76f4170/ENCFF203UBD.bigWig\ color 254,75,173\ longLabel Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR844SCP + strand\ track wgEncodeReg4RnaSeq_ENCFF203UBD\ type bigWig\ visibility full\ encTfChipPkENCFF452VLA MCF-7 TRIM22 narrowPeak Transcription Factor ChIP-seq Peaks of TRIM22 in MCF-7 from ENCODE 3 (ENCFF452VLA) 0 901 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of TRIM22 in MCF-7 from ENCODE 3 (ENCFF452VLA)\ parent encTfChipPk off\ shortLabel MCF-7 TRIM22\ subGroups cellType=MCF-7 factor=TRIM22\ track encTfChipPkENCFF452VLA\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_fwd Tc:MdmToLps_01hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward 0 901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_fwd Tc:MdmToLps_01hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward 1 901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF229VSP ENCSR000DYP Peak bigBed 5 GM12878 ZNF384 peaks 4 902 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/bb7c921e-1d85-423e-8f67-ba08b9904334/ENCFF229VSP.bigBed\ labelFields none\ longLabel GM12878 ZNF384 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF229VSP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF436GJG ENCSR035QHH Signal bigWig Placenta tissue female embryo 113 days DNase signal 2 902 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/345f1627-8600-4ac7-9468-b58b49544f74/ENCFF436GJG.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR035QHH Signal\ track wgEncodeReg4Epigenetics_ENCFF436GJG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF396NBJ ENCSR844SCP - strand bigWig Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours - strand total RNA-seq signal 2 902 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/cd5f0120-421c-40c8-9397-c36a3e26198f/ENCFF396NBJ.bigWig\ color 254,75,173\ longLabel Activated T-cell male adult (38 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR844SCP - strand\ track wgEncodeReg4RnaSeq_ENCFF396NBJ\ type bigWig\ visibility full\ encTfChipPkENCFF589MVU MCF-7 ZBTB1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB1 in MCF-7 from ENCODE 3 (ENCFF589MVU) 0 902 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB1 in MCF-7 from ENCODE 3 (ENCFF589MVU)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB1\ subGroups cellType=MCF-7 factor=ZBTB1\ track encTfChipPkENCFF589MVU\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_rev Tc:MdmToLps_01hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse 0 902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_rev Tc:MdmToLps_01hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse 1 902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor3%20%28t5%20Subject3%29.CNhs13178.12898-137H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor3 (t5 Subject3)_CNhs13178_12898-137H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12898-137H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor3T5Subject3_CNhs13178_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12898-137H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF862AYM ENCSR000DYP Signal bigWig GM12878 ZNF384 ENCSR000DYP signal 2 903 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/420d2548-88cb-43cf-81e1-95f34c5ad3b6/ENCFF862AYM.bigWig\ color 254,75,173\ longLabel GM12878 ZNF384 ENCSR000DYP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYP Signal\ track wgEncodeReg4TfChip_ENCFF862AYM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF343KHW ENCSR035RVH Peak bigBed 5 Foreskin keratinocyte male newborn DNase peak 4 903 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/f3371e3e-efc5-4798-b26e-3cd3e40ba263/ENCFF343KHW.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin keratinocyte male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR035RVH Peak\ track wgEncodeReg4Epigenetics_ENCFF343KHW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF720AKI ENCSR853BNH + strand bigWig Gastrocnemius medialis tissue male adult (37 years) + strand total RNA-seq signal 2 903 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/2f6ce2c3-462d-428e-8350-0a8ccc7a2b8c/ENCFF720AKI.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR853BNH + strand\ track wgEncodeReg4RnaSeq_ENCFF720AKI\ type bigWig\ visibility full\ encTfChipPkENCFF496RVC MCF-7 ZBTB11 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB11 in MCF-7 from ENCODE 3 (ENCFF496RVC) 0 903 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB11 in MCF-7 from ENCODE 3 (ENCFF496RVC)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB11\ subGroups cellType=MCF-7 factor=ZBTB11\ track encTfChipPkENCFF496RVC\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_fwd Tc:MdmToLps_01hr20minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward 0 903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_fwd Tc:MdmToLps_01hr20minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward 1 903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF760DZX ENCSR000DYQ Peak bigBed 5 GM12878 ESRRA peaks 4 904 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/bec531c0-0933-4fee-ba5e-b06a35f901df/ENCFF760DZX.bigBed\ labelFields none\ longLabel GM12878 ESRRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF760DZX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF910KFI ENCSR035RVH Signal bigWig Foreskin keratinocyte male newborn DNase signal 2 904 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/8d33e971-5d11-4cf3-b0fc-30ae5059cc7b/ENCFF910KFI.bigWig\ color 6,218,147\ longLabel Foreskin keratinocyte male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR035RVH Signal\ track wgEncodeReg4Epigenetics_ENCFF910KFI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF576AJP ENCSR853BNH - strand bigWig Gastrocnemius medialis tissue male adult (37 years) - strand total RNA-seq signal 2 904 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/8c5f5bd1-0e35-489d-b943-bc37db45688e/ENCFF576AJP.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR853BNH - strand\ track wgEncodeReg4RnaSeq_ENCFF576AJP\ type bigWig\ visibility full\ encTfChipPkENCFF780WLS MCF-7 ZBTB33 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in MCF-7 from ENCODE 3 (ENCFF780WLS) 0 904 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in MCF-7 from ENCODE 3 (ENCFF780WLS)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB33\ subGroups cellType=MCF-7 factor=ZBTB33\ track encTfChipPkENCFF780WLS\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_rev Tc:MdmToLps_01hr20minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse 0 904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_rev Tc:MdmToLps_01hr20minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse 1 904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor2%20%28t6%20Subject2%29.CNhs13384.12801-136G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor2 (t6 Subject2)_CNhs13384_12801-136G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12801-136G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor2T6Subject2_CNhs13384_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12801-136G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF091TIJ ENCSR000DYQ Signal bigWig GM12878 ESRRA ENCSR000DYQ signal 2 905 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7bacee3a-41f0-472c-9531-a8b81dbc6120/ENCFF091TIJ.bigWig\ color 254,75,173\ longLabel GM12878 ESRRA ENCSR000DYQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYQ Signal\ track wgEncodeReg4TfChip_ENCFF091TIJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF434AXT ENCSR035SZE Peak bigBed 5 T-helper 1 cell male adult 56 years DNase peak 4 905 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/1b71732c-9019-405c-9466-d9e8a86040ce/ENCFF434AXT.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell male adult 56 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR035SZE Peak\ track wgEncodeReg4Epigenetics_ENCFF434AXT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF756IDW ENCSR853TXT + strand bigWig Right cardiac atrium tissue male adult (60 years) + strand total RNA-seq signal 2 905 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/b6c8bd6b-e8f0-48b1-a5ec-b192af8e5630/ENCFF756IDW.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR853TXT + strand\ track wgEncodeReg4RnaSeq_ENCFF756IDW\ type bigWig\ visibility full\ encTfChipPkENCFF932XEU MCF-7 ZBTB40 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB40 in MCF-7 from ENCODE 3 (ENCFF932XEU) 0 905 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB40 in MCF-7 from ENCODE 3 (ENCFF932XEU)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB40\ subGroups cellType=MCF-7 factor=ZBTB40\ track encTfChipPkENCFF932XEU\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_fwd Tc:MdmToLps_01hr20minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward 0 905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_fwd Tc:MdmToLps_01hr20minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward 1 905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF064TOM ENCSR000DYR Peak bigBed 5 GM12878 CUX1 peaks 4 906 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8bc0e28d-00ff-4174-be63-6e89192c66f7/ENCFF064TOM.bigBed\ labelFields none\ longLabel GM12878 CUX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF064TOM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF863OLH ENCSR035SZE Signal bigWig T-helper 1 cell male adult 56 years DNase signal 2 906 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ac70f74e-feb4-4799-8007-b974b2be5f95/ENCFF863OLH.bigWig\ color 6,218,147\ longLabel T-helper 1 cell male adult 56 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR035SZE Signal\ track wgEncodeReg4Epigenetics_ENCFF863OLH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF721LQD ENCSR853TXT - strand bigWig Right cardiac atrium tissue male adult (60 years) - strand total RNA-seq signal 2 906 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/073e46b1-8838-4780-ab74-74241ce243bb/ENCFF721LQD.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR853TXT - strand\ track wgEncodeReg4RnaSeq_ENCFF721LQD\ type bigWig\ visibility full\ encTfChipPkENCFF794UEM MCF-7 ZBTB7B narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB7B in MCF-7 from ENCODE 3 (ENCFF794UEM) 0 906 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZBTB7B in MCF-7 from ENCODE 3 (ENCFF794UEM)\ parent encTfChipPk off\ shortLabel MCF-7 ZBTB7B\ subGroups cellType=MCF-7 factor=ZBTB7B\ track encTfChipPkENCFF794UEM\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_rev Tc:MdmToLps_01hr20minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse 0 906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_rev Tc:MdmToLps_01hr20minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse 1 906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor3%20%28t6%20Subject3%29.CNhs13179.12899-137I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor3 (t6 Subject3)_CNhs13179_12899-137I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12899-137I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor3T6Subject3_CNhs13179_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12899-137I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF745BDD ENCSR000DYR Signal bigWig GM12878 CUX1 ENCSR000DYR signal 2 907 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5f81b65a-a6e6-43e1-8cb1-182120aeb8c4/ENCFF745BDD.bigWig\ color 254,75,173\ longLabel GM12878 CUX1 ENCSR000DYR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYR Signal\ track wgEncodeReg4TfChip_ENCFF745BDD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF589ZDX ENCSR036DBU Peak bigBed 5 Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 907 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/4ffbd440-ca93-46d0-90bd-52b2cef086fb/ENCFF589ZDX.bigBed\ color 255,0,0\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR036DBU Peak\ track wgEncodeReg4Epigenetics_ENCFF589ZDX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF818TKM ENCSR853WOM + strand bigWig Stomach tissue female adult (51 years) + strand total RNA-seq signal 2 907 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/c5d5faef-4541-4b25-8002-40a469e1122d/ENCFF818TKM.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (51 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR853WOM + strand\ track wgEncodeReg4RnaSeq_ENCFF818TKM\ type bigWig\ visibility full\ encTfChipPkENCFF775BWJ MCF-7 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in MCF-7 from ENCODE 3 (ENCFF775BWJ) 0 907 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZFX in MCF-7 from ENCODE 3 (ENCFF775BWJ)\ parent encTfChipPk off\ shortLabel MCF-7 ZFX\ subGroups cellType=MCF-7 factor=ZFX\ track encTfChipPkENCFF775BWJ\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_fwd Tc:MdmToLps_02hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward 0 907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_fwd Tc:MdmToLps_02hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward 1 907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF086GAB ENCSR000DYS Peak bigBed 5 GM12878 JUND peaks 4 908 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8b9bde98-6c1c-4bfe-9f55-3711c815c284/ENCFF086GAB.bigBed\ labelFields none\ longLabel GM12878 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF086GAB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF483GED ENCSR036DBU Signal bigWig Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 908 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/ea4a6945-0d46-41ae-879b-fb739404221f/ENCFF483GED.bigWig\ color 255,0,0\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR036DBU Signal\ track wgEncodeReg4Epigenetics_ENCFF483GED\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF368BUM ENCSR853WOM - strand bigWig Stomach tissue female adult (51 years) - strand total RNA-seq signal 2 908 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/01987df4-7467-4747-b0ab-779590045c6f/ENCFF368BUM.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (51 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR853WOM - strand\ track wgEncodeReg4RnaSeq_ENCFF368BUM\ type bigWig\ visibility full\ encTfChipPkENCFF694ZRC MCF-7 ZHX2 narrowPeak Transcription Factor ChIP-seq Peaks of ZHX2 in MCF-7 from ENCODE 3 (ENCFF694ZRC) 0 908 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZHX2 in MCF-7 from ENCODE 3 (ENCFF694ZRC)\ parent encTfChipPk off\ shortLabel MCF-7 ZHX2\ subGroups cellType=MCF-7 factor=ZHX2\ track encTfChipPkENCFF694ZRC\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_rev Tc:MdmToLps_02hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse 0 908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_rev Tc:MdmToLps_02hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse 1 908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor2%20%28t8%20Subject2%29.CNhs13386.12803-136G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor2 (t8 Subject2)_CNhs13386_12803-136G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12803-136G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor2T8Subject2_CNhs13386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12803-136G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF527HKA ENCSR000DYS Signal bigWig GM12878 JUND ENCSR000DYS signal 2 909 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/3435da7f-cfc1-4042-8594-38050d9082bd/ENCFF527HKA.bigWig\ color 254,75,173\ longLabel GM12878 JUND ENCSR000DYS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYS Signal\ track wgEncodeReg4TfChip_ENCFF527HKA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF828LGP ENCSR036HAT Peak bigBed 5 Spinal cord tissue female embryo 113 days H3K4me3 peak 4 909 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/966ebd65-4b80-4458-9a89-85d694684961/ENCFF828LGP.bigBed\ color 255,0,0\ longLabel Spinal cord tissue female embryo 113 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR036HAT Peak\ track wgEncodeReg4Epigenetics_ENCFF828LGP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF097IIL ENCSR854VRX + strand bigWig Heart right ventricle tissue male adult (43 years) + strand total RNA-seq signal 2 909 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/c24b9862-0b0c-4524-9459-3d2a14dfbe04/ENCFF097IIL.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (43 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR854VRX + strand\ track wgEncodeReg4RnaSeq_ENCFF097IIL\ type bigWig\ visibility full\ encTfChipPkENCFF687REM MCF-7 ZKSCAN1 narrowPeak Transcription Factor ChIP-seq Peaks of ZKSCAN1 in MCF-7 from ENCODE 3 (ENCFF687REM) 0 909 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZKSCAN1 in MCF-7 from ENCODE 3 (ENCFF687REM)\ parent encTfChipPk off\ shortLabel MCF-7 ZKSCAN1\ subGroups cellType=MCF-7 factor=ZKSCAN1\ track encTfChipPkENCFF687REM\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_fwd Tc:MdmToLps_02hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward 0 909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_fwd Tc:MdmToLps_02hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward 1 909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF670DYX ENCSR000DYT Peak bigBed 5 GM12878 SREBF2 peaks 4 910 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/6dff86b3-ddd5-479f-905d-ae4d0f4d4c24/ENCFF670DYX.bigBed\ labelFields none\ longLabel GM12878 SREBF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF670DYX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF569FQL ENCSR036HAT Signal bigWig Spinal cord tissue female embryo 113 days H3K4me3 signal 2 910 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/09c5c70c-6e2a-4f4f-9254-31dc3c4081f1/ENCFF569FQL.bigWig\ color 255,0,0\ longLabel Spinal cord tissue female embryo 113 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR036HAT Signal\ track wgEncodeReg4Epigenetics_ENCFF569FQL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF594WAI ENCSR854VRX - strand bigWig Heart right ventricle tissue male adult (43 years) - strand total RNA-seq signal 2 910 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/dc5ab89d-0371-436f-921d-f92676b5c518/ENCFF594WAI.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (43 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR854VRX - strand\ track wgEncodeReg4RnaSeq_ENCFF594WAI\ type bigWig\ visibility full\ encTfChipPkENCFF621ZSK MCF-7 ZNF207 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF207 in MCF-7 from ENCODE 3 (ENCFF621ZSK) 0 910 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF207 in MCF-7 from ENCODE 3 (ENCFF621ZSK)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF207\ subGroups cellType=MCF-7 factor=ZNF207\ track encTfChipPkENCFF621ZSK\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_rev Tc:MdmToLps_02hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse 0 910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_rev Tc:MdmToLps_02hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse 1 910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor3%20%28t8%20Subject3%29.CNhs13181.12901-137I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor3 (t8 Subject3)_CNhs13181_12901-137I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12901-137I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor3T8Subject3_CNhs13181_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12901-137I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF619LTN ENCSR000DYT Signal bigWig GM12878 SREBF2 ENCSR000DYT signal 2 911 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b3e31c47-0e44-4ca1-b6d2-084e7c7901b1/ENCFF619LTN.bigWig\ color 254,75,173\ longLabel GM12878 SREBF2 ENCSR000DYT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYT Signal\ track wgEncodeReg4TfChip_ENCFF619LTN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477ILF ENCSR036VRV Peak bigBed 5 Right kidney tissue female embryo 107 days DNase peak 4 911 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/2fbd2268-1dae-4d50-a37d-a77b37f68589/ENCFF477ILF.bigBed\ color 6,218,147\ labelFields none\ longLabel Right kidney tissue female embryo 107 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR036VRV Peak\ track wgEncodeReg4Epigenetics_ENCFF477ILF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF918QTH ENCSR856VAD + strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 911 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/b3751f02-9447-4697-ae44-8dd40205dcfa/ENCFF918QTH.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR856VAD + strand\ track wgEncodeReg4RnaSeq_ENCFF918QTH\ type bigWig\ visibility full\ encTfChipPkENCFF620RPM MCF-7 ZNF217 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF620RPM) 0 911 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF620RPM)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF217 1\ subGroups cellType=MCF-7 factor=ZNF217\ track encTfChipPkENCFF620RPM\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_fwd Tc:MdmToLps_02hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward 0 911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_fwd Tc:MdmToLps_02hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward 1 911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF321ERB ENCSR000DYU Peak bigBed 5 GM12878 SREBF1 peaks 4 912 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/c2bfc9ec-c110-401b-a092-cce75e948040/ENCFF321ERB.bigBed\ labelFields none\ longLabel GM12878 SREBF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF321ERB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF190UQR ENCSR036VRV Signal bigWig Right kidney tissue female embryo 107 days DNase signal 2 912 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/f5ce4e52-6f2f-4e99-a839-e65edddc263f/ENCFF190UQR.bigWig\ color 6,218,147\ longLabel Right kidney tissue female embryo 107 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR036VRV Signal\ track wgEncodeReg4Epigenetics_ENCFF190UQR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF729LGG ENCSR856VAD - strand bigWig Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 912 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/bd06930b-8e46-409f-b545-0a62a5c275b1/ENCFF729LGG.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR856VAD - strand\ track wgEncodeReg4RnaSeq_ENCFF729LGG\ type bigWig\ visibility full\ encTfChipPkENCFF246ZMG MCF-7 ZNF217 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF246ZMG) 0 912 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF217 in MCF-7 from ENCODE 3 (ENCFF246ZMG)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF217 2\ subGroups cellType=MCF-7 factor=ZNF217\ track encTfChipPkENCFF246ZMG\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_rev Tc:MdmToLps_02hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse 0 912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_rev Tc:MdmToLps_02hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse 1 912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor1%20%28t9%20Subject1%29.CNhs13152.12706-135E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor1 (t9 Subject1)_CNhs13152_12706-135E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12706-135E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor1T9Subject1_CNhs13152_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12706-135E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF104OMJ ENCSR000DYU Signal bigWig GM12878 SREBF1 ENCSR000DYU signal 2 913 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/add5da2a-162d-451d-88ee-a11f17abdd5d/ENCFF104OMJ.bigWig\ color 254,75,173\ longLabel GM12878 SREBF1 ENCSR000DYU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYU Signal\ track wgEncodeReg4TfChip_ENCFF104OMJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF443VWX ENCSR037GFN Peak bigBed 5 Gastroesophageal sphincter tissue male adult 37 years H3K4me3 peak 4 913 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/9b0fbeab-a2fd-4ad1-9611-dbcc642515b4/ENCFF443VWX.bigBed\ color 255,0,0\ longLabel Gastroesophageal sphincter tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR037GFN Peak\ track wgEncodeReg4Epigenetics_ENCFF443VWX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF593EJA ENCSR857WJK + strand bigWig Sigmoid colon tissue male adult (37 years) + strand total RNA-seq signal 2 913 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/f67cbddf-902a-4977-a709-329056daf5fb/ENCFF593EJA.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR857WJK + strand\ track wgEncodeReg4RnaSeq_ENCFF593EJA\ type bigWig\ visibility full\ encTfChipPkENCFF619BFO MCF-7 ZNF24 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF24 in MCF-7 from ENCODE 3 (ENCFF619BFO) 0 913 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF24 in MCF-7 from ENCODE 3 (ENCFF619BFO)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF24\ subGroups cellType=MCF-7 factor=ZNF24\ track encTfChipPkENCFF619BFO\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_fwd Tc:MdmToLps_02hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward 0 913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_fwd Tc:MdmToLps_02hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward 1 913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF605LFT ENCSR000DYV Peak bigBed 5 GM12878 MAFK peaks 4 914 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/d402016e-7833-4a2d-be19-c95927be3ca2/ENCFF605LFT.bigBed\ labelFields none\ longLabel GM12878 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF605LFT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF512IEA ENCSR037GFN Signal bigWig Gastroesophageal sphincter tissue male adult 37 years H3K4me3 signal 2 914 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/5f2bf1d0-6056-48d1-a2ec-925b7f05cc5b/ENCFF512IEA.bigWig\ color 255,0,0\ longLabel Gastroesophageal sphincter tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR037GFN Signal\ track wgEncodeReg4Epigenetics_ENCFF512IEA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF833RVA ENCSR857WJK - strand bigWig Sigmoid colon tissue male adult (37 years) - strand total RNA-seq signal 2 914 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b376e036-f718-4e8e-99cd-b1691df2f96b/ENCFF833RVA.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR857WJK - strand\ track wgEncodeReg4RnaSeq_ENCFF833RVA\ type bigWig\ visibility full\ encTfChipPkENCFF786XJV MCF-7 ZNF444 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF444 in MCF-7 from ENCODE 3 (ENCFF786XJV) 0 914 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF444 in MCF-7 from ENCODE 3 (ENCFF786XJV)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF444\ subGroups cellType=MCF-7 factor=ZNF444\ track encTfChipPkENCFF786XJV\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_rev Tc:MdmToLps_02hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse 0 914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_rev Tc:MdmToLps_02hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse 1 914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor2%20%28t9%20Subject2%29.CNhs13387.12804-136G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor2 (t9 Subject2)_CNhs13387_12804-136G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12804-136G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor2T9Subject2_CNhs13387_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12804-136G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF949YIL ENCSR000DYV Signal bigWig GM12878 MAFK ENCSR000DYV signal 2 915 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/ccc45629-c6a3-461d-94e8-8d824b8826f4/ENCFF949YIL.bigWig\ color 254,75,173\ longLabel GM12878 MAFK ENCSR000DYV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYV Signal\ track wgEncodeReg4TfChip_ENCFF949YIL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF034PJC ENCSR037GKL Signal bigWig Stomach tissue male adult 54 years CTCF signal 2 915 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/f91b3334-138e-4379-9eca-aa00932a28a7/ENCFF034PJC.bigWig\ color 0,176,240\ longLabel Stomach tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR037GKL Signal\ track wgEncodeReg4Epigenetics_ENCFF034PJC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF108RDF ENCSR858QEL + strand bigWig Tibial nerve tissue female adult (53 years) + strand total RNA-seq signal 2 915 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/b2ab6f77-3efb-4abb-9df4-ceddb9f04029/ENCFF108RDF.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR858QEL + strand\ track wgEncodeReg4RnaSeq_ENCFF108RDF\ type bigWig\ visibility full\ encTfChipPkENCFF675SAG MCF-7 ZNF507 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF507 in MCF-7 from ENCODE 3 (ENCFF675SAG) 0 915 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF507 in MCF-7 from ENCODE 3 (ENCFF675SAG)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF507\ subGroups cellType=MCF-7 factor=ZNF507\ track encTfChipPkENCFF675SAG\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_fwd Tc:MdmToLps_02hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward 0 915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_fwd Tc:MdmToLps_02hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward 1 915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF238GUI ENCSR000DYX Peak bigBed 5 GM12878 SIN3A peaks 4 916 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/95328f44-6aba-427f-aef0-01f1b1723dba/ENCFF238GUI.bigBed\ labelFields none\ longLabel GM12878 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF238GUI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF459KMA ENCSR037PGI Peak bigBed 5 RCC 7860 DNase peak 4 916 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/40f12454-4323-40c5-8c16-16dc482aca36/ENCFF459KMA.bigBed\ color 6,218,147\ labelFields none\ longLabel RCC 7860 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR037PGI Peak\ track wgEncodeReg4Epigenetics_ENCFF459KMA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF051QNJ ENCSR858QEL - strand bigWig Tibial nerve tissue female adult (53 years) - strand total RNA-seq signal 2 916 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/e669ec2c-2183-4133-bb97-4ea37b34b5bd/ENCFF051QNJ.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR858QEL - strand\ track wgEncodeReg4RnaSeq_ENCFF051QNJ\ type bigWig\ visibility full\ encTfChipPkENCFF209TEF MCF-7 ZNF512B 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF209TEF) 0 916 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF209TEF)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF512B 1\ subGroups cellType=MCF-7 factor=ZNF512B\ track encTfChipPkENCFF209TEF\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_rev Tc:MdmToLps_02hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse 0 916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_rev Tc:MdmToLps_02hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse 1 916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr30min%2c%20donor3%20%28t9%20Subject3%29.CNhs13182.12902-137I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr30min, donor3 (t9 Subject3)_CNhs13182_12902-137I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12902-137I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr30minDonor3T9Subject3_CNhs13182_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12902-137I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF858OPR ENCSR000DYX Signal bigWig GM12878 SIN3A ENCSR000DYX signal 2 917 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/244750b7-bd1b-497e-9bbb-f75647f5733c/ENCFF858OPR.bigWig\ color 254,75,173\ longLabel GM12878 SIN3A ENCSR000DYX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYX Signal\ track wgEncodeReg4TfChip_ENCFF858OPR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF452YZP ENCSR037PGI Signal bigWig RCC 7860 DNase signal 2 917 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/a9d2592a-28fe-4d7d-bc9f-0a2041854fe6/ENCFF452YZP.bigWig\ color 6,218,147\ longLabel RCC 7860 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR037PGI Signal\ track wgEncodeReg4Epigenetics_ENCFF452YZP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF726WTR ENCSR862RGX + strand bigWig Suprapubic skin tissue male adult (37 years) + strand total RNA-seq signal 2 917 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/eb811f30-e7ae-4e12-ba40-624ec033f02d/ENCFF726WTR.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (37 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR862RGX + strand\ track wgEncodeReg4RnaSeq_ENCFF726WTR\ type bigWig\ visibility full\ encTfChipPkENCFF414EYO MCF-7 ZNF512B 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF414EYO) 0 917 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF512B in MCF-7 from ENCODE 3 (ENCFF414EYO)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF512B 2\ subGroups cellType=MCF-7 factor=ZNF512B\ track encTfChipPkENCFF414EYO\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_fwd Tc:MdmToLps_03hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward 0 917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_fwd Tc:MdmToLps_03hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward 1 917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF509WLQ ENCSR000DYY Peak bigBed 5 GM12878 E2F4 peaks 4 918 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/00e0fef5-13d4-4763-889f-ad499e4b7ae0/ENCFF509WLQ.bigBed\ labelFields none\ longLabel GM12878 E2F4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF509WLQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF278VHG ENCSR037PIU Peak bigBed 5 Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue male adult 80 years DNase peak 4 918 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/4ca07c0f-a66b-48a7-ae62-d7ffc7d675ff/ENCFF278VHG.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue male adult 80 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR037PIU Peak\ track wgEncodeReg4Epigenetics_ENCFF278VHG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF352FNR ENCSR862RGX - strand bigWig Suprapubic skin tissue male adult (37 years) - strand total RNA-seq signal 2 918 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/da48a973-26c6-4dbc-8042-00bc793b8681/ENCFF352FNR.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (37 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR862RGX - strand\ track wgEncodeReg4RnaSeq_ENCFF352FNR\ type bigWig\ visibility full\ encTfChipPkENCFF290LSS MCF-7 ZNF574 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF574 in MCF-7 from ENCODE 3 (ENCFF290LSS) 0 918 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF574 in MCF-7 from ENCODE 3 (ENCFF290LSS)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF574\ subGroups cellType=MCF-7 factor=ZNF574\ track encTfChipPkENCFF290LSS\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_rev Tc:MdmToLps_03hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse 0 918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_rev Tc:MdmToLps_03hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse 1 918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor1%20%28t10%20Subject1%29.CNhs12924.12707-135E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor1 (t10 Subject1)_CNhs12924_12707-135E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12707-135E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor1T10Subject1_CNhs12924_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12707-135E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF482TVC ENCSR000DYY Signal bigWig GM12878 E2F4 ENCSR000DYY signal 2 919 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/8bd8e6f2-b7e8-4304-a557-9eb658733757/ENCFF482TVC.bigWig\ color 254,75,173\ longLabel GM12878 E2F4 ENCSR000DYY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYY Signal\ track wgEncodeReg4TfChip_ENCFF482TVC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF437SND ENCSR037PIU Signal bigWig Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue male adult 80 years DNase signal 2 919 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/81e39442-6ea3-4f9d-bb91-2d028933ceef/ENCFF437SND.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue male adult 80 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR037PIU Signal\ track wgEncodeReg4Epigenetics_ENCFF437SND\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF218IYR ENCSR863EIY + strand bigWig Dorsolateral prefrontal cortex tissue male adult (82 years) + strand total RNA-seq signal 2 919 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/f2b18f69-2526-4aa8-93d8-5ba7f13c96cc/ENCFF218IYR.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (82 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR863EIY + strand\ track wgEncodeReg4RnaSeq_ENCFF218IYR\ type bigWig\ visibility full\ encTfChipPkENCFF306PBX MCF-7 ZNF579 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF579 in MCF-7 from ENCODE 3 (ENCFF306PBX) 0 919 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF579 in MCF-7 from ENCODE 3 (ENCFF306PBX)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF579\ subGroups cellType=MCF-7 factor=ZNF579\ track encTfChipPkENCFF306PBX\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_fwd Tc:MdmToLps_03hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward 0 919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_fwd Tc:MdmToLps_03hr00minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward 1 919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF409FTM ENCSR000DYZ Peak bigBed 5 GM12878 TBL1XR1 peaks 4 920 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/921e8ed5-67e5-43a8-b561-ee70d9336645/ENCFF409FTM.bigBed\ labelFields none\ longLabel GM12878 TBL1XR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF409FTM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF370ILR ENCSR038FOS Peak bigBed 5 Suprapubic skin tissue male adult 54 years CTCF peak 4 920 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/38e4e757-6db4-4414-8c41-3a358f6a0d2d/ENCFF370ILR.bigBed\ color 0,176,240\ labelFields none\ longLabel Suprapubic skin tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038FOS Peak\ track wgEncodeReg4Epigenetics_ENCFF370ILR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF520BGD ENCSR863EIY - strand bigWig Dorsolateral prefrontal cortex tissue male adult (82 years) - strand total RNA-seq signal 2 920 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/6ba32687-c4bc-454b-a979-e74b0639ece6/ENCFF520BGD.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (82 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR863EIY - strand\ track wgEncodeReg4RnaSeq_ENCFF520BGD\ type bigWig\ visibility full\ encTfChipPkENCFF720PZA MCF-7 ZNF592 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF720PZA) 0 920 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF720PZA)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF592 1\ subGroups cellType=MCF-7 factor=ZNF592\ track encTfChipPkENCFF720PZA\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_rev Tc:MdmToLps_03hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse 0 920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_rev Tc:MdmToLps_03hr00minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse 1 920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor2%20%28t10%20Subject2%29.CNhs13388.12805-136G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor2 (t10 Subject2)_CNhs13388_12805-136G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12805-136G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor2T10Subject2_CNhs13388_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12805-136G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF964GST ENCSR000DYZ Signal bigWig GM12878 TBL1XR1 ENCSR000DYZ signal 2 921 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/ae819e23-94c7-4047-a4fc-b20ebb8b9fa3/ENCFF964GST.bigWig\ color 254,75,173\ longLabel GM12878 TBL1XR1 ENCSR000DYZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DYZ Signal\ track wgEncodeReg4TfChip_ENCFF964GST\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF848HOS ENCSR038FOS Signal bigWig Suprapubic skin tissue male adult 54 years CTCF signal 2 921 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/46030d74-931c-4ead-b8b2-27affd73abe0/ENCFF848HOS.bigWig\ color 0,176,240\ longLabel Suprapubic skin tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038FOS Signal\ track wgEncodeReg4Epigenetics_ENCFF848HOS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF193HXZ ENCSR863VFU + strand bigWig Dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal 2 921 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/acbc3b0a-9fe5-4fb1-bbdf-65ebc0293739/ENCFF193HXZ.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (88 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR863VFU + strand\ track wgEncodeReg4RnaSeq_ENCFF193HXZ\ type bigWig\ visibility full\ encTfChipPkENCFF541HRT MCF-7 ZNF592 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF541HRT) 0 921 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF592 in MCF-7 from ENCODE 3 (ENCFF541HRT)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF592 2\ subGroups cellType=MCF-7 factor=ZNF592\ track encTfChipPkENCFF541HRT\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_fwd Tc:MdmToLps_03hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward 0 921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_fwd Tc:MdmToLps_03hr00minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward 1 921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF404CEP ENCSR000DZA Peak bigBed 5 GM12878 MAZ peaks 4 922 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/a188b847-a2e6-4377-a6cc-7795b104116e/ENCFF404CEP.bigBed\ labelFields none\ longLabel GM12878 MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF404CEP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF830ELX ENCSR038NSJ Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years H3K4me3 peak 4 922 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/85f33145-a7fd-4ba4-a947-8bba51205a65/ENCFF830ELX.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038NSJ Peak\ track wgEncodeReg4Epigenetics_ENCFF830ELX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF604SPP ENCSR863VFU - strand bigWig Dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal 2 922 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/440f56f1-7ba3-4228-809f-7e03de95a46d/ENCFF604SPP.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (88 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR863VFU - strand\ track wgEncodeReg4RnaSeq_ENCFF604SPP\ type bigWig\ visibility full\ encTfChipPkENCFF329QYZ MCF-7 ZNF687 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF687 in MCF-7 from ENCODE 3 (ENCFF329QYZ) 0 922 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF687 in MCF-7 from ENCODE 3 (ENCFF329QYZ)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF687\ subGroups cellType=MCF-7 factor=ZNF687\ track encTfChipPkENCFF329QYZ\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_rev Tc:MdmToLps_03hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse 0 922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_rev Tc:MdmToLps_03hr00minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse 1 922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr00min%2c%20donor3%20%28t10%20Subject3%29.CNhs13183.12903-137I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr00min, donor3 (t10 Subject3)_CNhs13183_12903-137I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12903-137I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr00minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr00minDonor3T10Subject3_CNhs13183_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12903-137I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF420YPZ ENCSR000DZA Signal bigWig GM12878 MAZ ENCSR000DZA signal 2 923 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/1c87bbe3-3345-4544-9292-3ff1e6c935d8/ENCFF420YPZ.bigWig\ color 254,75,173\ longLabel GM12878 MAZ ENCSR000DZA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZA Signal\ track wgEncodeReg4TfChip_ENCFF420YPZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF689AWS ENCSR038NSJ Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years H3K4me3 signal 2 923 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/e979bd4f-eade-4ab8-ac2a-f22ba3f47629/ENCFF689AWS.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038NSJ Signal\ track wgEncodeReg4Epigenetics_ENCFF689AWS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF858QRQ ENCSR867WQC + strand bigWig Right cardiac atrium tissue male adult (40 years) + strand total RNA-seq signal 2 923 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/1d6f226d-969e-4516-a0ab-fc0488561356/ENCFF858QRQ.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue male adult (40 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR867WQC + strand\ track wgEncodeReg4RnaSeq_ENCFF858QRQ\ type bigWig\ visibility full\ encTfChipPkENCFF525RRP MCF-7 ZNF8 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF8 in MCF-7 from ENCODE 3 (ENCFF525RRP) 0 923 190 85 255 222 170 255 0 0 0 regulation 1 color 190,85,255\ longLabel Transcription Factor ChIP-seq Peaks of ZNF8 in MCF-7 from ENCODE 3 (ENCFF525RRP)\ parent encTfChipPk off\ shortLabel MCF-7 ZNF8\ subGroups cellType=MCF-7 factor=ZNF8\ track encTfChipPkENCFF525RRP\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_ctss_fwd Tc:MdmToLps_03hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_forward 0 923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor2%20%28t11%20Subject2%29.CNhs13389.12806-136G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12806-136G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_tpm_fwd Tc:MdmToLps_03hr30minD2+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_forward 1 923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor2%20%28t11%20Subject2%29.CNhs13389.12806-136G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12806-136G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF807NFQ ENCSR000DZB Peak bigBed 5 GM12878 ELK1 peaks 4 924 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/6aa5b039-46f8-4c3b-9979-5fefdd76ba39/ENCFF807NFQ.bigBed\ labelFields none\ longLabel GM12878 ELK1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF807NFQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF478SWS ENCSR038VWU Peak bigBed 5 Mucosa of descending colon tissue male adult 40 years CTCF peak 4 924 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/08c3c427-8c9f-4773-b7ac-0ed4a56502bf/ENCFF478SWS.bigBed\ color 0,176,240\ labelFields none\ longLabel Mucosa of descending colon tissue male adult 40 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038VWU Peak\ track wgEncodeReg4Epigenetics_ENCFF478SWS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF256GON ENCSR867WQC - strand bigWig Right cardiac atrium tissue male adult (40 years) - strand total RNA-seq signal 2 924 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/0c30afc3-e066-4017-a78f-720fcee0afa6/ENCFF256GON.bigWig\ color 116,50,165\ longLabel Right cardiac atrium tissue male adult (40 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR867WQC - strand\ track wgEncodeReg4RnaSeq_ENCFF256GON\ type bigWig\ visibility full\ encTfChipPkENCFF436WHK MCF_10A FOS 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF436WHK) 0 924 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF436WHK)\ parent encTfChipPk off\ shortLabel MCF_10A FOS 1\ subGroups cellType=MCF_10A factor=FOS\ track encTfChipPkENCFF436WHK\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_ctss_rev Tc:MdmToLps_03hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse 0 924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor2%20%28t11%20Subject2%29.CNhs13389.12806-136G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12806-136G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_tpm_rev Tc:MdmToLps_03hr30minD2- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse 1 924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor2%20%28t11%20Subject2%29.CNhs13389.12806-136G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor2 (t11 Subject2)_CNhs13389_12806-136G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12806-136G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor2T11Subject2_CNhs13389_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12806-136G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF746TCL ENCSR000DZB Signal bigWig GM12878 ELK1 ENCSR000DZB signal 2 925 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/6a646974-6c82-487b-a3e0-4fab91aa6826/ENCFF746TCL.bigWig\ color 254,75,173\ longLabel GM12878 ELK1 ENCSR000DZB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZB Signal\ track wgEncodeReg4TfChip_ENCFF746TCL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF890UWL ENCSR038VWU Signal bigWig Mucosa of descending colon tissue male adult 40 years CTCF signal 2 925 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/96bab26f-e645-47ca-948a-f5b42f951588/ENCFF890UWL.bigWig\ color 0,176,240\ longLabel Mucosa of descending colon tissue male adult 40 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038VWU Signal\ track wgEncodeReg4Epigenetics_ENCFF890UWL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF055NIC ENCSR870IUI + strand bigWig Psoas muscle tissue female child (16 years) + strand total RNA-seq signal 2 925 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/e5120868-ee61-4c7a-8260-17fe4aca0fe0/ENCFF055NIC.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female child (16 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR870IUI + strand\ track wgEncodeReg4RnaSeq_ENCFF055NIC\ type bigWig\ visibility full\ encTfChipPkENCFF353OBA MCF_10A FOS 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF353OBA) 0 925 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF353OBA)\ parent encTfChipPk off\ shortLabel MCF_10A FOS 2\ subGroups cellType=MCF_10A factor=FOS\ track encTfChipPkENCFF353OBA\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_ctss_fwd Tc:MdmToLps_03hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_forward 0 925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor3%20%28t11%20Subject3%29.CNhs13184.12904-137I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12904-137I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_tpm_fwd Tc:MdmToLps_03hr30minD3+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_forward 1 925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor3%20%28t11%20Subject3%29.CNhs13184.12904-137I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12904-137I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF982CRX ENCSR000DZC Peak bigBed 5 GM12878 RCOR1 peaks 4 926 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/1a78a4cf-5d44-45c5-ab16-4eaf2edc00c3/ENCFF982CRX.bigBed\ labelFields none\ longLabel GM12878 RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF982CRX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF981ZEG ENCSR038WVV Peak bigBed 5 HG02973 ATAC peak 4 926 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/377d0140-8deb-48d9-8681-ccfb1014b480/ENCFF981ZEG.bigBed\ color 2,199,185\ longLabel HG02973 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038WVV Peak\ track wgEncodeReg4Epigenetics_ENCFF981ZEG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF289LEV ENCSR870IUI - strand bigWig Psoas muscle tissue female child (16 years) - strand total RNA-seq signal 2 926 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/6131fe2f-9017-4d5b-8d93-ea257107ca65/ENCFF289LEV.bigWig\ color 137,135,170\ longLabel Psoas muscle tissue female child (16 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR870IUI - strand\ track wgEncodeReg4RnaSeq_ENCFF289LEV\ type bigWig\ visibility full\ encTfChipPkENCFF222ZHH MCF_10A FOS 3 narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF222ZHH) 0 926 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF222ZHH)\ parent encTfChipPk off\ shortLabel MCF_10A FOS 3\ subGroups cellType=MCF_10A factor=FOS\ track encTfChipPkENCFF222ZHH\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_ctss_rev Tc:MdmToLps_03hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse 0 926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor3%20%28t11%20Subject3%29.CNhs13184.12904-137I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12904-137I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_tpm_rev Tc:MdmToLps_03hr30minD3- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse 1 926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor3%20%28t11%20Subject3%29.CNhs13184.12904-137I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor3 (t11 Subject3)_CNhs13184_12904-137I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12904-137I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor3T11Subject3_CNhs13184_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12904-137I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF972XNQ ENCSR000DZC Signal bigWig GM12878 RCOR1 ENCSR000DZC signal 2 927 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/f3971f34-82b3-42f1-96db-1174d5258db9/ENCFF972XNQ.bigWig\ color 254,75,173\ longLabel GM12878 RCOR1 ENCSR000DZC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZC Signal\ track wgEncodeReg4TfChip_ENCFF972XNQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF518WFH ENCSR038WVV Signal bigWig HG02973 ATAC signal 2 927 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/b576dd48-460c-4940-8f3e-33f4a31f308d/ENCFF518WFH.bigWig\ color 2,199,185\ longLabel HG02973 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038WVV Signal\ track wgEncodeReg4Epigenetics_ENCFF518WFH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF701JUX ENCSR875MVZ + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 927 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/02130ee1-2ae7-44e8-b9a7-037c7f5edfb2/ENCFF701JUX.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR875MVZ + strand\ track wgEncodeReg4RnaSeq_ENCFF701JUX\ type bigWig\ visibility full\ encTfChipPkENCFF558PJH MCF_10A FOS 4 narrowPeak Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF558PJH) 0 927 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in MCF_10A from ENCODE 3 (ENCFF558PJH)\ parent encTfChipPk off\ shortLabel MCF_10A FOS 4\ subGroups cellType=MCF_10A factor=FOS\ track encTfChipPkENCFF558PJH\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_fwd Tc:MdmToLps_04hrD2+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward 0 927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_fwd Tc:MdmToLps_04hrD2+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward 1 927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF242HCG ENCSR000DZD Peak bigBed 5 GM12878 EP300 peaks 4 928 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/d2594cab-e3bd-4d08-bc95-890197e362ce/ENCFF242HCG.bigBed\ labelFields none\ longLabel GM12878 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF242HCG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF981GXF ENCSR038XTK Peak bigBed 5 HCEC 1CT DNase peak 4 928 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/2ad127df-3af7-466b-83dc-d1ab24babced/ENCFF981GXF.bigBed\ color 6,218,147\ labelFields none\ longLabel HCEC 1CT DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038XTK Peak\ track wgEncodeReg4Epigenetics_ENCFF981GXF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF468UQS ENCSR875MVZ - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 928 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/fce32d21-6967-4a43-a8c3-7bac364b8df2/ENCFF468UQS.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR875MVZ - strand\ track wgEncodeReg4RnaSeq_ENCFF468UQS\ type bigWig\ visibility full\ encTfChipPkENCFF443CEL MCF_10A MYC narrowPeak Transcription Factor ChIP-seq Peaks of MYC in MCF_10A from ENCODE 3 (ENCFF443CEL) 0 928 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MYC in MCF_10A from ENCODE 3 (ENCFF443CEL)\ parent encTfChipPk off\ shortLabel MCF_10A MYC\ subGroups cellType=MCF_10A factor=MYC\ track encTfChipPkENCFF443CEL\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_rev Tc:MdmToLps_04hrD2- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse 0 928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_rev Tc:MdmToLps_04hrD2- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse 1 928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor2%20%28t12%20Subject2%29.CNhs13391.12807-136G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor2 (t12 Subject2)_CNhs13391_12807-136G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12807-136G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor2T12Subject2_CNhs13391_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12807-136G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF482JMC ENCSR000DZD Signal bigWig GM12878 EP300 ENCSR000DZD signal 2 929 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b907cdb5-2b8f-46c3-bd85-e8b02e0d8df9/ENCFF482JMC.bigWig\ color 254,75,173\ longLabel GM12878 EP300 ENCSR000DZD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZD Signal\ track wgEncodeReg4TfChip_ENCFF482JMC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF394WTE ENCSR038XTK Signal bigWig HCEC 1CT DNase signal 2 929 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/26f26bc5-4370-4b90-ae4a-daac29654b83/ENCFF394WTE.bigWig\ color 6,218,147\ longLabel HCEC 1CT DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR038XTK Signal\ track wgEncodeReg4Epigenetics_ENCFF394WTE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF571AFR ENCSR876TAN + strand bigWig Left ventricle myocardium superior tissue male adult (60 years) + strand total RNA-seq signal 2 929 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/0825d8f8-3a18-4f10-8c66-3f2e67717bea/ENCFF571AFR.bigWig\ color 116,50,165\ longLabel Left ventricle myocardium superior tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR876TAN + strand\ track wgEncodeReg4RnaSeq_ENCFF571AFR\ type bigWig\ visibility full\ encTfChipPkENCFF326DTU MCF_10A POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in MCF_10A from ENCODE 3 (ENCFF326DTU) 0 929 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in MCF_10A from ENCODE 3 (ENCFF326DTU)\ parent encTfChipPk off\ shortLabel MCF_10A POLR2A 1\ subGroups cellType=MCF_10A factor=POLR2A\ track encTfChipPkENCFF326DTU\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_fwd Tc:MdmToLps_04hrD3+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward 0 929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_fwd Tc:MdmToLps_04hrD3+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward 1 929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF566UBH ENCSR000DZE Peak bigBed 5 GM12878 CHD1 peaks 4 930 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/f4f44f24-d04c-4200-b54c-f07d0a26d3b2/ENCFF566UBH.bigBed\ labelFields none\ longLabel GM12878 CHD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF566UBH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF101AZH ENCSR039ZVQ Peak bigBed 5 Left renal cortex interstitium tissue male embryo 120 days DNase peak 4 930 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/5576f170-8899-4191-baf0-11a37393793e/ENCFF101AZH.bigBed\ color 6,218,147\ labelFields none\ longLabel Left renal cortex interstitium tissue male embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR039ZVQ Peak\ track wgEncodeReg4Epigenetics_ENCFF101AZH\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF282UYT ENCSR876TAN - strand bigWig Left ventricle myocardium superior tissue male adult (60 years) - strand total RNA-seq signal 2 930 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/8368369a-9b71-4c6a-a637-bb783811ac67/ENCFF282UYT.bigWig\ color 116,50,165\ longLabel Left ventricle myocardium superior tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR876TAN - strand\ track wgEncodeReg4RnaSeq_ENCFF282UYT\ type bigWig\ visibility full\ encTfChipPkENCFF875HHT MCF_10A POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in MCF_10A from ENCODE 3 (ENCFF875HHT) 0 930 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in MCF_10A from ENCODE 3 (ENCFF875HHT)\ parent encTfChipPk off\ shortLabel MCF_10A POLR2A 2\ subGroups cellType=MCF_10A factor=POLR2A\ track encTfChipPkENCFF875HHT\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_rev Tc:MdmToLps_04hrD3- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse 0 930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_rev Tc:MdmToLps_04hrD3- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse 1 930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor3%20%28t12%20Subject3%29.CNhs13185.12905-137I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor3 (t12 Subject3)_CNhs13185_12905-137I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12905-137I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor3T12Subject3_CNhs13185_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12905-137I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF143QTK ENCSR000DZE Signal bigWig GM12878 CHD1 ENCSR000DZE signal 2 931 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/b0c6cdc8-d6be-4525-8292-1f86c9d29481/ENCFF143QTK.bigWig\ color 254,75,173\ longLabel GM12878 CHD1 ENCSR000DZE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZE Signal\ track wgEncodeReg4TfChip_ENCFF143QTK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF335CQE ENCSR039ZVQ Signal bigWig Left renal cortex interstitium tissue male embryo 120 days DNase signal 2 931 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9b009879-29b6-47ab-8829-b98df8e06fa5/ENCFF335CQE.bigWig\ color 6,218,147\ longLabel Left renal cortex interstitium tissue male embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR039ZVQ Signal\ track wgEncodeReg4Epigenetics_ENCFF335CQE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF163AGZ ENCSR877FRY + strand bigWig Glutamatergic neuron + strand total RNA-seq signal 2 931 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/ec162758-bb3a-41e1-8ddd-6edcc92891bf/ENCFF163AGZ.bigWig\ color 155,155,18\ longLabel Glutamatergic neuron + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR877FRY + strand\ track wgEncodeReg4RnaSeq_ENCFF163AGZ\ type bigWig\ visibility full\ encTfChipPkENCFF854RVF MCF_10A STAT3 1 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF854RVF) 0 931 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF854RVF)\ parent encTfChipPk off\ shortLabel MCF_10A STAT3 1\ subGroups cellType=MCF_10A factor=STAT3\ track encTfChipPkENCFF854RVF\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_fwd Tc:MdmToLps_05hrD1+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward 0 931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_fwd Tc:MdmToLps_05hrD1+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward 1 931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF849VCQ ENCSR000DZF Peak bigBed 5 GM12878 MAX peaks 4 932 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/e735fc93-cbd5-42df-9203-7b2afd7e09b5/ENCFF849VCQ.bigBed\ labelFields none\ longLabel GM12878 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF849VCQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF125PBQ ENCSR040DGJ Peak bigBed 5 T-cell DNase peak 4 932 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/03f5aff9-5ed3-4bae-818e-3bfbb9a50c0e/ENCFF125PBQ.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040DGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF125PBQ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF207NBB ENCSR877FRY - strand bigWig Glutamatergic neuron - strand total RNA-seq signal 2 932 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/03/742f1177-e99b-4b40-bfe5-c1528714dffb/ENCFF207NBB.bigWig\ color 155,155,18\ longLabel Glutamatergic neuron - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR877FRY - strand\ track wgEncodeReg4RnaSeq_ENCFF207NBB\ type bigWig\ visibility full\ encTfChipPkENCFF199CQN MCF_10A STAT3 2 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF199CQN) 0 932 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF199CQN)\ parent encTfChipPk off\ shortLabel MCF_10A STAT3 2\ subGroups cellType=MCF_10A factor=STAT3\ track encTfChipPkENCFF199CQN\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_rev Tc:MdmToLps_05hrD1- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse 0 932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_rev Tc:MdmToLps_05hrD1- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse 1 932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor1%20%28t13%20Subject1%29.CNhs13155.12710-135F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor1 (t13 Subject1)_CNhs13155_12710-135F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12710-135F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor1T13Subject1_CNhs13155_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12710-135F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF232BTG ENCSR000DZF Signal bigWig GM12878 MAX ENCSR000DZF signal 2 933 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/4598729f-ee98-42d7-a122-a7bb88c133cc/ENCFF232BTG.bigWig\ color 254,75,173\ longLabel GM12878 MAX ENCSR000DZF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZF Signal\ track wgEncodeReg4TfChip_ENCFF232BTG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477BAL ENCSR040DGJ Signal bigWig T-cell DNase signal 2 933 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/d0d3d127-568c-41fd-997f-1fa61fe21103/ENCFF477BAL.bigWig\ color 6,218,147\ longLabel T-cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040DGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF477BAL\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF866LXF ENCSR878EUT + strand bigWig Glomerular endothelial cell female embryo (22 weeks) and male embryo (22 weeks) + strand total RNA-seq signal 2 933 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/00402603-83a0-4ad0-80a7-c2a0f724af57/ENCFF866LXF.bigWig\ color 92,161,153\ longLabel Glomerular endothelial cell female embryo (22 weeks) and male embryo (22 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR878EUT + strand\ track wgEncodeReg4RnaSeq_ENCFF866LXF\ type bigWig\ visibility full\ encTfChipPkENCFF014OJI MCF_10A STAT3 3 narrowPeak Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF014OJI) 0 933 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of STAT3 in MCF_10A from ENCODE 3 (ENCFF014OJI)\ parent encTfChipPk off\ shortLabel MCF_10A STAT3 3\ subGroups cellType=MCF_10A factor=STAT3\ track encTfChipPkENCFF014OJI\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_fwd Tc:MdmToLps_05hrD2+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward 0 933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_fwd Tc:MdmToLps_05hrD2+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward 1 933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF039QRE ENCSR000DZG Peak bigBed 5 GM12878 EP300 peaks 4 934 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/870a5ca6-fee8-47a8-8d34-1a73fc9016a7/ENCFF039QRE.bigBed\ labelFields none\ longLabel GM12878 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF039QRE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF297RNG ENCSR040DJK Peak bigBed 5 Psoas muscle tissue female adult 59 years ATAC peak 4 934 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/3bc4385f-80e0-44bd-89ba-f8ac9960d3ea/ENCFF297RNG.bigBed\ color 2,199,185\ longLabel Psoas muscle tissue female adult 59 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040DJK Peak\ track wgEncodeReg4Epigenetics_ENCFF297RNG\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF669VKT ENCSR878EUT - strand bigWig Glomerular endothelial cell female embryo (22 weeks) and male embryo (22 weeks) - strand total RNA-seq signal 2 934 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/ed1d5079-c260-441a-abbb-2b0ae45ac509/ENCFF669VKT.bigWig\ color 92,161,153\ longLabel Glomerular endothelial cell female embryo (22 weeks) and male embryo (22 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR878EUT - strand\ track wgEncodeReg4RnaSeq_ENCFF669VKT\ type bigWig\ visibility full\ encTfChipPkENCFF825ZYC MM.1S CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in MM.1S from ENCODE 3 (ENCFF825ZYC) 0 934 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in MM.1S from ENCODE 3 (ENCFF825ZYC)\ parent encTfChipPk off\ shortLabel MM.1S CTCF\ subGroups cellType=MM_1S factor=CTCF\ track encTfChipPkENCFF825ZYC\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_rev Tc:MdmToLps_05hrD2- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse 0 934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_rev Tc:MdmToLps_05hrD2- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse 1 934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor2%20%28t13%20Subject2%29.CNhs13392.12808-136G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor2 (t13 Subject2)_CNhs13392_12808-136G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12808-136G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor2T13Subject2_CNhs13392_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12808-136G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF545BXW ENCSR000DZG Signal bigWig GM12878 EP300 ENCSR000DZG signal 2 935 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/248ebecd-0f82-4af8-b571-9946c6458156/ENCFF545BXW.bigWig\ color 254,75,173\ longLabel GM12878 EP300 ENCSR000DZG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZG Signal\ track wgEncodeReg4TfChip_ENCFF545BXW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF490PBK ENCSR040DJK Signal bigWig Psoas muscle tissue female adult 59 years ATAC signal 2 935 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/d4484cbd-6d01-4a2e-9736-6180496677f0/ENCFF490PBK.bigWig\ color 2,199,185\ longLabel Psoas muscle tissue female adult 59 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040DJK Signal\ track wgEncodeReg4Epigenetics_ENCFF490PBK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF318MTJ ENCSR880EGO + strand bigWig SJSA1 + strand total RNA-seq signal 2 935 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/6cbff005-975b-4b6b-9c6d-ca80fefc5071/ENCFF318MTJ.bigWig\ color 121,147,150\ longLabel SJSA1 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR880EGO + strand\ track wgEncodeReg4RnaSeq_ENCFF318MTJ\ type bigWig\ visibility full\ encTfChipPkENCFF253WCQ MM.1S EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in MM.1S from ENCODE 3 (ENCFF253WCQ) 0 935 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in MM.1S from ENCODE 3 (ENCFF253WCQ)\ parent encTfChipPk off\ shortLabel MM.1S EZH2\ subGroups cellType=MM_1S factor=EZH2\ track encTfChipPkENCFF253WCQ\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_fwd Tc:MdmToLps_05hrD3+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward 0 935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_fwd Tc:MdmToLps_05hrD3+ bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward 1 935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF666NJR ENCSR000DZI Peak bigBed 5 GM12878 MXI1 peaks 4 936 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/eb353510-1bc8-4f52-85fd-7dff2e8dc303/ENCFF666NJR.bigBed\ labelFields none\ longLabel GM12878 MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF666NJR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF584RGS ENCSR040PBN Peak bigBed 5 HG03066 ATAC peak 4 936 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/a427d151-02d8-4b86-bbf0-611186efa58e/ENCFF584RGS.bigBed\ color 2,199,185\ longLabel HG03066 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040PBN Peak\ track wgEncodeReg4Epigenetics_ENCFF584RGS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF564LNR ENCSR880EGO - strand bigWig SJSA1 - strand total RNA-seq signal 2 936 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/1bf28046-6e14-46a5-8e97-4ededa6b7cae/ENCFF564LNR.bigWig\ color 121,147,150\ longLabel SJSA1 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR880EGO - strand\ track wgEncodeReg4RnaSeq_ENCFF564LNR\ type bigWig\ visibility full\ encTfChipPkENCFF456PDQ NB4 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in NB4 from ENCODE 3 (ENCFF456PDQ) 0 936 85 112 255 170 183 255 0 0 0 regulation 1 color 85,112,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in NB4 from ENCODE 3 (ENCFF456PDQ)\ parent encTfChipPk off\ shortLabel NB4 CTCF\ subGroups cellType=NB4 factor=CTCF\ track encTfChipPkENCFF456PDQ\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_rev Tc:MdmToLps_05hrD3- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse 0 936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_05hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_rev Tc:MdmToLps_05hrD3- bigWig Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse 1 936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2005hr%2c%20donor3%20%28t13%20Subject3%29.CNhs13186.12906-137I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 05hr, donor3 (t13 Subject3)_CNhs13186_12906-137I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12906-137I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_05hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS05hrDonor3T13Subject3_CNhs13186_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12906-137I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF122CNK ENCSR000DZI Signal bigWig GM12878 MXI1 ENCSR000DZI signal 2 937 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/591f9827-0cc2-4f29-ba8d-4ee12d547193/ENCFF122CNK.bigWig\ color 254,75,173\ longLabel GM12878 MXI1 ENCSR000DZI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZI Signal\ track wgEncodeReg4TfChip_ENCFF122CNK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF427UQD ENCSR040PBN Signal bigWig HG03066 ATAC signal 2 937 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/7a005dc4-29b7-43fc-b57e-e880ed3d05c2/ENCFF427UQD.bigWig\ color 2,199,185\ longLabel HG03066 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040PBN Signal\ track wgEncodeReg4Epigenetics_ENCFF427UQD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF396GXB ENCSR882HXI + strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal 2 937 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/a1e5a1dc-268a-4a79-a2bf-ac0df9d25e9e/ENCFF396GXB.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR882HXI + strand\ track wgEncodeReg4RnaSeq_ENCFF396GXB\ type bigWig\ visibility full\ encTfChipPkENCFF259KAD NCI-H929 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in NCI-H929 from ENCODE 3 (ENCFF259KAD) 0 937 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in NCI-H929 from ENCODE 3 (ENCFF259KAD)\ parent encTfChipPk off\ shortLabel NCI-H929 CTCF\ subGroups cellType=NCI-H929 factor=CTCF\ track encTfChipPkENCFF259KAD\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_fwd Tc:MdmToLps_08hrD1+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward 0 937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_fwd Tc:MdmToLps_08hrD1+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward 1 937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF010ZUU ENCSR000DZJ Peak bigBed 5 GM12878 BHLHE40 peaks 4 938 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/316df856-288f-4cf7-9f4a-23f9b398a760/ENCFF010ZUU.bigBed\ labelFields none\ longLabel GM12878 BHLHE40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF010ZUU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF814SDZ ENCSR040TXN Peak bigBed 5 Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 peak 4 938 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/eb1d88ce-f75c-4fa9-9fab-487cc78c952e/ENCFF814SDZ.bigBed\ color 255,0,0\ longLabel Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040TXN Peak\ track wgEncodeReg4Epigenetics_ENCFF814SDZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF144YDO ENCSR882HXI - strand bigWig Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal 2 938 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/cafff213-cced-4fcf-b813-9f3a6e671866/ENCFF144YDO.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue male adult (83 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR882HXI - strand\ track wgEncodeReg4RnaSeq_ENCFF144YDO\ type bigWig\ visibility full\ encTfChipPkENCFF226OCL NT2/D1 YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in NT2/D1 from ENCODE 3 (ENCFF226OCL) 0 938 255 173 85 255 214 170 0 0 0 regulation 1 color 255,173,85\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in NT2/D1 from ENCODE 3 (ENCFF226OCL)\ parent encTfChipPk off\ shortLabel NT2/D1 YY1\ subGroups cellType=NT2_D1 factor=YY1\ track encTfChipPkENCFF226OCL\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_rev Tc:MdmToLps_08hrD1- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse 0 938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_rev Tc:MdmToLps_08hrD1- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse 1 938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor1%20%28t16%20Subject1%29.CNhs12927.12713-135F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor1 (t16 Subject1)_CNhs12927_12713-135F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12713-135F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor1T16Subject1_CNhs12927_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12713-135F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF206VRV ENCSR000DZJ Signal bigWig GM12878 BHLHE40 ENCSR000DZJ signal 2 939 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/05cc0582-f7db-4314-a372-4b0137a72b13/ENCFF206VRV.bigWig\ color 254,75,173\ longLabel GM12878 BHLHE40 ENCSR000DZJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZJ Signal\ track wgEncodeReg4TfChip_ENCFF206VRV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF191JSX ENCSR040TXN Signal bigWig Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 signal 2 939 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/159592f7-2b23-4de9-bf44-58b620ee71ec/ENCFF191JSX.bigWig\ color 255,0,0\ longLabel Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040TXN Signal\ track wgEncodeReg4Epigenetics_ENCFF191JSX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF222RNF ENCSR882RCG + strand bigWig Heart left ventricle tissue male adult (54 years) + strand total RNA-seq signal 2 939 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/0134eb11-cb0f-4fa0-b0aa-00c3af1f92a5/ENCFF222RNF.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR882RCG + strand\ track wgEncodeReg4RnaSeq_ENCFF222RNF\ type bigWig\ visibility full\ encTfChipPkENCFF597KMH NT2/D1 ZNF274 narrowPeak Transcription Factor ChIP-seq Peaks of ZNF274 in NT2/D1 from ENCODE 3 (ENCFF597KMH) 0 939 255 173 85 255 214 170 0 0 0 regulation 1 color 255,173,85\ longLabel Transcription Factor ChIP-seq Peaks of ZNF274 in NT2/D1 from ENCODE 3 (ENCFF597KMH)\ parent encTfChipPk off\ shortLabel NT2/D1 ZNF274\ subGroups cellType=NT2_D1 factor=ZNF274\ track encTfChipPkENCFF597KMH\ MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_ctss_fwd Tc:MdmToLps_08hrD2+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_forward 0 939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor2%20%28t16%20Subject2%29.CNhs13395.12811-136H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12811-136H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_tpm_fwd Tc:MdmToLps_08hrD2+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_forward 1 939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor2%20%28t16%20Subject2%29.CNhs13395.12811-136H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12811-136H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF899QYP ENCSR000DZK Peak bigBed 5 GM12878 POLR2AphosphoS2 peaks 4 940 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/9a24e400-88a0-4303-883d-9b36f79cdddd/ENCFF899QYP.bigBed\ labelFields none\ longLabel GM12878 POLR2AphosphoS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF899QYP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF680QKA ENCSR040ZML Peak bigBed 5 Naive B cell female adult 39 years H3K27ac peak 4 940 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/22684245-c1cd-4907-804a-d78edee79a6f/ENCFF680QKA.bigBed\ color 181,145,0\ longLabel Naive B cell female adult 39 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040ZML Peak\ track wgEncodeReg4Epigenetics_ENCFF680QKA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF325WCN ENCSR882RCG - strand bigWig Heart left ventricle tissue male adult (54 years) - strand total RNA-seq signal 2 940 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/6104d6bc-017d-4a84-9af8-2696d43f6269/ENCFF325WCN.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR882RCG - strand\ track wgEncodeReg4RnaSeq_ENCFF325WCN\ type bigWig\ visibility full\ encTfChipPkENCFF713PIC OCI-LY1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY1 from ENCODE 3 (ENCFF713PIC) 0 940 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY1 from ENCODE 3 (ENCFF713PIC)\ parent encTfChipPk off\ shortLabel OCI-LY1 CTCF\ subGroups cellType=OCI-LY1 factor=CTCF\ track encTfChipPkENCFF713PIC\ MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_ctss_rev Tc:MdmToLps_08hrD2- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_reverse 0 940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor2%20%28t16%20Subject2%29.CNhs13395.12811-136H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12811-136H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_tpm_rev Tc:MdmToLps_08hrD2- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_reverse 1 940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor2%20%28t16%20Subject2%29.CNhs13395.12811-136H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor2 (t16 Subject2)_CNhs13395_12811-136H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12811-136H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor2T16Subject2_CNhs13395_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12811-136H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF353DID ENCSR000DZK Signal bigWig GM12878 POLR2AphosphoS2 ENCSR000DZK signal 2 941 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/0a3eed52-519d-49ad-915c-6b667c9b4ff6/ENCFF353DID.bigWig\ color 254,75,173\ longLabel GM12878 POLR2AphosphoS2 ENCSR000DZK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZK Signal\ track wgEncodeReg4TfChip_ENCFF353DID\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF926THG ENCSR040ZML Signal bigWig Naive B cell female adult 39 years H3K27ac signal 2 941 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/aa7cf37c-c679-4cc5-9901-0a8523d28ae7/ENCFF926THG.bigWig\ color 181,145,0\ longLabel Naive B cell female adult 39 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR040ZML Signal\ track wgEncodeReg4Epigenetics_ENCFF926THG\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF762IUC ENCSR889IAP + strand bigWig Heart right ventricle tissue male adult (61 years) + strand total RNA-seq signal 2 941 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/cf003dc1-2e5f-40ad-b900-c6dba01ec758/ENCFF762IUC.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (61 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR889IAP + strand\ track wgEncodeReg4RnaSeq_ENCFF762IUC\ type bigWig\ visibility full\ encTfChipPkENCFF520VKN OCI-LY1 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in OCI-LY1 from ENCODE 3 (ENCFF520VKN) 0 941 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in OCI-LY1 from ENCODE 3 (ENCFF520VKN)\ parent encTfChipPk off\ shortLabel OCI-LY1 EZH2\ subGroups cellType=OCI-LY1 factor=EZH2\ track encTfChipPkENCFF520VKN\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_fwd Tc:MdmToLps_08hrD3+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward 0 941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_fwd Tc:MdmToLps_08hrD3+ bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward 1 941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF887ZLZ ENCSR000DZM Peak bigBed 5 GM12878 STAT1 peaks 4 942 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/7aaa2825-43b4-4f21-be85-19008e0ceadb/ENCFF887ZLZ.bigBed\ labelFields none\ longLabel GM12878 STAT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF887ZLZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF197UBY ENCSR041UZZ Peak bigBed 5 T-helper 17 cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac peak 4 942 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/f6112e26-a5c4-4709-8a45-ab1aaf56ebe2/ENCFF197UBY.bigBed\ color 181,145,0\ longLabel T-helper 17 cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR041UZZ Peak\ track wgEncodeReg4Epigenetics_ENCFF197UBY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF957LSE ENCSR889IAP - strand bigWig Heart right ventricle tissue male adult (61 years) - strand total RNA-seq signal 2 942 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/23/82c42926-81fb-4567-a18e-0c8f9dede921/ENCFF957LSE.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (61 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR889IAP - strand\ track wgEncodeReg4RnaSeq_ENCFF957LSE\ type bigWig\ visibility full\ encTfChipPkENCFF588MSD OCI-LY3 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY3 from ENCODE 3 (ENCFF588MSD) 0 942 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY3 from ENCODE 3 (ENCFF588MSD)\ parent encTfChipPk off\ shortLabel OCI-LY3 CTCF\ subGroups cellType=OCI-LY3 factor=CTCF\ track encTfChipPkENCFF588MSD\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_rev Tc:MdmToLps_08hrD3- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse 0 942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_08hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_rev Tc:MdmToLps_08hrD3- bigWig Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse 1 942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2008hr%2c%20donor3%20%28t16%20Subject3%29.CNhs13326.12909-138A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 08hr, donor3 (t16 Subject3)_CNhs13326_12909-138A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12909-138A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_08hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS08hrDonor3T16Subject3_CNhs13326_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12909-138A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF194UWM ENCSR000DZM Signal bigWig GM12878 STAT1 ENCSR000DZM signal 2 943 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/1c01335c-b63b-4ede-aaf9-77fa8db4f033/ENCFF194UWM.bigWig\ color 254,75,173\ longLabel GM12878 STAT1 ENCSR000DZM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZM Signal\ track wgEncodeReg4TfChip_ENCFF194UWM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF209NJW ENCSR041UZZ Signal bigWig T-helper 17 cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac signal 2 943 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/afe229ea-3022-4950-ad44-98a5a9284649/ENCFF209NJW.bigWig\ color 181,145,0\ longLabel T-helper 17 cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR041UZZ Signal\ track wgEncodeReg4Epigenetics_ENCFF209NJW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF649RYB ENCSR892LBU + strand bigWig Kidney tissue female adult (47 years) + strand total RNA-seq signal 2 943 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/f5a6dedc-394d-4203-bec2-de785d08ed81/ENCFF649RYB.bigWig\ color 92,161,153\ longLabel Kidney tissue female adult (47 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR892LBU + strand\ track wgEncodeReg4RnaSeq_ENCFF649RYB\ type bigWig\ visibility full\ encTfChipPkENCFF186NOM OCI-LY7 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY7 from ENCODE 3 (ENCFF186NOM) 0 943 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in OCI-LY7 from ENCODE 3 (ENCFF186NOM)\ parent encTfChipPk off\ shortLabel OCI-LY7 CTCF\ subGroups cellType=OCI-LY7 factor=CTCF\ track encTfChipPkENCFF186NOM\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_fwd Tc:MdmToLps_10hrD2+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward 0 943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_fwd Tc:MdmToLps_10hrD2+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward 1 943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF635MMB ENCSR000DZN Peak bigBed 5 GM12878 CTCF peaks 4 944 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a1b32d36-fc74-4e06-993c-d7074365af60/ENCFF635MMB.bigBed\ labelFields none\ longLabel GM12878 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF635MMB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF633VXF ENCSR041YWB Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K27ac peak 4 944 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/970d7a6d-90ec-4b4e-98ae-70f969d56006/ENCFF633VXF.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR041YWB Peak\ track wgEncodeReg4Epigenetics_ENCFF633VXF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF531FNT ENCSR892LBU - strand bigWig Kidney tissue female adult (47 years) - strand total RNA-seq signal 2 944 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/49ce61c3-39d6-47e3-bc6d-4e24cdb509dd/ENCFF531FNT.bigWig\ color 92,161,153\ longLabel Kidney tissue female adult (47 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR892LBU - strand\ track wgEncodeReg4RnaSeq_ENCFF531FNT\ type bigWig\ visibility full\ encTfChipPkENCFF232FXZ PC-3 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in PC-3 from ENCODE 3 (ENCFF232FXZ) 0 944 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in PC-3 from ENCODE 3 (ENCFF232FXZ)\ parent encTfChipPk off\ shortLabel PC-3 CTCF\ subGroups cellType=PC-3 factor=CTCF\ track encTfChipPkENCFF232FXZ\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_rev Tc:MdmToLps_10hrD2- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse 0 944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_rev Tc:MdmToLps_10hrD2- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse 1 944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor2%20%28t17%20Subject2%29.CNhs13396.12812-136H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor2 (t17 Subject2)_CNhs13396_12812-136H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12812-136H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor2T17Subject2_CNhs13396_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12812-136H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF485CGE ENCSR000DZN Signal bigWig GM12878 CTCF ENCSR000DZN signal 2 945 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ee64f56a-89ba-4f40-84f8-733a1994ea35/ENCFF485CGE.bigWig\ color 254,75,173\ longLabel GM12878 CTCF ENCSR000DZN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZN Signal\ track wgEncodeReg4TfChip_ENCFF485CGE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF101SNA ENCSR041YWB Signal bigWig CD4-positive, alpha-beta memory T cell H3K27ac signal 2 945 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/5c182999-1b67-4583-86a2-82dd7c6e82f3/ENCFF101SNA.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR041YWB Signal\ track wgEncodeReg4Epigenetics_ENCFF101SNA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF199TSX ENCSR894WMQ + strand bigWig Myocyte originated from LHCN-M2 + strand total RNA-seq signal 2 945 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/777851b5-0dc4-4e17-94e1-bcf9b3d13cda/ENCFF199TSX.bigWig\ color 137,135,170\ longLabel Myocyte originated from LHCN-M2 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR894WMQ + strand\ track wgEncodeReg4RnaSeq_ENCFF199TSX\ type bigWig\ visibility full\ encTfChipPkENCFF702LEL PC-3 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in PC-3 from ENCODE 3 (ENCFF702LEL) 0 945 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in PC-3 from ENCODE 3 (ENCFF702LEL)\ parent encTfChipPk off\ shortLabel PC-3 EZH2\ subGroups cellType=PC-3 factor=EZH2\ track encTfChipPkENCFF702LEL\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_fwd Tc:MdmToLps_10hrD3+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward 0 945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_fwd Tc:MdmToLps_10hrD3+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward 1 945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF969FRH ENCSR000DZO Peak bigBed 5 GM12878 NRF1 peaks 4 946 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/e9038099-04a3-4ee1-b2c9-31bc381b74c8/ENCFF969FRH.bigBed\ labelFields none\ longLabel GM12878 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF969FRH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF906NBO ENCSR042AWH Peak bigBed 5 HepG2 ATAC peak 4 946 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/2c522c92-a231-46e8-81b9-c6f02fc9899d/ENCFF906NBO.bigBed\ color 2,199,185\ longLabel HepG2 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR042AWH Peak\ track wgEncodeReg4Epigenetics_ENCFF906NBO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF881PVU ENCSR894WMQ - strand bigWig Myocyte originated from LHCN-M2 - strand total RNA-seq signal 2 946 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/1d7bcaa7-76aa-4568-87a4-6659f1319e38/ENCFF881PVU.bigWig\ color 137,135,170\ longLabel Myocyte originated from LHCN-M2 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR894WMQ - strand\ track wgEncodeReg4RnaSeq_ENCFF881PVU\ type bigWig\ visibility full\ encTfChipPkENCFF616KNI PC-9 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in PC-9 from ENCODE 3 (ENCFF616KNI) 0 946 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in PC-9 from ENCODE 3 (ENCFF616KNI)\ parent encTfChipPk off\ shortLabel PC-9 CTCF\ subGroups cellType=PC-9 factor=CTCF\ track encTfChipPkENCFF616KNI\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_rev Tc:MdmToLps_10hrD3- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse 0 946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_rev Tc:MdmToLps_10hrD3- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse 1 946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor3%20%28t17%20Subject3%29.CNhs13327.12910-138A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor3 (t17 Subject3)_CNhs13327_12910-138A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12910-138A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor3T17Subject3_CNhs13327_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12910-138A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF902IBW ENCSR000DZO Signal bigWig GM12878 NRF1 ENCSR000DZO signal 2 947 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/4b676dca-c5ff-4f7f-aaf2-6ec4d034cbc8/ENCFF902IBW.bigWig\ color 254,75,173\ longLabel GM12878 NRF1 ENCSR000DZO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZO Signal\ track wgEncodeReg4TfChip_ENCFF902IBW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF664EJT ENCSR042AWH Signal bigWig HepG2 ATAC signal 2 947 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/bfb21d9d-a2eb-4ce1-a536-236ccc97eef8/ENCFF664EJT.bigWig\ color 2,199,185\ longLabel HepG2 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR042AWH Signal\ track wgEncodeReg4Epigenetics_ENCFF664EJT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF094ZZR ENCSR895ZTB + strand bigWig H1 + strand total RNA-seq signal 2 947 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/3d41d5cf-0470-4627-98ac-0c9ec1f023c3/ENCFF094ZZR.bigWig\ color 118,158,101\ longLabel H1 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR895ZTB + strand\ track wgEncodeReg4RnaSeq_ENCFF094ZZR\ type bigWig\ visibility full\ encTfChipPkENCFF476NAK PC-9 EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in PC-9 from ENCODE 3 (ENCFF476NAK) 0 947 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in PC-9 from ENCODE 3 (ENCFF476NAK)\ parent encTfChipPk off\ shortLabel PC-9 EZH2\ subGroups cellType=PC-9 factor=EZH2\ track encTfChipPkENCFF476NAK\ MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_ctss_fwd Tc:MdmToLps_12hrD1+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward 0 947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_fwd Tc:MdmToLps_12hrD1+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward 1 947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF085RLZ ENCSR000DZP Peak bigBed 5 GM12878 SMC3 peaks 4 948 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/36085c71-be55-4fd8-a264-d75bffb0058f/ENCFF085RLZ.bigBed\ labelFields none\ longLabel GM12878 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF085RLZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF978OBK ENCSR042DVU Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 74 years DNase signal 2 948 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/26fcaa84-a7b5-4ee5-9701-7165efaf4e53/ENCFF978OBK.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 74 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR042DVU Signal\ track wgEncodeReg4Epigenetics_ENCFF978OBK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF605VHG ENCSR895ZTB - strand bigWig H1 - strand total RNA-seq signal 2 948 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/3ecf3849-62a4-45e6-89da-c236a890fb3f/ENCFF605VHG.bigWig\ color 118,158,101\ longLabel H1 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR895ZTB - strand\ track wgEncodeReg4RnaSeq_ENCFF605VHG\ type bigWig\ visibility full\ encTfChipPkENCFF896RCP PFSK-1 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in PFSK-1 from ENCODE 3 (ENCFF896RCP) 0 948 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in PFSK-1 from ENCODE 3 (ENCFF896RCP)\ parent encTfChipPk off\ shortLabel PFSK-1 REST\ subGroups cellType=PFSK-1 factor=REST\ track encTfChipPkENCFF896RCP\ MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_ctss_rev Tc:MdmToLps_12hrD1- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_reverse 0 948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_rev Tc:MdmToLps_12hrD1- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_reverse 1 948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor1%20%28t18%20Subject1%29.CNhs12813.12715-135F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor1 (t18 Subject1)_CNhs12813_12715-135F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12715-135F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor1T18Subject1_CNhs12813_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12715-135F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF401YFJ ENCSR000DZP Signal bigWig GM12878 SMC3 ENCSR000DZP signal 2 949 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/3620e269-98bf-4adb-9a56-2c557ee0be29/ENCFF401YFJ.bigWig\ color 254,75,173\ longLabel GM12878 SMC3 ENCSR000DZP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZP Signal\ track wgEncodeReg4TfChip_ENCFF401YFJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF587HTJ ENCSR042ITN Peak bigBed 5 Cerebellum tissue male adult 53 years H3K4me3 peak 4 949 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/fac16503-7ee4-4cc3-b8fa-120119c2ea9d/ENCFF587HTJ.bigBed\ color 255,0,0\ longLabel Cerebellum tissue male adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR042ITN Peak\ track wgEncodeReg4Epigenetics_ENCFF587HTJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF262JRD ENCSR896YYL + strand bigWig B cell male adult (22 years) + strand total RNA-seq signal 2 949 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/96d79288-4635-4dd1-8fc6-6b0d5e778d3b/ENCFF262JRD.bigWig\ color 254,75,173\ longLabel B cell male adult (22 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR896YYL + strand\ track wgEncodeReg4RnaSeq_ENCFF262JRD\ type bigWig\ visibility full\ encTfChipPkENCFF213CYP PFSK-1 TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in PFSK-1 from ENCODE 3 (ENCFF213CYP) 0 949 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in PFSK-1 from ENCODE 3 (ENCFF213CYP)\ parent encTfChipPk off\ shortLabel PFSK-1 TAF1\ subGroups cellType=PFSK-1 factor=TAF1\ track encTfChipPkENCFF213CYP\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_ctss_fwd Tc:MdmToLps_12hrD2+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward 0 949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_fwd Tc:MdmToLps_12hrD2+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward 1 949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF167CZS ENCSR000DZQ Peak bigBed 5 GM12878 EBF1 peaks 4 950 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/9e151d63-60df-402a-82be-f94a50dd7533/ENCFF167CZS.bigBed\ labelFields none\ longLabel GM12878 EBF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF167CZS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF504XAW ENCSR042ITN Signal bigWig Cerebellum tissue male adult 53 years H3K4me3 signal 2 950 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2f1ea892-3d4d-4cc2-8acf-5349aea4c0bc/ENCFF504XAW.bigWig\ color 255,0,0\ longLabel Cerebellum tissue male adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR042ITN Signal\ track wgEncodeReg4Epigenetics_ENCFF504XAW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF984RFS ENCSR896YYL - strand bigWig B cell male adult (22 years) - strand total RNA-seq signal 2 950 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/b2af3256-3299-4879-ad5e-8643a5d6882f/ENCFF984RFS.bigWig\ color 254,75,173\ longLabel B cell male adult (22 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR896YYL - strand\ track wgEncodeReg4RnaSeq_ENCFF984RFS\ type bigWig\ visibility full\ encTfChipPkENCFF753HNR Panc1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Panc1 from ENCODE 3 (ENCFF753HNR) 0 950 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in Panc1 from ENCODE 3 (ENCFF753HNR)\ parent encTfChipPk off\ shortLabel Panc1 CTCF\ subGroups cellType=Panc1 factor=CTCF\ track encTfChipPkENCFF753HNR\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_ctss_rev Tc:MdmToLps_12hrD2- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_reverse 0 950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_rev Tc:MdmToLps_12hrD2- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_reverse 1 950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor2%20%28t18%20Subject2%29.CNhs13397.12813-136H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor2 (t18 Subject2)_CNhs13397_12813-136H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12813-136H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor2T18Subject2_CNhs13397_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12813-136H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF365IUW ENCSR000DZQ Signal bigWig GM12878 EBF1 ENCSR000DZQ signal 2 951 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0e60e282-548b-4fcf-a56c-e9db10f5d401/ENCFF365IUW.bigWig\ color 254,75,173\ longLabel GM12878 EBF1 ENCSR000DZQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZQ Signal\ track wgEncodeReg4TfChip_ENCFF365IUW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF057QLZ ENCSR042WQA Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 56 years DNase peak 4 951 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/903604d5-7ca7-44f5-8db5-a2d279e0af01/ENCFF057QLZ.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 56 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR042WQA Peak\ track wgEncodeReg4Epigenetics_ENCFF057QLZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF873UUS ENCSR897JEH + strand bigWig Calu3 + strand total RNA-seq signal 2 951 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/20/13900c0c-b640-4f51-aa3e-002eabbf7073/ENCFF873UUS.bigWig\ color 130,163,45\ longLabel Calu3 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR897JEH + strand\ track wgEncodeReg4RnaSeq_ENCFF873UUS\ type bigWig\ visibility full\ encTfChipPkENCFF713ZPE Panc1 REST narrowPeak Transcription Factor ChIP-seq Peaks of REST in Panc1 from ENCODE 3 (ENCFF713ZPE) 0 951 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel Transcription Factor ChIP-seq Peaks of REST in Panc1 from ENCODE 3 (ENCFF713ZPE)\ parent encTfChipPk off\ shortLabel Panc1 REST\ subGroups cellType=Panc1 factor=REST\ track encTfChipPkENCFF713ZPE\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_fwd Tc:MdmToLps_12hrD3+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward 0 951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_fwd Tc:MdmToLps_12hrD3+ bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward 1 951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF697XCL ENCSR000DZR Peak bigBed 5 GM12878 CHD2 peaks 4 952 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/6d0574d9-e1a1-413c-b08a-85987188d28f/ENCFF697XCL.bigBed\ labelFields none\ longLabel GM12878 CHD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF697XCL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF042RAY ENCSR042WQA Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 56 years DNase signal 2 952 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/990377ee-c992-4977-a01e-69f34da53194/ENCFF042RAY.bigWig\ color 6,218,147\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 56 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR042WQA Signal\ track wgEncodeReg4Epigenetics_ENCFF042RAY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF339JFL ENCSR897JEH - strand bigWig Calu3 - strand total RNA-seq signal 2 952 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/20/3a31b2af-3720-41ab-9aa4-36a6c509a7d0/ENCFF339JFL.bigWig\ color 130,163,45\ longLabel Calu3 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR897JEH - strand\ track wgEncodeReg4RnaSeq_ENCFF339JFL\ type bigWig\ visibility full\ encTfChipPkENCFF171XUS Panc1 TCF7L2 narrowPeak Transcription Factor ChIP-seq Peaks of TCF7L2 in Panc1 from ENCODE 3 (ENCFF171XUS) 0 952 255 141 85 255 198 170 0 0 0 regulation 1 color 255,141,85\ longLabel Transcription Factor ChIP-seq Peaks of TCF7L2 in Panc1 from ENCODE 3 (ENCFF171XUS)\ parent encTfChipPk off\ shortLabel Panc1 TCF7L2\ subGroups cellType=Panc1 factor=TCF7L2\ track encTfChipPkENCFF171XUS\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_rev Tc:MdmToLps_12hrD3- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse 0 952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_12hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_rev Tc:MdmToLps_12hrD3- bigWig Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse 1 952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2012hr%2c%20donor3%20%28t18%20Subject3%29.CNhs13328.12911-138A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 12hr, donor3 (t18 Subject3)_CNhs13328_12911-138A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12911-138A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_12hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS12hrDonor3T18Subject3_CNhs13328_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12911-138A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF138PNE ENCSR000DZR Signal bigWig GM12878 CHD2 ENCSR000DZR signal 2 953 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/b0b197a4-b084-40c9-9222-2c47554708a4/ENCFF138PNE.bigWig\ color 254,75,173\ longLabel GM12878 CHD2 ENCSR000DZR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZR Signal\ track wgEncodeReg4TfChip_ENCFF138PNE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF529XGS ENCSR044ATC Peak bigBed 5 Natural killer cell female adult 41 years ATAC peak 4 953 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/8bb5e000-b74a-40e9-a499-a868db4ee894/ENCFF529XGS.bigBed\ color 2,199,185\ longLabel Natural killer cell female adult 41 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR044ATC Peak\ track wgEncodeReg4Epigenetics_ENCFF529XGS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF726XQV ENCSR897KTO + strand bigWig Epithelial cell of alveolus of lung NONE and female embryo (21 weeks) + strand total RNA-seq signal 2 953 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/07610d97-a355-4f1d-86fc-d099be26c89a/ENCFF726XQV.bigWig\ color 130,163,45\ longLabel Epithelial cell of alveolus of lung NONE and female embryo (21 weeks) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR897KTO + strand\ track wgEncodeReg4RnaSeq_ENCFF726XQV\ type bigWig\ visibility full\ encTfChipPkENCFF509NRY parathyAdn CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Parathyroid_adenoma from ENCODE 3 (ENCFF509NRY) 0 953 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Parathyroid_adenoma from ENCODE 3 (ENCFF509NRY)\ parent encTfChipPk off\ shortLabel parathyAdn CTCF 1\ subGroups cellType=Parathyroid_adenoma factor=CTCF\ track encTfChipPkENCFF509NRY\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_fwd Tc:MdmToLps_14hrD1+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward 0 953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_fwd Tc:MdmToLps_14hrD1+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward 1 953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF082DLE ENCSR000DZS Peak bigBed 5 GM12878 BRCA1 peaks 4 954 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/e5ddff7e-db4a-42f4-863d-2f7e3514090e/ENCFF082DLE.bigBed\ labelFields none\ longLabel GM12878 BRCA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF082DLE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF496GXT ENCSR044ATC Signal bigWig Natural killer cell female adult 41 years ATAC signal 2 954 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/1d2c7cd3-0e61-4c49-9852-c4faa275521f/ENCFF496GXT.bigWig\ color 2,199,185\ longLabel Natural killer cell female adult 41 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR044ATC Signal\ track wgEncodeReg4Epigenetics_ENCFF496GXT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF871VQW ENCSR897KTO - strand bigWig Epithelial cell of alveolus of lung NONE and female embryo (21 weeks) - strand total RNA-seq signal 2 954 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/c782cee9-00ec-470a-890a-aa32532b2671/ENCFF871VQW.bigWig\ color 130,163,45\ longLabel Epithelial cell of alveolus of lung NONE and female embryo (21 weeks) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR897KTO - strand\ track wgEncodeReg4RnaSeq_ENCFF871VQW\ type bigWig\ visibility full\ encTfChipPkENCFF177UJN parathyAdn CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Parathyroid_adenoma from ENCODE 3 (ENCFF177UJN) 0 954 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Parathyroid_adenoma from ENCODE 3 (ENCFF177UJN)\ parent encTfChipPk off\ shortLabel parathyAdn CTCF 2\ subGroups cellType=Parathyroid_adenoma factor=CTCF\ track encTfChipPkENCFF177UJN\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_rev Tc:MdmToLps_14hrD1- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse 0 954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_rev Tc:MdmToLps_14hrD1- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse 1 954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor1%20%28t19%20Subject1%29.CNhs12929.12716-135F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor1 (t19 Subject1)_CNhs12929_12716-135F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12716-135F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor1T19Subject1_CNhs12929_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12716-135F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF017KXT ENCSR000DZS Signal bigWig GM12878 BRCA1 ENCSR000DZS signal 2 955 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/8709bd30-b45e-4f22-b76f-a64b059b8e23/ENCFF017KXT.bigWig\ color 254,75,173\ longLabel GM12878 BRCA1 ENCSR000DZS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZS Signal\ track wgEncodeReg4TfChip_ENCFF017KXT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF022KBV ENCSR044JIR Peak bigBed 5 Activated CD8-positive, naive alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak 4 955 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/f7358419-87ed-477e-87f4-f48d7fa41e50/ENCFF022KBV.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR044JIR Peak\ track wgEncodeReg4Epigenetics_ENCFF022KBV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF801IUE ENCSR899IVV + strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 955 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/0976824c-bf10-4b7c-a07e-05b61acb5328/ENCFF801IUE.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR899IVV + strand\ track wgEncodeReg4RnaSeq_ENCFF801IUE\ type bigWig\ visibility full\ encTfChipPkENCFF805FIF PeyerPatch CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF805FIF) 0 955 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF805FIF)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 1\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF805FIF\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_fwd Tc:MdmToLps_14hrD2+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward 0 955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_fwd Tc:MdmToLps_14hrD2+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward 1 955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF078SJX ENCSR000DZU Peak bigBed 5 GM12878 USF2 peaks 4 956 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/cb9c8167-84cc-45fb-bb36-1a46e30af658/ENCFF078SJX.bigBed\ labelFields none\ longLabel GM12878 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF078SJX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF050YCQ ENCSR044JIR Signal bigWig Activated CD8-positive, naive alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 956 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/497d97f8-206f-415c-b9d7-a633c4ef9649/ENCFF050YCQ.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR044JIR Signal\ track wgEncodeReg4Epigenetics_ENCFF050YCQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF171SRT ENCSR899IVV - strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 956 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/bcff950b-01d7-46e9-9dcd-a5fcb0a34bf5/ENCFF171SRT.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR899IVV - strand\ track wgEncodeReg4RnaSeq_ENCFF171SRT\ type bigWig\ visibility full\ encTfChipPkENCFF579XTC PeyerPatch CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF579XTC) 0 956 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF579XTC)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 2\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF579XTC\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_rev Tc:MdmToLps_14hrD2- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse 0 956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_rev Tc:MdmToLps_14hrD2- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse 1 956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor2%20%28t19%20Subject2%29.CNhs13398.12814-136H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor2 (t19 Subject2)_CNhs13398_12814-136H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12814-136H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor2T19Subject2_CNhs13398_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12814-136H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF899OET ENCSR000DZU Signal bigWig GM12878 USF2 ENCSR000DZU signal 2 957 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/6adfc11f-70d2-47e5-8ce2-2914914e585b/ENCFF899OET.bigWig\ color 254,75,173\ longLabel GM12878 USF2 ENCSR000DZU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZU Signal\ track wgEncodeReg4TfChip_ENCFF899OET\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF029GVR ENCSR045QJH Peak bigBed 5 Common myeloid progenitor, CD34-positive H3K4me3 peak 4 957 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/95edc256-3896-497d-864b-5bc869416e21/ENCFF029GVR.bigBed\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR045QJH Peak\ track wgEncodeReg4Epigenetics_ENCFF029GVR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF297UUV ENCSR899OKE + strand bigWig Placenta tissue female embryo + strand total RNA-seq signal 2 957 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/12e1dad2-1eb1-499f-9d44-8ee969f06190/ENCFF297UUV.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR899OKE + strand\ track wgEncodeReg4RnaSeq_ENCFF297UUV\ type bigWig\ visibility full\ encTfChipPkENCFF072UWP PeyerPatch CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF072UWP) 0 957 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF072UWP)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 3\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF072UWP\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_fwd Tc:MdmToLps_14hrD3+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward 0 957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_fwd Tc:MdmToLps_14hrD3+ bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward 1 957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF098ABL ENCSR000DZV Peak bigBed 5 GM12878 STAT3 peaks 4 958 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/0808e202-a82e-43f3-b16c-8ad140c550cf/ENCFF098ABL.bigBed\ labelFields none\ longLabel GM12878 STAT3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF098ABL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF581ADV ENCSR045QJH Signal bigWig Common myeloid progenitor, CD34-positive H3K4me3 signal 2 958 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/e3b11979-c61e-4d0c-beb6-1f793501c59a/ENCFF581ADV.bigWig\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR045QJH Signal\ track wgEncodeReg4Epigenetics_ENCFF581ADV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF749LNB ENCSR899OKE - strand bigWig Placenta tissue female embryo - strand total RNA-seq signal 2 958 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/9e1a51bc-08c3-4b94-aa1e-9e57ecc17a7d/ENCFF749LNB.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR899OKE - strand\ track wgEncodeReg4RnaSeq_ENCFF749LNB\ type bigWig\ visibility full\ encTfChipPkENCFF486UBE PeyerPatch CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF486UBE) 0 958 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in Peyer's_patch from ENCODE 3 (ENCFF486UBE)\ parent encTfChipPk off\ shortLabel PeyerPatch CTCF 4\ subGroups cellType=Peyers_patch factor=CTCF\ track encTfChipPkENCFF486UBE\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_rev Tc:MdmToLps_14hrD3- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse 0 958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_14hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_rev Tc:MdmToLps_14hrD3- bigWig Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse 1 958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2014hr%2c%20donor3%20%28t19%20Subject3%29.CNhs13329.12912-138A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 14hr, donor3 (t19 Subject3)_CNhs13329_12912-138A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12912-138A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_14hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS14hrDonor3T19Subject3_CNhs13329_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12912-138A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF011FHF ENCSR000DZV Signal bigWig GM12878 STAT3 ENCSR000DZV signal 2 959 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/0a26e7b5-e072-4877-93ea-f20b639f2933/ENCFF011FHF.bigWig\ color 254,75,173\ longLabel GM12878 STAT3 ENCSR000DZV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZV Signal\ track wgEncodeReg4TfChip_ENCFF011FHF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF830OBZ ENCSR046DRK Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 959 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/3447f19a-c774-4bee-a054-92efcfdce7c4/ENCFF830OBZ.bigBed\ color 181,145,0\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR046DRK Peak\ track wgEncodeReg4Epigenetics_ENCFF830OBZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF544TFG ENCSR900DUO + strand bigWig Activated T-cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours + strand total RNA-seq signal 2 959 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/3dd217b6-855b-4f66-8b5f-e4bab8ceadad/ENCFF544TFG.bigWig\ color 254,75,173\ longLabel Activated T-cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900DUO + strand\ track wgEncodeReg4RnaSeq_ENCFF544TFG\ type bigWig\ visibility full\ encTfChipPkENCFF797OLU PeyrPtch POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF797OLU) 0 959 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF797OLU)\ parent encTfChipPk off\ shortLabel PeyrPtch POLR2A 1\ subGroups cellType=Peyers_patch factor=POLR2A\ track encTfChipPkENCFF797OLU\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_fwd Tc:MdmToLps_16hrD2+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward 0 959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_fwd Tc:MdmToLps_16hrD2+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward 1 959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF768MIX ENCSR000DZW Peak bigBed 5 GM12878 RFX5 peaks 4 960 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/00bff49f-49d9-468d-a728-e2c67f474bf8/ENCFF768MIX.bigBed\ labelFields none\ longLabel GM12878 RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF768MIX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF383YEO ENCSR046DRK Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 960 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/34fadc31-f532-41af-8028-54f2475d71fd/ENCFF383YEO.bigWig\ color 181,145,0\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR046DRK Signal\ track wgEncodeReg4Epigenetics_ENCFF383YEO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF761HMP ENCSR900DUO - strand bigWig Activated T-cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours - strand total RNA-seq signal 2 960 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/30/d623a281-66c9-4432-89cf-7117e80e3adc/ENCFF761HMP.bigWig\ color 254,75,173\ longLabel Activated T-cell female adult (33 years) treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900DUO - strand\ track wgEncodeReg4RnaSeq_ENCFF761HMP\ type bigWig\ visibility full\ encTfChipPkENCFF563GSK PeyrPtch POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF563GSK) 0 960 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Peyer's_patch from ENCODE 3 (ENCFF563GSK)\ parent encTfChipPk off\ shortLabel PeyrPtch POLR2A 2\ subGroups cellType=Peyers_patch factor=POLR2A\ track encTfChipPkENCFF563GSK\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_rev Tc:MdmToLps_16hrD2- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse 0 960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_rev Tc:MdmToLps_16hrD2- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse 1 960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor2%20%28t20%20Subject2%29.CNhs13399.12815-136H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor2 (t20 Subject2)_CNhs13399_12815-136H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12815-136H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor2T20Subject2_CNhs13399_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12815-136H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF536CFB ENCSR000DZW Signal bigWig GM12878 RFX5 ENCSR000DZW signal 2 961 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/8caaae7e-d481-4651-b64a-827c0a75d7e5/ENCFF536CFB.bigWig\ color 254,75,173\ longLabel GM12878 RFX5 ENCSR000DZW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZW Signal\ track wgEncodeReg4TfChip_ENCFF536CFB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF611TJJ ENCSR047FNH Peak bigBed 5 Large intestine tissue male embryo 113 days DNase peak 4 961 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/d8b6882f-e405-47d9-a1bb-ceeb3d8f0c0e/ENCFF611TJJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue male embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR047FNH Peak\ track wgEncodeReg4Epigenetics_ENCFF611TJJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF353PFR ENCSR900FUP + strand bigWig Heart left ventricle tissue female adult (59 years) + strand total RNA-seq signal 2 961 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/389f9f86-2b21-459b-b965-6d3e95ed99d8/ENCFF353PFR.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900FUP + strand\ track wgEncodeReg4RnaSeq_ENCFF353PFR\ type bigWig\ visibility full\ encTfChipPkENCFF273HTX RWPE1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in RWPE1 from ENCODE 3 (ENCFF273HTX) 0 961 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in RWPE1 from ENCODE 3 (ENCFF273HTX)\ parent encTfChipPk off\ shortLabel RWPE1 CTCF\ subGroups cellType=RWPE1 factor=CTCF\ track encTfChipPkENCFF273HTX\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_fwd Tc:MdmToLps_16hrD3+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward 0 961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_fwd Tc:MdmToLps_16hrD3+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward 1 961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF530XSI ENCSR000DZX Peak bigBed 5 GM12878 IRF3 peaks 4 962 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/1a4a4112-f9c8-4b9c-877e-9cfb1964a50e/ENCFF530XSI.bigBed\ labelFields none\ longLabel GM12878 IRF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF530XSI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF678ZGR ENCSR047FNH Signal bigWig Large intestine tissue male embryo 113 days DNase signal 2 962 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/aaaa4a28-4fd4-4e71-b827-01bd0af985e8/ENCFF678ZGR.bigWig\ color 6,218,147\ longLabel Large intestine tissue male embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR047FNH Signal\ track wgEncodeReg4Epigenetics_ENCFF678ZGR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF861QHO ENCSR900FUP - strand bigWig Heart left ventricle tissue female adult (59 years) - strand total RNA-seq signal 2 962 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/8c3dff33-d18e-44d2-9928-b21ecd027c40/ENCFF861QHO.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900FUP - strand\ track wgEncodeReg4RnaSeq_ENCFF861QHO\ type bigWig\ visibility full\ encTfChipPkENCFF855KNL RWPE2 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in RWPE2 from ENCODE 3 (ENCFF855KNL) 0 962 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in RWPE2 from ENCODE 3 (ENCFF855KNL)\ parent encTfChipPk off\ shortLabel RWPE2 CTCF\ subGroups cellType=RWPE2 factor=CTCF\ track encTfChipPkENCFF855KNL\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_rev Tc:MdmToLps_16hrD3- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse 0 962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_rev Tc:MdmToLps_16hrD3- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse 1 962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor3%20%28t20%20Subject3%29.CNhs13330.12913-138A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor3 (t20 Subject3)_CNhs13330_12913-138A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12913-138A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor3T20Subject3_CNhs13330_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12913-138A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF806XAD ENCSR000DZX Signal bigWig GM12878 IRF3 ENCSR000DZX signal 2 963 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/8f42bd42-327d-4ab9-9820-b3fa6c1c6463/ENCFF806XAD.bigWig\ color 254,75,173\ longLabel GM12878 IRF3 ENCSR000DZX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZX Signal\ track wgEncodeReg4TfChip_ENCFF806XAD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF325UHI ENCSR047WCC Peak bigBed 5 Dendritic cell male adult 51 years H3K4me3 peak 4 963 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/494de578-a38f-46bd-ab54-3d29936464a1/ENCFF325UHI.bigBed\ color 255,0,0\ longLabel Dendritic cell male adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR047WCC Peak\ track wgEncodeReg4Epigenetics_ENCFF325UHI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF149ROH ENCSR900GIC + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (74 years) + strand total RNA-seq signal 2 963 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/bee53c87-0964-42b8-94e7-92b71d6fb491/ENCFF149ROH.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (74 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900GIC + strand\ track wgEncodeReg4RnaSeq_ENCFF149ROH\ type bigWig\ visibility full\ encTfChipPkENCFF798HCA Raji POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in Raji from ENCODE 3 (ENCFF798HCA) 0 963 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in Raji from ENCODE 3 (ENCFF798HCA)\ parent encTfChipPk off\ shortLabel Raji POLR2A\ subGroups cellType=Raji factor=POLR2A\ track encTfChipPkENCFF798HCA\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_fwd Tc:MdmToLps_18hrD1+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward 0 963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_fwd Tc:MdmToLps_18hrD1+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward 1 963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF571OXR ENCSR000DZZ Peak bigBed 5 GM12878 TBP peaks 4 964 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/56d95cf2-425a-4915-a8d5-d4c043aee938/ENCFF571OXR.bigBed\ labelFields none\ longLabel GM12878 TBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF571OXR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF300TPQ ENCSR047WCC Signal bigWig Dendritic cell male adult 51 years H3K4me3 signal 2 964 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/bb3296c5-c8ac-4570-aab2-354f4b17c1a2/ENCFF300TPQ.bigWig\ color 255,0,0\ longLabel Dendritic cell male adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR047WCC Signal\ track wgEncodeReg4Epigenetics_ENCFF300TPQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF507HQY ENCSR900GIC - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (74 years) - strand total RNA-seq signal 2 964 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/3bb2dcb2-7d26-4db9-a7d3-8c078babc53f/ENCFF507HQY.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (74 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900GIC - strand\ track wgEncodeReg4RnaSeq_ENCFF507HQY\ type bigWig\ visibility full\ encTfChipPkENCFF064YWN SH-SY5Y GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in SH-SY5Y from ENCODE 3 (ENCFF064YWN) 0 964 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA2 in SH-SY5Y from ENCODE 3 (ENCFF064YWN)\ parent encTfChipPk off\ shortLabel SH-SY5Y GATA2\ subGroups cellType=SH-SY5Y factor=GATA2\ track encTfChipPkENCFF064YWN\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_rev Tc:MdmToLps_18hrD1- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse 0 964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_rev Tc:MdmToLps_18hrD1- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse 1 964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor1%20%28t21%20Subject1%29.CNhs12814.12718-135F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor1 (t21 Subject1)_CNhs12814_12718-135F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12718-135F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor1T21Subject1_CNhs12814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12718-135F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF017ZEX ENCSR000DZZ Signal bigWig GM12878 TBP ENCSR000DZZ signal 2 965 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/23e03926-187a-42fa-a119-3fc4bdeb5d11/ENCFF017ZEX.bigWig\ color 254,75,173\ longLabel GM12878 TBP ENCSR000DZZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000DZZ Signal\ track wgEncodeReg4TfChip_ENCFF017ZEX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF471RWN ENCSR048ARD Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 965 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/40cf7997-0e9f-4706-bb92-452be8af4822/ENCFF471RWN.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR048ARD Peak\ track wgEncodeReg4Epigenetics_ENCFF471RWN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF359MDK ENCSR900SGE + strand bigWig Spleen tissue female adult (53 years) + strand total RNA-seq signal 2 965 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/634173e8-87aa-4fe5-8c24-c83fecadfcef/ENCFF359MDK.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900SGE + strand\ track wgEncodeReg4RnaSeq_ENCFF359MDK\ type bigWig\ visibility full\ encTfChipPkENCFF626MUS SH-SY5Y GATA3 narrowPeak Transcription Factor ChIP-seq Peaks of GATA3 in SH-SY5Y from ENCODE 3 (ENCFF626MUS) 0 965 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA3 in SH-SY5Y from ENCODE 3 (ENCFF626MUS)\ parent encTfChipPk off\ shortLabel SH-SY5Y GATA3\ subGroups cellType=SH-SY5Y factor=GATA3\ track encTfChipPkENCFF626MUS\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_fwd Tc:MdmToLps_18hrD2+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward 0 965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_fwd Tc:MdmToLps_18hrD2+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward 1 965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF384UKU ENCSR000EAA Peak bigBed 5 GM12878 WRNIP1 peaks 4 966 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/c96222b5-90ca-4f9f-ae7c-c0a4afac58ea/ENCFF384UKU.bigBed\ labelFields none\ longLabel GM12878 WRNIP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF384UKU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF715NMW ENCSR048ARD Signal bigWig CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 966 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/1254583b-ffab-482a-85fb-a80e4649c608/ENCFF715NMW.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR048ARD Signal\ track wgEncodeReg4Epigenetics_ENCFF715NMW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF110DHB ENCSR900SGE - strand bigWig Spleen tissue female adult (53 years) - strand total RNA-seq signal 2 966 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/57e4d36c-dde9-4c7e-b8a5-8e4601437694/ENCFF110DHB.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR900SGE - strand\ track wgEncodeReg4RnaSeq_ENCFF110DHB\ type bigWig\ visibility full\ encTfChipPkENCFF035WFT SK-N-MC EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in SK-N-MC from ENCODE 3 (ENCFF035WFT) 0 966 176 85 255 215 170 255 0 0 0 regulation 1 color 176,85,255\ longLabel Transcription Factor ChIP-seq Peaks of EZH2 in SK-N-MC from ENCODE 3 (ENCFF035WFT)\ parent encTfChipPk off\ shortLabel SK-N-MC EZH2\ subGroups cellType=SK-N-MC factor=EZH2\ track encTfChipPkENCFF035WFT\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_rev Tc:MdmToLps_18hrD2- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse 0 966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_rev Tc:MdmToLps_18hrD2- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse 1 966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor2%20%28t21%20Subject2%29.CNhs13400.12816-136H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor2 (t21 Subject2)_CNhs13400_12816-136H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12816-136H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor2T21Subject2_CNhs13400_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12816-136H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF956PLX ENCSR000EAA Signal bigWig GM12878 WRNIP1 ENCSR000EAA signal 2 967 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/b4b990d9-daec-41d6-959b-ee843da5481f/ENCFF956PLX.bigWig\ color 254,75,173\ longLabel GM12878 WRNIP1 ENCSR000EAA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAA Signal\ track wgEncodeReg4TfChip_ENCFF956PLX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF812KXM ENCSR049KUR Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 967 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/19b07259-538b-43f6-aa2a-a309b93deef6/ENCFF812KXM.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR049KUR Peak\ track wgEncodeReg4Epigenetics_ENCFF812KXM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF430NYX ENCSR903XMI + strand bigWig Placenta tissue female embryo + strand total RNA-seq signal 2 967 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/7e666e7a-ea6a-46a6-b068-2d9e08429a4f/ENCFF430NYX.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR903XMI + strand\ track wgEncodeReg4RnaSeq_ENCFF430NYX\ type bigWig\ visibility full\ encTfChipPkENCFF049UCF SK-N-SH CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF049UCF) 0 967 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF049UCF)\ parent encTfChipPk off\ shortLabel SK-N-SH CTCF 1\ subGroups cellType=SK-N-SH factor=CTCF\ track encTfChipPkENCFF049UCF\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_fwd Tc:MdmToLps_18hrD3+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward 0 967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_fwd Tc:MdmToLps_18hrD3+ bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward 1 967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF046CBW ENCSR000EAC Peak bigBed 5 GM12878 RAD21 peaks 4 968 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/0224d850-92f8-4b7f-93b2-e7e146f6fe2d/ENCFF046CBW.bigBed\ labelFields none\ longLabel GM12878 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF046CBW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF878BKX ENCSR049KUR Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 968 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/b473cb6e-4dad-4014-ba64-40fd345349ad/ENCFF878BKX.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR049KUR Signal\ track wgEncodeReg4Epigenetics_ENCFF878BKX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF305RDA ENCSR903XMI - strand bigWig Placenta tissue female embryo - strand total RNA-seq signal 2 968 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/1d42b988-85ec-4375-928e-29714e24b5d5/ENCFF305RDA.bigWig\ color 104,171,71\ longLabel Placenta tissue female embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR903XMI - strand\ track wgEncodeReg4RnaSeq_ENCFF305RDA\ type bigWig\ visibility full\ encTfChipPkENCFF685KTA SK-N-SH CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF685KTA) 0 968 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF685KTA)\ parent encTfChipPk off\ shortLabel SK-N-SH CTCF 2\ subGroups cellType=SK-N-SH factor=CTCF\ track encTfChipPkENCFF685KTA\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_rev Tc:MdmToLps_18hrD3- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse 0 968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_18hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_rev Tc:MdmToLps_18hrD3- bigWig Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse 1 968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2018hr%2c%20donor3%20%28t21%20Subject3%29.CNhs13331.12914-138A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 18hr, donor3 (t21 Subject3)_CNhs13331_12914-138A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12914-138A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_18hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS18hrDonor3T21Subject3_CNhs13331_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12914-138A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF571ZJJ ENCSR000EAC Signal bigWig GM12878 RAD21 ENCSR000EAC signal 2 969 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/9ba7968a-5c23-4017-b483-bc7266dc863e/ENCFF571ZJJ.bigWig\ color 254,75,173\ longLabel GM12878 RAD21 ENCSR000EAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAC Signal\ track wgEncodeReg4TfChip_ENCFF571ZJJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF322RXX ENCSR049SVH Peak bigBed 5 Brain organoid male adult 53 years, 180 days post differentiation DNase peak 4 969 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/73e37783-2d46-411c-90d5-b59aab37686b/ENCFF322RXX.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain organoid male adult 53 years, 180 days post differentiation DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR049SVH Peak\ track wgEncodeReg4Epigenetics_ENCFF322RXX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF003SKI ENCSR908ZAS + strand bigWig Hepatocyte originated from H9 + strand total RNA-seq signal 2 969 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/5656b6b7-d018-4146-b66d-a4aa0becb30e/ENCFF003SKI.bigWig\ color 137,152,82\ longLabel Hepatocyte originated from H9 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR908ZAS + strand\ track wgEncodeReg4RnaSeq_ENCFF003SKI\ type bigWig\ visibility full\ encTfChipPkENCFF540DWT SK-N-SH CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF540DWT) 0 969 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in SK-N-SH from ENCODE 3 (ENCFF540DWT)\ parent encTfChipPk off\ shortLabel SK-N-SH CTCF 3\ subGroups cellType=SK-N-SH factor=CTCF\ track encTfChipPkENCFF540DWT\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_fwd Tc:MdmToLps_20hrD1+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward 0 969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_fwd Tc:MdmToLps_20hrD1+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward 1 969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF263VRI ENCSR000EAD Peak bigBed 5 GM12878 POLR2A peaks 4 970 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/57c852b9-daa4-4f10-9fc7-6e27ccafe4c7/ENCFF263VRI.bigBed\ labelFields none\ longLabel GM12878 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF263VRI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF110ZAI ENCSR049SVH Signal bigWig Brain organoid male adult 53 years, 180 days post differentiation DNase signal 2 970 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/814014e2-04b5-43ed-8a66-d03d53ba5928/ENCFF110ZAI.bigWig\ color 6,218,147\ longLabel Brain organoid male adult 53 years, 180 days post differentiation DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR049SVH Signal\ track wgEncodeReg4Epigenetics_ENCFF110ZAI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF807SPN ENCSR908ZAS - strand bigWig Hepatocyte originated from H9 - strand total RNA-seq signal 2 970 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/bcce38de-bc77-4f10-96ec-bc0c6ff3428d/ENCFF807SPN.bigWig\ color 137,152,82\ longLabel Hepatocyte originated from H9 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR908ZAS - strand\ track wgEncodeReg4RnaSeq_ENCFF807SPN\ type bigWig\ visibility full\ encTfChipPkENCFF917TPE SK-N-SH IRF3 narrowPeak Transcription Factor ChIP-seq Peaks of IRF3 in SK-N-SH from ENCODE 3 (ENCFF917TPE) 0 970 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of IRF3 in SK-N-SH from ENCODE 3 (ENCFF917TPE)\ parent encTfChipPk off\ shortLabel SK-N-SH IRF3\ subGroups cellType=SK-N-SH factor=IRF3\ track encTfChipPkENCFF917TPE\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_rev Tc:MdmToLps_20hrD1- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse 0 970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_rev Tc:MdmToLps_20hrD1- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse 1 970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor1%20%28t22%20Subject1%29.CNhs12931.12719-135G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor1 (t22 Subject1)_CNhs12931_12719-135G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12719-135G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor1T22Subject1_CNhs12931_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12719-135G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF328MMS ENCSR000EAD Signal bigWig GM12878 POLR2A ENCSR000EAD signal 2 971 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5b74fd86-ce41-4516-a959-6fe11ee557b0/ENCFF328MMS.bigWig\ color 254,75,173\ longLabel GM12878 POLR2A ENCSR000EAD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAD Signal\ track wgEncodeReg4TfChip_ENCFF328MMS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF917QTZ ENCSR050VTC Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase peak 4 971 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/7c280ad8-b3f2-4da5-979f-1bb877893ce0/ENCFF917QTZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR050VTC Peak\ track wgEncodeReg4Epigenetics_ENCFF917QTZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF107LSA ENCSR911XSA + strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) + strand total RNA-seq signal 2 971 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/93dbbe34-689c-4bbf-86ec-06bf7ba17d92/ENCFF107LSA.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR911XSA + strand\ track wgEncodeReg4RnaSeq_ENCFF107LSA\ type bigWig\ visibility full\ encTfChipPkENCFF246HKM SK-N-SH JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF246HKM) 0 971 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF246HKM)\ parent encTfChipPk off\ shortLabel SK-N-SH JUND 1\ subGroups cellType=SK-N-SH factor=JUND\ track encTfChipPkENCFF246HKM\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_fwd Tc:MdmToLps_20hrD2+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward 0 971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_fwd Tc:MdmToLps_20hrD2+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward 1 971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF012SUT ENCSR000EAJ Peak bigBed 5 GM12891 POLR2A peaks 4 972 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/269573d7-2d45-42e2-a0fb-64ba8add037d/ENCFF012SUT.bigBed\ labelFields none\ longLabel GM12891 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF012SUT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF074ZSQ ENCSR050VTC Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase signal 2 972 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/61405be3-e729-4c8f-a474-47a1ad0407e6/ENCFF074ZSQ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR050VTC Signal\ track wgEncodeReg4Epigenetics_ENCFF074ZSQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF938XDX ENCSR911XSA - strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) - strand total RNA-seq signal 2 972 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/9e054f34-6276-4980-bf84-b3b389b9ac0f/ENCFF938XDX.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR911XSA - strand\ track wgEncodeReg4RnaSeq_ENCFF938XDX\ type bigWig\ visibility full\ encTfChipPkENCFF187QQB SK-N-SH JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF187QQB) 0 972 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of JUND in SK-N-SH from ENCODE 3 (ENCFF187QQB)\ parent encTfChipPk off\ shortLabel SK-N-SH JUND 2\ subGroups cellType=SK-N-SH factor=JUND\ track encTfChipPkENCFF187QQB\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_rev Tc:MdmToLps_20hrD2- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse 0 972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_rev Tc:MdmToLps_20hrD2- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse 1 972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor2%20%28t22%20Subject2%29.CNhs13401.12817-136H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor2 (t22 Subject2)_CNhs13401_12817-136H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12817-136H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor2T22Subject2_CNhs13401_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12817-136H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF391SAJ ENCSR000EAJ Signal bigWig GM12891 POLR2A ENCSR000EAJ signal 2 973 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/03a6f531-0541-4445-a94a-f72338dba2c2/ENCFF391SAJ.bigWig\ color 254,75,173\ longLabel GM12891 POLR2A ENCSR000EAJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAJ Signal\ track wgEncodeReg4TfChip_ENCFF391SAJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF233XBE ENCSR051CYH Peak bigBed 5 T-cell male adult 42 years DNase peak 4 973 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/8bab520a-f7bc-4386-b169-7fda52e4e327/ENCFF233XBE.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 42 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR051CYH Peak\ track wgEncodeReg4Epigenetics_ENCFF233XBE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF096TRE ENCSR914PRM + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 973 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/11410de0-c0b2-4eed-8710-6005f22d02e0/ENCFF096TRE.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR914PRM + strand\ track wgEncodeReg4RnaSeq_ENCFF096TRE\ type bigWig\ visibility full\ encTfChipPkENCFF116RCK SK-N-SH MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in SK-N-SH from ENCODE 3 (ENCFF116RCK) 0 973 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of MXI1 in SK-N-SH from ENCODE 3 (ENCFF116RCK)\ parent encTfChipPk off\ shortLabel SK-N-SH MXI1\ subGroups cellType=SK-N-SH factor=MXI1\ track encTfChipPkENCFF116RCK\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_fwd Tc:MdmToLps_20hrD3+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward 0 973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_fwd Tc:MdmToLps_20hrD3+ bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward 1 973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF506PGQ ENCSR000EAM Peak bigBed 5 GM12892 POLR2A peaks 4 974 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/bf5149e9-76a8-42da-82d6-732760763868/ENCFF506PGQ.bigBed\ labelFields none\ longLabel GM12892 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF506PGQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF506DVU ENCSR051CYH Signal bigWig T-cell male adult 42 years DNase signal 2 974 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/45d5c43d-e752-4933-aa34-0c1ba6553fbf/ENCFF506DVU.bigWig\ color 6,218,147\ longLabel T-cell male adult 42 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR051CYH Signal\ track wgEncodeReg4Epigenetics_ENCFF506DVU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF809AXM ENCSR914PRM - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 974 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/66da165b-5dd5-42ca-8f70-2a23ac283172/ENCFF809AXM.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR914PRM - strand\ track wgEncodeReg4RnaSeq_ENCFF809AXM\ type bigWig\ visibility full\ encTfChipPkENCFF557OCR SK-N-SH RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in SK-N-SH from ENCODE 3 (ENCFF557OCR) 0 974 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of RAD21 in SK-N-SH from ENCODE 3 (ENCFF557OCR)\ parent encTfChipPk off\ shortLabel SK-N-SH RAD21\ subGroups cellType=SK-N-SH factor=RAD21\ track encTfChipPkENCFF557OCR\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_rev Tc:MdmToLps_20hrD3- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse 0 974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_20hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_rev Tc:MdmToLps_20hrD3- bigWig Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse 1 974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2020hr%2c%20donor3%20%28t22%20Subject3%29.CNhs13332.12915-138A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 20hr, donor3 (t22 Subject3)_CNhs13332_12915-138A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12915-138A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_20hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS20hrDonor3T22Subject3_CNhs13332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12915-138A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF266HKY ENCSR000EAM Signal bigWig GM12892 POLR2A ENCSR000EAM signal 2 975 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/226d9f57-dea4-4b65-9c81-badfeb4dae01/ENCFF266HKY.bigWig\ color 254,75,173\ longLabel GM12892 POLR2A ENCSR000EAM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAM Signal\ track wgEncodeReg4TfChip_ENCFF266HKY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF887OJR ENCSR051QLZ Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K27ac peak 4 975 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/65d3c867-9998-499b-ac64-1a16c640d745/ENCFF887OJR.bigBed\ color 181,145,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR051QLZ Peak\ track wgEncodeReg4Epigenetics_ENCFF887OJR\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF043VUO ENCSR915EBZ + strand bigWig Heart right ventricle tissue male adult (40 years) + strand total RNA-seq signal 2 975 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/f0bfbfbd-c4ed-47fc-a37c-35f429e5e825/ENCFF043VUO.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (40 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR915EBZ + strand\ track wgEncodeReg4RnaSeq_ENCFF043VUO\ type bigWig\ visibility full\ encTfChipPkENCFF073ADA SK-N-SH RCOR1 narrowPeak Transcription Factor ChIP-seq Peaks of RCOR1 in SK-N-SH from ENCODE 3 (ENCFF073ADA) 0 975 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of RCOR1 in SK-N-SH from ENCODE 3 (ENCFF073ADA)\ parent encTfChipPk off\ shortLabel SK-N-SH RCOR1\ subGroups cellType=SK-N-SH factor=RCOR1\ track encTfChipPkENCFF073ADA\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_fwd Tc:MdmToLps_22hrD1+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward 0 975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_fwd Tc:MdmToLps_22hrD1+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward 1 975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF880HVJ ENCSR000EAR Peak bigBed 5 GM15510 POLR2A peaks 4 976 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ba0875a5-3f7a-4342-be06-68a76276a875/ENCFF880HVJ.bigBed\ labelFields none\ longLabel GM15510 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF880HVJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF224LYA ENCSR051QLZ Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K27ac signal 2 976 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6ae820de-9041-49fe-be36-720131b6cdcc/ENCFF224LYA.bigWig\ color 181,145,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR051QLZ Signal\ track wgEncodeReg4Epigenetics_ENCFF224LYA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF208LKU ENCSR915EBZ - strand bigWig Heart right ventricle tissue male adult (40 years) - strand total RNA-seq signal 2 976 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/8184ef7b-a603-4055-ba65-3ad05879dc08/ENCFF208LKU.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (40 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR915EBZ - strand\ track wgEncodeReg4RnaSeq_ENCFF208LKU\ type bigWig\ visibility full\ encTfChipPkENCFF540FXB SK-N-SH REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF540FXB) 0 976 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF540FXB)\ parent encTfChipPk off\ shortLabel SK-N-SH REST 1\ subGroups cellType=SK-N-SH factor=REST\ track encTfChipPkENCFF540FXB\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_rev Tc:MdmToLps_22hrD1- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse 0 976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_rev Tc:MdmToLps_22hrD1- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse 1 976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor1%20%28t23%20Subject1%29.CNhs12815.12720-135G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor1 (t23 Subject1)_CNhs12815_12720-135G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12720-135G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor1T23Subject1_CNhs12815_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12720-135G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF076QUF ENCSR000EAR Signal bigWig GM15510 POLR2A ENCSR000EAR signal 2 977 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/acdf8914-e8ba-40d3-af44-845aa8f73b70/ENCFF076QUF.bigWig\ color 254,75,173\ longLabel GM15510 POLR2A ENCSR000EAR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAR Signal\ track wgEncodeReg4TfChip_ENCFF076QUF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF765VOP ENCSR052AWE Peak bigBed 5 PC-3 DNase peak 4 977 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/6bcb998f-28dd-4d7f-b325-c6b99bcb6b3f/ENCFF765VOP.bigBed\ color 6,218,147\ labelFields none\ longLabel PC-3 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR052AWE Peak\ track wgEncodeReg4Epigenetics_ENCFF765VOP\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF403HKJ ENCSR919MZM + strand bigWig Endometrial microvascular endothelial cells female adult (34 years) + strand total RNA-seq signal 2 977 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/55e8b86f-14ce-4328-86f5-063150958736/ENCFF403HKJ.bigWig\ color 255,37,41\ longLabel Endometrial microvascular endothelial cells female adult (34 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR919MZM + strand\ track wgEncodeReg4RnaSeq_ENCFF403HKJ\ type bigWig\ visibility full\ encTfChipPkENCFF796YFZ SK-N-SH REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF796YFZ) 0 977 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of REST in SK-N-SH from ENCODE 3 (ENCFF796YFZ)\ parent encTfChipPk off\ shortLabel SK-N-SH REST 2\ subGroups cellType=SK-N-SH factor=REST\ track encTfChipPkENCFF796YFZ\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_fwd Tc:MdmToLps_22hrD2+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward 0 977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_fwd Tc:MdmToLps_22hrD2+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward 1 977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF311CYB ENCSR000EAU Peak bigBed 5 GM18505 POLR2A peaks 4 978 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ef61aaf1-fa32-4489-acfd-d5a3248f842e/ENCFF311CYB.bigBed\ labelFields none\ longLabel GM18505 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF311CYB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF599UKS ENCSR052AWE Signal bigWig PC-3 DNase signal 2 978 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b30bdf94-610e-48e7-bec8-c9bb82881377/ENCFF599UKS.bigWig\ color 6,218,147\ longLabel PC-3 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR052AWE Signal\ track wgEncodeReg4Epigenetics_ENCFF599UKS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF665SWA ENCSR919MZM - strand bigWig Endometrial microvascular endothelial cells female adult (34 years) - strand total RNA-seq signal 2 978 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/effa679a-1a1f-406e-afb8-c90fe9a73522/ENCFF665SWA.bigWig\ color 255,37,41\ longLabel Endometrial microvascular endothelial cells female adult (34 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR919MZM - strand\ track wgEncodeReg4RnaSeq_ENCFF665SWA\ type bigWig\ visibility full\ encTfChipPkENCFF502JJJ SK-N-SH RFX5 narrowPeak Transcription Factor ChIP-seq Peaks of RFX5 in SK-N-SH from ENCODE 3 (ENCFF502JJJ) 0 978 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of RFX5 in SK-N-SH from ENCODE 3 (ENCFF502JJJ)\ parent encTfChipPk off\ shortLabel SK-N-SH RFX5\ subGroups cellType=SK-N-SH factor=RFX5\ track encTfChipPkENCFF502JJJ\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_rev Tc:MdmToLps_22hrD2- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse 0 978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_rev Tc:MdmToLps_22hrD2- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse 1 978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor2%20%28t23%20Subject2%29.CNhs13402.12818-136I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor2 (t23 Subject2)_CNhs13402_12818-136I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12818-136I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor2T23Subject2_CNhs13402_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12818-136I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF747IOW ENCSR000EAU Signal bigWig GM18505 POLR2A ENCSR000EAU signal 2 979 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/10911c03-1ddd-4c07-ae0c-df3a2ef15c4a/ENCFF747IOW.bigWig\ color 254,75,173\ longLabel GM18505 POLR2A ENCSR000EAU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAU Signal\ track wgEncodeReg4TfChip_ENCFF747IOW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF288BEN ENCSR052KGC Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak 4 979 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9d7f3134-17fc-43a4-8beb-389d07beffe9/ENCFF288BEN.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR052KGC Peak\ track wgEncodeReg4Epigenetics_ENCFF288BEN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF396BMJ ENCSR919QJT + strand bigWig H4 + strand total RNA-seq signal 2 979 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/5ac614a2-9f20-499d-a581-cdea87ed449c/ENCFF396BMJ.bigWig\ color 155,155,18\ longLabel H4 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR919QJT + strand\ track wgEncodeReg4RnaSeq_ENCFF396BMJ\ type bigWig\ visibility full\ encTfChipPkENCFF663RUS SK-N-SH SIN3A narrowPeak Transcription Factor ChIP-seq Peaks of SIN3A in SK-N-SH from ENCODE 3 (ENCFF663RUS) 0 979 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of SIN3A in SK-N-SH from ENCODE 3 (ENCFF663RUS)\ parent encTfChipPk off\ shortLabel SK-N-SH SIN3A\ subGroups cellType=SK-N-SH factor=SIN3A\ track encTfChipPkENCFF663RUS\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_fwd Tc:MdmToLps_22hrD3+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward 0 979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_fwd Tc:MdmToLps_22hrD3+ bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward 1 979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF599EPS ENCSR000EAY Peak bigBed 5 GM18526 POLR2A peaks 4 980 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/d31c5e54-dea1-460d-b74a-b867d2d020ff/ENCFF599EPS.bigBed\ labelFields none\ longLabel GM18526 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF599EPS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF797TAU ENCSR052KGC Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal 2 980 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c23c1831-092d-4d1d-93ba-449ca625de8d/ENCFF797TAU.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR052KGC Signal\ track wgEncodeReg4Epigenetics_ENCFF797TAU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF915MPM ENCSR919QJT - strand bigWig H4 - strand total RNA-seq signal 2 980 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/26766739-1e21-4a79-b7aa-8fa7de4c866d/ENCFF915MPM.bigWig\ color 155,155,18\ longLabel H4 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR919QJT - strand\ track wgEncodeReg4RnaSeq_ENCFF915MPM\ type bigWig\ visibility full\ encTfChipPkENCFF423CTO SK-N-SH TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in SK-N-SH from ENCODE 3 (ENCFF423CTO) 0 980 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of TAF1 in SK-N-SH from ENCODE 3 (ENCFF423CTO)\ parent encTfChipPk off\ shortLabel SK-N-SH TAF1\ subGroups cellType=SK-N-SH factor=TAF1\ track encTfChipPkENCFF423CTO\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_rev Tc:MdmToLps_22hrD3- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse 0 980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_22hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_rev Tc:MdmToLps_22hrD3- bigWig Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse 1 980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2022hr%2c%20donor3%20%28t23%20Subject3%29.CNhs13333.12916-138A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 22hr, donor3 (t23 Subject3)_CNhs13333_12916-138A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12916-138A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_22hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS22hrDonor3T23Subject3_CNhs13333_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12916-138A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF630NHO ENCSR000EAY Signal bigWig GM18526 POLR2A ENCSR000EAY signal 2 981 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/376dfab4-a876-4145-bf07-fc21ab49bf6d/ENCFF630NHO.bigWig\ color 254,75,173\ longLabel GM18526 POLR2A ENCSR000EAY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EAY Signal\ track wgEncodeReg4TfChip_ENCFF630NHO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF766GGI ENCSR052WRV Peak bigBed 5 DOHH2 H3K4me3 peak 4 981 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e662e4ef-7c45-41e7-a051-34c17e035fc0/ENCFF766GGI.bigBed\ color 255,0,0\ longLabel DOHH2 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR052WRV Peak\ track wgEncodeReg4Epigenetics_ENCFF766GGI\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF324FQI ENCSR920OZR + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 981 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/4e8db419-c730-4961-9995-5340dd3e266c/ENCFF324FQI.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR920OZR + strand\ track wgEncodeReg4RnaSeq_ENCFF324FQI\ type bigWig\ visibility full\ encTfChipPkENCFF452RZW SK-N-SH USF1 narrowPeak Transcription Factor ChIP-seq Peaks of USF1 in SK-N-SH from ENCODE 3 (ENCFF452RZW) 0 981 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of USF1 in SK-N-SH from ENCODE 3 (ENCFF452RZW)\ parent encTfChipPk off\ shortLabel SK-N-SH USF1\ subGroups cellType=SK-N-SH factor=USF1\ track encTfChipPkENCFF452RZW\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_fwd Tc:MdmToLps_24hrD1+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward 0 981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_fwd Tc:MdmToLps_24hrD1+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward 1 981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF079KKO ENCSR000EBC Peak bigBed 5 GM18951 POLR2A peaks 4 982 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/6da24e34-d0f6-4792-9849-de34af632090/ENCFF079KKO.bigBed\ labelFields none\ longLabel GM18951 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF079KKO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF398AIV ENCSR052WRV Signal bigWig DOHH2 H3K4me3 signal 2 982 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5cd928f0-eff5-4ea0-b3da-1da07cd344a0/ENCFF398AIV.bigWig\ color 255,0,0\ longLabel DOHH2 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR052WRV Signal\ track wgEncodeReg4Epigenetics_ENCFF398AIV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF373YQC ENCSR920OZR - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 982 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/5ba03ad9-ef3e-4d75-9076-b8e86becdf01/ENCFF373YQC.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR920OZR - strand\ track wgEncodeReg4RnaSeq_ENCFF373YQC\ type bigWig\ visibility full\ encTfChipPkENCFF261PAC SK-N-SH USF2 narrowPeak Transcription Factor ChIP-seq Peaks of USF2 in SK-N-SH from ENCODE 3 (ENCFF261PAC) 0 982 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of USF2 in SK-N-SH from ENCODE 3 (ENCFF261PAC)\ parent encTfChipPk off\ shortLabel SK-N-SH USF2\ subGroups cellType=SK-N-SH factor=USF2\ track encTfChipPkENCFF261PAC\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_rev Tc:MdmToLps_24hrD1- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse 0 982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_rev Tc:MdmToLps_24hrD1- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse 1 982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor1%20%28t24%20Subject1%29.CNhs12932.12721-135G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor1 (t24 Subject1)_CNhs12932_12721-135G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12721-135G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor1T24Subject1_CNhs12932_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12721-135G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF297ZSX ENCSR000EBC Signal bigWig GM18951 POLR2A ENCSR000EBC signal 2 983 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/07779038-bf44-454b-8fb7-058c26731574/ENCFF297ZSX.bigWig\ color 254,75,173\ longLabel GM18951 POLR2A ENCSR000EBC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBC Signal\ track wgEncodeReg4TfChip_ENCFF297ZSX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF118ENX ENCSR053SGP Peak bigBed 5 Heart right ventricle tissue male adult 54 years ATAC peak 4 983 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/f82cb451-7046-4005-8660-7f3cf407d720/ENCFF118ENX.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR053SGP Peak\ track wgEncodeReg4Epigenetics_ENCFF118ENX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF321YQT ENCSR922XPO + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal 2 983 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/fb53b4e9-2b44-4d3b-ab80-618ec8e24607/ENCFF321YQT.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR922XPO + strand\ track wgEncodeReg4RnaSeq_ENCFF321YQT\ type bigWig\ visibility full\ encTfChipPkENCFF363UWP SK-N-SH YY1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in SK-N-SH from ENCODE 3 (ENCFF363UWP) 0 983 85 189 255 170 222 255 0 0 0 regulation 1 color 85,189,255\ longLabel Transcription Factor ChIP-seq Peaks of YY1 in SK-N-SH from ENCODE 3 (ENCFF363UWP)\ parent encTfChipPk off\ shortLabel SK-N-SH YY1\ subGroups cellType=SK-N-SH factor=YY1\ track encTfChipPkENCFF363UWP\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_fwd Tc:MdmToLps_24hrD2+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward 0 983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_fwd Tc:MdmToLps_24hrD2+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward 1 983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF726IBN ENCSR000EBG Peak bigBed 5 GM19099 POLR2A peaks 4 984 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b5e0c218-f265-4deb-9ee1-fcc09ab0a84e/ENCFF726IBN.bigBed\ labelFields none\ longLabel GM19099 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF726IBN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF288BEC ENCSR053SGP Signal bigWig Heart right ventricle tissue male adult 54 years ATAC signal 2 984 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/b264f8a9-8054-4f9e-aa78-dcfd6baf6a01/ENCFF288BEC.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR053SGP Signal\ track wgEncodeReg4Epigenetics_ENCFF288BEC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF180NNR ENCSR922XPO - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal 2 984 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/14/fad53a31-b294-4502-a195-8804d715dfae/ENCFF180NNR.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue male adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR922XPO - strand\ track wgEncodeReg4RnaSeq_ENCFF180NNR\ type bigWig\ visibility full\ encTfChipPkENCFF938CRS SU-DHL-6 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in SU-DHL-6 from ENCODE 3 (ENCFF938CRS) 0 984 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in SU-DHL-6 from ENCODE 3 (ENCFF938CRS)\ parent encTfChipPk off\ shortLabel SU-DHL-6 CTCF\ subGroups cellType=SU-DHL-6 factor=CTCF\ track encTfChipPkENCFF938CRS\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_rev Tc:MdmToLps_24hrD2- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse 0 984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_rev Tc:MdmToLps_24hrD2- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse 1 984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor2%20%28t24%20Subject2%29.CNhs13403.12819-136I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor2 (t24 Subject2)_CNhs13403_12819-136I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12819-136I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor2T24Subject2_CNhs13403_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12819-136I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF785QUL ENCSR000EBG Signal bigWig GM19099 POLR2A ENCSR000EBG signal 2 985 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ff088455-8eb1-48e1-9d93-10afff02108d/ENCFF785QUL.bigWig\ color 254,75,173\ longLabel GM19099 POLR2A ENCSR000EBG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBG Signal\ track wgEncodeReg4TfChip_ENCFF785QUL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF347HHX ENCSR053ZKP Peak bigBed 5 Adrenal gland tissue female adult 53 years DNase peak 4 985 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/93388836-682b-487f-8755-5e82911d4669/ENCFF347HHX.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR053ZKP Peak\ track wgEncodeReg4Epigenetics_ENCFF347HHX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF974VUT ENCSR924MSZ + strand bigWig Heart left ventricle tissue male adult (40 years) + strand total RNA-seq signal 2 985 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/000b69d1-ae8c-48bc-b823-18892e445422/ENCFF974VUT.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (40 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR924MSZ + strand\ track wgEncodeReg4RnaSeq_ENCFF974VUT\ type bigWig\ visibility full\ encTfChipPkENCFF433NIE T47D ESR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF433NIE) 0 985 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF433NIE)\ parent encTfChipPk off\ shortLabel T47D ESR1 1\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF433NIE\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_fwd Tc:MdmToLps_24hrD3+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward 0 985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_fwd Tc:MdmToLps_24hrD3+ bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward 1 985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF599VTO ENCSR000EBK Peak bigBed 5 GM19193 POLR2A peaks 4 986 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/796620fc-9092-402c-865a-6dd5182ef852/ENCFF599VTO.bigBed\ labelFields none\ longLabel GM19193 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF599VTO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF518SGA ENCSR053ZKP Signal bigWig Adrenal gland tissue female adult 53 years DNase signal 2 986 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/04fb10e7-54b7-44a8-ac41-85f6fbe520ef/ENCFF518SGA.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR053ZKP Signal\ track wgEncodeReg4Epigenetics_ENCFF518SGA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF661BLC ENCSR924MSZ - strand bigWig Heart left ventricle tissue male adult (40 years) - strand total RNA-seq signal 2 986 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/067f42f5-1b8d-428d-b8e4-20b403c07048/ENCFF661BLC.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (40 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR924MSZ - strand\ track wgEncodeReg4RnaSeq_ENCFF661BLC\ type bigWig\ visibility full\ encTfChipPkENCFF637WCT T47D ESR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF637WCT) 0 986 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF637WCT)\ parent encTfChipPk off\ shortLabel T47D ESR1 2\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF637WCT\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_rev Tc:MdmToLps_24hrD3- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse 0 986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_24hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_rev Tc:MdmToLps_24hrD3- bigWig Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse 1 986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2024hr%2c%20donor3%20%28t24%20Subject3%29.CNhs13334.12917-138B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 24hr, donor3 (t24 Subject3)_CNhs13334_12917-138B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12917-138B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_24hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS24hrDonor3T24Subject3_CNhs13334_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12917-138B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF068POE ENCSR000EBK Signal bigWig GM19193 POLR2A ENCSR000EBK signal 2 987 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/b1eabce3-076d-4a54-a696-2bd6890fe1a6/ENCFF068POE.bigWig\ color 254,75,173\ longLabel GM19193 POLR2A ENCSR000EBK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBK Signal\ track wgEncodeReg4TfChip_ENCFF068POE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF057UBN ENCSR054BKO Peak bigBed 5 Urinary bladder tissue male adult 34 years H3K27ac peak 4 987 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a5462ee5-0c51-4f0e-a6fc-3743a15b0312/ENCFF057UBN.bigBed\ color 181,145,0\ longLabel Urinary bladder tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR054BKO Peak\ track wgEncodeReg4Epigenetics_ENCFF057UBN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF921YKB ENCSR925DZW + strand bigWig Activated T-cell male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal 2 987 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/ddb237ef-ff94-45e9-baac-e3575e22bad6/ENCFF921YKB.bigWig\ color 254,75,173\ longLabel Activated T-cell male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR925DZW + strand\ track wgEncodeReg4RnaSeq_ENCFF921YKB\ type bigWig\ visibility full\ encTfChipPkENCFF396TFS T47D ESR1 3 narrowPeak Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF396TFS) 0 987 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ESR1 in T47D from ENCODE 3 (ENCFF396TFS)\ parent encTfChipPk off\ shortLabel T47D ESR1 3\ subGroups cellType=T47D factor=ESR1\ track encTfChipPkENCFF396TFS\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_fwd Tc:MdmToLps_36hrD1+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward 0 987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_fwd Tc:MdmToLps_36hrD1+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward 1 987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF042ZSL ENCSR000EBO Peak bigBed 5 H1 SIN3A peaks 4 988 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/489b9fc5-0ce9-4427-af17-4d84d4085eba/ENCFF042ZSL.bigBed\ labelFields none\ longLabel H1 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF042ZSL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF039NIU ENCSR054BKO Signal bigWig Urinary bladder tissue male adult 34 years H3K27ac signal 2 988 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/eef6b571-02ed-4d5e-a958-60bf871558ee/ENCFF039NIU.bigWig\ color 181,145,0\ longLabel Urinary bladder tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR054BKO Signal\ track wgEncodeReg4Epigenetics_ENCFF039NIU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF327NGT ENCSR925DZW - strand bigWig Activated T-cell male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal 2 988 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/ffc4b4d9-9374-479b-997f-8233f931d97e/ENCFF327NGT.bigWig\ color 254,75,173\ longLabel Activated T-cell male adult (43 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR925DZW - strand\ track wgEncodeReg4RnaSeq_ENCFF327NGT\ type bigWig\ visibility full\ encTfChipPkENCFF420MLJ T47D FOXA1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in T47D from ENCODE 3 (ENCFF420MLJ) 0 988 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in T47D from ENCODE 3 (ENCFF420MLJ)\ parent encTfChipPk off\ shortLabel T47D FOXA1\ subGroups cellType=T47D factor=FOXA1\ track encTfChipPkENCFF420MLJ\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_rev Tc:MdmToLps_36hrD1- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse 0 988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_rev Tc:MdmToLps_36hrD1- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse 1 988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor1%20%28t25%20Subject1%29.CNhs12933.12722-135G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor1 (t25 Subject1)_CNhs12933_12722-135G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12722-135G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor1T25Subject1_CNhs12933_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12722-135G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF744KFM ENCSR000EBO Signal bigWig H1 SIN3A ENCSR000EBO signal 2 989 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/7f8c77d7-4396-40ec-b966-e1939758357a/ENCFF744KFM.bigWig\ color 118,158,101\ longLabel H1 SIN3A ENCSR000EBO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBO Signal\ track wgEncodeReg4TfChip_ENCFF744KFM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF723PEK ENCSR055TVU Peak bigBed 5 Effector memory CD8-positive, alpha-beta T cell male adult 33 years H3K27ac peak 4 989 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/6ef76cbf-4600-45d1-a9b2-6b184c5977d2/ENCFF723PEK.bigBed\ color 181,145,0\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 33 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR055TVU Peak\ track wgEncodeReg4Epigenetics_ENCFF723PEK\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF150XAC ENCSR925GFP + strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 989 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/1ebb26be-ea54-4998-976f-f0d13bc9a273/ENCFF150XAC.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR925GFP + strand\ track wgEncodeReg4RnaSeq_ENCFF150XAC\ type bigWig\ visibility full\ encTfChipPkENCFF574HSR T47D GATA3 narrowPeak Transcription Factor ChIP-seq Peaks of GATA3 in T47D from ENCODE 3 (ENCFF574HSR) 0 989 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA3 in T47D from ENCODE 3 (ENCFF574HSR)\ parent encTfChipPk off\ shortLabel T47D GATA3\ subGroups cellType=T47D factor=GATA3\ track encTfChipPkENCFF574HSR\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_fwd Tc:MdmToLps_36hrD2+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward 0 989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_fwd Tc:MdmToLps_36hrD2+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward 1 989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF399TGL ENCSR000EBP Peak bigBed 5 H1 GTF2F1 peaks 4 990 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/6a61a9ba-0939-4979-abe8-8fa3541d3571/ENCFF399TGL.bigBed\ labelFields none\ longLabel H1 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF399TGL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF810PFO ENCSR055TVU Signal bigWig Effector memory CD8-positive, alpha-beta T cell male adult 33 years H3K27ac signal 2 990 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/23d23828-d1cf-45cb-95d9-69ef0fd11d7b/ENCFF810PFO.bigWig\ color 181,145,0\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 33 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR055TVU Signal\ track wgEncodeReg4Epigenetics_ENCFF810PFO\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF389ERJ ENCSR925GFP - strand bigWig Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 990 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/ca1f05fb-2089-464c-b3a1-f3c4aa94e349/ENCFF389ERJ.bigWig\ color 254,75,173\ longLabel Activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR925GFP - strand\ track wgEncodeReg4RnaSeq_ENCFF389ERJ\ type bigWig\ visibility full\ encTfChipPkENCFF946YUA T47D JUND narrowPeak Transcription Factor ChIP-seq Peaks of JUND in T47D from ENCODE 3 (ENCFF946YUA) 0 990 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in T47D from ENCODE 3 (ENCFF946YUA)\ parent encTfChipPk off\ shortLabel T47D JUND\ subGroups cellType=T47D factor=JUND\ track encTfChipPkENCFF946YUA\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_rev Tc:MdmToLps_36hrD2- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse 0 990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_rev Tc:MdmToLps_36hrD2- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse 1 990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor2%20%28t25%20Subject2%29.CNhs13404.12820-136I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor2 (t25 Subject2)_CNhs13404_12820-136I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12820-136I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor2T25Subject2_CNhs13404_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12820-136I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF160LPK ENCSR000EBP Signal bigWig H1 GTF2F1 ENCSR000EBP signal 2 991 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/f869b4e6-ad26-4578-b1b7-715a88b3b42d/ENCFF160LPK.bigWig\ color 118,158,101\ longLabel H1 GTF2F1 ENCSR000EBP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBP Signal\ track wgEncodeReg4TfChip_ENCFF160LPK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF659FVE ENCSR056PFI Peak bigBed 5 Pancreas tissue male adult 26 years DNase peak 4 991 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/a6f5b335-d238-4311-8ac9-81743612ddc3/ENCFF659FVE.bigBed\ color 6,218,147\ labelFields none\ longLabel Pancreas tissue male adult 26 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR056PFI Peak\ track wgEncodeReg4Epigenetics_ENCFF659FVE\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF992USK ENCSR927KSI + strand bigWig Natural killer cell male adult (33 years) + strand total RNA-seq signal 2 991 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/b54cafe2-49eb-407c-b464-6960a07ff569/ENCFF992USK.bigWig\ color 254,75,173\ longLabel Natural killer cell male adult (33 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR927KSI + strand\ track wgEncodeReg4RnaSeq_ENCFF992USK\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_fwd Tc:MdmToLps_36hrD3+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward 0 991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_fwd Tc:MdmToLps_36hrD3+ bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward 1 991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD3+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF078XBU VCaP CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in VCaP from ENCODE 3 (ENCFF078XBU) 0 991 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in VCaP from ENCODE 3 (ENCFF078XBU)\ parent encTfChipPk off\ shortLabel VCaP CTCF\ subGroups cellType=VCaP factor=CTCF\ track encTfChipPkENCFF078XBU\ wgEncodeReg4TfChip_ENCFF282VDB ENCSR000EBQ Peak bigBed 5 H1 BACH1 peaks 4 992 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/af7b1ec4-f96b-4b8e-b67d-caca0f22a9fd/ENCFF282VDB.bigBed\ labelFields none\ longLabel H1 BACH1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF282VDB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF771UVC ENCSR056PFI Signal bigWig Pancreas tissue male adult 26 years DNase signal 2 992 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/8b2e0520-bf7e-4b1d-a7bc-50060cca20d2/ENCFF771UVC.bigWig\ color 6,218,147\ longLabel Pancreas tissue male adult 26 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR056PFI Signal\ track wgEncodeReg4Epigenetics_ENCFF771UVC\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF835KTE ENCSR927KSI - strand bigWig Natural killer cell male adult (33 years) - strand total RNA-seq signal 2 992 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/07/09/b65d8b1a-eead-4d58-8156-873c35d6832f/ENCFF835KTE.bigWig\ color 254,75,173\ longLabel Natural killer cell male adult (33 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR927KSI - strand\ track wgEncodeReg4RnaSeq_ENCFF835KTE\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_rev Tc:MdmToLps_36hrD3- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse 0 992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_36hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_rev Tc:MdmToLps_36hrD3- bigWig Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse 1 992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2036hr%2c%20donor3%20%28t25%20Subject3%29.CNhs13335.12918-138B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 36hr, donor3 (t25 Subject3)_CNhs13335_12918-138B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12918-138B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_36hrD3-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS36hrDonor3T25Subject3_CNhs13335_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12918-138B2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF262ZOT WERI-Rb-1 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in WERI-Rb-1 from ENCODE 3 (ENCFF262ZOT) 0 992 211 85 255 233 170 255 0 0 0 regulation 1 color 211,85,255\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in WERI-Rb-1 from ENCODE 3 (ENCFF262ZOT)\ parent encTfChipPk off\ shortLabel WERI-Rb-1 CTCF\ subGroups cellType=WERI-Rb-1 factor=CTCF\ track encTfChipPkENCFF262ZOT\ wgEncodeReg4TfChip_ENCFF519TTD ENCSR000EBQ Signal bigWig H1 BACH1 ENCSR000EBQ signal 2 993 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/36c76099-8fbe-4306-b63c-038ee940025b/ENCFF519TTD.bigWig\ color 118,158,101\ longLabel H1 BACH1 ENCSR000EBQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBQ Signal\ track wgEncodeReg4TfChip_ENCFF519TTD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF803SGV ENCSR057GPV Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 993 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/bf722cc3-402f-49c9-becd-f401c20cfd1a/ENCFF803SGV.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR057GPV Peak\ track wgEncodeReg4Epigenetics_ENCFF803SGV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF503QTZ ENCSR931ATS + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal 2 993 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/09241a0e-1351-4166-9495-107b52211635/ENCFF503QTZ.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR931ATS + strand\ track wgEncodeReg4RnaSeq_ENCFF503QTZ\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_fwd Tc:MdmToLps_48hrD1+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward 0 993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_fwd Tc:MdmToLps_48hrD1+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward 1 993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD1+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF695MEK WI38 CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in WI38 from ENCODE 3 (ENCFF695MEK) 0 993 255 192 85 255 223 170 0 0 0 regulation 1 color 255,192,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in WI38 from ENCODE 3 (ENCFF695MEK)\ parent encTfChipPk off\ shortLabel WI38 CTCF\ subGroups cellType=WI38 factor=CTCF\ track encTfChipPkENCFF695MEK\ encTfChipPkENCFF730MQM 22Rv1 CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF730MQM) 0 994 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF730MQM)\ parent encTfChipPk off\ shortLabel 22Rv1 CTCF 1\ subGroups cellType=X22Rv1 factor=CTCF\ track encTfChipPkENCFF730MQM\ wgEncodeReg4TfChip_ENCFF963FZS ENCSR000EBR Peak bigBed 5 H1 MXI1 peaks 4 994 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/6e099757-7de9-439e-91a2-7a822f5c6209/ENCFF963FZS.bigBed\ labelFields none\ longLabel H1 MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF963FZS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF232XXP ENCSR057GPV Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 994 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/f969aea6-e5f0-47f0-8a9b-8441bec50406/ENCFF232XXP.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR057GPV Signal\ track wgEncodeReg4Epigenetics_ENCFF232XXP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF067VGO ENCSR931ATS - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal 2 994 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/6514406a-780a-431c-bafe-8fe507a62600/ENCFF067VGO.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR931ATS - strand\ track wgEncodeReg4RnaSeq_ENCFF067VGO\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_rev Tc:MdmToLps_48hrD1- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse 0 994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_rev Tc:MdmToLps_48hrD1- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse 1 994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor1%20%28t26%20Subject1%29.CNhs11942.12723-135G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor1 (t26 Subject1)_CNhs11942_12723-135G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12723-135G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD1-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor1T26Subject1_CNhs11942_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12723-135G5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF147YCW 22Rv1 CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF147YCW) 0 995 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in 22Rv1 from ENCODE 3 (ENCFF147YCW)\ parent encTfChipPk off\ shortLabel 22Rv1 CTCF 2\ subGroups cellType=X22Rv1 factor=CTCF\ track encTfChipPkENCFF147YCW\ wgEncodeReg4TfChip_ENCFF720NTH ENCSR000EBR Signal bigWig H1 MXI1 ENCSR000EBR signal 2 995 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/7b15619c-fd95-41c2-ae29-03422204fab5/ENCFF720NTH.bigWig\ color 118,158,101\ longLabel H1 MXI1 ENCSR000EBR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBR Signal\ track wgEncodeReg4TfChip_ENCFF720NTH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF225SPV ENCSR057RET Peak bigBed 5 Angular gyrus tissue female adult 75 years H3K4me3 peak 4 995 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/935e1c71-666a-4512-a61e-2aa84ed250fe/ENCFF225SPV.bigBed\ color 255,0,0\ longLabel Angular gyrus tissue female adult 75 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR057RET Peak\ track wgEncodeReg4Epigenetics_ENCFF225SPV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF850SIL ENCSR938LSP + strand bigWig GM23338 originated from GM23248 + strand total RNA-seq signal 2 995 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/02/1d8ca587-dbe9-4c1f-8005-e53f0ce773a1/ENCFF850SIL.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR938LSP + strand\ track wgEncodeReg4RnaSeq_ENCFF850SIL\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_fwd Tc:MdmToLps_48hrD2+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward 0 995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_fwd Tc:MdmToLps_48hrD2+ bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward 1 995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD2+\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=forward\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF447UZC 22Rv1 ZFX narrowPeak Transcription Factor ChIP-seq Peaks of ZFX in 22Rv1 from ENCODE 3 (ENCFF447UZC) 0 996 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZFX in 22Rv1 from ENCODE 3 (ENCFF447UZC)\ parent encTfChipPk off\ shortLabel 22Rv1 ZFX\ subGroups cellType=X22Rv1 factor=ZFX\ track encTfChipPkENCFF447UZC\ wgEncodeReg4TfChip_ENCFF854XWE ENCSR000EBS Peak bigBed 5 H1 MAFK peaks 4 996 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/de71e147-d697-4e7b-81d2-1bd128405464/ENCFF854XWE.bigBed\ labelFields none\ longLabel H1 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF854XWE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF081IBY ENCSR057RET Signal bigWig Angular gyrus tissue female adult 75 years H3K4me3 signal 2 996 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6f144091-d920-45e6-8f0c-e1f034e575b6/ENCFF081IBY.bigWig\ color 255,0,0\ longLabel Angular gyrus tissue female adult 75 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR057RET Signal\ track wgEncodeReg4Epigenetics_ENCFF081IBY\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF278MMI ENCSR938LSP - strand bigWig GM23338 originated from GM23248 - strand total RNA-seq signal 2 996 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/02/9ec4af14-86ca-498b-a2b8-5fef9b1b9bef/ENCFF278MMI.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR938LSP - strand\ track wgEncodeReg4RnaSeq_ENCFF278MMI\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_rev Tc:MdmToLps_48hrD2- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse 0 996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_48hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_rev Tc:MdmToLps_48hrD2- bigWig Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse 1 996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2048hr%2c%20donor2%20%28t26%20Subject2%29.CNhs13405.12821-136I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 48hr, donor2 (t26 Subject2)_CNhs13405_12821-136I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12821-136I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_48hrD2-\ subGroups sequenceTech=hCAGE category=Macrophage_response_to_LPS strand=reverse\ track MonocytederivedMacrophagesResponseToLPS48hrDonor2T26Subject2_CNhs13405_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12821-136I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF114FNT adrenlGlnd CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF114FNT) 0 997 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF114FNT)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 1\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF114FNT\ wgEncodeReg4TfChip_ENCFF045YJE ENCSR000EBS Signal bigWig H1 MAFK ENCSR000EBS signal 2 997 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/e446f130-f498-460b-a8ee-3388245794a1/ENCFF045YJE.bigWig\ color 118,158,101\ longLabel H1 MAFK ENCSR000EBS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBS Signal\ track wgEncodeReg4TfChip_ENCFF045YJE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF728QMM ENCSR058ELM Peak bigBed 5 T-helper 1 cell male adult 30 years DNase peak 4 997 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e25a4898-c6ec-47b0-8104-3457e8d1a865/ENCFF728QMM.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR058ELM Peak\ track wgEncodeReg4Epigenetics_ENCFF728QMM\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF413WXI ENCSR942YMN + strand bigWig Placenta tissue male embryo + strand total RNA-seq signal 2 997 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/52f18356-1727-4c60-8047-f58f0e71c0f1/ENCFF413WXI.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR942YMN + strand\ track wgEncodeReg4RnaSeq_ENCFF413WXI\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward 0 997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward 1 997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF174CEI adrenlGlnd CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF174CEI) 0 998 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF174CEI)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 2\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF174CEI\ wgEncodeReg4TfChip_ENCFF991MKH ENCSR000EBT Peak bigBed 5 H1 CHD2 peaks 4 998 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/7887d5a5-a986-41b4-981c-9488d0dbdb07/ENCFF991MKH.bigBed\ labelFields none\ longLabel H1 CHD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF991MKH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF771ULB ENCSR058ELM Signal bigWig T-helper 1 cell male adult 30 years DNase signal 2 998 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/453afd15-b39d-4352-9f6c-c321757ce65a/ENCFF771ULB.bigWig\ color 6,218,147\ longLabel T-helper 1 cell male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR058ELM Signal\ track wgEncodeReg4Epigenetics_ENCFF771ULB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF933SBA ENCSR942YMN - strand bigWig Placenta tissue male embryo - strand total RNA-seq signal 2 998 104 171 71 179 213 163 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/05/5dc40c2d-a5b6-4056-814f-cf14bc1f0031/ENCFF933SBA.bigWig\ color 104,171,71\ longLabel Placenta tissue male embryo - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR942YMN - strand\ track wgEncodeReg4RnaSeq_ENCFF933SBA\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward 0 998 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_fwd MyoblastToMyotubes_Day00D1+ bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward 1 998 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF574FIL adrenlGlnd CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF574FIL) 0 999 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF574FIL)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 3\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF574FIL\ wgEncodeReg4TfChip_ENCFF495IUE ENCSR000EBT Signal bigWig H1 CHD2 ENCSR000EBT signal 2 999 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/ff2d393a-2061-482d-89f2-bc2805c652e8/ENCFF495IUE.bigWig\ color 118,158,101\ longLabel H1 CHD2 ENCSR000EBT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBT Signal\ track wgEncodeReg4TfChip_ENCFF495IUE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF086EOS ENCSR058VBM Peak bigBed 5 Upper lobe of left lung tissue male adult 37 years DNase peak 4 999 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/24ba9f55-1cbd-4d76-bc22-971b63802e84/ENCFF086EOS.bigBed\ color 6,218,147\ labelFields none\ longLabel Upper lobe of left lung tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR058VBM Peak\ track wgEncodeReg4Epigenetics_ENCFF086EOS\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF526ILL ENCSR944OIX + strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 999 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/2a1e1709-ceaa-4a2d-b249-6e8dfa35cf69/ENCFF526ILL.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR944OIX + strand\ track wgEncodeReg4RnaSeq_ENCFF526ILL\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse 0 999 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse 1 999 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14586.13496-145C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor1_CNhs14586_13496-145C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13496-145C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor1_CNhs14586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13496-145C4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF412TMX adrenlGlnd CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF412TMX) 0 1000 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in adrenal_gland from ENCODE 3 (ENCFF412TMX)\ parent encTfChipPk off\ shortLabel adrenlGlnd CTCF 4\ subGroups cellType=adrenal_gland factor=CTCF\ track encTfChipPkENCFF412TMX\ wgEncodeReg4TfChip_ENCFF128BID ENCSR000EBU Peak bigBed 5 H1 CHD1 peaks 4 1000 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/6223ccdb-d999-468d-83f4-0000cfc6f57e/ENCFF128BID.bigBed\ labelFields none\ longLabel H1 CHD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF128BID\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF674RXU ENCSR058VBM Signal bigWig Upper lobe of left lung tissue male adult 37 years DNase signal 2 1000 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/521fafe1-4e48-40b2-ab1b-548bef72fd86/ENCFF674RXU.bigWig\ color 6,218,147\ longLabel Upper lobe of left lung tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR058VBM Signal\ track wgEncodeReg4Epigenetics_ENCFF674RXU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF506NXV ENCSR944OIX - strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 1000 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/3afacece-f79c-4ae7-8757-ec9f2ba0f0e4/ENCFF506NXV.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR944OIX - strand\ track wgEncodeReg4RnaSeq_ENCFF506NXV\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse 0 1000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_rev MyoblastToMyotubes_Day00D1- bigWig Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse 1 1000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor1.CNhs13847.13469-144I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor1_CNhs13847_13469-144I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13469-144I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor1_CNhs13847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13469-144I4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF363GNR adrnlGld POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF363GNR) 0 1001 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF363GNR)\ parent encTfChipPk off\ shortLabel adrnlGld POLR2A 1\ subGroups cellType=adrenal_gland factor=POLR2A\ track encTfChipPkENCFF363GNR\ wgEncodeReg4TfChip_ENCFF119KAM ENCSR000EBU Signal bigWig H1 CHD1 ENCSR000EBU signal 2 1001 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/8df5a773-6762-4186-99ab-1b2ea5794568/ENCFF119KAM.bigWig\ color 118,158,101\ longLabel H1 CHD1 ENCSR000EBU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBU Signal\ track wgEncodeReg4TfChip_ENCFF119KAM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF114GFZ ENCSR059BAR Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak 4 1001 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/cd6f6e09-86c0-4db0-8b00-b55c00fabbc9/ENCFF114GFZ.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059BAR Peak\ track wgEncodeReg4Epigenetics_ENCFF114GFZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF096ZIS ENCSR944UJZ + strand bigWig Dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal 2 1001 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/27/02e53e84-8bca-4e87-9683-7375bd600d2d/ENCFF096ZIS.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (87 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR944UJZ + strand\ track wgEncodeReg4RnaSeq_ENCFF096ZIS\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward 0 1001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward 1 1001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF967EOL adrnlGld POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF967EOL) 0 1002 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in adrenal_gland from ENCODE 3 (ENCFF967EOL)\ parent encTfChipPk off\ shortLabel adrnlGld POLR2A 2\ subGroups cellType=adrenal_gland factor=POLR2A\ track encTfChipPkENCFF967EOL\ wgEncodeReg4TfChip_ENCFF871PTR ENCSR000EBV Peak bigBed 5 H1 CEBPB peaks 4 1002 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/96a985d7-06e1-4932-9d61-94115a2d8948/ENCFF871PTR.bigBed\ labelFields none\ longLabel H1 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF871PTR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF240XXE ENCSR059BAR Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal 2 1002 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/b0e51c8a-741e-4239-8b06-34d9a2c86048/ENCFF240XXE.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059BAR Signal\ track wgEncodeReg4Epigenetics_ENCFF240XXE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF431ABS ENCSR944UJZ - strand bigWig Dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal 2 1002 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/11/27/ce8b270b-439b-40c6-af0f-99a3b3576f37/ENCFF431ABS.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (87 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR944UJZ - strand\ track wgEncodeReg4RnaSeq_ENCFF431ABS\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward 0 1002 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_fwd MyoblastToMyotubes_Day00D2+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward 1 1002 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF374MIO ascendAorta CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ascending_aorta from ENCODE 3 (ENCFF374MIO) 0 1003 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ascending_aorta from ENCODE 3 (ENCFF374MIO)\ parent encTfChipPk off\ shortLabel ascendAorta CTCF\ subGroups cellType=ascending_aorta factor=CTCF\ track encTfChipPkENCFF374MIO\ wgEncodeReg4TfChip_ENCFF906RLR ENCSR000EBV Signal bigWig H1 CEBPB ENCSR000EBV signal 2 1003 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/b78cb29c-d4a6-4189-b619-c63846d9f723/ENCFF906RLR.bigWig\ color 118,158,101\ longLabel H1 CEBPB ENCSR000EBV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBV Signal\ track wgEncodeReg4TfChip_ENCFF906RLR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF609FQX ENCSR059ETS Peak bigBed 5 Posterior cingulate gyrus tissue female adult 85 years DNase peak 4 1003 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/7af3a46d-412f-4c48-a62e-85ac8f1a438e/ENCFF609FQX.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 85 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059ETS Peak\ track wgEncodeReg4Epigenetics_ENCFF609FQX\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF877GJY ENCSR945VLG + strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A + strand total RNA-seq signal 2 1003 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/4b57fe9e-80e2-48b5-9cf3-b9c43c780f90/ENCFF877GJY.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR945VLG + strand\ track wgEncodeReg4RnaSeq_ENCFF877GJY\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse 0 1003 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse 1 1003 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF148BSH astrocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte from ENCODE 3 (ENCFF148BSH) 0 1004 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte from ENCODE 3 (ENCFF148BSH)\ parent encTfChipPk off\ shortLabel astrocyte CTCF\ subGroups cellType=astrocyte factor=CTCF\ track encTfChipPkENCFF148BSH\ wgEncodeReg4TfChip_ENCFF288NOI ENCSR000EBX Peak bigBed 5 H1 BRCA1 peaks 4 1004 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/a06a101a-8c40-4f46-a6aa-900a55aa8060/ENCFF288NOI.bigBed\ labelFields none\ longLabel H1 BRCA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF288NOI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF900YTP ENCSR059ETS Signal bigWig Posterior cingulate gyrus tissue female adult 85 years DNase signal 2 1004 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/5c4dbbe2-f270-4b0e-8cd2-45b35f021573/ENCFF900YTP.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 85 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059ETS Signal\ track wgEncodeReg4Epigenetics_ENCFF900YTP\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF679QEM ENCSR945VLG - strand bigWig HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A - strand total RNA-seq signal 2 1004 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/12/06/05439d4e-f254-4daa-90c3-be58515cc3b2/ENCFF679QEM.bigWig\ color 86,86,36\ longLabel HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens POLR2A - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR945VLG - strand\ track wgEncodeReg4RnaSeq_ENCFF679QEM\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse 0 1004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor2.CNhs14567.13478-145A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor2_CNhs14567_13478-145A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13478-145A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor2_CNhs14567_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13478-145A4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_rev MyoblastToMyotubes_Day00D2- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse 1 1004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14596.13505-145D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor2_CNhs14596_13505-145D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13505-145D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor2_CNhs14596_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13505-145D4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF515KNI cerebAstrcyt CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_cerebellum from ENCODE 3 (ENCFF515KNI) 0 1005 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_cerebellum from ENCODE 3 (ENCFF515KNI)\ parent encTfChipPk off\ shortLabel cerebAstrcyt CTCF\ subGroups cellType=astrocyte_of_the_cerebellum factor=CTCF\ track encTfChipPkENCFF515KNI\ wgEncodeReg4TfChip_ENCFF786TPQ ENCSR000EBX Signal bigWig H1 BRCA1 ENCSR000EBX signal 2 1005 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/1c8a52fb-0deb-4c9c-b2da-07809d4cd48e/ENCFF786TPQ.bigWig\ color 118,158,101\ longLabel H1 BRCA1 ENCSR000EBX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBX Signal\ track wgEncodeReg4TfChip_ENCFF786TPQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF631JNO ENCSR059KXR Peak bigBed 5 Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF peak 4 1005 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/4ba8c0c7-34fc-42ac-a93a-a43af105c0d4/ENCFF631JNO.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059KXR Peak\ track wgEncodeReg4Epigenetics_ENCFF631JNO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF568QQJ ENCSR949UTT + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years) + strand total RNA-seq signal 2 1005 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/b04c41fc-4e91-4848-a53a-ef17e6e675ed/ENCFF568QQJ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR949UTT + strand\ track wgEncodeReg4RnaSeq_ENCFF568QQJ\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward 0 1005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward 1 1005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF794ZJT ENCSR000EBY Peak bigBed 5 H1 MYC peaks 4 1006 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/3e7fe788-5e33-46cb-ae7b-8ccc4c2a03a9/ENCFF794ZJT.bigBed\ labelFields none\ longLabel H1 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF794ZJT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF937OHJ ENCSR059KXR Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF signal 2 1006 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/f2b2d0fd-e875-49d2-8760-ecb8adfb7961/ENCFF937OHJ.bigWig\ color 0,176,240\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059KXR Signal\ track wgEncodeReg4Epigenetics_ENCFF937OHJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF410FVM ENCSR949UTT - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years) - strand total RNA-seq signal 2 1006 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/09/28a39938-066b-4dad-a997-827dd633e181/ENCFF410FVM.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (83 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR949UTT - strand\ track wgEncodeReg4RnaSeq_ENCFF410FVM\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward 0 1006 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_fwd MyoblastToMyotubes_Day00D3+ bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward 1 1006 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF600CYD spinlAstrcyt CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_spinal_cord from ENCODE 3 (ENCFF600CYD) 0 1006 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in astrocyte_of_the_spinal_cord from ENCODE 3 (ENCFF600CYD)\ parent encTfChipPk off\ shortLabel spinlAstrcyt CTCF\ subGroups cellType=astrocyte_of_the_spinal_cord factor=CTCF\ track encTfChipPkENCFF600CYD\ encTfChipPkENCFF904CNB biplNeuron CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF904CNB) 0 1007 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF904CNB)\ parent encTfChipPk off\ shortLabel biplNeuron CTCF 1\ subGroups cellType=bipolar_neuron factor=CTCF\ track encTfChipPkENCFF904CNB\ wgEncodeReg4TfChip_ENCFF145JGY ENCSR000EBY Signal bigWig H1 MYC ENCSR000EBY signal 2 1007 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/a2a286a5-7e12-4e08-8322-fe264e6f13e4/ENCFF145JGY.bigWig\ color 118,158,101\ longLabel H1 MYC ENCSR000EBY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBY Signal\ track wgEncodeReg4TfChip_ENCFF145JGY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF927ROL ENCSR059LXL Peak bigBed 5 Muscle of leg tissue male embryo 96 days DNase peak 4 1007 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/9936094e-f688-438f-b58c-192005457c7c/ENCFF927ROL.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue male embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059LXL Peak\ track wgEncodeReg4Epigenetics_ENCFF927ROL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF085ISO ENCSR951DTJ + strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 1007 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/13f1c593-bacd-4ccf-a940-cdcf0d8c02f4/ENCFF085ISO.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR951DTJ + strand\ track wgEncodeReg4RnaSeq_ENCFF085ISO\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse 0 1007 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse 1 1007 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20control%20donor3.CNhs14577.13487-145B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, control donor3_CNhs14577_13487-145B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13487-145B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00ControlDonor3_CNhs14577_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13487-145B4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF203ZIS biplNeuron CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF203ZIS) 0 1008 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in bipolar_neuron from ENCODE 3 (ENCFF203ZIS)\ parent encTfChipPk off\ shortLabel biplNeuron CTCF 2\ subGroups cellType=bipolar_neuron factor=CTCF\ track encTfChipPkENCFF203ZIS\ wgEncodeReg4TfChip_ENCFF010YXS ENCSR000EBZ Peak bigBed 5 H1 JUND peaks 4 1008 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/0aa08b4c-4e16-44aa-84a0-42942af9abe9/ENCFF010YXS.bigBed\ labelFields none\ longLabel H1 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EBZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF010YXS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF639FLQ ENCSR059LXL Signal bigWig Muscle of leg tissue male embryo 96 days DNase signal 2 1008 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/a0453bdf-5e6f-49af-99cc-46363bc5f0fa/ENCFF639FLQ.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059LXL Signal\ track wgEncodeReg4Epigenetics_ENCFF639FLQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF759EQT ENCSR951DTJ - strand bigWig Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 1008 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/5395fadd-ce36-4775-ab84-3102550a968e/ENCFF759EQT.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR951DTJ - strand\ track wgEncodeReg4RnaSeq_ENCFF759EQT\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse 0 1008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_rev MyoblastToMyotubes_Day00D3- bigWig Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse 1 1008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day00%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14605.13514-145E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day00, Duchenne Muscular Dystrophy donor3_CNhs14605_13514-145E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13514-145E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day00D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay00DuchenneMuscularDystrophyDonor3_CNhs14605_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13514-145E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF482JUI bipNeuron SMARCA4 narrowPeak Transcription Factor ChIP-seq Peaks of SMARCA4 in bipolar_neuron from ENCODE 3 (ENCFF482JUI) 0 1009 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMARCA4 in bipolar_neuron from ENCODE 3 (ENCFF482JUI)\ parent encTfChipPk off\ shortLabel bipNeuron SMARCA4\ subGroups cellType=bipolar_neuron factor=SMARCA4\ track encTfChipPkENCFF482JUI\ wgEncodeReg4TfChip_ENCFF859IIO ENCSR000ECB Peak bigBed 5 H1 TBP peaks 4 1009 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a4a962ad-54af-405b-966d-48562811ba2f/ENCFF859IIO.bigBed\ labelFields none\ longLabel H1 TBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF859IIO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF462YSN ENCSR059MVB Peak bigBed 5 ACC112 H3K27ac peak 4 1009 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/df5364c1-3267-4165-9cac-c2d10a3a6361/ENCFF462YSN.bigBed\ color 181,145,0\ longLabel ACC112 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059MVB Peak\ track wgEncodeReg4Epigenetics_ENCFF462YSN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF496YJK ENCSR954PZB + strand bigWig Adrenal gland tissue male adult (54 years) + strand total RNA-seq signal 2 1009 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/96d3ea47-a676-46be-95d5-42e3bb1d06f4/ENCFF496YJK.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR954PZB + strand\ track wgEncodeReg4RnaSeq_ENCFF496YJK\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward 0 1009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward 1 1009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF984VPB biplNeuron ZEB1 narrowPeak Transcription Factor ChIP-seq Peaks of ZEB1 in bipolar_neuron from ENCODE 3 (ENCFF984VPB) 0 1010 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZEB1 in bipolar_neuron from ENCODE 3 (ENCFF984VPB)\ parent encTfChipPk off\ shortLabel biplNeuron ZEB1\ subGroups cellType=bipolar_neuron factor=ZEB1\ track encTfChipPkENCFF984VPB\ wgEncodeReg4TfChip_ENCFF206PWF ENCSR000ECB Signal bigWig H1 TBP ENCSR000ECB signal 2 1010 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a469e9e6-93bd-47ad-937e-b181b4d08ed5/ENCFF206PWF.bigWig\ color 118,158,101\ longLabel H1 TBP ENCSR000ECB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECB Signal\ track wgEncodeReg4TfChip_ENCFF206PWF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF527UAI ENCSR059MVB Signal bigWig ACC112 H3K27ac signal 2 1010 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/0c427ae7-92cc-48eb-b51f-67bd0085369c/ENCFF527UAI.bigWig\ color 181,145,0\ longLabel ACC112 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059MVB Signal\ track wgEncodeReg4Epigenetics_ENCFF527UAI\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF488CDU ENCSR954PZB - strand bigWig Adrenal gland tissue male adult (54 years) - strand total RNA-seq signal 2 1010 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/ed73f7de-1fcc-4ad5-a1eb-a5718acd73e6/ENCFF488CDU.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR954PZB - strand\ track wgEncodeReg4RnaSeq_ENCFF488CDU\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward 0 1010 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_fwd MyoblastToMyotubes_Day01D1+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward 1 1010 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF582PEJ ENCSR000ECC Peak bigBed 5 H1 NRF1 peaks 4 1011 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/577f59e4-784b-49ab-b0af-e08b9971f621/ENCFF582PEJ.bigBed\ labelFields none\ longLabel H1 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF582PEJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF569LUF ENCSR059NIN Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years DNase peak 4 1011 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/7341f55a-ace0-41e8-b61d-a3d8ff87e4a9/ENCFF569LUF.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059NIN Peak\ track wgEncodeReg4Epigenetics_ENCFF569LUF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF095UOA ENCSR956ZVR + strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) + strand total RNA-seq signal 2 1011 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/9705cffa-5214-4dea-a3a6-d90d2e4b0342/ENCFF095UOA.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR956ZVR + strand\ track wgEncodeReg4RnaSeq_ENCFF095UOA\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse 0 1011 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse 1 1011 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor1.CNhs13848.13470-144I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor1_CNhs13848_13470-144I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13470-144I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor1_CNhs13848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13470-144I5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF872XQU pancreas CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF872XQU) 0 1011 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF872XQU)\ parent encTfChipPk off\ shortLabel pancreas CTCF 1\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF872XQU\ wgEncodeReg4TfChip_ENCFF747YJU ENCSR000ECC Signal bigWig H1 NRF1 ENCSR000ECC signal 2 1012 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/1e27dfbc-4b33-4f3e-891c-53f25b50be07/ENCFF747YJU.bigWig\ color 118,158,101\ longLabel H1 NRF1 ENCSR000ECC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECC Signal\ track wgEncodeReg4TfChip_ENCFF747YJU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF397SMJ ENCSR059NIN Signal bigWig Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years DNase signal 2 1012 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/6066a476-6893-439b-9edb-69b890f17c4e/ENCFF397SMJ.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR059NIN Signal\ track wgEncodeReg4Epigenetics_ENCFF397SMJ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF873GBQ ENCSR956ZVR - strand bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) - strand total RNA-seq signal 2 1012 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/22b810c1-c2a5-43ac-9d35-e75321d8ce9d/ENCFF873GBQ.bigWig\ color 254,75,173\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult (43 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR956ZVR - strand\ track wgEncodeReg4RnaSeq_ENCFF873GBQ\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse 0 1012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_rev MyoblastToMyotubes_Day01D1- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse 1 1012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14587.13497-145C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor1_CNhs14587_13497-145C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13497-145C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor1_CNhs14587_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13497-145C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF610UCL pancreas CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF610UCL) 0 1012 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF610UCL)\ parent encTfChipPk off\ shortLabel pancreas CTCF 2\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF610UCL\ wgEncodeReg4TfChip_ENCFF434EDF ENCSR000ECD Peak bigBed 5 H1 USF2 peaks 4 1013 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/21ed0a8b-bd8e-4720-bc7b-f45db206ad84/ENCFF434EDF.bigBed\ labelFields none\ longLabel H1 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF434EDF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF594EOB ENCSR060BFU Peak bigBed 5 Adrenal gland tissue embryo 96 days DNase peak 4 1013 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/6b540979-f3ce-4720-ba4f-22daf061774d/ENCFF594EOB.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060BFU Peak\ track wgEncodeReg4Epigenetics_ENCFF594EOB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF995SOX ENCSR957WSE + strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal 2 1013 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/7ad8f4d9-18d9-485a-964e-98ba4166143e/ENCFF995SOX.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR957WSE + strand\ track wgEncodeReg4RnaSeq_ENCFF995SOX\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward 0 1013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward 1 1013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF153EBU pancreas CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF153EBU) 0 1013 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF153EBU)\ parent encTfChipPk off\ shortLabel pancreas CTCF 3\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF153EBU\ wgEncodeReg4TfChip_ENCFF390ECL ENCSR000ECD Signal bigWig H1 USF2 ENCSR000ECD signal 2 1014 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/4fc9605e-35f5-451e-bb6c-1e912b64d4f2/ENCFF390ECL.bigWig\ color 118,158,101\ longLabel H1 USF2 ENCSR000ECD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECD Signal\ track wgEncodeReg4TfChip_ENCFF390ECL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF098BSH ENCSR060BFU Signal bigWig Adrenal gland tissue embryo 96 days DNase signal 2 1014 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/e63f91c2-ec90-4264-a69e-6bfaf8fa78e4/ENCFF098BSH.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060BFU Signal\ track wgEncodeReg4Epigenetics_ENCFF098BSH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF185LZQ ENCSR957WSE - strand bigWig Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal 2 1014 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/f7f9f502-be59-44cd-93e5-c06a93d5b170/ENCFF185LZQ.bigWig\ color 254,75,173\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult (30 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR957WSE - strand\ track wgEncodeReg4RnaSeq_ENCFF185LZQ\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse 0 1014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse 1 1014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14597.13506-145D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor2_CNhs14597_13506-145D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13506-145D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor2_CNhs14597_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13506-145D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF900GKE pancreas CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF900GKE) 0 1014 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in body_of_pancreas from ENCODE 3 (ENCFF900GKE)\ parent encTfChipPk off\ shortLabel pancreas CTCF 4\ subGroups cellType=body_of_pancreas factor=CTCF\ track encTfChipPkENCFF900GKE\ wgEncodeReg4TfChip_ENCFF967OJF ENCSR000ECE Peak bigBed 5 H1 RAD21 peaks 4 1015 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4fb64201-20e8-4db0-ab4c-cddb8c2503ca/ENCFF967OJF.bigBed\ labelFields none\ longLabel H1 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF967OJF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF377GUL ENCSR060HPL Peak bigBed 5 Coronary artery tissue female adult 53 years DNase peak 4 1015 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/f601bf2b-7624-4951-b7c2-a38c81ec73cc/ENCFF377GUL.bigBed\ color 6,218,147\ labelFields none\ longLabel Coronary artery tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060HPL Peak\ track wgEncodeReg4Epigenetics_ENCFF377GUL\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF221SGO ENCSR959ENR + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal 2 1015 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/66e1d0c4-5c37-4130-bd90-c4cb68ff24b4/ENCFF221SGO.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR959ENR + strand\ track wgEncodeReg4RnaSeq_ENCFF221SGO\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward 0 1015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward 1 1015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF389ULP pancreas POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF389ULP) 0 1015 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF389ULP)\ parent encTfChipPk on\ shortLabel pancreas POLR2A 1\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF389ULP\ wgEncodeReg4TfChip_ENCFF002NBT ENCSR000ECE Signal bigWig H1 RAD21 ENCSR000ECE signal 2 1016 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/45dc9bc3-4168-46f8-8b4b-a10ccd4b9985/ENCFF002NBT.bigWig\ color 118,158,101\ longLabel H1 RAD21 ENCSR000ECE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECE Signal\ track wgEncodeReg4TfChip_ENCFF002NBT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF383WYK ENCSR060HPL Signal bigWig Coronary artery tissue female adult 53 years DNase signal 2 1016 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/a6cff29c-2c4c-481c-95c8-69ff726dc622/ENCFF383WYK.bigWig\ color 6,218,147\ longLabel Coronary artery tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060HPL Signal\ track wgEncodeReg4Epigenetics_ENCFF383WYK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF550DNX ENCSR959ENR - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal 2 1016 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/04/3682dca8-0525-45d5-83ce-910e863d6bdb/ENCFF550DNX.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR959ENR - strand\ track wgEncodeReg4RnaSeq_ENCFF550DNX\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward 0 1016 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_fwd MyoblastToMyotubes_Day01D3+ bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward 1 1016 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF306CZZ pancreas POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF306CZZ) 0 1016 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF306CZZ)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 2\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF306CZZ\ wgEncodeReg4TfChip_ENCFF605EGG ENCSR000ECF Peak bigBed 5 H1 RFX5 peaks 4 1017 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ffb233be-e057-4336-9d9b-625d7bde6c1e/ENCFF605EGG.bigBed\ labelFields none\ longLabel H1 RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF605EGG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF944QAD ENCSR060MAU Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 1017 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/06e934e8-72c2-4852-8111-f7b7ba06dc01/ENCFF944QAD.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060MAU Peak\ track wgEncodeReg4Epigenetics_ENCFF944QAD\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF553NXV ENCSR964JRR + strand bigWig Activated T-helper 17 cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal 2 1017 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/8290d82d-ac52-4858-9dab-0ecb5565f5b5/ENCFF553NXV.bigWig\ color 254,75,173\ longLabel Activated T-helper 17 cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR964JRR + strand\ track wgEncodeReg4RnaSeq_ENCFF553NXV\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse 0 1017 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse 1 1017 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF296AFJ pancreas POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF296AFJ) 0 1017 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF296AFJ)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 3\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF296AFJ\ wgEncodeReg4TfChip_ENCFF557TMO ENCSR000ECF Signal bigWig H1 RFX5 ENCSR000ECF signal 2 1018 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/02124f3f-2336-4459-bd2c-daf94d419bd8/ENCFF557TMO.bigWig\ color 118,158,101\ longLabel H1 RFX5 ENCSR000ECF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECF Signal\ track wgEncodeReg4TfChip_ENCFF557TMO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF499ALA ENCSR060MAU Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 1018 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/51ea3f39-862e-4873-9e1f-733b5a9584a8/ENCFF499ALA.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060MAU Signal\ track wgEncodeReg4Epigenetics_ENCFF499ALA\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF577IJV ENCSR964JRR - strand bigWig Activated T-helper 17 cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal 2 1018 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/730e3668-0311-470a-bde9-5acf725bb21e/ENCFF577IJV.bigWig\ color 254,75,173\ longLabel Activated T-helper 17 cell male adult (50 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR964JRR - strand\ track wgEncodeReg4RnaSeq_ENCFF577IJV\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse 0 1018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14606.13515-145E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, Duchenne Muscular Dystrophy donor3_CNhs14606_13515-145E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13515-145E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01DuchenneMuscularDystrophyDonor3_CNhs14606_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13515-145E5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_rev MyoblastToMyotubes_Day01D3- bigWig Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse 1 1018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor3.CNhs14578.13488-145B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor3_CNhs14578_13488-145B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13488-145B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor3_CNhs14578_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13488-145B5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF371GSC pancreas POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF371GSC) 0 1018 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in body_of_pancreas from ENCODE 3 (ENCFF371GSC)\ parent encTfChipPk off\ shortLabel pancreas POLR2A 4\ subGroups cellType=body_of_pancreas factor=POLR2A\ track encTfChipPkENCFF371GSC\ encTfChipPkENCFF427RYJ brainMicEndo CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in brain_microvascular_endothelial_cell from ENCODE 3 (ENCFF427RYJ) 0 1019 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in brain_microvascular_endothelial_cell from ENCODE 3 (ENCFF427RYJ)\ parent encTfChipPk off\ shortLabel brainMicEndo CTCF\ subGroups cellType=brain_microvascular_endothelial_cell factor=CTCF\ track encTfChipPkENCFF427RYJ\ wgEncodeReg4TfChip_ENCFF159VGJ ENCSR000ECH Peak bigBed 5 HeLa-S3 HCFC1 peaks 4 1019 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/6ba6f373-0788-48d3-9a6b-a42172dc5f4d/ENCFF159VGJ.bigBed\ labelFields none\ longLabel HeLa-S3 HCFC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF159VGJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF642RSJ ENCSR060MJY Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak 4 1019 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b51ee913-b3da-4f47-85c5-5ce3141c95b3/ENCFF642RSJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060MJY Peak\ track wgEncodeReg4Epigenetics_ENCFF642RSJ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF736DOX ENCSR965OKL + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (78 years) + strand total RNA-seq signal 2 1019 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/db122b37-5bad-41a5-9196-a959eb31f4c0/ENCFF736DOX.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (78 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR965OKL + strand\ track wgEncodeReg4RnaSeq_ENCFF736DOX\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward 0 1019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward 1 1019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF338TGS breastEpi CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF338TGS) 0 1020 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF338TGS)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 1\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF338TGS\ wgEncodeReg4TfChip_ENCFF217UZI ENCSR000ECH Signal bigWig HeLa-S3 HCFC1 ENCSR000ECH signal 2 1020 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/9b9adbb5-627a-47c8-9e02-352611330b8c/ENCFF217UZI.bigWig\ color 186,111,165\ longLabel HeLa-S3 HCFC1 ENCSR000ECH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECH Signal\ track wgEncodeReg4TfChip_ENCFF217UZI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF592RWK ENCSR060MJY Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 1020 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/07635a31-8351-4ea1-91d7-a6c61beb5ab0/ENCFF592RWK.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060MJY Signal\ track wgEncodeReg4Epigenetics_ENCFF592RWK\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF676BNC ENCSR965OKL - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (78 years) - strand total RNA-seq signal 2 1020 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/b6b3f659-39a1-4b5b-9081-330bd7beecc4/ENCFF676BNC.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (78 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR965OKL - strand\ track wgEncodeReg4RnaSeq_ENCFF676BNC\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward 0 1020 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_fwd MyoblastToMyotubes_Day02D1+ bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward 1 1020 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF167SCX breastEpi CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF167SCX) 0 1021 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF167SCX)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 2\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF167SCX\ wgEncodeReg4TfChip_ENCFF608AEL ENCSR000ECI Peak bigBed 5 HeLa-S3 ELK1 peaks 4 1021 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/af2307ae-3f5b-4f5d-9f67-5a3f6103e30d/ENCFF608AEL.bigBed\ labelFields none\ longLabel HeLa-S3 ELK1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF608AEL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF334EBB ENCSR060TTR Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase peak 4 1021 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/6a9f3dc6-da83-4de3-95a0-7f57f4f4f9df/ENCFF334EBB.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060TTR Peak\ track wgEncodeReg4Epigenetics_ENCFF334EBB\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF497QCQ ENCSR967JPI + strand bigWig Gastrocnemius medialis tissue male adult (54 years) + strand total RNA-seq signal 2 1021 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/8afbaf5c-4715-45f6-8dcb-1f8d8edcce75/ENCFF497QCQ.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue male adult (54 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR967JPI + strand\ track wgEncodeReg4RnaSeq_ENCFF497QCQ\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse 0 1021 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse 1 1021 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14588.13498-145C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor1_CNhs14588_13498-145C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13498-145C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor1_CNhs14588_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13498-145C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF113XGW breastEpi CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF113XGW) 0 1022 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in breast_epithelium from ENCODE 3 (ENCFF113XGW)\ parent encTfChipPk off\ shortLabel breastEpi CTCF 3\ subGroups cellType=breast_epithelium factor=CTCF\ track encTfChipPkENCFF113XGW\ wgEncodeReg4TfChip_ENCFF638BKZ ENCSR000ECI Signal bigWig HeLa-S3 ELK1 ENCSR000ECI signal 2 1022 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/8aa74821-fb4a-4854-972a-4e662e52da57/ENCFF638BKZ.bigWig\ color 186,111,165\ longLabel HeLa-S3 ELK1 ENCSR000ECI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECI Signal\ track wgEncodeReg4TfChip_ENCFF638BKZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF301BBT ENCSR060TTR Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase signal 2 1022 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/58bed761-36d9-4ecd-b35c-c9c58134ac8d/ENCFF301BBT.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060TTR Signal\ track wgEncodeReg4Epigenetics_ENCFF301BBT\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF555RVY ENCSR967JPI - strand bigWig Gastrocnemius medialis tissue male adult (54 years) - strand total RNA-seq signal 2 1022 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/3392dd4e-b2c8-4dbb-ae8e-6bb3c128f2f7/ENCFF555RVY.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue male adult (54 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR967JPI - strand\ track wgEncodeReg4RnaSeq_ENCFF555RVY\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse 0 1022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_rev MyoblastToMyotubes_Day02D1- bigWig Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse 1 1022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor1.CNhs13849.13471-144I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor1_CNhs13849_13471-144I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13471-144I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor1_CNhs13849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13471-144I6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF978RPI breastEpi EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF978RPI) 0 1023 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF978RPI)\ parent encTfChipPk off\ shortLabel breastEpi EP300 1\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF978RPI\ wgEncodeReg4TfChip_ENCFF104OCU ENCSR000ECJ Peak bigBed 5 HeLa-S3 ZKSCAN1 peaks 4 1023 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6fd36595-32d2-4e51-bc70-22ba26debcae/ENCFF104OCU.bigBed\ labelFields none\ longLabel HeLa-S3 ZKSCAN1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF104OCU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF424YRZ ENCSR060UPU Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 89 years DNase peak 4 1023 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/92b613dd-e2a5-4518-9cc4-e25f532779b9/ENCFF424YRZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 89 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060UPU Peak\ track wgEncodeReg4Epigenetics_ENCFF424YRZ\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF403JFA ENCSR968WKR + strand bigWig Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days + strand total RNA-seq signal 2 1023 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/aff83e7b-1768-41ee-ac47-7b41b7fb2b6f/ENCFF403JFA.bigWig\ color 155,155,18\ longLabel Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR968WKR + strand\ track wgEncodeReg4RnaSeq_ENCFF403JFA\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward 0 1023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward 1 1023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF757KZD breastEpi EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF757KZD) 0 1024 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF757KZD)\ parent encTfChipPk off\ shortLabel breastEpi EP300 2\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF757KZD\ wgEncodeReg4TfChip_ENCFF093YWI ENCSR000ECJ Signal bigWig HeLa-S3 ZKSCAN1 ENCSR000ECJ signal 2 1024 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/87498ea5-1009-44ec-862c-59574186c942/ENCFF093YWI.bigWig\ color 186,111,165\ longLabel HeLa-S3 ZKSCAN1 ENCSR000ECJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECJ Signal\ track wgEncodeReg4TfChip_ENCFF093YWI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF282SYR ENCSR060UPU Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 89 years DNase signal 2 1024 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/ed2bed6e-6668-4f55-92e2-86af7c89f8f9/ENCFF282SYR.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR060UPU Signal\ track wgEncodeReg4Epigenetics_ENCFF282SYR\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF564NKV ENCSR968WKR - strand bigWig Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days - strand total RNA-seq signal 2 1024 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/37d7628a-b9af-4ca1-b5d3-714266bddf45/ENCFF564NKV.bigWig\ color 155,155,18\ longLabel Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR968WKR - strand\ track wgEncodeReg4RnaSeq_ENCFF564NKV\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward 0 1024 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_fwd MyoblastToMyotubes_Day02D2+ bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward 1 1024 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF614VFU breastEpi EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF614VFU) 0 1025 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF614VFU)\ parent encTfChipPk off\ shortLabel breastEpi EP300 3\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF614VFU\ wgEncodeReg4TfChip_ENCFF304XGR ENCSR000ECK Peak bigBed 5 HeLa-S3 MAFK peaks 4 1025 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/96fb1bef-f327-4e62-adde-6ecc5b60e9ab/ENCFF304XGR.bigBed\ labelFields none\ longLabel HeLa-S3 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF304XGR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF416JTN ENCSR061PIA Peak bigBed 5 Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K27ac peak 4 1025 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/f80e13d1-3d5d-4c40-b7b1-0873820e0617/ENCFF416JTN.bigBed\ color 181,145,0\ longLabel Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR061PIA Peak\ track wgEncodeReg4Epigenetics_ENCFF416JTN\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF418DSY ENCSR971GPJ + strand bigWig HT-29 + strand total RNA-seq signal 2 1025 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/61f1c965-3bf4-47c0-b55e-513425923bf0/ENCFF418DSY.bigWig\ color 86,86,36\ longLabel HT-29 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR971GPJ + strand\ track wgEncodeReg4RnaSeq_ENCFF418DSY\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse 0 1025 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse 1 1025 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14598.13507-145D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor2_CNhs14598_13507-145D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13507-145D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor2_CNhs14598_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13507-145D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF906VTL breastEpi EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF906VTL) 0 1026 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in breast_epithelium from ENCODE 3 (ENCFF906VTL)\ parent encTfChipPk off\ shortLabel breastEpi EP300 4\ subGroups cellType=breast_epithelium factor=EP300\ track encTfChipPkENCFF906VTL\ wgEncodeReg4TfChip_ENCFF556HSM ENCSR000ECK Signal bigWig HeLa-S3 MAFK ENCSR000ECK signal 2 1026 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/0681bd59-bc17-42a9-8749-6df57633d7a8/ENCFF556HSM.bigWig\ color 186,111,165\ longLabel HeLa-S3 MAFK ENCSR000ECK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECK Signal\ track wgEncodeReg4TfChip_ENCFF556HSM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF644QSV ENCSR061PIA Signal bigWig Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K27ac signal 2 1026 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/dd463edc-dbb4-4478-bb63-6e467b158b1a/ENCFF644QSV.bigWig\ color 181,145,0\ longLabel Central memory CD8-positive, alpha-beta T cell male adult 36 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR061PIA Signal\ track wgEncodeReg4Epigenetics_ENCFF644QSV\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF407KMF ENCSR971GPJ - strand bigWig HT-29 - strand total RNA-seq signal 2 1026 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/9914c471-d452-4757-891d-694321a6b03d/ENCFF407KMF.bigWig\ color 86,86,36\ longLabel HT-29 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR971GPJ - strand\ track wgEncodeReg4RnaSeq_ENCFF407KMF\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse 0 1026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_rev MyoblastToMyotubes_Day02D2- bigWig Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse 1 1026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor2.CNhs14570.13480-145A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor2_CNhs14570_13480-145A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13480-145A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor2_CNhs14570_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13480-145A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF294TAI brestEpi POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF294TAI) 0 1027 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF294TAI)\ parent encTfChipPk off\ shortLabel brestEpi POLR2A 1\ subGroups cellType=breast_epithelium factor=POLR2A\ track encTfChipPkENCFF294TAI\ wgEncodeReg4TfChip_ENCFF212FIJ ENCSR000ECL Peak bigBed 5 HeLa-S3 MAZ peaks 4 1027 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/fef40fb5-d233-407a-986c-e3e529f601cd/ENCFF212FIJ.bigBed\ labelFields none\ longLabel HeLa-S3 MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF212FIJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF337VWV ENCSR062DUU Peak bigBed 5 Stomach tissue female embryo 105 days DNase peak 4 1027 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/e5d884d5-c9eb-407b-98fb-a2374c0e78f8/ENCFF337VWV.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR062DUU Peak\ track wgEncodeReg4Epigenetics_ENCFF337VWV\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF943UFE ENCSR971KNW + strand bigWig MG63 + strand total RNA-seq signal 2 1027 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/704ef033-4d47-4e45-8545-3c02de510a7a/ENCFF943UFE.bigWig\ color 121,147,150\ longLabel MG63 + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR971KNW + strand\ track wgEncodeReg4RnaSeq_ENCFF943UFE\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward 0 1027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward 1 1027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF607YLT brestEpi POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF607YLT) 0 1028 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in breast_epithelium from ENCODE 3 (ENCFF607YLT)\ parent encTfChipPk off\ shortLabel brestEpi POLR2A 2\ subGroups cellType=breast_epithelium factor=POLR2A\ track encTfChipPkENCFF607YLT\ wgEncodeReg4TfChip_ENCFF826WJT ENCSR000ECL Signal bigWig HeLa-S3 MAZ ENCSR000ECL signal 2 1028 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/6b0872f9-6e40-47f5-9894-8f894b542244/ENCFF826WJT.bigWig\ color 186,111,165\ longLabel HeLa-S3 MAZ ENCSR000ECL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECL Signal\ track wgEncodeReg4TfChip_ENCFF826WJT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF310NVD ENCSR062DUU Signal bigWig Stomach tissue female embryo 105 days DNase signal 2 1028 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/baf1a728-0cd2-4776-b665-36c27cb17c53/ENCFF310NVD.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR062DUU Signal\ track wgEncodeReg4Epigenetics_ENCFF310NVD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF359LGA ENCSR971KNW - strand bigWig MG63 - strand total RNA-seq signal 2 1028 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/08/ef404779-52ae-43ea-b0e8-c19571d21c20/ENCFF359LGA.bigWig\ color 121,147,150\ longLabel MG63 - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR971KNW - strand\ track wgEncodeReg4RnaSeq_ENCFF359LGA\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward 0 1028 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_fwd MyoblastToMyotubes_Day02D3+ bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward 1 1028 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF471KYI ENCSR000ECM Peak bigBed 5 HeLa-S3 RCOR1 peaks 4 1029 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/d0422f07-4c54-4e8e-b4ed-215afa09fca0/ENCFF471KYI.bigBed\ labelFields none\ longLabel HeLa-S3 RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF471KYI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF754NXW ENCSR062DXC Peak bigBed 5 Muscle of arm tissue female embryo 115 days DNase peak 4 1029 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/672eb0dd-badd-4da2-b5d8-4a57ad9e2b79/ENCFF754NXW.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue female embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR062DXC Peak\ track wgEncodeReg4Epigenetics_ENCFF754NXW\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF776XRR ENCSR985WSV + strand bigWig Dorsolateral prefrontal cortex tissue female adult (84 years) + strand total RNA-seq signal 2 1029 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/300ca8c4-4564-49ab-9cc7-d4cbc2155150/ENCFF776XRR.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (84 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR985WSV + strand\ track wgEncodeReg4RnaSeq_ENCFF776XRR\ type bigWig\ visibility full\ encTfChipPkENCFF243AGG heartFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_fibroblast from ENCODE 3 (ENCFF243AGG) 0 1029 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_fibroblast from ENCODE 3 (ENCFF243AGG)\ parent encTfChipPk off\ shortLabel heartFibro CTCF\ subGroups cellType=cardiac_fibroblast factor=CTCF\ track encTfChipPkENCFF243AGG\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse 0 1029 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse 1 1029 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF339BCT ENCSR000ECM Signal bigWig HeLa-S3 RCOR1 ENCSR000ECM signal 2 1030 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/2995db82-7aea-4dd0-86f6-73b9bb96ff9f/ENCFF339BCT.bigWig\ color 186,111,165\ longLabel HeLa-S3 RCOR1 ENCSR000ECM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECM Signal\ track wgEncodeReg4TfChip_ENCFF339BCT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF636XBE ENCSR062DXC Signal bigWig Muscle of arm tissue female embryo 115 days DNase signal 2 1030 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/fb93520f-307e-4b1a-b562-27ce8cb6d4e0/ENCFF636XBE.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue female embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR062DXC Signal\ track wgEncodeReg4Epigenetics_ENCFF636XBE\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF148OKE ENCSR985WSV - strand bigWig Dorsolateral prefrontal cortex tissue female adult (84 years) - strand total RNA-seq signal 2 1030 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/addbcdf5-14f6-48ec-9873-99657e481cf4/ENCFF148OKE.bigWig\ color 155,155,18\ longLabel Dorsolateral prefrontal cortex tissue female adult (84 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR985WSV - strand\ track wgEncodeReg4RnaSeq_ENCFF148OKE\ type bigWig\ visibility full\ encTfChipPkENCFF301YXM heartMuscl CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF301YXM) 0 1030 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF301YXM)\ parent encTfChipPk off\ shortLabel heartMuscl CTCF 1\ subGroups cellType=cardiac_muscle_cell factor=CTCF\ track encTfChipPkENCFF301YXM\ MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse 0 1030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20control%20donor3.CNhs14579.13489-145B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, control donor3_CNhs14579_13489-145B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13489-145B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02ControlDonor3_CNhs14579_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13489-145B6\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_rev MyoblastToMyotubes_Day02D3- bigWig Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse 1 1030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day02%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14607.13516-145E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day02, Duchenne Muscular Dystrophy donor3_CNhs14607_13516-145E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13516-145E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day02D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay02DuchenneMuscularDystrophyDonor3_CNhs14607_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13516-145E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF398RFF ENCSR000ECN Peak bigBed 5 HeLa-S3 MAX peaks 4 1031 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/b30ae417-2bfa-47f0-983b-4df35b1193fe/ENCFF398RFF.bigBed\ labelFields none\ longLabel HeLa-S3 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF398RFF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF974AQC ENCSR062JAC Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 1031 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/d257e320-d594-411a-875b-ca78831ce8a3/ENCFF974AQC.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR062JAC Peak\ track wgEncodeReg4Epigenetics_ENCFF974AQC\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF684CHN ENCSR989IFF + strand bigWig CD8-positive, alpha-beta memory T cell male adult (30 years) + strand total RNA-seq signal 2 1031 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/00ece2c4-5d90-4502-9ca0-be3e007873c5/ENCFF684CHN.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta memory T cell male adult (30 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR989IFF + strand\ track wgEncodeReg4RnaSeq_ENCFF684CHN\ type bigWig\ visibility full\ encTfChipPkENCFF863ZIN heartMuscl CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF863ZIN) 0 1031 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in cardiac_muscle_cell from ENCODE 3 (ENCFF863ZIN)\ parent encTfChipPk off\ shortLabel heartMuscl CTCF 2\ subGroups cellType=cardiac_muscle_cell factor=CTCF\ track encTfChipPkENCFF863ZIN\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward 0 1031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward 1 1031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF136ZAK chorPlexEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in choroid_plexus_epithelial_cell from ENCODE 3 (ENCFF136ZAK) 0 1032 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in choroid_plexus_epithelial_cell from ENCODE 3 (ENCFF136ZAK)\ parent encTfChipPk off\ shortLabel chorPlexEpi CTCF\ subGroups cellType=choroid_plexus_epithelial_cell factor=CTCF\ track encTfChipPkENCFF136ZAK\ wgEncodeReg4TfChip_ENCFF713LTW ENCSR000ECN Signal bigWig HeLa-S3 MAX ENCSR000ECN signal 2 1032 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d8e0c1fa-cf06-427f-b180-dd9d5461a16c/ENCFF713LTW.bigWig\ color 186,111,165\ longLabel HeLa-S3 MAX ENCSR000ECN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECN Signal\ track wgEncodeReg4TfChip_ENCFF713LTW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF968SXQ ENCSR062JAC Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 1032 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/da2c57cf-0daa-447d-8ea4-e7c059ce0154/ENCFF968SXQ.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR062JAC Signal\ track wgEncodeReg4Epigenetics_ENCFF968SXQ\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF690PCV ENCSR989IFF - strand bigWig CD8-positive, alpha-beta memory T cell male adult (30 years) - strand total RNA-seq signal 2 1032 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/ba6cd326-5492-46d4-b716-0d9e70b20c3a/ENCFF690PCV.bigWig\ color 254,75,173\ longLabel CD8-positive, alpha-beta memory T cell male adult (30 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR989IFF - strand\ track wgEncodeReg4RnaSeq_ENCFF690PCV\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward 0 1032 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_fwd MyoblastToMyotubes_Day03D1+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward 1 1032 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF078QRQ ENCSR000ECP Peak bigBed 5 HeLa-S3 CHD2 peaks 4 1033 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/5ae8f289-c7ac-4955-80b7-e024a51ecb52/ENCFF078QRQ.bigBed\ labelFields none\ longLabel HeLa-S3 CHD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF078QRQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF616WMY ENCSR062SVK Peak bigBed 5 Right atrium auricular region tissue female adult 51 years ATAC peak 4 1033 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/902ff153-0e4f-480b-a269-3a3a43e7a2b3/ENCFF616WMY.bigBed\ color 2,199,185\ longLabel Right atrium auricular region tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR062SVK Peak\ track wgEncodeReg4Epigenetics_ENCFF616WMY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF057TXE ENCSR991HIR + strand bigWig Lower leg skin tissue female adult (53 years) + strand total RNA-seq signal 2 1033 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/bb7fb46c-25a4-48fc-b904-b18dba4d9960/ENCFF057TXE.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue female adult (53 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR991HIR + strand\ track wgEncodeReg4RnaSeq_ENCFF057TXE\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse 0 1033 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse 1 1033 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor1.CNhs13850.13472-144I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor1_CNhs13850_13472-144I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13472-144I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor1_CNhs13850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13472-144I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF522JCV umbilVenEndo CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF522JCV) 0 1033 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF522JCV)\ parent encTfChipPk off\ shortLabel umbilVenEndo CTCF\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=CTCF\ track encTfChipPkENCFF522JCV\ wgEncodeReg4TfChip_ENCFF239ZWG ENCSR000ECP Signal bigWig HeLa-S3 CHD2 ENCSR000ECP signal 2 1034 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d3c7a8f3-b915-4100-a146-9ce78c8cd963/ENCFF239ZWG.bigWig\ color 186,111,165\ longLabel HeLa-S3 CHD2 ENCSR000ECP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECP Signal\ track wgEncodeReg4TfChip_ENCFF239ZWG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF003PQX ENCSR062SVK Signal bigWig Right atrium auricular region tissue female adult 51 years ATAC signal 2 1034 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/ccf43f9f-f2f5-478d-8bac-1a5d42c56140/ENCFF003PQX.bigWig\ color 2,199,185\ longLabel Right atrium auricular region tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR062SVK Signal\ track wgEncodeReg4Epigenetics_ENCFF003PQX\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF740PET ENCSR991HIR - strand bigWig Lower leg skin tissue female adult (53 years) - strand total RNA-seq signal 2 1034 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/14/8b53bb3a-fabc-4059-9f4d-9a511c815415/ENCFF740PET.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue female adult (53 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR991HIR - strand\ track wgEncodeReg4RnaSeq_ENCFF740PET\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse 0 1034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_rev MyoblastToMyotubes_Day03D1- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse 1 1034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14589.13499-145C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor1_CNhs14589_13499-145C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13499-145C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor1_CNhs14589_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13499-145C7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF327GZX umbilVeinEndo FOS narrowPeak Transcription Factor ChIP-seq Peaks of FOS in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF327GZX) 0 1034 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOS in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF327GZX)\ parent encTfChipPk on\ shortLabel umbilVeinEndo FOS\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=FOS\ track encTfChipPkENCFF327GZX\ wgEncodeReg4TfChip_ENCFF992MML ENCSR000ECS Peak bigBed 5 HeLa-S3 SMC3 peaks 4 1035 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/81ec32d1-cfe8-4f37-b83c-142eecc701fd/ENCFF992MML.bigBed\ labelFields none\ longLabel HeLa-S3 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF992MML\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF502IJF ENCSR063HOI Peak bigBed 5 Stomach tissue male adult 54 years H3K4me3 peak 4 1035 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f7d94c04-02b2-4069-8b8b-d00f25c3083f/ENCFF502IJF.bigBed\ color 255,0,0\ longLabel Stomach tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR063HOI Peak\ track wgEncodeReg4Epigenetics_ENCFF502IJF\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF573WTP ENCSR993IPO + strand bigWig Left cardiac atrium tissue male adult (60 years) + strand total RNA-seq signal 2 1035 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/2e93662f-4efb-428a-b06f-7338f015aa46/ENCFF573WTP.bigWig\ color 116,50,165\ longLabel Left cardiac atrium tissue male adult (60 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR993IPO + strand\ track wgEncodeReg4RnaSeq_ENCFF573WTP\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward 0 1035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward 1 1035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF987YIJ umbilVein GATA2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA2 in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF987YIJ) 0 1035 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA2 in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF987YIJ)\ parent encTfChipPk off\ shortLabel umbilVein GATA2\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=GATA2\ track encTfChipPkENCFF987YIJ\ wgEncodeReg4TfChip_ENCFF971PWK ENCSR000ECS Signal bigWig HeLa-S3 SMC3 ENCSR000ECS signal 2 1036 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f02d0819-9eb1-4722-a766-928426fdf56f/ENCFF971PWK.bigWig\ color 186,111,165\ longLabel HeLa-S3 SMC3 ENCSR000ECS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECS Signal\ track wgEncodeReg4TfChip_ENCFF971PWK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF391KDD ENCSR063HOI Signal bigWig Stomach tissue male adult 54 years H3K4me3 signal 2 1036 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/94fbc87f-b09d-4d7a-956e-88bb42bd19f1/ENCFF391KDD.bigWig\ color 255,0,0\ longLabel Stomach tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR063HOI Signal\ track wgEncodeReg4Epigenetics_ENCFF391KDD\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF941QXN ENCSR993IPO - strand bigWig Left cardiac atrium tissue male adult (60 years) - strand total RNA-seq signal 2 1036 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/2b41fa63-b6aa-45aa-aa1b-d47a92a7cb6b/ENCFF941QXN.bigWig\ color 116,50,165\ longLabel Left cardiac atrium tissue male adult (60 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR993IPO - strand\ track wgEncodeReg4RnaSeq_ENCFF941QXN\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward 0 1036 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_fwd MyoblastToMyotubes_Day03D2+ bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward 1 1036 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF387VGY umbilVein POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF387VGY) 0 1036 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in endothelial_cell_of_umbilical_vein from ENCODE 3 (ENCFF387VGY)\ parent encTfChipPk off\ shortLabel umbilVein POLR2A\ subGroups cellType=endothelial_cell_of_umbilical_vein factor=POLR2A\ track encTfChipPkENCFF387VGY\ wgEncodeReg4TfChip_ENCFF045HUU ENCSR000ECT Peak bigBed 5 HeLa-S3 POLR2AphosphoS2 peaks 4 1037 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5a758a2a-b816-46ff-8d80-6787cea6730e/ENCFF045HUU.bigBed\ labelFields none\ longLabel HeLa-S3 POLR2AphosphoS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF045HUU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF177ZIO ENCSR063UNG Peak bigBed 5 HG03196 ATAC peak 4 1037 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8cf323a5-c2d6-44e1-944e-68a39aba41d0/ENCFF177ZIO.bigBed\ color 2,199,185\ longLabel HG03196 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR063UNG Peak\ track wgEncodeReg4Epigenetics_ENCFF177ZIO\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF118SVL ENCSR993JMV + strand bigWig Endothelial cell of umbilical vein male newborn + strand total RNA-seq signal 2 1037 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/20/2633f9de-6d47-44e3-947a-977612f46756/ENCFF118SVL.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein male newborn + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR993JMV + strand\ track wgEncodeReg4RnaSeq_ENCFF118SVL\ type bigWig\ visibility full\ encTfChipPkENCFF796AAX esophagEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_esophagus from ENCODE 3 (ENCFF796AAX) 0 1037 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_esophagus from ENCODE 3 (ENCFF796AAX)\ parent encTfChipPk off\ shortLabel esophagEpi CTCF\ subGroups cellType=epithelial_cell_of_esophagus factor=CTCF\ track encTfChipPkENCFF796AAX\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse 0 1037 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse 1 1037 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14599.13508-145D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, Duchenne Muscular Dystrophy donor2_CNhs14599_13508-145D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13508-145D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03DuchenneMuscularDystrophyDonor2_CNhs14599_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13508-145D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF738UXP ENCSR000ECT Signal bigWig HeLa-S3 POLR2AphosphoS2 ENCSR000ECT signal 2 1038 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/0061cdd3-a68a-4271-8b47-fe0402a42674/ENCFF738UXP.bigWig\ color 186,111,165\ longLabel HeLa-S3 POLR2AphosphoS2 ENCSR000ECT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECT Signal\ track wgEncodeReg4TfChip_ENCFF738UXP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF059MRU ENCSR063UNG Signal bigWig HG03196 ATAC signal 2 1038 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/741dfc61-dd06-45d5-ac79-185083047878/ENCFF059MRU.bigWig\ color 2,199,185\ longLabel HG03196 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR063UNG Signal\ track wgEncodeReg4Epigenetics_ENCFF059MRU\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF250SDR ENCSR993JMV - strand bigWig Endothelial cell of umbilical vein male newborn - strand total RNA-seq signal 2 1038 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/20/4469d33b-a685-48d0-a82e-6cc63112bb6b/ENCFF250SDR.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein male newborn - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR993JMV - strand\ track wgEncodeReg4RnaSeq_ENCFF250SDR\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse 0 1038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_rev MyoblastToMyotubes_Day03D2- bigWig Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse 1 1038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor2.CNhs14571.13481-145A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor2_CNhs14571_13481-145A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13481-145A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor2_CNhs14571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13481-145A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF712LFQ prostateEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_prostate from ENCODE 3 (ENCFF712LFQ) 0 1038 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in epithelial_cell_of_prostate from ENCODE 3 (ENCFF712LFQ)\ parent encTfChipPk off\ shortLabel prostateEpi CTCF\ subGroups cellType=epithelial_cell_of_prostate factor=CTCF\ track encTfChipPkENCFF712LFQ\ wgEncodeReg4TfChip_ENCFF947VEL ENCSR000ECU Peak bigBed 5 HeLa-S3 MXI1 peaks 4 1039 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/e92915ef-f5b4-42e2-ac57-5df2e7d1da6b/ENCFF947VEL.bigBed\ labelFields none\ longLabel HeLa-S3 MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF947VEL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF715URT ENCSR064GBK Peak bigBed 5 Heart tissue female embryo 91 days DNase peak 4 1039 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/8ea334eb-24af-4240-95fc-9793dde7972a/ENCFF715URT.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue female embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR064GBK Peak\ track wgEncodeReg4Epigenetics_ENCFF715URT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF279KWD ENCSR995GRL + strand bigWig Activated T-cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal 2 1039 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/ebb1d221-3735-41fd-bd08-4f43b5142b97/ENCFF279KWD.bigWig\ color 254,75,173\ longLabel Activated T-cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR995GRL + strand\ track wgEncodeReg4RnaSeq_ENCFF279KWD\ type bigWig\ visibility full\ encTfChipPkENCFF789ZAT erythblst GATA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF789ZAT) 0 1039 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF789ZAT)\ parent encTfChipPk off\ shortLabel erythblst GATA1 1\ subGroups cellType=erythroblast factor=GATA1\ track encTfChipPkENCFF789ZAT\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_fwd MyoblastToMyotubes_Day03D3+ bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward 0 1039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_fwd MyoblastToMyotubes_Day03D3+ bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward 1 1039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF547NVJ ENCSR000ECU Signal bigWig HeLa-S3 MXI1 ENCSR000ECU signal 2 1040 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/be7436bf-32cc-414f-8cf8-5324dedd1dc2/ENCFF547NVJ.bigWig\ color 186,111,165\ longLabel HeLa-S3 MXI1 ENCSR000ECU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECU Signal\ track wgEncodeReg4TfChip_ENCFF547NVJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF411RQS ENCSR064GBK Signal bigWig Heart tissue female embryo 91 days DNase signal 2 1040 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/8aabaa25-f53b-4b8f-b1a5-e97bb9cf79bb/ENCFF411RQS.bigWig\ color 6,218,147\ longLabel Heart tissue female embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR064GBK Signal\ track wgEncodeReg4Epigenetics_ENCFF411RQS\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF285SGT ENCSR995GRL - strand bigWig Activated T-cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal 2 1040 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/b42c0672-7d29-4619-952e-7517e452f0c8/ENCFF285SGT.bigWig\ color 254,75,173\ longLabel Activated T-cell female adult (21 years) treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR995GRL - strand\ track wgEncodeReg4RnaSeq_ENCFF285SGT\ type bigWig\ visibility full\ encTfChipPkENCFF180BYN erythblst GATA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF180BYN) 0 1040 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GATA1 in erythroblast from ENCODE 3 (ENCFF180BYN)\ parent encTfChipPk off\ shortLabel erythblst GATA1 2\ subGroups cellType=erythroblast factor=GATA1\ track encTfChipPkENCFF180BYN\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_rev MyoblastToMyotubes_Day03D3- bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse 0 1040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day03D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_rev MyoblastToMyotubes_Day03D3- bigWig Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse 1 1040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day03%2c%20control%20donor3.CNhs14580.13490-145B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day03, control donor3_CNhs14580_13490-145B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13490-145B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day03D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay03ControlDonor3_CNhs14580_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13490-145B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF089VPQ ENCSR000ECV Peak bigBed 5 HeLa-S3 EP300 peaks 4 1041 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b91c98b2-6843-40d2-999b-e6a1c1192a6c/ENCFF089VPQ.bigBed\ labelFields none\ longLabel HeLa-S3 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF089VPQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF790YWY ENCSR065CER Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 1041 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/9a21c34c-9e73-4c5d-bcf6-302300cd5c9d/ENCFF790YWY.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR065CER Peak\ track wgEncodeReg4Epigenetics_ENCFF790YWY\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF098OUC ENCSR996OED + strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal 2 1041 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/efd04c19-7350-4745-bfae-4b8238d0af4b/ENCFF098OUC.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR996OED + strand\ track wgEncodeReg4RnaSeq_ENCFF098OUC\ type bigWig\ visibility full\ encTfChipPkENCFF897UFD esphMscMuc CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF897UFD) 0 1041 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF897UFD)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 1\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF897UFD\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward 0 1041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward 1 1041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF541JEL ENCSR000ECV Signal bigWig HeLa-S3 EP300 ENCSR000ECV signal 2 1042 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4f541415-92a9-4ba9-ade7-30bf1d7be960/ENCFF541JEL.bigWig\ color 186,111,165\ longLabel HeLa-S3 EP300 ENCSR000ECV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECV Signal\ track wgEncodeReg4TfChip_ENCFF541JEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF450FBH ENCSR065CER Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 1042 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/a9c65403-b07d-4968-86e9-c6a94ad974ea/ENCFF450FBH.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR065CER Signal\ track wgEncodeReg4Epigenetics_ENCFF450FBH\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF693XMJ ENCSR996OED - strand bigWig Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal 2 1042 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/24/c03261c8-f862-4381-aa1d-64097bdb78c1/ENCFF693XMJ.bigWig\ color 254,75,173\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult (43 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR996OED - strand\ track wgEncodeReg4RnaSeq_ENCFF693XMJ\ type bigWig\ visibility full\ encTfChipPkENCFF373DVN esphMscMuc CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF373DVN) 0 1042 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF373DVN)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 2\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF373DVN\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward 0 1042 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_fwd MyoblastToMyotubes_Day04D1+ bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward 1 1042 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF765YUZ ENCSR000ECW Peak bigBed 5 HeLa-S3 USF2 peaks 4 1043 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/08/f72673b0-f6f6-4daa-9c49-e0084849c50f/ENCFF765YUZ.bigBed\ labelFields none\ longLabel HeLa-S3 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF765YUZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF741STA ENCSR065QAA Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak 4 1043 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/4591c00b-92f8-4db2-9b84-d0fe1ca30d8f/ENCFF741STA.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR065QAA Peak\ track wgEncodeReg4Epigenetics_ENCFF741STA\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF895JFS ENCSR997KDB + strand bigWig Heart right ventricle tissue female adult (59 years) + strand total RNA-seq signal 2 1043 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/7ab4aa75-292d-4ac0-b10f-f471314c4abe/ENCFF895JFS.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (59 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR997KDB + strand\ track wgEncodeReg4RnaSeq_ENCFF895JFS\ type bigWig\ visibility full\ encTfChipPkENCFF725FJK esphMscMuc CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF725FJK) 0 1043 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF725FJK)\ parent encTfChipPk off\ shortLabel esphMscMuc CTCF 3\ subGroups cellType=esophagus_muscularis_mucosa factor=CTCF\ track encTfChipPkENCFF725FJK\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse 0 1043 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse 1 1043 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14590.13500-145C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor1_CNhs14590_13500-145C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13500-145C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor1_CNhs14590_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13500-145C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF828UPZ ENCSR000ECW Signal bigWig HeLa-S3 USF2 ENCSR000ECW signal 2 1044 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/08/3a9c9b8d-5d57-49a5-b061-d8d9024d1349/ENCFF828UPZ.bigWig\ color 186,111,165\ longLabel HeLa-S3 USF2 ENCSR000ECW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECW Signal\ track wgEncodeReg4TfChip_ENCFF828UPZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF447SLB ENCSR065QAA Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal 2 1044 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/dd6f8c12-34ec-450c-973e-98c89ad91703/ENCFF447SLB.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR065QAA Signal\ track wgEncodeReg4Epigenetics_ENCFF447SLB\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF370QPM ENCSR997KDB - strand bigWig Heart right ventricle tissue female adult (59 years) - strand total RNA-seq signal 2 1044 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/03/ebc3ea9a-2fe6-4b8c-92fd-a5d3b2c4d6e6/ENCFF370QPM.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (59 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR997KDB - strand\ track wgEncodeReg4RnaSeq_ENCFF370QPM\ type bigWig\ visibility full\ encTfChipPkENCFF081YBG esphMscMc EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF081YBG) 0 1044 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF081YBG)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 1\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF081YBG\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse 0 1044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_rev MyoblastToMyotubes_Day04D1- bigWig Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse 1 1044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor1.CNhs13851.13473-144I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor1_CNhs13851_13473-144I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13473-144I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor1_CNhs13851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13473-144I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF703XPB ENCSR000ECX Peak bigBed 5 HeLa-S3 RFX5 peaks 4 1045 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/08e4adcb-785f-47ce-b9c6-c8641744feed/ENCFF703XPB.bigBed\ labelFields none\ longLabel HeLa-S3 RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF703XPB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF690LBT ENCSR066GBX Peak bigBed 5 Right atrium auricular region tissue female adult 53 years CTCF peak 4 1045 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/cc97dbfc-e403-4277-bd58-75d18d7a712f/ENCFF690LBT.bigBed\ color 0,176,240\ labelFields none\ longLabel Right atrium auricular region tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR066GBX Peak\ track wgEncodeReg4Epigenetics_ENCFF690LBT\ type bigBed 5\ visibility squish\ wgEncodeReg4RnaSeq_ENCFF286ZLQ ENCSR997XXK + strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal 2 1045 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/bac1d2c4-7003-405f-8154-324ed54dfba5/ENCFF286ZLQ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) + strand total RNA-seq signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR997XXK + strand\ track wgEncodeReg4RnaSeq_ENCFF286ZLQ\ type bigWig\ visibility full\ encTfChipPkENCFF261OWX esphMscMc EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF261OWX) 0 1045 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF261OWX)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 2\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF261OWX\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward 0 1045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward 1 1045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF618YUX ENCSR000ECX Signal bigWig HeLa-S3 RFX5 ENCSR000ECX signal 2 1046 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a51de68f-56da-44a0-94d7-f42e8170f1d1/ENCFF618YUX.bigWig\ color 186,111,165\ longLabel HeLa-S3 RFX5 ENCSR000ECX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECX Signal\ track wgEncodeReg4TfChip_ENCFF618YUX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF886TBW ENCSR066GBX Signal bigWig Right atrium auricular region tissue female adult 53 years CTCF signal 2 1046 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/208b8a70-d0a2-49e4-88a8-6afa47f49998/ENCFF886TBW.bigWig\ color 0,176,240\ longLabel Right atrium auricular region tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR066GBX Signal\ track wgEncodeReg4Epigenetics_ENCFF886TBW\ type bigWig\ visibility full\ wgEncodeReg4RnaSeq_ENCFF367VCU ENCSR997XXK - strand bigWig Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal 2 1046 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/05/13/78727347-2912-416b-abd6-0aca43cc6efe/ENCFF367VCU.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (86 years) - strand total RNA-seq signal\ maxHeightPixels 100:32:8\ negateValues on\ parent wgEncodeReg4RnaSeq off\ shortLabel ENCSR997XXK - strand\ track wgEncodeReg4RnaSeq_ENCFF367VCU\ type bigWig\ visibility full\ encTfChipPkENCFF287SLI esphMscMc EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF287SLI) 0 1046 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF287SLI)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 3\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF287SLI\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward 0 1046 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_fwd MyoblastToMyotubes_Day04D2+ bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward 1 1046 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF893HDJ ENCSR000ECY Peak bigBed 5 HeLa-S3 PRDM1 peaks 4 1047 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5c6ff468-3570-47b3-9716-1fb6ea8a768c/ENCFF893HDJ.bigBed\ labelFields none\ longLabel HeLa-S3 PRDM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF893HDJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF657NDP ENCSR066GUY Peak bigBed 5 Placental basal plate tissue male embryo 38 weeks H3K27ac peak 4 1047 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/dd641aaf-dbbd-434b-8ac5-7108a39088a3/ENCFF657NDP.bigBed\ color 181,145,0\ longLabel Placental basal plate tissue male embryo 38 weeks H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR066GUY Peak\ track wgEncodeReg4Epigenetics_ENCFF657NDP\ type bigBed 5\ visibility squish\ encTfChipPkENCFF087RBS esphMscMc EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF087RBS) 0 1047 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF087RBS)\ parent encTfChipPk off\ shortLabel esphMscMc EP300 4\ subGroups cellType=esophagus_muscularis_mucosa factor=EP300\ track encTfChipPkENCFF087RBS\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse 0 1047 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse 1 1047 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14600.13509-145D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor2_CNhs14600_13509-145D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13509-145D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor2_CNhs14600_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13509-145D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF390VHM ENCSR000ECY Signal bigWig HeLa-S3 PRDM1 ENCSR000ECY signal 2 1048 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/3091c730-d9ab-4301-9979-e27db666eac0/ENCFF390VHM.bigWig\ color 186,111,165\ longLabel HeLa-S3 PRDM1 ENCSR000ECY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECY Signal\ track wgEncodeReg4TfChip_ENCFF390VHM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF072GBE ENCSR066GUY Signal bigWig Placental basal plate tissue male embryo 38 weeks H3K27ac signal 2 1048 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/3bff6528-ac14-434e-9d06-d87577af1a88/ENCFF072GBE.bigWig\ color 181,145,0\ longLabel Placental basal plate tissue male embryo 38 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR066GUY Signal\ track wgEncodeReg4Epigenetics_ENCFF072GBE\ type bigWig\ visibility full\ encTfChipPkENCFF906CSG esophMscMc POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF906CSG) 0 1048 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_muscularis_mucosa from ENCODE 3 (ENCFF906CSG)\ parent encTfChipPk off\ shortLabel esophMscMc POLR2A\ subGroups cellType=esophagus_muscularis_mucosa factor=POLR2A\ track encTfChipPkENCFF906CSG\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse 0 1048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_rev MyoblastToMyotubes_Day04D2- bigWig Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse 1 1048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor2.CNhs14572.13482-145A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor2_CNhs14572_13482-145A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13482-145A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor2_CNhs14572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13482-145A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF868VGE ENCSR000ECZ Peak bigBed 5 HeLa-S3 GTF2F1 peaks 4 1049 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/082faa5e-d3ab-461e-8782-8c140ea50269/ENCFF868VGE.bigBed\ labelFields none\ longLabel HeLa-S3 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF868VGE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF111WOP ENCSR066WZJ Peak bigBed 5 Kidney tissue embryo 80 days DNase peak 4 1049 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/d7c65f87-200c-4829-8f31-7a1f38f7d790/ENCFF111WOP.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue embryo 80 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR066WZJ Peak\ track wgEncodeReg4Epigenetics_ENCFF111WOP\ type bigBed 5\ visibility squish\ encTfChipPkENCFF898JJD esphSquEpi CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF898JJD) 0 1049 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF898JJD)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 1\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF898JJD\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward 0 1049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward 1 1049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF541OKE ENCSR000ECZ Signal bigWig HeLa-S3 GTF2F1 ENCSR000ECZ signal 2 1050 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/92823847-7cef-4a4e-919e-5009f5c7246d/ENCFF541OKE.bigWig\ color 186,111,165\ longLabel HeLa-S3 GTF2F1 ENCSR000ECZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000ECZ Signal\ track wgEncodeReg4TfChip_ENCFF541OKE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF694ESB ENCSR066WZJ Signal bigWig Kidney tissue embryo 80 days DNase signal 2 1050 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/9bd60f10-3e3b-45ef-bb56-a6f0a6ee659e/ENCFF694ESB.bigWig\ color 6,218,147\ longLabel Kidney tissue embryo 80 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR066WZJ Signal\ track wgEncodeReg4Epigenetics_ENCFF694ESB\ type bigWig\ visibility full\ encTfChipPkENCFF350AMQ esphSquEpi CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF350AMQ) 0 1050 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF350AMQ)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 2\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF350AMQ\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward 0 1050 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_fwd MyoblastToMyotubes_Day04D3+ bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward 1 1050 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF722WEG ENCSR000EDA Peak bigBed 5 HeLa-S3 CEBPB peaks 4 1051 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/bbc2251a-0371-4d0f-8323-b20b17da3f57/ENCFF722WEG.bigBed\ labelFields none\ longLabel HeLa-S3 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF722WEG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF517RQC ENCSR067BGS Peak bigBed 5 Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K27ac peak 4 1051 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/faf4feee-dd3c-4220-87d5-19fb8fa3b1e3/ENCFF517RQC.bigBed\ color 181,145,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR067BGS Peak\ track wgEncodeReg4Epigenetics_ENCFF517RQC\ type bigBed 5\ visibility squish\ encTfChipPkENCFF661IIS esphSquEpi CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF661IIS) 0 1051 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF661IIS)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 3\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF661IIS\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse 0 1051 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse 1 1051 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14609.13518-145E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, Duchenne Muscular Dystrophy donor3_CNhs14609_13518-145E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13518-145E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04DuchenneMuscularDystrophyDonor3_CNhs14609_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13518-145E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF868WMP ENCSR000EDA Signal bigWig HeLa-S3 CEBPB ENCSR000EDA signal 2 1052 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/f78acc17-c9a4-410c-a422-8185cd2c59d4/ENCFF868WMP.bigWig\ color 186,111,165\ longLabel HeLa-S3 CEBPB ENCSR000EDA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDA Signal\ track wgEncodeReg4TfChip_ENCFF868WMP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF365ANP ENCSR067BGS Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K27ac signal 2 1052 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/add12cbc-7ca0-4373-98f7-27f6a364ae7e/ENCFF365ANP.bigWig\ color 181,145,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR067BGS Signal\ track wgEncodeReg4Epigenetics_ENCFF365ANP\ type bigWig\ visibility full\ encTfChipPkENCFF505VMB esphSquEpi CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF505VMB) 0 1052 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in esophagus_squamous_epithelium from ENCODE 3 (ENCFF505VMB)\ parent encTfChipPk off\ shortLabel esphSquEpi CTCF 4\ subGroups cellType=esophagus_squamous_epithelium factor=CTCF\ track encTfChipPkENCFF505VMB\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse 0 1052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_rev MyoblastToMyotubes_Day04D3- bigWig Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse 1 1052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day04%2c%20control%20donor3.CNhs14581.13491-145B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day04, control donor3_CNhs14581_13491-145B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13491-145B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day04D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay04ControlDonor3_CNhs14581_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13491-145B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF218GPC ENCSR000EDB Peak bigBed 5 HeLa-S3 BRCA1 peaks 4 1053 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/8640e429-2601-4224-9dcf-e091a933c986/ENCFF218GPC.bigBed\ labelFields none\ longLabel HeLa-S3 BRCA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF218GPC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF468MEH ENCSR067KOO Peak bigBed 5 Natural killer cell male adult 33 years H3K27ac peak 4 1053 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/62c4ffbe-8c67-4b2c-bd52-035c895c97d1/ENCFF468MEH.bigBed\ color 181,145,0\ longLabel Natural killer cell male adult 33 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR067KOO Peak\ track wgEncodeReg4Epigenetics_ENCFF468MEH\ type bigBed 5\ visibility squish\ encTfChipPkENCFF157FXA esphSqEp POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF157FXA) 0 1053 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF157FXA)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 1\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF157FXA\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward 0 1053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward 1 1053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF690UED ENCSR000EDB Signal bigWig HeLa-S3 BRCA1 ENCSR000EDB signal 2 1054 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/bb881fba-9f26-4a8f-967c-b7a94267e4da/ENCFF690UED.bigWig\ color 186,111,165\ longLabel HeLa-S3 BRCA1 ENCSR000EDB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDB Signal\ track wgEncodeReg4TfChip_ENCFF690UED\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF802MJK ENCSR067KOO Signal bigWig Natural killer cell male adult 33 years H3K27ac signal 2 1054 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/0476576e-9e07-499d-908a-277a589d99b9/ENCFF802MJK.bigWig\ color 181,145,0\ longLabel Natural killer cell male adult 33 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR067KOO Signal\ track wgEncodeReg4Epigenetics_ENCFF802MJK\ type bigWig\ visibility full\ encTfChipPkENCFF542QLV esphSqEp POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF542QLV) 0 1054 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF542QLV)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 2\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF542QLV\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward 0 1054 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_fwd MyoblastToMyotubes_Day06D1+ bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward 1 1054 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF655DGU ENCSR000EDC Peak bigBed 5 HeLa-S3 STAT3 peaks 4 1055 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/8749d271-c497-4973-b8b8-be8630581924/ENCFF655DGU.bigBed\ labelFields none\ longLabel HeLa-S3 STAT3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF655DGU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF258PHG ENCSR068DJS Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years CTCF peak 4 1055 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/86553391-08fc-416b-90b7-2dc13a0566cb/ENCFF258PHG.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068DJS Peak\ track wgEncodeReg4Epigenetics_ENCFF258PHG\ type bigBed 5\ visibility squish\ encTfChipPkENCFF691ARB esphSqEp POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF691ARB) 0 1055 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF691ARB)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 3\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF691ARB\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse 0 1055 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse 1 1055 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14591.13501-145C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor1_CNhs14591_13501-145C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13501-145C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor1_CNhs14591_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13501-145C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF786MVZ ENCSR000EDC Signal bigWig HeLa-S3 STAT3 ENCSR000EDC signal 2 1056 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/8bf2e64c-ea84-40c5-8ad1-a99e1a454f66/ENCFF786MVZ.bigWig\ color 186,111,165\ longLabel HeLa-S3 STAT3 ENCSR000EDC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDC Signal\ track wgEncodeReg4TfChip_ENCFF786MVZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF457ZFQ ENCSR068DJS Signal bigWig Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years CTCF signal 2 1056 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/8b13d368-c1b8-4d23-8cc4-5574095fdf5b/ENCFF457ZFQ.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068DJS Signal\ track wgEncodeReg4Epigenetics_ENCFF457ZFQ\ type bigWig\ visibility full\ encTfChipPkENCFF930NQQ esphSqEp POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF930NQQ) 0 1056 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in esophagus_squamous_epithelium from ENCODE 3 (ENCFF930NQQ)\ parent encTfChipPk off\ shortLabel esphSqEp POLR2A 4\ subGroups cellType=esophagus_squamous_epithelium factor=POLR2A\ track encTfChipPkENCFF930NQQ\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse 0 1056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_rev MyoblastToMyotubes_Day06D1- bigWig Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse 1 1056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor1.CNhs13852.13474-144I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor1_CNhs13852_13474-144I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13474-144I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor1_CNhs13852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13474-144I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF715NNJ ENCSR000EDD Peak bigBed 5 HeLa-S3 TBP peaks 4 1057 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/0da4ffed-5a90-4859-a3f9-2756ba287aec/ENCFF715NNJ.bigBed\ labelFields none\ longLabel HeLa-S3 TBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF715NNJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF161DPW ENCSR068HEE Peak bigBed 5 Left ventricle myocardium inferior tissue male adult 60 years CTCF peak 4 1057 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/99c3f273-cf59-40de-af78-b80eae320251/ENCFF161DPW.bigBed\ color 0,176,240\ labelFields none\ longLabel Left ventricle myocardium inferior tissue male adult 60 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068HEE Peak\ track wgEncodeReg4Epigenetics_ENCFF161DPW\ type bigBed 5\ visibility squish\ encTfChipPkENCFF777ODE lungFibro CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF777ODE) 0 1057 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF777ODE)\ parent encTfChipPk off\ shortLabel lungFibro CTCF 1\ subGroups cellType=fibroblast_of_lung factor=CTCF\ track encTfChipPkENCFF777ODE\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward 0 1057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward 1 1057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF613AQY ENCSR000EDD Signal bigWig HeLa-S3 TBP ENCSR000EDD signal 2 1058 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/40491c2c-5408-4263-b106-19d70620408f/ENCFF613AQY.bigWig\ color 186,111,165\ longLabel HeLa-S3 TBP ENCSR000EDD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDD Signal\ track wgEncodeReg4TfChip_ENCFF613AQY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF829QZW ENCSR068HEE Signal bigWig Left ventricle myocardium inferior tissue male adult 60 years CTCF signal 2 1058 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/8cc7d27e-f4c8-40ad-a781-2600a05804d2/ENCFF829QZW.bigWig\ color 0,176,240\ longLabel Left ventricle myocardium inferior tissue male adult 60 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068HEE Signal\ track wgEncodeReg4Epigenetics_ENCFF829QZW\ type bigWig\ visibility full\ encTfChipPkENCFF218LOB lungFibro CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF218LOB) 0 1058 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_lung from ENCODE 3 (ENCFF218LOB)\ parent encTfChipPk off\ shortLabel lungFibro CTCF 2\ subGroups cellType=fibroblast_of_lung factor=CTCF\ track encTfChipPkENCFF218LOB\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse 0 1058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse 1 1058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor2.CNhs14573.13483-145A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor2_CNhs14573_13483-145A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13483-145A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor2_CNhs14573_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13483-145A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF775CHI ENCSR000EDE Peak bigBed 5 HeLa-S3 RAD21 peaks 4 1059 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/75732350-019f-462e-8b3f-b99632b191f2/ENCFF775CHI.bigBed\ labelFields none\ longLabel HeLa-S3 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF775CHI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF065ORX ENCSR068KDQ Peak bigBed 5 Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell DNase peak 4 1059 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/ce555077-21b7-420d-9cd5-790a248a0efd/ENCFF065ORX.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068KDQ Peak\ track wgEncodeReg4Epigenetics_ENCFF065ORX\ type bigBed 5\ visibility squish\ encTfChipPkENCFF196CRQ mamryGlFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_mammary_gland from ENCODE 3 (ENCFF196CRQ) 0 1059 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_mammary_gland from ENCODE 3 (ENCFF196CRQ)\ parent encTfChipPk off\ shortLabel mamryGlFibro CTCF\ subGroups cellType=fibroblast_of_mammary_gland factor=CTCF\ track encTfChipPkENCFF196CRQ\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward 0 1059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward 1 1059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF357XMG ENCSR000EDE Signal bigWig HeLa-S3 RAD21 ENCSR000EDE signal 2 1060 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/d8d9b524-19eb-47f1-bba3-e9f23a32796a/ENCFF357XMG.bigWig\ color 186,111,165\ longLabel HeLa-S3 RAD21 ENCSR000EDE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDE Signal\ track wgEncodeReg4TfChip_ENCFF357XMG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF086RNS ENCSR068KDQ Signal bigWig Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell DNase signal 2 1060 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/c89e4546-1b42-4049-8cc6-74e8751ff6dc/ENCFF086RNS.bigWig\ color 6,218,147\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068KDQ Signal\ track wgEncodeReg4Epigenetics_ENCFF086RNS\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward 0 1060 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_fwd MyoblastToMyotubes_Day06D3+ bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward 1 1060 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF093QTY plArtryFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_pulmonary_artery from ENCODE 3 (ENCFF093QTY) 0 1060 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_pulmonary_artery from ENCODE 3 (ENCFF093QTY)\ parent encTfChipPk off\ shortLabel plArtryFibro CTCF\ subGroups cellType=fibroblast_of_pulmonary_artery factor=CTCF\ track encTfChipPkENCFF093QTY\ encTfChipPkENCFF322FBH aortaAdFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_the_aortic_adventitia from ENCODE 3 (ENCFF322FBH) 0 1061 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_the_aortic_adventitia from ENCODE 3 (ENCFF322FBH)\ parent encTfChipPk off\ shortLabel aortaAdFibro CTCF\ subGroups cellType=fibroblast_of_the_aortic_adventitia factor=CTCF\ track encTfChipPkENCFF322FBH\ wgEncodeReg4TfChip_ENCFF506FET ENCSR000EDF Peak bigBed 5 HeLa-S3 IRF3 peaks 4 1061 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/9b6b502f-f309-4a25-9d71-140f319025dd/ENCFF506FET.bigBed\ labelFields none\ longLabel HeLa-S3 IRF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF506FET\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644KUV ENCSR068ZVD Peak bigBed 5 GM23338 H3K4me3 peak 4 1061 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/3ddb0147-cf71-4141-a865-a96640868ce2/ENCFF644KUV.bigBed\ color 255,0,0\ longLabel GM23338 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068ZVD Peak\ track wgEncodeReg4Epigenetics_ENCFF644KUV\ type bigBed 5\ visibility squish\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse 0 1061 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse 1 1061 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF411IEL ENCSR000EDF Signal bigWig HeLa-S3 IRF3 ENCSR000EDF signal 2 1062 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/cddc314e-d1e7-4195-988e-e6025b44ab46/ENCFF411IEL.bigWig\ color 186,111,165\ longLabel HeLa-S3 IRF3 ENCSR000EDF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDF Signal\ track wgEncodeReg4TfChip_ENCFF411IEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF494ASH ENCSR068ZVD Signal bigWig GM23338 H3K4me3 signal 2 1062 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/8f7f6ef6-8232-4dc9-bb1c-e8466847c064/ENCFF494ASH.bigWig\ color 255,0,0\ longLabel GM23338 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR068ZVD Signal\ track wgEncodeReg4Epigenetics_ENCFF494ASH\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse 0 1062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14610.13519-145E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor3_CNhs14610_13519-145E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13519-145E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor3_CNhs14610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13519-145E9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_rev MyoblastToMyotubes_Day06D3- bigWig Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse 1 1062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20control%20donor3.CNhs14582.13492-145B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, control donor3_CNhs14582_13492-145B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13492-145B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay06ControlDonor3_CNhs14582_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13492-145B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF032BJW vlMesenFibro CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_villous_mesenchyme from ENCODE 3 (ENCFF032BJW) 0 1062 255 184 85 255 219 170 0 0 0 regulation 1 color 255,184,85\ longLabel Transcription Factor ChIP-seq Peaks of CTCF in fibroblast_of_villous_mesenchyme from ENCODE 3 (ENCFF032BJW)\ parent encTfChipPk off\ shortLabel vlMesenFibro CTCF\ subGroups cellType=fibroblast_of_villous_mesenchyme factor=CTCF\ track encTfChipPkENCFF032BJW\ wgEncodeReg4TfChip_ENCFF668QVP ENCSR000EDG Peak bigBed 5 HeLa-S3 JUN peaks 4 1063 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/7e44c29f-8b0d-472c-b53b-11544577694e/ENCFF668QVP.bigBed\ labelFields none\ longLabel HeLa-S3 JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF668QVP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF987VHI ENCSR069EGE Peak bigBed 5 Transverse colon tissue male adult 54 years H3K27ac peak 4 1063 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/2c50b098-591e-4917-9fa7-8d2d19daeea7/ENCFF987VHI.bigBed\ color 181,145,0\ longLabel Transverse colon tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069EGE Peak\ track wgEncodeReg4Epigenetics_ENCFF987VHI\ type bigBed 5\ visibility squish\ encTfChipPkENCFF178FRI frsknFibro CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF178FRI) 0 1063 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF178FRI)\ parent encTfChipPk off\ shortLabel frsknFibro CTCF 1\ subGroups cellType=foreskin_fibroblast factor=CTCF\ track encTfChipPkENCFF178FRI\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward 0 1063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward 1 1063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF245VLB ENCSR000EDG Signal bigWig HeLa-S3 JUN ENCSR000EDG signal 2 1064 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/a6c07e0b-7dca-40a4-b13c-3466f7eb2ea0/ENCFF245VLB.bigWig\ color 186,111,165\ longLabel HeLa-S3 JUN ENCSR000EDG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDG Signal\ track wgEncodeReg4TfChip_ENCFF245VLB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF427MZX ENCSR069EGE Signal bigWig Transverse colon tissue male adult 54 years H3K27ac signal 2 1064 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/b54d8d03-f0cf-44ca-bc56-1b38a591b447/ENCFF427MZX.bigWig\ color 181,145,0\ longLabel Transverse colon tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069EGE Signal\ track wgEncodeReg4Epigenetics_ENCFF427MZX\ type bigWig\ visibility full\ encTfChipPkENCFF273NIW frsknFibro CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF273NIW) 0 1064 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_fibroblast from ENCODE 3 (ENCFF273NIW)\ parent encTfChipPk off\ shortLabel frsknFibro CTCF 2\ subGroups cellType=foreskin_fibroblast factor=CTCF\ track encTfChipPkENCFF273NIW\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward 0 1064 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_fwd MyoblastToMyotubes_Day08D1+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward 1 1064 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF642OHL ENCSR000EDH Peak bigBed 5 HeLa-S3 JUND peaks 4 1065 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/01c64565-df88-4d1d-9ed9-1bbf03aab307/ENCFF642OHL.bigBed\ labelFields none\ longLabel HeLa-S3 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF642OHL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF217XUC ENCSR069ICJ Peak bigBed 5 Suppressor macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase peak 4 1065 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/50ad769b-4ef1-440d-8e77-532d072f1899/ENCFF217XUC.bigBed\ color 6,218,147\ labelFields none\ longLabel Suppressor macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069ICJ Peak\ track wgEncodeReg4Epigenetics_ENCFF217XUC\ type bigBed 5\ visibility squish\ encTfChipPkENCFF349RNE frskinKrtn CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF349RNE) 0 1065 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF349RNE)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 1\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF349RNE\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse 0 1065 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse 1 1065 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF687DOT ENCSR000EDH Signal bigWig HeLa-S3 JUND ENCSR000EDH signal 2 1066 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/9e333f0b-1635-43e5-ad43-5d804419371d/ENCFF687DOT.bigWig\ color 186,111,165\ longLabel HeLa-S3 JUND ENCSR000EDH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDH Signal\ track wgEncodeReg4TfChip_ENCFF687DOT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF255BJE ENCSR069ICJ Signal bigWig Suppressor macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase signal 2 1066 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/24b7742b-ccd2-48c5-8e7e-63071b2a339b/ENCFF255BJE.bigWig\ color 6,218,147\ longLabel Suppressor macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069ICJ Signal\ track wgEncodeReg4Epigenetics_ENCFF255BJE\ type bigWig\ visibility full\ encTfChipPkENCFF236RJT frskinKrtn CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF236RJT) 0 1066 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF236RJT)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 2\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF236RJT\ MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse 0 1066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor1.CNhs13853.13475-145A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor1_CNhs13853_13475-145A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13475-145A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor1_CNhs13853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13475-145A1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_rev MyoblastToMyotubes_Day08D1- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse 1 1066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14592.13502-145D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor1_CNhs14592_13502-145D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13502-145D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor1_CNhs14592_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13502-145D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF346WLN ENCSR000EDJ Peak bigBed 5 HeLa-S3 NRF1 peaks 4 1067 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/6d128167-46a6-4de7-aaa6-99e517ab2650/ENCFF346WLN.bigBed\ labelFields none\ longLabel HeLa-S3 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF346WLN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF347SRC ENCSR069KMA Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak 4 1067 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/14308368-0f89-4467-90da-79a7e0b55a85/ENCFF347SRC.bigBed\ color 255,0,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069KMA Peak\ track wgEncodeReg4Epigenetics_ENCFF347SRC\ type bigBed 5\ visibility squish\ encTfChipPkENCFF060WTK frskinKrtn CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF060WTK) 0 1067 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in foreskin_keratinocyte from ENCODE 3 (ENCFF060WTK)\ parent encTfChipPk off\ shortLabel frskinKrtn CTCF 3\ subGroups cellType=foreskin_keratinocyte factor=CTCF\ track encTfChipPkENCFF060WTK\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward 0 1067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward 1 1067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF558WGC ENCSR000EDJ Signal bigWig HeLa-S3 NRF1 ENCSR000EDJ signal 2 1068 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/105129d8-5442-4d69-9b7b-79bbf7d162dd/ENCFF558WGC.bigWig\ color 186,111,165\ longLabel HeLa-S3 NRF1 ENCSR000EDJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDJ Signal\ track wgEncodeReg4TfChip_ENCFF558WGC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF440EMT ENCSR069KMA Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal 2 1068 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/2cc401d0-2fd3-4542-a05a-cc9d54d20d9c/ENCFF440EMT.bigWig\ color 255,0,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069KMA Signal\ track wgEncodeReg4Epigenetics_ENCFF440EMT\ type bigWig\ visibility full\ encTfChipPkENCFF281XHU gastrocMed CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF281XHU) 0 1068 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF281XHU)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 1\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF281XHU\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward 0 1068 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_fwd MyoblastToMyotubes_Day08D2+ bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward 1 1068 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF733PLR ENCSR000EDK Peak bigBed 5 HeLa-S3 SMARCB1 peaks 4 1069 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4edc1baa-93c0-4942-ba02-58eb1741f1e2/ENCFF733PLR.bigBed\ labelFields none\ longLabel HeLa-S3 SMARCB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF733PLR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF064ILN ENCSR069UMW Peak bigBed 5 Ascending aorta tissue female adult 53 years H3K27ac peak 4 1069 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/41280f7a-dd7e-44bf-9941-775cb0ef3991/ENCFF064ILN.bigBed\ color 181,145,0\ longLabel Ascending aorta tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069UMW Peak\ track wgEncodeReg4Epigenetics_ENCFF064ILN\ type bigBed 5\ visibility squish\ encTfChipPkENCFF016OGE gastrocMed CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF016OGE) 0 1069 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF016OGE)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 2\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF016OGE\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse 0 1069 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse 1 1069 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF805DTS ENCSR000EDK Signal bigWig HeLa-S3 SMARCB1 ENCSR000EDK signal 2 1070 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/ca7c91eb-85a0-4cf5-8fa5-aa13be503dee/ENCFF805DTS.bigWig\ color 186,111,165\ longLabel HeLa-S3 SMARCB1 ENCSR000EDK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDK Signal\ track wgEncodeReg4TfChip_ENCFF805DTS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF118EKX ENCSR069UMW Signal bigWig Ascending aorta tissue female adult 53 years H3K27ac signal 2 1070 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/c03b639a-05eb-4652-b0c8-0913cdcb21c3/ENCFF118EKX.bigWig\ color 181,145,0\ longLabel Ascending aorta tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR069UMW Signal\ track wgEncodeReg4Epigenetics_ENCFF118EKX\ type bigWig\ visibility full\ encTfChipPkENCFF100SKI gastrocMed CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF100SKI) 0 1070 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastrocnemius_medialis from ENCODE 3 (ENCFF100SKI)\ parent encTfChipPk off\ shortLabel gastrocMed CTCF 3\ subGroups cellType=gastrocnemius_medialis factor=CTCF\ track encTfChipPkENCFF100SKI\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse 0 1070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14602.13511-145E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor2_CNhs14602_13511-145E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13511-145E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor2_CNhs14602_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13511-145E1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_rev MyoblastToMyotubes_Day08D2- bigWig Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse 1 1070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor2.CNhs14574.13484-145B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor2_CNhs14574_13484-145B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13484-145B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor2_CNhs14574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13484-145B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF313RPK ENCSR000EDL Peak bigBed 5 HeLa-S3 SMARCC2 peaks 4 1071 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/e864157d-9024-4797-8979-252cb01d34d9/ENCFF313RPK.bigBed\ labelFields none\ longLabel HeLa-S3 SMARCC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF313RPK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF955CBD ENCSR070AET Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K4me3 peak 4 1071 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/99ba76e0-a8b4-4720-b22f-42adf923932e/ENCFF955CBD.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR070AET Peak\ track wgEncodeReg4Epigenetics_ENCFF955CBD\ type bigBed 5\ visibility squish\ encTfChipPkENCFF089XKW gstrcMed POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF089XKW) 0 1071 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF089XKW)\ parent encTfChipPk off\ shortLabel gstrcMed POLR2A 1\ subGroups cellType=gastrocnemius_medialis factor=POLR2A\ track encTfChipPkENCFF089XKW\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward 0 1071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward 1 1071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF748FEL ENCSR000EDL Signal bigWig HeLa-S3 SMARCC2 ENCSR000EDL signal 2 1072 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/21eb3410-44e2-4f0d-b515-14775b61c414/ENCFF748FEL.bigWig\ color 186,111,165\ longLabel HeLa-S3 SMARCC2 ENCSR000EDL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDL Signal\ track wgEncodeReg4TfChip_ENCFF748FEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF274VIH ENCSR070AET Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K4me3 signal 2 1072 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/83ce959e-7635-4f67-9480-e9de8ee080e2/ENCFF274VIH.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR070AET Signal\ track wgEncodeReg4Epigenetics_ENCFF274VIH\ type bigWig\ visibility full\ encTfChipPkENCFF227YCI gstrcMed POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF227YCI) 0 1072 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastrocnemius_medialis from ENCODE 3 (ENCFF227YCI)\ parent encTfChipPk off\ shortLabel gstrcMed POLR2A 2\ subGroups cellType=gastrocnemius_medialis factor=POLR2A\ track encTfChipPkENCFF227YCI\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward 0 1072 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_fwd MyoblastToMyotubes_Day08D3+ bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward 1 1072 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF971JGA ENCSR000EDM Peak bigBed 5 HeLa-S3 SMARCC1 peaks 4 1073 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/09e95430-5cd4-4346-8c09-8e797c4426c4/ENCFF971JGA.bigBed\ labelFields none\ longLabel HeLa-S3 SMARCC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF971JGA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF982UYZ ENCSR070CMW Peak bigBed 5 Heart left ventricle tissue female adult 53 years DNase peak 4 1073 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/5651afa8-ba0f-4418-a2c2-11965c3e235f/ENCFF982UYZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart left ventricle tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR070CMW Peak\ track wgEncodeReg4Epigenetics_ENCFF982UYZ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF973KKY gstEsphSph CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF973KKY) 0 1073 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF973KKY)\ parent encTfChipPk off\ shortLabel gstEsphSph CTCF 1\ subGroups cellType=gastroesophageal_sphincter factor=CTCF\ track encTfChipPkENCFF973KKY\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse 0 1073 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse 1 1073 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14611.13520-145F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, Duchenne Muscular Dystrophy donor3_CNhs14611_13520-145F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13520-145F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08DuchenneMuscularDystrophyDonor3_CNhs14611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13520-145F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF295CGX ENCSR000EDM Signal bigWig HeLa-S3 SMARCC1 ENCSR000EDM signal 2 1074 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7b9c5af4-c251-4e2b-b155-9f049fc92d7c/ENCFF295CGX.bigWig\ color 186,111,165\ longLabel HeLa-S3 SMARCC1 ENCSR000EDM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDM Signal\ track wgEncodeReg4TfChip_ENCFF295CGX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF417JSF ENCSR070CMW Signal bigWig Heart left ventricle tissue female adult 53 years DNase signal 2 1074 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/fc8b9403-1da8-4c3c-97b8-efb240fa1d50/ENCFF417JSF.bigWig\ color 6,218,147\ longLabel Heart left ventricle tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR070CMW Signal\ track wgEncodeReg4Epigenetics_ENCFF417JSF\ type bigWig\ visibility full\ encTfChipPkENCFF951SRP gstEsphSph CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF951SRP) 0 1074 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in gastroesophageal_sphincter from ENCODE 3 (ENCFF951SRP)\ parent encTfChipPk off\ shortLabel gstEsphSph CTCF 2\ subGroups cellType=gastroesophageal_sphincter factor=CTCF\ track encTfChipPkENCFF951SRP\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse 0 1074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_rev MyoblastToMyotubes_Day08D3- bigWig Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse 1 1074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day08%2c%20control%20donor3.CNhs14583.13493-145C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day08, control donor3_CNhs14583_13493-145C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13493-145C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day08D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay08ControlDonor3_CNhs14583_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13493-145C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF867JNL ENCSR000EDN Peak bigBed 5 HepG2 MAZ peaks 4 1075 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/b3012be2-f8b3-4248-b6cf-305b83db5149/ENCFF867JNL.bigBed\ labelFields none\ longLabel HepG2 MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF867JNL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF171KEL ENCSR071SPR Peak bigBed 5 Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K4me3 peak 4 1075 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/27/a07ab629-9183-496f-a1b0-35387cff4071/ENCFF171KEL.bigBed\ color 255,0,0\ longLabel Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR071SPR Peak\ track wgEncodeReg4Epigenetics_ENCFF171KEL\ type bigBed 5\ visibility squish\ encTfChipPkENCFF992XPI gsEsphSph EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF992XPI) 0 1075 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF992XPI)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 1\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF992XPI\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward 0 1075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward 1 1075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF498TSJ ENCSR000EDN Signal bigWig HepG2 MAZ ENCSR000EDN signal 2 1076 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/b36434fc-6cdc-43d9-ac99-bc1fbcf2547e/ENCFF498TSJ.bigWig\ color 137,152,82\ longLabel HepG2 MAZ ENCSR000EDN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDN Signal\ track wgEncodeReg4TfChip_ENCFF498TSJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF550VYP ENCSR071SPR Signal bigWig Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K4me3 signal 2 1076 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a4a33c37-59a0-4402-872c-aa7ae121785c/ENCFF550VYP.bigWig\ color 255,0,0\ longLabel Nephron organoid female embryo 5 days, 21 days post differentiation originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR071SPR Signal\ track wgEncodeReg4Epigenetics_ENCFF550VYP\ type bigWig\ visibility full\ encTfChipPkENCFF481USU gsEsphSph EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF481USU) 0 1076 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF481USU)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 2\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF481USU\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward 0 1076 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_fwd MyoblastToMyotubes_Day10D1+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward 1 1076 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF122GLS ENCSR000EDP Peak bigBed 5 HepG2 ARID3A peaks 4 1077 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/471ec943-165d-4027-9f56-fccece7e665f/ENCFF122GLS.bigBed\ labelFields none\ longLabel HepG2 ARID3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF122GLS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF455ESK ENCSR072EUE Peak bigBed 5 OCI-LY1 CTCF peak 4 1077 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/28383861-6501-440f-a3de-4559ff36db0c/ENCFF455ESK.bigBed\ color 0,176,240\ labelFields none\ longLabel OCI-LY1 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072EUE Peak\ track wgEncodeReg4Epigenetics_ENCFF455ESK\ type bigBed 5\ visibility squish\ encTfChipPkENCFF291RDN gsEsphSph EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF291RDN) 0 1077 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in gastroesophageal_sphincter from ENCODE 3 (ENCFF291RDN)\ parent encTfChipPk off\ shortLabel gsEsphSph EP300 3\ subGroups cellType=gastroesophageal_sphincter factor=EP300\ track encTfChipPkENCFF291RDN\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse 0 1077 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse 1 1077 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor1.CNhs13854.13476-145A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor1_CNhs13854_13476-145A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13476-145A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor1_CNhs13854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13476-145A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF824CWV ENCSR000EDP Signal bigWig HepG2 ARID3A ENCSR000EDP signal 2 1078 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/a079a472-d3e7-4112-b5c5-a3013d918c41/ENCFF824CWV.bigWig\ color 137,152,82\ longLabel HepG2 ARID3A ENCSR000EDP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDP Signal\ track wgEncodeReg4TfChip_ENCFF824CWV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF231ZBE ENCSR072EUE Signal bigWig OCI-LY1 CTCF signal 2 1078 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a458e7d4-6cfd-4ce9-af3e-081a66471c7c/ENCFF231ZBE.bigWig\ color 0,176,240\ longLabel OCI-LY1 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072EUE Signal\ track wgEncodeReg4Epigenetics_ENCFF231ZBE\ type bigWig\ visibility full\ encTfChipPkENCFF835VAP gEsphSph POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF835VAP) 0 1078 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF835VAP)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 1\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF835VAP\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse 0 1078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_rev MyoblastToMyotubes_Day10D1- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse 1 1078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14594.13503-145D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor1_CNhs14594_13503-145D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13503-145D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor1_CNhs14594_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13503-145D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF418AQX ENCSR000EDQ Peak bigBed 5 HepG2 RCOR1 peaks 4 1079 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/debdfbc6-ff7d-4ca4-85c7-c7c3a838c364/ENCFF418AQX.bigBed\ labelFields none\ longLabel HepG2 RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF418AQX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF146XSY ENCSR072NBR Peak bigBed 5 Muscle of back tissue female embryo 98 days DNase peak 4 1079 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/7be489a8-3d54-4380-b26c-1efdc9d93dd8/ENCFF146XSY.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072NBR Peak\ track wgEncodeReg4Epigenetics_ENCFF146XSY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF128UUT gEsphSph POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF128UUT) 0 1079 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF128UUT)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 2\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF128UUT\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward 0 1079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward 1 1079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF872ATT ENCSR000EDQ Signal bigWig HepG2 RCOR1 ENCSR000EDQ signal 2 1080 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8b99a9ec-67b9-436f-9490-d77610ca538d/ENCFF872ATT.bigWig\ color 137,152,82\ longLabel HepG2 RCOR1 ENCSR000EDQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDQ Signal\ track wgEncodeReg4TfChip_ENCFF872ATT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF188VFM ENCSR072NBR Signal bigWig Muscle of back tissue female embryo 98 days DNase signal 2 1080 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/c7b1c860-f44d-4e97-8c6c-aa034906ed66/ENCFF188VFM.bigWig\ color 6,218,147\ longLabel Muscle of back tissue female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072NBR Signal\ track wgEncodeReg4Epigenetics_ENCFF188VFM\ type bigWig\ visibility full\ encTfChipPkENCFF530FGP gEsphSph POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF530FGP) 0 1080 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in gastroesophageal_sphincter from ENCODE 3 (ENCFF530FGP)\ parent encTfChipPk off\ shortLabel gEsphSph POLR2A 3\ subGroups cellType=gastroesophageal_sphincter factor=POLR2A\ track encTfChipPkENCFF530FGP\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward 0 1080 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_fwd MyoblastToMyotubes_Day10D2+ bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward 1 1080 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF102SKR ENCSR000EDS Peak bigBed 5 HepG2 MAX peaks 4 1081 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/c0e19eb5-1cca-4f0f-a333-ff5c406de485/ENCFF102SKR.bigBed\ labelFields none\ longLabel HepG2 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF102SKR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF794NJE ENCSR072ORU Peak bigBed 5 Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours 4 1081 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/5eabd29c-483c-486e-85ad-747f064e096b/ENCFF794NJE.bigBed\ color 255,0,0\ longLabel Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072ORU Peak\ track wgEncodeReg4Epigenetics_ENCFF794NJE\ type bigBed 5\ visibility squish\ encTfChipPkENCFF552XDP heartLftVent CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in heart_left_ventricle from ENCODE 3 (ENCFF552XDP) 0 1081 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in heart_left_ventricle from ENCODE 3 (ENCFF552XDP)\ parent encTfChipPk off\ shortLabel heartLftVent CTCF\ subGroups cellType=heart_left_ventricle factor=CTCF\ track encTfChipPkENCFF552XDP\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse 0 1081 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse 1 1081 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14603.13512-145E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor2_CNhs14603_13512-145E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13512-145E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor2_CNhs14603_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13512-145E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF409MFO ENCSR000EDS Signal bigWig HepG2 MAX ENCSR000EDS signal 2 1082 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/62257525-d5d7-4926-9fef-0672a1ee64ad/ENCFF409MFO.bigWig\ color 137,152,82\ longLabel HepG2 MAX ENCSR000EDS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDS Signal\ track wgEncodeReg4TfChip_ENCFF409MFO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF320MFJ ENCSR072ORU Signal bigWig Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours 2 1082 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/5d1f4a75-55e0-4a4d-b8bf-fc5ece7995fd/ENCFF320MFJ.bigWig\ color 255,0,0\ longLabel Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072ORU Signal\ track wgEncodeReg4Epigenetics_ENCFF320MFJ\ type bigWig\ visibility full\ encTfChipPkENCFF156SPI hrtLfVnt POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF156SPI) 0 1082 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF156SPI)\ parent encTfChipPk off\ shortLabel hrtLfVnt POLR2A 1\ subGroups cellType=heart_left_ventricle factor=POLR2A\ track encTfChipPkENCFF156SPI\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse 0 1082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_rev MyoblastToMyotubes_Day10D2- bigWig Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse 1 1082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor2.CNhs14575.13485-145B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor2_CNhs14575_13485-145B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13485-145B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor2_CNhs14575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13485-145B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF961RID ENCSR000EDT Peak bigBed 5 HepG2 BHLHE40 peaks 4 1083 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/9e0766fe-b2ac-4fce-82f2-69874f6e6d8a/ENCFF961RID.bigBed\ labelFields none\ longLabel HepG2 BHLHE40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF961RID\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF892DCS ENCSR072UYN Peak bigBed 5 Sciatic nerve tissue female child 16 years ATAC peak 4 1083 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/6d04e4bf-af22-4aef-8f2b-7bb36f898432/ENCFF892DCS.bigBed\ color 2,199,185\ longLabel Sciatic nerve tissue female child 16 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072UYN Peak\ track wgEncodeReg4Epigenetics_ENCFF892DCS\ type bigBed 5\ visibility squish\ encTfChipPkENCFF226GKH hrtLfVnt POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF226GKH) 0 1083 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in heart_left_ventricle from ENCODE 3 (ENCFF226GKH)\ parent encTfChipPk off\ shortLabel hrtLfVnt POLR2A 2\ subGroups cellType=heart_left_ventricle factor=POLR2A\ track encTfChipPkENCFF226GKH\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward 0 1083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward 1 1083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF790BGS ENCSR000EDT Signal bigWig HepG2 BHLHE40 ENCSR000EDT signal 2 1084 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/96913149-91ac-4652-8d3f-2e929f83517d/ENCFF790BGS.bigWig\ color 137,152,82\ longLabel HepG2 BHLHE40 ENCSR000EDT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDT Signal\ track wgEncodeReg4TfChip_ENCFF790BGS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF737OOY ENCSR072UYN Signal bigWig Sciatic nerve tissue female child 16 years ATAC signal 2 1084 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/1397622d-c888-4923-8daa-a57dccf159a8/ENCFF737OOY.bigWig\ color 2,199,185\ longLabel Sciatic nerve tissue female child 16 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR072UYN Signal\ track wgEncodeReg4Epigenetics_ENCFF737OOY\ type bigWig\ visibility full\ encTfChipPkENCFF846FYU hepatocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in hepatocyte from ENCODE 3 (ENCFF846FYU) 0 1084 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in hepatocyte from ENCODE 3 (ENCFF846FYU)\ parent encTfChipPk off\ shortLabel hepatocyte CTCF\ subGroups cellType=hepatocyte factor=CTCF\ track encTfChipPkENCFF846FYU\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse 0 1084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse 1 1084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14612.13521-145F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, Duchenne Muscular Dystrophy donor3_CNhs14612_13521-145F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13521-145F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay10DuchenneMuscularDystrophyDonor3_CNhs14612_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13521-145F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF493ITN ENCSR000EDU Peak bigBed 5 HepG2 MXI1 peaks 4 1085 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/82ae886b-7dda-45aa-8e36-a7ff0766f479/ENCFF493ITN.bigBed\ labelFields none\ longLabel HepG2 MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF493ITN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF851XUX ENCSR073BPG Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 83 years CTCF peak 4 1085 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/b2cba4ad-fb44-49d0-a59a-252aa1613e65/ENCFF851XUX.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 83 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR073BPG Peak\ track wgEncodeReg4Epigenetics_ENCFF851XUX\ type bigBed 5\ visibility squish\ encTfChipPkENCFF324UNA hepatocyte EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in hepatocyte from ENCODE 3 (ENCFF324UNA) 0 1085 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in hepatocyte from ENCODE 3 (ENCFF324UNA)\ parent encTfChipPk off\ shortLabel hepatocyte EZH2\ subGroups cellType=hepatocyte factor=EZH2\ track encTfChipPkENCFF324UNA\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward 0 1085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward 1 1085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF169TID ENCSR000EDU Signal bigWig HepG2 MXI1 ENCSR000EDU signal 2 1086 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/f81d415f-e6e6-4537-bd6c-cbaad08bb357/ENCFF169TID.bigWig\ color 137,152,82\ longLabel HepG2 MXI1 ENCSR000EDU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDU Signal\ track wgEncodeReg4TfChip_ENCFF169TID\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF884MZR ENCSR073BPG Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 83 years CTCF signal 2 1086 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/0c58e1ec-a9ec-4401-846b-301557dff0d4/ENCFF884MZR.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 83 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR073BPG Signal\ track wgEncodeReg4Epigenetics_ENCFF884MZR\ type bigWig\ visibility full\ encTfChipPkENCFF028IIR keratinocyte CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in keratinocyte from ENCODE 3 (ENCFF028IIR) 0 1086 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in keratinocyte from ENCODE 3 (ENCFF028IIR)\ parent encTfChipPk off\ shortLabel keratinocyte CTCF\ subGroups cellType=keratinocyte factor=CTCF\ track encTfChipPkENCFF028IIR\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward 0 1086 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_fwd MyoblastToMyotubes_Day12D1+ bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward 1 1086 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF251RXO ENCSR000EDV Peak bigBed 5 HepG2 EP300 peaks 4 1087 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5bd4884f-cd61-4af8-8513-7c23964a0a6f/ENCFF251RXO.bigBed\ labelFields none\ longLabel HepG2 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF251RXO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF682KYB ENCSR073ORI Peak bigBed 5 T-cell female adult 21 years H3K4me3 peak 4 1087 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/32d0fd78-be69-4872-b530-53149c7f015e/ENCFF682KYB.bigBed\ color 255,0,0\ longLabel T-cell female adult 21 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR073ORI Peak\ track wgEncodeReg4Epigenetics_ENCFF682KYB\ type bigBed 5\ visibility squish\ encTfChipPkENCFF674KUN kidneyEpith CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in kidney_epithelial_cell from ENCODE 3 (ENCFF674KUN) 0 1087 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in kidney_epithelial_cell from ENCODE 3 (ENCFF674KUN)\ parent encTfChipPk off\ shortLabel kidneyEpith CTCF\ subGroups cellType=kidney_epithelial_cell factor=CTCF\ track encTfChipPkENCFF674KUN\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse 0 1087 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse 1 1087 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor1.CNhs14595.13504-145D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor1_CNhs14595_13504-145D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13504-145D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor1_CNhs14595_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13504-145D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF334OTF ENCSR000EDV Signal bigWig HepG2 EP300 ENCSR000EDV signal 2 1088 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/252603dd-cacf-4b00-8253-cfae9118f2b2/ENCFF334OTF.bigWig\ color 137,152,82\ longLabel HepG2 EP300 ENCSR000EDV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDV Signal\ track wgEncodeReg4TfChip_ENCFF334OTF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF560YNU ENCSR073ORI Signal bigWig T-cell female adult 21 years H3K4me3 signal 2 1088 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/4a78ad04-3afb-4933-91e7-4f9ad8e29115/ENCFF560YNU.bigWig\ color 255,0,0\ longLabel T-cell female adult 21 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR073ORI Signal\ track wgEncodeReg4Epigenetics_ENCFF560YNU\ type bigWig\ visibility full\ encTfChipPkENCFF782SGI liver ATF3 1 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF782SGI) 0 1088 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF782SGI)\ parent encTfChipPk off\ shortLabel liver ATF3 1\ subGroups cellType=liver factor=ATF3\ track encTfChipPkENCFF782SGI\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse 0 1088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_rev MyoblastToMyotubes_Day12D1- bigWig Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse 1 1088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor1.CNhs14566.13477-145A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor1_CNhs14566_13477-145A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13477-145A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D1-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor1_CNhs14566_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13477-145A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF745UAV ENCSR000EDW Peak bigBed 5 HepG2 SMC3 peaks 4 1089 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/e8f50578-f1a0-45cd-a33f-2c32af7d9a99/ENCFF745UAV.bigBed\ labelFields none\ longLabel HepG2 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF745UAV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF534UGM ENCSR073TPC Peak bigBed 5 Esophagus muscularis mucosa tissue male adult 54 years CTCF peak 4 1089 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/bcd1175b-0fdc-487c-8c69-a7afca7feaaa/ENCFF534UGM.bigBed\ color 0,176,240\ labelFields none\ longLabel Esophagus muscularis mucosa tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR073TPC Peak\ track wgEncodeReg4Epigenetics_ENCFF534UGM\ type bigBed 5\ visibility squish\ encTfChipPkENCFF146URA liver ATF3 2 narrowPeak Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF146URA) 0 1089 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ATF3 in liver from ENCODE 3 (ENCFF146URA)\ parent encTfChipPk off\ shortLabel liver ATF3 2\ subGroups cellType=liver factor=ATF3\ track encTfChipPkENCFF146URA\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward 0 1089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward 1 1089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF803QEY ENCSR000EDW Signal bigWig HepG2 SMC3 ENCSR000EDW signal 2 1090 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/e6cf0149-c7ba-4fcb-9355-0fc2da51390e/ENCFF803QEY.bigWig\ color 137,152,82\ longLabel HepG2 SMC3 ENCSR000EDW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDW Signal\ track wgEncodeReg4TfChip_ENCFF803QEY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF648LZP ENCSR073TPC Signal bigWig Esophagus muscularis mucosa tissue male adult 54 years CTCF signal 2 1090 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e958762b-1bd8-4468-90e9-90e91f83aad4/ENCFF648LZP.bigWig\ color 0,176,240\ longLabel Esophagus muscularis mucosa tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR073TPC Signal\ track wgEncodeReg4Epigenetics_ENCFF648LZP\ type bigWig\ visibility full\ encTfChipPkENCFF143HEE liver CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in liver from ENCODE 3 (ENCFF143HEE) 0 1090 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in liver from ENCODE 3 (ENCFF143HEE)\ parent encTfChipPk off\ shortLabel liver CTCF\ subGroups cellType=liver factor=CTCF\ track encTfChipPkENCFF143HEE\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward 0 1090 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_fwd MyoblastToMyotubes_Day12D2+ bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward 1 1090 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF422YUC ENCSR000EDX Peak bigBed 5 HepG2 POLR2AphosphoS2 peaks 4 1091 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/0d93220a-5a25-42c9-bb6d-0bdb899a0213/ENCFF422YUC.bigBed\ labelFields none\ longLabel HepG2 POLR2AphosphoS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF422YUC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF547WGL ENCSR074BEW Peak bigBed 5 Basal cell carcinoma skin epidermis tissue male adult 67 years H3K4me3 peak 4 1091 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/3314ee6b-2435-4e49-91e9-e612d096074d/ENCFF547WGL.bigBed\ color 255,0,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 67 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074BEW Peak\ track wgEncodeReg4Epigenetics_ENCFF547WGL\ type bigBed 5\ visibility squish\ encTfChipPkENCFF808WST liver EGR1 1 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF808WST) 0 1091 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF808WST)\ parent encTfChipPk off\ shortLabel liver EGR1 1\ subGroups cellType=liver factor=EGR1\ track encTfChipPkENCFF808WST\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse 0 1091 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse 1 1091 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14604.13513-145E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor2_CNhs14604_13513-145E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13513-145E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor2_CNhs14604_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13513-145E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF940PKN ENCSR000EDX Signal bigWig HepG2 POLR2AphosphoS2 ENCSR000EDX signal 2 1092 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/419d56b6-482a-4322-a393-11b70024f3f8/ENCFF940PKN.bigWig\ color 137,152,82\ longLabel HepG2 POLR2AphosphoS2 ENCSR000EDX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDX Signal\ track wgEncodeReg4TfChip_ENCFF940PKN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF219ZRA ENCSR074BEW Signal bigWig Basal cell carcinoma skin epidermis tissue male adult 67 years H3K4me3 signal 2 1092 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/7b202d60-52f4-46ed-81a9-7ddd7ac3d3f1/ENCFF219ZRA.bigWig\ color 255,0,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 67 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074BEW Signal\ track wgEncodeReg4Epigenetics_ENCFF219ZRA\ type bigWig\ visibility full\ encTfChipPkENCFF617JQS liver EGR1 2 narrowPeak Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF617JQS) 0 1092 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EGR1 in liver from ENCODE 3 (ENCFF617JQS)\ parent encTfChipPk off\ shortLabel liver EGR1 2\ subGroups cellType=liver factor=EGR1\ track encTfChipPkENCFF617JQS\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse 0 1092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_rev MyoblastToMyotubes_Day12D2- bigWig Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse 1 1092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor2.CNhs14576.13486-145B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor2_CNhs14576_13486-145B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13486-145B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D2-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor2_CNhs14576_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13486-145B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF748DCX ENCSR000EDY Peak bigBed 5 HepG2 BRCA1 peaks 4 1093 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/ec6b0c7b-0627-413b-95d0-6c5d0e1c45a9/ENCFF748DCX.bigBed\ labelFields none\ longLabel HepG2 BRCA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF748DCX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF162OQJ ENCSR074ECR Peak bigBed 5 Right cardiac atrium tissue male adult 34 years H3K27ac peak 4 1093 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/08e58af7-ae30-452d-97f1-3f42f641e49a/ENCFF162OQJ.bigBed\ color 181,145,0\ longLabel Right cardiac atrium tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074ECR Peak\ track wgEncodeReg4Epigenetics_ENCFF162OQJ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF951VPZ liver FOXA1 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF951VPZ) 0 1093 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF951VPZ)\ parent encTfChipPk off\ shortLabel liver FOXA1 1\ subGroups cellType=liver factor=FOXA1\ track encTfChipPkENCFF951VPZ\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward 0 1093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward 1 1093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF698DLK ENCSR000EDY Signal bigWig HepG2 BRCA1 ENCSR000EDY signal 2 1094 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/891f7c0d-9824-4b22-9861-1904cb578ea4/ENCFF698DLK.bigWig\ color 137,152,82\ longLabel HepG2 BRCA1 ENCSR000EDY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDY Signal\ track wgEncodeReg4TfChip_ENCFF698DLK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF980FUE ENCSR074ECR Signal bigWig Right cardiac atrium tissue male adult 34 years H3K27ac signal 2 1094 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a2479cb1-4812-4f0a-b218-81519f65b144/ENCFF980FUE.bigWig\ color 181,145,0\ longLabel Right cardiac atrium tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074ECR Signal\ track wgEncodeReg4Epigenetics_ENCFF980FUE\ type bigWig\ visibility full\ encTfChipPkENCFF324QGE liver FOXA1 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF324QGE) 0 1094 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA1 in liver from ENCODE 3 (ENCFF324QGE)\ parent encTfChipPk off\ shortLabel liver FOXA1 2\ subGroups cellType=liver factor=FOXA1\ track encTfChipPkENCFF324QGE\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward 0 1094 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_fwd MyoblastToMyotubes_Day12D3+ bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward 1 1094 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3+\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=forward\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF767LDG ENCSR000EDZ Peak bigBed 5 HepG2 MAFK peaks 4 1095 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/b9176edf-f6e8-4c05-b401-0af2922766fd/ENCFF767LDG.bigBed\ labelFields none\ longLabel HepG2 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF767LDG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF589XMK ENCSR074FPH Peak bigBed 5 Placenta tissue male embryo 16 weeks H3K4me3 peak 4 1095 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/75794284-6082-478d-adef-85f75751def2/ENCFF589XMK.bigBed\ color 255,0,0\ longLabel Placenta tissue male embryo 16 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074FPH Peak\ track wgEncodeReg4Epigenetics_ENCFF589XMK\ type bigBed 5\ visibility squish\ encTfChipPkENCFF168JLI liver FOXA2 1 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF168JLI) 0 1095 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF168JLI)\ parent encTfChipPk off\ shortLabel liver FOXA2 1\ subGroups cellType=liver factor=FOXA2\ track encTfChipPkENCFF168JLI\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse 0 1095 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse 1 1095 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20control%20donor3.CNhs14585.13495-145C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, control donor3_CNhs14585_13495-145C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13495-145C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12ControlDonor3_CNhs14585_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13495-145C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF712FOK ENCSR000EDZ Signal bigWig HepG2 MAFK ENCSR000EDZ signal 2 1096 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/19e520e4-25c0-4a65-958d-f079a67f06a4/ENCFF712FOK.bigWig\ color 137,152,82\ longLabel HepG2 MAFK ENCSR000EDZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EDZ Signal\ track wgEncodeReg4TfChip_ENCFF712FOK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF120CVA ENCSR074FPH Signal bigWig Placenta tissue male embryo 16 weeks H3K4me3 signal 2 1096 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/1fa3d003-fedb-44b0-a330-98ac83682d3b/ENCFF120CVA.bigWig\ color 255,0,0\ longLabel Placenta tissue male embryo 16 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074FPH Signal\ track wgEncodeReg4Epigenetics_ENCFF120CVA\ type bigWig\ visibility full\ encTfChipPkENCFF293LRQ liver FOXA2 2 narrowPeak Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF293LRQ) 0 1096 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of FOXA2 in liver from ENCODE 3 (ENCFF293LRQ)\ parent encTfChipPk off\ shortLabel liver FOXA2 2\ subGroups cellType=liver factor=FOXA2\ track encTfChipPkENCFF293LRQ\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse 0 1096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_rev MyoblastToMyotubes_Day12D3- bigWig Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse 1 1096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day12%2c%20Duchenne%20Muscular%20Dystrophy%20donor3.CNhs14613.13522-145F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day12, Duchenne Muscular Dystrophy donor3_CNhs14613_13522-145F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13522-145F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day12D3-\ subGroups sequenceTech=hCAGE category=Myoblast_to_myotube_wt_and_DMD strand=reverse\ track MyoblastDifferentiationToMyotubesDay12DuchenneMuscularDystrophyDonor3_CNhs14613_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13522-145F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF065UQI ENCSR000EEA Peak bigBed 5 HepG2 RFX5 peaks 4 1097 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/01550e70-f64a-42ad-89f6-672314b10da4/ENCFF065UQI.bigBed\ labelFields none\ longLabel HepG2 RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF065UQI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF182PYY ENCSR074SFL Peak bigBed 5 Esophagus muscularis mucosa tissue female adult 53 years CTCF peak 4 1097 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1d55968a-7d5d-4326-ad03-5f00b6ff57d2/ENCFF182PYY.bigBed\ color 0,176,240\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074SFL Peak\ track wgEncodeReg4Epigenetics_ENCFF182PYY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF344XWK liver GABPA 1 narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF344XWK) 0 1097 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF344XWK)\ parent encTfChipPk off\ shortLabel liver GABPA 1\ subGroups cellType=liver factor=GABPA\ track encTfChipPkENCFF344XWK\ AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_fwd Tc:AdipoDiff_Day04D1+ bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward 0 1097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_fwd Tc:AdipoDiff_Day04D1+ bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward 1 1097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF418PFH ENCSR000EEA Signal bigWig HepG2 RFX5 ENCSR000EEA signal 2 1098 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/bd5ed521-d2a6-402e-b59b-2bf326b0c870/ENCFF418PFH.bigWig\ color 137,152,82\ longLabel HepG2 RFX5 ENCSR000EEA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEA Signal\ track wgEncodeReg4TfChip_ENCFF418PFH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF534LXF ENCSR074SFL Signal bigWig Esophagus muscularis mucosa tissue female adult 53 years CTCF signal 2 1098 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a9bd8ff9-c7f6-4ee3-87d5-771f682ca907/ENCFF534LXF.bigWig\ color 0,176,240\ longLabel Esophagus muscularis mucosa tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074SFL Signal\ track wgEncodeReg4Epigenetics_ENCFF534LXF\ type bigWig\ visibility full\ encTfChipPkENCFF280YAF liver GABPA 2 narrowPeak Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF280YAF) 0 1098 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of GABPA in liver from ENCODE 3 (ENCFF280YAF)\ parent encTfChipPk off\ shortLabel liver GABPA 2\ subGroups cellType=liver factor=GABPA\ track encTfChipPkENCFF280YAF\ AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_rev Tc:AdipoDiff_Day04D1- bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse 0 1098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_rev Tc:AdipoDiff_Day04D1- bigWig Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse 1 1098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor1.CNhs12516.13019-139D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor1_CNhs12516_13019-139D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13019-139D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor1_CNhs12516_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13019-139D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF743ZOF ENCSR000EEB Peak bigBed 5 HepG2 MAFK peaks 4 1099 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8647f9c9-7c21-4648-87ca-260b1daa97d8/ENCFF743ZOF.bigBed\ labelFields none\ longLabel HepG2 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF743ZOF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF152CCC ENCSR074WIB Peak bigBed 5 Upper lobe of left lung tissue male adult 37 years H3K4me3 peak 4 1099 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/29124467-2ec1-4f8f-b44c-0d0203180f54/ENCFF152CCC.bigBed\ color 255,0,0\ longLabel Upper lobe of left lung tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074WIB Peak\ track wgEncodeReg4Epigenetics_ENCFF152CCC\ type bigBed 5\ visibility squish\ encTfChipPkENCFF837QHJ liver HNF4A 1 narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF837QHJ) 0 1099 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF837QHJ)\ parent encTfChipPk off\ shortLabel liver HNF4A 1\ subGroups cellType=liver factor=HNF4A\ track encTfChipPkENCFF837QHJ\ AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_fwd Tc:AdipoDiff_Day04D2+ bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward 0 1099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_fwd Tc:AdipoDiff_Day04D2+ bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward 1 1099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF927ETM ENCSR000EEB Signal bigWig HepG2 MAFK ENCSR000EEB signal 2 1100 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/2e99cb0e-860b-4f54-a350-2752750b602d/ENCFF927ETM.bigWig\ color 137,152,82\ longLabel HepG2 MAFK ENCSR000EEB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEB Signal\ track wgEncodeReg4TfChip_ENCFF927ETM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF996QZC ENCSR074WIB Signal bigWig Upper lobe of left lung tissue male adult 37 years H3K4me3 signal 2 1100 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/adccac69-b613-4820-b130-fadf332dae7d/ENCFF996QZC.bigWig\ color 255,0,0\ longLabel Upper lobe of left lung tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074WIB Signal\ track wgEncodeReg4Epigenetics_ENCFF996QZC\ type bigWig\ visibility full\ encTfChipPkENCFF905JAC liver HNF4A 2 narrowPeak Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF905JAC) 0 1100 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4A in liver from ENCODE 3 (ENCFF905JAC)\ parent encTfChipPk off\ shortLabel liver HNF4A 2\ subGroups cellType=liver factor=HNF4A\ track encTfChipPkENCFF905JAC\ AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_rev Tc:AdipoDiff_Day04D2- bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse 0 1100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_rev Tc:AdipoDiff_Day04D2- bigWig Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse 1 1100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor2.CNhs13410.13022-139D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor2_CNhs13410_13022-139D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13022-139D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor2_CNhs13410_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13022-139D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF452YUT ENCSR000EEC Peak bigBed 5 HepG2 MAFF peaks 4 1101 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/bf831e5e-0b4e-4f86-a6ec-cfb5f9e70f0b/ENCFF452YUT.bigBed\ labelFields none\ longLabel HepG2 MAFF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF452YUT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF804WCL ENCSR074WMH Peak bigBed 5 Right ventricle myocardium superior tissue male adult 60 years ATAC peak 4 1101 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/33a5fcca-a7a4-4f8c-95a9-6da85bd2ea2d/ENCFF804WCL.bigBed\ color 2,199,185\ longLabel Right ventricle myocardium superior tissue male adult 60 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074WMH Peak\ track wgEncodeReg4Epigenetics_ENCFF804WCL\ type bigBed 5\ visibility squish\ encTfChipPkENCFF497MUF liver HNF4G narrowPeak Transcription Factor ChIP-seq Peaks of HNF4G in liver from ENCODE 3 (ENCFF497MUF) 0 1101 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of HNF4G in liver from ENCODE 3 (ENCFF497MUF)\ parent encTfChipPk off\ shortLabel liver HNF4G\ subGroups cellType=liver factor=HNF4G\ track encTfChipPkENCFF497MUF\ AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_fwd Tc:AdipoDiff_Day04D3+ bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward 0 1101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_fwd Tc:AdipoDiff_Day04D3+ bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward 1 1101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF978RLF ENCSR000EEC Signal bigWig HepG2 MAFF ENCSR000EEC signal 2 1102 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8d13adb6-0994-41fd-8548-db6b068891f1/ENCFF978RLF.bigWig\ color 137,152,82\ longLabel HepG2 MAFF ENCSR000EEC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEC Signal\ track wgEncodeReg4TfChip_ENCFF978RLF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF104OXF ENCSR074WMH Signal bigWig Right ventricle myocardium superior tissue male adult 60 years ATAC signal 2 1102 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/dd4b1511-6231-4f43-b507-f0755d9b37bf/ENCFF104OXF.bigWig\ color 2,199,185\ longLabel Right ventricle myocardium superior tissue male adult 60 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR074WMH Signal\ track wgEncodeReg4Epigenetics_ENCFF104OXF\ type bigWig\ visibility full\ encTfChipPkENCFF420PED liver JUND 1 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF420PED) 0 1102 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF420PED)\ parent encTfChipPk off\ shortLabel liver JUND 1\ subGroups cellType=liver factor=JUND\ track encTfChipPkENCFF420PED\ AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_rev Tc:AdipoDiff_Day04D3- bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse 0 1102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_rev Tc:AdipoDiff_Day04D3- bigWig Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse 1 1102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor3.CNhs13413.13025-139E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor3_CNhs13413_13025-139E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13025-139E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor3_CNhs13413_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13025-139E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF968LAV ENCSR000EED Peak bigBed 5 HepG2 CHD2 peaks 4 1103 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4cf71584-b5bf-456b-8042-77db05b2b919/ENCFF968LAV.bigBed\ labelFields none\ longLabel HepG2 CHD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EED Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF968LAV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF281NWM ENCSR075MQZ Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase peak 4 1103 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/4621049c-83b4-47ad-9e92-5baf0b8d776c/ENCFF281NWM.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR075MQZ Peak\ track wgEncodeReg4Epigenetics_ENCFF281NWM\ type bigBed 5\ visibility squish\ encTfChipPkENCFF229COM liver JUND 2 narrowPeak Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF229COM) 0 1103 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of JUND in liver from ENCODE 3 (ENCFF229COM)\ parent encTfChipPk off\ shortLabel liver JUND 2\ subGroups cellType=liver factor=JUND\ track encTfChipPkENCFF229COM\ AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_fwd Tc:AdipoDiff_Day04D4+ bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward 0 1103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_fwd Tc:AdipoDiff_Day04D4+ bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward 1 1103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF510DGE ENCSR000EED Signal bigWig HepG2 CHD2 ENCSR000EED signal 2 1104 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/73e07f1f-95a7-4cf6-84fa-f60dd2e2b3bf/ENCFF510DGE.bigWig\ color 137,152,82\ longLabel HepG2 CHD2 ENCSR000EED signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EED Signal\ track wgEncodeReg4TfChip_ENCFF510DGE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF369VAF ENCSR075MQZ Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase signal 2 1104 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/cf671a32-854f-423d-8536-37fcd050f2cc/ENCFF369VAF.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR075MQZ Signal\ track wgEncodeReg4Epigenetics_ENCFF369VAF\ type bigWig\ visibility full\ encTfChipPkENCFF493ZMX liver MAX 1 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF493ZMX) 0 1104 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF493ZMX)\ parent encTfChipPk off\ shortLabel liver MAX 1\ subGroups cellType=liver factor=MAX\ track encTfChipPkENCFF493ZMX\ AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_rev Tc:AdipoDiff_Day04D4- bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse 0 1104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day04D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_rev Tc:AdipoDiff_Day04D4- bigWig Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse 1 1104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day04%2c%20donor4.CNhs13417.13028-139E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day04, donor4_CNhs13417_13028-139E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13028-139E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day04D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay04Donor4_CNhs13417_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13028-139E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF536NTI ENCSR000EEE Peak bigBed 5 HepG2 CEBPB peaks 4 1105 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/eeed579f-67af-4ec6-892d-be4164893c00/ENCFF536NTI.bigBed\ labelFields none\ longLabel HepG2 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF536NTI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF698QIJ ENCSR075OQB Peak bigBed 5 Foreskin keratinocyte male newborn H3K4me3 peak 4 1105 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/f69ca0f6-8794-473f-8ca2-740c84f1ed22/ENCFF698QIJ.bigBed\ color 255,0,0\ longLabel Foreskin keratinocyte male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR075OQB Peak\ track wgEncodeReg4Epigenetics_ENCFF698QIJ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF669BQN liver MAX 2 narrowPeak Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF669BQN) 0 1105 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MAX in liver from ENCODE 3 (ENCFF669BQN)\ parent encTfChipPk off\ shortLabel liver MAX 2\ subGroups cellType=liver factor=MAX\ track encTfChipPkENCFF669BQN\ AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_fwd Tc:AdipoDiff_Day08D1+ bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward 0 1105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_fwd Tc:AdipoDiff_Day08D1+ bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward 1 1105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF425LEA ENCSR000EEE Signal bigWig HepG2 CEBPB ENCSR000EEE signal 2 1106 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/58b5f165-8b3a-46a5-a49b-dc929491a235/ENCFF425LEA.bigWig\ color 137,152,82\ longLabel HepG2 CEBPB ENCSR000EEE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEE Signal\ track wgEncodeReg4TfChip_ENCFF425LEA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF487DOQ ENCSR075OQB Signal bigWig Foreskin keratinocyte male newborn H3K4me3 signal 2 1106 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/dbd741c3-b79b-450a-905d-fbc7fabbc945/ENCFF487DOQ.bigWig\ color 255,0,0\ longLabel Foreskin keratinocyte male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR075OQB Signal\ track wgEncodeReg4Epigenetics_ENCFF487DOQ\ type bigWig\ visibility full\ encTfChipPkENCFF379TVQ liver NR2F2 1 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF379TVQ) 0 1106 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF379TVQ)\ parent encTfChipPk off\ shortLabel liver NR2F2 1\ subGroups cellType=liver factor=NR2F2\ track encTfChipPkENCFF379TVQ\ AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_rev Tc:AdipoDiff_Day08D1- bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse 0 1106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_rev Tc:AdipoDiff_Day08D1- bigWig Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse 1 1106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor1.CNhs12517.13020-139D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor1_CNhs12517_13020-139D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13020-139D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor1_CNhs12517_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13020-139D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF671JRC ENCSR000EEF Peak bigBed 5 HepG2 USF2 peaks 4 1107 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6ad1ad48-858f-41ba-bd91-e6af8adef9c5/ENCFF671JRC.bigBed\ labelFields none\ longLabel HepG2 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF671JRC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF260OFS ENCSR075PTL Peak bigBed 5 Muscle layer of duodenum tissue male adult 73 years H3K4me3 peak 4 1107 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/03a7f88b-ab44-4602-ad81-9c06f728498b/ENCFF260OFS.bigBed\ color 255,0,0\ longLabel Muscle layer of duodenum tissue male adult 73 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR075PTL Peak\ track wgEncodeReg4Epigenetics_ENCFF260OFS\ type bigBed 5\ visibility squish\ encTfChipPkENCFF819WNB liver NR2F2 2 narrowPeak Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF819WNB) 0 1107 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of NR2F2 in liver from ENCODE 3 (ENCFF819WNB)\ parent encTfChipPk off\ shortLabel liver NR2F2 2\ subGroups cellType=liver factor=NR2F2\ track encTfChipPkENCFF819WNB\ AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_fwd Tc:AdipoDiff_Day08D2+ bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward 0 1107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_fwd Tc:AdipoDiff_Day08D2+ bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward 1 1107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF081QHF ENCSR000EEF Signal bigWig HepG2 USF2 ENCSR000EEF signal 2 1108 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/4229b99a-520e-44f2-b5bf-871f48e1cf68/ENCFF081QHF.bigWig\ color 137,152,82\ longLabel HepG2 USF2 ENCSR000EEF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEF Signal\ track wgEncodeReg4TfChip_ENCFF081QHF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF639IIQ ENCSR075PTL Signal bigWig Muscle layer of duodenum tissue male adult 73 years H3K4me3 signal 2 1108 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7377ad15-c201-4d0c-9ef8-9aed1a160b07/ENCFF639IIQ.bigWig\ color 255,0,0\ longLabel Muscle layer of duodenum tissue male adult 73 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR075PTL Signal\ track wgEncodeReg4Epigenetics_ENCFF639IIQ\ type bigWig\ visibility full\ encTfChipPkENCFF229WFR liver RAD21 1 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF229WFR) 0 1108 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF229WFR)\ parent encTfChipPk off\ shortLabel liver RAD21 1\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF229WFR\ AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_rev Tc:AdipoDiff_Day08D2- bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse 0 1108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_rev Tc:AdipoDiff_Day08D2- bigWig Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse 1 1108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor2.CNhs13411.13023-139D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor2_CNhs13411_13023-139D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13023-139D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor2_CNhs13411_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13023-139D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF963UBJ ENCSR000EEG Peak bigBed 5 HepG2 RAD21 peaks 4 1109 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/96f68136-4e32-4eb3-8aa4-60c140ebdc55/ENCFF963UBJ.bigBed\ labelFields none\ longLabel HepG2 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF963UBJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF170RHP ENCSR076YBB Peak bigBed 5 Lung tissue male embryo 108 days DNase peak 4 1109 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/6a540333-a394-4566-bee2-da98d46e286e/ENCFF170RHP.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue male embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR076YBB Peak\ track wgEncodeReg4Epigenetics_ENCFF170RHP\ type bigBed 5\ visibility squish\ encTfChipPkENCFF295GOD liver RAD21 2 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF295GOD) 0 1109 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF295GOD)\ parent encTfChipPk off\ shortLabel liver RAD21 2\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF295GOD\ AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_fwd Tc:AdipoDiff_Day08D3+ bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward 0 1109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_fwd Tc:AdipoDiff_Day08D3+ bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward 1 1109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF242MRW ENCSR000EEG Signal bigWig HepG2 RAD21 ENCSR000EEG signal 2 1110 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/747c28d2-b98e-47df-9190-74fabc962b36/ENCFF242MRW.bigWig\ color 137,152,82\ longLabel HepG2 RAD21 ENCSR000EEG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEG Signal\ track wgEncodeReg4TfChip_ENCFF242MRW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF669POI ENCSR076YBB Signal bigWig Lung tissue male embryo 108 days DNase signal 2 1110 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/9de718b6-d0ac-4718-b6ec-bae9afe8e479/ENCFF669POI.bigWig\ color 6,218,147\ longLabel Lung tissue male embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR076YBB Signal\ track wgEncodeReg4Epigenetics_ENCFF669POI\ type bigWig\ visibility full\ encTfChipPkENCFF315BSV liver RAD21 3 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF315BSV) 0 1110 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in liver from ENCODE 3 (ENCFF315BSV)\ parent encTfChipPk off\ shortLabel liver RAD21 3\ subGroups cellType=liver factor=RAD21\ track encTfChipPkENCFF315BSV\ AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_rev Tc:AdipoDiff_Day08D3- bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse 0 1110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_rev Tc:AdipoDiff_Day08D3- bigWig Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse 1 1110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor3.CNhs13415.13026-139E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor3_CNhs13415_13026-139E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13026-139E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor3_CNhs13415_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13026-139E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF969ALM ENCSR000EEH Peak bigBed 5 HepG2 NRF1 peaks 4 1111 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/5b745240-d393-4ed6-83f7-23185f062782/ENCFF969ALM.bigBed\ labelFields none\ longLabel HepG2 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF969ALM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF949AWA ENCSR077ETS Peak bigBed 5 CD14-positive monocyte male adult 30 years H3K4me3 peak 4 1111 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c70d9eb9-3422-4d4b-ac8a-6024a5623d24/ENCFF949AWA.bigBed\ color 255,0,0\ longLabel CD14-positive monocyte male adult 30 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077ETS Peak\ track wgEncodeReg4Epigenetics_ENCFF949AWA\ type bigBed 5\ visibility squish\ encTfChipPkENCFF178WRO liver REST 1 narrowPeak Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF178WRO) 0 1111 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF178WRO)\ parent encTfChipPk off\ shortLabel liver REST 1\ subGroups cellType=liver factor=REST\ track encTfChipPkENCFF178WRO\ AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_fwd Tc:AdipoDiff_Day08D4+ bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward 0 1111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_fwd Tc:AdipoDiff_Day08D4+ bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward 1 1111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF278RDU ENCSR000EEH Signal bigWig HepG2 NRF1 ENCSR000EEH signal 2 1112 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/d70012b6-ac22-49e5-84ec-df4c62a3c64e/ENCFF278RDU.bigWig\ color 137,152,82\ longLabel HepG2 NRF1 ENCSR000EEH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEH Signal\ track wgEncodeReg4TfChip_ENCFF278RDU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF127TFL ENCSR077ETS Signal bigWig CD14-positive monocyte male adult 30 years H3K4me3 signal 2 1112 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/4299768e-e990-4c8d-8cf6-54ad2514181d/ENCFF127TFL.bigWig\ color 255,0,0\ longLabel CD14-positive monocyte male adult 30 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077ETS Signal\ track wgEncodeReg4Epigenetics_ENCFF127TFL\ type bigWig\ visibility full\ encTfChipPkENCFF288XHG liver REST 2 narrowPeak Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF288XHG) 0 1112 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of REST in liver from ENCODE 3 (ENCFF288XHG)\ parent encTfChipPk off\ shortLabel liver REST 2\ subGroups cellType=liver factor=REST\ track encTfChipPkENCFF288XHG\ AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_rev Tc:AdipoDiff_Day08D4- bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse 0 1112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day08D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_rev Tc:AdipoDiff_Day08D4- bigWig Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse 1 1112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day08%2c%20donor4.CNhs13418.13029-139E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day08, donor4_CNhs13418_13029-139E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13029-139E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day08D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay08Donor4_CNhs13418_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13029-139E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF869OPW ENCSR000EEI Peak bigBed 5 HepG2 JUND peaks 4 1113 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/b56f8c9a-d256-4c44-ba21-f8ca9b62814a/ENCFF869OPW.bigBed\ labelFields none\ longLabel HepG2 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF869OPW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF276RTI ENCSR077FZT Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 1113 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/fcd13a9a-3e62-4127-adba-02f3020f700d/ENCFF276RTI.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077FZT Peak\ track wgEncodeReg4Epigenetics_ENCFF276RTI\ type bigBed 5\ visibility squish\ encTfChipPkENCFF201KGJ liver RXRA 1 narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF201KGJ) 0 1113 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF201KGJ)\ parent encTfChipPk off\ shortLabel liver RXRA 1\ subGroups cellType=liver factor=RXRA\ track encTfChipPkENCFF201KGJ\ AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_fwd Tc:AdipoDiff_Day12D1+ bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward 0 1113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_fwd Tc:AdipoDiff_Day12D1+ bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward 1 1113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D1+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF103TQH ENCSR000EEI Signal bigWig HepG2 JUND ENCSR000EEI signal 2 1114 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/23922363-497e-4f9d-99ae-cefb72808ac1/ENCFF103TQH.bigWig\ color 137,152,82\ longLabel HepG2 JUND ENCSR000EEI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEI Signal\ track wgEncodeReg4TfChip_ENCFF103TQH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF175MGD ENCSR077FZT Signal bigWig CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 1114 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/33d029dd-2092-487f-8b33-787ecb242444/ENCFF175MGD.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077FZT Signal\ track wgEncodeReg4Epigenetics_ENCFF175MGD\ type bigWig\ visibility full\ encTfChipPkENCFF572MCI liver RXRA 2 narrowPeak Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF572MCI) 0 1114 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RXRA in liver from ENCODE 3 (ENCFF572MCI)\ parent encTfChipPk off\ shortLabel liver RXRA 2\ subGroups cellType=liver factor=RXRA\ track encTfChipPkENCFF572MCI\ AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_rev Tc:AdipoDiff_Day12D1- bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse 0 1114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_rev Tc:AdipoDiff_Day12D1- bigWig Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse 1 1114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor1.CNhs13336.13021-139D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor1_CNhs13336_13021-139D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13021-139D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D1-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor1_CNhs13336_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13021-139D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF401CRH ENCSR000EEK Peak bigBed 5 HepG2 JUN peaks 4 1115 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/9a769c11-a5e0-4e0a-b6e2-9384c3decc29/ENCFF401CRH.bigBed\ labelFields none\ longLabel HepG2 JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF401CRH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF184MRW ENCSR077HGR Peak bigBed 5 Esophagus muscularis mucosa tissue male adult 54 years H3K4me3 peak 4 1115 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/cb906f09-6ce7-4fbe-ae62-69405f6fa438/ENCFF184MRW.bigBed\ color 255,0,0\ longLabel Esophagus muscularis mucosa tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077HGR Peak\ track wgEncodeReg4Epigenetics_ENCFF184MRW\ type bigBed 5\ visibility squish\ encTfChipPkENCFF433EFF liver SP1 1 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF433EFF) 0 1115 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF433EFF)\ parent encTfChipPk off\ shortLabel liver SP1 1\ subGroups cellType=liver factor=SP1\ track encTfChipPkENCFF433EFF\ AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_fwd Tc:AdipoDiff_Day12D2+ bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward 0 1115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_fwd Tc:AdipoDiff_Day12D2+ bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward 1 1115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D2+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF972PLC ENCSR000EEK Signal bigWig HepG2 JUN ENCSR000EEK signal 2 1116 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/52fde65d-fe25-419a-b272-9314b81445b4/ENCFF972PLC.bigWig\ color 137,152,82\ longLabel HepG2 JUN ENCSR000EEK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEK Signal\ track wgEncodeReg4TfChip_ENCFF972PLC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF645DEG ENCSR077HGR Signal bigWig Esophagus muscularis mucosa tissue male adult 54 years H3K4me3 signal 2 1116 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/02a0e9e8-04ff-4269-a7f4-d98cb73448a2/ENCFF645DEG.bigWig\ color 255,0,0\ longLabel Esophagus muscularis mucosa tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077HGR Signal\ track wgEncodeReg4Epigenetics_ENCFF645DEG\ type bigWig\ visibility full\ encTfChipPkENCFF978TMH liver SP1 2 narrowPeak Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF978TMH) 0 1116 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SP1 in liver from ENCODE 3 (ENCFF978TMH)\ parent encTfChipPk off\ shortLabel liver SP1 2\ subGroups cellType=liver factor=SP1\ track encTfChipPkENCFF978TMH\ AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_rev Tc:AdipoDiff_Day12D2- bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse 0 1116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_rev Tc:AdipoDiff_Day12D2- bigWig Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse 1 1116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor2.CNhs13412.13024-139D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor2_CNhs13412_13024-139D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13024-139D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D2-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor2_CNhs13412_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13024-139D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF023IVD ENCSR000EEL Peak bigBed 5 HepG2 TBP peaks 4 1117 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/fd92f42a-9227-4a6a-b54e-13903fec15ee/ENCFF023IVD.bigBed\ labelFields none\ longLabel HepG2 TBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF023IVD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF399OSA ENCSR077YUA Peak bigBed 5 B cell male adult 22 years H3K27ac peak 4 1117 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/a777ff94-9f81-4550-88ed-6ae04af9469b/ENCFF399OSA.bigBed\ color 181,145,0\ longLabel B cell male adult 22 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077YUA Peak\ track wgEncodeReg4Epigenetics_ENCFF399OSA\ type bigBed 5\ visibility squish\ encTfChipPkENCFF214OJW liver TAF1 narrowPeak Transcription Factor ChIP-seq Peaks of TAF1 in liver from ENCODE 3 (ENCFF214OJW) 0 1117 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of TAF1 in liver from ENCODE 3 (ENCFF214OJW)\ parent encTfChipPk off\ shortLabel liver TAF1\ subGroups cellType=liver factor=TAF1\ track encTfChipPkENCFF214OJW\ AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_fwd Tc:AdipoDiff_Day12D3+ bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward 0 1117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_fwd Tc:AdipoDiff_Day12D3+ bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward 1 1117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D3+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF576NZL ENCSR000EEL Signal bigWig HepG2 TBP ENCSR000EEL signal 2 1118 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/a310662a-e619-4e50-80ed-0a29254e639b/ENCFF576NZL.bigWig\ color 137,152,82\ longLabel HepG2 TBP ENCSR000EEL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEL Signal\ track wgEncodeReg4TfChip_ENCFF576NZL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF573FQS ENCSR077YUA Signal bigWig B cell male adult 22 years H3K27ac signal 2 1118 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/7bd49143-de83-43bb-bd04-af7c3ac8c9cf/ENCFF573FQS.bigWig\ color 181,145,0\ longLabel B cell male adult 22 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR077YUA Signal\ track wgEncodeReg4Epigenetics_ENCFF573FQS\ type bigWig\ visibility full\ encTfChipPkENCFF838VFX liver YY1 1 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF838VFX) 0 1118 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF838VFX)\ parent encTfChipPk off\ shortLabel liver YY1 1\ subGroups cellType=liver factor=YY1\ track encTfChipPkENCFF838VFX\ AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_rev Tc:AdipoDiff_Day12D3- bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse 0 1118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_rev Tc:AdipoDiff_Day12D3- bigWig Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse 1 1118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor3.CNhs13416.13027-139E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor3_CNhs13416_13027-139E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13027-139E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D3-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor3_CNhs13416_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13027-139E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF350RIU ENCSR000EEM Peak bigBed 5 HepG2 POLR2A peaks 4 1119 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f5eec051-4862-4289-bdb7-6b2d0b399dea/ENCFF350RIU.bigBed\ labelFields none\ longLabel HepG2 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF350RIU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF828CER ENCSR078ATS Peak bigBed 5 Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak 4 1119 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9afee4c4-d67b-41cc-9a2e-1dd7952b6491/ENCFF828CER.bigBed\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR078ATS Peak\ track wgEncodeReg4Epigenetics_ENCFF828CER\ type bigBed 5\ visibility squish\ encTfChipPkENCFF459TWF liver YY1 2 narrowPeak Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF459TWF) 0 1119 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of YY1 in liver from ENCODE 3 (ENCFF459TWF)\ parent encTfChipPk off\ shortLabel liver YY1 2\ subGroups cellType=liver factor=YY1\ track encTfChipPkENCFF459TWF\ AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_fwd Tc:AdipoDiff_Day12D4+ bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward 0 1119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_fwd Tc:AdipoDiff_Day12D4+ bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward 1 1119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D4+\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=forward\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF761IJZ ENCSR000EEM Signal bigWig HepG2 POLR2A ENCSR000EEM signal 2 1120 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/6c22592a-e72e-4746-b86e-ddcd3019b4c9/ENCFF761IJZ.bigWig\ color 137,152,82\ longLabel HepG2 POLR2A ENCSR000EEM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEM Signal\ track wgEncodeReg4TfChip_ENCFF761IJZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF006ULZ ENCSR078ATS Signal bigWig Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal 2 1120 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/f33522d7-52c4-4a3a-bbae-e0e964693106/ENCFF006ULZ.bigWig\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR078ATS Signal\ track wgEncodeReg4Epigenetics_ENCFF006ULZ\ type bigWig\ visibility full\ encTfChipPkENCFF882UHR liver ZBTB33 1 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF882UHR) 0 1120 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF882UHR)\ parent encTfChipPk off\ shortLabel liver ZBTB33 1\ subGroups cellType=liver factor=ZBTB33\ track encTfChipPkENCFF882UHR\ AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_rev Tc:AdipoDiff_Day12D4- bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse 0 1120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:AdipoDiff_Day12D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_rev Tc:AdipoDiff_Day12D4- bigWig Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse 1 1120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20differentiation%2c%20day12%2c%20donor4.CNhs13419.13030-139E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte differentiation, day12, donor4_CNhs13419_13030-139E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13030-139E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:AdipoDiff_Day12D4-\ subGroups sequenceTech=hCAGE category=Preadipocyte_to_adipocyte strand=reverse\ track AdipocyteDifferentiationDay12Donor4_CNhs13419_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13030-139E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF100YIN ENCSR000EEZ Peak bigBed 5 Endothelial cell of umbilical vein newborn MAX peaks 4 1121 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/9516d5ac-3c8a-4703-b57c-65962957a5c9/ENCFF100YIN.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF100YIN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF032IHF ENCSR078EBD Peak bigBed 5 Spleen tissue female adult 51 years ATAC peak 4 1121 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/80f7e5f7-cc7f-4e6d-8b85-1d855659dda9/ENCFF032IHF.bigBed\ color 2,199,185\ longLabel Spleen tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR078EBD Peak\ track wgEncodeReg4Epigenetics_ENCFF032IHF\ type bigBed 5\ visibility squish\ encTfChipPkENCFF727ZIT liver ZBTB33 2 narrowPeak Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF727ZIT) 0 1121 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of ZBTB33 in liver from ENCODE 3 (ENCFF727ZIT)\ parent encTfChipPk off\ shortLabel liver ZBTB33 2\ subGroups cellType=liver factor=ZBTB33\ track encTfChipPkENCFF727ZIT\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_fwd Tc:293SlamRinderpest_00hrBr1+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward 0 1121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_fwd Tc:293SlamRinderpest_00hrBr1+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward 1 1121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF577WCB ENCSR000EEZ Signal bigWig Endothelial cell of umbilical vein newborn MAX ENCSR000EEZ signal 2 1122 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/3d0ce2ec-3e5e-4ce4-b1e9-b4cdfeeb129a/ENCFF577WCB.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn MAX ENCSR000EEZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EEZ Signal\ track wgEncodeReg4TfChip_ENCFF577WCB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF869NXS ENCSR078EBD Signal bigWig Spleen tissue female adult 51 years ATAC signal 2 1122 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/3879fe39-56ec-4e35-b6fb-96ead18fd291/ENCFF869NXS.bigWig\ color 2,199,185\ longLabel Spleen tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR078EBD Signal\ track wgEncodeReg4Epigenetics_ENCFF869NXS\ type bigWig\ visibility full\ encTfChipPkENCFF912XIE lwrLegSkin CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF912XIE) 0 1122 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF912XIE)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 1\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF912XIE\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_rev Tc:293SlamRinderpest_00hrBr1- bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse 0 1122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_rev Tc:293SlamRinderpest_00hrBr1- bigWig 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse 1 1122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14406.13541-145H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep1_CNhs14406_13541-145H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13541-145H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep1_CNhs14406_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13541-145H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF791BMV ENCSR000EFA Peak bigBed 5 Endothelial cell of umbilical vein newborn JUN peaks 4 1123 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/d852ff60-f967-4338-bbaf-91252bd43157/ENCFF791BMV.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF791BMV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF403FUG ENCSR078LIZ Peak bigBed 5 Colonic mucosa tissue female adult 41 years H3K27ac peak 4 1123 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/bf5f5493-a15b-414d-a389-e08235915e82/ENCFF403FUG.bigBed\ color 181,145,0\ longLabel Colonic mucosa tissue female adult 41 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR078LIZ Peak\ track wgEncodeReg4Epigenetics_ENCFF403FUG\ type bigBed 5\ visibility squish\ encTfChipPkENCFF846VQK lwrLegSkin CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF846VQK) 0 1123 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF846VQK)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 2\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF846VQK\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_fwd Tc:293SlamRinderpest_00hrBr2+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward 0 1123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_fwd Tc:293SlamRinderpest_00hrBr2+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward 1 1123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF672FUO ENCSR000EFA Signal bigWig Endothelial cell of umbilical vein newborn JUN ENCSR000EFA signal 2 1124 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5bd4c09c-b138-4999-8230-a318c9f0abfa/ENCFF672FUO.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn JUN ENCSR000EFA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFA Signal\ track wgEncodeReg4TfChip_ENCFF672FUO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF004SRJ ENCSR078LIZ Signal bigWig Colonic mucosa tissue female adult 41 years H3K27ac signal 2 1124 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/aa2937bb-65e9-44a4-b77c-33ae4df9e353/ENCFF004SRJ.bigWig\ color 181,145,0\ longLabel Colonic mucosa tissue female adult 41 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR078LIZ Signal\ track wgEncodeReg4Epigenetics_ENCFF004SRJ\ type bigWig\ visibility full\ encTfChipPkENCFF992DNN lwrLegSkin CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF992DNN) 0 1124 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF992DNN)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 3\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF992DNN\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_rev Tc:293SlamRinderpest_00hrBr2- bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse 0 1124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_rev Tc:293SlamRinderpest_00hrBr2- bigWig 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse 1 1124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14407.13542-145H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep2_CNhs14407_13542-145H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13542-145H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep2_CNhs14407_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13542-145H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF091YHT ENCSR000EFB Peak bigBed 5 Endothelial cell of umbilical vein newborn POLR2A peaks 4 1125 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/65ba8538-2ebd-46db-82a6-14f35e7013fe/ENCFF091YHT.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF091YHT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF615JYX ENCSR079EXG Peak bigBed 5 T-helper 17 cell male adult 50 years H3K4me3 peak 4 1125 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/53270917-8d05-443e-bd61-35bda491995f/ENCFF615JYX.bigBed\ color 255,0,0\ longLabel T-helper 17 cell male adult 50 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR079EXG Peak\ track wgEncodeReg4Epigenetics_ENCFF615JYX\ type bigBed 5\ visibility squish\ encTfChipPkENCFF916FGF lwrLegSkin CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF916FGF) 0 1125 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in lower_leg_skin from ENCODE 3 (ENCFF916FGF)\ parent encTfChipPk off\ shortLabel lwrLegSkin CTCF 4\ subGroups cellType=lower_leg_skin factor=CTCF\ track encTfChipPkENCFF916FGF\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_fwd Tc:293SlamRinderpest_00hrBr3+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward 0 1125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_fwd Tc:293SlamRinderpest_00hrBr3+ bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward 1 1125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF088YCV ENCSR000EFB Signal bigWig Endothelial cell of umbilical vein newborn POLR2A ENCSR000EFB signal 2 1126 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/0ad2cfdf-8e1e-4c89-8328-595646ba4a51/ENCFF088YCV.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn POLR2A ENCSR000EFB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFB Signal\ track wgEncodeReg4TfChip_ENCFF088YCV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF411UVN ENCSR079EXG Signal bigWig T-helper 17 cell male adult 50 years H3K4me3 signal 2 1126 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/9da2c09c-ee7e-4df6-a2fb-c457bbf7ef97/ENCFF411UVN.bigWig\ color 255,0,0\ longLabel T-helper 17 cell male adult 50 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR079EXG Signal\ track wgEncodeReg4Epigenetics_ENCFF411UVN\ type bigWig\ visibility full\ encTfChipPkENCFF818GNJ lwrLgSkn POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF818GNJ) 0 1126 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF818GNJ)\ parent encTfChipPk off\ shortLabel lwrLgSkn POLR2A 1\ subGroups cellType=lower_leg_skin factor=POLR2A\ track encTfChipPkENCFF818GNJ\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_rev Tc:293SlamRinderpest_00hrBr3- bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse 0 1126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_rev Tc:293SlamRinderpest_00hrBr3- bigWig 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse 1 1126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14408.13543-145H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 00hr, biol_rep3_CNhs14408_13543-145H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13543-145H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection00hrBiolRep3_CNhs14408_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13543-145H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF921SVK ENCSR000EFC Peak bigBed 5 IMR-90 CHD1 peaks 4 1127 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/21636f0b-7af8-4e86-8a45-63a7f873043e/ENCFF921SVK.bigBed\ labelFields none\ longLabel IMR-90 CHD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF921SVK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF279CMY ENCSR079YAP Peak bigBed 5 Tibial artery tissue male adult 37 years CTCF peak 4 1127 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1624fc5c-6c22-42bc-85c3-938279e8d6b7/ENCFF279CMY.bigBed\ color 0,176,240\ labelFields none\ longLabel Tibial artery tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR079YAP Peak\ track wgEncodeReg4Epigenetics_ENCFF279CMY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF072MPX lwrLgSkn POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF072MPX) 0 1127 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in lower_leg_skin from ENCODE 3 (ENCFF072MPX)\ parent encTfChipPk off\ shortLabel lwrLgSkn POLR2A 2\ subGroups cellType=lower_leg_skin factor=POLR2A\ track encTfChipPkENCFF072MPX\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_fwd Tc:293SlamRinderpest_06hrBr1+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward 0 1127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_fwd Tc:293SlamRinderpest_06hrBr1+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward 1 1127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF121KVV ENCSR000EFC Signal bigWig IMR-90 CHD1 ENCSR000EFC signal 2 1128 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/b5238f2d-cb75-4dc3-b1da-408b596c02a2/ENCFF121KVV.bigWig\ color 130,163,45\ longLabel IMR-90 CHD1 ENCSR000EFC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFC Signal\ track wgEncodeReg4TfChip_ENCFF121KVV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF500RDL ENCSR079YAP Signal bigWig Tibial artery tissue male adult 37 years CTCF signal 2 1128 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/b8d0ea74-4b55-4625-9925-40e7047241ce/ENCFF500RDL.bigWig\ color 0,176,240\ longLabel Tibial artery tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR079YAP Signal\ track wgEncodeReg4Epigenetics_ENCFF500RDL\ type bigWig\ visibility full\ encTfChipPkENCFF493HJH mammaryEpith CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in mammary_epithelial_cell from ENCODE 3 (ENCFF493HJH) 0 1128 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in mammary_epithelial_cell from ENCODE 3 (ENCFF493HJH)\ parent encTfChipPk off\ shortLabel mammaryEpith CTCF\ subGroups cellType=mammary_epithelial_cell factor=CTCF\ track encTfChipPkENCFF493HJH\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_rev Tc:293SlamRinderpest_06hrBr1- bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse 0 1128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_rev Tc:293SlamRinderpest_06hrBr1- bigWig 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse 1 1128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14410.13544-145H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep1_CNhs14410_13544-145H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13544-145H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep1_CNhs14410_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13544-145H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF886KPO ENCSR000EFD Peak bigBed 5 IMR-90 RFX5 peaks 4 1129 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/08/df4487b0-d8dd-4eff-a069-5008da6c09b0/ENCFF886KPO.bigBed\ labelFields none\ longLabel IMR-90 RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF886KPO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF545RHA ENCSR079ZQI Peak bigBed 5 Foreskin fibroblast male newborn H3K4me3 peak 4 1129 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5bdc12ac-d89a-4f05-8a94-12b3fb8c3f01/ENCFF545RHA.bigBed\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR079ZQI Peak\ track wgEncodeReg4Epigenetics_ENCFF545RHA\ type bigBed 5\ visibility squish\ encTfChipPkENCFF845NAG medlblastoma CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in medulloblastoma from ENCODE 3 (ENCFF845NAG) 0 1129 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in medulloblastoma from ENCODE 3 (ENCFF845NAG)\ parent encTfChipPk off\ shortLabel medlblastoma CTCF\ subGroups cellType=medulloblastoma factor=CTCF\ track encTfChipPkENCFF845NAG\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_fwd Tc:293SlamRinderpest_06hrBr2+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward 0 1129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_fwd Tc:293SlamRinderpest_06hrBr2+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward 1 1129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF606CXT ENCSR000EFD Signal bigWig IMR-90 RFX5 ENCSR000EFD signal 2 1130 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/08/40b0005a-7c0a-47f5-a992-ee5c6ad466ac/ENCFF606CXT.bigWig\ color 130,163,45\ longLabel IMR-90 RFX5 ENCSR000EFD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFD Signal\ track wgEncodeReg4TfChip_ENCFF606CXT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF388QVC ENCSR079ZQI Signal bigWig Foreskin fibroblast male newborn H3K4me3 signal 2 1130 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/ff5e53b4-d0dd-4acc-9008-4379d3f664be/ENCFF388QVC.bigWig\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR079ZQI Signal\ track wgEncodeReg4Epigenetics_ENCFF388QVC\ type bigWig\ visibility full\ encTfChipPkENCFF719TNH myotube CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in myotube from ENCODE 3 (ENCFF719TNH) 0 1130 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in myotube from ENCODE 3 (ENCFF719TNH)\ parent encTfChipPk off\ shortLabel myotube CTCF\ subGroups cellType=myotube factor=CTCF\ track encTfChipPkENCFF719TNH\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_rev Tc:293SlamRinderpest_06hrBr2- bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse 0 1130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_rev Tc:293SlamRinderpest_06hrBr2- bigWig 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse 1 1130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14411.13545-145H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep2_CNhs14411_13545-145H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13545-145H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep2_CNhs14411_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13545-145H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF040YVH ENCSR000EFE Peak bigBed 5 IMR-90 MXI1 peaks 4 1131 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/6b99bd2a-df1a-491a-9190-eb857415b2d2/ENCFF040YVH.bigBed\ labelFields none\ longLabel IMR-90 MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF040YVH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF792RUV ENCSR080ISA Peak bigBed 5 Tibial artery tissue female adult 53 years DNase peak 4 1131 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/c4732ace-347b-403c-8a0d-52f0c48d1f3a/ENCFF792RUV.bigBed\ color 6,218,147\ labelFields none\ longLabel Tibial artery tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR080ISA Peak\ track wgEncodeReg4Epigenetics_ENCFF792RUV\ type bigBed 5\ visibility squish\ encTfChipPkENCFF372JOV neuralCell CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neural_cell from ENCODE 3 (ENCFF372JOV) 0 1131 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neural_cell from ENCODE 3 (ENCFF372JOV)\ parent encTfChipPk off\ shortLabel neuralCell CTCF\ subGroups cellType=neural_cell factor=CTCF\ track encTfChipPkENCFF372JOV\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_fwd Tc:293SlamRinderpest_06hrBr3+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward 0 1131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_fwd Tc:293SlamRinderpest_06hrBr3+ bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward 1 1131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF203VSK ENCSR000EFE Signal bigWig IMR-90 MXI1 ENCSR000EFE signal 2 1132 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/bc15176b-7140-4b63-92a9-6b38dd4737ba/ENCFF203VSK.bigWig\ color 130,163,45\ longLabel IMR-90 MXI1 ENCSR000EFE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFE Signal\ track wgEncodeReg4TfChip_ENCFF203VSK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF787EAS ENCSR080ISA Signal bigWig Tibial artery tissue female adult 53 years DNase signal 2 1132 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/06f59669-3263-4781-87f2-566c144193c1/ENCFF787EAS.bigWig\ color 6,218,147\ longLabel Tibial artery tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR080ISA Signal\ track wgEncodeReg4Epigenetics_ENCFF787EAS\ type bigWig\ visibility full\ encTfChipPkENCFF459ARL neuralCell EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in neural_cell from ENCODE 3 (ENCFF459ARL) 0 1132 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in neural_cell from ENCODE 3 (ENCFF459ARL)\ parent encTfChipPk off\ shortLabel neuralCell EP300\ subGroups cellType=neural_cell factor=EP300\ track encTfChipPkENCFF459ARL\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_rev Tc:293SlamRinderpest_06hrBr3- bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse 0 1132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_rev Tc:293SlamRinderpest_06hrBr3- bigWig 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse 1 1132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14412.13546-145H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 06hr, biol_rep3_CNhs14412_13546-145H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13546-145H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection06hrBiolRep3_CNhs14412_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13546-145H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF682IKN ENCSR000EFF Peak bigBed 5 IMR-90 MAZ peaks 4 1133 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/d80890a5-f4ee-4ba3-99a2-fe9b3e942ca2/ENCFF682IKN.bigBed\ labelFields none\ longLabel IMR-90 MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF682IKN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF787JOF ENCSR080PZL Peak bigBed 5 Adrenal gland tissue male embryo 101 days DNase peak 4 1133 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/47caa74c-c9f2-4a85-bd1b-889ed3e1b5bd/ENCFF787JOF.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue male embryo 101 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR080PZL Peak\ track wgEncodeReg4Epigenetics_ENCFF787JOF\ type bigBed 5\ visibility squish\ encTfChipPkENCFF108BSU neuralCell EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in neural_cell from ENCODE 3 (ENCFF108BSU) 0 1133 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in neural_cell from ENCODE 3 (ENCFF108BSU)\ parent encTfChipPk off\ shortLabel neuralCell EZH2\ subGroups cellType=neural_cell factor=EZH2\ track encTfChipPkENCFF108BSU\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_fwd Tc:293SlamRinderpest_12hrBr1+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward 0 1133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_fwd Tc:293SlamRinderpest_12hrBr1+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward 1 1133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF178YPK ENCSR000EFF Signal bigWig IMR-90 MAZ ENCSR000EFF signal 2 1134 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/78405bed-e949-4376-85b1-d6610093420d/ENCFF178YPK.bigWig\ color 130,163,45\ longLabel IMR-90 MAZ ENCSR000EFF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFF Signal\ track wgEncodeReg4TfChip_ENCFF178YPK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF967PSY ENCSR080PZL Signal bigWig Adrenal gland tissue male embryo 101 days DNase signal 2 1134 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/609fece3-21ec-41ed-accc-ad61c8ffb4d3/ENCFF967PSY.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue male embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR080PZL Signal\ track wgEncodeReg4Epigenetics_ENCFF967PSY\ type bigWig\ visibility full\ encTfChipPkENCFF255WJM neuralCell MXI1 narrowPeak Transcription Factor ChIP-seq Peaks of MXI1 in neural_cell from ENCODE 3 (ENCFF255WJM) 0 1134 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of MXI1 in neural_cell from ENCODE 3 (ENCFF255WJM)\ parent encTfChipPk off\ shortLabel neuralCell MXI1\ subGroups cellType=neural_cell factor=MXI1\ track encTfChipPkENCFF255WJM\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_rev Tc:293SlamRinderpest_12hrBr1- bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse 0 1134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_rev Tc:293SlamRinderpest_12hrBr1- bigWig 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse 1 1134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14413.13547-145I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep1_CNhs14413_13547-145I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13547-145I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep1_CNhs14413_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13547-145I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF644MZN ENCSR000EFG Peak bigBed 5 IMR-90 RCOR1 peaks 4 1135 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/fef81162-321b-45fe-81f7-dcad8b416f4d/ENCFF644MZN.bigBed\ labelFields none\ longLabel IMR-90 RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF644MZN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF727KXQ ENCSR080SNF Peak bigBed 5 RWPE2 ATAC peak 4 1135 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/b36bbd17-67a4-4ac4-8639-2cd3893013c7/ENCFF727KXQ.bigBed\ color 2,199,185\ longLabel RWPE2 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR080SNF Peak\ track wgEncodeReg4Epigenetics_ENCFF727KXQ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF454TRL neuralCell RAD21 narrowPeak Transcription Factor ChIP-seq Peaks of RAD21 in neural_cell from ENCODE 3 (ENCFF454TRL) 0 1135 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of RAD21 in neural_cell from ENCODE 3 (ENCFF454TRL)\ parent encTfChipPk off\ shortLabel neuralCell RAD21\ subGroups cellType=neural_cell factor=RAD21\ track encTfChipPkENCFF454TRL\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_fwd Tc:293SlamRinderpest_12hrBr2+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward 0 1135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_fwd Tc:293SlamRinderpest_12hrBr2+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward 1 1135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF697ZWE ENCSR000EFG Signal bigWig IMR-90 RCOR1 ENCSR000EFG signal 2 1136 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/ff9a296a-78e1-48e7-bba8-d20aebbc1aec/ENCFF697ZWE.bigWig\ color 130,163,45\ longLabel IMR-90 RCOR1 ENCSR000EFG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFG Signal\ track wgEncodeReg4TfChip_ENCFF697ZWE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF047EBV ENCSR080SNF Signal bigWig RWPE2 ATAC signal 2 1136 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/225b6766-1de6-4dd8-a663-4d4a33a0f528/ENCFF047EBV.bigWig\ color 2,199,185\ longLabel RWPE2 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR080SNF Signal\ track wgEncodeReg4Epigenetics_ENCFF047EBV\ type bigWig\ visibility full\ encTfChipPkENCFF944KJO neuralCell SMC3 narrowPeak Transcription Factor ChIP-seq Peaks of SMC3 in neural_cell from ENCODE 3 (ENCFF944KJO) 0 1136 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of SMC3 in neural_cell from ENCODE 3 (ENCFF944KJO)\ parent encTfChipPk off\ shortLabel neuralCell SMC3\ subGroups cellType=neural_cell factor=SMC3\ track encTfChipPkENCFF944KJO\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_rev Tc:293SlamRinderpest_12hrBr2- bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse 0 1136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_rev Tc:293SlamRinderpest_12hrBr2- bigWig 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse 1 1136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14414.13548-145I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep2_CNhs14414_13548-145I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13548-145I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep2_CNhs14414_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13548-145I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF336DHZ ENCSR000EFH Peak bigBed 5 IMR-90 MAFK peaks 4 1137 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/88bde12d-f42c-4b90-9cac-4337926da9b5/ENCFF336DHZ.bigBed\ labelFields none\ longLabel IMR-90 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF336DHZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF018KNF ENCSR081OTO Peak bigBed 5 Breast epithelium tissue female adult 51 years H3K27ac peak 4 1137 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/0c3b2e14-b849-44c9-aab0-422c74cf4657/ENCFF018KNF.bigBed\ color 181,145,0\ longLabel Breast epithelium tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR081OTO Peak\ track wgEncodeReg4Epigenetics_ENCFF018KNF\ type bigBed 5\ visibility squish\ encTfChipPkENCFF560GGY neurlProgntr CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neural_progenitor_cell from ENCODE 3 (ENCFF560GGY) 0 1137 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neural_progenitor_cell from ENCODE 3 (ENCFF560GGY)\ parent encTfChipPk off\ shortLabel neurlProgntr CTCF\ subGroups cellType=neural_progenitor_cell factor=CTCF\ track encTfChipPkENCFF560GGY\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_fwd Tc:293SlamRinderpest_12hrBr3+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward 0 1137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_fwd Tc:293SlamRinderpest_12hrBr3+ bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward 1 1137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF998FWF ENCSR000EFH Signal bigWig IMR-90 MAFK ENCSR000EFH signal 2 1138 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/4b9ad0ba-8ae5-4183-94bc-d35b268ecf72/ENCFF998FWF.bigWig\ color 130,163,45\ longLabel IMR-90 MAFK ENCSR000EFH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFH Signal\ track wgEncodeReg4TfChip_ENCFF998FWF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF085IYD ENCSR081OTO Signal bigWig Breast epithelium tissue female adult 51 years H3K27ac signal 2 1138 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/1f739d6b-9213-4940-acda-f621eb1012db/ENCFF085IYD.bigWig\ color 181,145,0\ longLabel Breast epithelium tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR081OTO Signal\ track wgEncodeReg4Epigenetics_ENCFF085IYD\ type bigWig\ visibility full\ encTfChipPkENCFF295HQJ neurlProgntr EZH2 narrowPeak Transcription Factor ChIP-seq Peaks of EZH2 in neural_progenitor_cell from ENCODE 3 (ENCFF295HQJ) 0 1138 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EZH2 in neural_progenitor_cell from ENCODE 3 (ENCFF295HQJ)\ parent encTfChipPk off\ shortLabel neurlProgntr EZH2\ subGroups cellType=neural_progenitor_cell factor=EZH2\ track encTfChipPkENCFF295HQJ\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_rev Tc:293SlamRinderpest_12hrBr3- bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse 0 1138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_rev Tc:293SlamRinderpest_12hrBr3- bigWig 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse 1 1138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14415.13549-145I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 12hr, biol_rep3_CNhs14415_13549-145I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13549-145I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection12hrBiolRep3_CNhs14415_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13549-145I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF887MRH ENCSR000EFI Peak bigBed 5 IMR-90 CTCF peaks 4 1139 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/87e049c9-f49e-4e81-8579-96f5c9dff64e/ENCFF887MRH.bigBed\ labelFields none\ longLabel IMR-90 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF887MRH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF044RVY ENCSR082DLA Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years H3K27ac peak 4 1139 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/a96da88c-2f84-4409-b1ca-dd1c2e23b56d/ENCFF044RVY.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082DLA Peak\ track wgEncodeReg4Epigenetics_ENCFF044RVY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF122IMV neutrophil CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in neutrophil from ENCODE 3 (ENCFF122IMV) 0 1139 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in neutrophil from ENCODE 3 (ENCFF122IMV)\ parent encTfChipPk off\ shortLabel neutrophil CTCF\ subGroups cellType=neutrophil factor=CTCF\ track encTfChipPkENCFF122IMV\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_fwd Tc:293SlamRinderpest_24hrBr1+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward 0 1139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_fwd Tc:293SlamRinderpest_24hrBr1+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward 1 1139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF105FHL ENCSR000EFI Signal bigWig IMR-90 CTCF ENCSR000EFI signal 2 1140 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/dbb4db34-7720-46ec-a9ca-6b1c2d68ddc5/ENCFF105FHL.bigWig\ color 130,163,45\ longLabel IMR-90 CTCF ENCSR000EFI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFI Signal\ track wgEncodeReg4TfChip_ENCFF105FHL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF757ACV ENCSR082DLA Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years H3K27ac signal 2 1140 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/4bd5e1c2-9b56-4750-9823-72c988a27485/ENCFF757ACV.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082DLA Signal\ track wgEncodeReg4Epigenetics_ENCFF757ACV\ type bigWig\ visibility full\ encTfChipPkENCFF668UDC omentalFat CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF668UDC) 0 1140 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF668UDC)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 1\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF668UDC\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_rev Tc:293SlamRinderpest_24hrBr1- bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse 0 1140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_rev Tc:293SlamRinderpest_24hrBr1- bigWig 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse 1 1140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14416.13550-145I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep1_CNhs14416_13550-145I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13550-145I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep1_CNhs14416_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13550-145I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF752PTH ENCSR000EFJ Peak bigBed 5 IMR-90 RAD21 peaks 4 1141 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/07df9ac1-958f-4562-b30f-3df936e9f2ef/ENCFF752PTH.bigBed\ labelFields none\ longLabel IMR-90 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF752PTH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF168VGN ENCSR082JCE Peak bigBed 5 Kidney tissue female embryo 121 days DNase peak 4 1141 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/9bca15b6-2b6f-48ed-9420-e9ccff69edc8/ENCFF168VGN.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue female embryo 121 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082JCE Peak\ track wgEncodeReg4Epigenetics_ENCFF168VGN\ type bigBed 5\ visibility squish\ encTfChipPkENCFF399NTP omentalFat CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF399NTP) 0 1141 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF399NTP)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 2\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF399NTP\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_fwd Tc:293SlamRinderpest_24hrBr2+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward 0 1141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_fwd Tc:293SlamRinderpest_24hrBr2+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward 1 1141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF048PZI ENCSR000EFJ Signal bigWig IMR-90 RAD21 ENCSR000EFJ signal 2 1142 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/85637d92-0dc9-4b24-8351-65e7782b8de2/ENCFF048PZI.bigWig\ color 130,163,45\ longLabel IMR-90 RAD21 ENCSR000EFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFJ Signal\ track wgEncodeReg4TfChip_ENCFF048PZI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF996ZCU ENCSR082JCE Signal bigWig Kidney tissue female embryo 121 days DNase signal 2 1142 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/811f15d0-d089-4888-bf58-ced1fe279560/ENCFF996ZCU.bigWig\ color 6,218,147\ longLabel Kidney tissue female embryo 121 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082JCE Signal\ track wgEncodeReg4Epigenetics_ENCFF996ZCU\ type bigWig\ visibility full\ encTfChipPkENCFF157OEN omentalFat CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF157OEN) 0 1142 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in omental_fat_pad from ENCODE 3 (ENCFF157OEN)\ parent encTfChipPk off\ shortLabel omentalFat CTCF 3\ subGroups cellType=omental_fat_pad factor=CTCF\ track encTfChipPkENCFF157OEN\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_rev Tc:293SlamRinderpest_24hrBr2- bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse 0 1142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_rev Tc:293SlamRinderpest_24hrBr2- bigWig 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse 1 1142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14417.13551-145I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep2_CNhs14417_13551-145I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13551-145I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep2_CNhs14417_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13551-145I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF672YWV ENCSR000EFK Peak bigBed 5 IMR-90 POLR2A peaks 4 1143 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/9bbd049e-30f2-451e-b138-76010f45a55d/ENCFF672YWV.bigBed\ labelFields none\ longLabel IMR-90 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF672YWV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF018QUH ENCSR082NQB Peak bigBed 5 NCI-H929 H3K4me3 peak 4 1143 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d2f3db81-2c98-413d-9801-e2aca5fcd347/ENCFF018QUH.bigBed\ color 255,0,0\ longLabel NCI-H929 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082NQB Peak\ track wgEncodeReg4Epigenetics_ENCFF018QUH\ type bigBed 5\ visibility squish\ encTfChipPkENCFF199FCD omntalFat EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF199FCD) 0 1143 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF199FCD)\ parent encTfChipPk off\ shortLabel omntalFat EP300 1\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF199FCD\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_fwd Tc:293SlamRinderpest_24hrBr3+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward 0 1143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_fwd Tc:293SlamRinderpest_24hrBr3+ bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward 1 1143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF851ZRC ENCSR000EFK Signal bigWig IMR-90 POLR2A ENCSR000EFK signal 2 1144 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ad87c413-a17d-49f3-a6d7-a797843cca14/ENCFF851ZRC.bigWig\ color 130,163,45\ longLabel IMR-90 POLR2A ENCSR000EFK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFK Signal\ track wgEncodeReg4TfChip_ENCFF851ZRC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF684UUJ ENCSR082NQB Signal bigWig NCI-H929 H3K4me3 signal 2 1144 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/31542ce5-598a-42cc-9296-359de7a92df9/ENCFF684UUJ.bigWig\ color 255,0,0\ longLabel NCI-H929 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082NQB Signal\ track wgEncodeReg4Epigenetics_ENCFF684UUJ\ type bigWig\ visibility full\ encTfChipPkENCFF895RTD omntalFat EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF895RTD) 0 1144 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF895RTD)\ parent encTfChipPk off\ shortLabel omntalFat EP300 2\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF895RTD\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_rev Tc:293SlamRinderpest_24hrBr3- bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse 0 1144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:293SlamRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_rev Tc:293SlamRinderpest_24hrBr3- bigWig 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse 1 1144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/293SLAM%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14418.13552-145I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel 293SLAM rinderpest infection, 24hr, biol_rep3_CNhs14418_13552-145I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13552-145I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:293SlamRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track 293SLAMRinderpestInfection24hrBiolRep3_CNhs14418_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13552-145I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF468UGY ENCSR000EFM Peak bigBed 5 IMR-90 CEBPB peaks 4 1145 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/2ecf84c8-c730-4bc4-9deb-31d4d78a5b9c/ENCFF468UGY.bigBed\ labelFields none\ longLabel IMR-90 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF468UGY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF055EER ENCSR082PDJ Peak bigBed 5 Psoas muscle tissue female child 16 years DNase peak 4 1145 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/89199dbe-11ac-4efc-aa19-3eb0dd8a6005/ENCFF055EER.bigBed\ color 6,218,147\ labelFields none\ longLabel Psoas muscle tissue female child 16 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082PDJ Peak\ track wgEncodeReg4Epigenetics_ENCFF055EER\ type bigBed 5\ visibility squish\ encTfChipPkENCFF102IIP omntalFat EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF102IIP) 0 1145 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF102IIP)\ parent encTfChipPk off\ shortLabel omntalFat EP300 3\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF102IIP\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr1+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward 0 1145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr1+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward 1 1145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF304HZD ENCSR000EFM Signal bigWig IMR-90 CEBPB ENCSR000EFM signal 2 1146 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/e3bc4181-d71c-40b8-a30d-2ec4acd2fd42/ENCFF304HZD.bigWig\ color 130,163,45\ longLabel IMR-90 CEBPB ENCSR000EFM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFM Signal\ track wgEncodeReg4TfChip_ENCFF304HZD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF468XFE ENCSR082PDJ Signal bigWig Psoas muscle tissue female child 16 years DNase signal 2 1146 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/6b540a6a-7d3f-489c-8eae-ca0d4c2a3e81/ENCFF468XFE.bigWig\ color 6,218,147\ longLabel Psoas muscle tissue female child 16 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082PDJ Signal\ track wgEncodeReg4Epigenetics_ENCFF468XFE\ type bigWig\ visibility full\ encTfChipPkENCFF454DZP omntalFat EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF454DZP) 0 1146 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in omental_fat_pad from ENCODE 3 (ENCFF454DZP)\ parent encTfChipPk off\ shortLabel omntalFat EP300 4\ subGroups cellType=omental_fat_pad factor=EP300\ track encTfChipPkENCFF454DZP\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr1- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse 0 1146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr1- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse 1 1146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep1.CNhs14435.13568-146B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep1_CNhs14435_13568-146B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13568-146B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep1_CNhs14435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13568-146B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF959WVM ENCSR000EFN Peak bigBed 5 K562 HCFC1 peaks 4 1147 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/75a7dfc6-ea5b-444e-8743-054e5a4680c5/ENCFF959WVM.bigBed\ labelFields none\ longLabel K562 HCFC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF959WVM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF742CUG ENCSR082SHT Peak bigBed 5 Adipose tissue tissue male adult 34 years H3K27ac peak 4 1147 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/83af8edd-0fd6-4fcc-a058-e97f0f15daab/ENCFF742CUG.bigBed\ color 181,145,0\ longLabel Adipose tissue tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082SHT Peak\ track wgEncodeReg4Epigenetics_ENCFF742CUG\ type bigBed 5\ visibility squish\ encTfChipPkENCFF006YGI ovary CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF006YGI) 0 1147 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF006YGI)\ parent encTfChipPk off\ shortLabel ovary CTCF 1\ subGroups cellType=ovary factor=CTCF\ track encTfChipPkENCFF006YGI\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr2+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward 0 1147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr2+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward 1 1147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF060ZSK ENCSR000EFN Signal bigWig K562 HCFC1 ENCSR000EFN signal 2 1148 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/23b81ebb-91c5-48a4-9392-8fc23478c085/ENCFF060ZSK.bigWig\ color 254,75,173\ longLabel K562 HCFC1 ENCSR000EFN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFN Signal\ track wgEncodeReg4TfChip_ENCFF060ZSK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF922YMQ ENCSR082SHT Signal bigWig Adipose tissue tissue male adult 34 years H3K27ac signal 2 1148 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/28fe4564-9679-4733-bcd0-d6f2f7e848cb/ENCFF922YMQ.bigWig\ color 181,145,0\ longLabel Adipose tissue tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082SHT Signal\ track wgEncodeReg4Epigenetics_ENCFF922YMQ\ type bigWig\ visibility full\ encTfChipPkENCFF886WWT ovary CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF886WWT) 0 1148 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in ovary from ENCODE 3 (ENCFF886WWT)\ parent encTfChipPk off\ shortLabel ovary CTCF 2\ subGroups cellType=ovary factor=CTCF\ track encTfChipPkENCFF886WWT\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr2- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse 0 1148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr2- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse 1 1148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep2.CNhs14436.13569-146B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep2_CNhs14436_13569-146B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13569-146B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep2_CNhs14436_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13569-146B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF057AIX ENCSR000EFO Peak bigBed 5 K562 CUX1 peaks 4 1149 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/612c0a67-1340-44c1-babe-83c5025c4800/ENCFF057AIX.bigBed\ labelFields none\ longLabel K562 CUX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF057AIX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF898STF ENCSR082XEU Peak bigBed 5 Stomach tissue female embryo 107 days DNase peak 4 1149 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/302bbcbb-fb98-4e2f-ac96-4a25c8f02e0b/ENCFF898STF.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo 107 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082XEU Peak\ track wgEncodeReg4Epigenetics_ENCFF898STF\ type bigBed 5\ visibility squish\ encTfChipPkENCFF970XBE ovary EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF970XBE) 0 1149 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF970XBE)\ parent encTfChipPk off\ shortLabel ovary EP300 1\ subGroups cellType=ovary factor=EP300\ track encTfChipPkENCFF970XBE\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_fwd Tc:COBL-aRinderpest(-C)_06hrBr3+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward 0 1149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_fwd Tc:COBL-aRinderpest(-C)_06hrBr3+ bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward 1 1149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF888MTH ENCSR000EFO Signal bigWig K562 CUX1 ENCSR000EFO signal 2 1150 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/f54475a0-d98e-4740-a73e-ebfb216e2acc/ENCFF888MTH.bigWig\ color 254,75,173\ longLabel K562 CUX1 ENCSR000EFO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFO Signal\ track wgEncodeReg4TfChip_ENCFF888MTH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF636CRI ENCSR082XEU Signal bigWig Stomach tissue female embryo 107 days DNase signal 2 1150 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ef2eec52-3bd0-41d0-948c-dafc4f8d2ba6/ENCFF636CRI.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 107 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR082XEU Signal\ track wgEncodeReg4Epigenetics_ENCFF636CRI\ type bigWig\ visibility full\ encTfChipPkENCFF353CLB ovary EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF353CLB) 0 1150 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in ovary from ENCODE 3 (ENCFF353CLB)\ parent encTfChipPk off\ shortLabel ovary EP300 2\ subGroups cellType=ovary factor=EP300\ track encTfChipPkENCFF353CLB\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_rev Tc:COBL-aRinderpest(-C)_06hrBr3- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse 0 1150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_rev Tc:COBL-aRinderpest(-C)_06hrBr3- bigWig COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse 1 1150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2006hr%2c%20biol_rep3.CNhs14437.13570-146B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 06hr, biol_rep3_CNhs14437_13570-146B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13570-146B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection06hrBiolRep3_CNhs14437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13570-146B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF365NXQ ENCSR000EFP Peak bigBed 5 K562 ZNF384 peaks 4 1151 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/4648f55e-ae96-4ac4-8f75-c0da9645b388/ENCFF365NXQ.bigBed\ labelFields none\ longLabel K562 ZNF384 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF365NXQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF590BQK ENCSR083FBK Peak bigBed 5 Small intestine tissue female embryo 110 days DNase peak 4 1151 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ff7120b3-7bbb-49a4-b72a-10cddebb9687/ENCFF590BQK.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue female embryo 110 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR083FBK Peak\ track wgEncodeReg4Epigenetics_ENCFF590BQK\ type bigBed 5\ visibility squish\ encTfChipPkENCFF016APK ovary POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in ovary from ENCODE 3 (ENCFF016APK) 0 1151 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in ovary from ENCODE 3 (ENCFF016APK)\ parent encTfChipPk off\ shortLabel ovary POLR2A\ subGroups cellType=ovary factor=POLR2A\ track encTfChipPkENCFF016APK\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr1+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward 0 1151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr1+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward 1 1151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF661OFX ENCSR000EFP Signal bigWig K562 ZNF384 ENCSR000EFP signal 2 1152 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/371462c8-7704-4da7-9f02-fb4d3b84a228/ENCFF661OFX.bigWig\ color 254,75,173\ longLabel K562 ZNF384 ENCSR000EFP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFP Signal\ track wgEncodeReg4TfChip_ENCFF661OFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF282LNU ENCSR083FBK Signal bigWig Small intestine tissue female embryo 110 days DNase signal 2 1152 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/39a2aad6-e923-4478-bb8a-1f33a01b2621/ENCFF282LNU.bigWig\ color 6,218,147\ longLabel Small intestine tissue female embryo 110 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR083FBK Signal\ track wgEncodeReg4Epigenetics_ENCFF282LNU\ type bigWig\ visibility full\ encTfChipPkENCFF142JXX prostate CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF142JXX) 0 1152 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF142JXX)\ parent encTfChipPk off\ shortLabel prostate CTCF 1\ subGroups cellType=prostate_gland factor=CTCF\ track encTfChipPkENCFF142JXX\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr1- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse 0 1152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr1- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse 1 1152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep1.CNhs14438.13571-146B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep1_CNhs14438_13571-146B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13571-146B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep1_CNhs14438_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13571-146B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF647WJV ENCSR000EFQ Peak bigBed 5 K562 ZMIZ1 peaks 4 1153 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/056c3b2c-63d7-443c-b5d4-4b331b54f542/ENCFF647WJV.bigBed\ labelFields none\ longLabel K562 ZMIZ1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF647WJV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF464ATY ENCSR083HYP Peak bigBed 5 Posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 1153 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/6aea99bc-bdff-4b7d-821c-640beb565d87/ENCFF464ATY.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR083HYP Peak\ track wgEncodeReg4Epigenetics_ENCFF464ATY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF341UHT prostate CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF341UHT) 0 1153 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in prostate_gland from ENCODE 3 (ENCFF341UHT)\ parent encTfChipPk off\ shortLabel prostate CTCF 2\ subGroups cellType=prostate_gland factor=CTCF\ track encTfChipPkENCFF341UHT\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr2+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward 0 1153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr2+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward 1 1153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF042TOP ENCSR000EFQ Signal bigWig K562 ZMIZ1 ENCSR000EFQ signal 2 1154 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/f20cd1fd-239d-4807-b602-c567771905fa/ENCFF042TOP.bigWig\ color 254,75,173\ longLabel K562 ZMIZ1 ENCSR000EFQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFQ Signal\ track wgEncodeReg4TfChip_ENCFF042TOP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF713MFZ ENCSR083HYP Signal bigWig Posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 1154 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/2c23e17a-df4a-46f6-bd45-5b8eb43ce606/ENCFF713MFZ.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR083HYP Signal\ track wgEncodeReg4Epigenetics_ENCFF713MFZ\ type bigWig\ visibility full\ encTfChipPkENCFF160SYU prostate POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF160SYU) 0 1154 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF160SYU)\ parent encTfChipPk off\ shortLabel prostate POLR2A 1\ subGroups cellType=prostate_gland factor=POLR2A\ track encTfChipPkENCFF160SYU\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr2- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse 0 1154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr2- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse 1 1154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep2.CNhs14439.13572-146B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep2_CNhs14439_13572-146B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13572-146B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep2_CNhs14439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13572-146B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF182NTM ENCSR000EFS Peak bigBed 5 K562 JUN peaks 4 1155 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b0144540-16fc-4bcc-a21f-3c6d84809510/ENCFF182NTM.bigBed\ labelFields none\ longLabel K562 JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF182NTM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF565FZZ ENCSR084FHK Peak bigBed 5 GM18505 ATAC peak 4 1155 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/da24e4c1-79f5-4669-92b9-02521e84b84c/ENCFF565FZZ.bigBed\ color 2,199,185\ longLabel GM18505 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR084FHK Peak\ track wgEncodeReg4Epigenetics_ENCFF565FZZ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF674MDG prostate POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF674MDG) 0 1155 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in prostate_gland from ENCODE 3 (ENCFF674MDG)\ parent encTfChipPk off\ shortLabel prostate POLR2A 2\ subGroups cellType=prostate_gland factor=POLR2A\ track encTfChipPkENCFF674MDG\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_fwd Tc:COBL-aRinderpest(-C)_12hrBr3+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward 0 1155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_fwd Tc:COBL-aRinderpest(-C)_12hrBr3+ bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward 1 1155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF528PWS ENCSR000EFS Signal bigWig K562 JUN ENCSR000EFS signal 2 1156 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5d01038a-eff2-4ee2-9bbc-ef84e29e9dc0/ENCFF528PWS.bigWig\ color 254,75,173\ longLabel K562 JUN ENCSR000EFS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFS Signal\ track wgEncodeReg4TfChip_ENCFF528PWS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF934MOB ENCSR084FHK Signal bigWig GM18505 ATAC signal 2 1156 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/52ee7ea5-95b1-4591-91dc-9d057152932f/ENCFF934MOB.bigWig\ color 2,199,185\ longLabel GM18505 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR084FHK Signal\ track wgEncodeReg4Epigenetics_ENCFF934MOB\ type bigWig\ visibility full\ encTfChipPkENCFF409DTL retinPgmtEpi CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in retinal_pigment_epithelial_cell from ENCODE 3 (ENCFF409DTL) 0 1156 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in retinal_pigment_epithelial_cell from ENCODE 3 (ENCFF409DTL)\ parent encTfChipPk off\ shortLabel retinPgmtEpi CTCF\ subGroups cellType=retinal_pigment_epithelial_cell factor=CTCF\ track encTfChipPkENCFF409DTL\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_rev Tc:COBL-aRinderpest(-C)_12hrBr3- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse 0 1156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_rev Tc:COBL-aRinderpest(-C)_12hrBr3- bigWig COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse 1 1156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2012hr%2c%20biol_rep3.CNhs14440.13573-146B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 12hr, biol_rep3_CNhs14440_13573-146B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13573-146B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection12hrBiolRep3_CNhs14440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13573-146B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF094CMK ENCSR000EFT Peak bigBed 5 K562 GATA1 peaks 4 1157 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ec7636de-3379-4f76-a9df-35968a9c58e1/ENCFF094CMK.bigBed\ labelFields none\ longLabel K562 GATA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF094CMK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF637WNW ENCSR084RDK Peak bigBed 5 DOHH2 CTCF peak 4 1157 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/32f854e1-574b-4fda-a538-e0397db2885f/ENCFF637WNW.bigBed\ color 0,176,240\ labelFields none\ longLabel DOHH2 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR084RDK Peak\ track wgEncodeReg4Epigenetics_ENCFF637WNW\ type bigBed 5\ visibility squish\ encTfChipPkENCFF136LAP liverRLobe CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in right_lobe_of_liver from ENCODE 3 (ENCFF136LAP) 0 1157 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in right_lobe_of_liver from ENCODE 3 (ENCFF136LAP)\ parent encTfChipPk off\ shortLabel liverRLobe CTCF 2\ subGroups cellType=right_lobe_of_liver factor=CTCF\ track encTfChipPkENCFF136LAP\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr1+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward 0 1157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr1+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward 1 1157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF334KVR ENCSR000EFT Signal bigWig K562 GATA1 ENCSR000EFT signal 2 1158 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7dfe783f-3803-4820-8ab5-532584b3ddef/ENCFF334KVR.bigWig\ color 254,75,173\ longLabel K562 GATA1 ENCSR000EFT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFT Signal\ track wgEncodeReg4TfChip_ENCFF334KVR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF766DBY ENCSR084RDK Signal bigWig DOHH2 CTCF signal 2 1158 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/14b765ac-8dfd-43d9-8a9c-ceb3a0613219/ENCFF766DBY.bigWig\ color 0,176,240\ longLabel DOHH2 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR084RDK Signal\ track wgEncodeReg4Epigenetics_ENCFF766DBY\ type bigWig\ visibility full\ encTfChipPkENCFF113NNM liverRLobe CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in right_lobe_of_liver from ENCODE 3 (ENCFF113NNM) 0 1158 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in right_lobe_of_liver from ENCODE 3 (ENCFF113NNM)\ parent encTfChipPk off\ shortLabel liverRLobe CTCF 1\ subGroups cellType=right_lobe_of_liver factor=POLR2A\ track encTfChipPkENCFF113NNM\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr1- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse 0 1158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr1- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse 1 1158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep1.CNhs14441.13574-146C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep1_CNhs14441_13574-146C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13574-146C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep1_CNhs14441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13574-146C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF913QBM ENCSR000EFU Peak bigBed 5 K562 ELK1 peaks 4 1159 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/74e8fb3c-de2a-469b-b1c2-ec326085714a/ENCFF913QBM.bigBed\ labelFields none\ longLabel K562 ELK1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF913QBM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF069JZF ENCSR085MZL Peak bigBed 5 Right ventricle myocardium inferior tissue male adult 60 years DNase peak 4 1159 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/91c6980b-fc47-4111-83b7-eb64cce5c701/ENCFF069JZF.bigBed\ color 6,218,147\ labelFields none\ longLabel Right ventricle myocardium inferior tissue male adult 60 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR085MZL Peak\ track wgEncodeReg4Epigenetics_ENCFF069JZF\ type bigBed 5\ visibility squish\ encTfChipPkENCFF070ILT sigmdColon CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF070ILT) 0 1159 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF070ILT)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 1\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF070ILT\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr2+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward 0 1159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr2+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward 1 1159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF700LIO ENCSR000EFU Signal bigWig K562 ELK1 ENCSR000EFU signal 2 1160 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3caea55b-d213-4fe0-90da-7986cfdf9ad9/ENCFF700LIO.bigWig\ color 254,75,173\ longLabel K562 ELK1 ENCSR000EFU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFU Signal\ track wgEncodeReg4TfChip_ENCFF700LIO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF153OJC ENCSR085MZL Signal bigWig Right ventricle myocardium inferior tissue male adult 60 years DNase signal 2 1160 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/9b2154c5-05b9-448b-bdcb-365e726b65cb/ENCFF153OJC.bigWig\ color 6,218,147\ longLabel Right ventricle myocardium inferior tissue male adult 60 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR085MZL Signal\ track wgEncodeReg4Epigenetics_ENCFF153OJC\ type bigWig\ visibility full\ encTfChipPkENCFF668SIT sigmdColon CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF668SIT) 0 1160 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF668SIT)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 2\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF668SIT\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr2- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse 0 1160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr2- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse 1 1160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep2.CNhs14442.13575-146C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep2_CNhs14442_13575-146C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13575-146C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep2_CNhs14442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13575-146C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF110LJS ENCSR000EFV Peak bigBed 5 K562 MAX peaks 4 1161 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/fc58e20f-3e6f-44fc-9681-1a41cb7762fb/ENCFF110LJS.bigBed\ labelFields none\ longLabel K562 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF110LJS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF992JNM ENCSR085XKS Peak bigBed 5 Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 80 years DNase peak 4 1161 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/05c6aab1-922b-4457-b8f6-0ae66afdf98b/ENCFF992JNM.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 80 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR085XKS Peak\ track wgEncodeReg4Epigenetics_ENCFF992JNM\ type bigBed 5\ visibility squish\ encTfChipPkENCFF782FTD sigmdColon CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF782FTD) 0 1161 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF782FTD)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 3\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF782FTD\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_fwd Tc:COBL-aRinderpest(-C)_24hrBr3+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward 0 1161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_fwd Tc:COBL-aRinderpest(-C)_24hrBr3+ bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward 1 1161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF755MWA ENCSR000EFV Signal bigWig K562 MAX ENCSR000EFV signal 2 1162 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/6836cbb1-9b09-4b70-baee-f353b20f1eea/ENCFF755MWA.bigWig\ color 254,75,173\ longLabel K562 MAX ENCSR000EFV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFV Signal\ track wgEncodeReg4TfChip_ENCFF755MWA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF648TRC ENCSR085XKS Signal bigWig Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 80 years DNase signal 2 1162 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/67caf0e7-1ce5-41e2-9ef3-a2247a832682/ENCFF648TRC.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 80 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR085XKS Signal\ track wgEncodeReg4Epigenetics_ENCFF648TRC\ type bigWig\ visibility full\ encTfChipPkENCFF615AFS sigmdColon CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF615AFS) 0 1162 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in sigmoid_colon from ENCODE 3 (ENCFF615AFS)\ parent encTfChipPk off\ shortLabel sigmdColon CTCF 4\ subGroups cellType=sigmoid_colon factor=CTCF\ track encTfChipPkENCFF615AFS\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_rev Tc:COBL-aRinderpest(-C)_24hrBr3- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse 0 1162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_rev Tc:COBL-aRinderpest(-C)_24hrBr3- bigWig COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse 1 1162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2024hr%2c%20biol_rep3.CNhs14443.13576-146C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 24hr, biol_rep3_CNhs14443_13576-146C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13576-146C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection24hrBiolRep3_CNhs14443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13576-146C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF775DLK ENCSR000EFW Peak bigBed 5 K562 UBTF peaks 4 1163 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/539a26ac-7393-492f-96f3-14dc0f12b621/ENCFF775DLK.bigBed\ labelFields none\ longLabel K562 UBTF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF775DLK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF287UHP ENCSR086OGH Peak bigBed 5 Sigmoid colon tissue male adult 54 years ATAC peak 4 1163 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/1b862318-d014-4eeb-9e2b-cf0aafdd7298/ENCFF287UHP.bigBed\ color 2,199,185\ longLabel Sigmoid colon tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086OGH Peak\ track wgEncodeReg4Epigenetics_ENCFF287UHP\ type bigBed 5\ visibility squish\ encTfChipPkENCFF616YFR sigmdCln EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF616YFR) 0 1163 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF616YFR)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 1\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF616YFR\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr1+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward 0 1163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr1+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward 1 1163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF939UDC ENCSR000EFW Signal bigWig K562 UBTF ENCSR000EFW signal 2 1164 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/817f72cf-c126-48d0-a342-1efe133c8861/ENCFF939UDC.bigWig\ color 254,75,173\ longLabel K562 UBTF ENCSR000EFW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFW Signal\ track wgEncodeReg4TfChip_ENCFF939UDC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF049WJI ENCSR086OGH Signal bigWig Sigmoid colon tissue male adult 54 years ATAC signal 2 1164 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/d4b6163d-f6c3-41ed-bf90-cd2270617924/ENCFF049WJI.bigWig\ color 2,199,185\ longLabel Sigmoid colon tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086OGH Signal\ track wgEncodeReg4Epigenetics_ENCFF049WJI\ type bigWig\ visibility full\ encTfChipPkENCFF231LOU sigmdCln EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF231LOU) 0 1164 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF231LOU)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 2\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF231LOU\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr1- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse 0 1164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr1- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse 1 1164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep1.CNhs14444.13577-146C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep1_CNhs14444_13577-146C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13577-146C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep1_CNhs14444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13577-146C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF333ZIV ENCSR000EFX Peak bigBed 5 K562 MAZ peaks 4 1165 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/0db293fe-2c13-40ae-9847-e6c296bdeff1/ENCFF333ZIV.bigBed\ labelFields none\ longLabel K562 MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF333ZIV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF541ZIE ENCSR086PIL Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 1165 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/f727696e-d146-491a-987c-effb6ee9aada/ENCFF541ZIE.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086PIL Peak\ track wgEncodeReg4Epigenetics_ENCFF541ZIE\ type bigBed 5\ visibility squish\ encTfChipPkENCFF169FFA sigmdCln EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF169FFA) 0 1165 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF169FFA)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 3\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF169FFA\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr2+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward 0 1165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr2+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward 1 1165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF286HAP ENCSR000EFX Signal bigWig K562 MAZ ENCSR000EFX signal 2 1166 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/6d5e20b4-fe05-4381-87bb-837fc19af956/ENCFF286HAP.bigWig\ color 254,75,173\ longLabel K562 MAZ ENCSR000EFX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFX Signal\ track wgEncodeReg4TfChip_ENCFF286HAP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF302RER ENCSR086PIL Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 1166 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/ea99a513-6ada-421e-bd8d-9d2721cf7714/ENCFF302RER.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086PIL Signal\ track wgEncodeReg4Epigenetics_ENCFF302RER\ type bigWig\ visibility full\ encTfChipPkENCFF091KSY sigmdCln EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF091KSY) 0 1166 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in sigmoid_colon from ENCODE 3 (ENCFF091KSY)\ parent encTfChipPk off\ shortLabel sigmdCln EP300 4\ subGroups cellType=sigmoid_colon factor=EP300\ track encTfChipPkENCFF091KSY\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr2- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse 0 1166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr2- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse 1 1166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep2.CNhs14445.13578-146C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep2_CNhs14445_13578-146C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13578-146C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep2_CNhs14445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13578-146C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF728CDS ENCSR000EFY Peak bigBed 5 K562 ARID3A peaks 4 1167 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/a26e3e62-c8ee-41af-ac63-e46bf3796adf/ENCFF728CDS.bigBed\ labelFields none\ longLabel K562 ARID3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF728CDS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF295HAZ ENCSR086QZY Peak bigBed 5 Adrenal gland tissue female adult 51 years H3K27ac peak 4 1167 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/cf51996f-f0b4-40df-bd24-f6cccb158779/ENCFF295HAZ.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086QZY Peak\ track wgEncodeReg4Epigenetics_ENCFF295HAZ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF328BTO sigmdCln POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF328BTO) 0 1167 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF328BTO)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 1\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF328BTO\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_fwd Tc:COBL-aRinderpest(-C)_48hrBr3+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward 0 1167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_fwd Tc:COBL-aRinderpest(-C)_48hrBr3+ bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward 1 1167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF415DOV ENCSR000EFY Signal bigWig K562 ARID3A ENCSR000EFY signal 2 1168 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/6383d844-a9c5-4668-99a9-f0366b40e80d/ENCFF415DOV.bigWig\ color 254,75,173\ longLabel K562 ARID3A ENCSR000EFY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFY Signal\ track wgEncodeReg4TfChip_ENCFF415DOV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF355RRY ENCSR086QZY Signal bigWig Adrenal gland tissue female adult 51 years H3K27ac signal 2 1168 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/ba2fed5b-8e68-4e7c-8c23-c734a433a3b3/ENCFF355RRY.bigWig\ color 181,145,0\ longLabel Adrenal gland tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086QZY Signal\ track wgEncodeReg4Epigenetics_ENCFF355RRY\ type bigWig\ visibility full\ encTfChipPkENCFF182ETN sigmdCln POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF182ETN) 0 1168 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF182ETN)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 2\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF182ETN\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_rev Tc:COBL-aRinderpest(-C)_48hrBr3- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse 0 1168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_rev Tc:COBL-aRinderpest(-C)_48hrBr3- bigWig COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse 1 1168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%28-C%29%20infection%2c%2048hr%2c%20biol_rep3.CNhs14446.13579-146C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest(-C) infection, 48hr, biol_rep3_CNhs14446_13579-146C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13579-146C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest(-C)_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestCInfection48hrBiolRep3_CNhs14446_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13579-146C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF174SPM ENCSR000EFZ Peak bigBed 5 K562 UBTF peaks 4 1169 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/cf8f962b-ad33-4a39-b0cd-28afd5b09258/ENCFF174SPM.bigBed\ labelFields none\ longLabel K562 UBTF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF174SPM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF052CAL ENCSR086XCT Peak bigBed 5 Spleen tissue female adult 30 years H3K27ac peak 4 1169 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/e90cdac4-b891-4f6b-a832-2a3cb8ef2d96/ENCFF052CAL.bigBed\ color 181,145,0\ longLabel Spleen tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086XCT Peak\ track wgEncodeReg4Epigenetics_ENCFF052CAL\ type bigBed 5\ visibility squish\ encTfChipPkENCFF680JEG sigmdCln POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF680JEG) 0 1169 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF680JEG)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 3\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF680JEG\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_fwd Tc:COBL-aRinderpest_00hrBr1+ bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward 0 1169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_fwd Tc:COBL-aRinderpest_00hrBr1+ bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward 1 1169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF863MOX ENCSR000EFZ Signal bigWig K562 UBTF ENCSR000EFZ signal 2 1170 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/adeb0fe6-6d4f-4273-9fc6-dcc670ce4d1e/ENCFF863MOX.bigWig\ color 254,75,173\ longLabel K562 UBTF ENCSR000EFZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EFZ Signal\ track wgEncodeReg4TfChip_ENCFF863MOX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF805HXL ENCSR086XCT Signal bigWig Spleen tissue female adult 30 years H3K27ac signal 2 1170 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/7fb88104-61c7-4a90-946c-3f3ed310d57e/ENCFF805HXL.bigWig\ color 181,145,0\ longLabel Spleen tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR086XCT Signal\ track wgEncodeReg4Epigenetics_ENCFF805HXL\ type bigWig\ visibility full\ encTfChipPkENCFF191BTJ sigmdCln POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF191BTJ) 0 1170 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF191BTJ)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 4\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF191BTJ\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_rev Tc:COBL-aRinderpest_00hrBr1- bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse 0 1170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_rev Tc:COBL-aRinderpest_00hrBr1- bigWig COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse 1 1170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep1.CNhs14419.13553-145I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep1_CNhs14419_13553-145I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13553-145I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep1_CNhs14419_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13553-145I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF783QLQ ENCSR000EGA Peak bigBed 5 K562 TBL1XR1 peaks 4 1171 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/88492712-bee9-4e3b-b80e-2fd37ffac1b1/ENCFF783QLQ.bigBed\ labelFields none\ longLabel K562 TBL1XR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF783QLQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF494AEZ ENCSR087PFU Peak bigBed 5 IMR-90 H3K4me3 peak 4 1171 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/5bdfa243-e916-4720-9ed1-0af1febe11b0/ENCFF494AEZ.bigBed\ color 255,0,0\ longLabel IMR-90 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR087PFU Peak\ track wgEncodeReg4Epigenetics_ENCFF494AEZ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF928ZSB sigmdCln POLR2A 5 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF928ZSB) 0 1171 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in sigmoid_colon from ENCODE 3 (ENCFF928ZSB)\ parent encTfChipPk off\ shortLabel sigmdCln POLR2A 5\ subGroups cellType=sigmoid_colon factor=POLR2A\ track encTfChipPkENCFF928ZSB\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_fwd Tc:COBL-aRinderpest_00hrBr2+ bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward 0 1171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_fwd Tc:COBL-aRinderpest_00hrBr2+ bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward 1 1171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF689LKD ENCSR000EGA Signal bigWig K562 TBL1XR1 ENCSR000EGA signal 2 1172 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/5f273436-e277-4c0e-b8cb-f66e280407e9/ENCFF689LKD.bigWig\ color 254,75,173\ longLabel K562 TBL1XR1 ENCSR000EGA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGA Signal\ track wgEncodeReg4TfChip_ENCFF689LKD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF376ZIM ENCSR087PFU Signal bigWig IMR-90 H3K4me3 signal 2 1172 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/afa00ae0-3f92-4fee-ac7b-1852e6adb6fc/ENCFF376ZIM.bigWig\ color 255,0,0\ longLabel IMR-90 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR087PFU Signal\ track wgEncodeReg4Epigenetics_ENCFF376ZIM\ type bigWig\ visibility full\ encTfChipPkENCFF141MTA smoothMuscle CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in smooth_muscle_cell from ENCODE 3 (ENCFF141MTA) 0 1172 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in smooth_muscle_cell from ENCODE 3 (ENCFF141MTA)\ parent encTfChipPk off\ shortLabel smoothMuscle CTCF\ subGroups cellType=smooth_muscle_cell factor=CTCF\ track encTfChipPkENCFF141MTA\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_rev Tc:COBL-aRinderpest_00hrBr2- bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse 0 1172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_rev Tc:COBL-aRinderpest_00hrBr2- bigWig COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse 1 1172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep2.CNhs14420.13554-145I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep2_CNhs14420_13554-145I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13554-145I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep2_CNhs14420_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13554-145I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF899VEC ENCSR000EGB Peak bigBed 5 K562 TBL1XR1 peaks 4 1173 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e31e0ed3-8462-4609-9c1f-edfe99322552/ENCFF899VEC.bigBed\ labelFields none\ longLabel K562 TBL1XR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF899VEC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF613KJU ENCSR088ZGM Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K27ac peak 4 1173 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e2860547-f5bb-4c3e-81d3-9386bfa191f6/ENCFF613KJU.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR088ZGM Peak\ track wgEncodeReg4Epigenetics_ENCFF613KJU\ type bigBed 5\ visibility squish\ encTfChipPkENCFF540DVR spleen CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF540DVR) 0 1173 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF540DVR)\ parent encTfChipPk off\ shortLabel spleen CTCF 1\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF540DVR\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_fwd Tc:COBL-aRinderpest_00hrBr3+ bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward 0 1173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_fwd Tc:COBL-aRinderpest_00hrBr3+ bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward 1 1173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF422CNL ENCSR000EGB Signal bigWig K562 TBL1XR1 ENCSR000EGB signal 2 1174 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ebb9384d-fa0c-42cb-a104-5487dfbec591/ENCFF422CNL.bigWig\ color 254,75,173\ longLabel K562 TBL1XR1 ENCSR000EGB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGB Signal\ track wgEncodeReg4TfChip_ENCFF422CNL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF412MYA ENCSR088ZGM Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K27ac signal 2 1174 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/20089e97-99a4-4b2f-b45f-2ce867c4ea40/ENCFF412MYA.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR088ZGM Signal\ track wgEncodeReg4Epigenetics_ENCFF412MYA\ type bigWig\ visibility full\ encTfChipPkENCFF234VTM spleen CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF234VTM) 0 1174 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF234VTM)\ parent encTfChipPk off\ shortLabel spleen CTCF 2\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF234VTM\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_rev Tc:COBL-aRinderpest_00hrBr3- bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse 0 1174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_rev Tc:COBL-aRinderpest_00hrBr3- bigWig COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse 1 1174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2000hr%2c%20biol_rep3.CNhs14421.13555-145I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 00hr, biol_rep3_CNhs14421_13555-145I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13555-145I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_00hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection00hrBiolRep3_CNhs14421_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13555-145I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF721RTS ENCSR000EGC Peak bigBed 5 K562 RCOR1 peaks 4 1175 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/8b93d560-9a04-4340-b435-4753bad8b2d8/ENCFF721RTS.bigBed\ labelFields none\ longLabel K562 RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF721RTS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF735VKJ ENCSR089DTY Peak bigBed 5 Omental fat pad tissue male adult 37 years CTCF peak 4 1175 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/51fd5c17-e698-41fe-a37a-d32cc0d51fa7/ENCFF735VKJ.bigBed\ color 0,176,240\ labelFields none\ longLabel Omental fat pad tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR089DTY Peak\ track wgEncodeReg4Epigenetics_ENCFF735VKJ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF248QUD spleen CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF248QUD) 0 1175 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF248QUD)\ parent encTfChipPk off\ shortLabel spleen CTCF 3\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF248QUD\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_fwd Tc:COBL-aRinderpest_06hrBr1+ bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward 0 1175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_fwd Tc:COBL-aRinderpest_06hrBr1+ bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward 1 1175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF211CGZ ENCSR000EGC Signal bigWig K562 RCOR1 ENCSR000EGC signal 2 1176 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/8db6a729-56a4-472d-82fd-ad6fb1c98177/ENCFF211CGZ.bigWig\ color 254,75,173\ longLabel K562 RCOR1 ENCSR000EGC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGC Signal\ track wgEncodeReg4TfChip_ENCFF211CGZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF264NFG ENCSR089DTY Signal bigWig Omental fat pad tissue male adult 37 years CTCF signal 2 1176 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7745d1c9-9ceb-48e4-8ecf-2c869a567b73/ENCFF264NFG.bigWig\ color 0,176,240\ longLabel Omental fat pad tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR089DTY Signal\ track wgEncodeReg4Epigenetics_ENCFF264NFG\ type bigWig\ visibility full\ encTfChipPkENCFF340BQM spleen CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF340BQM) 0 1176 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF340BQM)\ parent encTfChipPk off\ shortLabel spleen CTCF 4\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF340BQM\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_rev Tc:COBL-aRinderpest_06hrBr1- bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse 0 1176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_rev Tc:COBL-aRinderpest_06hrBr1- bigWig COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse 1 1176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep1.CNhs14422.13556-146A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep1_CNhs14422_13556-146A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13556-146A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep1_CNhs14422_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13556-146A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF990JHI ENCSR000EGD Peak bigBed 5 K562 BACH1 peaks 4 1177 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/913c9c7e-c5b5-40aa-b500-136623223ad3/ENCFF990JHI.bigBed\ labelFields none\ longLabel K562 BACH1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF990JHI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF943XWV ENCSR089KIJ Peak bigBed 5 WTC11 genetically modified insertion using TALEN inserting M. musculus Neurog2 ATAC peak 4 1177 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/17/9a32c53a-4ecc-4f0e-b8fb-553ead14c22c/ENCFF943XWV.bigBed\ color 2,199,185\ longLabel WTC11 genetically modified insertion using TALEN inserting M. musculus Neurog2 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR089KIJ Peak\ track wgEncodeReg4Epigenetics_ENCFF943XWV\ type bigBed 5\ visibility squish\ encTfChipPkENCFF068YLN spleen CTCF 5 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF068YLN) 0 1177 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in spleen from ENCODE 3 (ENCFF068YLN)\ parent encTfChipPk off\ shortLabel spleen CTCF 5\ subGroups cellType=spleen factor=CTCF\ track encTfChipPkENCFF068YLN\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_fwd Tc:COBL-aRinderpest_06hrBr2+ bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward 0 1177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_fwd Tc:COBL-aRinderpest_06hrBr2+ bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward 1 1177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF886PIZ ENCSR000EGD Signal bigWig K562 BACH1 ENCSR000EGD signal 2 1178 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/eaf2af15-89a1-4867-9309-a80a44895b95/ENCFF886PIZ.bigWig\ color 254,75,173\ longLabel K562 BACH1 ENCSR000EGD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGD Signal\ track wgEncodeReg4TfChip_ENCFF886PIZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF443JTH ENCSR089KIJ Signal bigWig WTC11 genetically modified insertion using TALEN inserting M. musculus Neurog2 ATAC signal 2 1178 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/17/ba068ff1-3b93-4191-90bb-2b07adbbce55/ENCFF443JTH.bigWig\ color 2,199,185\ longLabel WTC11 genetically modified insertion using TALEN inserting M. musculus Neurog2 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR089KIJ Signal\ track wgEncodeReg4Epigenetics_ENCFF443JTH\ type bigWig\ visibility full\ encTfChipPkENCFF290BOD spleen POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF290BOD) 0 1178 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF290BOD)\ parent encTfChipPk off\ shortLabel spleen POLR2A 1\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF290BOD\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_rev Tc:COBL-aRinderpest_06hrBr2- bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse 0 1178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_rev Tc:COBL-aRinderpest_06hrBr2- bigWig COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse 1 1178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep2.CNhs14423.13557-146A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep2_CNhs14423_13557-146A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13557-146A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep2_CNhs14423_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13557-146A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF226VMS ENCSR000EGE Peak bigBed 5 K562 EP300 peaks 4 1179 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/7afc5346-df61-4582-89ab-64feb50db431/ENCFF226VMS.bigBed\ labelFields none\ longLabel K562 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF226VMS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF979TCT ENCSR089NBS Peak bigBed 5 Heart right ventricle tissue male adult 73 years CTCF peak 4 1179 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/8125d84e-b77d-48aa-b93a-076a3f7a8649/ENCFF979TCT.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart right ventricle tissue male adult 73 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR089NBS Peak\ track wgEncodeReg4Epigenetics_ENCFF979TCT\ type bigBed 5\ visibility squish\ encTfChipPkENCFF128AIK spleen POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF128AIK) 0 1179 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF128AIK)\ parent encTfChipPk off\ shortLabel spleen POLR2A 2\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF128AIK\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_fwd Tc:COBL-aRinderpest_06hrBr3+ bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward 0 1179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_fwd Tc:COBL-aRinderpest_06hrBr3+ bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward 1 1179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF636VVR ENCSR000EGE Signal bigWig K562 EP300 ENCSR000EGE signal 2 1180 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/4b375673-ae21-4710-ac2d-18c7c1582db2/ENCFF636VVR.bigWig\ color 254,75,173\ longLabel K562 EP300 ENCSR000EGE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGE Signal\ track wgEncodeReg4TfChip_ENCFF636VVR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF688KIH ENCSR089NBS Signal bigWig Heart right ventricle tissue male adult 73 years CTCF signal 2 1180 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/a389b96e-77e2-479f-8b67-9ba1e1899abf/ENCFF688KIH.bigWig\ color 0,176,240\ longLabel Heart right ventricle tissue male adult 73 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR089NBS Signal\ track wgEncodeReg4Epigenetics_ENCFF688KIH\ type bigWig\ visibility full\ encTfChipPkENCFF323FPP spleen POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF323FPP) 0 1180 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF323FPP)\ parent encTfChipPk off\ shortLabel spleen POLR2A 3\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF323FPP\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_rev Tc:COBL-aRinderpest_06hrBr3- bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse 0 1180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_rev Tc:COBL-aRinderpest_06hrBr3- bigWig COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse 1 1180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2006hr%2c%20biol_rep3.CNhs14424.13558-146A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 06hr, biol_rep3_CNhs14424_13558-146A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13558-146A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_06hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection06hrBiolRep3_CNhs14424_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13558-146A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF214YGX ENCSR000EGF Peak bigBed 5 K562 POLR2AphosphoS2 peaks 4 1181 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/bfad9ce3-810f-41f1-8661-ed8ed296d086/ENCFF214YGX.bigBed\ labelFields none\ longLabel K562 POLR2AphosphoS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF214YGX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF557YVG ENCSR090IDV Peak bigBed 5 Tibial artery tissue male adult 54 years DNase peak 4 1181 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/1c13dae7-71ad-49d8-a9cc-6c64ad88e153/ENCFF557YVG.bigBed\ color 6,218,147\ labelFields none\ longLabel Tibial artery tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR090IDV Peak\ track wgEncodeReg4Epigenetics_ENCFF557YVG\ type bigBed 5\ visibility squish\ encTfChipPkENCFF379SGB spleen POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF379SGB) 0 1181 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in spleen from ENCODE 3 (ENCFF379SGB)\ parent encTfChipPk off\ shortLabel spleen POLR2A 4\ subGroups cellType=spleen factor=POLR2A\ track encTfChipPkENCFF379SGB\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_fwd Tc:COBL-aRinderpest_12hrBr1+ bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward 0 1181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_fwd Tc:COBL-aRinderpest_12hrBr1+ bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward 1 1181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF434PYZ ENCSR000EGF Signal bigWig K562 POLR2AphosphoS2 ENCSR000EGF signal 2 1182 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/eecb6be9-040c-4d2d-9d29-b2320d2f1933/ENCFF434PYZ.bigWig\ color 254,75,173\ longLabel K562 POLR2AphosphoS2 ENCSR000EGF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGF Signal\ track wgEncodeReg4TfChip_ENCFF434PYZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF586KKK ENCSR090IDV Signal bigWig Tibial artery tissue male adult 54 years DNase signal 2 1182 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/4cb79f91-c299-459a-8fc8-4157620959b3/ENCFF586KKK.bigWig\ color 6,218,147\ longLabel Tibial artery tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR090IDV Signal\ track wgEncodeReg4Epigenetics_ENCFF586KKK\ type bigWig\ visibility full\ encTfChipPkENCFF481CNC stomach CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF481CNC) 0 1182 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF481CNC)\ parent encTfChipPk off\ shortLabel stomach CTCF 1\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF481CNC\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_rev Tc:COBL-aRinderpest_12hrBr1- bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse 0 1182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_rev Tc:COBL-aRinderpest_12hrBr1- bigWig COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse 1 1182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep1.CNhs14425.13559-146A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep1_CNhs14425_13559-146A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13559-146A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep1_CNhs14425_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13559-146A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF216EEJ ENCSR000EGG Peak bigBed 5 K562 RCOR1 peaks 4 1183 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/c3120741-f25e-4dc1-9f7e-a568b48877e2/ENCFF216EEJ.bigBed\ labelFields none\ longLabel K562 RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF216EEJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF244EDE ENCSR090SMP Peak bigBed 5 NCI-H929 DNase peak 4 1183 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/19cba5d6-95c8-41df-8223-b216ff4ff5db/ENCFF244EDE.bigBed\ color 6,218,147\ labelFields none\ longLabel NCI-H929 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR090SMP Peak\ track wgEncodeReg4Epigenetics_ENCFF244EDE\ type bigBed 5\ visibility squish\ encTfChipPkENCFF825XAC stomach CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF825XAC) 0 1183 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF825XAC)\ parent encTfChipPk off\ shortLabel stomach CTCF 2\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF825XAC\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_fwd Tc:COBL-aRinderpest_12hrBr2+ bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward 0 1183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_fwd Tc:COBL-aRinderpest_12hrBr2+ bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward 1 1183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF857APX ENCSR000EGG Signal bigWig K562 RCOR1 ENCSR000EGG signal 2 1184 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/81a07f21-9f38-48ff-8af6-869a1c1af5a0/ENCFF857APX.bigWig\ color 254,75,173\ longLabel K562 RCOR1 ENCSR000EGG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGG Signal\ track wgEncodeReg4TfChip_ENCFF857APX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF146ZBO ENCSR090SMP Signal bigWig NCI-H929 DNase signal 2 1184 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/0a85384a-ffcb-4b02-9062-415fb6e45a75/ENCFF146ZBO.bigWig\ color 6,218,147\ longLabel NCI-H929 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR090SMP Signal\ track wgEncodeReg4Epigenetics_ENCFF146ZBO\ type bigWig\ visibility full\ encTfChipPkENCFF220VAH stomach CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF220VAH) 0 1184 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF220VAH)\ parent encTfChipPk off\ shortLabel stomach CTCF 3\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF220VAH\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_rev Tc:COBL-aRinderpest_12hrBr2- bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse 0 1184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_rev Tc:COBL-aRinderpest_12hrBr2- bigWig COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse 1 1184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep2.CNhs14426.13560-146A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep2_CNhs14426_13560-146A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13560-146A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep2_CNhs14426_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13560-146A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF071YKK ENCSR000EGI Peak bigBed 5 K562 MAFF peaks 4 1185 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/c2189642-7a66-4a15-8978-88a832a2cbff/ENCFF071YKK.bigBed\ labelFields none\ longLabel K562 MAFF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF071YKK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF393OTE ENCSR091KXI Peak bigBed 5 Tibial nerve tissue male adult 54 years H3K27ac peak 4 1185 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/9c13fd57-2c5e-4d96-88d9-4ee34203ad05/ENCFF393OTE.bigBed\ color 181,145,0\ longLabel Tibial nerve tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR091KXI Peak\ track wgEncodeReg4Epigenetics_ENCFF393OTE\ type bigBed 5\ visibility squish\ encTfChipPkENCFF831BFL stomach CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF831BFL) 0 1185 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in stomach from ENCODE 3 (ENCFF831BFL)\ parent encTfChipPk off\ shortLabel stomach CTCF 4\ subGroups cellType=stomach factor=CTCF\ track encTfChipPkENCFF831BFL\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_fwd Tc:COBL-aRinderpest_12hrBr3+ bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward 0 1185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_fwd Tc:COBL-aRinderpest_12hrBr3+ bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward 1 1185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF750ZMW ENCSR000EGI Signal bigWig K562 MAFF ENCSR000EGI signal 2 1186 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/56d3fa80-0736-4d7b-b3f5-f8f40271a78f/ENCFF750ZMW.bigWig\ color 254,75,173\ longLabel K562 MAFF ENCSR000EGI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGI Signal\ track wgEncodeReg4TfChip_ENCFF750ZMW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF758AQR ENCSR091KXI Signal bigWig Tibial nerve tissue male adult 54 years H3K27ac signal 2 1186 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/ad36d94d-b5c3-47aa-893c-45811eb15f66/ENCFF758AQR.bigWig\ color 181,145,0\ longLabel Tibial nerve tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR091KXI Signal\ track wgEncodeReg4Epigenetics_ENCFF758AQR\ type bigWig\ visibility full\ encTfChipPkENCFF856BRS stomach EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF856BRS) 0 1186 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF856BRS)\ parent encTfChipPk off\ shortLabel stomach EP300 1\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF856BRS\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_rev Tc:COBL-aRinderpest_12hrBr3- bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse 0 1186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_rev Tc:COBL-aRinderpest_12hrBr3- bigWig COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse 1 1186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2012hr%2c%20biol_rep3.CNhs14427.13561-146A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 12hr, biol_rep3_CNhs14427_13561-146A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13561-146A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_12hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection12hrBiolRep3_CNhs14427_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13561-146A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF988ZRU ENCSR000EGJ Peak bigBed 5 K562 MYC peaks 4 1187 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/65665235-e2d8-4221-bb4b-51f3643ec6db/ENCFF988ZRU.bigBed\ labelFields none\ longLabel K562 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF988ZRU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF577XTW ENCSR091YVK Peak bigBed 5 K562 treated with 1 μM EED226 for 48 hours ATAC peak 4 1187 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/a0b75dec-c1c7-40d5-8fd3-35aac268239f/ENCFF577XTW.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM EED226 for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR091YVK Peak\ track wgEncodeReg4Epigenetics_ENCFF577XTW\ type bigBed 5\ visibility squish\ encTfChipPkENCFF904COM stomach EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF904COM) 0 1187 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF904COM)\ parent encTfChipPk off\ shortLabel stomach EP300 2\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF904COM\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_fwd Tc:COBL-aRinderpest_24hrBr1+ bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward 0 1187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_fwd Tc:COBL-aRinderpest_24hrBr1+ bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward 1 1187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF801QJW ENCSR000EGJ Signal bigWig K562 MYC ENCSR000EGJ signal 2 1188 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/780dfa7f-c7c6-49fd-8ed4-86963bd1f29c/ENCFF801QJW.bigWig\ color 254,75,173\ longLabel K562 MYC ENCSR000EGJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGJ Signal\ track wgEncodeReg4TfChip_ENCFF801QJW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF868SQN ENCSR091YVK Signal bigWig K562 treated with 1 μM EED226 for 48 hours ATAC signal 2 1188 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/cb058669-84f8-4ccc-ae87-17d843803c77/ENCFF868SQN.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM EED226 for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR091YVK Signal\ track wgEncodeReg4Epigenetics_ENCFF868SQN\ type bigWig\ visibility full\ encTfChipPkENCFF469SGL stomach EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF469SGL) 0 1188 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in stomach from ENCODE 3 (ENCFF469SGL)\ parent encTfChipPk off\ shortLabel stomach EP300 3\ subGroups cellType=stomach factor=EP300\ track encTfChipPkENCFF469SGL\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_rev Tc:COBL-aRinderpest_24hrBr1- bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse 0 1188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_rev Tc:COBL-aRinderpest_24hrBr1- bigWig COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse 1 1188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep1.CNhs14428.13562-146A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep1_CNhs14428_13562-146A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13562-146A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep1_CNhs14428_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13562-146A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF400DFR ENCSR000EGM Peak bigBed 5 K562 CTCF peaks 4 1189 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e7c256e1-e41c-43d5-83af-58b9db00c73c/ENCFF400DFR.bigBed\ labelFields none\ longLabel K562 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF400DFR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF115YMO ENCSR092OFK Peak bigBed 5 Skin of body tissue female embryo 82 days DNase peak 4 1189 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/b7ae406c-7a0c-4f1f-baa9-cad180a11bb1/ENCFF115YMO.bigBed\ color 6,218,147\ labelFields none\ longLabel Skin of body tissue female embryo 82 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092OFK Peak\ track wgEncodeReg4Epigenetics_ENCFF115YMO\ type bigBed 5\ visibility squish\ encTfChipPkENCFF827SHP stomach POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF827SHP) 0 1189 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF827SHP)\ parent encTfChipPk off\ shortLabel stomach POLR2A 1\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF827SHP\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_fwd Tc:COBL-aRinderpest_24hrBr2+ bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward 0 1189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_fwd Tc:COBL-aRinderpest_24hrBr2+ bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward 1 1189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF682MFJ ENCSR000EGM Signal bigWig K562 CTCF ENCSR000EGM signal 2 1190 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/694603d6-5903-45ed-b72b-8ac7d6657423/ENCFF682MFJ.bigWig\ color 254,75,173\ longLabel K562 CTCF ENCSR000EGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGM Signal\ track wgEncodeReg4TfChip_ENCFF682MFJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF530QBT ENCSR092OFK Signal bigWig Skin of body tissue female embryo 82 days DNase signal 2 1190 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d02f3083-b4f9-4a86-bde3-72edabb7ef70/ENCFF530QBT.bigWig\ color 6,218,147\ longLabel Skin of body tissue female embryo 82 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092OFK Signal\ track wgEncodeReg4Epigenetics_ENCFF530QBT\ type bigWig\ visibility full\ encTfChipPkENCFF880FUR stomach POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF880FUR) 0 1190 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF880FUR)\ parent encTfChipPk off\ shortLabel stomach POLR2A 2\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF880FUR\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_rev Tc:COBL-aRinderpest_24hrBr2- bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse 0 1190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_rev Tc:COBL-aRinderpest_24hrBr2- bigWig COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse 1 1190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep2.CNhs14429.13563-146A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep2_CNhs14429_13563-146A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13563-146A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep2_CNhs14429_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13563-146A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF830LVJ ENCSR000EGN Peak bigBed 5 K562 JUND peaks 4 1191 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/32b433c9-1de8-4211-8502-9b2c93805f8d/ENCFF830LVJ.bigBed\ labelFields none\ longLabel K562 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF830LVJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF386MFG ENCSR092SRS Peak bigBed 5 Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours ATAC peak 4 1191 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/3cf643f3-5d46-43cb-aa3c-28bfbcc880ce/ENCFF386MFG.bigBed\ color 2,199,185\ longLabel Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092SRS Peak\ track wgEncodeReg4Epigenetics_ENCFF386MFG\ type bigBed 5\ visibility squish\ encTfChipPkENCFF905CUU stomach POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF905CUU) 0 1191 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF905CUU)\ parent encTfChipPk off\ shortLabel stomach POLR2A 3\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF905CUU\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_fwd Tc:COBL-aRinderpest_24hrBr3+ bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward 0 1191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_fwd Tc:COBL-aRinderpest_24hrBr3+ bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward 1 1191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF985WIP ENCSR000EGN Signal bigWig K562 JUND ENCSR000EGN signal 2 1192 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/fccc751f-33f3-419e-921f-cc6e34689039/ENCFF985WIP.bigWig\ color 254,75,173\ longLabel K562 JUND ENCSR000EGN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGN Signal\ track wgEncodeReg4TfChip_ENCFF985WIP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF438AFY ENCSR092SRS Signal bigWig Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours ATAC signal 2 1192 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/a0b8a5ba-34e7-49f6-b594-25e817773507/ENCFF438AFY.bigWig\ color 2,199,185\ longLabel Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092SRS Signal\ track wgEncodeReg4Epigenetics_ENCFF438AFY\ type bigWig\ visibility full\ encTfChipPkENCFF280GHS stomach POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF280GHS) 0 1192 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in stomach from ENCODE 3 (ENCFF280GHS)\ parent encTfChipPk off\ shortLabel stomach POLR2A 4\ subGroups cellType=stomach factor=POLR2A\ track encTfChipPkENCFF280GHS\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_rev Tc:COBL-aRinderpest_24hrBr3- bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse 0 1192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_rev Tc:COBL-aRinderpest_24hrBr3- bigWig COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse 1 1192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2024hr%2c%20biol_rep3.CNhs14430.13564-146A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 24hr, biol_rep3_CNhs14430_13564-146A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13564-146A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_24hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection24hrBiolRep3_CNhs14430_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13564-146A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF734TCX ENCSR000EGO Peak bigBed 5 K562 RFX5 peaks 4 1193 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/147a885e-711b-44ee-8b13-1c901aaa8f29/ENCFF734TCX.bigBed\ labelFields none\ longLabel K562 RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF734TCX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF257LSY ENCSR092VKJ Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 1193 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/4af41527-4193-4e84-8495-48cc9c3eec7c/ENCFF257LSY.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092VKJ Peak\ track wgEncodeReg4Epigenetics_ENCFF257LSY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF719VDM subcutAdip CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF719VDM) 0 1193 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF719VDM)\ parent encTfChipPk off\ shortLabel subcutAdip CTCF 1\ subGroups cellType=subcutaneous_adipose_tissue factor=CTCF\ track encTfChipPkENCFF719VDM\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_fwd Tc:COBL-aRinderpest_48hrBr1+ bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward 0 1193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_fwd Tc:COBL-aRinderpest_48hrBr1+ bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward 1 1193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr1+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF817FLM ENCSR000EGO Signal bigWig K562 RFX5 ENCSR000EGO signal 2 1194 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/a3ba2df0-f19d-4746-be30-f79f95afd326/ENCFF817FLM.bigWig\ color 254,75,173\ longLabel K562 RFX5 ENCSR000EGO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGO Signal\ track wgEncodeReg4TfChip_ENCFF817FLM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF891CZD ENCSR092VKJ Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 1194 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/34685c0f-cb7d-43f4-9f88-b0e0fcc99965/ENCFF891CZD.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092VKJ Signal\ track wgEncodeReg4Epigenetics_ENCFF891CZD\ type bigWig\ visibility full\ encTfChipPkENCFF688KFE subcutAdip CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF688KFE) 0 1194 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF688KFE)\ parent encTfChipPk off\ shortLabel subcutAdip CTCF 2\ subGroups cellType=subcutaneous_adipose_tissue factor=CTCF\ track encTfChipPkENCFF688KFE\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_rev Tc:COBL-aRinderpest_48hrBr1- bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse 0 1194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_rev Tc:COBL-aRinderpest_48hrBr1- bigWig COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse 1 1194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep1.CNhs14431.13565-146B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep1_CNhs14431_13565-146B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13565-146B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr1-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep1_CNhs14431_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13565-146B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF709RXX ENCSR000EGQ Peak bigBed 5 K562 NFYB peaks 4 1195 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/94447f0d-b004-40c2-8180-7521ef2709db/ENCFF709RXX.bigBed\ labelFields none\ longLabel K562 NFYB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF709RXX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF133GNY ENCSR092WMD Peak bigBed 5 Left renal cortex interstitium tissue male embryo 105 days DNase peak 4 1195 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/d62e15cb-f7c5-4f6b-ba69-87306e0f8ef2/ENCFF133GNY.bigBed\ color 6,218,147\ labelFields none\ longLabel Left renal cortex interstitium tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092WMD Peak\ track wgEncodeReg4Epigenetics_ENCFF133GNY\ type bigBed 5\ visibility squish\ encTfChipPkENCFF042DNR subcutAdp EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF042DNR) 0 1195 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF042DNR)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 1\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF042DNR\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_fwd Tc:COBL-aRinderpest_48hrBr2+ bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward 0 1195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_fwd Tc:COBL-aRinderpest_48hrBr2+ bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward 1 1195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr2+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF608VTZ ENCSR000EGQ Signal bigWig K562 NFYB ENCSR000EGQ signal 2 1196 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/3fdb1d4b-bfd2-4897-92d1-7a4e534a8807/ENCFF608VTZ.bigWig\ color 254,75,173\ longLabel K562 NFYB ENCSR000EGQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGQ Signal\ track wgEncodeReg4TfChip_ENCFF608VTZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF004BYH ENCSR092WMD Signal bigWig Left renal cortex interstitium tissue male embryo 105 days DNase signal 2 1196 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/e2bb8cd6-2736-4860-a94f-1918f228e20c/ENCFF004BYH.bigWig\ color 6,218,147\ longLabel Left renal cortex interstitium tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR092WMD Signal\ track wgEncodeReg4Epigenetics_ENCFF004BYH\ type bigWig\ visibility full\ encTfChipPkENCFF191VCL subcutAdp EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF191VCL) 0 1196 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF191VCL)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 2\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF191VCL\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_rev Tc:COBL-aRinderpest_48hrBr2- bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse 0 1196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_rev Tc:COBL-aRinderpest_48hrBr2- bigWig COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse 1 1196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep2.CNhs14432.13566-146B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep2_CNhs14432_13566-146B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13566-146B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr2-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep2_CNhs14432_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13566-146B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF666BET ENCSR000EGR Peak bigBed 5 K562 NFYA peaks 4 1197 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/a1d85bf7-f52a-41af-8dfd-e3fb14ecb245/ENCFF666BET.bigBed\ labelFields none\ longLabel K562 NFYA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF666BET\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF628TCI ENCSR094PSL Peak bigBed 5 Middle frontal area 46 tissue female adult 88 years CTCF peak 4 1197 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/8e6e9e8c-0b15-4ec2-941c-b15e09fa618f/ENCFF628TCI.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 88 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR094PSL Peak\ track wgEncodeReg4Epigenetics_ENCFF628TCI\ type bigBed 5\ visibility squish\ encTfChipPkENCFF434OJH subcutAdp EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF434OJH) 0 1197 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF434OJH)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 3\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF434OJH\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_fwd Tc:COBL-aRinderpest_48hrBr3+ bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward 0 1197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_fwd Tc:COBL-aRinderpest_48hrBr3+ bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward 1 1197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr3+\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=forward\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF427FTJ ENCSR000EGR Signal bigWig K562 NFYA ENCSR000EGR signal 2 1198 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/5bee03e5-87c0-40b0-8e30-45109b16825f/ENCFF427FTJ.bigWig\ color 254,75,173\ longLabel K562 NFYA ENCSR000EGR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGR Signal\ track wgEncodeReg4TfChip_ENCFF427FTJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF294XWZ ENCSR094PSL Signal bigWig Middle frontal area 46 tissue female adult 88 years CTCF signal 2 1198 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/904810fe-7e4d-4607-aaf4-641730158cc3/ENCFF294XWZ.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 88 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR094PSL Signal\ track wgEncodeReg4Epigenetics_ENCFF294XWZ\ type bigWig\ visibility full\ encTfChipPkENCFF085MWN subcutAdp EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF085MWN) 0 1198 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in subcutaneous_adipose_tissue from ENCODE 3 (ENCFF085MWN)\ parent encTfChipPk off\ shortLabel subcutAdp EP300 4\ subGroups cellType=subcutaneous_adipose_tissue factor=EP300\ track encTfChipPkENCFF085MWN\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_rev Tc:COBL-aRinderpest_48hrBr3- bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse 0 1198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:COBL-aRinderpest_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_rev Tc:COBL-aRinderpest_48hrBr3- bigWig COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse 1 1198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/COBL-a%20rinderpest%20infection%2c%2048hr%2c%20biol_rep3.CNhs14434.13567-146B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel COBL-a rinderpest infection, 48hr, biol_rep3_CNhs14434_13567-146B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13567-146B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:COBL-aRinderpest_48hrBr3-\ subGroups sequenceTech=hCAGE category=Rinderpest_infection_series strand=reverse\ track COBLaRinderpestInfection48hrBiolRep3_CNhs14434_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13567-146B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF923NJI ENCSR000EGV Peak bigBed 5 K562 BHLHE40 peaks 4 1199 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/16cc647c-7c36-45ee-9c1b-0b7b3e4e0845/ENCFF923NJI.bigBed\ labelFields none\ longLabel K562 BHLHE40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF923NJI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF639CTR ENCSR094QFZ Peak bigBed 5 Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC peak 4 1199 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/4cd8282d-04fd-426d-ae32-7cbc9a93a783/ENCFF639CTR.bigBed\ color 2,199,185\ longLabel Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR094QFZ Peak\ track wgEncodeReg4Epigenetics_ENCFF639CTR\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward 0 1199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward 1 1199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF687WWO suprpbSkin CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF687WWO) 0 1199 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF687WWO)\ parent encTfChipPk off\ shortLabel suprpbSkin CTCF 1\ subGroups cellType=suprapubic_skin factor=CTCF\ track encTfChipPkENCFF687WWO\ wgEncodeReg4TfChip_ENCFF057JQO ENCSR000EGV Signal bigWig K562 BHLHE40 ENCSR000EGV signal 2 1200 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/c2d65955-bd06-442d-a907-5f5480657c27/ENCFF057JQO.bigWig\ color 254,75,173\ longLabel K562 BHLHE40 ENCSR000EGV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGV Signal\ track wgEncodeReg4TfChip_ENCFF057JQO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF881SZZ ENCSR094QFZ Signal bigWig Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC signal 2 1200 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/7918d16e-135d-473c-b0b8-f0e8828192a5/ENCFF881SZZ.bigWig\ color 2,199,185\ longLabel Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR094QFZ Signal\ track wgEncodeReg4Epigenetics_ENCFF881SZZ\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse 0 1200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse 1 1200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep1%20%28A1%20T0%29.CNhs11918.12662-134I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep1 (A1 T0)_CNhs11918_12662-134I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12662-134I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep1A1T0_CNhs11918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12662-134I7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF102XCU suprpbSkin CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF102XCU) 0 1200 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in suprapubic_skin from ENCODE 3 (ENCFF102XCU)\ parent encTfChipPk off\ shortLabel suprpbSkin CTCF 2\ subGroups cellType=suprapubic_skin factor=CTCF\ track encTfChipPkENCFF102XCU\ wgEncodeReg4TfChip_ENCFF582XIX ENCSR000EGW Peak bigBed 5 K562 SMC3 peaks 4 1201 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/c086b819-49e6-4a4c-8864-a32ab313739e/ENCFF582XIX.bigBed\ labelFields none\ longLabel K562 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF582XIX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF294HVT ENCSR094VJC Peak bigBed 5 Adrenal gland tissue male adult 37 years H3K27ac peak 4 1201 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/a0d94c62-ade4-4242-8630-6b68b3079306/ENCFF294HVT.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR094VJC Peak\ track wgEncodeReg4Epigenetics_ENCFF294HVT\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward 0 1201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward 1 1201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF783HDF suprpbSkin EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF783HDF) 0 1201 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF783HDF)\ parent encTfChipPk off\ shortLabel suprpbSkin EP300 4\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF783HDF\ wgEncodeReg4TfChip_ENCFF469OWD ENCSR000EGW Signal bigWig K562 SMC3 ENCSR000EGW signal 2 1202 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/06/7e32ff45-ab58-4118-8771-a0469086b85e/ENCFF469OWD.bigWig\ color 254,75,173\ longLabel K562 SMC3 ENCSR000EGW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGW Signal\ track wgEncodeReg4TfChip_ENCFF469OWD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF860MMV ENCSR094VJC Signal bigWig Adrenal gland tissue male adult 37 years H3K27ac signal 2 1202 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/b7d22290-6a2d-43ee-8670-c4cc795be925/ENCFF860MMV.bigWig\ color 181,145,0\ longLabel Adrenal gland tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR094VJC Signal\ track wgEncodeReg4Epigenetics_ENCFF860MMV\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse 0 1202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse 1 1202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep2%20%28A2%20T0%29.CNhs12859.12760-136B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep2 (A2 T0)_CNhs12859_12760-136B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12760-136B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep2A2T0_CNhs12859_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12760-136B6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF079BIZ suprpSkin EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF079BIZ) 0 1202 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF079BIZ)\ parent encTfChipPk off\ shortLabel suprpSkin EP300\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF079BIZ\ wgEncodeReg4TfChip_ENCFF380WHM ENCSR000EGX Peak bigBed 5 K562 MAFK peaks 4 1203 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/e8698790-c4b1-4ec0-a50f-f535c8061969/ENCFF380WHM.bigBed\ labelFields none\ longLabel K562 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF380WHM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF478RBT ENCSR095GWE Peak bigBed 5 Stomach tissue male embryo 58 days and male embryo 76 days DNase peak 4 1203 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/01f85e7b-2c96-46fb-9391-86e78a067d41/ENCFF478RBT.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue male embryo 58 days and male embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR095GWE Peak\ track wgEncodeReg4Epigenetics_ENCFF478RBT\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward 0 1203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward 1 1203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF104UOC suprpSkin EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF104UOC) 0 1203 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF104UOC)\ parent encTfChipPk off\ shortLabel suprpSkin EP300 1\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF104UOC\ wgEncodeReg4TfChip_ENCFF530IEE ENCSR000EGX Signal bigWig K562 MAFK ENCSR000EGX signal 2 1204 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ac77aa1e-2965-4cf3-980a-f9765ff22b2e/ENCFF530IEE.bigWig\ color 254,75,173\ longLabel K562 MAFK ENCSR000EGX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGX Signal\ track wgEncodeReg4TfChip_ENCFF530IEE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF656SOX ENCSR095GWE Signal bigWig Stomach tissue male embryo 58 days and male embryo 76 days DNase signal 2 1204 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/05f3c7c3-fb83-4246-9824-0c9675ed8707/ENCFF656SOX.bigWig\ color 6,218,147\ longLabel Stomach tissue male embryo 58 days and male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR095GWE Signal\ track wgEncodeReg4Epigenetics_ENCFF656SOX\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_rev Saos-2W/AscorbicAcidBgp_00hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse 0 1204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_rev Saos-2W/AscorbicAcidBgp_00hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse 1 1204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr00min%2c%20biol_rep3%20%28A3%20T0%29.CNhs12952.12858-137D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr00min, biol_rep3 (A3 T0)_CNhs12952_12858-137D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12858-137D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr00minBiolRep3A3T0_CNhs12952_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12858-137D5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF266KJH suprpSkin EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF266KJH) 0 1204 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in suprapubic_skin from ENCODE 3 (ENCFF266KJH)\ parent encTfChipPk off\ shortLabel suprpSkin EP300 2\ subGroups cellType=suprapubic_skin factor=EP300\ track encTfChipPkENCFF266KJH\ wgEncodeReg4TfChip_ENCFF696URH ENCSR000EGY Peak bigBed 5 K562 EP300 peaks 4 1205 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/875274ac-84ac-466f-a097-6a05e32a3b45/ENCFF696URH.bigBed\ labelFields none\ longLabel K562 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF696URH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF013HLW ENCSR095QNB Peak bigBed 5 GM12878 ATAC peak 4 1205 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/3fab9d1f-09d5-4163-ab28-90426f4e3108/ENCFF013HLW.bigBed\ color 2,199,185\ longLabel GM12878 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR095QNB Peak\ track wgEncodeReg4Epigenetics_ENCFF013HLW\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward 0 1205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward 1 1205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF401DJJ sprpSkin POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF401DJJ) 0 1205 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF401DJJ)\ parent encTfChipPk off\ shortLabel sprpSkin POLR2A 1\ subGroups cellType=suprapubic_skin factor=POLR2A\ track encTfChipPkENCFF401DJJ\ wgEncodeReg4TfChip_ENCFF198BYC ENCSR000EGY Signal bigWig K562 EP300 ENCSR000EGY signal 2 1206 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/48533d63-e220-4bab-b4e2-6301bba6379e/ENCFF198BYC.bigWig\ color 254,75,173\ longLabel K562 EP300 ENCSR000EGY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGY Signal\ track wgEncodeReg4TfChip_ENCFF198BYC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF487LOB ENCSR095QNB Signal bigWig GM12878 ATAC signal 2 1206 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/4c49a77a-edb2-4766-8328-d44ebe7446eb/ENCFF487LOB.bigWig\ color 2,199,185\ longLabel GM12878 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR095QNB Signal\ track wgEncodeReg4Epigenetics_ENCFF487LOB\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse 0 1206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse 1 1206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep1%20%28A1%20T1%29.CNhs12381.12663-134I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep1 (A1 T1)_CNhs12381_12663-134I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12663-134I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep1A1T1_CNhs12381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12663-134I8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF480OTT sprpSkin POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF480OTT) 0 1206 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in suprapubic_skin from ENCODE 3 (ENCFF480OTT)\ parent encTfChipPk off\ shortLabel sprpSkin POLR2A 2\ subGroups cellType=suprapubic_skin factor=POLR2A\ track encTfChipPkENCFF480OTT\ wgEncodeReg4TfChip_ENCFF336XYS ENCSR000EGZ Peak bigBed 5 K562 MXI1 peaks 4 1207 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/af4a1902-4884-4a04-91d3-e14e5df8bcff/ENCFF336XYS.bigBed\ labelFields none\ longLabel K562 MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EGZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF336XYS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF386WPQ ENCSR095YMD Peak bigBed 5 Esophagus muscularis mucosa tissue female adult 53 years H3K27ac peak 4 1207 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/8d0a0edc-fb14-4146-9b20-4defce74b8c6/ENCFF386WPQ.bigBed\ color 181,145,0\ longLabel Esophagus muscularis mucosa tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR095YMD Peak\ track wgEncodeReg4Epigenetics_ENCFF386WPQ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward 0 1207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward 1 1207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF788RFY testis CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF788RFY) 0 1207 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF788RFY)\ parent encTfChipPk off\ shortLabel testis CTCF 1\ subGroups cellType=testis factor=CTCF\ track encTfChipPkENCFF788RFY\ wgEncodeReg4TfChip_ENCFF901UYM ENCSR000EHA Peak bigBed 5 K562 TBP peaks 4 1208 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/07/14/8fec917c-3fa5-4f95-bde3-5ee901a872ac/ENCFF901UYM.bigBed\ labelFields none\ longLabel K562 TBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF901UYM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF395YPE ENCSR095YMD Signal bigWig Esophagus muscularis mucosa tissue female adult 53 years H3K27ac signal 2 1208 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/a2fad307-d029-42bf-a293-41d9dd8e70e5/ENCFF395YPE.bigWig\ color 181,145,0\ longLabel Esophagus muscularis mucosa tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR095YMD Signal\ track wgEncodeReg4Epigenetics_ENCFF395YPE\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse 0 1208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse 1 1208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep2%20%28A2%20T1%29.CNhs12860.12761-136B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep2 (A2 T1)_CNhs12860_12761-136B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12761-136B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep2A2T1_CNhs12860_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12761-136B7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF644JKD testis CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF644JKD) 0 1208 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in testis from ENCODE 3 (ENCFF644JKD)\ parent encTfChipPk off\ shortLabel testis CTCF 2\ subGroups cellType=testis factor=CTCF\ track encTfChipPkENCFF644JKD\ wgEncodeReg4TfChip_ENCFF727KHF ENCSR000EHA Signal bigWig K562 TBP ENCSR000EHA signal 2 1209 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2017/07/14/5b79c2e6-e904-4276-a9af-93b24fe94d7c/ENCFF727KHF.bigWig\ color 254,75,173\ longLabel K562 TBP ENCSR000EHA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHA Signal\ track wgEncodeReg4TfChip_ENCFF727KHF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF465PPB ENCSR096BPX Peak bigBed 5 Esophagus squamous epithelium tissue female adult 51 years ATAC peak 4 1209 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/e5d37554-5faa-4f5f-8c32-82ad17d6adb7/ENCFF465PPB.bigBed\ color 2,199,185\ longLabel Esophagus squamous epithelium tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096BPX Peak\ track wgEncodeReg4Epigenetics_ENCFF465PPB\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward 0 1209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr15minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward 1 1209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF046VTZ testis EP300 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in testis from ENCODE 3 (ENCFF046VTZ) 0 1209 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in testis from ENCODE 3 (ENCFF046VTZ)\ parent encTfChipPk off\ shortLabel testis EP300\ subGroups cellType=testis factor=EP300\ track encTfChipPkENCFF046VTZ\ wgEncodeReg4TfChip_ENCFF661CCK ENCSR000EHB Peak bigBed 5 K562 TAL1 peaks 4 1210 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a07faedc-dda2-478c-af66-bfd605d42949/ENCFF661CCK.bigBed\ labelFields none\ longLabel K562 TAL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF661CCK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF784PPX ENCSR096BPX Signal bigWig Esophagus squamous epithelium tissue female adult 51 years ATAC signal 2 1210 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/f5fc80ed-6981-455e-8398-faac2a3537ad/ENCFF784PPX.bigWig\ color 2,199,185\ longLabel Esophagus squamous epithelium tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096BPX Signal\ track wgEncodeReg4Epigenetics_ENCFF784PPX\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_rev Saos-2W/AscorbicAcidBgp_00hr15minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse 0 1210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_rev Saos-2W/AscorbicAcidBgp_00hr15minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse 1 1210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr15min%2c%20biol_rep3%20%28A3%20T1%29.CNhs12877.12859-137D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr15min, biol_rep3 (A3 T1)_CNhs12877_12859-137D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12859-137D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr15minBiolRep3A3T1_CNhs12877_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12859-137D6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF535DHF testis POLR2A narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in testis from ENCODE 3 (ENCFF535DHF) 0 1210 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in testis from ENCODE 3 (ENCFF535DHF)\ parent encTfChipPk off\ shortLabel testis POLR2A\ subGroups cellType=testis factor=POLR2A\ track encTfChipPkENCFF535DHF\ wgEncodeReg4TfChip_ENCFF439GTA ENCSR000EHB Signal bigWig K562 TAL1 ENCSR000EHB signal 2 1211 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f25cfe59-c1a9-4a92-bfbd-424a59f5cd0d/ENCFF439GTA.bigWig\ color 254,75,173\ longLabel K562 TAL1 ENCSR000EHB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHB Signal\ track wgEncodeReg4TfChip_ENCFF439GTA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF500AUF ENCSR096EZX Peak bigBed 5 Kidney tissue female embryo 120 days H3K4me3 peak 4 1211 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2023/01/17/0cc93bfe-3fc3-43e7-b227-6f86231f07bb/ENCFF500AUF.bigBed\ color 255,0,0\ longLabel Kidney tissue female embryo 120 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096EZX Peak\ track wgEncodeReg4Epigenetics_ENCFF500AUF\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward 0 1211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward 1 1211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF728IYI thyroid CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF728IYI) 0 1211 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF728IYI)\ parent encTfChipPk off\ shortLabel thyroid CTCF 1\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF728IYI\ wgEncodeReg4TfChip_ENCFF290EKB ENCSR000EHC Peak bigBed 5 K562 GTF2F1 peaks 4 1212 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1b7df531-f9af-4b26-81e3-391caaab72d7/ENCFF290EKB.bigBed\ labelFields none\ longLabel K562 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF290EKB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF486AVO ENCSR096EZX Signal bigWig Kidney tissue female embryo 120 days H3K4me3 signal 2 1212 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2017/03/22/dd02279d-7144-4f4f-99de-732199635d13/ENCFF486AVO.bigWig\ color 255,0,0\ longLabel Kidney tissue female embryo 120 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096EZX Signal\ track wgEncodeReg4Epigenetics_ENCFF486AVO\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse 0 1212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse 1 1212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep1%20%28A1%20T2%29.CNhs12382.12664-134I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep1 (A1 T2)_CNhs12382_12664-134I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12664-134I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep1A1T2_CNhs12382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12664-134I9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF026ZWL thyroid CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF026ZWL) 0 1212 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF026ZWL)\ parent encTfChipPk off\ shortLabel thyroid CTCF 2\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF026ZWL\ wgEncodeReg4TfChip_ENCFF352YOO ENCSR000EHC Signal bigWig K562 GTF2F1 ENCSR000EHC signal 2 1213 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/83d5130e-0fb1-453f-a70a-a43858a716fd/ENCFF352YOO.bigWig\ color 254,75,173\ longLabel K562 GTF2F1 ENCSR000EHC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHC Signal\ track wgEncodeReg4TfChip_ENCFF352YOO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF355KKM ENCSR096HVF Peak bigBed 5 K562 treated with 10 nM Bortezomib for 48 hours ATAC peak 4 1213 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/c4f438e6-2135-4593-a901-b89029134659/ENCFF355KKM.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Bortezomib for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096HVF Peak\ track wgEncodeReg4Epigenetics_ENCFF355KKM\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward 0 1213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward 1 1213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF989JUA thyroid CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF989JUA) 0 1213 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in thyroid_gland from ENCODE 3 (ENCFF989JUA)\ parent encTfChipPk off\ shortLabel thyroid CTCF 3\ subGroups cellType=thyroid_gland factor=CTCF\ track encTfChipPkENCFF989JUA\ wgEncodeReg4TfChip_ENCFF857WME ENCSR000EHD Peak bigBed 5 K562 CHD2 peaks 4 1214 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/9408daf5-6319-4282-b5d8-60889c490fcd/ENCFF857WME.bigBed\ labelFields none\ longLabel K562 CHD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF857WME\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF765UED ENCSR096HVF Signal bigWig K562 treated with 10 nM Bortezomib for 48 hours ATAC signal 2 1214 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/a8b36551-3b59-4ca2-9ce2-2051a31f6be5/ENCFF765UED.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Bortezomib for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096HVF Signal\ track wgEncodeReg4Epigenetics_ENCFF765UED\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse 0 1214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse 1 1214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep2%20%28A2%20T2%29.CNhs12861.12762-136B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep2 (A2 T2)_CNhs12861_12762-136B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12762-136B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep2A2T2_CNhs12861_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12762-136B8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF710ZQC thyroid POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF710ZQC) 0 1214 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF710ZQC)\ parent encTfChipPk off\ shortLabel thyroid POLR2A 1\ subGroups cellType=thyroid_gland factor=POLR2A\ track encTfChipPkENCFF710ZQC\ wgEncodeReg4TfChip_ENCFF032HVZ ENCSR000EHD Signal bigWig K562 CHD2 ENCSR000EHD signal 2 1215 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f35a6da0-de72-4fff-85df-3c6c563b12ff/ENCFF032HVZ.bigWig\ color 254,75,173\ longLabel K562 CHD2 ENCSR000EHD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHD Signal\ track wgEncodeReg4TfChip_ENCFF032HVZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF630WCJ ENCSR096VEO Peak bigBed 5 HG03135 ATAC peak 4 1215 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/e49c6e1a-df4f-40a2-930a-27748bfdbefd/ENCFF630WCJ.bigBed\ color 2,199,185\ longLabel HG03135 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096VEO Peak\ track wgEncodeReg4Epigenetics_ENCFF630WCJ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward 0 1215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward 1 1215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF445NPR thyroid POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF445NPR) 0 1215 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in thyroid_gland from ENCODE 3 (ENCFF445NPR)\ parent encTfChipPk off\ shortLabel thyroid POLR2A 2\ subGroups cellType=thyroid_gland factor=POLR2A\ track encTfChipPkENCFF445NPR\ wgEncodeReg4TfChip_ENCFF189VBN ENCSR000EHE Peak bigBed 5 K562 CEBPB peaks 4 1216 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/151a7ce7-c55d-42d6-9ee3-1fd6476b7614/ENCFF189VBN.bigBed\ labelFields none\ longLabel K562 CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF189VBN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF293YLU ENCSR096VEO Signal bigWig HG03135 ATAC signal 2 1216 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/14a20567-c11a-4532-b354-52c1cac606af/ENCFF293YLU.bigWig\ color 2,199,185\ longLabel HG03135 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR096VEO Signal\ track wgEncodeReg4Epigenetics_ENCFF293YLU\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_rev Saos-2W/AscorbicAcidBgp_00hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse 0 1216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_rev Saos-2W/AscorbicAcidBgp_00hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse 1 1216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr30min%2c%20biol_rep3%20%28A3%20T2%29.CNhs12954.12860-137D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr30min, biol_rep3 (A3 T2)_CNhs12954_12860-137D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12860-137D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr30minBiolRep3A3T2_CNhs12954_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12860-137D7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF960TOX tibialArtery CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_artery from ENCODE 3 (ENCFF960TOX) 0 1216 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_artery from ENCODE 3 (ENCFF960TOX)\ parent encTfChipPk off\ shortLabel tibialArtery CTCF\ subGroups cellType=tibial_artery factor=CTCF\ track encTfChipPkENCFF960TOX\ wgEncodeReg4TfChip_ENCFF454KRI ENCSR000EHE Signal bigWig K562 CEBPB ENCSR000EHE signal 2 1217 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/5b5f0c1a-b89a-4111-98a8-ed37edf151da/ENCFF454KRI.bigWig\ color 254,75,173\ longLabel K562 CEBPB ENCSR000EHE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHE Signal\ track wgEncodeReg4TfChip_ENCFF454KRI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF796KHF ENCSR097BWW Peak bigBed 5 Left kidney tissue female embryo 59 days and male embryo 91 days DNase peak 4 1217 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/435c4941-ad6d-4dea-acfb-8e64899ad530/ENCFF796KHF.bigBed\ color 6,218,147\ labelFields none\ longLabel Left kidney tissue female embryo 59 days and male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR097BWW Peak\ track wgEncodeReg4Epigenetics_ENCFF796KHF\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward 0 1217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward 1 1217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF237VLQ tbialNerve CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF237VLQ) 0 1217 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF237VLQ)\ parent encTfChipPk off\ shortLabel tbialNerve CTCF 1\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF237VLQ\ wgEncodeReg4TfChip_ENCFF643HGX ENCSR000EHF Peak bigBed 5 K562 POLR2AphosphoS2 peaks 4 1218 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7576aa0c-5ecf-4c0c-a536-c77e5c2b4d1f/ENCFF643HGX.bigBed\ labelFields none\ longLabel K562 POLR2AphosphoS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF643HGX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF887RAR ENCSR097BWW Signal bigWig Left kidney tissue female embryo 59 days and male embryo 91 days DNase signal 2 1218 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/952811e3-3c07-441e-80a8-8a048b6c96dd/ENCFF887RAR.bigWig\ color 6,218,147\ longLabel Left kidney tissue female embryo 59 days and male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR097BWW Signal\ track wgEncodeReg4Epigenetics_ENCFF887RAR\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse 0 1218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse 1 1218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep1%20%28A1%20T3%29.CNhs12383.12665-135A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep1 (A1 T3)_CNhs12383_12665-135A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12665-135A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep1A1T3_CNhs12383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12665-135A1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF611MLV tbialNerve CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF611MLV) 0 1218 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF611MLV)\ parent encTfChipPk off\ shortLabel tbialNerve CTCF 2\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF611MLV\ wgEncodeReg4TfChip_ENCFF711PAO ENCSR000EHF Signal bigWig K562 POLR2AphosphoS2 ENCSR000EHF signal 2 1219 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/36c036e6-e775-4005-aa5f-b654e8e696dd/ENCFF711PAO.bigWig\ color 254,75,173\ longLabel K562 POLR2AphosphoS2 ENCSR000EHF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHF Signal\ track wgEncodeReg4TfChip_ENCFF711PAO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF971FXU ENCSR097PJQ Peak bigBed 5 Chorionic villus tissue male embryo 16 weeks H3K4me3 peak 4 1219 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/4ce018ce-fc10-4cab-a650-570f570cb970/ENCFF971FXU.bigBed\ color 255,0,0\ longLabel Chorionic villus tissue male embryo 16 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR097PJQ Peak\ track wgEncodeReg4Epigenetics_ENCFF971FXU\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward 0 1219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward 1 1219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF691IPU tibialNerve CTCF narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF691IPU) 0 1219 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in tibial_nerve from ENCODE 3 (ENCFF691IPU)\ parent encTfChipPk off\ shortLabel tibialNerve CTCF\ subGroups cellType=tibial_nerve factor=CTCF\ track encTfChipPkENCFF691IPU\ wgEncodeReg4TfChip_ENCFF495XTL ENCSR000EHG Peak bigBed 5 K562 USF2 peaks 4 1220 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/381ba8e3-a0a5-4ad8-b718-9951ff0c9953/ENCFF495XTL.bigBed\ labelFields none\ longLabel K562 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF495XTL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF015MOG ENCSR097PJQ Signal bigWig Chorionic villus tissue male embryo 16 weeks H3K4me3 signal 2 1220 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5d19f59b-ac7a-4010-91d0-280aff389388/ENCFF015MOG.bigWig\ color 255,0,0\ longLabel Chorionic villus tissue male embryo 16 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR097PJQ Signal\ track wgEncodeReg4Epigenetics_ENCFF015MOG\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse 0 1220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse 1 1220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep2%20%28A2%20T3%29.CNhs12862.12763-136B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep2 (A2 T3)_CNhs12862_12763-136B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12763-136B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep2A2T3_CNhs12862_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12763-136B9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF848EEE tbialNerv EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF848EEE) 0 1220 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF848EEE)\ parent encTfChipPk off\ shortLabel tbialNerv EP300 1\ subGroups cellType=tibial_nerve factor=EP300\ track encTfChipPkENCFF848EEE\ wgEncodeReg4TfChip_ENCFF080NEA ENCSR000EHG Signal bigWig K562 USF2 ENCSR000EHG signal 2 1221 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/dac2717d-3a9f-451e-ab70-b4c487ccb378/ENCFF080NEA.bigWig\ color 254,75,173\ longLabel K562 USF2 ENCSR000EHG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHG Signal\ track wgEncodeReg4TfChip_ENCFF080NEA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF512UZQ ENCSR097WJR Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 1221 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3f84826d-3795-436a-914d-ef1cd913ec06/ENCFF512UZQ.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR097WJR Peak\ track wgEncodeReg4Epigenetics_ENCFF512UZQ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward 0 1221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_fwd Saos-2W/AscorbicAcidBgp_00hr45minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward 1 1221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF049JNK tbialNerv EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF049JNK) 0 1221 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in tibial_nerve from ENCODE 3 (ENCFF049JNK)\ parent encTfChipPk off\ shortLabel tbialNerv EP300 2\ subGroups cellType=tibial_nerve factor=EP300\ track encTfChipPkENCFF049JNK\ wgEncodeReg4TfChip_ENCFF773FOM ENCSR000EHH Peak bigBed 5 K562 NRF1 peaks 4 1222 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/8575152d-5bc6-4ff9-9421-d4716200104f/ENCFF773FOM.bigBed\ labelFields none\ longLabel K562 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF773FOM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF691SRQ ENCSR097WJR Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 1222 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c4a0ec53-0362-4373-a725-08d8ca4bc0be/ENCFF691SRQ.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR097WJR Signal\ track wgEncodeReg4Epigenetics_ENCFF691SRQ\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_rev Saos-2W/AscorbicAcidBgp_00hr45minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse 0 1222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_rev Saos-2W/AscorbicAcidBgp_00hr45minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse 1 1222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2000hr45min%2c%20biol_rep3%20%28A3%20T3%29.CNhs12878.12861-137D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 00hr45min, biol_rep3 (A3 T3)_CNhs12878_12861-137D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12861-137D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification00hr45minBiolRep3A3T3_CNhs12878_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12861-137D8\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF355SDI tblNerve POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF355SDI) 0 1222 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF355SDI)\ parent encTfChipPk off\ shortLabel tblNerve POLR2A 1\ subGroups cellType=tibial_nerve factor=POLR2A\ track encTfChipPkENCFF355SDI\ wgEncodeReg4TfChip_ENCFF318QRJ ENCSR000EHH Signal bigWig K562 NRF1 ENCSR000EHH signal 2 1223 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/4e00513a-2847-4177-b7cb-992597c7ccab/ENCFF318QRJ.bigWig\ color 254,75,173\ longLabel K562 NRF1 ENCSR000EHH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHH Signal\ track wgEncodeReg4TfChip_ENCFF318QRJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF575WCK ENCSR098ALO Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 1223 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/14b42fbf-8a7a-47e5-8389-4a391f492e49/ENCFF575WCK.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098ALO Peak\ track wgEncodeReg4Epigenetics_ENCFF575WCK\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward 0 1223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward 1 1223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF663DIG tblNerve POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF663DIG) 0 1223 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in tibial_nerve from ENCODE 3 (ENCFF663DIG)\ parent encTfChipPk off\ shortLabel tblNerve POLR2A 2\ subGroups cellType=tibial_nerve factor=POLR2A\ track encTfChipPkENCFF663DIG\ wgEncodeReg4TfChip_ENCFF419GHN ENCSR000EHL Peak bigBed 5 K562 POLR2A peaks 4 1224 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/ba37a539-36b5-402f-b841-3a6311aab4f1/ENCFF419GHN.bigBed\ labelFields none\ longLabel K562 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF419GHN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF134OLO ENCSR098ALO Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 1224 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c69347dc-58aa-47df-a710-c293b5a985a0/ENCFF134OLO.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098ALO Signal\ track wgEncodeReg4Epigenetics_ENCFF134OLO\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse 0 1224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse 1 1224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep1%20%28A1%20T4%29.CNhs12384.12666-135A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep1 (A1 T4)_CNhs12384_12666-135A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12666-135A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep1A1T4_CNhs12384_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12666-135A2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF907KEJ trnsvColon CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF907KEJ) 0 1224 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF907KEJ)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 1\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF907KEJ\ wgEncodeReg4TfChip_ENCFF937ZPS ENCSR000EHL Signal bigWig K562 POLR2A ENCSR000EHL signal 2 1225 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1d26d5d9-f56e-48d8-9ea8-eb31fae4f2cd/ENCFF937ZPS.bigWig\ color 254,75,173\ longLabel K562 POLR2A ENCSR000EHL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHL Signal\ track wgEncodeReg4TfChip_ENCFF937ZPS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF442TUL ENCSR098CPV Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 1225 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/698cf8d5-3962-4d0b-a141-004353f73cf1/ENCFF442TUL.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098CPV Peak\ track wgEncodeReg4Epigenetics_ENCFF442TUL\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward 0 1225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward 1 1225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF607VAP trnsvColon CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF607VAP) 0 1225 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF607VAP)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 2\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF607VAP\ wgEncodeReg4TfChip_ENCFF006QTQ ENCSR000EHN Peak bigBed 5 K562 SMARCB1 peaks 4 1226 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7b675417-2b03-497f-8223-692a84da22cc/ENCFF006QTQ.bigBed\ labelFields none\ longLabel K562 SMARCB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF006QTQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF442UOG ENCSR098CPV Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal 2 1226 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/ec8716db-666c-4a14-af12-18cf127f6185/ENCFF442UOG.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098CPV Signal\ track wgEncodeReg4Epigenetics_ENCFF442UOG\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse 0 1226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse 1 1226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep2%20%28A2%20T4%29.CNhs12863.12764-136C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep2 (A2 T4)_CNhs12863_12764-136C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12764-136C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep2A2T4_CNhs12863_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12764-136C1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF538QPY trnsvColon CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF538QPY) 0 1226 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF538QPY)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 3\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF538QPY\ wgEncodeReg4TfChip_ENCFF424PDB ENCSR000EHN Signal bigWig K562 SMARCB1 ENCSR000EHN signal 2 1227 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8a1e4162-0009-4451-a023-22e207bb267f/ENCFF424PDB.bigWig\ color 254,75,173\ longLabel K562 SMARCB1 ENCSR000EHN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHN Signal\ track wgEncodeReg4TfChip_ENCFF424PDB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF659QPY ENCSR098ISE Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 1227 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/d75a5163-22aa-47ca-8fdf-648f076f8282/ENCFF659QPY.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098ISE Peak\ track wgEncodeReg4Epigenetics_ENCFF659QPY\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward 0 1227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward 1 1227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF693TBO trnsvColon CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF693TBO) 0 1227 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in transverse_colon from ENCODE 3 (ENCFF693TBO)\ parent encTfChipPk off\ shortLabel trnsvColon CTCF 4\ subGroups cellType=transverse_colon factor=CTCF\ track encTfChipPkENCFF693TBO\ wgEncodeReg4TfChip_ENCFF357NOJ ENCSR000EHO Peak bigBed 5 K562 SMARCA4 peaks 4 1228 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/2a9a7ccf-bf15-42dd-8f27-507e7e97b65c/ENCFF357NOJ.bigBed\ labelFields none\ longLabel K562 SMARCA4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF357NOJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF859RCJ ENCSR098ISE Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 1228 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/a358cb05-aa05-4242-8f4a-15ec0643d6ee/ENCFF859RCJ.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098ISE Signal\ track wgEncodeReg4Epigenetics_ENCFF859RCJ\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_rev Saos-2W/AscorbicAcidBgp_01hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse 0 1228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_rev Saos-2W/AscorbicAcidBgp_01hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse 1 1228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr00min%2c%20biol_rep3%20%28A3%20T4%29.CNhs12955.12862-137D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr00min, biol_rep3 (A3 T4)_CNhs12955_12862-137D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12862-137D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr00minBiolRep3A3T4_CNhs12955_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12862-137D9\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF244FQD transvCln EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF244FQD) 0 1228 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF244FQD)\ parent encTfChipPk off\ shortLabel transvCln EP300 1\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF244FQD\ wgEncodeReg4TfChip_ENCFF280PTW ENCSR000EHO Signal bigWig K562 SMARCA4 ENCSR000EHO signal 2 1229 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/fe3f8d0a-38e7-43bf-8f0a-29737414347d/ENCFF280PTW.bigWig\ color 254,75,173\ longLabel K562 SMARCA4 ENCSR000EHO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHO Signal\ track wgEncodeReg4TfChip_ENCFF280PTW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF038QHN ENCSR098OLN Peak bigBed 5 Gastrocnemius medialis tissue female adult 51 years H3K4me3 peak 4 1229 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/e908d60e-401a-42e0-9ec0-f2a44a597ef9/ENCFF038QHN.bigBed\ color 255,0,0\ longLabel Gastrocnemius medialis tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098OLN Peak\ track wgEncodeReg4Epigenetics_ENCFF038QHN\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward 0 1229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward 1 1229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF079CRY transvCln EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF079CRY) 0 1229 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF079CRY)\ parent encTfChipPk off\ shortLabel transvCln EP300 2\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF079CRY\ wgEncodeReg4TfChip_ENCFF142PRP ENCSR000EHR Peak bigBed 5 NB4 MYC peaks 4 1230 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/62b643e1-f359-492a-b66e-a519c853b178/ENCFF142PRP.bigBed\ labelFields none\ longLabel NB4 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF142PRP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF707BCP ENCSR098OLN Signal bigWig Gastrocnemius medialis tissue female adult 51 years H3K4me3 signal 2 1230 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/01de9c12-259f-47c5-8c76-36461ac558bd/ENCFF707BCP.bigWig\ color 255,0,0\ longLabel Gastrocnemius medialis tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098OLN Signal\ track wgEncodeReg4Epigenetics_ENCFF707BCP\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse 0 1230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse 1 1230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep1%20%28A1%20T5%29.CNhs12386.12667-135A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep1 (A1 T5)_CNhs12386_12667-135A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12667-135A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep1A1T5_CNhs12386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12667-135A3\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF580NSJ transvCln EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF580NSJ) 0 1230 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in transverse_colon from ENCODE 3 (ENCFF580NSJ)\ parent encTfChipPk off\ shortLabel transvCln EP300 3\ subGroups cellType=transverse_colon factor=EP300\ track encTfChipPkENCFF580NSJ\ wgEncodeReg4TfChip_ENCFF656BVJ ENCSR000EHR Signal bigWig NB4 MYC ENCSR000EHR signal 2 1231 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d2ce8fd6-7d5f-4e4c-a99c-16ff973fa55e/ENCFF656BVJ.bigWig\ color 2,199,185\ longLabel NB4 MYC ENCSR000EHR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHR Signal\ track wgEncodeReg4TfChip_ENCFF656BVJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF010FVW ENCSR098PTC Peak bigBed 5 Hematopoietic multipotent progenitor cell DNase peak 4 1231 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/37364b23-302b-4ed5-9e2f-3017ece99291/ENCFF010FVW.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098PTC Peak\ track wgEncodeReg4Epigenetics_ENCFF010FVW\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward 0 1231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward 1 1231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF185LTG trnsvCln POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF185LTG) 0 1231 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF185LTG)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 1\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF185LTG\ wgEncodeReg4TfChip_ENCFF966MWB ENCSR000EHS Peak bigBed 5 NB4 MAX peaks 4 1232 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/20ff254c-88cc-44c5-92dd-c8abc9435d47/ENCFF966MWB.bigBed\ labelFields none\ longLabel NB4 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF966MWB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF648LHT ENCSR098PTC Signal bigWig Hematopoietic multipotent progenitor cell DNase signal 2 1232 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/27ced81a-82ce-4998-8f14-004195eb958f/ENCFF648LHT.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR098PTC Signal\ track wgEncodeReg4Epigenetics_ENCFF648LHT\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse 0 1232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse 1 1232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep2%20%28A2%20T5%29.CNhs12864.12765-136C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep2 (A2 T5)_CNhs12864_12765-136C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12765-136C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep2A2T5_CNhs12864_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12765-136C2\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF211VGU trnsvCln POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF211VGU) 0 1232 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF211VGU)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 2\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF211VGU\ wgEncodeReg4TfChip_ENCFF308UJV ENCSR000EHS Signal bigWig NB4 MAX ENCSR000EHS signal 2 1233 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/6646853a-62e9-4c8e-968d-3cafdfa9c4e9/ENCFF308UJV.bigWig\ color 2,199,185\ longLabel NB4 MAX ENCSR000EHS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHS Signal\ track wgEncodeReg4TfChip_ENCFF308UJV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF854NVA ENCSR100CMZ Peak bigBed 5 Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 1233 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/339e0637-0e1e-4e5e-990a-fcdf0b35d063/ENCFF854NVA.bigBed\ color 181,145,0\ longLabel Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR100CMZ Peak\ track wgEncodeReg4Epigenetics_ENCFF854NVA\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward 0 1233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr20minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward 1 1233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF228NVN trnsvCln POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF228NVN) 0 1233 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF228NVN)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 3\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF228NVN\ wgEncodeReg4TfChip_ENCFF829RWA ENCSR000EHV Peak bigBed 5 SK-N-SH EP300 peaks 4 1234 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3df49d7b-38ea-4b60-9831-a674750b3ad9/ENCFF829RWA.bigBed\ labelFields none\ longLabel SK-N-SH EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF829RWA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF692UGR ENCSR100CMZ Signal bigWig Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 1234 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/14617593-15aa-4843-9a53-51e4d486da73/ENCFF692UGR.bigWig\ color 181,145,0\ longLabel Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR100CMZ Signal\ track wgEncodeReg4Epigenetics_ENCFF692UGR\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_rev Saos-2W/AscorbicAcidBgp_01hr20minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse 0 1234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_rev Saos-2W/AscorbicAcidBgp_01hr20minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse 1 1234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr20min%2c%20biol_rep3%20%28A3%20T5%29.CNhs12879.12863-137E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr20min, biol_rep3 (A3 T5)_CNhs12879_12863-137E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12863-137E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr20minBiolRep3A3T5_CNhs12879_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12863-137E1\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF028RZP trnsvCln POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF028RZP) 0 1234 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in transverse_colon from ENCODE 3 (ENCFF028RZP)\ parent encTfChipPk off\ shortLabel trnsvCln POLR2A 4\ subGroups cellType=transverse_colon factor=POLR2A\ track encTfChipPkENCFF028RZP\ wgEncodeReg4TfChip_ENCFF626ANA ENCSR000EHV Signal bigWig SK-N-SH EP300 ENCSR000EHV signal 2 1235 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7b53ca88-0d7a-48bf-9cfe-29d08ac56ed8/ENCFF626ANA.bigWig\ color 155,155,18\ longLabel SK-N-SH EP300 ENCSR000EHV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHV Signal\ track wgEncodeReg4TfChip_ENCFF626ANA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF390VYV ENCSR100OSB Peak bigBed 5 Activated CD4 positive, naive alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak 4 1235 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/a6946fbc-0293-4eeb-9ce9-8dfd3ca256f4/ENCFF390VYV.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR100OSB Peak\ track wgEncodeReg4Epigenetics_ENCFF390VYV\ type bigBed 5\ visibility squish\ encTfChipPkENCFF869YGK lungUpLobe CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF869YGK) 0 1235 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF869YGK)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 1\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF869YGK\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward 0 1235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward 1 1235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF791WFB ENCSR000EHW Peak bigBed 5 SK-N-SH SMC3 peaks 4 1236 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/7317005e-bf39-4ed5-b6d7-31b322661b63/ENCFF791WFB.bigBed\ labelFields none\ longLabel SK-N-SH SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF791WFB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF238HIW ENCSR100OSB Signal bigWig Activated CD4 positive, naive alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal 2 1236 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/74ce8e3d-c03b-4f11-a557-3ae4a474d656/ENCFF238HIW.bigWig\ color 6,218,147\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR100OSB Signal\ track wgEncodeReg4Epigenetics_ENCFF238HIW\ type bigWig\ visibility full\ encTfChipPkENCFF749CMN lungUpLobe CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF749CMN) 0 1236 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF749CMN)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 2\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF749CMN\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse 0 1236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse 1 1236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep1%20%28A1%20T6%29.CNhs12387.12668-135A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep1 (A1 T6)_CNhs12387_12668-135A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12668-135A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep1A1T6_CNhs12387_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12668-135A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF991ZZB ENCSR000EHW Signal bigWig SK-N-SH SMC3 ENCSR000EHW signal 2 1237 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/90c77522-e094-4c7a-99ef-3a64cdf8d5f4/ENCFF991ZZB.bigWig\ color 155,155,18\ longLabel SK-N-SH SMC3 ENCSR000EHW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHW Signal\ track wgEncodeReg4TfChip_ENCFF991ZZB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF044FCM ENCSR100OZR Peak bigBed 5 Kidney tissue male adult 50 years H3K4me3 peak 4 1237 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/15421022-d919-4d20-869d-280f3d82fdc9/ENCFF044FCM.bigBed\ color 255,0,0\ longLabel Kidney tissue male adult 50 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR100OZR Peak\ track wgEncodeReg4Epigenetics_ENCFF044FCM\ type bigBed 5\ visibility squish\ encTfChipPkENCFF254NYT lungUpLobe CTCF 3 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF254NYT) 0 1237 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF254NYT)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 3\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF254NYT\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward 0 1237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward 1 1237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF747MAS ENCSR000EHX Peak bigBed 5 SK-N-SH RAD21 peaks 4 1238 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/1b4474c8-08ee-454b-abe5-7d3a7b73b415/ENCFF747MAS.bigBed\ labelFields none\ longLabel SK-N-SH RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF747MAS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF929KNV ENCSR100OZR Signal bigWig Kidney tissue male adult 50 years H3K4me3 signal 2 1238 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3d8769bc-f407-41fd-9921-f9af0596c748/ENCFF929KNV.bigWig\ color 255,0,0\ longLabel Kidney tissue male adult 50 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR100OZR Signal\ track wgEncodeReg4Epigenetics_ENCFF929KNV\ type bigWig\ visibility full\ encTfChipPkENCFF716XFO lungUpLobe CTCF 4 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF716XFO) 0 1238 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in upper_lobe_of_left_lung from ENCODE 3 (ENCFF716XFO)\ parent encTfChipPk off\ shortLabel lungUpLobe CTCF 4\ subGroups cellType=upper_lobe_of_left_lung factor=CTCF\ track encTfChipPkENCFF716XFO\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse 0 1238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse 1 1238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep2%20%28A2%20T6%29.CNhs12866.12766-136C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep2 (A2 T6)_CNhs12866_12766-136C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12766-136C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep2A2T6_CNhs12866_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12766-136C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF914LBH ENCSR000EHX Signal bigWig SK-N-SH RAD21 ENCSR000EHX signal 2 1239 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/2b48cd04-848e-47c1-b0bb-9c52a9d5640f/ENCFF914LBH.bigWig\ color 155,155,18\ longLabel SK-N-SH RAD21 ENCSR000EHX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHX Signal\ track wgEncodeReg4TfChip_ENCFF914LBH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF593OEC ENCSR101HFF Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 81 years DNase peak 4 1239 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/f2338655-568c-488a-bebd-4e60a51d7ba3/ENCFF593OEC.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 81 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR101HFF Peak\ track wgEncodeReg4Epigenetics_ENCFF593OEC\ type bigBed 5\ visibility squish\ encTfChipPkENCFF348MWL lungUpLbe EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF348MWL) 0 1239 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF348MWL)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 1\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF348MWL\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward 0 1239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_fwd Saos-2W/AscorbicAcidBgp_01hr40minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward 1 1239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF755HLO ENCSR000EHY Peak bigBed 5 SK-N-SH RFX5 peaks 4 1240 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/6c193ec2-c41b-45fd-b0b1-f8e3229bdda5/ENCFF755HLO.bigBed\ labelFields none\ longLabel SK-N-SH RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF755HLO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF502BRQ ENCSR101HFF Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 81 years DNase signal 2 1240 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/54765653-08fe-4f8a-af6f-57346929d2d7/ENCFF502BRQ.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 81 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR101HFF Signal\ track wgEncodeReg4Epigenetics_ENCFF502BRQ\ type bigWig\ visibility full\ encTfChipPkENCFF676WYA lungUpLbe EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF676WYA) 0 1240 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF676WYA)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 2\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF676WYA\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_rev Saos-2W/AscorbicAcidBgp_01hr40minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse 0 1240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_rev Saos-2W/AscorbicAcidBgp_01hr40minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse 1 1240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2001hr40min%2c%20biol_rep3%20%28A3%20T6%29.CNhs12880.12864-137E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 01hr40min, biol_rep3 (A3 T6)_CNhs12880_12864-137E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12864-137E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification01hr40minBiolRep3A3T6_CNhs12880_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12864-137E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF607XDL ENCSR000EHY Signal bigWig SK-N-SH RFX5 ENCSR000EHY signal 2 1241 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/304c551b-01b1-4b8b-895b-9a860202f2a6/ENCFF607XDL.bigWig\ color 155,155,18\ longLabel SK-N-SH RFX5 ENCSR000EHY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHY Signal\ track wgEncodeReg4TfChip_ENCFF607XDL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF954IFZ ENCSR101QXF Peak bigBed 5 Suprapubic skin tissue female adult 53 years DNase peak 4 1241 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/1e435fa9-d748-4ab7-97ca-a314b24d8c84/ENCFF954IFZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Suprapubic skin tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR101QXF Peak\ track wgEncodeReg4Epigenetics_ENCFF954IFZ\ type bigBed 5\ visibility squish\ encTfChipPkENCFF833NHM lungUpLbe EP300 3 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF833NHM) 0 1241 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF833NHM)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 3\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF833NHM\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward 0 1241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward 1 1241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF820YTU ENCSR000EHZ Peak bigBed 5 SK-N-SH NRF1 peaks 4 1242 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/1774b54c-8a12-4f07-8e91-5542782bca3b/ENCFF820YTU.bigBed\ labelFields none\ longLabel SK-N-SH NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF820YTU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF548VEV ENCSR101QXF Signal bigWig Suprapubic skin tissue female adult 53 years DNase signal 2 1242 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/2ce2ba7f-faf3-4212-bcb2-496cf0d72d4e/ENCFF548VEV.bigWig\ color 6,218,147\ longLabel Suprapubic skin tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR101QXF Signal\ track wgEncodeReg4Epigenetics_ENCFF548VEV\ type bigWig\ visibility full\ encTfChipPkENCFF567XKZ lungUpLbe EP300 4 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF567XKZ) 0 1242 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in upper_lobe_of_left_lung from ENCODE 3 (ENCFF567XKZ)\ parent encTfChipPk off\ shortLabel lungUpLbe EP300 4\ subGroups cellType=upper_lobe_of_left_lung factor=EP300\ track encTfChipPkENCFF567XKZ\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse 0 1242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse 1 1242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep1%20%28A1%20T7%29.CNhs12388.12669-135A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep1 (A1 T7)_CNhs12388_12669-135A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12669-135A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep1A1T7_CNhs12388_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12669-135A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF989ZNU ENCSR000EHZ Signal bigWig SK-N-SH NRF1 ENCSR000EHZ signal 2 1243 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7a274e67-8952-4334-b329-ab9341e09a38/ENCFF989ZNU.bigWig\ color 155,155,18\ longLabel SK-N-SH NRF1 ENCSR000EHZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EHZ Signal\ track wgEncodeReg4TfChip_ENCFF989ZNU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF951BKP ENCSR102RSU Peak bigBed 5 Tibial artery tissue male adult 37 years DNase peak 4 1243 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/c54e3b0e-8168-4ab7-bbcf-448867db6617/ENCFF951BKP.bigBed\ color 6,218,147\ labelFields none\ longLabel Tibial artery tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR102RSU Peak\ track wgEncodeReg4Epigenetics_ENCFF951BKP\ type bigBed 5\ visibility squish\ encTfChipPkENCFF665TLS lungUpLb POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF665TLS) 0 1243 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF665TLS)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 1\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF665TLS\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward 0 1243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward 1 1243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF746HVJ ENCSR000EIA Peak bigBed 5 SK-N-SH MXI1 peaks 4 1244 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/54fc05e2-3058-4577-b1c4-e340229e959d/ENCFF746HVJ.bigBed\ labelFields none\ longLabel SK-N-SH MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EIA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF746HVJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF013UBZ ENCSR102RSU Signal bigWig Tibial artery tissue male adult 37 years DNase signal 2 1244 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/ab74774d-6e92-4242-9508-d80454df0f45/ENCFF013UBZ.bigWig\ color 6,218,147\ longLabel Tibial artery tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR102RSU Signal\ track wgEncodeReg4Epigenetics_ENCFF013UBZ\ type bigWig\ visibility full\ encTfChipPkENCFF468AEV lungUpLb POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF468AEV) 0 1244 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF468AEV)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 2\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF468AEV\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse 0 1244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse 1 1244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep2%20%28A2%20T7%29.CNhs12867.12767-136C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep2 (A2 T7)_CNhs12867_12767-136C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12767-136C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep2A2T7_CNhs12867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12767-136C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF233NFA ENCSR000EIA Signal bigWig SK-N-SH MXI1 ENCSR000EIA signal 2 1245 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6483eff3-7672-4197-9edf-5f9377c1199c/ENCFF233NFA.bigWig\ color 155,155,18\ longLabel SK-N-SH MXI1 ENCSR000EIA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EIA Signal\ track wgEncodeReg4TfChip_ENCFF233NFA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF188CIA ENCSR102RXG Peak bigBed 5 T-cell female adult 33 years ATAC peak 4 1245 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/9ae70585-5dcf-42dc-bb31-1faacdbcae28/ENCFF188CIA.bigBed\ color 2,199,185\ longLabel T-cell female adult 33 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR102RXG Peak\ track wgEncodeReg4Epigenetics_ENCFF188CIA\ type bigBed 5\ visibility squish\ encTfChipPkENCFF626AFW lungUpLb POLR2A 3 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF626AFW) 0 1245 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF626AFW)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 3\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF626AFW\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward 0 1245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr00minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward 1 1245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF971JKN ENCSR000EIB Peak bigBed 5 SK-N-SH JUND peaks 4 1246 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/0a376cee-5112-4211-b959-f80de1f0263b/ENCFF971JKN.bigBed\ labelFields none\ longLabel SK-N-SH JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF971JKN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF845DQD ENCSR102RXG Signal bigWig T-cell female adult 33 years ATAC signal 2 1246 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/7f03814e-4f4e-4626-bc71-ba46d7db5083/ENCFF845DQD.bigWig\ color 2,199,185\ longLabel T-cell female adult 33 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR102RXG Signal\ track wgEncodeReg4Epigenetics_ENCFF845DQD\ type bigWig\ visibility full\ encTfChipPkENCFF834DID lungUpLb POLR2A 4 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF834DID) 0 1246 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in upper_lobe_of_left_lung from ENCODE 3 (ENCFF834DID)\ parent encTfChipPk off\ shortLabel lungUpLb POLR2A 4\ subGroups cellType=upper_lobe_of_left_lung factor=POLR2A\ track encTfChipPkENCFF834DID\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_rev Saos-2W/AscorbicAcidBgp_02hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse 0 1246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_rev Saos-2W/AscorbicAcidBgp_02hr00minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse 1 1246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr00min%2c%20biol_rep3%20%28A3%20T7%29.CNhs12881.12865-137E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr00min, biol_rep3 (A3 T7)_CNhs12881_12865-137E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12865-137E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr00minBiolRep3A3T7_CNhs12881_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12865-137E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF728HYA ENCSR000EIB Signal bigWig SK-N-SH JUND ENCSR000EIB signal 2 1247 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5ebeb2de-bece-42ec-b72e-893fa604902d/ENCFF728HYA.bigWig\ color 155,155,18\ longLabel SK-N-SH JUND ENCSR000EIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EIB Signal\ track wgEncodeReg4TfChip_ENCFF728HYA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF735WNA ENCSR103HMP Peak bigBed 5 Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 peak 4 1247 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7950998c-f9f8-4c1c-b367-3ae40cc5f6a5/ENCFF735WNA.bigBed\ color 255,0,0\ longLabel Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR103HMP Peak\ track wgEncodeReg4Epigenetics_ENCFF735WNA\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward 0 1247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward 1 1247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF866EIC uterus CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF866EIC) 0 1247 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF866EIC)\ parent encTfChipPk off\ shortLabel uterus CTCF 1\ subGroups cellType=uterus factor=CTCF\ track encTfChipPkENCFF866EIC\ wgEncodeReg4TfChip_ENCFF731NJX ENCSR000EIC Peak bigBed 5 SK-N-SH CTCF peaks 4 1248 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9273a8d4-fb13-48c5-b94a-d30f62676199/ENCFF731NJX.bigBed\ labelFields none\ longLabel SK-N-SH CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EIC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF731NJX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF191YWL ENCSR103HMP Signal bigWig Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 signal 2 1248 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7ca44b5c-b34d-43bb-aaef-11342e5b1104/ENCFF191YWL.bigWig\ color 255,0,0\ longLabel Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR103HMP Signal\ track wgEncodeReg4Epigenetics_ENCFF191YWL\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse 0 1248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse 1 1248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep1%20%28A1%20T8%29.CNhs12389.12670-135A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep1 (A1 T8)_CNhs12389_12670-135A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12670-135A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep1A1T8_CNhs12389_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12670-135A6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF179YWB uterus CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF179YWB) 0 1248 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in uterus from ENCODE 3 (ENCFF179YWB)\ parent encTfChipPk off\ shortLabel uterus CTCF 2\ subGroups cellType=uterus factor=CTCF\ track encTfChipPkENCFF179YWB\ wgEncodeReg4TfChip_ENCFF747ZZB ENCSR000EIC Signal bigWig SK-N-SH CTCF ENCSR000EIC signal 2 1249 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/804495d7-7c5f-4e25-b9ee-780f2900223c/ENCFF747ZZB.bigWig\ color 155,155,18\ longLabel SK-N-SH CTCF ENCSR000EIC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EIC Signal\ track wgEncodeReg4TfChip_ENCFF747ZZB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF594YDH ENCSR104QUE Peak bigBed 5 Activated gamma-delta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak 4 1249 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/e4e1e805-07ae-493f-a55f-f73c68408d18/ENCFF594YDH.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated gamma-delta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR104QUE Peak\ track wgEncodeReg4Epigenetics_ENCFF594YDH\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward 0 1249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward 1 1249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF236XBY uterus POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF236XBY) 0 1249 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF236XBY)\ parent encTfChipPk off\ shortLabel uterus POLR2A 1\ subGroups cellType=uterus factor=POLR2A\ track encTfChipPkENCFF236XBY\ wgEncodeReg4TfChip_ENCFF609SEN ENCSR000EUI Peak bigBed 5 GM08714 ZNF274 peaks 4 1250 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d3c9c49b-3ba8-4ef1-b065-afd03b6baa4b/ENCFF609SEN.bigBed\ labelFields none\ longLabel GM08714 ZNF274 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF609SEN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF671XRX ENCSR104QUE Signal bigWig Activated gamma-delta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 1250 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/4b4dd759-abb7-4991-b749-ea644ad1f06b/ENCFF671XRX.bigWig\ color 6,218,147\ longLabel Activated gamma-delta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR104QUE Signal\ track wgEncodeReg4Epigenetics_ENCFF671XRX\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse 0 1250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse 1 1250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep2%20%28A2%20T8%29.CNhs12868.12768-136C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep2 (A2 T8)_CNhs12868_12768-136C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12768-136C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep2A2T8_CNhs12868_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12768-136C5\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF198EUQ uterus POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF198EUQ) 0 1250 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in uterus from ENCODE 3 (ENCFF198EUQ)\ parent encTfChipPk off\ shortLabel uterus POLR2A 2\ subGroups cellType=uterus factor=POLR2A\ track encTfChipPkENCFF198EUQ\ wgEncodeReg4TfChip_ENCFF815QDW ENCSR000EUI Signal bigWig GM08714 ZNF274 ENCSR000EUI signal 2 1251 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/99138d18-ceca-47c8-be99-b8e9b0bb7c24/ENCFF815QDW.bigWig\ color 254,75,173\ longLabel GM08714 ZNF274 ENCSR000EUI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUI Signal\ track wgEncodeReg4TfChip_ENCFF815QDW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF513STR ENCSR105EMQ Peak bigBed 5 Peripheral blood mononuclear cell male adult 39 years H3K27ac peak 4 1251 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/18dbfc86-932b-4ff2-b34b-2c9d155b686d/ENCFF513STR.bigBed\ color 181,145,0\ longLabel Peripheral blood mononuclear cell male adult 39 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR105EMQ Peak\ track wgEncodeReg4Epigenetics_ENCFF513STR\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward 0 1251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_fwd Saos-2W/AscorbicAcidBgp_02hr30minBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward 1 1251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF579GUD vagina CTCF 1 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF579GUD) 0 1251 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF579GUD)\ parent encTfChipPk off\ shortLabel vagina CTCF 1\ subGroups cellType=vagina factor=CTCF\ track encTfChipPkENCFF579GUD\ wgEncodeReg4TfChip_ENCFF616FJX ENCSR000EUJ Peak bigBed 5 GM12878 IKZF1 peaks 4 1252 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6ae528d2-7111-4e2e-95bf-b237a0428ae3/ENCFF616FJX.bigBed\ labelFields none\ longLabel GM12878 IKZF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF616FJX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF646TTB ENCSR105EMQ Signal bigWig Peripheral blood mononuclear cell male adult 39 years H3K27ac signal 2 1252 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/90bd34ca-3897-41f4-a979-e61e27c83ffc/ENCFF646TTB.bigWig\ color 181,145,0\ longLabel Peripheral blood mononuclear cell male adult 39 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR105EMQ Signal\ track wgEncodeReg4Epigenetics_ENCFF646TTB\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_rev Saos-2W/AscorbicAcidBgp_02hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse 0 1252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_rev Saos-2W/AscorbicAcidBgp_02hr30minBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse 1 1252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2002hr30min%2c%20biol_rep3%20%28A3%20T8%29.CNhs12882.12866-137E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 02hr30min, biol_rep3 (A3 T8)_CNhs12882_12866-137E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12866-137E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification02hr30minBiolRep3A3T8_CNhs12882_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12866-137E4\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF508LRF vagina CTCF 2 narrowPeak Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF508LRF) 0 1252 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of CTCF in vagina from ENCODE 3 (ENCFF508LRF)\ parent encTfChipPk off\ shortLabel vagina CTCF 2\ subGroups cellType=vagina factor=CTCF\ track encTfChipPkENCFF508LRF\ wgEncodeReg4TfChip_ENCFF305RRT ENCSR000EUJ Signal bigWig GM12878 IKZF1 ENCSR000EUJ signal 2 1253 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/aa602c6b-143b-4ad3-936a-b7b54dbff4cf/ENCFF305RRT.bigWig\ color 254,75,173\ longLabel GM12878 IKZF1 ENCSR000EUJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUJ Signal\ track wgEncodeReg4TfChip_ENCFF305RRT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF474NNZ ENCSR105REF Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K4me3 peak 4 1253 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/41c7d439-5744-48cc-8b24-1f57ad0a2005/ENCFF474NNZ.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR105REF Peak\ track wgEncodeReg4Epigenetics_ENCFF474NNZ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward 0 1253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward 1 1253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF116VEG vagina EP300 1 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF116VEG) 0 1253 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF116VEG)\ parent encTfChipPk off\ shortLabel vagina EP300 1\ subGroups cellType=vagina factor=EP300\ track encTfChipPkENCFF116VEG\ wgEncodeReg4TfChip_ENCFF550ARE ENCSR000EUL Peak bigBed 5 GM12878 NR2C2 peaks 4 1254 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d5b05ef7-7de9-474e-879f-dbac8b03c1b8/ENCFF550ARE.bigBed\ labelFields none\ longLabel GM12878 NR2C2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF550ARE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF730FHG ENCSR105REF Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K4me3 signal 2 1254 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/b870f0be-457c-4d07-bf24-26573ae7de3b/ENCFF730FHG.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR105REF Signal\ track wgEncodeReg4Epigenetics_ENCFF730FHG\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse 0 1254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse 1 1254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep1%20%28A1%20T9%29.CNhs12390.12671-135A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep1 (A1 T9)_CNhs12390_12671-135A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12671-135A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep1A1T9_CNhs12390_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12671-135A7\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF242HMY vagina EP300 2 narrowPeak Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF242HMY) 0 1254 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of EP300 in vagina from ENCODE 3 (ENCFF242HMY)\ parent encTfChipPk off\ shortLabel vagina EP300 2\ subGroups cellType=vagina factor=EP300\ track encTfChipPkENCFF242HMY\ wgEncodeReg4TfChip_ENCFF835AYP ENCSR000EUL Signal bigWig GM12878 NR2C2 ENCSR000EUL signal 2 1255 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/b89deac0-62a1-4c5c-a6f4-8faf3a6c68ea/ENCFF835AYP.bigWig\ color 254,75,173\ longLabel GM12878 NR2C2 ENCSR000EUL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUL Signal\ track wgEncodeReg4TfChip_ENCFF835AYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF639LEO ENCSR105SCQ Peak bigBed 5 GM21360 ATAC peak 4 1255 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/4a2298e8-7311-4e87-a659-e42fd6593a05/ENCFF639LEO.bigBed\ color 2,199,185\ longLabel GM21360 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR105SCQ Peak\ track wgEncodeReg4Epigenetics_ENCFF639LEO\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward 0 1255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward 1 1255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF865QLX vagina POLR2A 1 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF865QLX) 0 1255 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF865QLX)\ parent encTfChipPk off\ shortLabel vagina POLR2A 1\ subGroups cellType=vagina factor=POLR2A\ track encTfChipPkENCFF865QLX\ wgEncodeReg4TfChip_ENCFF150EFU ENCSR000EUM Peak bigBed 5 GM12878 YY1 peaks 4 1256 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/0a4e6af5-c8de-4457-9774-f21f73eb11c7/ENCFF150EFU.bigBed\ labelFields none\ longLabel GM12878 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF150EFU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF200SFT ENCSR105SCQ Signal bigWig GM21360 ATAC signal 2 1256 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/4c9837dd-87ac-4339-b41e-e9f32ac727cf/ENCFF200SFT.bigWig\ color 2,199,185\ longLabel GM21360 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR105SCQ Signal\ track wgEncodeReg4Epigenetics_ENCFF200SFT\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse 0 1256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse 1 1256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep2%20%28A2%20T9%29.CNhs12869.12769-136C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep2 (A2 T9)_CNhs12869_12769-136C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12769-136C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep2A2T9_CNhs12869_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12769-136C6\ urlLabel FANTOM5 Details:\ encTfChipPkENCFF635MUK vagina POLR2A 2 narrowPeak Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF635MUK) 0 1256 0 0 0 127 127 127 0 0 0 regulation 1 longLabel Transcription Factor ChIP-seq Peaks of POLR2A in vagina from ENCODE 3 (ENCFF635MUK)\ parent encTfChipPk off\ shortLabel vagina POLR2A 2\ subGroups cellType=vagina factor=POLR2A\ track encTfChipPkENCFF635MUK\ wgEncodeReg4TfChip_ENCFF260SWT ENCSR000EUM Signal bigWig GM12878 YY1 ENCSR000EUM signal 2 1257 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/6cbf1c60-347b-4c56-8010-25a0c714a81e/ENCFF260SWT.bigWig\ color 254,75,173\ longLabel GM12878 YY1 ENCSR000EUM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUM Signal\ track wgEncodeReg4TfChip_ENCFF260SWT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF931YIL ENCSR106OKX Peak bigBed 5 Kidney tissue female embryo 120 days DNase peak 4 1257 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/664c059b-54f4-4bf7-b950-c3d03ecbe3e1/ENCFF931YIL.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue female embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR106OKX Peak\ track wgEncodeReg4Epigenetics_ENCFF931YIL\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_fwd Saos-2W/AscorbicAcidBgp_03hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward 0 1257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_fwd Saos-2W/AscorbicAcidBgp_03hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward 1 1257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF434LDY ENCSR000EUN Peak bigBed 5 H1 ZNF274 peaks 4 1258 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/16/c08bb10a-14f5-4966-bb73-f7659dde8c3a/ENCFF434LDY.bigBed\ labelFields none\ longLabel H1 ZNF274 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF434LDY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF782MNA ENCSR106OKX Signal bigWig Kidney tissue female embryo 120 days DNase signal 2 1258 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/3ef2c8be-9065-41ba-8c32-bb2368e001f5/ENCFF782MNA.bigWig\ color 6,218,147\ longLabel Kidney tissue female embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR106OKX Signal\ track wgEncodeReg4Epigenetics_ENCFF782MNA\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_rev Saos-2W/AscorbicAcidBgp_03hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse 0 1258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_rev Saos-2W/AscorbicAcidBgp_03hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse 1 1258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2003hr%2c%20biol_rep3%20%28A3%20T9%29.CNhs12883.12867-137E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 03hr, biol_rep3 (A3 T9)_CNhs12883_12867-137E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12867-137E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_03hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification03hrBiolRep3A3T9_CNhs12883_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12867-137E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF344IHV ENCSR000EUN Signal bigWig H1 ZNF274 ENCSR000EUN signal 2 1259 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/16/da532dfd-39c4-4c63-ac00-6ebce7aa3b08/ENCFF344IHV.bigWig\ color 118,158,101\ longLabel H1 ZNF274 ENCSR000EUN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUN Signal\ track wgEncodeReg4TfChip_ENCFF344IHV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF662ONK ENCSR106RBR Peak bigBed 5 Muscle of back tissue female embryo 115 days DNase peak 4 1259 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/93389ce6-5eb6-427d-a501-e41704b30477/ENCFF662ONK.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue female embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR106RBR Peak\ track wgEncodeReg4Epigenetics_ENCFF662ONK\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward 0 1259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward 1 1259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF329MAX ENCSR000EUO Peak bigBed 5 H1 CTBP2 peaks 4 1260 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/75f992f9-cae9-42cb-bf50-8e80fc051d45/ENCFF329MAX.bigBed\ labelFields none\ longLabel H1 CTBP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF329MAX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF954LCL ENCSR106RBR Signal bigWig Muscle of back tissue female embryo 115 days DNase signal 2 1260 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/af2f4cb8-a771-49d0-8fa2-b49355d50072/ENCFF954LCL.bigWig\ color 6,218,147\ longLabel Muscle of back tissue female embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR106RBR Signal\ track wgEncodeReg4Epigenetics_ENCFF954LCL\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse 0 1260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse 1 1260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep1%20%28A1%20T10%29.CNhs12391.12672-135A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep1 (A1 T10)_CNhs12391_12672-135A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12672-135A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep1A1T10_CNhs12391_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12672-135A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF389FDQ ENCSR000EUO Signal bigWig H1 CTBP2 ENCSR000EUO signal 2 1261 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/79053a83-8937-43db-98a6-3b97695a6998/ENCFF389FDQ.bigWig\ color 118,158,101\ longLabel H1 CTBP2 ENCSR000EUO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUO Signal\ track wgEncodeReg4TfChip_ENCFF389FDQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF588YKB ENCSR107RDP Peak bigBed 5 Heart right ventricle tissue male child 3 years H3K4me3 peak 4 1261 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2012fd25-12df-4845-9244-6ed96dec28ce/ENCFF588YKB.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue male child 3 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR107RDP Peak\ track wgEncodeReg4Epigenetics_ENCFF588YKB\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward 0 1261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward 1 1261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF601FOM ENCSR000EUP Peak bigBed 5 H1 MAX peaks 4 1262 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/28d814d5-58fa-4e10-8615-48949dee7db7/ENCFF601FOM.bigBed\ labelFields none\ longLabel H1 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF601FOM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF778FFI ENCSR107RDP Signal bigWig Heart right ventricle tissue male child 3 years H3K4me3 signal 2 1262 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9b589903-1613-4ddc-bdc0-c238d934c823/ENCFF778FFI.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue male child 3 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR107RDP Signal\ track wgEncodeReg4Epigenetics_ENCFF778FFI\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse 0 1262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse 1 1262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep2%20%28A2%20T10%29.CNhs12870.12770-136C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep2 (A2 T10)_CNhs12870_12770-136C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12770-136C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep2A2T10_CNhs12870_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12770-136C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF527TEZ ENCSR000EUP Signal bigWig H1 MAX ENCSR000EUP signal 2 1263 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/971ae55b-afc0-4601-8004-ad46cb56a01d/ENCFF527TEZ.bigWig\ color 118,158,101\ longLabel H1 MAX ENCSR000EUP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUP Signal\ track wgEncodeReg4TfChip_ENCFF527TEZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF982TNJ ENCSR107XZC Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase peak 4 1263 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/a9e9dbef-b8f9-4306-85dc-8acc8d1aa9c8/ENCFF982TNJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR107XZC Peak\ track wgEncodeReg4Epigenetics_ENCFF982TNJ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_fwd Saos-2W/AscorbicAcidBgp_04hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward 0 1263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_fwd Saos-2W/AscorbicAcidBgp_04hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward 1 1263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF507HGF ENCSR000EUQ Peak bigBed 5 H1 SUZ12 peaks 4 1264 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/763c34b0-9be0-4718-b988-0915867d8150/ENCFF507HGF.bigBed\ labelFields none\ longLabel H1 SUZ12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF507HGF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF473DSI ENCSR107XZC Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase signal 2 1264 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/6b195264-2131-4517-99fe-2b9717e23284/ENCFF473DSI.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR107XZC Signal\ track wgEncodeReg4Epigenetics_ENCFF473DSI\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_rev Saos-2W/AscorbicAcidBgp_04hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse 0 1264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_rev Saos-2W/AscorbicAcidBgp_04hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse 1 1264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2004hr%2c%20biol_rep3%20%28A3%20T10%29.CNhs12884.12868-137E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 04hr, biol_rep3 (A3 T10)_CNhs12884_12868-137E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12868-137E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_04hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification04hrBiolRep3A3T10_CNhs12884_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12868-137E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF498CWI ENCSR000EUQ Signal bigWig H1 SUZ12 ENCSR000EUQ signal 2 1265 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/41f021db-38de-4b92-8f08-3bc0bd54d1e4/ENCFF498CWI.bigWig\ color 118,158,101\ longLabel H1 SUZ12 ENCSR000EUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUQ Signal\ track wgEncodeReg4TfChip_ENCFF498CWI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF610VHE ENCSR108CCH Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 H3K27ac peak 4 1265 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/c6f27046-6313-40b4-b58e-fc9afb553c76/ENCFF610VHE.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108CCH Peak\ track wgEncodeReg4Epigenetics_ENCFF610VHE\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward 0 1265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward 1 1265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF849NGT ENCSR000EUU Peak bigBed 5 HCT116 POLR2A peaks 4 1266 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/dc7bf34d-6a32-434a-a496-c14a8202b198/ENCFF849NGT.bigBed\ labelFields none\ longLabel HCT116 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF849NGT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF008HLE ENCSR108CCH Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 H3K27ac signal 2 1266 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/1ac2dacf-bd25-4966-afde-4ae78eeb4bc5/ENCFF008HLE.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108CCH Signal\ track wgEncodeReg4Epigenetics_ENCFF008HLE\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse 0 1266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse 1 1266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep1%20%28A1%20T11%29.CNhs12392.12673-135A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep1 (A1 T11)_CNhs12392_12673-135A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12673-135A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep1A1T11_CNhs12392_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12673-135A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF802CGI ENCSR000EUU Signal bigWig HCT116 POLR2A ENCSR000EUU signal 2 1267 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/45bf9c82-16f3-48a4-b7cb-c3d2c0505acf/ENCFF802CGI.bigWig\ color 86,86,36\ longLabel HCT116 POLR2A ENCSR000EUU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUU Signal\ track wgEncodeReg4TfChip_ENCFF802CGI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF871URW ENCSR108NVQ Peak bigBed 5 Foreskin fibroblast male newborn H3K27ac peak 4 1267 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/0eecbdb3-d81b-45d6-867e-d91b3c480774/ENCFF871URW.bigBed\ color 181,145,0\ longLabel Foreskin fibroblast male newborn H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108NVQ Peak\ track wgEncodeReg4Epigenetics_ENCFF871URW\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward 0 1267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward 1 1267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF038POZ ENCSR000EUV Peak bigBed 5 HCT116 TCF7L2 peaks 4 1268 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/bcb0a84e-2577-496e-aefc-c5faae52fd70/ENCFF038POZ.bigBed\ labelFields none\ longLabel HCT116 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF038POZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF352ESC ENCSR108NVQ Signal bigWig Foreskin fibroblast male newborn H3K27ac signal 2 1268 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c2059e5f-a14c-4955-aab5-f434db11b68e/ENCFF352ESC.bigWig\ color 181,145,0\ longLabel Foreskin fibroblast male newborn H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108NVQ Signal\ track wgEncodeReg4Epigenetics_ENCFF352ESC\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse 0 1268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse 1 1268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep2%20%28A2%20T11%29.CNhs12871.12771-136C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep2 (A2 T11)_CNhs12871_12771-136C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12771-136C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep2A2T11_CNhs12871_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12771-136C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF957AFR ENCSR000EUV Signal bigWig HCT116 TCF7L2 ENCSR000EUV signal 2 1269 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/a0610c15-130b-42a9-aa4a-6f276f228b69/ENCFF957AFR.bigWig\ color 86,86,36\ longLabel HCT116 TCF7L2 ENCSR000EUV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUV Signal\ track wgEncodeReg4TfChip_ENCFF957AFR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF232HSD ENCSR108PUO Peak bigBed 5 GM23338 DNase peak 4 1269 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/ea9a0066-5355-4762-837e-5b343634fadd/ENCFF232HSD.bigBed\ color 6,218,147\ labelFields none\ longLabel GM23338 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108PUO Peak\ track wgEncodeReg4Epigenetics_ENCFF232HSD\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_fwd Saos-2W/AscorbicAcidBgp_08hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward 0 1269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_fwd Saos-2W/AscorbicAcidBgp_08hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward 1 1269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF513JQN ENCSR000EUY Peak bigBed 5 HEK293 TCF7L2 peaks 4 1270 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/09eea63f-9a57-446d-b286-6617439b9485/ENCFF513JQN.bigBed\ labelFields none\ longLabel HEK293 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF513JQN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF241UWA ENCSR108PUO Signal bigWig GM23338 DNase signal 2 1270 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/03f0bb16-355a-4b82-ac4f-85d5da818336/ENCFF241UWA.bigWig\ color 6,218,147\ longLabel GM23338 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108PUO Signal\ track wgEncodeReg4Epigenetics_ENCFF241UWA\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_rev Saos-2W/AscorbicAcidBgp_08hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse 0 1270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_rev Saos-2W/AscorbicAcidBgp_08hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse 1 1270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2008hr%2c%20biol_rep3%20%28A3%20T11%29.CNhs12885.12869-137E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 08hr, biol_rep3 (A3 T11)_CNhs12885_12869-137E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12869-137E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_08hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification08hrBiolRep3A3T11_CNhs12885_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12869-137E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF851WEQ ENCSR000EUY Signal bigWig HEK293 TCF7L2 ENCSR000EUY signal 2 1271 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/d5bda067-0f28-4322-ad3d-5d9079f837a6/ENCFF851WEQ.bigWig\ color 92,161,153\ longLabel HEK293 TCF7L2 ENCSR000EUY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUY Signal\ track wgEncodeReg4TfChip_ENCFF851WEQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF918ZUC ENCSR108SYM Peak bigBed 5 Psoas muscle tissue female adult 61 years DNase peak 4 1271 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/1a2c27ca-642a-44de-9120-18fb497ee3a8/ENCFF918ZUC.bigBed\ color 6,218,147\ labelFields none\ longLabel Psoas muscle tissue female adult 61 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108SYM Peak\ track wgEncodeReg4Epigenetics_ENCFF918ZUC\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward 0 1271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward 1 1271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF582MWI ENCSR000EUZ Peak bigBed 5 HEK293 TRIM28 peaks 4 1272 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7242a782-24ea-4c26-a698-6d40051967b1/ENCFF582MWI.bigBed\ labelFields none\ longLabel HEK293 TRIM28 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF582MWI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF750LPX ENCSR108SYM Signal bigWig Psoas muscle tissue female adult 61 years DNase signal 2 1272 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/6da0ff33-d217-49f0-b79b-eade191214ad/ENCFF750LPX.bigWig\ color 6,218,147\ longLabel Psoas muscle tissue female adult 61 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR108SYM Signal\ track wgEncodeReg4Epigenetics_ENCFF750LPX\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse 0 1272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse 1 1272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep1%20%28A1%20T12%29.CNhs12393.12674-135B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep1 (A1 T12)_CNhs12393_12674-135B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12674-135B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep1A1T12_CNhs12393_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12674-135B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF340FXG ENCSR000EUZ Signal bigWig HEK293 TRIM28 ENCSR000EUZ signal 2 1273 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/de51c6fe-e2cb-4837-8420-ff43d7eabe02/ENCFF340FXG.bigWig\ color 92,161,153\ longLabel HEK293 TRIM28 ENCSR000EUZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EUZ Signal\ track wgEncodeReg4TfChip_ENCFF340FXG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF438WQB ENCSR109DTU Peak bigBed 5 Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours DNase peak 4 1273 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/e7cb8171-279e-4a26-ac3f-4ada038a0c4c/ENCFF438WQB.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR109DTU Peak\ track wgEncodeReg4Epigenetics_ENCFF438WQB\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward 0 1273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward 1 1273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF336CWQ ENCSR000EVD Peak bigBed 5 HEK293 ZNF263 peaks 4 1274 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/d29bf272-52ed-4154-b2e2-c02e413d6d4d/ENCFF336CWQ.bigBed\ labelFields none\ longLabel HEK293 ZNF263 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF336CWQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF230LAU ENCSR109DTU Signal bigWig Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours DNase signal 2 1274 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/ebf9d085-b2ab-4c2c-bd6e-c6663c77de48/ENCFF230LAU.bigWig\ color 6,218,147\ longLabel Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR109DTU Signal\ track wgEncodeReg4Epigenetics_ENCFF230LAU\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse 0 1274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse 1 1274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep2%20%28A2%20T12%29.CNhs12872.12772-136C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep2 (A2 T12)_CNhs12872_12772-136C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12772-136C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep2A2T12_CNhs12872_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12772-136C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF510DFY ENCSR000EVD Signal bigWig HEK293 ZNF263 ENCSR000EVD signal 2 1275 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/f56ae0bf-8cea-472f-8629-3898fed59224/ENCFF510DFY.bigWig\ color 92,161,153\ longLabel HEK293 ZNF263 ENCSR000EVD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVD Signal\ track wgEncodeReg4TfChip_ENCFF510DFY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF521ZBJ ENCSR109RIQ Peak bigBed 5 Excitatory neuron DNase peak 4 1275 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/13/566bcb08-51fb-4a7f-9496-435c88002a90/ENCFF521ZBJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Excitatory neuron DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR109RIQ Peak\ track wgEncodeReg4Epigenetics_ENCFF521ZBJ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_fwd Saos-2W/AscorbicAcidBgp_24hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward 0 1275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_fwd Saos-2W/AscorbicAcidBgp_24hrBr3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward 1 1275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF673QAB ENCSR000EVE Peak bigBed 5 HeLa-S3 TCF7L2 peaks 4 1276 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/9c956ec9-9dec-40e6-91bf-744b33a1ffe8/ENCFF673QAB.bigBed\ labelFields none\ longLabel HeLa-S3 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF673QAB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF269VAY ENCSR109RIQ Signal bigWig Excitatory neuron DNase signal 2 1276 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/13/b31be7d7-0cba-4572-a94a-149bee7da183/ENCFF269VAY.bigWig\ color 6,218,147\ longLabel Excitatory neuron DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR109RIQ Signal\ track wgEncodeReg4Epigenetics_ENCFF269VAY\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_rev Saos-2W/AscorbicAcidBgp_24hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse 0 1276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_rev Saos-2W/AscorbicAcidBgp_24hrBr3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse 1 1276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%2024hr%2c%20biol_rep3%20%28A3%20T12%29.CNhs12886.12870-137E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, 24hr, biol_rep3 (A3 T12)_CNhs12886_12870-137E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12870-137E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_24hrBr3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcification24hrBiolRep3A3T12_CNhs12886_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12870-137E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF390UCE ENCSR000EVE Signal bigWig HeLa-S3 TCF7L2 ENCSR000EVE signal 2 1277 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/bee0dc12-b036-4f4e-bac3-7a2a8e83010b/ENCFF390UCE.bigWig\ color 186,111,165\ longLabel HeLa-S3 TCF7L2 ENCSR000EVE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVE Signal\ track wgEncodeReg4TfChip_ENCFF390UCE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF402ODR ENCSR111LTT Peak bigBed 5 T-cell male adult 55 years DNase peak 4 1277 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/71850b3b-17c5-43e2-9f35-ac0f6611527f/ENCFF402ODR.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 55 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR111LTT Peak\ track wgEncodeReg4Epigenetics_ENCFF402ODR\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward 0 1277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward 1 1277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF084KRL ENCSR000EVF Peak bigBed 5 HeLa-S3 TCF7L2 peaks 4 1278 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/93095494-1d46-4f53-9bd1-bdde809d709e/ENCFF084KRL.bigBed\ labelFields none\ longLabel HeLa-S3 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF084KRL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF372KSU ENCSR111LTT Signal bigWig T-cell male adult 55 years DNase signal 2 1278 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/2a619460-0f59-4893-a81b-933536768afd/ENCFF372KSU.bigWig\ color 6,218,147\ longLabel T-cell male adult 55 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR111LTT Signal\ track wgEncodeReg4Epigenetics_ENCFF372KSU\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse 0 1278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse 1 1278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep1%20%28A1%20T13%29.CNhs12394.12675-135B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep1 (A1 T13)_CNhs12394_12675-135B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12675-135B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep1A1T13_CNhs12394_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12675-135B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF996KVT ENCSR000EVF Signal bigWig HeLa-S3 TCF7L2 ENCSR000EVF signal 2 1279 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/62a1d167-6cac-43de-a871-cc644e2e6168/ENCFF996KVT.bigWig\ color 186,111,165\ longLabel HeLa-S3 TCF7L2 ENCSR000EVF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVF Signal\ track wgEncodeReg4TfChip_ENCFF996KVT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF231XEV ENCSR111QCU Peak bigBed 5 Brain microvascular endothelial cell H3K27ac peak 4 1279 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/bc72ea2c-a4f9-4eda-9dfc-b4615304f077/ENCFF231XEV.bigBed\ color 181,145,0\ longLabel Brain microvascular endothelial cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR111QCU Peak\ track wgEncodeReg4Epigenetics_ENCFF231XEV\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward 0 1279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward 1 1279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF727BQM ENCSR000EVI Peak bigBed 5 HeLa-S3 ELK4 peaks 4 1280 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/af19f66e-e19e-43c4-a9cd-1af2efaff904/ENCFF727BQM.bigBed\ labelFields none\ longLabel HeLa-S3 ELK4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF727BQM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF575FKS ENCSR111QCU Signal bigWig Brain microvascular endothelial cell H3K27ac signal 2 1280 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/07f3ee09-22a1-46d2-b9df-2cd867d53a2e/ENCFF575FKS.bigWig\ color 181,145,0\ longLabel Brain microvascular endothelial cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR111QCU Signal\ track wgEncodeReg4Epigenetics_ENCFF575FKS\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse 0 1280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse 1 1280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep2%20%28A2%20T13%29.CNhs12873.12773-136D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep2 (A2 T13)_CNhs12873_12773-136D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12773-136D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep2A2T13_CNhs12873_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12773-136D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF955ZTX ENCSR000EVI Signal bigWig HeLa-S3 ELK4 ENCSR000EVI signal 2 1281 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/7ae47a13-9072-4695-9581-5372a6796d57/ENCFF955ZTX.bigWig\ color 186,111,165\ longLabel HeLa-S3 ELK4 ENCSR000EVI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVI Signal\ track wgEncodeReg4TfChip_ENCFF955ZTX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF500TSF ENCSR111WTE Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interferon alpha-2 for 1 hour DNase peak 4 1281 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/b29cd4ab-c2df-45bc-9ef0-37c914b9e5a1/ENCFF500TSF.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interferon alpha-2 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR111WTE Peak\ track wgEncodeReg4Epigenetics_ENCFF500TSF\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_fwd Saos-2W/AscorbicAcidBgp_Day04Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward 0 1281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_fwd Saos-2W/AscorbicAcidBgp_Day04Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward 1 1281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF170ZHA ENCSR000EVJ Peak bigBed 5 HeLa-S3 E2F1 peaks 4 1282 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/35d27fc9-f179-42c4-bc73-2dfa6ed1d83b/ENCFF170ZHA.bigBed\ labelFields none\ longLabel HeLa-S3 E2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF170ZHA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF905PYG ENCSR111WTE Signal bigWig CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interferon alpha-2 for 1 hour DNase signal 2 1282 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/50746fdc-96e0-498f-b20c-145047c371aa/ENCFF905PYG.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interferon alpha-2 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR111WTE Signal\ track wgEncodeReg4Epigenetics_ENCFF905PYG\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_rev Saos-2W/AscorbicAcidBgp_Day04Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse 0 1282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_rev Saos-2W/AscorbicAcidBgp_Day04Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse 1 1282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day04%2c%20biol_rep3%20%28A3%20T13%29.CNhs12887.12871-137E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day04, biol_rep3 (A3 T13)_CNhs12887_12871-137E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12871-137E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day04Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay04BiolRep3A3T13_CNhs12887_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12871-137E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF296QBC ENCSR000EVJ Signal bigWig HeLa-S3 E2F1 ENCSR000EVJ signal 2 1283 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/cc9268ea-48d9-47dc-8180-4431af2866c1/ENCFF296QBC.bigWig\ color 186,111,165\ longLabel HeLa-S3 E2F1 ENCSR000EVJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVJ Signal\ track wgEncodeReg4TfChip_ENCFF296QBC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF483VMR ENCSR112AKE Peak bigBed 5 Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 1283 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/f3826156-0dc1-4d2c-8b25-ce37cf60f48e/ENCFF483VMR.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR112AKE Peak\ track wgEncodeReg4Epigenetics_ENCFF483VMR\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward 0 1283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward 1 1283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF766OCY ENCSR000EVK Peak bigBed 5 HeLa-S3 E2F6 peaks 4 1284 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/0edb120c-ff46-4e32-8749-140a1e303d21/ENCFF766OCY.bigBed\ labelFields none\ longLabel HeLa-S3 E2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF766OCY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF656WBC ENCSR112AKE Signal bigWig Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 1284 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/b173acca-79b6-47f3-ace1-7bd6763366d7/ENCFF656WBC.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR112AKE Signal\ track wgEncodeReg4Epigenetics_ENCFF656WBC\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse 0 1284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse 1 1284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep1%20%28A1%20T14%29.CNhs12395.12676-135B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep1 (A1 T14)_CNhs12395_12676-135B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12676-135B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep1A1T14_CNhs12395_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12676-135B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF962XXU ENCSR000EVK Signal bigWig HeLa-S3 E2F6 ENCSR000EVK signal 2 1285 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/9ec4a3dd-06b0-44ea-be1f-e203a0b38685/ENCFF962XXU.bigWig\ color 186,111,165\ longLabel HeLa-S3 E2F6 ENCSR000EVK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVK Signal\ track wgEncodeReg4TfChip_ENCFF962XXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF245KEE ENCSR113COJ Peak bigBed 5 Pancreas tissue female adult 59 years CTCF peak 4 1285 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/9f30d166-a3ae-4b0d-b23a-077ef7676f75/ENCFF245KEE.bigBed\ color 0,176,240\ labelFields none\ longLabel Pancreas tissue female adult 59 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR113COJ Peak\ track wgEncodeReg4Epigenetics_ENCFF245KEE\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward 0 1285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward 1 1285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF669WYW ENCSR000EVL Peak bigBed 5 HeLa-S3 E2F4 peaks 4 1286 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/1749a6a0-0dab-449a-9e91-9c940a93a39d/ENCFF669WYW.bigBed\ labelFields none\ longLabel HeLa-S3 E2F4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF669WYW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF297EQI ENCSR113COJ Signal bigWig Pancreas tissue female adult 59 years CTCF signal 2 1286 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2598c609-8925-4cb2-ba14-51b678d68b88/ENCFF297EQI.bigWig\ color 0,176,240\ longLabel Pancreas tissue female adult 59 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR113COJ Signal\ track wgEncodeReg4Epigenetics_ENCFF297EQI\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse 0 1286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse 1 1286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep2%20%28A2%20T14%29.CNhs12874.12774-136D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep2 (A2 T14)_CNhs12874_12774-136D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12774-136D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep2A2T14_CNhs12874_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12774-136D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF877AEN ENCSR000EVM Peak bigBed 5 HeLa-S3 stably expressing E2F1 E2F1 peaks 4 1287 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/1781b137-47a9-4a6b-88a1-4de4e960cf8a/ENCFF877AEN.bigBed\ labelFields none\ longLabel HeLa-S3 stably expressing E2F1 E2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF877AEN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF920FUB ENCSR113DHB Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 1287 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/72ad196d-5f5f-4ce1-b17e-a0095e934838/ENCFF920FUB.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR113DHB Peak\ track wgEncodeReg4Epigenetics_ENCFF920FUB\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_fwd Saos-2W/AscorbicAcidBgp_Day07Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward 0 1287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_fwd Saos-2W/AscorbicAcidBgp_Day07Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward 1 1287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF819FVH ENCSR000EVM Signal bigWig HeLa-S3 stably expressing E2F1 E2F1 ENCSR000EVM signal 2 1288 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/502e6166-b3e6-4f25-8601-216f8bdf494d/ENCFF819FVH.bigWig\ color 186,111,165\ longLabel HeLa-S3 stably expressing E2F1 E2F1 ENCSR000EVM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVM Signal\ track wgEncodeReg4TfChip_ENCFF819FVH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF394XCQ ENCSR113DHB Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 1288 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/4696ccde-1b2e-4a72-9cb7-aa1c10642791/ENCFF394XCQ.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR113DHB Signal\ track wgEncodeReg4Epigenetics_ENCFF394XCQ\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_rev Saos-2W/AscorbicAcidBgp_Day07Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse 0 1288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_rev Saos-2W/AscorbicAcidBgp_Day07Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse 1 1288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day07%2c%20biol_rep3%20%28A3%20T14%29.CNhs12888.12872-137F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day07, biol_rep3 (A3 T14)_CNhs12888_12872-137F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12872-137F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day07Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay07BiolRep3A3T14_CNhs12888_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12872-137F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF796ZSS ENCSR000EVN Peak bigBed 5 HeLa-S3 NR2C2 peaks 4 1289 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/10a9fc65-4c92-4e05-99b4-fd1ab8cef3d2/ENCFF796ZSS.bigBed\ labelFields none\ longLabel HeLa-S3 NR2C2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF796ZSS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF724EWH ENCSR113MBR Peak bigBed 5 Adrenal gland tissue male adult 54 years ATAC peak 4 1289 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/675d6a2c-0782-4770-8458-f9c6cdb0ee88/ENCFF724EWH.bigBed\ color 2,199,185\ longLabel Adrenal gland tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR113MBR Peak\ track wgEncodeReg4Epigenetics_ENCFF724EWH\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward 0 1289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward 1 1289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF499WRL ENCSR000EVN Signal bigWig HeLa-S3 NR2C2 ENCSR000EVN signal 2 1290 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/a2685c78-0596-4a54-ba35-14c062a4ea91/ENCFF499WRL.bigWig\ color 186,111,165\ longLabel HeLa-S3 NR2C2 ENCSR000EVN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVN Signal\ track wgEncodeReg4TfChip_ENCFF499WRL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF469CYE ENCSR113MBR Signal bigWig Adrenal gland tissue male adult 54 years ATAC signal 2 1290 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/2ab79344-a828-4644-bc31-0aff69a0d5cc/ENCFF469CYE.bigWig\ color 2,199,185\ longLabel Adrenal gland tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR113MBR Signal\ track wgEncodeReg4Epigenetics_ENCFF469CYE\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse 0 1290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse 1 1290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep1%20%28A1%20T15%29.CNhs12396.12677-135B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep1 (A1 T15)_CNhs12396_12677-135B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12677-135B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep1A1T15_CNhs12396_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12677-135B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF125ABE ENCSR000EVQ Peak bigBed 5 HepG2 TCF7L2 peaks 4 1291 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/30fcccba-26e5-439f-b012-85509b0476de/ENCFF125ABE.bigBed\ labelFields none\ longLabel HepG2 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF125ABE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF610OPJ ENCSR114XWV Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase peak 4 1291 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/ce490815-44ed-415e-8ac9-92e68b4ce436/ENCFF610OPJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR114XWV Peak\ track wgEncodeReg4Epigenetics_ENCFF610OPJ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward 0 1291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward 1 1291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF559TQB ENCSR000EVQ Signal bigWig HepG2 TCF7L2 ENCSR000EVQ signal 2 1292 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/0bbbeb33-704a-42a9-a3cf-71149517eb4c/ENCFF559TQB.bigWig\ color 137,152,82\ longLabel HepG2 TCF7L2 ENCSR000EVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVQ Signal\ track wgEncodeReg4TfChip_ENCFF559TQB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF485ZYC ENCSR114XWV Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase signal 2 1292 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/fb621aec-af9b-47e9-bf0d-82896d903743/ENCFF485ZYC.bigWig\ color 6,218,147\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR114XWV Signal\ track wgEncodeReg4Epigenetics_ENCFF485ZYC\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse 0 1292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse 1 1292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep2%20%28A2%20T15%29.CNhs12953.12775-136D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep2 (A2 T15)_CNhs12953_12775-136D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12775-136D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep2A2T15_CNhs12953_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12775-136D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF026DHW ENCSR000EVS Peak bigBed 5 HepG2 NR2C2 peaks 4 1293 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6be1e2ee-2a12-4e72-8934-2d88eef6b87c/ENCFF026DHW.bigBed\ labelFields none\ longLabel HepG2 NR2C2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF026DHW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF470OGV ENCSR115FGJ Peak bigBed 5 Naive B cell H3K4me3 peak 4 1293 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9717537d-4582-45aa-b951-34c2e58728f7/ENCFF470OGV.bigBed\ color 255,0,0\ longLabel Naive B cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR115FGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF470OGV\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_fwd Saos-2W/AscorbicAcidBgp_Day14Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward 0 1293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_fwd Saos-2W/AscorbicAcidBgp_Day14Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward 1 1293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF410HBT ENCSR000EVS Signal bigWig HepG2 NR2C2 ENCSR000EVS signal 2 1294 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/07b1446d-c3c6-4b75-9138-f1676f570d57/ENCFF410HBT.bigWig\ color 137,152,82\ longLabel HepG2 NR2C2 ENCSR000EVS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVS Signal\ track wgEncodeReg4TfChip_ENCFF410HBT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF692PQC ENCSR115FGJ Signal bigWig Naive B cell H3K4me3 signal 2 1294 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/68f66a58-dc39-4421-b377-93e9e9df4b24/ENCFF692PQC.bigWig\ color 255,0,0\ longLabel Naive B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR115FGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF692PQC\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_rev Saos-2W/AscorbicAcidBgp_Day14Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse 0 1294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_rev Saos-2W/AscorbicAcidBgp_Day14Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse 1 1294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day14%2c%20biol_rep3%20%28A3%20T15%29.CNhs12890.12873-137F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day14, biol_rep3 (A3 T15)_CNhs12890_12873-137F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12873-137F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day14Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay14BiolRep3A3T15_CNhs12890_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12873-137F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF415XBG ENCSR000EVU Peak bigBed 5 Endothelial cell of umbilical vein newborn FOS peaks 4 1295 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/7f560049-30ed-4497-9067-8b75912d64fd/ENCFF415XBG.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn FOS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF415XBG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF083NIU ENCSR115OIV Peak bigBed 5 Activated T-helper 17 cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak 4 1295 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/cd82218d-0fae-4776-b356-10b8dc18fca2/ENCFF083NIU.bigBed\ color 2,199,185\ longLabel Activated T-helper 17 cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR115OIV Peak\ track wgEncodeReg4Epigenetics_ENCFF083NIU\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward 0 1295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward 1 1295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF301XXM ENCSR000EVU Signal bigWig Endothelial cell of umbilical vein newborn FOS ENCSR000EVU signal 2 1296 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/7482e9c9-f386-42a9-933a-36907f66eb82/ENCFF301XXM.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn FOS ENCSR000EVU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVU Signal\ track wgEncodeReg4TfChip_ENCFF301XXM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF141ATK ENCSR115OIV Signal bigWig Activated T-helper 17 cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal 2 1296 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/a2bc6d79-d60b-4690-8d09-8b6b92c2fdae/ENCFF141ATK.bigWig\ color 2,199,185\ longLabel Activated T-helper 17 cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR115OIV Signal\ track wgEncodeReg4Epigenetics_ENCFF141ATK\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse 0 1296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse 1 1296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep1%20%28A1%20T16%29.CNhs12397.12678-135B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep1 (A1 T16)_CNhs12397_12678-135B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12678-135B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep1A1T16_CNhs12397_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12678-135B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF148NLK ENCSR000EVW Peak bigBed 5 Endothelial cell of umbilical vein newborn GATA2 peaks 4 1297 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/95b3b4ae-ebf6-4370-9a43-55ec85a9cec0/ENCFF148NLK.bigBed\ labelFields none\ longLabel Endothelial cell of umbilical vein newborn GATA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF148NLK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF009QXX ENCSR115YPI Peak bigBed 5 Hematopoietic multipotent progenitor cell treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days DNase peak 4 1297 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/d85c7a74-8f01-492a-89f2-987996d6ad47/ENCFF009QXX.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR115YPI Peak\ track wgEncodeReg4Epigenetics_ENCFF009QXX\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward 0 1297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_fwd Saos-2W/AscorbicAcidBgp_Day21Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward 1 1297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF126VAU ENCSR000EVW Signal bigWig Endothelial cell of umbilical vein newborn GATA2 ENCSR000EVW signal 2 1298 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/be116d20-7250-45aa-87dc-714a670dc66c/ENCFF126VAU.bigWig\ color 255,37,41\ longLabel Endothelial cell of umbilical vein newborn GATA2 ENCSR000EVW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVW Signal\ track wgEncodeReg4TfChip_ENCFF126VAU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF338HAQ ENCSR115YPI Signal bigWig Hematopoietic multipotent progenitor cell treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days DNase signal 2 1298 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/933f613b-90d5-460d-a16a-c199d7b30f13/ENCFF338HAQ.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with erythropoietin for 20 days, hydrocortisone succinate for 20 days, kit ligand for 20 days, interleukin-3 for 20 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR115YPI Signal\ track wgEncodeReg4Epigenetics_ENCFF338HAQ\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_rev Saos-2W/AscorbicAcidBgp_Day21Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse 0 1298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_rev Saos-2W/AscorbicAcidBgp_Day21Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse 1 1298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep2%20%28A2%20T16%29.CNhs12875.12776-136D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep2 (A2 T16)_CNhs12875_12776-136D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12776-136D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day21Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep2A2T16_CNhs12875_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12776-136D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF187RMG ENCSR000EVX Peak bigBed 5 K562 ZNF274 peaks 4 1299 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/56657e40-5929-4e25-9ef7-fd61988dda85/ENCFF187RMG.bigBed\ labelFields none\ longLabel K562 ZNF274 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF187RMG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF548ZVE ENCSR116MKX Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 88 years H3K27ac peak 4 1299 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/56db0833-98e0-408c-8c92-e8d168b540eb/ENCFF548ZVE.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 88 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR116MKX Peak\ track wgEncodeReg4Epigenetics_ENCFF548ZVE\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay21BiolRep3A3T16_CNhs12891_ctss_fwd Saos-2W/AscorbicAcidBgp_Day21Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward 0 1299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day21%2c%20biol_rep3%20%28A3%20T16%29.CNhs12891.12874-137F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day21, biol_rep3 (A3 T16)_CNhs12891_12874-137F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12874-137F3 sequence_tech=hCAGE\ 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http://fantom.gsc.riken.jp/5/sstar/FF:12874-137F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF671NCI ENCSR000EVY Peak bigBed 5 K562 TRIM28 peaks 4 1301 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/f1281a0a-871c-408e-ac97-a626efe52e3e/ENCFF671NCI.bigBed\ labelFields none\ longLabel K562 TRIM28 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR116UQH Peak\ track wgEncodeReg4Epigenetics_ENCFF550QZW\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward 0 1301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br1+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward 1 1301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF101JVS ENCSR000EVY Signal bigWig K562 TRIM28 ENCSR000EVY signal 2 1302 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/7adf7e37-3bb3-49ba-8f44-5b627c02752b/ENCFF101JVS.bigWig\ color 254,75,173\ longLabel K562 TRIM28 ENCSR000EVY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EVY Signal\ track wgEncodeReg4TfChip_ENCFF101JVS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF936VRA ENCSR116UQH Signal bigWig Head of caudate nucleus tissue female adult 89 years DNase signal 2 1302 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b430fc90-0c2b-4dd3-9ae2-82524ebfb293/ENCFF936VRA.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR116UQH Signal\ track wgEncodeReg4Epigenetics_ENCFF936VRA\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse 0 1302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br1- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse 1 1302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep1%20%28A1%20T17%29.CNhs11919.12679-135B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep1 (A1 T17)_CNhs11919_12679-135B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12679-135B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br1-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep1A1T17_CNhs11919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12679-135B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF348FRY ENCSR000EWD Peak bigBed 5 K562 SETDB1 peaks 4 1303 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/4e49ae7e-c870-4248-81f2-50e7a5e99e88/ENCFF348FRY.bigBed\ labelFields none\ longLabel K562 SETDB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF348FRY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF005XUQ ENCSR116WWW Peak bigBed 5 Small intestine tissue female embryo 120 days DNase peak 4 1303 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/5b9797d1-4163-4233-9978-94ab6dfd603f/ENCFF005XUQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue female embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR116WWW Peak\ track wgEncodeReg4Epigenetics_ENCFF005XUQ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward 0 1303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br2+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward 1 1303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF134HNV ENCSR000EWD Signal bigWig K562 SETDB1 ENCSR000EWD signal 2 1304 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/e2d20437-3512-4ec6-b234-1f44701d7535/ENCFF134HNV.bigWig\ color 254,75,173\ longLabel K562 SETDB1 ENCSR000EWD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWD Signal\ track wgEncodeReg4TfChip_ENCFF134HNV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF820HMC ENCSR116WWW Signal bigWig Small intestine tissue female embryo 120 days DNase signal 2 1304 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/30ed69b9-2eb1-4e04-8aa3-0836d769bf9b/ENCFF820HMC.bigWig\ color 6,218,147\ longLabel Small intestine tissue female embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR116WWW Signal\ track wgEncodeReg4Epigenetics_ENCFF820HMC\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse 0 1304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br2- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse 1 1304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep2%20%28A2%20T17%29.CNhs12876.12777-136D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep2 (A2 T17)_CNhs12876_12777-136D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12777-136D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br2-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep2A2T17_CNhs12876_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12777-136D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF768DPZ ENCSR000EWF Peak bigBed 5 K562 YY1 peaks 4 1305 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/4af84186-e867-46f2-98c2-abff0d7dc4ad/ENCFF768DPZ.bigBed\ labelFields none\ longLabel K562 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF768DPZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF678DPJ ENCSR117PYB Peak bigBed 5 Heart left ventricle tissue female adult 51 years ATAC peak 4 1305 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/0dc8e664-16e9-4868-84bd-b56f2f745e88/ENCFF678DPJ.bigBed\ color 2,199,185\ longLabel Heart left ventricle tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR117PYB Peak\ track wgEncodeReg4Epigenetics_ENCFF678DPJ\ type bigBed 5\ visibility squish\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_fwd Saos-2W/AscorbicAcidBgp_Day28Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward 0 1305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_fwd Saos-2W/AscorbicAcidBgp_Day28Br3+ bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward 1 1305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3+\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=forward\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF480HTQ ENCSR000EWF Signal bigWig K562 YY1 ENCSR000EWF signal 2 1306 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/7885e660-688f-46d0-b574-ade07507908a/ENCFF480HTQ.bigWig\ color 254,75,173\ longLabel K562 YY1 ENCSR000EWF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWF Signal\ track wgEncodeReg4TfChip_ENCFF480HTQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF065BYP ENCSR117PYB Signal bigWig Heart left ventricle tissue female adult 51 years ATAC signal 2 1306 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/855d60e2-9365-40af-9706-c06a29ff50b1/ENCFF065BYP.bigWig\ color 2,199,185\ longLabel Heart left ventricle tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR117PYB Signal\ track wgEncodeReg4Epigenetics_ENCFF065BYP\ type bigWig\ visibility full\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_rev Saos-2W/AscorbicAcidBgp_Day28Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse 0 1306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_rev Saos-2W/AscorbicAcidBgp_Day28Br3- bigWig Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse 1 1306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20treated%20with%20ascorbic%20acid%20and%20BGP%20to%20induce%20calcification%2c%20day28%2c%20biol_rep3%20%28A3%20T17%29.CNhs12892.12875-137F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma treated with ascorbic acid and BGP to induce calcification, day28, biol_rep3 (A3 T17)_CNhs12892_12875-137F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12875-137F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Saos-2W/AscorbicAcidBgp_Day28Br3-\ subGroups sequenceTech=hCAGE category=Saos_calcification strand=reverse\ track Saos2OsteosarcomaTreatedWithAscorbicAcidAndBGPToInduceCalcificationDay28BiolRep3A3T17_CNhs12892_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12875-137F4\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_fwd Cl:HIRS-BM+ bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward 0 1307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HIRS-BM+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_fwd Cl:HIRS-BM+ bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward 1 1307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HIRS-BM+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF513FTZ ENCSR000EWG Peak bigBed 5 K562 GATA2 peaks 4 1307 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/f682c0ff-9458-460a-bfc1-77449971e991/ENCFF513FTZ.bigBed\ labelFields none\ longLabel K562 GATA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF513FTZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF543KAS ENCSR118WIQ Peak bigBed 5 Brain tissue embryo 112 days DNase peak 4 1307 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/dfd0168e-12fa-4f7a-977b-ab00663a4409/ENCFF543KAS.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue embryo 112 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR118WIQ Peak\ track wgEncodeReg4Epigenetics_ENCFF543KAS\ type bigBed 5\ visibility squish\ MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_rev Cl:HIRS-BM- bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse 0 1308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HIRS-BM-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesodermalTumorCellLineHIRSBM_CNhs12191_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_rev Cl:HIRS-BM- bigWig mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse 1 1308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesodermal%20tumor%20cell%20line%3aHIRS-BM.CNhs12191.10696-109G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesodermal tumor cell line:HIRS-BM_CNhs12191_10696-109G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10696-109G3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HIRS-BM-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesodermalTumorCellLineHIRSBM_CNhs12191_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10696-109G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF582TIG ENCSR000EWG Signal bigWig K562 GATA2 ENCSR000EWG signal 2 1308 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/3a3cefea-1385-480f-83ee-b5f6af1d5851/ENCFF582TIG.bigWig\ color 254,75,173\ longLabel K562 GATA2 ENCSR000EWG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWG Signal\ track wgEncodeReg4TfChip_ENCFF582TIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF828DSX ENCSR118WIQ Signal bigWig Brain tissue embryo 112 days DNase signal 2 1308 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/2c308a40-6c37-41f0-b8a5-cd2f8d7db348/ENCFF828DSX.bigWig\ color 6,218,147\ longLabel Brain tissue embryo 112 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR118WIQ Signal\ track wgEncodeReg4Epigenetics_ENCFF828DSX\ type bigWig\ visibility full\ LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_fwd Cl:Hs5_T+ bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward 0 1309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs5_T+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_fwd Cl:Hs5_T+ bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward 1 1309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs5_T+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF745PAW ENCSR000EWI Peak bigBed 5 K562 SETDB1 peaks 4 1309 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/50d40134-92ad-4dac-953c-685ceadb4202/ENCFF745PAW.bigBed\ labelFields none\ longLabel K562 SETDB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF745PAW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF608LQV ENCSR119HXE Peak bigBed 5 Stomach tissue female embryo 105 days DNase peak 4 1309 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/07550aba-a733-4341-be50-72127b7a0ac5/ENCFF608LQV.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR119HXE Peak\ track wgEncodeReg4Epigenetics_ENCFF608LQV\ type bigBed 5\ visibility squish\ LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_rev Cl:Hs5_T- bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse 0 1310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs5_T-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_rev Cl:Hs5_T- bigWig leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse 1 1310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyosarcoma%20cell%20line%3aHs%205%2eT.CNhs12192.10722-110A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leiomyosarcoma cell line:Hs 5_T_CNhs12192_10722-110A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10722-110A2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs5_T-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track LeiomyosarcomaCellLineHs5_T_CNhs12192_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10722-110A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF989IND ENCSR000EWI Signal bigWig K562 SETDB1 ENCSR000EWI signal 2 1310 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/2ba15917-e73e-4d92-a928-298ef695f44a/ENCFF989IND.bigWig\ color 254,75,173\ longLabel K562 SETDB1 ENCSR000EWI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWI Signal\ track wgEncodeReg4TfChip_ENCFF989IND\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF338HPK ENCSR119HXE Signal bigWig Stomach tissue female embryo 105 days DNase signal 2 1310 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/15a3e57d-801b-40e1-8cb9-ed1af8724ee4/ENCFF338HPK.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR119HXE Signal\ track wgEncodeReg4Epigenetics_ENCFF338HPK\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_ctss_fwd Cl:Kasumi-3+ bigWig acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward 0 1311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKasumi-3.CNhs13241.10789-110H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Kasumi-3+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_fwd Cl:Kasumi-3+ bigWig acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward 1 1311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKasumi-3.CNhs13241.10789-110H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-3+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF163WMT ENCSR000EWJ Peak bigBed 5 K562 E2F6 peaks 4 1311 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/c486c50e-34fd-4721-b9dc-ba6664351c82/ENCFF163WMT.bigBed\ labelFields none\ longLabel K562 E2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF163WMT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF067ZSA ENCSR120LVW Peak bigBed 5 Left kidney tissue female embryo 98 days DNase peak 4 1311 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/5dd2f0fc-f868-4dd4-a6b9-9f72e0bf1b29/ENCFF067ZSA.bigBed\ color 6,218,147\ labelFields none\ longLabel Left kidney tissue female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120LVW Peak\ track wgEncodeReg4Epigenetics_ENCFF067ZSA\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_ctss_rev Cl:Kasumi-3- bigWig acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_reverse 0 1312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKasumi-3.CNhs13241.10789-110H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Kasumi-3-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_rev Cl:Kasumi-3- bigWig acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_reverse 1 1312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKasumi-3.CNhs13241.10789-110H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M0) cell line:Kasumi-3_CNhs13241_10789-110H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10789-110H6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-3-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM0CellLineKasumi3_CNhs13241_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10789-110H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF440PPQ ENCSR000EWJ Signal bigWig K562 E2F6 ENCSR000EWJ signal 2 1312 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5135a002-b84b-46e1-9587-dba6a449bf2e/ENCFF440PPQ.bigWig\ color 254,75,173\ longLabel K562 E2F6 ENCSR000EWJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWJ Signal\ track wgEncodeReg4TfChip_ENCFF440PPQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF956ZRT ENCSR120LVW Signal bigWig Left kidney tissue female embryo 98 days DNase signal 2 1312 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/686d7c3b-ad05-4f1c-9d15-3d5577c9d7c4/ENCFF956ZRT.bigWig\ color 6,218,147\ longLabel Left kidney tissue female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120LVW Signal\ track wgEncodeReg4Epigenetics_ENCFF956ZRT\ type bigWig\ visibility full\ MesotheliomaCellLineMero14TechRep2_CNhs14376_ctss_fwd Cl:Mero-14Tr2+ bigWig mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_forward 0 1313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep2.CNhs14376.10849-111F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-14Tr2+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero14TechRep2_CNhs14376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero14TechRep2_CNhs14376_tpm_fwd Cl:Mero-14Tr2+ bigWig mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_forward 1 1313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep2.CNhs14376.10849-111F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-14Tr2+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero14TechRep2_CNhs14376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF950BEB ENCSR000EWL Peak bigBed 5 K562 E2F4 peaks 4 1313 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/ac6b5672-b14c-46c2-b984-1d7ad14e1c64/ENCFF950BEB.bigBed\ labelFields none\ longLabel K562 E2F4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF950BEB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF177FIT ENCSR120MOY Peak bigBed 5 Sciatic nerve tissue male adult 26 years ATAC peak 4 1313 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/4ea11d7e-01dc-4b66-98f6-2d60a8b01e8e/ENCFF177FIT.bigBed\ color 2,199,185\ longLabel Sciatic nerve tissue male adult 26 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120MOY Peak\ track wgEncodeReg4Epigenetics_ENCFF177FIT\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero14TechRep2_CNhs14376_ctss_rev Cl:Mero-14Tr2- bigWig mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse 0 1314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep2.CNhs14376.10849-111F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-14Tr2-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero14TechRep2_CNhs14376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero14TechRep2_CNhs14376_tpm_rev Cl:Mero-14Tr2- bigWig mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse 1 1314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep2.CNhs14376.10849-111F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-14, tech_rep2_CNhs14376_10849-111F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-14Tr2-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero14TechRep2_CNhs14376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF093QLM ENCSR000EWL Signal bigWig K562 E2F4 ENCSR000EWL signal 2 1314 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/cf5dec88-9438-4433-82b0-720871835076/ENCFF093QLM.bigWig\ color 254,75,173\ longLabel K562 E2F4 ENCSR000EWL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWL Signal\ track wgEncodeReg4TfChip_ENCFF093QLM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF726GTH ENCSR120MOY Signal bigWig Sciatic nerve tissue male adult 26 years ATAC signal 2 1314 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/eaf2086b-62fe-44af-8558-8fc93fa04877/ENCFF726GTH.bigWig\ color 2,199,185\ longLabel Sciatic nerve tissue male adult 26 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120MOY Signal\ track wgEncodeReg4Epigenetics_ENCFF726GTH\ type bigWig\ visibility full\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_fwd Cl:NCI-H1385+ bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward 0 1315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H1385+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_fwd Cl:NCI-H1385+ bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward 1 1315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H1385+\ subGroups sequenceTech=LQhCAGE category=cellLine strand=forward\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF876GFS ENCSR000EWM Peak bigBed 5 K562 GATA1 peaks 4 1315 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/2f2b757a-fcea-4e01-93e0-a75510963d38/ENCFF876GFS.bigBed\ labelFields none\ longLabel K562 GATA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF876GFS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF423DAA ENCSR120WKZ Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak 4 1315 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/c3fa5888-5dae-400c-842a-d19fb7a48228/ENCFF423DAA.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120WKZ Peak\ track wgEncodeReg4Epigenetics_ENCFF423DAA\ type bigBed 5\ visibility squish\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_rev Cl:NCI-H1385- bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse 0 1316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H1385-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_rev Cl:NCI-H1385- bigWig non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse 1 1316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non-small%20cell%20lung%20cancer%20cell%20line%3aNCI-H1385.CNhs12193.10730-110B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel non-small cell lung cancer cell line:NCI-H1385_CNhs12193_10730-110B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10730-110B1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H1385-\ subGroups sequenceTech=LQhCAGE category=cellLine strand=reverse\ track NonsmallCellLungCancerCellLineNCIH1385_CNhs12193_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10730-110B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF240CAC ENCSR000EWM Signal bigWig K562 GATA1 ENCSR000EWM signal 2 1316 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/ddf06991-d868-4d50-a445-58fc6868b923/ENCFF240CAC.bigWig\ color 254,75,173\ longLabel K562 GATA1 ENCSR000EWM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWM Signal\ track wgEncodeReg4TfChip_ENCFF240CAC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF599VAD ENCSR120WKZ Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal 2 1316 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/1bda0f70-03ac-4989-ae1b-1791c7c9c3f5/ENCFF599VAD.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120WKZ Signal\ track wgEncodeReg4Epigenetics_ENCFF599VAD\ type bigWig\ visibility full\ LeiomyomaCellLine10964C_CNhs11722_ctss_fwd Cl:10964C+ bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_forward 0 1317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:10964C_CNhs11722_10569-108B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10569-108B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:10964C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine10964C_CNhs11722_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine10964C_CNhs11722_tpm_fwd Cl:10964C+ bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_forward 1 1317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:10964C_CNhs11722_10569-108B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10569-108B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:10964C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine10964C_CNhs11722_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF650LPZ ENCSR000EWN Peak bigBed 5 K562 ZNF263 peaks 4 1317 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/18d75f08-5d88-4854-8d98-1b9bdcd8cd64/ENCFF650LPZ.bigBed\ labelFields none\ longLabel K562 ZNF263 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF650LPZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF782NIM ENCSR120ZZJ Peak bigBed 5 Placenta tissue embryo 16 weeks H3K4me3 peak 4 1317 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/35e6a7e4-cb7c-424b-a042-b56d1b5daf6c/ENCFF782NIM.bigBed\ color 255,0,0\ longLabel Placenta tissue embryo 16 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120ZZJ Peak\ track wgEncodeReg4Epigenetics_ENCFF782NIM\ type bigBed 5\ visibility squish\ LeiomyomaCellLine10964C_CNhs11722_ctss_rev Cl:10964C- bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse 0 1318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10569-108B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:10964C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine10964C_CNhs11722_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine10964C_CNhs11722_tpm_rev Cl:10964C- bigWig leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse 1 1318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a10964C.CNhs11722.10569-108B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:10964C_CNhs11722_10569-108B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10569-108B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:10964C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine10964C_CNhs11722_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10569-108B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF552HMM ENCSR000EWN Signal bigWig K562 ZNF263 ENCSR000EWN signal 2 1318 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/851a6437-6e97-4980-b7ac-0e1dc46132e4/ENCFF552HMM.bigWig\ color 254,75,173\ longLabel K562 ZNF263 ENCSR000EWN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWN Signal\ track wgEncodeReg4TfChip_ENCFF552HMM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF954NRC ENCSR120ZZJ Signal bigWig Placenta tissue embryo 16 weeks H3K4me3 signal 2 1318 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/60243885-8f8c-483c-9615-f19061ab537d/ENCFF954NRC.bigWig\ color 255,0,0\ longLabel Placenta tissue embryo 16 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR120ZZJ Signal\ track wgEncodeReg4Epigenetics_ENCFF954NRC\ type bigWig\ visibility full\ OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_fwd Cl:143B/TK^(-)neo^(R)+ bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward 0 1319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:143B/TK^(-)neo^(R)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_fwd Cl:143B/TK^(-)neo^(R)+ bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward 1 1319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:143B/TK^(-)neo^(R)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF178GBS ENCSR000EWS Peak bigBed 5 MCF-7 GATA3 peaks 4 1319 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/8a3579dd-036f-4408-965f-81322e9cfa16/ENCFF178GBS.bigBed\ labelFields none\ longLabel MCF-7 GATA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF178GBS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF185JEY ENCSR121GEL Peak bigBed 5 K562 treated with 1 μM Crizotinib for 12 hours ATAC peak 4 1319 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/20063590-c78c-4468-b0e7-7947277b2b91/ENCFF185JEY.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 12 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR121GEL Peak\ track wgEncodeReg4Epigenetics_ENCFF185JEY\ type bigBed 5\ visibility squish\ OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_rev Cl:143B/TK^(-)neo^(R)- bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse 0 1320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:143B/TK^(-)neo^(R)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_rev Cl:143B/TK^(-)neo^(R)- bigWig osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse 1 1320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3a143B%20TK%5e%28-%29neo%5e%28R%29.CNhs11279.10510-107D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel osteosarcoma cell line:143B/TK^(-)neo^(R)_CNhs11279_10510-107D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10510-107D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:143B/TK^(-)neo^(R)-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteosarcomaCellLine143BTKneoR_CNhs11279_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10510-107D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF794AFQ ENCSR000EWS Signal bigWig MCF-7 GATA3 ENCSR000EWS signal 2 1320 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/b6a92a43-54c8-48fe-b658-6624cc5cba04/ENCFF794AFQ.bigWig\ color 65,171,173\ longLabel MCF-7 GATA3 ENCSR000EWS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWS Signal\ track wgEncodeReg4TfChip_ENCFF794AFQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF488VIA ENCSR121GEL Signal bigWig K562 treated with 1 μM Crizotinib for 12 hours ATAC signal 2 1320 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/d621f6bd-f91f-47c0-90b6-91f4944ca55e/ENCFF488VIA.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 12 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR121GEL Signal\ track wgEncodeReg4Epigenetics_ENCFF488VIA\ type bigWig\ visibility full\ LeiomyomaCellLine15242A_CNhs11723_ctss_fwd Cl:15242A+ bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward 0 1321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15242A+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15242A_CNhs11723_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15242A_CNhs11723_tpm_fwd Cl:15242A+ bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward 1 1321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15242A+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15242A_CNhs11723_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF219LIX ENCSR000EWT Peak bigBed 5 MCF-7 TCF7L2 peaks 4 1321 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/d776f382-0b05-45f0-a3a9-004f14f14574/ENCFF219LIX.bigBed\ labelFields none\ longLabel MCF-7 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF219LIX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF672HZL ENCSR121ZSL Peak bigBed 5 Trophoblast cell embryo 21 weeks DNase peak 4 1321 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/81661aa7-6da4-4174-a7a6-b748631471f0/ENCFF672HZL.bigBed\ color 6,218,147\ labelFields none\ longLabel Trophoblast cell embryo 21 weeks DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR121ZSL Peak\ track wgEncodeReg4Epigenetics_ENCFF672HZL\ type bigBed 5\ visibility squish\ LeiomyomaCellLine15242A_CNhs11723_ctss_rev Cl:15242A- bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse 0 1322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15242A-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15242A_CNhs11723_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15242A_CNhs11723_tpm_rev Cl:15242A- bigWig leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse 1 1322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15242A.CNhs11723.10570-108B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15242A_CNhs11723_10570-108B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10570-108B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15242A-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15242A_CNhs11723_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10570-108B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF536HFB ENCSR000EWT Signal bigWig MCF-7 TCF7L2 ENCSR000EWT signal 2 1322 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/16e97d9a-9d44-47fb-ac2d-4a26408edadd/ENCFF536HFB.bigWig\ color 65,171,173\ longLabel MCF-7 TCF7L2 ENCSR000EWT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWT Signal\ track wgEncodeReg4TfChip_ENCFF536HFB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF962MQB ENCSR121ZSL Signal bigWig Trophoblast cell embryo 21 weeks DNase signal 2 1322 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/cb821395-fc2b-4ce2-9563-4c980362eedd/ENCFF962MQB.bigWig\ color 6,218,147\ longLabel Trophoblast cell embryo 21 weeks DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR121ZSL Signal\ track wgEncodeReg4Epigenetics_ENCFF962MQB\ type bigWig\ visibility full\ LeiomyomaCellLine15425_CNhs11724_ctss_fwd Cl:15425+ bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_forward 0 1323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15425+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15425_CNhs11724_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15425_CNhs11724_tpm_fwd Cl:15425+ bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_forward 1 1323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15425+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyomaCellLine15425_CNhs11724_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF299BWK ENCSR000EWU Peak bigBed 5 MCF-7 ZNF217 peaks 4 1323 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/fd6dc9f4-0b93-4c66-8309-f2b76108d7cd/ENCFF299BWK.bigBed\ labelFields none\ longLabel MCF-7 ZNF217 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF299BWK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF115PXH ENCSR122IJJ Peak bigBed 5 Foreskin fibroblast male newborn H3K4me3 peak 4 1323 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/bec27662-dc2b-4074-8b38-28f3347baf6d/ENCFF115PXH.bigBed\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122IJJ Peak\ track wgEncodeReg4Epigenetics_ENCFF115PXH\ type bigBed 5\ visibility squish\ LeiomyomaCellLine15425_CNhs11724_ctss_rev Cl:15425- bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse 0 1324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:15425-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15425_CNhs11724_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ LeiomyomaCellLine15425_CNhs11724_tpm_rev Cl:15425- bigWig leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse 1 1324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoma%20cell%20line%3a15425.CNhs11724.10571-108B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoma cell line:15425_CNhs11724_10571-108B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10571-108B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:15425-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyomaCellLine15425_CNhs11724_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10571-108B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF690HUD ENCSR000EWU Signal bigWig MCF-7 ZNF217 ENCSR000EWU signal 2 1324 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/321562e9-61e9-4de5-8db7-ce73221cf0d1/ENCFF690HUD.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF217 ENCSR000EWU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWU Signal\ track wgEncodeReg4TfChip_ENCFF690HUD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF908RLV ENCSR122IJJ Signal bigWig Foreskin fibroblast male newborn H3K4me3 signal 2 1324 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/76bd22be-03e3-406c-84f0-943f80914323/ENCFF908RLV.bigWig\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122IJJ Signal\ track wgEncodeReg4Epigenetics_ENCFF908RLV\ type bigWig\ visibility full\ EmbryonicPancreasCellLine1B2C6_CNhs11731_ctss_fwd Cl:1B2C6+ bigWig embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_forward 0 1325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1B2C6.CNhs11731.10604-108F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10604-108F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1B2C6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1B2C6_CNhs11731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1B2C6_CNhs11731_tpm_fwd Cl:1B2C6+ bigWig embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_forward 1 1325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1B2C6.CNhs11731.10604-108F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10604-108F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1B2C6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1B2C6_CNhs11731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF695MAU ENCSR000EWV Peak bigBed 5 MCF-7 GATA3 peaks 4 1325 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d884c84a-5847-4a32-8dfb-d621dc269306/ENCFF695MAU.bigBed\ labelFields none\ longLabel MCF-7 GATA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF695MAU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF511MCV ENCSR122LOZ Peak bigBed 5 Ascending aorta tissue female adult 53 years H3K4me3 peak 4 1325 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/425eac41-318d-4a93-ba48-0da6cb5ed1d5/ENCFF511MCV.bigBed\ color 255,0,0\ longLabel Ascending aorta tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122LOZ Peak\ track wgEncodeReg4Epigenetics_ENCFF511MCV\ type bigBed 5\ visibility squish\ EmbryonicPancreasCellLine1B2C6_CNhs11731_ctss_rev Cl:1B2C6- bigWig embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_reverse 0 1326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1B2C6.CNhs11731.10604-108F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10604-108F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1B2C6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1B2C6_CNhs11731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1B2C6_CNhs11731_tpm_rev Cl:1B2C6- bigWig embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_reverse 1 1326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1B2C6.CNhs11731.10604-108F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1B2C6_CNhs11731_10604-108F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10604-108F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1B2C6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1B2C6_CNhs11731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10604-108F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF087MTQ ENCSR000EWV Signal bigWig MCF-7 GATA3 ENCSR000EWV signal 2 1326 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/af8363c4-d175-4c42-8d97-cd46bbf994be/ENCFF087MTQ.bigWig\ color 65,171,173\ longLabel MCF-7 GATA3 ENCSR000EWV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWV Signal\ track wgEncodeReg4TfChip_ENCFF087MTQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF132YWJ ENCSR122LOZ Signal bigWig Ascending aorta tissue female adult 53 years H3K4me3 signal 2 1326 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d555a7e8-583c-4ebb-9e6c-aef9c2e97b35/ENCFF132YWJ.bigWig\ color 255,0,0\ longLabel Ascending aorta tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122LOZ Signal\ track wgEncodeReg4Epigenetics_ENCFF132YWJ\ type bigWig\ visibility full\ EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_fwd Cl:1C3D3+ bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward 0 1327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3D3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_fwd Cl:1C3D3+ bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward 1 1327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3D3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF692OYJ ENCSR000EWX Peak bigBed 5 MCF-7 stably expressing E2F1 E2F1 peaks 4 1327 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/a1cbb3ea-01a1-41b7-ba1c-fe92699357a5/ENCFF692OYJ.bigBed\ labelFields none\ longLabel MCF-7 stably expressing E2F1 E2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF692OYJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF168MSK ENCSR122MPC Peak bigBed 5 Spleen tissue female adult 59 years H3K4me3 peak 4 1327 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/f06f40a1-d69c-4e6c-8271-e38d1301b979/ENCFF168MSK.bigBed\ color 255,0,0\ longLabel Spleen tissue female adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122MPC Peak\ track wgEncodeReg4Epigenetics_ENCFF168MSK\ type bigBed 5\ visibility squish\ EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_rev Cl:1C3D3- bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse 0 1328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3D3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_rev Cl:1C3D3- bigWig embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse 1 1328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3D3.CNhs11732.10605-108F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3D3_CNhs11732_10605-108F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10605-108F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3D3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3D3_CNhs11732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10605-108F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF858GLM ENCSR000EWX Signal bigWig MCF-7 stably expressing E2F1 E2F1 ENCSR000EWX signal 2 1328 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3879441d-dc9f-4742-88ff-5970e61187ca/ENCFF858GLM.bigWig\ color 65,171,173\ longLabel MCF-7 stably expressing E2F1 E2F1 ENCSR000EWX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWX Signal\ track wgEncodeReg4TfChip_ENCFF858GLM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF842QQE ENCSR122MPC Signal bigWig Spleen tissue female adult 59 years H3K4me3 signal 2 1328 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/485b7391-9d42-4dee-bdd8-d1dc875f40cb/ENCFF842QQE.bigWig\ color 255,0,0\ longLabel Spleen tissue female adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122MPC Signal\ track wgEncodeReg4Epigenetics_ENCFF842QQE\ type bigWig\ visibility full\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_fwd Cl:1C3IKEI+ bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward 0 1329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3IKEI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_fwd Cl:1C3IKEI+ bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward 1 1329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3IKEI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF960BHH ENCSR000EWY Peak bigBed 5 NT2/D1 ZNF274 peaks 4 1329 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/6a2cb39d-260a-48b5-b4f3-30506d4ec019/ENCFF960BHH.bigBed\ labelFields none\ longLabel NT2/D1 ZNF274 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF960BHH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF621VGP ENCSR122NDR Signal bigWig GM21576 ATAC signal 2 1329 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/016b2153-066a-4be0-8530-62a9ef50a135/ENCFF621VGP.bigWig\ color 2,199,185\ longLabel GM21576 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122NDR Signal\ track wgEncodeReg4Epigenetics_ENCFF621VGP\ type bigWig\ visibility full\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_rev Cl:1C3IKEI- bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse 0 1330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:1C3IKEI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_rev Cl:1C3IKEI- bigWig embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse 1 1330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a1C3IKEI.CNhs11733.10606-108F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:1C3IKEI_CNhs11733_10606-108F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10606-108F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:1C3IKEI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine1C3IKEI_CNhs11733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10606-108F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF171UHW ENCSR000EWY Signal bigWig NT2/D1 ZNF274 ENCSR000EWY signal 2 1330 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/1e9504a8-7236-41b7-936f-87bfa6a3cec0/ENCFF171UHW.bigWig\ color 139,140,140\ longLabel NT2/D1 ZNF274 ENCSR000EWY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EWY Signal\ track wgEncodeReg4TfChip_ENCFF171UHW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF088LDH ENCSR122NRV Peak bigBed 5 Head of caudate nucleus tissue female adult 78 years DNase peak 4 1330 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/28a86be6-51cd-4799-befd-ed8c4a3bd292/ENCFF088LDH.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122NRV Peak\ track wgEncodeReg4Epigenetics_ENCFF088LDH\ type bigBed 5\ visibility squish\ EmbryonicPancreasCellLine2C6_CNhs11814_ctss_fwd Cl:2C6+ bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward 0 1331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:2C6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine2C6_CNhs11814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine2C6_CNhs11814_tpm_fwd Cl:2C6+ bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward 1 1331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:2C6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicPancreasCellLine2C6_CNhs11814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF999MII ENCSR000EXG Peak bigBed 5 NT2/D1 YY1 peaks 4 1331 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/3de8efe8-1536-4d41-bfdf-49a469e8d8e5/ENCFF999MII.bigBed\ labelFields none\ longLabel NT2/D1 YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF999MII\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF436OUJ ENCSR122NRV Signal bigWig Head of caudate nucleus tissue female adult 78 years DNase signal 2 1331 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/cdc15eaa-ca46-4811-98c4-58f0568a96a7/ENCFF436OUJ.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122NRV Signal\ track wgEncodeReg4Epigenetics_ENCFF436OUJ\ type bigWig\ visibility full\ EmbryonicPancreasCellLine2C6_CNhs11814_ctss_rev Cl:2C6- bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse 0 1332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:2C6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine2C6_CNhs11814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ EmbryonicPancreasCellLine2C6_CNhs11814_tpm_rev Cl:2C6- bigWig embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse 1 1332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20pancreas%20cell%20line%3a2C6.CNhs11814.10603-108E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel embryonic pancreas cell line:2C6_CNhs11814_10603-108E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10603-108E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:2C6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicPancreasCellLine2C6_CNhs11814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10603-108E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF682QWZ ENCSR000EXG Signal bigWig NT2/D1 YY1 ENCSR000EXG signal 2 1332 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8a4d0133-d4af-4612-b544-9b1327df2eae/ENCFF682QWZ.bigWig\ color 139,140,140\ longLabel NT2/D1 YY1 ENCSR000EXG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXG Signal\ track wgEncodeReg4TfChip_ENCFF682QWZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF308VSB ENCSR122VUW Peak bigBed 5 Common myeloid progenitor, CD34-positive female adult 27 years DNase peak 4 1332 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/1471b390-8aad-4ffd-8b18-6803d44934b4/ENCFF308VSB.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive female adult 27 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122VUW Peak\ track wgEncodeReg4Epigenetics_ENCFF308VSB\ type bigBed 5\ visibility squish\ TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_fwd Cl:5637+ bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward 0 1333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:5637+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_fwd Cl:5637+ bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward 1 1333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:5637+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF574SXS ENCSR000EXH Peak bigBed 5 NT2/D1 SUZ12 peaks 4 1333 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/5c58c790-fc9f-4b64-91e5-f758a5579b84/ENCFF574SXS.bigBed\ labelFields none\ longLabel NT2/D1 SUZ12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF574SXS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF861NNR ENCSR122VUW Signal bigWig Common myeloid progenitor, CD34-positive female adult 27 years DNase signal 2 1333 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/d5eedcc6-d063-46c6-8944-7c066ced5874/ENCFF861NNR.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive female adult 27 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR122VUW Signal\ track wgEncodeReg4Epigenetics_ENCFF861NNR\ type bigWig\ visibility full\ TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_rev Cl:5637- bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse 0 1334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:5637-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_rev Cl:5637- bigWig transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse 1 1334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional-cell%20carcinoma%20cell%20line%3a5637.CNhs10735.10418-106C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel transitional-cell carcinoma cell line:5637_CNhs10735_10418-106C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10418-106C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:5637-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalcellCarcinomaCellLine5637_CNhs10735_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10418-106C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF121CEN ENCSR000EXH Signal bigWig NT2/D1 SUZ12 ENCSR000EXH signal 2 1334 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/452ebf8c-51b0-409f-b269-eabb02717d92/ENCFF121CEN.bigWig\ color 139,140,140\ longLabel NT2/D1 SUZ12 ENCSR000EXH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXH Signal\ track wgEncodeReg4TfChip_ENCFF121CEN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF951GFL ENCSR123HEE Peak bigBed 5 Layer of hippocampus tissue female adult 75 years H3K27ac peak 4 1334 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2e84ffc6-c417-476c-b8af-e77f0711b1b8/ENCFF951GFL.bigBed\ color 181,145,0\ longLabel Layer of hippocampus tissue female adult 75 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123HEE Peak\ track wgEncodeReg4Epigenetics_ENCFF951GFL\ type bigBed 5\ visibility squish\ AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_fwd Cl:8305C+ bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward 0 1335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8305C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_fwd Cl:8305C+ bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward 1 1335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8305C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF829HHL ENCSR000EXL Peak bigBed 5 Panc1 TCF7L2 peaks 4 1335 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/010ebeeb-2390-4e74-b604-4bc538fd17d3/ENCFF829HHL.bigBed\ labelFields none\ longLabel Panc1 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF829HHL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF955MQX ENCSR123HEE Signal bigWig Layer of hippocampus tissue female adult 75 years H3K27ac signal 2 1335 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8cadb374-1952-4ba9-9131-231ea08b8779/ENCFF955MQX.bigWig\ color 181,145,0\ longLabel Layer of hippocampus tissue female adult 75 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123HEE Signal\ track wgEncodeReg4Epigenetics_ENCFF955MQX\ type bigWig\ visibility full\ AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_rev Cl:8305C- bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse 0 1336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8305C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_rev Cl:8305C- bigWig anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse 1 1336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20carcinoma%20cell%20line%3a8305C.CNhs10745.10428-106D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel anaplastic carcinoma cell line:8305C_CNhs10745_10428-106D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10428-106D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8305C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticCarcinomaCellLine8305C_CNhs10745_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10428-106D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF990XEY ENCSR000EXL Signal bigWig Panc1 TCF7L2 ENCSR000EXL signal 2 1336 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/2b1e96e9-3267-4498-bd4f-07290b3d50f9/ENCFF990XEY.bigWig\ color 175,100,41\ longLabel Panc1 TCF7L2 ENCSR000EXL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXL Signal\ track wgEncodeReg4TfChip_ENCFF990XEY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF610SNJ ENCSR123OMJ Peak bigBed 5 Heart left ventricle tissue male adult 66 years H3K4me3 peak 4 1336 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/4f4053be-8ca1-49b8-a480-4b1153ad026e/ENCFF610SNJ.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 66 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123OMJ Peak\ track wgEncodeReg4Epigenetics_ENCFF610SNJ\ type bigBed 5\ visibility squish\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_fwd Cl:8505C+ bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward 0 1337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8505C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_fwd Cl:8505C+ bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward 1 1337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8505C+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF498VMR ENCSR000EXO Peak bigBed 5 Erythroblast male POLR2A peaks 4 1337 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/4a2207e6-efca-439c-9147-2d87f62b7910/ENCFF498VMR.bigBed\ labelFields none\ longLabel Erythroblast male POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF498VMR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF688GJM ENCSR123OMJ Signal bigWig Heart left ventricle tissue male adult 66 years H3K4me3 signal 2 1337 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/523a2aba-590e-44b9-ae46-ed6e36909399/ENCFF688GJM.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 66 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123OMJ Signal\ track wgEncodeReg4Epigenetics_ENCFF688GJM\ type bigWig\ visibility full\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_rev Cl:8505C- bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse 0 1338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:8505C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_rev Cl:8505C- bigWig papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse 1 1338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillary%20adenocarcinoma%20cell%20line%3a8505C.CNhs11716.10437-106E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel papillary adenocarcinoma cell line:8505C_CNhs11716_10437-106E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10437-106E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:8505C-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PapillaryAdenocarcinomaCellLine8505C_CNhs11716_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10437-106E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF622QTN ENCSR000EXO Signal bigWig Erythroblast male POLR2A ENCSR000EXO signal 2 1338 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/bcf10ea8-b219-4c0c-88ea-e7e9313c2ac9/ENCFF622QTN.bigWig\ color 2,199,185\ longLabel Erythroblast male POLR2A ENCSR000EXO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXO Signal\ track wgEncodeReg4TfChip_ENCFF622QTN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF939YQP ENCSR123WME Peak bigBed 5 HG02943 ATAC peak 4 1338 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/c536187c-92c1-49b0-b17a-b2264b2ebe26/ENCFF939YQP.bigBed\ color 2,199,185\ longLabel HG02943 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123WME Peak\ track wgEncodeReg4Epigenetics_ENCFF939YQP\ type bigBed 5\ visibility squish\ GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_fwd Cl:A172Tr2+ bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward 0 1339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A172Tr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_fwd Cl:A172Tr2+ bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward 1 1339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A172Tr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF867JAR ENCSR000EXP Peak bigBed 5 Erythroblast male GATA1 peaks 4 1339 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/ce5904f0-b159-44d5-b13d-0e5431cd632a/ENCFF867JAR.bigBed\ labelFields none\ longLabel Erythroblast male GATA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF867JAR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF485EKM ENCSR123WME Signal bigWig HG02943 ATAC signal 2 1339 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/39c84153-e133-4789-8a38-715e57e79b9a/ENCFF485EKM.bigWig\ color 2,199,185\ longLabel HG02943 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123WME Signal\ track wgEncodeReg4Epigenetics_ENCFF485EKM\ type bigWig\ visibility full\ GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_rev Cl:A172Tr2- bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse 0 1340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A172Tr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineA172TechRep2_CNhs11248_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_rev Cl:A172Tr2- bigWig glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse 1 1340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aA172%2c%20tech_rep2.CNhs11248.10444-106F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:A172, tech_rep2_CNhs11248_10444-106F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10444-106F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A172Tr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineA172TechRep2_CNhs11248_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10444-106F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF462TRI ENCSR000EXP Signal bigWig Erythroblast male GATA1 ENCSR000EXP signal 2 1340 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/d5ba4b19-6717-466a-8c0f-7bfd7cc13e4a/ENCFF462TRI.bigWig\ color 2,199,185\ longLabel Erythroblast male GATA1 ENCSR000EXP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXP Signal\ track wgEncodeReg4TfChip_ENCFF462TRI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF764DVS ENCSR123ZAT Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 1340 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/828ffd33-ef9a-4680-9b23-51a7a26e0c27/ENCFF764DVS.bigBed\ color 255,0,0\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123ZAT Peak\ track wgEncodeReg4Epigenetics_ENCFF764DVS\ type bigBed 5\ visibility squish\ EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_fwd Cl:A431+ bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward 0 1341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A431+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_fwd Cl:A431+ bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward 1 1341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A431+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF125LDD ENCSR000EXR Peak bigBed 5 Erythroblast embryo (16-19 weeks) GATA1 peaks 4 1341 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/faf14d2c-7491-48dc-a0b5-5ea91f235341/ENCFF125LDD.bigBed\ labelFields none\ longLabel Erythroblast embryo (16-19 weeks) GATA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF125LDD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF417TJV ENCSR123ZAT Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 1341 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/91197ef7-28f7-4b27-9e8b-329a31e577fe/ENCFF417TJV.bigWig\ color 255,0,0\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR123ZAT Signal\ track wgEncodeReg4Epigenetics_ENCFF417TJV\ type bigWig\ visibility full\ EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_rev Cl:A431- bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse 0 1342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A431-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineA431_CNhs10743_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_rev Cl:A431- bigWig epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse 1 1342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aA431.CNhs10743.10426-106D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:A431_CNhs10743_10426-106D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10426-106D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A431-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineA431_CNhs10743_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10426-106D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF793YCK ENCSR000EXR Signal bigWig Erythroblast embryo (16-19 weeks) GATA1 ENCSR000EXR signal 2 1342 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/5afa8c9f-b324-4b34-8d19-987d00615b85/ENCFF793YCK.bigWig\ color 2,199,185\ longLabel Erythroblast embryo (16-19 weeks) GATA1 ENCSR000EXR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXR Signal\ track wgEncodeReg4TfChip_ENCFF793YCK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF411MPQ ENCSR124IMM Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak 4 1342 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/1a538b15-127e-42d4-b5ae-2191d378378b/ENCFF411MPQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR124IMM Peak\ track wgEncodeReg4Epigenetics_ENCFF411MPQ\ type bigBed 5\ visibility squish\ LungAdenocarcinomaCellLineA549_CNhs11275_ctss_fwd Cl:A549+ bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward 0 1343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A549+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaCellLineA549_CNhs11275_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaCellLineA549_CNhs11275_tpm_fwd Cl:A549+ bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward 1 1343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A549+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaCellLineA549_CNhs11275_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF613VGX ENCSR000EXX Peak bigBed 5 Raji POLR2A peaks 4 1343 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/d05b0373-ce45-47f7-b8a3-285ac7eaf516/ENCFF613VGX.bigBed\ labelFields none\ longLabel Raji POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF613VGX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF767BTZ ENCSR124IMM Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal 2 1343 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/07914e67-8f7b-439b-9131-9588611a07ad/ENCFF767BTZ.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR124IMM Signal\ track wgEncodeReg4Epigenetics_ENCFF767BTZ\ type bigWig\ visibility full\ LungAdenocarcinomaCellLineA549_CNhs11275_ctss_rev Cl:A549- bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse 0 1344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:A549-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaCellLineA549_CNhs11275_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaCellLineA549_CNhs11275_tpm_rev Cl:A549- bigWig lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse 1 1344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aA549.CNhs11275.10499-107C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma cell line:A549_CNhs11275_10499-107C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10499-107C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:A549-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaCellLineA549_CNhs11275_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10499-107C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF709UFM ENCSR000EXX Signal bigWig Raji POLR2A ENCSR000EXX signal 2 1344 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/f11a538f-0e68-4881-84e7-a3509abccfa0/ENCFF709UFM.bigWig\ color 6,218,147\ longLabel Raji POLR2A ENCSR000EXX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXX Signal\ track wgEncodeReg4TfChip_ENCFF709UFM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF459UUF ENCSR124PXN Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak 4 1344 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a63e7210-00bd-46a3-8391-8395da625494/ENCFF459UUF.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR124PXN Peak\ track wgEncodeReg4Epigenetics_ENCFF459UUF\ type bigBed 5\ visibility squish\ MesotheliomaCellLineACCMESO1_CNhs11263_ctss_fwd Cl:ACC-MESO-1+ bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward 0 1345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO1_CNhs11263_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO1_CNhs11263_tpm_fwd Cl:ACC-MESO-1+ bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward 1 1345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO1_CNhs11263_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF475HYF ENCSR000EXZ Peak bigBed 5 SH-SY5Y GATA3 peaks 4 1345 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/a534cd26-ca67-4b46-8dae-094a1fa41a47/ENCFF475HYF.bigBed\ labelFields none\ longLabel SH-SY5Y GATA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF475HYF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF196VNL ENCSR124PXN Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal 2 1345 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8cca290f-7c56-493f-8e40-97e0f4aad9d0/ENCFF196VNL.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR124PXN Signal\ track wgEncodeReg4Epigenetics_ENCFF196VNL\ type bigWig\ visibility full\ MesotheliomaCellLineACCMESO1_CNhs11263_ctss_rev Cl:ACC-MESO-1- bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse 0 1346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO1_CNhs11263_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO1_CNhs11263_tpm_rev Cl:ACC-MESO-1- bigWig mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse 1 1346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-1.CNhs11263.10493-107B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-1_CNhs11263_10493-107B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10493-107B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO1_CNhs11263_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10493-107B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF062MFF ENCSR000EXZ Signal bigWig SH-SY5Y GATA3 ENCSR000EXZ signal 2 1346 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/a3abdc35-0c55-4967-9f7f-8a63818b7dd2/ENCFF062MFF.bigWig\ color 2,199,185\ longLabel SH-SY5Y GATA3 ENCSR000EXZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EXZ Signal\ track wgEncodeReg4TfChip_ENCFF062MFF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF460BWT ENCSR124VOE Peak bigBed 5 Neural cell originated from H1 H3K27ac peak 4 1346 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/7f5d11e5-cf40-4407-886f-032500b03eb8/ENCFF460BWT.bigBed\ color 181,145,0\ longLabel Neural cell originated from H1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR124VOE Peak\ track wgEncodeReg4Epigenetics_ENCFF460BWT\ type bigBed 5\ visibility squish\ MesotheliomaCellLineACCMESO4_CNhs11264_ctss_fwd Cl:ACC-MESO-4+ bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward 0 1347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO4_CNhs11264_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO4_CNhs11264_tpm_fwd Cl:ACC-MESO-4+ bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward 1 1347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineACCMESO4_CNhs11264_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF485YIB ENCSR000EYB Peak bigBed 5 SH-SY5Y GATA2 peaks 4 1347 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/cb1b0eac-6a9e-43af-9eb2-4162637a4829/ENCFF485YIB.bigBed\ labelFields none\ longLabel SH-SY5Y GATA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EYB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF485YIB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF192ADT ENCSR124VOE Signal bigWig Neural cell originated from H1 H3K27ac signal 2 1347 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/93cbab33-2fc9-4820-9965-864d9b62eece/ENCFF192ADT.bigWig\ color 181,145,0\ longLabel Neural cell originated from H1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR124VOE Signal\ track wgEncodeReg4Epigenetics_ENCFF192ADT\ type bigWig\ visibility full\ MesotheliomaCellLineACCMESO4_CNhs11264_ctss_rev Cl:ACC-MESO-4- bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse 0 1348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ACC-MESO-4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO4_CNhs11264_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineACCMESO4_CNhs11264_tpm_rev Cl:ACC-MESO-4- bigWig mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse 1 1348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aACC-MESO-4.CNhs11264.10494-107B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ACC-MESO-4_CNhs11264_10494-107B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10494-107B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ACC-MESO-4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineACCMESO4_CNhs11264_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10494-107B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF752HVO ENCSR000EYB Signal bigWig SH-SY5Y GATA2 ENCSR000EYB signal 2 1348 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/147cd8ad-c33b-48ce-828f-6fe78b7d7fe6/ENCFF752HVO.bigWig\ color 2,199,185\ longLabel SH-SY5Y GATA2 ENCSR000EYB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EYB Signal\ track wgEncodeReg4TfChip_ENCFF752HVO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF116KKR ENCSR125DKL Peak bigBed 5 SU-DHL-6 CTCF peak 4 1348 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9d05bfee-dc5d-4b8f-8be2-c23230456411/ENCFF116KKR.bigBed\ color 0,176,240\ labelFields none\ longLabel SU-DHL-6 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR125DKL Peak\ track wgEncodeReg4Epigenetics_ENCFF116KKR\ type bigBed 5\ visibility squish\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_fwd Cl:ARH-77+ bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward 0 1349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ARH-77+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_fwd Cl:ARH-77+ bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward 1 1349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ARH-77+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF384XFV ENCSR000EYV Peak bigBed 5 GM12878 JUND peaks 4 1349 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/281af9e6-8d22-4a29-966b-c9140305e37d/ENCFF384XFV.bigBed\ labelFields none\ longLabel GM12878 JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EYV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF384XFV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF350HLL ENCSR125DKL Signal bigWig SU-DHL-6 CTCF signal 2 1349 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/54c5494f-2671-40e2-be92-cebf322ebf87/ENCFF350HLL.bigWig\ color 0,176,240\ longLabel SU-DHL-6 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR125DKL Signal\ track wgEncodeReg4Epigenetics_ENCFF350HLL\ type bigWig\ visibility full\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_rev Cl:ARH-77- bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse 0 1350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ARH-77-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_rev Cl:ARH-77- bigWig plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse 1 1350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/plasma%20cell%20leukemia%20cell%20line%3aARH-77.CNhs12807.10840-111E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel plasma cell leukemia cell line:ARH-77_CNhs12807_10840-111E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10840-111E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ARH-77-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PlasmaCellLeukemiaCellLineARH77_CNhs12807_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10840-111E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF078RFY ENCSR000EYV Signal bigWig GM12878 JUND ENCSR000EYV signal 2 1350 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/25/8ba4d2bd-2810-42b1-914e-37f0bef12290/ENCFF078RFY.bigWig\ color 254,75,173\ longLabel GM12878 JUND ENCSR000EYV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EYV Signal\ track wgEncodeReg4TfChip_ENCFF078RFY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF420RBO ENCSR125NBL Peak bigBed 5 Neural progenitor cell originated from H9 CTCF peak 4 1350 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f6b58f15-6bad-4b0b-9855-28d35db58017/ENCFF420RBO.bigBed\ color 0,176,240\ labelFields none\ longLabel Neural progenitor cell originated from H9 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR125NBL Peak\ track wgEncodeReg4Epigenetics_ENCFF420RBO\ type bigBed 5\ visibility squish\ AdultTcellLeukemiaCellLineATN1_CNhs10738_ctss_fwd Cl:ATN-1+ bigWig adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_forward 0 1351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adult%20T-cell%20leukemia%20cell%20line%3aATN-1.CNhs10738.10421-106C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10421-106C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ATN-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AdultTcellLeukemiaCellLineATN1_CNhs10738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7\ urlLabel FANTOM5 Details:\ AdultTcellLeukemiaCellLineATN1_CNhs10738_tpm_fwd Cl:ATN-1+ bigWig adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_forward 1 1351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adult%20T-cell%20leukemia%20cell%20line%3aATN-1.CNhs10738.10421-106C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10421-106C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ATN-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AdultTcellLeukemiaCellLineATN1_CNhs10738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF157FTE ENCSR000EYZ Peak bigBed 5 GM12878 FOS peaks 4 1351 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/6606df49-b3bf-45c5-9b02-081204df5ecc/ENCFF157FTE.bigBed\ labelFields none\ longLabel GM12878 FOS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EYZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF157FTE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF700SCP ENCSR125NBL Signal bigWig Neural progenitor cell originated from H9 CTCF signal 2 1351 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/778b2402-98f2-4cf3-9f7d-53537562d5d2/ENCFF700SCP.bigWig\ color 0,176,240\ longLabel Neural progenitor cell originated from H9 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR125NBL Signal\ track wgEncodeReg4Epigenetics_ENCFF700SCP\ type bigWig\ visibility full\ AdultTcellLeukemiaCellLineATN1_CNhs10738_ctss_rev Cl:ATN-1- bigWig adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_reverse 0 1352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adult%20T-cell%20leukemia%20cell%20line%3aATN-1.CNhs10738.10421-106C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10421-106C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ATN-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AdultTcellLeukemiaCellLineATN1_CNhs10738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7\ urlLabel FANTOM5 Details:\ AdultTcellLeukemiaCellLineATN1_CNhs10738_tpm_rev Cl:ATN-1- bigWig adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_reverse 1 1352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adult%20T-cell%20leukemia%20cell%20line%3aATN-1.CNhs10738.10421-106C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adult T-cell leukemia cell line:ATN-1_CNhs10738_10421-106C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10421-106C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ATN-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AdultTcellLeukemiaCellLineATN1_CNhs10738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10421-106C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF503MRU ENCSR000EYZ Signal bigWig GM12878 FOS ENCSR000EYZ signal 2 1352 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/25416d22-0bac-4c7f-9f34-a699c5948954/ENCFF503MRU.bigWig\ color 254,75,173\ longLabel GM12878 FOS ENCSR000EYZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EYZ Signal\ track wgEncodeReg4TfChip_ENCFF503MRU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF537HTG ENCSR125OEJ Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years DNase signal 2 1352 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/35904433-3c0f-4347-a0f4-4df057816345/ENCFF537HTG.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR125OEJ Signal\ track wgEncodeReg4Epigenetics_ENCFF537HTG\ type bigWig\ visibility full\ GastricCancerCellLineAZ521_CNhs11286_ctss_fwd Cl:AZ521+ bigWig gastric cancer cell line:AZ521_CNhs11286_10549-107H9_forward 0 1353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aAZ521.CNhs11286.10549-107H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gastric cancer cell line:AZ521_CNhs11286_10549-107H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10549-107H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:AZ521+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricCancerCellLineAZ521_CNhs11286_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9\ urlLabel FANTOM5 Details:\ GastricCancerCellLineAZ521_CNhs11286_tpm_fwd Cl:AZ521+ bigWig gastric cancer cell line:AZ521_CNhs11286_10549-107H9_forward 1 1353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aAZ521.CNhs11286.10549-107H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gastric cancer cell line:AZ521_CNhs11286_10549-107H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10549-107H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:AZ521+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricCancerCellLineAZ521_CNhs11286_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF590FML ENCSR000EZC Peak bigBed 5 HeLa-S3 SMARCA4 peaks 4 1353 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/408c7abc-729f-4815-851b-68e513e09a90/ENCFF590FML.bigBed\ labelFields none\ longLabel HeLa-S3 SMARCA4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF590FML\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF108YIQ ENCSR126EVK Peak bigBed 5 Placenta tissue female embryo DNase peak 4 1353 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/05199756-da71-4091-9058-0906a908fbe6/ENCFF108YIQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR126EVK Peak\ track wgEncodeReg4Epigenetics_ENCFF108YIQ\ type bigBed 5\ visibility squish\ GastricCancerCellLineAZ521_CNhs11286_ctss_rev Cl:AZ521- bigWig gastric cancer cell line:AZ521_CNhs11286_10549-107H9_reverse 0 1354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aAZ521.CNhs11286.10549-107H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gastric cancer cell line:AZ521_CNhs11286_10549-107H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10549-107H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:AZ521-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricCancerCellLineAZ521_CNhs11286_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9\ urlLabel FANTOM5 Details:\ GastricCancerCellLineAZ521_CNhs11286_tpm_rev Cl:AZ521- bigWig gastric cancer cell line:AZ521_CNhs11286_10549-107H9_reverse 1 1354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aAZ521.CNhs11286.10549-107H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gastric cancer cell line:AZ521_CNhs11286_10549-107H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10549-107H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:AZ521-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricCancerCellLineAZ521_CNhs11286_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10549-107H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF120EJX ENCSR000EZC Signal bigWig HeLa-S3 SMARCA4 ENCSR000EZC signal 2 1354 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/afbcb3d0-b09e-41b2-bd53-de8d61f5b071/ENCFF120EJX.bigWig\ color 186,111,165\ longLabel HeLa-S3 SMARCA4 ENCSR000EZC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZC Signal\ track wgEncodeReg4TfChip_ENCFF120EJX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF405IWE ENCSR126EVK Signal bigWig Placenta tissue female embryo DNase signal 2 1354 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/175c8898-a058-4802-b042-5a815bf30fa0/ENCFF405IWE.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR126EVK Signal\ track wgEncodeReg4Epigenetics_ENCFF405IWE\ type bigWig\ visibility full\ AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_ctss_fwd Cl:BALL-1+ bigWig acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_forward 0 1355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aBALL-1.CNhs11251.10455-106G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10455-106G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:BALL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_tpm_fwd Cl:BALL-1+ bigWig acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_forward 1 1355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aBALL-1.CNhs11251.10455-106G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10455-106G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:BALL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF448AMU ENCSR000EZD Peak bigBed 5 HeLa-S3 MYC peaks 4 1355 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/25c1087f-d7a5-4eb7-9e79-3e234bf95d9c/ENCFF448AMU.bigBed\ labelFields none\ longLabel HeLa-S3 MYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF448AMU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF790UVS ENCSR126EVX Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 33 years DNase peak 4 1355 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/a0b3a548-ce1d-41c1-a3ed-df6b08a6ff65/ENCFF790UVS.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 33 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR126EVX Peak\ track wgEncodeReg4Epigenetics_ENCFF790UVS\ type bigBed 5\ visibility squish\ AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_ctss_rev Cl:BALL-1- bigWig acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_reverse 0 1356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aBALL-1.CNhs11251.10455-106G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10455-106G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:BALL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_tpm_rev Cl:BALL-1- bigWig acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_reverse 1 1356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aBALL-1.CNhs11251.10455-106G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:BALL-1_CNhs11251_10455-106G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10455-106G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:BALL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaBALLCellLineBALL1_CNhs11251_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10455-106G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF605QNJ ENCSR000EZD Signal bigWig HeLa-S3 MYC ENCSR000EZD signal 2 1356 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/f9fbddc7-33fc-4cf3-b07b-7b3fa1a52811/ENCFF605QNJ.bigWig\ color 186,111,165\ longLabel HeLa-S3 MYC ENCSR000EZD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZD Signal\ track wgEncodeReg4TfChip_ENCFF605QNJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF839IEW ENCSR126EVX Signal bigWig CD4-positive, alpha-beta T cell female adult 33 years DNase signal 2 1356 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/93bced61-4211-460f-88c0-b8bff171249d/ENCFF839IEW.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR126EVX Signal\ track wgEncodeReg4Epigenetics_ENCFF839IEW\ type bigWig\ visibility full\ ChoriocarcinomaCellLineBeWo_CNhs10740_ctss_fwd Cl:BeWo+ bigWig choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_forward 0 1357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aBeWo.CNhs10740.10423-106C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10423-106C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:BeWo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChoriocarcinomaCellLineBeWo_CNhs10740_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9\ urlLabel FANTOM5 Details:\ ChoriocarcinomaCellLineBeWo_CNhs10740_tpm_fwd Cl:BeWo+ bigWig choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_forward 1 1357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aBeWo.CNhs10740.10423-106C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10423-106C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:BeWo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChoriocarcinomaCellLineBeWo_CNhs10740_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF829XRF ENCSR000EZE Peak bigBed 5 HeLa-S3 FOS peaks 4 1357 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/27057743-39cc-47aa-976e-a7df0be644e7/ENCFF829XRF.bigBed\ labelFields none\ longLabel HeLa-S3 FOS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF829XRF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF228WTY ENCSR127PWK Peak bigBed 5 Eye tissue female embryo 76 days DNase peak 4 1357 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/441a58c0-d20b-4652-b3fe-4a3285418eb8/ENCFF228WTY.bigBed\ color 6,218,147\ labelFields none\ longLabel Eye tissue female embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR127PWK Peak\ track wgEncodeReg4Epigenetics_ENCFF228WTY\ type bigBed 5\ visibility squish\ ChoriocarcinomaCellLineBeWo_CNhs10740_ctss_rev Cl:BeWo- bigWig choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_reverse 0 1358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aBeWo.CNhs10740.10423-106C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10423-106C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:BeWo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineBeWo_CNhs10740_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9\ urlLabel FANTOM5 Details:\ ChoriocarcinomaCellLineBeWo_CNhs10740_tpm_rev Cl:BeWo- bigWig choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_reverse 1 1358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aBeWo.CNhs10740.10423-106C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:BeWo_CNhs10740_10423-106C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10423-106C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:BeWo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineBeWo_CNhs10740_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10423-106C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF635GEX ENCSR000EZE Signal bigWig HeLa-S3 FOS ENCSR000EZE signal 2 1358 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/b458f482-3b71-4bc8-9ead-b387fc0d496c/ENCFF635GEX.bigWig\ color 186,111,165\ longLabel HeLa-S3 FOS ENCSR000EZE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZE Signal\ track wgEncodeReg4TfChip_ENCFF635GEX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF356OQE ENCSR127PWK Signal bigWig Eye tissue female embryo 76 days DNase signal 2 1358 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/38da1198-a829-43c6-a2c0-ccaa0bd15bda/ENCFF356OQE.bigWig\ color 6,218,147\ longLabel Eye tissue female embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR127PWK Signal\ track wgEncodeReg4Epigenetics_ENCFF356OQE\ type bigWig\ visibility full\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_fwd Cl:Ca9-22+ bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward 0 1359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ca9-22+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_fwd Cl:Ca9-22+ bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward 1 1359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ca9-22+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF019SXC ENCSR000EZF Peak bigBed 5 HeLa-S3 MAX peaks 4 1359 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/943f3987-8ec2-4444-a2d0-730e8e597dfd/ENCFF019SXC.bigBed\ labelFields none\ longLabel HeLa-S3 MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF019SXC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF526LZC ENCSR128GBN Peak bigBed 5 Spleen tissue female adult 53 years DNase peak 4 1359 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/f5bc523c-e037-47b1-a737-5e8fe157b103/ENCFF526LZC.bigBed\ color 6,218,147\ labelFields none\ longLabel Spleen tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128GBN Peak\ track wgEncodeReg4Epigenetics_ENCFF526LZC\ type bigBed 5\ visibility squish\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_rev Cl:Ca9-22- bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse 0 1360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ca9-22-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_rev Cl:Ca9-22- bigWig oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse 1 1360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aCa9-22.CNhs10752.10434-106E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:Ca9-22_CNhs10752_10434-106E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10434-106E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ca9-22-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineCa922_CNhs10752_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10434-106E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF717HGQ ENCSR000EZF Signal bigWig HeLa-S3 MAX ENCSR000EZF signal 2 1360 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/af7a9fca-217f-4b79-8a40-f1a844b339cd/ENCFF717HGQ.bigWig\ color 186,111,165\ longLabel HeLa-S3 MAX ENCSR000EZF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZF Signal\ track wgEncodeReg4TfChip_ENCFF717HGQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF162OQB ENCSR128GBN Signal bigWig Spleen tissue female adult 53 years DNase signal 2 1360 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/6e5d2890-9297-4ce0-b77a-8ab8a90b93bd/ENCFF162OQB.bigWig\ color 6,218,147\ longLabel Spleen tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128GBN Signal\ track wgEncodeReg4Epigenetics_ENCFF162OQB\ type bigWig\ visibility full\ ColonCarcinomaCellLineCACO2_CNhs11280_ctss_fwd Cl:CACO-2+ bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward 0 1361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CACO-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCACO2_CNhs11280_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCACO2_CNhs11280_tpm_fwd Cl:CACO-2+ bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward 1 1361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CACO-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCACO2_CNhs11280_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF224LWS ENCSR000EZL Peak bigBed 5 HeLa-S3 POLR2A peaks 4 1361 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/ae5bcc0c-3574-40f8-bebe-a06dc61929ea/ENCFF224LWS.bigBed\ labelFields none\ longLabel HeLa-S3 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF224LWS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF066DZO ENCSR128HUJ Peak bigBed 5 T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta H3K27ac peak 4 1361 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/84a7dd17-b31c-4be2-a1cd-8a55136a08b4/ENCFF066DZO.bigBed\ color 181,145,0\ longLabel T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128HUJ Peak\ track wgEncodeReg4Epigenetics_ENCFF066DZO\ type bigBed 5\ visibility squish\ ColonCarcinomaCellLineCACO2_CNhs11280_ctss_rev Cl:CACO-2- bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse 0 1362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CACO-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCACO2_CNhs11280_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCACO2_CNhs11280_tpm_rev Cl:CACO-2- bigWig colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse 1 1362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCACO-2.CNhs11280.10513-107D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:CACO-2_CNhs11280_10513-107D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10513-107D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CACO-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCACO2_CNhs11280_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10513-107D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF979WYY ENCSR000EZL Signal bigWig HeLa-S3 POLR2A ENCSR000EZL signal 2 1362 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/6f5de62b-5c7a-4c1b-a4dd-bea9f32bf132/ENCFF979WYY.bigWig\ color 186,111,165\ longLabel HeLa-S3 POLR2A ENCSR000EZL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000EZL Signal\ track wgEncodeReg4TfChip_ENCFF979WYY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF503ZDS ENCSR128HUJ Signal bigWig T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta H3K27ac signal 2 1362 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/76129d7b-10e0-4235-91e5-35dec690dd18/ENCFF503ZDS.bigWig\ color 181,145,0\ longLabel T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128HUJ Signal\ track wgEncodeReg4Epigenetics_ENCFF503ZDS\ type bigWig\ visibility full\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_fwd Cl:CaSki+ bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward 0 1363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CaSki+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_fwd Cl:CaSki+ bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward 1 1363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CaSki+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF192VNH ENCSR000FAD Peak bigBed 5 K562 RAD21 peaks 4 1363 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/0a8d2c1a-c022-4eaa-83af-2c6da492db2d/ENCFF192VNH.bigBed\ labelFields none\ longLabel K562 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF192VNH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF994BQK ENCSR128QKM Peak bigBed 5 Muscle of leg tissue female embryo 110 days H3K4me3 peak 4 1363 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ead0d0d9-a86a-45dd-a6e9-32d09dff7369/ENCFF994BQK.bigBed\ color 255,0,0\ longLabel Muscle of leg tissue female embryo 110 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128QKM Peak\ track wgEncodeReg4Epigenetics_ENCFF994BQK\ type bigBed 5\ visibility squish\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_rev Cl:CaSki- bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse 0 1364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CaSki-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_rev Cl:CaSki- bigWig epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse 1 1364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epidermoid%20carcinoma%20cell%20line%3aCa%20Ski.CNhs10748.10431-106D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epidermoid carcinoma cell line:Ca Ski_CNhs10748_10431-106D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10431-106D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CaSki-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpidermoidCarcinomaCellLineCaSki_CNhs10748_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10431-106D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF320RTQ ENCSR000FAD Signal bigWig K562 RAD21 ENCSR000FAD signal 2 1364 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/5dd3b2bc-d063-45a9-a1a2-d72d954abc8d/ENCFF320RTQ.bigWig\ color 254,75,173\ longLabel K562 RAD21 ENCSR000FAD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAD Signal\ track wgEncodeReg4TfChip_ENCFF320RTQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF320PWH ENCSR128QKM Signal bigWig Muscle of leg tissue female embryo 110 days H3K4me3 signal 2 1364 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/10d57c5f-a3dc-4797-850d-250ea06cd612/ENCFF320PWH.bigWig\ color 255,0,0\ longLabel Muscle of leg tissue female embryo 110 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128QKM Signal\ track wgEncodeReg4Epigenetics_ENCFF320PWH\ type bigWig\ visibility full\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_fwd Cl:ChaGo-K-1+ bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward 0 1365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ChaGo-K-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_fwd Cl:ChaGo-K-1+ bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward 1 1365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ChaGo-K-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF775FNS ENCSR000FAE Peak bigBed 5 K562 MAX peaks 4 1365 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/2ddb86d0-e36c-478b-b105-98cf4a9c2828/ENCFF775FNS.bigBed\ labelFields none\ longLabel K562 MAX peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128YOH Peak\ track wgEncodeReg4Epigenetics_ENCFF551PCH\ type bigBed 5\ visibility squish\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_rev Cl:ChaGo-K-1- bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse 0 1366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ChaGo-K-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_rev Cl:ChaGo-K-1- bigWig bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse 1 1366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchogenic%20carcinoma%20cell%20line%3aChaGo-K-1.CNhs11841.10710-109H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bronchogenic carcinoma cell line:ChaGo-K-1_CNhs11841_10710-109H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10710-109H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ChaGo-K-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchogenicCarcinomaCellLineChaGoK1_CNhs11841_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10710-109H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF510CZS ENCSR000FAE Signal bigWig K562 MAX ENCSR000FAE signal 2 1366 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/8df4e7c1-d9e0-490f-ac57-ee42f48a1c27/ENCFF510CZS.bigWig\ color 254,75,173\ longLabel K562 MAX ENCSR000FAE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAE Signal\ track wgEncodeReg4TfChip_ENCFF510CZS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF711EZK ENCSR128YOH Signal bigWig Middle frontal area 46 tissue female adult 79 years H3K4me3 signal 2 1366 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6e45924d-ae5b-4800-96e9-05ea0ff73f23/ENCFF711EZK.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 79 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR128YOH Signal\ track wgEncodeReg4Epigenetics_ENCFF711EZK\ type bigWig\ visibility full\ NeuroblastomaCellLineCHP134_CNhs11276_ctss_fwd Cl:CHP-134+ bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward 0 1367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CHP-134+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineCHP134_CNhs11276_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineCHP134_CNhs11276_tpm_fwd Cl:CHP-134+ bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward 1 1367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CHP-134+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineCHP134_CNhs11276_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF333EDW ENCSR000FAF Peak bigBed 5 K562 NFE2 peaks 4 1367 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/7208f273-f606-49f4-8e92-e31a58f9f10c/ENCFF333EDW.bigBed\ labelFields none\ longLabel K562 NFE2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF333EDW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF622WXI ENCSR129BZE Peak bigBed 5 Uterus tissue female adult 53 years DNase peak 4 1367 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/68bdf884-f044-4971-bdfa-ba0903aac927/ENCFF622WXI.bigBed\ color 6,218,147\ labelFields none\ longLabel Uterus tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129BZE Peak\ track wgEncodeReg4Epigenetics_ENCFF622WXI\ type bigBed 5\ visibility squish\ NeuroblastomaCellLineCHP134_CNhs11276_ctss_rev Cl:CHP-134- bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse 0 1368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CHP-134-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineCHP134_CNhs11276_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineCHP134_CNhs11276_tpm_rev Cl:CHP-134- bigWig neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse 1 1368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aCHP-134.CNhs11276.10508-107D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:CHP-134_CNhs11276_10508-107D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10508-107D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CHP-134-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineCHP134_CNhs11276_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10508-107D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF133UXU ENCSR000FAF Signal bigWig K562 NFE2 ENCSR000FAF signal 2 1368 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/927882b8-e4d4-487b-81fb-49f47945d753/ENCFF133UXU.bigWig\ color 254,75,173\ longLabel K562 NFE2 ENCSR000FAF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAF Signal\ track wgEncodeReg4TfChip_ENCFF133UXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF609VNS ENCSR129BZE Signal bigWig Uterus tissue female adult 53 years DNase signal 2 1368 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/3bf165cd-1d32-488a-95ca-4a434d221a61/ENCFF609VNS.bigWig\ color 6,218,147\ longLabel Uterus tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129BZE Signal\ track wgEncodeReg4Epigenetics_ENCFF609VNS\ type bigWig\ visibility full\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_fwd Cl:COBL-a24hinfection(-C)+ bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward 0 1369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection(-C)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_fwd Cl:COBL-a24hinfection(-C)+ bigWig cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward 1 1369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection%28-C%29.CNhs11049.10452-106G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection(-C)_CNhs11049_10452-106G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10452-106G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-a24hinfection(-C)+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfectionC_CNhs11049_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10452-106G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF263IVY ENCSR000FAG Peak bigBed 5 K562 MYC peaks 4 1369 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/f90c585c-a30d-499e-9960-2ff279dae9bd/ENCFF263IVY.bigBed\ labelFields none\ longLabel K562 MYC peaks\ mouseOver Signal: $signalValue
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wgEncodeReg4Epigenetics_ENCFF371TES\ type bigWig\ visibility full\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_fwd Cl:COBL-a24hinfection+ bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward 0 1371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ 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https://encode-public.s3.amazonaws.com/2020/12/10/89a43807-de62-4537-a3f2-266cee86d937/ENCFF455LLS.bigBed\ labelFields none\ longLabel K562 JUN peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129KIV Peak\ track wgEncodeReg4Epigenetics_ENCFF298QLW\ type bigBed 5\ visibility squish\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_rev Cl:COBL-a24hinfection- bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse 0 1372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-a24hinfection-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_rev Cl:COBL-a24hinfection- bigWig cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse 1 1372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%2024h%20infection.CNhs11050.10453-106G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a 24h infection_CNhs11050_10453-106G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10453-106G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-a24hinfection-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLa24hInfection_CNhs11050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10453-106G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF764AXM ENCSR000FAH Signal bigWig K562 JUN ENCSR000FAH signal 2 1372 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/cb6b3bfb-4bf2-4060-85d0-20bf6267ccad/ENCFF764AXM.bigWig\ color 254,75,173\ longLabel K562 JUN ENCSR000FAH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAH Signal\ track wgEncodeReg4TfChip_ENCFF764AXM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF162BFA ENCSR129KIV Signal bigWig Renal cortex interstitium tissue male embryo 108 days DNase signal 2 1372 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/057f6c8b-aaeb-4bc3-84ed-e5828c1c1203/ENCFF162BFA.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue male embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129KIV Signal\ track wgEncodeReg4Epigenetics_ENCFF162BFA\ type bigWig\ visibility full\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_fwd Cl:COBL-auntreated+ bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward 0 1373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-auntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_fwd Cl:COBL-auntreated+ bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward 1 1373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-auntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF951GBI ENCSR000FAI Peak bigBed 5 K562 FOS peaks 4 1373 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/3d59524f-3816-43a7-9060-c0ccf1675438/ENCFF951GBI.bigBed\ labelFields none\ longLabel K562 FOS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF951GBI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF039SDG ENCSR129NCV Peak bigBed 5 Stomach tissue male adult 34 years H3K4me3 peak 4 1373 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/94c429c1-b37b-4a61-86f1-bdf1b8583c29/ENCFF039SDG.bigBed\ color 255,0,0\ longLabel Stomach tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129NCV Peak\ track wgEncodeReg4Epigenetics_ENCFF039SDG\ type bigBed 5\ visibility squish\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_rev Cl:COBL-auntreated- bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse 0 1374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COBL-auntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_rev Cl:COBL-auntreated- bigWig cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse 1 1374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cord%20blood%20derived%20cell%20line%3aCOBL-a%20untreated.CNhs11045.10449-106F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cord blood derived cell line:COBL-a untreated_CNhs11045_10449-106F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10449-106F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COBL-auntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CordBloodDerivedCellLineCOBLaUntreated_CNhs11045_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10449-106F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF378SNN ENCSR000FAI Signal bigWig K562 FOS ENCSR000FAI signal 2 1374 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/55b468ee-92d5-4dca-b9b6-7c46f78997f9/ENCFF378SNN.bigWig\ color 254,75,173\ longLabel K562 FOS ENCSR000FAI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAI Signal\ track wgEncodeReg4TfChip_ENCFF378SNN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF664UKA ENCSR129NCV Signal bigWig Stomach tissue male adult 34 years H3K4me3 signal 2 1374 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/3c5ce391-1859-4b10-af6e-c066764b2dbe/ENCFF664UKA.bigWig\ color 255,0,0\ longLabel Stomach tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129NCV Signal\ track wgEncodeReg4Epigenetics_ENCFF664UKA\ type bigWig\ visibility full\ ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_fwd Cl:COLO-320+ bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward 0 1375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO-320+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_fwd Cl:COLO-320+ bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward 1 1375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO-320+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF757TUO ENCSR000FAJ Peak bigBed 5 K562 POLR2A peaks 4 1375 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/83e851ef-b632-47b2-ad06-f8247b1e62a8/ENCFF757TUO.bigBed\ labelFields none\ longLabel K562 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF757TUO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF686BJE ENCSR129TSG Peak bigBed 5 Placenta tissue female embryo 108 days DNase peak 4 1375 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/498d5969-85cd-47a1-8d4c-c8ddb577b42a/ENCFF686BJE.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129TSG Peak\ track wgEncodeReg4Epigenetics_ENCFF686BJE\ type bigBed 5\ visibility squish\ ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_rev Cl:COLO-320- bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse 0 1376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO-320-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCOLO320_CNhs10737_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_rev Cl:COLO-320- bigWig colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse 1 1376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%20carcinoma%20cell%20line%3aCOLO-320.CNhs10737.10420-106C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon carcinoma cell line:COLO-320_CNhs10737_10420-106C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10420-106C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO-320-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ColonCarcinomaCellLineCOLO320_CNhs10737_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10420-106C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF444MEV ENCSR000FAJ Signal bigWig K562 POLR2A ENCSR000FAJ signal 2 1376 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/a6dc8b48-d603-49be-bece-5bb99b7a6c6c/ENCFF444MEV.bigWig\ color 254,75,173\ longLabel K562 POLR2A ENCSR000FAJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAJ Signal\ track wgEncodeReg4TfChip_ENCFF444MEV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF471IFY ENCSR129TSG Signal bigWig Placenta tissue female embryo 108 days DNase signal 2 1376 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/eb2b2a5f-4ccc-4dda-8f89-04157e6b2a32/ENCFF471IFY.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR129TSG Signal\ track wgEncodeReg4Epigenetics_ENCFF471IFY\ type bigWig\ visibility full\ MelanomaCellLineCOLO679_CNhs11281_ctss_fwd Cl:COLO679+ bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward 0 1377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO679+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineCOLO679_CNhs11281_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ MelanomaCellLineCOLO679_CNhs11281_tpm_fwd Cl:COLO679+ bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward 1 1377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO679+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineCOLO679_CNhs11281_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF780KAX ENCSR000FAL Peak bigBed 5 NB4 POLR2A peaks 4 1377 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/f8d9c0be-0a57-43d9-9f71-fb56c6194813/ENCFF780KAX.bigBed\ labelFields none\ longLabel NB4 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF780KAX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF237JYA ENCSR130HIE Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours DNase peak 4 1377 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/eefa1eef-01e9-4026-9f36-fd4de09fd75d/ENCFF237JYA.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR130HIE Peak\ track wgEncodeReg4Epigenetics_ENCFF237JYA\ type bigBed 5\ visibility squish\ MelanomaCellLineCOLO679_CNhs11281_ctss_rev Cl:COLO679- bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse 0 1378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:COLO679-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineCOLO679_CNhs11281_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ MelanomaCellLineCOLO679_CNhs11281_tpm_rev Cl:COLO679- bigWig melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse 1 1378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aCOLO%20679.CNhs11281.10514-107E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel melanoma cell line:COLO 679_CNhs11281_10514-107E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10514-107E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:COLO679-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineCOLO679_CNhs11281_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10514-107E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF039LKD ENCSR000FAL Signal bigWig NB4 POLR2A ENCSR000FAL signal 2 1378 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/10/aed3016c-0446-4b13-a574-5399ef446248/ENCFF039LKD.bigWig\ color 2,199,185\ longLabel NB4 POLR2A ENCSR000FAL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FAL Signal\ track wgEncodeReg4TfChip_ENCFF039LKD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF773HCD ENCSR130HIE Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours DNase signal 2 1378 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/cda5ffda-22e7-4526-b473-62e587cd3eb8/ENCFF773HCD.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-7 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR130HIE Signal\ track wgEncodeReg4Epigenetics_ENCFF773HCD\ type bigWig\ visibility full\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_fwd Cl:CTB-1+ bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward 0 1379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CTB-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_fwd Cl:CTB-1+ bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward 1 1379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CTB-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF512RED ENCSR000FCB Peak bigBed 5 K562 MITF peaks 4 1379 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/9fbb059e-5eb9-4390-b0f5-99959d52c8ee/ENCFF512RED.bigBed\ labelFields none\ longLabel K562 MITF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF512RED\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF542NQV ENCSR130LEE Peak bigBed 5 Naive B cell male adult 40 years H3K4me3 peak 4 1379 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/6194e491-9fe7-4a6b-925c-6e884dbb3de4/ENCFF542NQV.bigBed\ color 255,0,0\ longLabel Naive B cell male adult 40 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR130LEE Peak\ track wgEncodeReg4Epigenetics_ENCFF542NQV\ type bigBed 5\ visibility squish\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_rev Cl:CTB-1- bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse 0 1380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:CTB-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_rev Cl:CTB-1- bigWig diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse 1 1380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diffuse%20large%20B-cell%20lymphoma%20cell%20line%3aCTB-1.CNhs11741.10631-108I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel diffuse large B-cell lymphoma cell line:CTB-1_CNhs11741_10631-108I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10631-108I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:CTB-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DiffuseLargeBcellLymphomaCellLineCTB1_CNhs11741_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10631-108I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF344TTK ENCSR000FCB Signal bigWig K562 MITF ENCSR000FCB signal 2 1380 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/be9399ce-ad2e-4229-b93c-c6c90b85b7a4/ENCFF344TTK.bigWig\ color 254,75,173\ longLabel K562 MITF ENCSR000FCB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCB Signal\ track wgEncodeReg4TfChip_ENCFF344TTK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF067FAK ENCSR130LEE Signal bigWig Naive B cell male adult 40 years H3K4me3 signal 2 1380 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e921d0c7-ab8b-41f2-927a-7d814b06bbb8/ENCFF067FAK.bigWig\ color 255,0,0\ longLabel Naive B cell male adult 40 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR130LEE Signal\ track wgEncodeReg4Epigenetics_ENCFF067FAK\ type bigWig\ visibility full\ MedulloblastomaCellLineD283Med_CNhs12805_ctss_fwd Cl:D283Med+ bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward 0 1381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D283Med+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MedulloblastomaCellLineD283Med_CNhs12805_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ MedulloblastomaCellLineD283Med_CNhs12805_tpm_fwd Cl:D283Med+ bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward 1 1381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D283Med+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MedulloblastomaCellLineD283Med_CNhs12805_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF163BSI ENCSR000FCC Peak bigBed 5 K562 NFE2 peaks 4 1381 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/84381fa3-ee10-436d-82f9-da1e772c7011/ENCFF163BSI.bigBed\ labelFields none\ longLabel K562 NFE2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF163BSI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF169IQC ENCSR130PLZ Peak bigBed 5 Neurosphere female embryo 17 weeks originated from ganglionic eminence H3K4me3 peak 4 1381 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/9f7619d6-d942-4209-9a74-84caf473a913/ENCFF169IQC.bigBed\ color 255,0,0\ longLabel Neurosphere female embryo 17 weeks originated from ganglionic eminence H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR130PLZ Peak\ track wgEncodeReg4Epigenetics_ENCFF169IQC\ type bigBed 5\ visibility squish\ MedulloblastomaCellLineD283Med_CNhs12805_ctss_rev Cl:D283Med- bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse 0 1382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D283Med-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MedulloblastomaCellLineD283Med_CNhs12805_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ MedulloblastomaCellLineD283Med_CNhs12805_tpm_rev Cl:D283Med- bigWig medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse 1 1382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aD283%20Med.CNhs12805.10838-111E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulloblastoma cell line:D283 Med_CNhs12805_10838-111E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10838-111E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D283Med-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MedulloblastomaCellLineD283Med_CNhs12805_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10838-111E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF024HES ENCSR000FCC Signal bigWig K562 NFE2 ENCSR000FCC signal 2 1382 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/fdcd3b1f-2239-40c9-915f-96db03558844/ENCFF024HES.bigWig\ color 254,75,173\ longLabel K562 NFE2 ENCSR000FCC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCC Signal\ track wgEncodeReg4TfChip_ENCFF024HES\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF736MMN ENCSR130PLZ Signal bigWig Neurosphere female embryo 17 weeks originated from ganglionic eminence H3K4me3 signal 2 1382 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7bf6c4fc-7c30-41d7-a803-3abe582d0eaf/ENCFF736MMN.bigWig\ color 255,0,0\ longLabel Neurosphere female embryo 17 weeks originated from ganglionic eminence H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR130PLZ Signal\ track wgEncodeReg4Epigenetics_ENCFF736MMN\ type bigWig\ visibility full\ CervicalCancerCellLineD98AH2_CNhs11288_ctss_fwd Cl:D98-AH2+ bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward 0 1383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D98-AH2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CervicalCancerCellLineD98AH2_CNhs11288_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ CervicalCancerCellLineD98AH2_CNhs11288_tpm_fwd Cl:D98-AH2+ bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward 1 1383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D98-AH2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CervicalCancerCellLineD98AH2_CNhs11288_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF941FJJ ENCSR000FCD Peak bigBed 5 K562 SMAD5 peaks 4 1383 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/2f4c7a89-3821-4226-8134-54c7e6aaed9c/ENCFF941FJJ.bigBed\ labelFields none\ longLabel K562 SMAD5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF941FJJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF331KGO ENCSR131DVD Peak bigBed 5 HAP-1 H3K27ac peak 4 1383 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/5e334c8d-4676-4b72-a1bf-399ef8de1416/ENCFF331KGO.bigBed\ color 181,145,0\ longLabel HAP-1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131DVD Peak\ track wgEncodeReg4Epigenetics_ENCFF331KGO\ type bigBed 5\ visibility squish\ CervicalCancerCellLineD98AH2_CNhs11288_ctss_rev Cl:D98-AH2- bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse 0 1384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:D98-AH2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CervicalCancerCellLineD98AH2_CNhs11288_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ CervicalCancerCellLineD98AH2_CNhs11288_tpm_rev Cl:D98-AH2- bigWig cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse 1 1384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aD98-AH2.CNhs11288.10552-107I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cervical cancer cell line:D98-AH2_CNhs11288_10552-107I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10552-107I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:D98-AH2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CervicalCancerCellLineD98AH2_CNhs11288_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10552-107I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF094FAV ENCSR000FCD Signal bigWig K562 SMAD5 ENCSR000FCD signal 2 1384 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/9ab7e4ff-edb1-4ae4-9354-43648e28916f/ENCFF094FAV.bigWig\ color 254,75,173\ longLabel K562 SMAD5 ENCSR000FCD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCD Signal\ track wgEncodeReg4TfChip_ENCFF094FAV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF730PAV ENCSR131DVD Signal bigWig HAP-1 H3K27ac signal 2 1384 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/147a01b6-a319-4588-81b4-78cf512b0749/ENCFF730PAV.bigWig\ color 181,145,0\ longLabel HAP-1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131DVD Signal\ track wgEncodeReg4Epigenetics_ENCFF730PAV\ type bigWig\ visibility full\ BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_fwd Cl:DAUDI+ bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward 0 1385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DAUDI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_fwd Cl:DAUDI+ bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward 1 1385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DAUDI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF311NMS ENCSR000FCE Peak bigBed 5 K562 ETV6 peaks 4 1385 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/369749a7-1607-4ba9-bb5e-407192540c5e/ENCFF311NMS.bigBed\ labelFields none\ longLabel K562 ETV6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF311NMS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF850VWU ENCSR131HOY Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 1385 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/fbe26be1-0700-4167-9654-620cbfd57c88/ENCFF850VWU.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131HOY Peak\ track wgEncodeReg4Epigenetics_ENCFF850VWU\ type bigBed 5\ visibility squish\ BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_rev Cl:DAUDI- bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse 0 1386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DAUDI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_rev Cl:DAUDI- bigWig Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse 1 1386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aDAUDI.CNhs10739.10422-106C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Burkitt's lymphoma cell line:DAUDI_CNhs10739_10422-106C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10422-106C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DAUDI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BurkittsLymphomaCellLineDAUDI_CNhs10739_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10422-106C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF096HGW ENCSR000FCE Signal bigWig K562 ETV6 ENCSR000FCE signal 2 1386 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/63123f52-27d1-44fd-bab6-573a3904c939/ENCFF096HGW.bigWig\ color 254,75,173\ longLabel K562 ETV6 ENCSR000FCE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000FCE Signal\ track wgEncodeReg4TfChip_ENCFF096HGW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF632QIA ENCSR131HOY Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 1386 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/49318bd8-da7d-4ba9-8fcf-d4b97ebf6818/ENCFF632QIA.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131HOY Signal\ track wgEncodeReg4Epigenetics_ENCFF632QIA\ type bigWig\ visibility full\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_fwd Cl:Detroit562+ bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward 0 1387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Detroit562+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_fwd Cl:Detroit562+ bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward 1 1387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Detroit562+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF627LON ENCSR000HPG Peak bigBed 5 IMR-90 SMC3 peaks 4 1387 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e4f7039c-1c99-450c-9f83-37612d732f61/ENCFF627LON.bigBed\ labelFields none\ longLabel IMR-90 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000HPG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF627LON\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF808HCP ENCSR131MFE Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 86 years H3K4me3 peak 4 1387 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/a352cb9a-ba2f-4a01-924e-b44f057f6f96/ENCFF808HCP.bigBed\ color 255,0,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 86 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131MFE Peak\ track wgEncodeReg4Epigenetics_ENCFF808HCP\ type bigBed 5\ visibility squish\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_rev Cl:Detroit562- bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse 0 1388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Detroit562-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_rev Cl:Detroit562- bigWig pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse 1 1388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pharyngeal%20carcinoma%20cell%20line%3aDetroit%20562.CNhs11849.10723-110A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pharyngeal carcinoma cell line:Detroit 562_CNhs11849_10723-110A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10723-110A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Detroit562-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PharyngealCarcinomaCellLineDetroit562_CNhs11849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10723-110A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF419WLH ENCSR000HPG Signal bigWig IMR-90 SMC3 ENCSR000HPG signal 2 1388 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/b2669d42-bf6c-4db8-9726-489b227d5d8c/ENCFF419WLH.bigWig\ color 130,163,45\ longLabel IMR-90 SMC3 ENCSR000HPG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000HPG Signal\ track wgEncodeReg4TfChip_ENCFF419WLH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF066MLC ENCSR131MFE Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 86 years H3K4me3 signal 2 1388 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/123020c4-8360-41c4-bb27-151ae3622b8d/ENCFF066MLC.bigWig\ color 255,0,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 86 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131MFE Signal\ track wgEncodeReg4Epigenetics_ENCFF066MLC\ type bigWig\ visibility full\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_fwd Cl:DJM-1+ bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward 0 1389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DJM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_fwd Cl:DJM-1+ bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward 1 1389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DJM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF024QBJ ENCSR000MMZ Peak bigBed 5 Upper lobe of left lung tissue female adult (51 years) EP300 peaks 4 1389 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/0fd0b15b-7d95-4c6e-88d3-b4a8f60d95da/ENCFF024QBJ.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (51 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000MMZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF024QBJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF084YOE ENCSR131ZVC Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak 4 1389 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/bfbe4e49-0e3a-4b14-89ac-4d27669b16c4/ENCFF084YOE.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131ZVC Peak\ track wgEncodeReg4Epigenetics_ENCFF084YOE\ type bigBed 5\ visibility squish\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_rev Cl:DJM-1- bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse 0 1390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DJM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_rev Cl:DJM-1- bigWig malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse 1 1390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/malignant%20trichilemmal%20cyst%20cell%20line%3aDJM-1.CNhs10730.10412-106B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel malignant trichilemmal cyst cell line:DJM-1_CNhs10730_10412-106B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10412-106B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DJM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MalignantTrichilemmalCystCellLineDJM1_CNhs10730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10412-106B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF014DUJ ENCSR000MMZ Signal bigWig Upper lobe of left lung tissue female adult (51 years) EP300 ENCSR000MMZ signal 2 1390 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/7a7e107a-c685-47fa-8187-6de866a193ce/ENCFF014DUJ.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (51 years) EP300 ENCSR000MMZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR000MMZ Signal\ track wgEncodeReg4TfChip_ENCFF014DUJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF373EXM ENCSR131ZVC Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal 2 1390 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/780ea8de-ca4f-4a0b-b02d-5a184a3eff7d/ENCFF373EXM.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR131ZVC Signal\ track wgEncodeReg4Epigenetics_ENCFF373EXM\ type bigWig\ visibility full\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_fwd Cl:DMS144+ bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward 0 1391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DMS144+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_fwd Cl:DMS144+ bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward 1 1391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DMS144+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF582AFY ENCSR003GUC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1 E4F1 peaks 4 1391 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/16/aa1c005c-4074-40b8-9223-87d1fb4a1df2/ENCFF582AFY.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1 E4F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR003GUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF582AFY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF150FXW ENCSR133AFF Peak bigBed 5 Lower lobe of left lung tissue female adult 59 years CTCF peak 4 1391 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/6b014f26-526a-4713-a22c-567a9864993c/ENCFF150FXW.bigBed\ color 0,176,240\ labelFields none\ longLabel Lower lobe of left lung tissue female adult 59 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133AFF Peak\ track wgEncodeReg4Epigenetics_ENCFF150FXW\ type bigBed 5\ visibility squish\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_rev Cl:DMS144- bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse 0 1392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DMS144-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_rev Cl:DMS144- bigWig small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse 1 1392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aDMS%20144.CNhs12808.10841-111E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:DMS 144_CNhs12808_10841-111E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10841-111E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DMS144-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineDMS144_CNhs12808_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10841-111E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF746DWK ENCSR003GUC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1 E4F1 ENCSR003GUC signal 2 1392 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/16/7e5792d1-2016-4b02-bf48-e3fe5a67b344/ENCFF746DWK.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1 E4F1 ENCSR003GUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR003GUC Signal\ track wgEncodeReg4TfChip_ENCFF746DWK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF033FEG ENCSR133AFF Signal bigWig Lower lobe of left lung tissue female adult 59 years CTCF signal 2 1392 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5ddea903-47ee-42cc-851b-612747874a3a/ENCFF033FEG.bigWig\ color 0,176,240\ longLabel Lower lobe of left lung tissue female adult 59 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133AFF Signal\ track wgEncodeReg4Epigenetics_ENCFF033FEG\ type bigWig\ visibility full\ LymphangiectasiaCellLineDS1_CNhs11852_ctss_fwd Cl:DS-1+ bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward 0 1393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphangiectasiaCellLineDS1_CNhs11852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ LymphangiectasiaCellLineDS1_CNhs11852_tpm_fwd Cl:DS-1+ bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward 1 1393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphangiectasiaCellLineDS1_CNhs11852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF571ODZ ENCSR003SZZ Peak bigBed 5 Esophagus squamous epithelium tissue female adult (51 years) CTCF peaks 4 1393 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/b5965905-5857-4d0f-92a3-566d98bea9d7/ENCFF571ODZ.bigBed\ labelFields none\ longLabel Esophagus squamous epithelium tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR003SZZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF571ODZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF743QND ENCSR133CMC Peak bigBed 5 Heart right ventricle tissue male adult 69 years ATAC peak 4 1393 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/2d13c9a9-3496-46b8-9755-307e6cb292a7/ENCFF743QND.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 69 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133CMC Peak\ track wgEncodeReg4Epigenetics_ENCFF743QND\ type bigBed 5\ visibility squish\ LymphangiectasiaCellLineDS1_CNhs11852_ctss_rev Cl:DS-1- bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse 0 1394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphangiectasiaCellLineDS1_CNhs11852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ LymphangiectasiaCellLineDS1_CNhs11852_tpm_rev Cl:DS-1- bigWig lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse 1 1394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphangiectasia%20cell%20line%3aDS-1.CNhs11852.10727-110A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lymphangiectasia cell line:DS-1_CNhs11852_10727-110A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10727-110A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphangiectasiaCellLineDS1_CNhs11852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10727-110A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF890GCO ENCSR003SZZ Signal bigWig Esophagus squamous epithelium tissue female adult (51 years) CTCF ENCSR003SZZ signal 2 1394 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/52784431-d6ca-4700-bc45-a91a6389175d/ENCFF890GCO.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (51 years) CTCF ENCSR003SZZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR003SZZ Signal\ track wgEncodeReg4TfChip_ENCFF890GCO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF190EVO ENCSR133CMC Signal bigWig Heart right ventricle tissue male adult 69 years ATAC signal 2 1394 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/88cfe7f1-7633-4b22-b9c3-b6defe34db11/ENCFF190EVO.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 69 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133CMC Signal\ track wgEncodeReg4Epigenetics_ENCFF190EVO\ type bigWig\ visibility full\ ProstateCancerCellLineDU145_CNhs11260_ctss_fwd Cl:DU145+ bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward 0 1395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DU145+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ProstateCancerCellLineDU145_CNhs11260_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ ProstateCancerCellLineDU145_CNhs11260_tpm_fwd Cl:DU145+ bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward 1 1395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DU145+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ProstateCancerCellLineDU145_CNhs11260_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF795CMH ENCSR004GKA Peak bigBed 5 K562 ZEB2 peaks 4 1395 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/7cfcfa45-33bd-442d-b901-c2b1a7d18459/ENCFF795CMH.bigBed\ labelFields none\ longLabel K562 ZEB2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR004GKA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF795CMH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF006ONN ENCSR133KBX Peak bigBed 5 Small intestine tissue female embryo 107 days DNase peak 4 1395 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/606a7cad-360e-4c89-abd8-9ed42ee0b37b/ENCFF006ONN.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue female embryo 107 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133KBX Peak\ track wgEncodeReg4Epigenetics_ENCFF006ONN\ type bigBed 5\ visibility squish\ ProstateCancerCellLineDU145_CNhs11260_ctss_rev Cl:DU145- bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse 0 1396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:DU145-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ProstateCancerCellLineDU145_CNhs11260_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ ProstateCancerCellLineDU145_CNhs11260_tpm_rev Cl:DU145- bigWig prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse 1 1396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aDU145.CNhs11260.10490-107B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel prostate cancer cell line:DU145_CNhs11260_10490-107B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10490-107B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:DU145-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ProstateCancerCellLineDU145_CNhs11260_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10490-107B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF634NAO ENCSR004HEA Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OTX2 OTX2 peaks 4 1396 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/30/55913179-e50c-45ab-aaef-109ee39c4220/ENCFF634NAO.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OTX2 OTX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR004HEA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF634NAO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF954WCZ ENCSR133KBX Signal bigWig Small intestine tissue female embryo 107 days DNase signal 2 1396 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/da9f05e6-f719-4762-963d-992c654797f6/ENCFF954WCZ.bigWig\ color 6,218,147\ longLabel Small intestine tissue female embryo 107 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133KBX Signal\ track wgEncodeReg4Epigenetics_ENCFF954WCZ\ type bigWig\ visibility full\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_fwd Cl:EBC-1+ bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward 0 1397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EBC-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_fwd Cl:EBC-1+ bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward 1 1397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EBC-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF273DMP ENCSR004HEA Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OTX2 OTX2 ENCSR004HEA signal 2 1397 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/30/67d12f4c-b02d-43ea-9774-3b89b770cfce/ENCFF273DMP.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OTX2 OTX2 ENCSR004HEA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR004HEA Signal\ track wgEncodeReg4TfChip_ENCFF273DMP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF225PPI ENCSR133NBJ Signal bigWig Stomach tissue female adult 53 years H3K27ac signal 2 1397 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/e3220dce-c86d-4754-b7ad-ae491291a5cf/ENCFF225PPI.bigWig\ color 181,145,0\ longLabel Stomach tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133NBJ Signal\ track wgEncodeReg4Epigenetics_ENCFF225PPI\ type bigWig\ visibility full\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_rev Cl:EBC-1- bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse 0 1398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EBC-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_rev Cl:EBC-1- bigWig squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse 1 1398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aEBC-1.CNhs11273.10486-107A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:EBC-1_CNhs11273_10486-107A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10486-107A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EBC-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineEBC1_CNhs11273_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10486-107A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF679BCK ENCSR004PLU Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB10 ZBTB10 peaks 4 1398 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/7ac94002-e69c-4259-8348-b603ce3d4baf/ENCFF679BCK.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB10 ZBTB10 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR004PLU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF679BCK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF803CSX ENCSR133OSO Peak bigBed 5 Activated regulatory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak 4 1398 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/d8ee69e1-f461-41b5-83d7-b0038034a142/ENCFF803CSX.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated regulatory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133OSO Peak\ track wgEncodeReg4Epigenetics_ENCFF803CSX\ type bigBed 5\ visibility squish\ SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_fwd Cl:EC-GI-10+ bigWig squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_forward 0 1399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aEC-GI-10.CNhs11252.10463-106H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10463-106H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EC-GI-10+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4\ urlLabel FANTOM5 Details:\ 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2 1399 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/24d43139-d434-4a16-a5e4-ab358504d2f0/ENCFF154QQN.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB10 ZBTB10 ENCSR004PLU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR004PLU Signal\ track wgEncodeReg4TfChip_ENCFF154QQN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF836VOQ ENCSR133OSO Signal bigWig Activated regulatory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 1399 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/e1ac0c60-d8a5-4078-9a40-e5bbe5f9993d/ENCFF836VOQ.bigWig\ color 6,218,147\ longLabel Activated regulatory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133OSO Signal\ track wgEncodeReg4Epigenetics_ENCFF836VOQ\ type bigWig\ visibility full\ SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_rev Cl:EC-GI-10- bigWig squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_reverse 0 1400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10463-106H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aEC-GI-10.CNhs11252.10463-106H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel squamous cell carcinoma cell line:EC-GI-10_CNhs11252_10463-106H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10463-106H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EC-GI-10-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellCarcinomaCellLineECGI10_CNhs11252_ctss_rev\ type bigWig\ url 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CRISPR targeting H. sapiens SMAD3 SMAD3 peaks 4 1400 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/6034f8f6-d70a-4958-b246-82fb4f4fa89f/ENCFF309PKF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 SMAD3 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133QIE Peak\ track wgEncodeReg4Epigenetics_ENCFF979QRM\ type bigBed 5\ visibility squish\ SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_ctss_fwd Cl:ECC10+ bigWig small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward 0 1401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC10.CNhs11736.10610-108F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10610-108F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC10+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7\ urlLabel FANTOM5 Details:\ SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_tpm_fwd Cl:ECC10+ bigWig small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward 1 1401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC10.CNhs11736.10610-108F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10610-108F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC10+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF638KTX ENCSR005GZH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 SMAD3 ENCSR005GZH signal 2 1401 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/966fa4cc-80dc-4451-91a3-c37b47296c67/ENCFF638KTX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 SMAD3 ENCSR005GZH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR005GZH Signal\ track wgEncodeReg4TfChip_ENCFF638KTX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF028LAC ENCSR133QIE Signal bigWig Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours 2 1401 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/b037001a-b39a-4688-88d4-bbe74c0e5214/ENCFF028LAC.bigWig\ color 6,218,147\ longLabel Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133QIE Signal\ track wgEncodeReg4Epigenetics_ENCFF028LAC\ type bigWig\ visibility full\ SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_ctss_rev Cl:ECC10- bigWig small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_reverse 0 1402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC10.CNhs11736.10610-108F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10610-108F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC10-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7\ urlLabel FANTOM5 Details:\ SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_tpm_rev Cl:ECC10- bigWig small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_reverse 1 1402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC10.CNhs11736.10610-108F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small cell gastrointestinal carcinoma cell line:ECC10_CNhs11736_10610-108F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10610-108F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC10-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellGastrointestinalCarcinomaCellLineECC10_CNhs11736_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10610-108F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF170RNI ENCSR005NMT Peak bigBed 5 K562 stably expressing ID3 ID3 peaks 4 1402 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/e89105b6-dcc4-4e5b-9a2f-134c004cd8b9/ENCFF170RNI.bigBed\ labelFields none\ longLabel K562 stably expressing ID3 ID3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR005NMT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF170RNI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF162BMY ENCSR133QMT Peak bigBed 5 Neural crest cell H3K4me3 peak 4 1402 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/9149c013-9e85-49b3-99d9-81865f8f90ee/ENCFF162BMY.bigBed\ color 255,0,0\ longLabel Neural crest cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133QMT Peak\ track wgEncodeReg4Epigenetics_ENCFF162BMY\ type bigBed 5\ visibility squish\ GastrointestinalCarcinomaCellLineECC12_CNhs11738_ctss_fwd Cl:ECC12+ bigWig gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_forward 0 1403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastrointestinal%20carcinoma%20cell%20line%3aECC12.CNhs11738.10615-108G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10615-108G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC12+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastrointestinalCarcinomaCellLineECC12_CNhs11738_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3\ urlLabel FANTOM5 Details:\ GastrointestinalCarcinomaCellLineECC12_CNhs11738_tpm_fwd Cl:ECC12+ bigWig gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_forward 1 1403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastrointestinal%20carcinoma%20cell%20line%3aECC12.CNhs11738.10615-108G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10615-108G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC12+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastrointestinalCarcinomaCellLineECC12_CNhs11738_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF196NSS ENCSR005NMT Signal bigWig K562 stably expressing ID3 ID3 ENCSR005NMT signal 2 1403 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/018bcccc-5726-42f6-af56-b57266884834/ENCFF196NSS.bigWig\ color 254,75,173\ longLabel K562 stably expressing ID3 ID3 ENCSR005NMT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR005NMT Signal\ track wgEncodeReg4TfChip_ENCFF196NSS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF836WEE ENCSR133SPH Peak bigBed 5 Large intestine tissue female embryo 120 days DNase peak 4 1403 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/8492d01a-ff4e-410b-9b6e-c92a397e16ee/ENCFF836WEE.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133SPH Peak\ track wgEncodeReg4Epigenetics_ENCFF836WEE\ type bigBed 5\ visibility squish\ GastrointestinalCarcinomaCellLineECC12_CNhs11738_ctss_rev Cl:ECC12- bigWig gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse 0 1404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastrointestinal%20carcinoma%20cell%20line%3aECC12.CNhs11738.10615-108G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10615-108G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastrointestinalCarcinomaCellLineECC12_CNhs11738_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3\ urlLabel FANTOM5 Details:\ GastrointestinalCarcinomaCellLineECC12_CNhs11738_tpm_rev Cl:ECC12- bigWig gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse 1 1404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastrointestinal%20carcinoma%20cell%20line%3aECC12.CNhs11738.10615-108G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gastrointestinal carcinoma cell line:ECC12_CNhs11738_10615-108G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10615-108G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastrointestinalCarcinomaCellLineECC12_CNhs11738_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10615-108G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF537FDC ENCSR005WGY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407 ZNF407 peaks 4 1404 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/55c713c3-bc77-479f-9d53-bc5a2a5417cf/ENCFF537FDC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407 ZNF407 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR005WGY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF537FDC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF079LOE ENCSR133SPH Signal bigWig Large intestine tissue female embryo 120 days DNase signal 2 1404 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/41f9d4d4-363c-4f6b-940d-1d2fb1e13113/ENCFF079LOE.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133SPH Signal\ track wgEncodeReg4Epigenetics_ENCFF079LOE\ type bigWig\ visibility full\ SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_ctss_fwd Cl:ECC4+ bigWig small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward 0 1405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small-cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC4.CNhs11734.10609-108F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10609-108F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6\ urlLabel FANTOM5 Details:\ SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_tpm_fwd Cl:ECC4+ bigWig small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward 1 1405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small-cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC4.CNhs11734.10609-108F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10609-108F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF950PMP ENCSR005WGY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407 ZNF407 ENCSR005WGY signal 2 1405 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/fd3b4235-fbe4-47fb-b500-5fe7983c592f/ENCFF950PMP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407 ZNF407 ENCSR005WGY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR005WGY Signal\ track wgEncodeReg4TfChip_ENCFF950PMP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF915ERB ENCSR133WJY Peak bigBed 5 Left ventricle myocardium superior tissue male adult 60 years ATAC peak 4 1405 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/730ce1de-70a0-45f7-b856-0e01cbc6f553/ENCFF915ERB.bigBed\ color 2,199,185\ longLabel Left ventricle myocardium superior tissue male adult 60 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133WJY Peak\ track wgEncodeReg4Epigenetics_ENCFF915ERB\ type bigBed 5\ visibility squish\ SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_ctss_rev Cl:ECC4- bigWig small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_reverse 0 1406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small-cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC4.CNhs11734.10609-108F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10609-108F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ECC4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6\ urlLabel FANTOM5 Details:\ SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_tpm_rev Cl:ECC4- bigWig small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_reverse 1 1406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small-cell%20gastrointestinal%20carcinoma%20cell%20line%3aECC4.CNhs11734.10609-108F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small-cell gastrointestinal carcinoma cell line:ECC4_CNhs11734_10609-108F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10609-108F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ECC4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallcellGastrointestinalCarcinomaCellLineECC4_CNhs11734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10609-108F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF326EGX ENCSR006GAQ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF10 KLF10 peaks 4 1406 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ed9aba48-f05c-4413-a689-670b6d172fd7/ENCFF326EGX.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF10 KLF10 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR006GAQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF326EGX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF225VDO ENCSR133WJY Signal bigWig Left ventricle myocardium superior tissue male adult 60 years ATAC signal 2 1406 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/6331f151-bb5f-4f28-83bd-5a77c95c11ca/ENCFF225VDO.bigWig\ color 2,199,185\ longLabel Left ventricle myocardium superior tissue male adult 60 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR133WJY Signal\ track wgEncodeReg4Epigenetics_ENCFF225VDO\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_fwd Cl:EEB+ bigWig acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward 0 1407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aEEB.CNhs13059.10835-111D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10835-111D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EEB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_tpm_fwd Cl:EEB+ bigWig acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward 1 1407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aEEB.CNhs13059.10835-111D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10835-111D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EEB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF291YJW ENCSR006GAQ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF10 KLF10 ENCSR006GAQ signal 2 1407 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/df57ce75-3325-4b87-a40c-064117bd30a8/ENCFF291YJW.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF10 KLF10 ENCSR006GAQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR006GAQ Signal\ track wgEncodeReg4TfChip_ENCFF291YJW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF640KDD ENCSR134CIY Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak 4 1407 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/d2d98556-be0a-4deb-a3e7-76fbcd7e7eeb/ENCFF640KDD.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR134CIY Peak\ track wgEncodeReg4Epigenetics_ENCFF640KDD\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_rev Cl:EEB- bigWig acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_reverse 0 1408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aEEB.CNhs13059.10835-111D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10835-111D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EEB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_tpm_rev Cl:EEB- bigWig acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_reverse 1 1408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aEEB.CNhs13059.10835-111D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:EEB_CNhs13059_10835-111D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10835-111D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EEB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineEEB_CNhs13059_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10835-111D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF232JNU ENCSR006WUS Peak bigBed 5 MCF-7 NEUROD1 peaks 4 1408 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/1f208891-92c2-46d1-8998-f402ad6d5034/ENCFF232JNU.bigBed\ labelFields none\ longLabel MCF-7 NEUROD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR006WUS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF232JNU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF166XFX ENCSR134CIY Signal bigWig Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal 2 1408 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/6abe1ab3-4fed-473b-a4e8-63b5bef05d92/ENCFF166XFX.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR134CIY Signal\ track wgEncodeReg4Epigenetics_ENCFF166XFX\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_fwd Cl:EoL-1+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward 0 1409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_fwd Cl:EoL-1+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward 1 1409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF285GEQ ENCSR008LHT Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ISL1 ISL1 peaks 4 1409 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/fa5bc6b5-55e5-40a0-855f-310bf61fb0e5/ENCFF285GEQ.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ISL1 ISL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR008LHT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF285GEQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF363BJF ENCSR134IUJ Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 1409 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/6ef863bd-4449-4db7-a49b-c4e83d1d361a/ENCFF363BJF.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR134IUJ Peak\ track wgEncodeReg4Epigenetics_ENCFF363BJF\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_rev Cl:EoL-1- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse 0 1410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_rev Cl:EoL-1- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse 1 1410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-1.CNhs13056.10832-111D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-1_CNhs13056_10832-111D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10832-111D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL1_CNhs13056_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10832-111D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF168BYR ENCSR008LHT Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ISL1 ISL1 ENCSR008LHT signal 2 1410 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/9b4c47c4-ccce-4dcc-97cd-e825e58c5b8c/ENCFF168BYR.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ISL1 ISL1 ENCSR008LHT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR008LHT Signal\ track wgEncodeReg4TfChip_ENCFF168BYR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF357PGY ENCSR134IUJ Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 1410 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/b775ed95-a7ef-48c8-a90e-a22b55c39dfb/ENCFF357PGY.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR134IUJ Signal\ track wgEncodeReg4Epigenetics_ENCFF357PGY\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_fwd Cl:EoL-3+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward 0 1411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_fwd Cl:EoL-3+ bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward 1 1411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF969FFI ENCSR009KLQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF16 KLF16 peaks 4 1411 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ac7940a8-65df-4ec9-b1b1-e6cd2cfddc55/ENCFF969FFI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF16 KLF16 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR009KLQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF969FFI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF595DFE ENCSR134OSR Peak bigBed 5 GM19438 ATAC peak 4 1411 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/97062f91-45f3-499b-851e-c5b49d171edf/ENCFF595DFE.bigBed\ color 2,199,185\ longLabel GM19438 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR134OSR Peak\ track wgEncodeReg4Epigenetics_ENCFF595DFE\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_rev Cl:EoL-3- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse 0 1412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:EoL-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_rev Cl:EoL-3- bigWig acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse 1 1412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4eo%29%20cell%20line%3aEoL-3.CNhs13057.10833-111D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4eo) cell line:EoL-3_CNhs13057_10833-111D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10833-111D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:EoL-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4eoCellLineEoL3_CNhs13057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10833-111D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF322LCF ENCSR009KLQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF16 KLF16 ENCSR009KLQ signal 2 1412 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/cf0bf70e-3171-4ec9-91f4-2e0744e48e78/ENCFF322LCF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF16 KLF16 ENCSR009KLQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR009KLQ Signal\ track wgEncodeReg4TfChip_ENCFF322LCF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF946NPR ENCSR134OSR Signal bigWig GM19438 ATAC signal 2 1412 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/b9a0aa85-3fc1-4798-8c81-b055ffe54eae/ENCFF946NPR.bigWig\ color 2,199,185\ longLabel GM19438 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR134OSR Signal\ track wgEncodeReg4Epigenetics_ENCFF946NPR\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_fwd Cl:F-36E+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward 0 1413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36E+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_fwd Cl:F-36E+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward 1 1413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36E+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF845UGP ENCSR009MBP Peak bigBed 5 GM12878 HSF1 peaks 4 1413 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/2219174f-1df3-4c85-a64e-d7cab0126a7a/ENCFF845UGP.bigBed\ labelFields none\ longLabel GM12878 HSF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR009MBP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF845UGP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF541HHW ENCSR135AYC Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 1413 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/fc2b0696-d058-4796-8ffc-9874b7417cbc/ENCFF541HHW.bigBed\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135AYC Peak\ track wgEncodeReg4Epigenetics_ENCFF541HHW\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_rev Cl:F-36E- bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse 0 1414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36E-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_rev Cl:F-36E- bigWig acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse 1 1414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36E.CNhs13060.10836-111D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36E_CNhs13060_10836-111D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10836-111D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36E-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36E_CNhs13060_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10836-111D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF428HGS ENCSR009MBP Signal bigWig GM12878 HSF1 ENCSR009MBP signal 2 1414 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e641358c-af1c-4411-b02d-af6ed2980262/ENCFF428HGS.bigWig\ color 254,75,173\ longLabel GM12878 HSF1 ENCSR009MBP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR009MBP Signal\ track wgEncodeReg4TfChip_ENCFF428HGS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF543PRC ENCSR135AYC Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 1414 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/72195a31-eac5-4645-b79f-6a19a093195e/ENCFF543PRC.bigWig\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135AYC Signal\ track wgEncodeReg4Epigenetics_ENCFF543PRC\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_fwd Cl:F-36P+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward 0 1415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36P+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_fwd Cl:F-36P+ bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward 1 1415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36P+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF518EXB ENCSR009TKN Peak bigBed 5 SK-N-SH RCOR1 peaks 4 1415 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/292b2365-8d37-4bd9-b4fc-882ea806000c/ENCFF518EXB.bigBed\ labelFields none\ longLabel SK-N-SH RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR009TKN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF518EXB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF303ZZB ENCSR135GZX Peak bigBed 5 Heart left ventricle tissue male adult 43 years H3K4me3 peak 4 1415 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6667cb72-1d84-4f29-b839-6cb25a648c9f/ENCFF303ZZB.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 43 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135GZX Peak\ track wgEncodeReg4Epigenetics_ENCFF303ZZB\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_rev Cl:F-36P- bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse 0 1416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:F-36P-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_rev Cl:F-36P- bigWig acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse 1 1416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M6%29%20cell%20line%3aF-36P.CNhs13505.10837-111D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M6) cell line:F-36P_CNhs13505_10837-111D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10837-111D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:F-36P-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM6CellLineF36P_CNhs13505_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10837-111D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF290BPX ENCSR009TKN Signal bigWig SK-N-SH RCOR1 ENCSR009TKN signal 2 1416 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/c223cd79-9ead-4326-aac8-ae3717ef29f9/ENCFF290BPX.bigWig\ color 155,155,18\ longLabel SK-N-SH RCOR1 ENCSR009TKN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR009TKN Signal\ track wgEncodeReg4TfChip_ENCFF290BPX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF155GED ENCSR135GZX Signal bigWig Heart left ventricle tissue male adult 43 years H3K4me3 signal 2 1416 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/d23c6768-fb83-4331-a492-014bdf08c4db/ENCFF155GED.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 43 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135GZX Signal\ track wgEncodeReg4Epigenetics_ENCFF155GED\ type bigWig\ visibility full\ NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_ctss_fwd Cl:FHs74Int+ bigWig normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward 0 1417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20intestinal%20epithelial%20cell%20line%3aFHs%2074%20Int.CNhs11950.10812-111B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10812-111B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FHs74Int+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2\ urlLabel FANTOM5 Details:\ NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_tpm_fwd Cl:FHs74Int+ bigWig normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward 1 1417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20intestinal%20epithelial%20cell%20line%3aFHs%2074%20Int.CNhs11950.10812-111B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10812-111B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FHs74Int+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF677IUD ENCSR011CIR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF614 ZNF614 peaks 4 1417 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/57e22767-d26b-4eff-a7c8-ab7e9768d53e/ENCFF677IUD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF614 ZNF614 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011CIR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF677IUD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF541OPJ ENCSR135OML Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak 4 1417 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/6bc17efb-afc3-44f9-a4d3-8d0f68f237d5/ENCFF541OPJ.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135OML Peak\ track wgEncodeReg4Epigenetics_ENCFF541OPJ\ type bigBed 5\ visibility squish\ NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_ctss_rev Cl:FHs74Int- bigWig normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_reverse 0 1418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20intestinal%20epithelial%20cell%20line%3aFHs%2074%20Int.CNhs11950.10812-111B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10812-111B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FHs74Int-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2\ urlLabel FANTOM5 Details:\ NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_tpm_rev Cl:FHs74Int- bigWig normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_reverse 1 1418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20intestinal%20epithelial%20cell%20line%3aFHs%2074%20Int.CNhs11950.10812-111B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel normal intestinal epithelial cell line:FHs 74 Int_CNhs11950_10812-111B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10812-111B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FHs74Int-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NormalIntestinalEpithelialCellLineFHs74Int_CNhs11950_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10812-111B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF163AFY ENCSR011CIR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF614 ZNF614 ENCSR011CIR signal 2 1418 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/1d89cf60-938d-40b0-930a-58a11bc9b992/ENCFF163AFY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF614 ZNF614 ENCSR011CIR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011CIR Signal\ track wgEncodeReg4TfChip_ENCFF163AFY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF734KNW ENCSR135OML Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal 2 1418 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/aa5f5bda-9066-4818-8109-ba84d482cde3/ENCFF734KNW.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135OML Signal\ track wgEncodeReg4Epigenetics_ENCFF734KNW\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_ctss_fwd Cl:FKH-1+ bigWig acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_forward 0 1419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aFKH-1.CNhs13503.10830-111D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10830-111D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FKH-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_tpm_fwd Cl:FKH-1+ bigWig acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_forward 1 1419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aFKH-1.CNhs13503.10830-111D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10830-111D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FKH-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF641ICT ENCSR011CKE Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF2 ZNF2 peaks 4 1419 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/ef6a9220-a7f1-4ffe-8337-ebb93f77615f/ENCFF641ICT.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF2 ZNF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011CKE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF641ICT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF909YIZ ENCSR135XMY Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase pea 4 1419 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/4e1f1ee8-b788-4c60-8c29-0ef162ee0a0a/ENCFF909YIZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135XMY Peak\ track wgEncodeReg4Epigenetics_ENCFF909YIZ\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_ctss_rev Cl:FKH-1- bigWig acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_reverse 0 1420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aFKH-1.CNhs13503.10830-111D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10830-111D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FKH-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_tpm_rev Cl:FKH-1- bigWig acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_reverse 1 1420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aFKH-1.CNhs13503.10830-111D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4) cell line:FKH-1_CNhs13503_10830-111D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10830-111D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FKH-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4CellLineFKH1_CNhs13503_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10830-111D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF150SKX ENCSR011CKE Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF2 ZNF2 ENCSR011CKE signal 2 1420 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/df9bfec1-ac4b-4307-a939-8dbbbcc710d9/ENCFF150SKX.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF2 ZNF2 ENCSR011CKE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011CKE Signal\ track wgEncodeReg4TfChip_ENCFF150SKX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF948OGL ENCSR135XMY Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase sig 2 1420 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/4b0bbab4-a958-4b08-a176-4ed054cfcc09/ENCFF948OGL.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR135XMY Signal\ track wgEncodeReg4Epigenetics_ENCFF948OGL\ type bigWig\ visibility full\ NeuroectodermalTumorCellLineFURPNT1_CNhs11744_ctss_fwd Cl:FU-RPNT-1+ bigWig neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_forward 0 1421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-1.CNhs11744.10637-108I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10637-108I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FU-RPNT-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroectodermalTumorCellLineFURPNT1_CNhs11744_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7\ urlLabel FANTOM5 Details:\ NeuroectodermalTumorCellLineFURPNT1_CNhs11744_tpm_fwd Cl:FU-RPNT-1+ bigWig neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_forward 1 1421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-1.CNhs11744.10637-108I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10637-108I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FU-RPNT-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroectodermalTumorCellLineFURPNT1_CNhs11744_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF259LUZ ENCSR011INW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM15 PRDM15 peaks 4 1421 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/589a16d3-fcaa-400d-8a1b-e1235e763daa/ENCFF259LUZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM15 PRDM15 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011INW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF259LUZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF106RJB ENCSR136KEL Peak bigBed 5 Kidney glomerular epithelial cell male adult 43 years and male adult 62 years DNase peak 4 1421 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/35d3b6a3-bb97-406e-b006-61e34fd26945/ENCFF106RJB.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney glomerular epithelial cell male adult 43 years and male adult 62 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136KEL Peak\ track wgEncodeReg4Epigenetics_ENCFF106RJB\ type bigBed 5\ visibility squish\ NeuroectodermalTumorCellLineFURPNT1_CNhs11744_ctss_rev Cl:FU-RPNT-1- bigWig neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_reverse 0 1422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-1.CNhs11744.10637-108I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10637-108I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FU-RPNT-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineFURPNT1_CNhs11744_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7\ urlLabel FANTOM5 Details:\ NeuroectodermalTumorCellLineFURPNT1_CNhs11744_tpm_rev Cl:FU-RPNT-1- bigWig neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_reverse 1 1422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-1.CNhs11744.10637-108I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:FU-RPNT-1_CNhs11744_10637-108I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10637-108I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FU-RPNT-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineFURPNT1_CNhs11744_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10637-108I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF238VAI ENCSR011INW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM15 PRDM15 ENCSR011INW signal 2 1422 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/f61296fa-32b5-449c-a29e-fb01a576b49d/ENCFF238VAI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM15 PRDM15 ENCSR011INW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011INW Signal\ track wgEncodeReg4TfChip_ENCFF238VAI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF203ZGZ ENCSR136KEL Signal bigWig Kidney glomerular epithelial cell male adult 43 years and male adult 62 years DNase signal 2 1422 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/15466259-ca5b-48d2-87e3-2c3e3d991876/ENCFF203ZGZ.bigWig\ color 6,218,147\ longLabel Kidney glomerular epithelial cell male adult 43 years and male adult 62 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136KEL Signal\ track wgEncodeReg4Epigenetics_ENCFF203ZGZ\ type bigWig\ visibility full\ NeuroectodermalTumorCellLineFURPNT2_CNhs11753_ctss_fwd Cl:FU-RPNT-2+ bigWig neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_forward 0 1423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-2.CNhs11753.10663-109C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10663-109C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FU-RPNT-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroectodermalTumorCellLineFURPNT2_CNhs11753_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6\ urlLabel FANTOM5 Details:\ NeuroectodermalTumorCellLineFURPNT2_CNhs11753_tpm_fwd Cl:FU-RPNT-2+ bigWig neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_forward 1 1423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-2.CNhs11753.10663-109C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10663-109C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FU-RPNT-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroectodermalTumorCellLineFURPNT2_CNhs11753_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF568QZW ENCSR011NOZ Peak bigBed 5 K562 ZNF407 peaks 4 1423 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/d085715a-10af-44ac-8410-58b744807986/ENCFF568QZW.bigBed\ labelFields none\ longLabel K562 ZNF407 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011NOZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF568QZW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF986PCC ENCSR136KIM Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K27ac peak 4 1423 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/1c1757c2-a610-4872-b85c-3632fcc041cf/ENCFF986PCC.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136KIM Peak\ track wgEncodeReg4Epigenetics_ENCFF986PCC\ type bigBed 5\ visibility squish\ NeuroectodermalTumorCellLineFURPNT2_CNhs11753_ctss_rev Cl:FU-RPNT-2- bigWig neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse 0 1424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-2.CNhs11753.10663-109C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10663-109C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:FU-RPNT-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineFURPNT2_CNhs11753_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6\ urlLabel FANTOM5 Details:\ NeuroectodermalTumorCellLineFURPNT2_CNhs11753_tpm_rev Cl:FU-RPNT-2- bigWig neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse 1 1424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aFU-RPNT-2.CNhs11753.10663-109C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:FU-RPNT-2_CNhs11753_10663-109C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10663-109C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:FU-RPNT-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineFURPNT2_CNhs11753_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10663-109C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF540PNG ENCSR011NOZ Signal bigWig K562 ZNF407 ENCSR011NOZ signal 2 1424 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/d93ae61c-ebda-4e5b-98ca-601144090cad/ENCFF540PNG.bigWig\ color 254,75,173\ longLabel K562 ZNF407 ENCSR011NOZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011NOZ Signal\ track wgEncodeReg4TfChip_ENCFF540PNG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF419XHK ENCSR136KIM Signal bigWig Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K27ac signal 2 1424 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/d09a258d-fa22-4524-b637-e704ebbb4d68/ENCFF419XHK.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136KIM Signal\ track wgEncodeReg4Epigenetics_ENCFF419XHK\ type bigWig\ visibility full\ MelanomaCellLineG361_CNhs11254_ctss_fwd Cl:G-361+ bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_forward 0 1425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-361+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineG361_CNhs11254_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ MelanomaCellLineG361_CNhs11254_tpm_fwd Cl:G-361+ bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_forward 1 1425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-361+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MelanomaCellLineG361_CNhs11254_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF497AEJ ENCSR011PEI Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF175 ZNF175 peaks 4 1425 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/72512d9a-6d04-4050-bdae-a7c3c6086231/ENCFF497AEJ.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF175 ZNF175 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011PEI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF497AEJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF362ZNP ENCSR136QKZ Peak bigBed 5 Common myeloid progenitor, CD34-positive female adult 33 years H3K4me3 peak 4 1425 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/81a18aa0-9d22-418a-b4bf-85945968c243/ENCFF362ZNP.bigBed\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive female adult 33 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136QKZ Peak\ track wgEncodeReg4Epigenetics_ENCFF362ZNP\ type bigBed 5\ visibility squish\ MelanomaCellLineG361_CNhs11254_ctss_rev Cl:G-361- bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_reverse 0 1426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-361-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineG361_CNhs11254_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ MelanomaCellLineG361_CNhs11254_tpm_rev Cl:G-361- bigWig melanoma cell line:G-361_CNhs11254_10465-106H6_reverse 1 1426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/melanoma%20cell%20line%3aG-361.CNhs11254.10465-106H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel melanoma cell line:G-361_CNhs11254_10465-106H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10465-106H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-361-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MelanomaCellLineG361_CNhs11254_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10465-106H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF657XIZ ENCSR011XCI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF585B ZNF585B peaks 4 1426 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/e31a1136-b379-409e-9cd0-1ed8f065c801/ENCFF657XIZ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF585B ZNF585B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011XCI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF657XIZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF156DEQ ENCSR136QKZ Signal bigWig Common myeloid progenitor, CD34-positive female adult 33 years H3K4me3 signal 2 1426 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/dd61bd1e-ec21-44d3-84f3-8992be8cec77/ENCFF156DEQ.bigWig\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive female adult 33 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136QKZ Signal\ track wgEncodeReg4Epigenetics_ENCFF156DEQ\ type bigWig\ visibility full\ WilmsTumorCellLineG401_CNhs11892_ctss_fwd Cl:G-401+ bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward 0 1427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-401+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track WilmsTumorCellLineG401_CNhs11892_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ WilmsTumorCellLineG401_CNhs11892_tpm_fwd Cl:G-401+ bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward 1 1427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-401+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track WilmsTumorCellLineG401_CNhs11892_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF443DVI ENCSR011XCI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF585B ZNF585B ENCSR011XCI signal 2 1427 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/ec2a40f3-1ca9-4975-ad53-cbfb7e9cdf8f/ENCFF443DVI.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF585B ZNF585B ENCSR011XCI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR011XCI Signal\ track wgEncodeReg4TfChip_ENCFF443DVI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF279AYQ ENCSR136ZQZ Peak bigBed 5 Testis tissue male adult 37 years H3K27ac peak 4 1427 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/04479e57-bfb0-474f-8280-ed47a8e64eff/ENCFF279AYQ.bigBed\ color 181,145,0\ longLabel Testis tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136ZQZ Peak\ track wgEncodeReg4Epigenetics_ENCFF279AYQ\ type bigBed 5\ visibility squish\ WilmsTumorCellLineG401_CNhs11892_ctss_rev Cl:G-401- bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse 0 1428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-401-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track WilmsTumorCellLineG401_CNhs11892_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ WilmsTumorCellLineG401_CNhs11892_tpm_rev Cl:G-401- bigWig Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse 1 1428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aG-401.CNhs11892.10809-111A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Wilms' tumor cell line:G-401_CNhs11892_10809-111A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10809-111A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-401-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track WilmsTumorCellLineG401_CNhs11892_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10809-111A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF351OZU ENCSR013DKM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530 ZNF530 peaks 4 1428 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/10c14295-4df7-458c-a730-94c28ff421c6/ENCFF351OZU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530 ZNF530 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR013DKM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF351OZU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF487SXN ENCSR136ZQZ Signal bigWig Testis tissue male adult 37 years H3K27ac signal 2 1428 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/80e7dd44-801b-48a3-beec-a80b67f9a128/ENCFF487SXN.bigWig\ color 181,145,0\ longLabel Testis tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR136ZQZ Signal\ track wgEncodeReg4Epigenetics_ENCFF487SXN\ type bigWig\ visibility full\ LeiomyoblastomaCellLineG402_CNhs11848_ctss_fwd Cl:G-402+ bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward 0 1429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-402+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyoblastomaCellLineG402_CNhs11848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ LeiomyoblastomaCellLineG402_CNhs11848_tpm_fwd Cl:G-402+ bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward 1 1429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-402+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeiomyoblastomaCellLineG402_CNhs11848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF140JKC ENCSR013DKM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530 ZNF530 ENCSR013DKM signal 2 1429 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/f7a24537-ed75-4933-898d-0dd4da760e31/ENCFF140JKC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530 ZNF530 ENCSR013DKM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR013DKM Signal\ track wgEncodeReg4TfChip_ENCFF140JKC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF435FTH ENCSR137FWW Peak bigBed 5 Head of caudate nucleus tissue male adult 90 or above years DNase peak 4 1429 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/e90b073b-ccbf-4f8a-8eb1-32e6bb35d636/ENCFF435FTH.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR137FWW Peak\ track wgEncodeReg4Epigenetics_ENCFF435FTH\ type bigBed 5\ visibility squish\ LeiomyoblastomaCellLineG402_CNhs11848_ctss_rev Cl:G-402- bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse 0 1430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:G-402-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyoblastomaCellLineG402_CNhs11848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ LeiomyoblastomaCellLineG402_CNhs11848_tpm_rev Cl:G-402- bigWig leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse 1 1430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leiomyoblastoma%20cell%20line%3aG-402.CNhs11848.10721-110A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leiomyoblastoma cell line:G-402_CNhs11848_10721-110A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10721-110A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:G-402-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeiomyoblastomaCellLineG402_CNhs11848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10721-110A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF629CDJ ENCSR013RNH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F2 E2F2 peaks 4 1430 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/31024c37-a5be-4b1a-bb9f-29a1c7e28d90/ENCFF629CDJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F2 E2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR013RNH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF629CDJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF302EVI ENCSR137FWW Signal bigWig Head of caudate nucleus tissue male adult 90 or above years DNase signal 2 1430 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/a7e169c4-5408-43df-9dec-00bab93f10b1/ENCFF302EVI.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR137FWW Signal\ track wgEncodeReg4Epigenetics_ENCFF302EVI\ type bigWig\ visibility full\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_fwd Cl:GCTTIB-223+ bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward 0 1431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GCTTIB-223+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_fwd Cl:GCTTIB-223+ bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward 1 1431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GCTTIB-223+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF826PYA ENCSR013RNH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F2 E2F2 ENCSR013RNH signal 2 1431 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d5849092-2c55-4299-9e2a-15f76863842f/ENCFF826PYA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F2 E2F2 ENCSR013RNH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR013RNH Signal\ track wgEncodeReg4TfChip_ENCFF826PYA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF479ZUR ENCSR137UJW Peak bigBed 5 Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours H3K4me3 peak 4 1431 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/e3135863-279f-4d15-b419-7a8301e37861/ENCFF479ZUR.bigBed\ color 255,0,0\ longLabel Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR137UJW Peak\ track wgEncodeReg4Epigenetics_ENCFF479ZUR\ type bigBed 5\ visibility squish\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_rev Cl:GCTTIB-223- bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse 0 1432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GCTTIB-223-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_rev Cl:GCTTIB-223- bigWig fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse 1 1432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrous%20histiocytoma%20cell%20line%3aGCT%20TIB-223.CNhs11842.10711-109H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel fibrous histiocytoma cell line:GCT TIB-223_CNhs11842_10711-109H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10711-109H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GCTTIB-223-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrousHistiocytomaCellLineGCTTIB223_CNhs11842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10711-109H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF282ZUL ENCSR014GSQ Peak bigBed 5 Adrenal gland tissue female adult (51 years) CTCF peaks 4 1432 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/853a4e2d-3389-4799-9821-0eb4e162079a/ENCFF282ZUL.bigBed\ labelFields none\ longLabel Adrenal gland tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR014GSQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF282ZUL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF356TWG ENCSR137UJW Signal bigWig Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours H3K4me3 signal 2 1432 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/d1f19f6f-c830-46fc-8409-7ebfa9704b2d/ENCFF356TWG.bigWig\ color 255,0,0\ longLabel Activated T-cell male adult 42 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR137UJW Signal\ track wgEncodeReg4Epigenetics_ENCFF356TWG\ type bigWig\ visibility full\ GliomaCellLineGI1_CNhs10731_ctss_fwd Cl:GI-1+ bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_forward 0 1433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GI-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GliomaCellLineGI1_CNhs10731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_tpm_fwd Cl:GI-1+ bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_forward 1 1433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GI-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GliomaCellLineGI1_CNhs10731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF673UYG ENCSR014GSQ Signal bigWig Adrenal gland tissue female adult (51 years) CTCF ENCSR014GSQ signal 2 1433 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/03fcc685-564f-49d2-8856-0f234bb5c3e2/ENCFF673UYG.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (51 years) CTCF ENCSR014GSQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR014GSQ Signal\ track wgEncodeReg4TfChip_ENCFF673UYG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF610TIX ENCSR137ZID Peak bigBed 5 Pancreas tissue female adult 41 years H3K27ac peak 4 1433 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/64a505b7-1cfd-458d-9cdc-7e3252ecfb08/ENCFF610TIX.bigBed\ color 181,145,0\ longLabel Pancreas tissue female adult 41 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR137ZID Peak\ track wgEncodeReg4Epigenetics_ENCFF610TIX\ type bigBed 5\ visibility squish\ GliomaCellLineGI1_CNhs10731_ctss_rev Cl:GI-1- bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_reverse 0 1434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GI-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GliomaCellLineGI1_CNhs10731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ GliomaCellLineGI1_CNhs10731_tpm_rev Cl:GI-1- bigWig glioma cell line:GI-1_CNhs10731_10413-106B8_reverse 1 1434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioma%20cell%20line%3aGI-1.CNhs10731.10413-106B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel glioma cell line:GI-1_CNhs10731_10413-106B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10413-106B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GI-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GliomaCellLineGI1_CNhs10731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10413-106B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF954RNO ENCSR014RCS Peak bigBed 5 K562 HNRNPK peaks 4 1434 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/af666d68-89bd-4e19-b8e2-c114f7d6579e/ENCFF954RNO.bigBed\ labelFields none\ longLabel K562 HNRNPK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR014RCS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF954RNO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF859IVY ENCSR137ZID Signal bigWig Pancreas tissue female adult 41 years H3K27ac signal 2 1434 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/3f62165d-236b-44bf-95e8-2850d008b7ef/ENCFF859IVY.bigWig\ color 181,145,0\ longLabel Pancreas tissue female adult 41 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR137ZID Signal\ track wgEncodeReg4Epigenetics_ENCFF859IVY\ type bigWig\ visibility full\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_fwd Cl:GM12878Br1+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward 0 1435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_fwd Cl:GM12878Br1+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward 1 1435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF639KRR ENCSR014RCS Signal bigWig K562 HNRNPK ENCSR014RCS signal 2 1435 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e445bc8e-c0af-4b0e-98b0-acd011077cbc/ENCFF639KRR.bigWig\ color 254,75,173\ longLabel K562 HNRNPK ENCSR014RCS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR014RCS Signal\ track wgEncodeReg4TfChip_ENCFF639KRR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF853AWB ENCSR138DOM Peak bigBed 5 CD4-positive, alpha-beta T cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac peak 4 1435 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/58913adc-9a3b-4baa-b198-ca549bd8d48d/ENCFF853AWB.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta T cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138DOM Peak\ track wgEncodeReg4Epigenetics_ENCFF853AWB\ type bigBed 5\ visibility squish\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_rev Cl:GM12878Br1- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse 0 1436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_rev Cl:GM12878Br1- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse 1 1436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep1.CNhs12331.10821-111C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep1_CNhs12331_10821-111C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10821-111C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep1_CNhs12331_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10821-111C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF037PYH ENCSR014YCR Peak bigBed 5 GM12878 ATF7 peaks 4 1436 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/0e0ba96c-65f4-4e6e-8249-efa1f6970bd4/ENCFF037PYH.bigBed\ labelFields none\ longLabel GM12878 ATF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR014YCR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF037PYH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF694IFY ENCSR138DOM Signal bigWig CD4-positive, alpha-beta T cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac signal 2 1436 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/18a1d351-15cd-421d-93fc-05cd9c8de201/ENCFF694IFY.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta T cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138DOM Signal\ track wgEncodeReg4Epigenetics_ENCFF694IFY\ type bigWig\ visibility full\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_fwd Cl:GM12878Br2+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward 0 1437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_fwd Cl:GM12878Br2+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward 1 1437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF927POV ENCSR015LYB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HIC2 HIC2 peaks 4 1437 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/4fd5701a-5b03-4b45-8313-650710c45a82/ENCFF927POV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HIC2 HIC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR015LYB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF927POV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF873YHP ENCSR138ITT Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 1437 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/77e37d5e-3541-4df8-96be-965f75f2669f/ENCFF873YHP.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138ITT Peak\ track wgEncodeReg4Epigenetics_ENCFF873YHP\ type bigBed 5\ visibility squish\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_rev Cl:GM12878Br2- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse 0 1438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_rev Cl:GM12878Br2- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse 1 1438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep2.CNhs12332.10822-111C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep2_CNhs12332_10822-111C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10822-111C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep2_CNhs12332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10822-111C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF614JHL ENCSR015LYB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HIC2 HIC2 ENCSR015LYB signal 2 1438 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/484263ec-33a1-4e1a-8046-207da5c00a9e/ENCFF614JHL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HIC2 HIC2 ENCSR015LYB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR015LYB Signal\ track wgEncodeReg4TfChip_ENCFF614JHL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF742ERW ENCSR138ITT Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 1438 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/06520c60-9ee0-40a8-86ae-7178e1e86870/ENCFF742ERW.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138ITT Signal\ track wgEncodeReg4Epigenetics_ENCFF742ERW\ type bigWig\ visibility full\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_fwd Cl:GM12878Br3+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward 0 1439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_fwd Cl:GM12878Br3+ bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward 1 1439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF610UQP ENCSR016BMM Peak bigBed 5 Liver tissue female child (4 years) TAF1 peaks 4 1439 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/f433e8e3-6e7a-44cf-83a5-f0f63e9df9d6/ENCFF610UQP.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR016BMM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF610UQP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF881WAS ENCSR138TQF Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 1439 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/4ea44932-72da-4d74-b883-7ac66257042c/ENCFF881WAS.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138TQF Peak\ track wgEncodeReg4Epigenetics_ENCFF881WAS\ type bigBed 5\ visibility squish\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_rev Cl:GM12878Br3- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse 0 1440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GM12878Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_rev Cl:GM12878Br3- bigWig B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse 1 1440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/B%20lymphoblastoid%20cell%20line%3a%20GM12878%20ENCODE%2c%20biol_rep3.CNhs12333.10823-111C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel B lymphoblastoid cell line: GM12878 ENCODE, biol_rep3_CNhs12333_10823-111C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10823-111C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GM12878Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BLymphoblastoidCellLineGM12878ENCODEBiolRep3_CNhs12333_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10823-111C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF088LLC ENCSR016BMM Signal bigWig Liver tissue female child (4 years) TAF1 ENCSR016BMM signal 2 1440 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/e7bcc8b9-e5ba-4ad3-baff-13a0f394fa81/ENCFF088LLC.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) TAF1 ENCSR016BMM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR016BMM Signal\ track wgEncodeReg4TfChip_ENCFF088LLC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF694XDN ENCSR138TQF Signal bigWig Middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 1440 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/724ab563-4f12-4612-b5b2-3f2502727e3d/ENCFF694XDN.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138TQF Signal\ track wgEncodeReg4Epigenetics_ENCFF694XDN\ type bigWig\ visibility full\ GastricCancerCellLineGSS_CNhs14241_ctss_fwd Cl:GSS+ bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward 0 1441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GSS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricCancerCellLineGSS_CNhs14241_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_tpm_fwd Cl:GSS+ bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward 1 1441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GSS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricCancerCellLineGSS_CNhs14241_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF018ISP ENCSR016OHL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317 ZNF317 peaks 4 1441 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/bc56eaba-6eb5-4d30-a883-f1846870501b/ENCFF018ISP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317 ZNF317 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR016OHL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF018ISP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF853KRA ENCSR138UGH Peak bigBed 5 Ovary tissue female adult 61 years DNase peak 4 1441 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/08b3087e-5cd0-4d7d-867c-ae977184443b/ENCFF853KRA.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 61 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138UGH Peak\ track wgEncodeReg4Epigenetics_ENCFF853KRA\ type bigBed 5\ visibility squish\ GastricCancerCellLineGSS_CNhs14241_ctss_rev Cl:GSS- bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse 0 1442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:GSS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricCancerCellLineGSS_CNhs14241_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ GastricCancerCellLineGSS_CNhs14241_tpm_rev Cl:GSS- bigWig gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse 1 1442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20cancer%20cell%20line%3aGSS.CNhs14241.10560-108A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gastric cancer cell line:GSS_CNhs14241_10560-108A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10560-108A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:GSS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricCancerCellLineGSS_CNhs14241_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10560-108A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF799CNB ENCSR016OHL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317 ZNF317 ENCSR016OHL signal 2 1442 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/cfd76bf6-d17d-44f0-be4b-4e2f6500acd3/ENCFF799CNB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317 ZNF317 ENCSR016OHL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR016OHL Signal\ track wgEncodeReg4TfChip_ENCFF799CNB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF792AMR ENCSR138UGH Signal bigWig Ovary tissue female adult 61 years DNase signal 2 1442 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/e20827f4-3cd3-44bc-bddf-ff5dd37979bb/ENCFF792AMR.bigWig\ color 6,218,147\ longLabel Ovary tissue female adult 61 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR138UGH Signal\ track wgEncodeReg4Epigenetics_ENCFF792AMR\ type bigWig\ visibility full\ ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_ctss_fwd Cl:H-EMC-SS+ bigWig extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_forward 0 1443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/extraskeletal%20myxoid%20chondrosarcoma%20cell%20line%3aH-EMC-SS.CNhs10728.10410-106B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10410-106B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:H-EMC-SS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5\ urlLabel FANTOM5 Details:\ ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_tpm_fwd Cl:H-EMC-SS+ bigWig extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_forward 1 1443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/extraskeletal%20myxoid%20chondrosarcoma%20cell%20line%3aH-EMC-SS.CNhs10728.10410-106B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10410-106B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:H-EMC-SS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF701YIT ENCSR016UEH Peak bigBed 5 GM12878 TARDBP peaks 4 1443 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/39fdd091-7a0b-462d-aac5-c199cef0f5b2/ENCFF701YIT.bigBed\ labelFields none\ longLabel GM12878 TARDBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR016UEH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF701YIT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF629HBE ENCSR139TLA Peak bigBed 5 Ovary tissue female adult 30 years H3K4me3 peak 4 1443 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2023/02/01/05daf835-d9d7-4559-949b-2d9169a5e5cd/ENCFF629HBE.bigBed\ color 255,0,0\ longLabel Ovary tissue female adult 30 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR139TLA Peak\ track wgEncodeReg4Epigenetics_ENCFF629HBE\ type bigBed 5\ visibility squish\ ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_ctss_rev Cl:H-EMC-SS- bigWig extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_reverse 0 1444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/extraskeletal%20myxoid%20chondrosarcoma%20cell%20line%3aH-EMC-SS.CNhs10728.10410-106B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10410-106B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:H-EMC-SS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5\ urlLabel FANTOM5 Details:\ ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_tpm_rev Cl:H-EMC-SS- bigWig extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_reverse 1 1444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/extraskeletal%20myxoid%20chondrosarcoma%20cell%20line%3aH-EMC-SS.CNhs10728.10410-106B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS_CNhs10728_10410-106B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10410-106B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:H-EMC-SS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ExtraskeletalMyxoidChondrosarcomaCellLineHEMCSS_CNhs10728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10410-106B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF926QFA ENCSR016UEH Signal bigWig GM12878 TARDBP ENCSR016UEH signal 2 1444 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8d242d6d-a596-4712-ab45-4c311a4e24dc/ENCFF926QFA.bigWig\ color 254,75,173\ longLabel GM12878 TARDBP ENCSR016UEH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR016UEH Signal\ track wgEncodeReg4TfChip_ENCFF926QFA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF942ORX ENCSR139TLA Signal bigWig Ovary tissue female adult 30 years H3K4me3 signal 2 1444 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-private.s3.amazonaws.com/2020/10/10/b7fd26ce-7071-4c14-837c-c1083a990c57/ENCFF942ORX.bigWig\ color 255,0,0\ longLabel Ovary tissue female adult 30 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR139TLA Signal\ track wgEncodeReg4Epigenetics_ENCFF942ORX\ type bigWig\ visibility full\ AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_ctss_fwd Cl:HCC1806+ bigWig acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_forward 0 1445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acantholytic%20squamous%20carcinoma%20cell%20line%3aHCC1806.CNhs11844.10717-109I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10717-109I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HCC1806+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6\ urlLabel FANTOM5 Details:\ AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_tpm_fwd Cl:HCC1806+ bigWig acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_forward 1 1445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acantholytic%20squamous%20carcinoma%20cell%20line%3aHCC1806.CNhs11844.10717-109I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10717-109I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HCC1806+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF779ATB ENCSR017CEO Peak bigBed 5 MCF-7 CUX1 peaks 4 1445 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/416dc7cd-99b9-4564-bab7-67ea0cb417fb/ENCFF779ATB.bigBed\ labelFields none\ longLabel MCF-7 CUX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017CEO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF779ATB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF561BCX ENCSR139UDI Peak bigBed 5 Natural killer cell male adult 33 years H3K4me3 peak 4 1445 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/cd5f9cc1-d5d6-4654-aa77-59003df87491/ENCFF561BCX.bigBed\ color 255,0,0\ longLabel Natural killer cell male adult 33 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR139UDI Peak\ track wgEncodeReg4Epigenetics_ENCFF561BCX\ type bigBed 5\ visibility squish\ AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_ctss_rev Cl:HCC1806- bigWig acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_reverse 0 1446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acantholytic%20squamous%20carcinoma%20cell%20line%3aHCC1806.CNhs11844.10717-109I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10717-109I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HCC1806-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6\ urlLabel FANTOM5 Details:\ AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_tpm_rev Cl:HCC1806- bigWig acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_reverse 1 1446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acantholytic%20squamous%20carcinoma%20cell%20line%3aHCC1806.CNhs11844.10717-109I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acantholytic squamous carcinoma cell line:HCC1806_CNhs11844_10717-109I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10717-109I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HCC1806-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcantholyticSquamousCarcinomaCellLineHCC1806_CNhs11844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10717-109I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF735AMN ENCSR017CEO Signal bigWig MCF-7 CUX1 ENCSR017CEO signal 2 1446 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/f86f3964-1939-4caa-a983-cc624db65f90/ENCFF735AMN.bigWig\ color 65,171,173\ longLabel MCF-7 CUX1 ENCSR017CEO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017CEO Signal\ track wgEncodeReg4TfChip_ENCFF735AMN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF070QLD ENCSR139UDI Signal bigWig Natural killer cell male adult 33 years H3K4me3 signal 2 1446 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/2c85c23a-3881-4a19-83db-26eed828b8f4/ENCFF070QLD.bigWig\ color 255,0,0\ longLabel Natural killer cell male adult 33 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR139UDI Signal\ track wgEncodeReg4Epigenetics_ENCFF070QLD\ type bigWig\ visibility full\ SmallCellCervicalCancerCellLineHCSC1_CNhs11885_ctss_fwd Cl:HCSC-1+ bigWig small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_forward 0 1447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20cervical%20cancer%20cell%20line%3aHCSC-1.CNhs11885.10800-110I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10800-110I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HCSC-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellCervicalCancerCellLineHCSC1_CNhs11885_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8\ urlLabel FANTOM5 Details:\ SmallCellCervicalCancerCellLineHCSC1_CNhs11885_tpm_fwd Cl:HCSC-1+ bigWig small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_forward 1 1447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20cervical%20cancer%20cell%20line%3aHCSC-1.CNhs11885.10800-110I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10800-110I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HCSC-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellCervicalCancerCellLineHCSC1_CNhs11885_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF794ZXJ ENCSR017GBO Peak bigBed 5 K562 stably expressing TFDP1 TFDP1 peaks 4 1447 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/03b7196c-7a40-4e86-8d8e-0cd753222e35/ENCFF794ZXJ.bigBed\ labelFields none\ longLabel K562 stably expressing TFDP1 TFDP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017GBO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF794ZXJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF379IBF ENCSR141CRA Peak bigBed 5 T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody, 100 ng/mL Interleukin-4 H3K4me3 peak 4 1447 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/d2b1adf4-ecb2-433e-bfc9-d408ac1d3d8c/ENCFF379IBF.bigBed\ color 255,0,0\ longLabel T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody, 100 ng/mL Interleukin-4 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141CRA Peak\ track wgEncodeReg4Epigenetics_ENCFF379IBF\ type bigBed 5\ visibility squish\ SmallCellCervicalCancerCellLineHCSC1_CNhs11885_ctss_rev Cl:HCSC-1- bigWig small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_reverse 0 1448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20cervical%20cancer%20cell%20line%3aHCSC-1.CNhs11885.10800-110I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10800-110I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HCSC-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellCervicalCancerCellLineHCSC1_CNhs11885_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8\ urlLabel FANTOM5 Details:\ SmallCellCervicalCancerCellLineHCSC1_CNhs11885_tpm_rev Cl:HCSC-1- bigWig small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_reverse 1 1448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20cervical%20cancer%20cell%20line%3aHCSC-1.CNhs11885.10800-110I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small cell cervical cancer cell line:HCSC-1_CNhs11885_10800-110I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10800-110I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HCSC-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellCervicalCancerCellLineHCSC1_CNhs11885_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10800-110I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF087UHU ENCSR017GBO Signal bigWig K562 stably expressing TFDP1 TFDP1 ENCSR017GBO signal 2 1448 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/189ef447-4c2c-4194-b28e-8c2fe4fe150a/ENCFF087UHU.bigWig\ color 254,75,173\ longLabel K562 stably expressing TFDP1 TFDP1 ENCSR017GBO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017GBO Signal\ track wgEncodeReg4TfChip_ENCFF087UHU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF151ZGR ENCSR141CRA Signal bigWig T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody, 100 ng/mL Interleukin-4 H3K4me3 signal 2 1448 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/ca3a30c8-0bdd-4979-a77f-02ef27effec1/ENCFF151ZGR.bigWig\ color 255,0,0\ longLabel T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody, 100 ng/mL Interleukin-4 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141CRA Signal\ track wgEncodeReg4Epigenetics_ENCFF151ZGR\ type bigWig\ visibility full\ HodgkinsLymphomaCellLineHDMar2_CNhs11715_ctss_fwd Cl:HD-Mar2+ bigWig Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_forward 0 1449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10435-106E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HD-Mar2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HodgkinsLymphomaCellLineHDMar2_CNhs11715_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3\ urlLabel FANTOM5 Details:\ HodgkinsLymphomaCellLineHDMar2_CNhs11715_tpm_fwd Cl:HD-Mar2+ bigWig Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_forward 1 1449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10435-106E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HD-Mar2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HodgkinsLymphomaCellLineHDMar2_CNhs11715_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF785JSX ENCSR017QBI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF600 ZNF600 peaks 4 1449 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/bc2fb634-b334-4db0-9b36-14059563d4a2/ENCFF785JSX.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF600 ZNF600 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017QBI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF785JSX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF710LTR ENCSR141DMX Peak bigBed 5 Renal pelvis tissue female embryo 96 days DNase peak 4 1449 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/acd8f3fc-b122-4143-ba73-809e5b6da06d/ENCFF710LTR.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal pelvis tissue female embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141DMX Peak\ track wgEncodeReg4Epigenetics_ENCFF710LTR\ type bigBed 5\ visibility squish\ HodgkinsLymphomaCellLineHDMar2_CNhs11715_ctss_rev Cl:HD-Mar2- bigWig Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse 0 1450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10435-106E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HD-Mar2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HodgkinsLymphomaCellLineHDMar2_CNhs11715_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3\ urlLabel FANTOM5 Details:\ HodgkinsLymphomaCellLineHDMar2_CNhs11715_tpm_rev Cl:HD-Mar2- bigWig Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse 1 1450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hodgkin%27s%20lymphoma%20cell%20line%3aHD-Mar2.CNhs11715.10435-106E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hodgkin's lymphoma cell line:HD-Mar2_CNhs11715_10435-106E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10435-106E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HD-Mar2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HodgkinsLymphomaCellLineHDMar2_CNhs11715_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10435-106E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF335WKU ENCSR017QBI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF600 ZNF600 ENCSR017QBI signal 2 1450 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/addca18e-fd2a-46b1-a514-b8cea3df9262/ENCFF335WKU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF600 ZNF600 ENCSR017QBI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017QBI Signal\ track wgEncodeReg4TfChip_ENCFF335WKU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF951RTD ENCSR141DMX Signal bigWig Renal pelvis tissue female embryo 96 days DNase signal 2 1450 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/5fcdf95b-5bf5-4066-b8ad-611a24f8d12a/ENCFF951RTD.bigWig\ color 6,218,147\ longLabel Renal pelvis tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141DMX Signal\ track wgEncodeReg4Epigenetics_ENCFF951RTD\ type bigWig\ visibility full\ EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_fwd Cl:HEK293/SLAMinfection,24hr+ bigWig embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_forward 0 1451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20infection%2c%2024hr.CNhs11047.10451-106G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10451-106G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMinfection,24hr+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1\ urlLabel FANTOM5 Details:\ 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modified (insertion) using CRISPR targeting H. sapiens ZNF707 ZNF707 peaks 4 1451 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/21/2cdba498-8979-40cd-8a29-512b10e7e035/ENCFF084AUR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707 ZNF707 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017XHZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF084AUR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF313PXW ENCSR141EDV Peak bigBed 5 Middle frontal area 46 tissue male adult 87 years H3K4me3 peak 4 1451 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/4782614c-c166-4bc3-8781-4c1f9f0d014b/ENCFF313PXW.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 87 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141EDV Peak\ track wgEncodeReg4Epigenetics_ENCFF313PXW\ type bigBed 5\ visibility squish\ EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_rev Cl:HEK293/SLAMinfection,24hr- bigWig embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse 0 1452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20infection%2c%2024hr.CNhs11047.10451-106G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10451-106G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMinfection,24hr-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1\ urlLabel FANTOM5 Details:\ EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_tpm_rev Cl:HEK293/SLAMinfection,24hr- bigWig embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse 1 1452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20infection%2c%2024hr.CNhs11047.10451-106G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM infection, 24hr_CNhs11047_10451-106G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10451-106G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEK293/SLAMinfection,24hr-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMInfection24hr_CNhs11047_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10451-106G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF339CER ENCSR017XHZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707 ZNF707 ENCSR017XHZ signal 2 1452 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/21/6aa3a0ab-64c8-4e22-9c7e-67f3fb86f715/ENCFF339CER.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707 ZNF707 ENCSR017XHZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR017XHZ Signal\ track wgEncodeReg4TfChip_ENCFF339CER\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF732JQY ENCSR141EDV Signal bigWig Middle frontal area 46 tissue male adult 87 years H3K4me3 signal 2 1452 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/9cbe756b-9daf-4b93-9603-c6ad113b1fff/ENCFF732JQY.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 87 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141EDV Signal\ track wgEncodeReg4Epigenetics_ENCFF732JQY\ type bigWig\ visibility full\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_fwd Cl:HEK293/SLAMuntreated+ bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward 0 1453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMuntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_fwd Cl:HEK293/SLAMuntreated+ bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward 1 1453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEK293/SLAMuntreated+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF550XRS ENCSR018MQH Peak bigBed 5 MCF-7 ZNF579 peaks 4 1453 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/f25bd6bc-d639-44a3-91ce-ffe533b148fa/ENCFF550XRS.bigBed\ labelFields none\ longLabel MCF-7 ZNF579 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR018MQH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF550XRS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF603HKS ENCSR141IUS Peak bigBed 5 Lung tissue female embryo 76 days DNase peak 4 1453 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/17743180-6df1-4cbc-9df6-729d37dee9fa/ENCFF603HKS.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue female embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141IUS Peak\ track wgEncodeReg4Epigenetics_ENCFF603HKS\ type bigBed 5\ visibility squish\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_rev Cl:HEK293/SLAMuntreated- bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse 0 1454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEK293/SLAMuntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_rev Cl:HEK293/SLAMuntreated- bigWig embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse 1 1454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/embryonic%20kidney%20cell%20line%3a%20HEK293%20SLAM%20untreated.CNhs11046.10450-106F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel embryonic kidney cell line: HEK293/SLAM untreated_CNhs11046_10450-106F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10450-106F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEK293/SLAMuntreated-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EmbryonicKidneyCellLineHEK293SLAMUntreated_CNhs11046_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10450-106F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF550QLC ENCSR018MQH Signal bigWig MCF-7 ZNF579 ENCSR018MQH signal 2 1454 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/41a590e2-cb42-4388-9243-634b60ba880e/ENCFF550QLC.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF579 ENCSR018MQH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR018MQH Signal\ track wgEncodeReg4TfChip_ENCFF550QLC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF445GCD ENCSR141IUS Signal bigWig Lung tissue female embryo 76 days DNase signal 2 1454 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/d4cc5c76-38da-4f62-84eb-735b280ba067/ENCFF445GCD.bigWig\ color 6,218,147\ longLabel Lung tissue female embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141IUS Signal\ track wgEncodeReg4Epigenetics_ENCFF445GCD\ type bigWig\ visibility full\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_fwd Cl:HelaS3Br1+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward 0 1455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_fwd Cl:HelaS3Br1+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward 1 1455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF352SDL ENCSR018MSO Peak bigBed 5 K562 stably expressing ZNF148 ZNF148 peaks 4 1455 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/32267cea-41bc-49a7-8e84-902b81c87e2b/ENCFF352SDL.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF148 ZNF148 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR018MSO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF352SDL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF479YZV ENCSR141MKN Peak bigBed 5 Naive B cell H3K27ac peak 4 1455 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d690badb-3342-4b7b-99d7-cf4907350fce/ENCFF479YZV.bigBed\ color 181,145,0\ longLabel Naive B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141MKN Peak\ track wgEncodeReg4Epigenetics_ENCFF479YZV\ type bigBed 5\ visibility squish\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_rev Cl:HelaS3Br1- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse 0 1456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_rev Cl:HelaS3Br1- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse 1 1456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep1.CNhs12325.10815-111B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep1_CNhs12325_10815-111B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10815-111B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep1_CNhs12325_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10815-111B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF391UJJ ENCSR018MSO Signal bigWig K562 stably expressing ZNF148 ZNF148 ENCSR018MSO signal 2 1456 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/062ee877-501a-483f-8ae3-8e6cc001c33d/ENCFF391UJJ.bigWig\ color 254,75,173\ longLabel K562 stably expressing ZNF148 ZNF148 ENCSR018MSO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR018MSO Signal\ track wgEncodeReg4TfChip_ENCFF391UJJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF202XZK ENCSR141MKN Signal bigWig Naive B cell H3K27ac signal 2 1456 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/336289a5-3113-4b1b-abe5-f0cea1a47d2b/ENCFF202XZK.bigWig\ color 181,145,0\ longLabel Naive B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141MKN Signal\ track wgEncodeReg4Epigenetics_ENCFF202XZK\ type bigWig\ visibility full\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_fwd Cl:HelaS3Br2+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward 0 1457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_fwd Cl:HelaS3Br2+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward 1 1457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF931FHV ENCSR019NPF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP5 SP5 peaks 4 1457 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/537e16c9-bce6-4beb-aa60-8bcc0790ffcf/ENCFF931FHV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP5 SP5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR019NPF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF931FHV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF362YMV ENCSR141NSQ Peak bigBed 5 Muscle of back tissue male embryo 104 days DNase peak 4 1457 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/22bd73a5-fb40-42ee-b89a-fe4d4f59bfd7/ENCFF362YMV.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue male embryo 104 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141NSQ Peak\ track wgEncodeReg4Epigenetics_ENCFF362YMV\ type bigBed 5\ visibility squish\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_rev Cl:HelaS3Br2- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse 0 1458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_rev Cl:HelaS3Br2- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse 1 1458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep2.CNhs12326.10816-111B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2_CNhs12326_10816-111B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10816-111B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep2_CNhs12326_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10816-111B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF096BWB ENCSR019NPF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP5 SP5 ENCSR019NPF signal 2 1458 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/eb290e5e-da44-4384-8782-c64c1e8d468d/ENCFF096BWB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP5 SP5 ENCSR019NPF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR019NPF Signal\ track wgEncodeReg4TfChip_ENCFF096BWB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF537KVD ENCSR141NSQ Signal bigWig Muscle of back tissue male embryo 104 days DNase signal 2 1458 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/5aef2324-0dfc-48cc-ac9c-b84f410b6b60/ENCFF537KVD.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 104 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141NSQ Signal\ track wgEncodeReg4Epigenetics_ENCFF537KVD\ type bigWig\ visibility full\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_fwd Cl:HelaS3Br3+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward 0 1459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_fwd Cl:HelaS3Br3+ bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward 1 1459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF611ZJI ENCSR019WUS Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF10 ZNF10 peaks 4 1459 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/c10ecbbc-83c0-4ca0-b4e7-916572f963e9/ENCFF611ZJI.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF10 ZNF10 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141RSN Peak\ track wgEncodeReg4Epigenetics_ENCFF109TOJ\ type bigBed 5\ visibility squish\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_rev Cl:HelaS3Br3- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse 0 1460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HelaS3Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_rev Cl:HelaS3Br3- bigWig epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse 1 1460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epitheloid%20carcinoma%20cell%20line%3a%20HelaS3%20ENCODE%2c%20biol_rep3.CNhs12327.10817-111B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3_CNhs12327_10817-111B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10817-111B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HelaS3Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpitheloidCarcinomaCellLineHelaS3ENCODEBiolRep3_CNhs12327_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10817-111B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF560GNC ENCSR019WUS Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF10 ZNF10 ENCSR019WUS signal 2 1460 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/14505dc5-dbe1-47a8-bdbd-d65edfd5a70b/ENCFF560GNC.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF10 ZNF10 ENCSR019WUS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR019WUS Signal\ track wgEncodeReg4TfChip_ENCFF560GNC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF034DRR ENCSR141RSN Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase signal 2 1460 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/ae35dd92-a43c-4bc8-8ca2-ccb2a6b158c8/ENCFF034DRR.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141RSN Signal\ track wgEncodeReg4Epigenetics_ENCFF034DRR\ type bigWig\ visibility full\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_fwd Cl:HepG2Br1+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward 0 1461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_fwd Cl:HepG2Br1+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward 1 1461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF491CCY ENCSR020CLV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891 ZNF891 peaks 4 1461 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/a1892ec1-0074-4a7f-b3fb-4c29602d6dcf/ENCFF491CCY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891 ZNF891 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR020CLV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF491CCY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF139PVH ENCSR141VGA Peak bigBed 5 Lung tissue female embryo 85 days DNase peak 4 1461 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/a12c22ac-e9a8-4d16-8e41-e3060ce1e209/ENCFF139PVH.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue female embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141VGA Peak\ track wgEncodeReg4Epigenetics_ENCFF139PVH\ type bigBed 5\ visibility squish\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_rev Cl:HepG2Br1- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse 0 1462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_rev Cl:HepG2Br1- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse 1 1462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep1.CNhs12328.10818-111B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep1_CNhs12328_10818-111B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10818-111B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep1_CNhs12328_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10818-111B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF330XNE ENCSR020CLV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891 ZNF891 ENCSR020CLV signal 2 1462 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/88081a0a-7c00-408c-80a4-c159ae78e4e7/ENCFF330XNE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891 ZNF891 ENCSR020CLV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR020CLV Signal\ track wgEncodeReg4TfChip_ENCFF330XNE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF659ZRM ENCSR141VGA Signal bigWig Lung tissue female embryo 85 days DNase signal 2 1462 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/55385e56-54cf-4afe-abcc-49c44a9fe2be/ENCFF659ZRM.bigWig\ color 6,218,147\ longLabel Lung tissue female embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR141VGA Signal\ track wgEncodeReg4Epigenetics_ENCFF659ZRM\ type bigWig\ visibility full\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_ctss_fwd Cl:HepG2Br2+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_forward 0 1463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep2.CNhs12329.10819-111B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10819-111B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_tpm_fwd Cl:HepG2Br2+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_forward 1 1463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep2.CNhs12329.10819-111B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10819-111B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF221CII ENCSR020UPN Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF184 ZNF184 peaks 4 1463 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/bc482df9-5702-4e9b-a978-e238c52a11a7/ENCFF221CII.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF184 ZNF184 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR020UPN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF221CII\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF256NMP ENCSR142VGG Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak 4 1463 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/eef7d4c1-9ca5-4342-a97a-627b468ee33f/ENCFF256NMP.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR142VGG Peak\ track wgEncodeReg4Epigenetics_ENCFF256NMP\ type bigBed 5\ visibility squish\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_ctss_rev Cl:HepG2Br2- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_reverse 0 1464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep2.CNhs12329.10819-111B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10819-111B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_tpm_rev Cl:HepG2Br2- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_reverse 1 1464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep2.CNhs12329.10819-111B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep2_CNhs12329_10819-111B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10819-111B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep2_CNhs12329_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10819-111B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF394TTI ENCSR020UPN Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF184 ZNF184 ENCSR020UPN signal 2 1464 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/b41c6338-6e55-4044-aad3-c0e1af0ea07f/ENCFF394TTI.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF184 ZNF184 ENCSR020UPN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR020UPN Signal\ track wgEncodeReg4TfChip_ENCFF394TTI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF170RKK ENCSR142VGG Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal 2 1464 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/fc9af184-a9f0-40f8-81e8-89b89811e07e/ENCFF170RKK.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR142VGG Signal\ track wgEncodeReg4Epigenetics_ENCFF170RKK\ type bigWig\ visibility full\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_ctss_fwd Cl:HepG2Br3+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_forward 0 1465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep3.CNhs12330.10820-111C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10820-111C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_tpm_fwd Cl:HepG2Br3+ bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_forward 1 1465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep3.CNhs12330.10820-111C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10820-111C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF294OHB ENCSR021DJC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A BCL11A peaks 4 1465 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/0ffc95ef-d7cc-48e1-9af3-a2747cad520f/ENCFF294OHB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A BCL11A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR021DJC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF294OHB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF309IEH ENCSR143MZL Peak bigBed 5 Brain tissue male embryo 122 days H3K4me3 peak 4 1465 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5cf1a575-0724-4817-a7d2-a8c32d5a1808/ENCFF309IEH.bigBed\ color 255,0,0\ longLabel Brain tissue male embryo 122 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR143MZL Peak\ track wgEncodeReg4Epigenetics_ENCFF309IEH\ type bigBed 5\ visibility squish\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_ctss_rev Cl:HepG2Br3- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_reverse 0 1466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep3.CNhs12330.10820-111C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10820-111C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HepG2Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1\ urlLabel FANTOM5 Details:\ HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_tpm_rev Cl:HepG2Br3- bigWig hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_reverse 1 1466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatocellular%20carcinoma%20cell%20line%3a%20HepG2%20ENCODE%2c%20biol_rep3.CNhs12330.10820-111C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hepatocellular carcinoma cell line: HepG2 ENCODE, biol_rep3_CNhs12330_10820-111C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10820-111C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HepG2Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatocellularCarcinomaCellLineHepG2ENCODEBiolRep3_CNhs12330_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10820-111C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF469GXZ ENCSR021DJC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A BCL11A ENCSR021DJC signal 2 1466 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ba6c0c51-21e4-4d06-829d-95e58da10f37/ENCFF469GXZ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11A BCL11A ENCSR021DJC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR021DJC Signal\ track wgEncodeReg4TfChip_ENCFF469GXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF884KHZ ENCSR143MZL Signal bigWig Brain tissue male embryo 122 days H3K4me3 signal 2 1466 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e0b5a5d8-ccce-4d2d-a0c6-1c3f591b1092/ENCFF884KHZ.bigWig\ color 255,0,0\ longLabel Brain tissue male embryo 122 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR143MZL Signal\ track wgEncodeReg4Epigenetics_ENCFF884KHZ\ type bigWig\ visibility full\ NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_ctss_fwd Cl:HEPM+ bigWig normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_forward 0 1467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20embryonic%20palatal%20mesenchymal%20cell%20line%3aHEPM.CNhs11894.10813-111B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10813-111B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEPM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3\ urlLabel FANTOM5 Details:\ NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_tpm_fwd Cl:HEPM+ bigWig normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_forward 1 1467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20embryonic%20palatal%20mesenchymal%20cell%20line%3aHEPM.CNhs11894.10813-111B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10813-111B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEPM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF505YHP ENCSR022IZK Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF623 ZNF623 peaks 4 1467 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/b83dc7ce-738c-40e2-a879-b63836f9eb1f/ENCFF505YHP.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF623 ZNF623 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR022IZK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF505YHP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF135EUR ENCSR143XNJ Peak bigBed 5 Esophagus squamous epithelium tissue male adult 37 years H3K27ac peak 4 1467 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/4934827b-06c2-416b-b3ac-da6a0f41ce2a/ENCFF135EUR.bigBed\ color 181,145,0\ longLabel Esophagus squamous epithelium tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR143XNJ Peak\ track wgEncodeReg4Epigenetics_ENCFF135EUR\ type bigBed 5\ visibility squish\ NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_ctss_rev Cl:HEPM- bigWig normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_reverse 0 1468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20embryonic%20palatal%20mesenchymal%20cell%20line%3aHEPM.CNhs11894.10813-111B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10813-111B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HEPM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3\ urlLabel FANTOM5 Details:\ NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_tpm_rev Cl:HEPM- bigWig normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_reverse 1 1468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/normal%20embryonic%20palatal%20mesenchymal%20cell%20line%3aHEPM.CNhs11894.10813-111B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel normal embryonic palatal mesenchymal cell line:HEPM_CNhs11894_10813-111B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10813-111B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HEPM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NormalEmbryonicPalatalMesenchymalCellLineHEPM_CNhs11894_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10813-111B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF013ASX ENCSR022IZK Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF623 ZNF623 ENCSR022IZK signal 2 1468 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/2cc5c035-2100-43ae-ab72-4c4da9a41963/ENCFF013ASX.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF623 ZNF623 ENCSR022IZK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR022IZK Signal\ track wgEncodeReg4TfChip_ENCFF013ASX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF037TME ENCSR143XNJ Signal bigWig Esophagus squamous epithelium tissue male adult 37 years H3K27ac signal 2 1468 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/5c031b47-9b16-4890-a7fd-b5f31f8cc9ae/ENCFF037TME.bigWig\ color 181,145,0\ longLabel Esophagus squamous epithelium tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR143XNJ Signal\ track wgEncodeReg4Epigenetics_ENCFF037TME\ type bigWig\ visibility full\ WilmsTumorCellLineHFWT_CNhs11728_ctss_fwd Cl:HFWT+ bigWig Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_forward 0 1469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aHFWT.CNhs11728.10597-108E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10597-108E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HFWT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track WilmsTumorCellLineHFWT_CNhs11728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3\ urlLabel FANTOM5 Details:\ WilmsTumorCellLineHFWT_CNhs11728_tpm_fwd Cl:HFWT+ bigWig Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_forward 1 1469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aHFWT.CNhs11728.10597-108E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10597-108E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HFWT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track WilmsTumorCellLineHFWT_CNhs11728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF107JGJ ENCSR023IPQ Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2 PRRX2 peaks 4 1469 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/055b33ef-7173-4191-bddb-1942905a3da5/ENCFF107JGJ.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2 PRRX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR023IPQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF107JGJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF710QRZ ENCSR144ABJ Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years H3K4me3 peak 4 1469 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/38de648d-a1da-437d-88e0-648c8d87e6ba/ENCFF710QRZ.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR144ABJ Peak\ track wgEncodeReg4Epigenetics_ENCFF710QRZ\ type bigBed 5\ visibility squish\ WilmsTumorCellLineHFWT_CNhs11728_ctss_rev Cl:HFWT- bigWig Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_reverse 0 1470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aHFWT.CNhs11728.10597-108E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10597-108E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HFWT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track WilmsTumorCellLineHFWT_CNhs11728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3\ urlLabel FANTOM5 Details:\ WilmsTumorCellLineHFWT_CNhs11728_tpm_rev Cl:HFWT- bigWig Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_reverse 1 1470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Wilms%27%20tumor%20cell%20line%3aHFWT.CNhs11728.10597-108E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Wilms' tumor cell line:HFWT_CNhs11728_10597-108E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10597-108E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HFWT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track WilmsTumorCellLineHFWT_CNhs11728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10597-108E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF944SPS ENCSR023IPQ Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2 PRRX2 ENCSR023IPQ signal 2 1470 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/1720706b-ce1e-47ba-823d-c30c481e1588/ENCFF944SPS.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2 PRRX2 ENCSR023IPQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR023IPQ Signal\ track wgEncodeReg4TfChip_ENCFF944SPS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF088GSF ENCSR144ABJ Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years H3K4me3 signal 2 1470 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/a4d9acf9-cc41-4932-a500-76b5d70157f5/ENCFF088GSF.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR144ABJ Signal\ track wgEncodeReg4Epigenetics_ENCFF088GSF\ type bigWig\ visibility full\ TridermalTeratomaCellLineHGRT_CNhs11828_ctss_fwd Cl:HGRT+ bigWig tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_forward 0 1471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tridermal%20teratoma%20cell%20line%3aHGRT.CNhs11828.10694-109G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10694-109G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HGRT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TridermalTeratomaCellLineHGRT_CNhs11828_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1\ urlLabel FANTOM5 Details:\ TridermalTeratomaCellLineHGRT_CNhs11828_tpm_fwd Cl:HGRT+ bigWig tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_forward 1 1471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tridermal%20teratoma%20cell%20line%3aHGRT.CNhs11828.10694-109G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10694-109G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HGRT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TridermalTeratomaCellLineHGRT_CNhs11828_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF394HLU ENCSR023KKB Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ESRRG treated with 6 μM all-trans-retinoic acid for 48 hours ESRRG peaks 4 1471 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/94394427-f077-4975-abad-8dd911920acc/ENCFF394HLU.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ESRRG treated with 6 μM all-trans-retinoic acid for 48 hours ESRRG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR023KKB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF394HLU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF929ILE ENCSR144ZXR Peak bigBed 5 HG02759 ATAC peak 4 1471 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/0622ae8c-f2e7-480f-9e0c-75efb56d1b93/ENCFF929ILE.bigBed\ color 2,199,185\ longLabel HG02759 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR144ZXR Peak\ track wgEncodeReg4Epigenetics_ENCFF929ILE\ type bigBed 5\ visibility squish\ TridermalTeratomaCellLineHGRT_CNhs11828_ctss_rev Cl:HGRT- bigWig tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_reverse 0 1472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tridermal%20teratoma%20cell%20line%3aHGRT.CNhs11828.10694-109G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10694-109G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HGRT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TridermalTeratomaCellLineHGRT_CNhs11828_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1\ urlLabel FANTOM5 Details:\ TridermalTeratomaCellLineHGRT_CNhs11828_tpm_rev Cl:HGRT- bigWig tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_reverse 1 1472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tridermal%20teratoma%20cell%20line%3aHGRT.CNhs11828.10694-109G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tridermal teratoma cell line:HGRT_CNhs11828_10694-109G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10694-109G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HGRT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TridermalTeratomaCellLineHGRT_CNhs11828_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10694-109G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF707WZY ENCSR023KKB Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ESRRG treated with 6 μM all-trans-retinoic acid for 48 hours ESRRG ENCSR023KKB signal 2 1472 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/f91489cc-3dd0-4762-abd9-466deb6e9dd2/ENCFF707WZY.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ESRRG treated with 6 μM all-trans-retinoic acid for 48 hours ESRRG ENCSR023KKB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR023KKB Signal\ track wgEncodeReg4TfChip_ENCFF707WZY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF880QAL ENCSR144ZXR Signal bigWig HG02759 ATAC signal 2 1472 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/197f1c53-fbc3-4e2c-a88b-33309cb1f8b5/ENCFF880QAL.bigWig\ color 2,199,185\ longLabel HG02759 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR144ZXR Signal\ track wgEncodeReg4Epigenetics_ENCFF880QAL\ type bigWig\ visibility full\ KeratoacanthomaCellLineHKA1_CNhs11880_ctss_fwd Cl:HKA-1+ bigWig keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_forward 0 1473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/keratoacanthoma%20cell%20line%3aHKA-1.CNhs11880.10791-110H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10791-110H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HKA-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track KeratoacanthomaCellLineHKA1_CNhs11880_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8\ urlLabel FANTOM5 Details:\ KeratoacanthomaCellLineHKA1_CNhs11880_tpm_fwd Cl:HKA-1+ bigWig keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_forward 1 1473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/keratoacanthoma%20cell%20line%3aHKA-1.CNhs11880.10791-110H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10791-110H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HKA-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track KeratoacanthomaCellLineHKA1_CNhs11880_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF216SAZ ENCSR023OOE Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF764 ZNF764 peaks 4 1473 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/7aa0374c-b6c6-452a-983f-509087df33e2/ENCFF216SAZ.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF764 ZNF764 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR023OOE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF216SAZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF193XEM ENCSR146DAL Peak bigBed 5 Mucosa of rectum tissue female adult 61 years H3K4me3 peak 4 1473 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/62756fa4-cbba-4ab3-bb7c-d3d8843b730a/ENCFF193XEM.bigBed\ color 255,0,0\ longLabel Mucosa of rectum tissue female adult 61 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR146DAL Peak\ track wgEncodeReg4Epigenetics_ENCFF193XEM\ type bigBed 5\ visibility squish\ KeratoacanthomaCellLineHKA1_CNhs11880_ctss_rev Cl:HKA-1- bigWig keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_reverse 0 1474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/keratoacanthoma%20cell%20line%3aHKA-1.CNhs11880.10791-110H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10791-110H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HKA-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track KeratoacanthomaCellLineHKA1_CNhs11880_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8\ urlLabel FANTOM5 Details:\ KeratoacanthomaCellLineHKA1_CNhs11880_tpm_rev Cl:HKA-1- bigWig keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_reverse 1 1474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/keratoacanthoma%20cell%20line%3aHKA-1.CNhs11880.10791-110H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel keratoacanthoma cell line:HKA-1_CNhs11880_10791-110H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10791-110H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HKA-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track KeratoacanthomaCellLineHKA1_CNhs11880_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10791-110H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF377ABI ENCSR023OOE Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF764 ZNF764 ENCSR023OOE signal 2 1474 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/19f8ffb6-1c28-40f3-b8e1-e97e3f9c03f8/ENCFF377ABI.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF764 ZNF764 ENCSR023OOE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR023OOE Signal\ track wgEncodeReg4TfChip_ENCFF377ABI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF370MEL ENCSR146DAL Signal bigWig Mucosa of rectum tissue female adult 61 years H3K4me3 signal 2 1474 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/973581f3-2476-4577-9c4c-5927112d9cea/ENCFF370MEL.bigWig\ color 255,0,0\ longLabel Mucosa of rectum tissue female adult 61 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR146DAL Signal\ track wgEncodeReg4Epigenetics_ENCFF370MEL\ type bigWig\ visibility full\ MeningiomaCellLineHKBMM_CNhs11945_ctss_fwd Cl:HKBMM+ bigWig meningioma cell line:HKBMM_CNhs11945_10691-109F7_forward 0 1475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/meningioma%20cell%20line%3aHKBMM.CNhs11945.10691-109F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel meningioma cell line:HKBMM_CNhs11945_10691-109F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10691-109F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HKBMM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MeningiomaCellLineHKBMM_CNhs11945_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7\ urlLabel FANTOM5 Details:\ MeningiomaCellLineHKBMM_CNhs11945_tpm_fwd Cl:HKBMM+ bigWig meningioma cell line:HKBMM_CNhs11945_10691-109F7_forward 1 1475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/meningioma%20cell%20line%3aHKBMM.CNhs11945.10691-109F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel meningioma cell line:HKBMM_CNhs11945_10691-109F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10691-109F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HKBMM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MeningiomaCellLineHKBMM_CNhs11945_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF895KGN ENCSR024CNP Peak bigBed 5 K562 EGR1 peaks 4 1475 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/e7359b3c-5374-47ed-91fb-3fbd32a4d8ee/ENCFF895KGN.bigBed\ labelFields none\ longLabel K562 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR024CNP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF895KGN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF508TDL ENCSR146DPQ Peak bigBed 5 WTC11 H3K27ac peak 4 1475 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/688b0ea3-8218-4c4f-8c7a-86296de905c3/ENCFF508TDL.bigBed\ color 181,145,0\ longLabel WTC11 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR146DPQ Peak\ track wgEncodeReg4Epigenetics_ENCFF508TDL\ type bigBed 5\ visibility squish\ MeningiomaCellLineHKBMM_CNhs11945_ctss_rev Cl:HKBMM- bigWig meningioma cell line:HKBMM_CNhs11945_10691-109F7_reverse 0 1476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/meningioma%20cell%20line%3aHKBMM.CNhs11945.10691-109F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel meningioma cell line:HKBMM_CNhs11945_10691-109F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10691-109F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HKBMM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MeningiomaCellLineHKBMM_CNhs11945_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7\ urlLabel FANTOM5 Details:\ MeningiomaCellLineHKBMM_CNhs11945_tpm_rev Cl:HKBMM- bigWig meningioma cell line:HKBMM_CNhs11945_10691-109F7_reverse 1 1476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/meningioma%20cell%20line%3aHKBMM.CNhs11945.10691-109F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel meningioma cell line:HKBMM_CNhs11945_10691-109F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10691-109F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HKBMM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MeningiomaCellLineHKBMM_CNhs11945_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10691-109F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF713GIR ENCSR024LKA Peak bigBed 5 K562 HDAC3 peaks 4 1476 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/4b4b7e12-4478-46a9-87ad-6f594394be6c/ENCFF713GIR.bigBed\ labelFields none\ longLabel K562 HDAC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR024LKA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF713GIR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF306ZMK ENCSR146DPQ Signal bigWig WTC11 H3K27ac signal 2 1476 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/6bd3563c-7b5b-4aee-8be3-c2ed69672d09/ENCFF306ZMK.bigWig\ color 181,145,0\ longLabel WTC11 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR146DPQ Signal\ track wgEncodeReg4Epigenetics_ENCFF306ZMK\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_ctss_fwd Cl:HL60+ bigWig acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_forward 0 1477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M3%29%20cell%20line%3aHL60.CNhs13055.10829-111D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10829-111D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HL60+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_tpm_fwd Cl:HL60+ bigWig acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_forward 1 1477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M3%29%20cell%20line%3aHL60.CNhs13055.10829-111D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10829-111D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HL60+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF975DCO ENCSR024LKA Signal bigWig K562 HDAC3 ENCSR024LKA signal 2 1477 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/972a36ff-b52b-4ab8-a3ea-619cbe8814f9/ENCFF975DCO.bigWig\ color 254,75,173\ longLabel K562 HDAC3 ENCSR024LKA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR024LKA Signal\ track wgEncodeReg4TfChip_ENCFF975DCO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF760SNA ENCSR146KFX Peak bigBed 5 Astrocyte DNase peak 4 1477 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/31b84116-4fdb-4ba7-8291-474c10644f52/ENCFF760SNA.bigBed\ color 6,218,147\ labelFields none\ longLabel Astrocyte DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR146KFX Peak\ track wgEncodeReg4Epigenetics_ENCFF760SNA\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_ctss_rev Cl:HL60- bigWig acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_reverse 0 1478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M3%29%20cell%20line%3aHL60.CNhs13055.10829-111D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10829-111D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HL60-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_tpm_rev Cl:HL60- bigWig acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_reverse 1 1478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M3%29%20cell%20line%3aHL60.CNhs13055.10829-111D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M3) cell line:HL60_CNhs13055_10829-111D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10829-111D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HL60-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM3CellLineHL60_CNhs13055_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10829-111D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF817YVE ENCSR025EXJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF5 IRF5 peaks 4 1478 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/b16f3505-e913-4b1d-b021-7e81a240f6e9/ENCFF817YVE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF5 IRF5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR025EXJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF817YVE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF926MIK ENCSR146KFX Signal bigWig Astrocyte DNase signal 2 1478 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/156deae0-d950-433f-b0ff-494b26d847b3/ENCFF926MIK.bigWig\ color 6,218,147\ longLabel Astrocyte DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR146KFX Signal\ track wgEncodeReg4Epigenetics_ENCFF926MIK\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_ctss_fwd Cl:HNT-34+ bigWig acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_forward 0 1479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aHNT-34.CNhs13504.10831-111D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10831-111D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HNT-34+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_tpm_fwd Cl:HNT-34+ bigWig acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_forward 1 1479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aHNT-34.CNhs13504.10831-111D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10831-111D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HNT-34+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF739CET ENCSR025EXJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF5 IRF5 ENCSR025EXJ signal 2 1479 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/0488f61e-fb46-430e-85a0-69775b57357d/ENCFF739CET.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF5 IRF5 ENCSR025EXJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR025EXJ Signal\ track wgEncodeReg4TfChip_ENCFF739CET\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF833FRQ ENCSR147QLU Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase peak 4 1479 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/3389b1b4-edf5-42d1-b71e-751289a4fc3e/ENCFF833FRQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR147QLU Peak\ track wgEncodeReg4Epigenetics_ENCFF833FRQ\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_ctss_rev Cl:HNT-34- bigWig acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_reverse 0 1480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aHNT-34.CNhs13504.10831-111D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10831-111D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HNT-34-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_tpm_rev Cl:HNT-34- bigWig acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_reverse 1 1480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M4%29%20cell%20line%3aHNT-34.CNhs13504.10831-111D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M4) cell line:HNT-34_CNhs13504_10831-111D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10831-111D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HNT-34-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM4CellLineHNT34_CNhs13504_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10831-111D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF832BBO ENCSR025ZZA Peak bigBed 5 Suprapubic skin tissue female adult (51 years) POLR2A peaks 4 1480 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/60aa0cd0-ad0b-4eeb-8816-33c5b296ec2d/ENCFF832BBO.bigBed\ labelFields none\ longLabel Suprapubic skin tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR025ZZA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF832BBO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF745JTE ENCSR147QLU Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase signal 2 1480 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c6b3385a-008f-4bdd-a29e-04bbded48fbc/ENCFF745JTE.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR147QLU Signal\ track wgEncodeReg4Epigenetics_ENCFF745JTE\ type bigWig\ visibility full\ OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_ctss_fwd Cl:HO-1-u-1+ bigWig oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_forward 0 1481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHO-1-u-1.CNhs11287.10550-107I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10550-107I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HO-1-u-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_tpm_fwd Cl:HO-1-u-1+ bigWig oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_forward 1 1481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHO-1-u-1.CNhs11287.10550-107I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10550-107I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HO-1-u-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF186NVY ENCSR025ZZA Signal bigWig Suprapubic skin tissue female adult (51 years) POLR2A ENCSR025ZZA signal 2 1481 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/5f47d7e7-7782-4556-87c1-e94e56589277/ENCFF186NVY.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (51 years) POLR2A ENCSR025ZZA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR025ZZA Signal\ track wgEncodeReg4TfChip_ENCFF186NVY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF166UUO ENCSR147VUC Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 1481 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/041e7039-0e86-4a47-9b2b-a7823946429e/ENCFF166UUO.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR147VUC Peak\ track wgEncodeReg4Epigenetics_ENCFF166UUO\ type bigBed 5\ visibility squish\ OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_ctss_rev Cl:HO-1-u-1- bigWig oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_reverse 0 1482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHO-1-u-1.CNhs11287.10550-107I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10550-107I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HO-1-u-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_tpm_rev Cl:HO-1-u-1- bigWig oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_reverse 1 1482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHO-1-u-1.CNhs11287.10550-107I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:HO-1-u-1_CNhs11287_10550-107I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10550-107I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HO-1-u-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineHO1u1_CNhs11287_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10550-107I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF674RQO ENCSR026GSW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1 EGR1 peaks 4 1482 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/21/35535bdc-ef3c-4ef7-b891-5474b63006f0/ENCFF674RQO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR026GSW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF674RQO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF867WWB ENCSR147VUC Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 1482 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/a528379a-628d-49d5-8e35-4b58287c0667/ENCFF867WWB.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR147VUC Signal\ track wgEncodeReg4Epigenetics_ENCFF867WWB\ type bigWig\ visibility full\ GlassyCellCarcinomaCellLineHOKUG_CNhs11824_ctss_fwd Cl:HOKUG+ bigWig glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_forward 0 1483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glassy%20cell%20carcinoma%20cell%20line%3aHOKUG.CNhs11824.10688-109F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10688-109F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HOKUG+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlassyCellCarcinomaCellLineHOKUG_CNhs11824_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4\ urlLabel FANTOM5 Details:\ GlassyCellCarcinomaCellLineHOKUG_CNhs11824_tpm_fwd Cl:HOKUG+ bigWig glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_forward 1 1483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glassy%20cell%20carcinoma%20cell%20line%3aHOKUG.CNhs11824.10688-109F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10688-109F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HOKUG+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlassyCellCarcinomaCellLineHOKUG_CNhs11824_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF493YKE ENCSR026GSW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1 EGR1 ENCSR026GSW signal 2 1483 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/21/ccb3e754-6fcd-40c1-8765-9bca4223ed0c/ENCFF493YKE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1 EGR1 ENCSR026GSW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR026GSW Signal\ track wgEncodeReg4TfChip_ENCFF493YKE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF744XRM ENCSR148MFM Peak bigBed 5 Spinal cord tissue male embryo 105 days DNase peak 4 1483 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c513eda2-088b-46e0-be9a-60b87dbb9d33/ENCFF744XRM.bigBed\ color 6,218,147\ labelFields none\ longLabel Spinal cord tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR148MFM Peak\ track wgEncodeReg4Epigenetics_ENCFF744XRM\ type bigBed 5\ visibility squish\ GlassyCellCarcinomaCellLineHOKUG_CNhs11824_ctss_rev Cl:HOKUG- bigWig glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_reverse 0 1484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glassy%20cell%20carcinoma%20cell%20line%3aHOKUG.CNhs11824.10688-109F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10688-109F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HOKUG-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlassyCellCarcinomaCellLineHOKUG_CNhs11824_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4\ urlLabel FANTOM5 Details:\ GlassyCellCarcinomaCellLineHOKUG_CNhs11824_tpm_rev Cl:HOKUG- bigWig glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_reverse 1 1484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glassy%20cell%20carcinoma%20cell%20line%3aHOKUG.CNhs11824.10688-109F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel glassy cell carcinoma cell line:HOKUG_CNhs11824_10688-109F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10688-109F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HOKUG-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlassyCellCarcinomaCellLineHOKUG_CNhs11824_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10688-109F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF731UTU ENCSR026KKZ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17 ZBTB17 peaks 4 1484 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/7cc4ecfa-990c-40da-b22d-2bb0bba43abc/ENCFF731UTU.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17 ZBTB17 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR026KKZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF731UTU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF518HMA ENCSR148MFM Signal bigWig Spinal cord tissue male embryo 105 days DNase signal 2 1484 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/2286fc25-9cc1-4c9f-a1d7-645fb546d9f3/ENCFF518HMA.bigWig\ color 6,218,147\ longLabel Spinal cord tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR148MFM Signal\ track wgEncodeReg4Epigenetics_ENCFF518HMA\ type bigWig\ visibility full\ AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_ctss_fwd Cl:HPB-ALL+ bigWig acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_forward 0 1485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28T-ALL%29%20cell%20line%3aHPB-ALL.CNhs10746.10429-106D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10429-106D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HPB-ALL+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_tpm_fwd Cl:HPB-ALL+ bigWig acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_forward 1 1485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28T-ALL%29%20cell%20line%3aHPB-ALL.CNhs10746.10429-106D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10429-106D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HPB-ALL+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF334KTM ENCSR026KKZ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17 ZBTB17 ENCSR026KKZ signal 2 1485 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/a45318f5-a308-4b7a-95d2-983d660a620b/ENCFF334KTM.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17 ZBTB17 ENCSR026KKZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR026KKZ Signal\ track wgEncodeReg4TfChip_ENCFF334KTM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF618JIP ENCSR148VUP Peak bigBed 5 Hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days DNase peak 4 1485 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/3a557492-30bd-4516-a737-f2c71e4b1bc1/ENCFF618JIP.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR148VUP Peak\ track wgEncodeReg4Epigenetics_ENCFF618JIP\ type bigBed 5\ visibility squish\ AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_ctss_rev Cl:HPB-ALL- bigWig acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_reverse 0 1486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28T-ALL%29%20cell%20line%3aHPB-ALL.CNhs10746.10429-106D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10429-106D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HPB-ALL-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_tpm_rev Cl:HPB-ALL- bigWig acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_reverse 1 1486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28T-ALL%29%20cell%20line%3aHPB-ALL.CNhs10746.10429-106D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (T-ALL) cell line:HPB-ALL_CNhs10746_10429-106D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10429-106D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HPB-ALL-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaTALLCellLineHPBALL_CNhs10746_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10429-106D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF972ENM ENCSR026RAK Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 peaks 4 1486 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/997adbb1-7a83-40ed-a5e0-2c42c55a0adc/ENCFF972ENM.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR026RAK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF972ENM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644AXQ ENCSR148VUP Signal bigWig Hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days DNase signal 2 1486 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/bc28d228-8c14-4aeb-9de2-bc141382ada2/ENCFF644AXQ.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 4 days, kit ligand for 4 days, hydrocortisone succinate for 4 days, erythropoietin for 4 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR148VUP Signal\ track wgEncodeReg4Epigenetics_ENCFF644AXQ\ type bigWig\ visibility full\ EpithelioidSarcomaCellLineHSES1_CNhs11247_ctss_fwd Cl:HS-ES-1+ bigWig epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_forward 0 1487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-1.CNhs11247.10443-106F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10443-106F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-ES-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpithelioidSarcomaCellLineHSES1_CNhs11247_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2\ urlLabel FANTOM5 Details:\ EpithelioidSarcomaCellLineHSES1_CNhs11247_tpm_fwd Cl:HS-ES-1+ bigWig epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_forward 1 1487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-1.CNhs11247.10443-106F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10443-106F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-ES-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpithelioidSarcomaCellLineHSES1_CNhs11247_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF874TGD ENCSR026RAK Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 ENCSR026RAK signal 2 1487 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/979c6ebd-3145-4adf-aaa8-9d756534c3a8/ENCFF874TGD.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 ENCSR026RAK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR026RAK Signal\ track wgEncodeReg4TfChip_ENCFF874TGD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF790QOG ENCSR149XIH Peak bigBed 5 Duodenal mucosa tissue male adult 76 years H3K4me3 peak 4 1487 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c84defcd-662d-453e-a226-2927f0ca2f8a/ENCFF790QOG.bigBed\ color 255,0,0\ longLabel Duodenal mucosa tissue male adult 76 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR149XIH Peak\ track wgEncodeReg4Epigenetics_ENCFF790QOG\ type bigBed 5\ visibility squish\ EpithelioidSarcomaCellLineHSES1_CNhs11247_ctss_rev Cl:HS-ES-1- bigWig epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_reverse 0 1488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-1.CNhs11247.10443-106F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10443-106F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-ES-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpithelioidSarcomaCellLineHSES1_CNhs11247_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2\ urlLabel FANTOM5 Details:\ EpithelioidSarcomaCellLineHSES1_CNhs11247_tpm_rev Cl:HS-ES-1- bigWig epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_reverse 1 1488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-1.CNhs11247.10443-106F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epithelioid sarcoma cell line:HS-ES-1_CNhs11247_10443-106F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10443-106F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-ES-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpithelioidSarcomaCellLineHSES1_CNhs11247_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10443-106F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF277NLT ENCSR027FSZ Peak bigBed 5 Upper lobe of left lung tissue male adult (37 years) CTCF peaks 4 1488 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/be6221d0-1ee2-4f43-9dd4-e390e5e34e2d/ENCFF277NLT.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR027FSZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF277NLT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF425FMW ENCSR149XIH Signal bigWig Duodenal mucosa tissue male adult 76 years H3K4me3 signal 2 1488 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/795c4822-8fa3-44a7-87d6-4ff19ddeeb05/ENCFF425FMW.bigWig\ color 255,0,0\ longLabel Duodenal mucosa tissue male adult 76 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR149XIH Signal\ track wgEncodeReg4Epigenetics_ENCFF425FMW\ type bigWig\ visibility full\ EpithelioidSarcomaCellLineHSES2R_CNhs14239_ctss_fwd Cl:HS-ES-2R+ bigWig epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_forward 0 1489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-2R.CNhs14239.10495-107B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10495-107B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-ES-2R+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpithelioidSarcomaCellLineHSES2R_CNhs14239_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9\ urlLabel FANTOM5 Details:\ EpithelioidSarcomaCellLineHSES2R_CNhs14239_tpm_fwd Cl:HS-ES-2R+ bigWig epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_forward 1 1489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-2R.CNhs14239.10495-107B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10495-107B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-ES-2R+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EpithelioidSarcomaCellLineHSES2R_CNhs14239_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF862ZOO ENCSR027FSZ Signal bigWig Upper lobe of left lung tissue male adult (37 years) CTCF ENCSR027FSZ signal 2 1489 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/a58c5e26-9d7e-492e-b7e4-8bf36f13177b/ENCFF862ZOO.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (37 years) CTCF ENCSR027FSZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR027FSZ Signal\ track wgEncodeReg4TfChip_ENCFF862ZOO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF150FJC ENCSR149XIL Peak bigBed 5 HepG2 DNase peak 4 1489 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/15e17d5e-736e-4553-b65f-bb675b7c2c64/ENCFF150FJC.bigBed\ color 6,218,147\ labelFields none\ longLabel HepG2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR149XIL Peak\ track wgEncodeReg4Epigenetics_ENCFF150FJC\ type bigBed 5\ visibility squish\ EpithelioidSarcomaCellLineHSES2R_CNhs14239_ctss_rev Cl:HS-ES-2R- bigWig epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_reverse 0 1490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-2R.CNhs14239.10495-107B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10495-107B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-ES-2R-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpithelioidSarcomaCellLineHSES2R_CNhs14239_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9\ urlLabel FANTOM5 Details:\ EpithelioidSarcomaCellLineHSES2R_CNhs14239_tpm_rev Cl:HS-ES-2R- bigWig epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_reverse 1 1490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epithelioid%20sarcoma%20cell%20line%3aHS-ES-2R.CNhs14239.10495-107B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epithelioid sarcoma cell line:HS-ES-2R_CNhs14239_10495-107B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10495-107B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-ES-2R-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EpithelioidSarcomaCellLineHSES2R_CNhs14239_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10495-107B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF086AXQ ENCSR027HML Peak bigBed 5 OCI-LY7 CTCF peaks 4 1490 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5fc1f002-fbeb-4724-a475-beb93b32cf7e/ENCFF086AXQ.bigBed\ labelFields none\ longLabel OCI-LY7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR027HML Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF086AXQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF546MZK ENCSR149XIL Signal bigWig HepG2 DNase signal 2 1490 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/93fa54ce-2b55-43ff-bc8e-0e4a6b5186ee/ENCFF546MZK.bigWig\ color 6,218,147\ longLabel HepG2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR149XIL Signal\ track wgEncodeReg4Epigenetics_ENCFF546MZK\ type bigWig\ visibility full\ OsteosarcomaCellLineHSOs1_CNhs11290_ctss_fwd Cl:HS-Os-1+ bigWig osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_forward 0 1491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3aHS-Os-1.CNhs11290.10558-107I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10558-107I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-Os-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteosarcomaCellLineHSOs1_CNhs11290_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLineHSOs1_CNhs11290_tpm_fwd Cl:HS-Os-1+ bigWig osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_forward 1 1491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3aHS-Os-1.CNhs11290.10558-107I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10558-107I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-Os-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteosarcomaCellLineHSOs1_CNhs11290_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF975BGM ENCSR027HML Signal bigWig OCI-LY7 CTCF ENCSR027HML signal 2 1491 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e0602241-33fa-450a-bffa-4546baedb4ae/ENCFF975BGM.bigWig\ color 254,75,173\ longLabel OCI-LY7 CTCF ENCSR027HML signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR027HML Signal\ track wgEncodeReg4TfChip_ENCFF975BGM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF602BBS ENCSR150QXE Peak bigBed 5 Heart left ventricle tissue male adult 34 years H3K27ac peak 4 1491 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/7922afab-8094-4904-80cd-070d5db9f724/ENCFF602BBS.bigBed\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR150QXE Peak\ track wgEncodeReg4Epigenetics_ENCFF602BBS\ type bigBed 5\ visibility squish\ OsteosarcomaCellLineHSOs1_CNhs11290_ctss_rev Cl:HS-Os-1- bigWig osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_reverse 0 1492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3aHS-Os-1.CNhs11290.10558-107I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10558-107I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-Os-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteosarcomaCellLineHSOs1_CNhs11290_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9\ urlLabel FANTOM5 Details:\ OsteosarcomaCellLineHSOs1_CNhs11290_tpm_rev Cl:HS-Os-1- bigWig osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_reverse 1 1492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteosarcoma%20cell%20line%3aHS-Os-1.CNhs11290.10558-107I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel osteosarcoma cell line:HS-Os-1_CNhs11290_10558-107I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10558-107I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-Os-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteosarcomaCellLineHSOs1_CNhs11290_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10558-107I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF652WZM ENCSR027UFT Peak bigBed 5 C4-2B ZFX peaks 4 1492 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/914e5ba3-530c-4a3e-b89b-1aea9317bffe/ENCFF652WZM.bigBed\ labelFields none\ longLabel C4-2B ZFX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR027UFT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF652WZM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF430ZYJ ENCSR150QXE Signal bigWig Heart left ventricle tissue male adult 34 years H3K27ac signal 2 1492 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/24094c43-2244-4acd-9f28-80022df69392/ENCFF430ZYJ.bigWig\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR150QXE Signal\ track wgEncodeReg4Epigenetics_ENCFF430ZYJ\ type bigWig\ visibility full\ SchwannomaCellLineHSPSSTechRep2_CNhs11245_ctss_fwd Cl:HS-PSSTr2+ bigWig schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_forward 0 1493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/schwannoma%20cell%20line%3aHS-PSS%2c%20tech_rep2.CNhs11245.10442-106F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10442-106F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-PSSTr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SchwannomaCellLineHSPSSTechRep2_CNhs11245_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1\ urlLabel FANTOM5 Details:\ SchwannomaCellLineHSPSSTechRep2_CNhs11245_tpm_fwd Cl:HS-PSSTr2+ bigWig schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_forward 1 1493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/schwannoma%20cell%20line%3aHS-PSS%2c%20tech_rep2.CNhs11245.10442-106F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10442-106F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-PSSTr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SchwannomaCellLineHSPSSTechRep2_CNhs11245_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF264NUJ ENCSR027UFT Signal bigWig C4-2B ZFX ENCSR027UFT signal 2 1493 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/848fdd25-29b4-41f3-bc51-45b0283e38a2/ENCFF264NUJ.bigWig\ color 140,140,140\ longLabel C4-2B ZFX ENCSR027UFT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR027UFT Signal\ track wgEncodeReg4TfChip_ENCFF264NUJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF908MZD ENCSR152AVY Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour DNase peak 4 1493 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/1fa37edf-958a-4dfd-b7ce-29d41c4d42f1/ENCFF908MZD.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152AVY Peak\ track wgEncodeReg4Epigenetics_ENCFF908MZD\ type bigBed 5\ visibility squish\ SchwannomaCellLineHSPSSTechRep2_CNhs11245_ctss_rev Cl:HS-PSSTr2- bigWig schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_reverse 0 1494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/schwannoma%20cell%20line%3aHS-PSS%2c%20tech_rep2.CNhs11245.10442-106F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10442-106F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-PSSTr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SchwannomaCellLineHSPSSTechRep2_CNhs11245_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1\ urlLabel FANTOM5 Details:\ SchwannomaCellLineHSPSSTechRep2_CNhs11245_tpm_rev Cl:HS-PSSTr2- bigWig schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_reverse 1 1494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/schwannoma%20cell%20line%3aHS-PSS%2c%20tech_rep2.CNhs11245.10442-106F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel schwannoma cell line:HS-PSS, tech_rep2_CNhs11245_10442-106F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10442-106F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-PSSTr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SchwannomaCellLineHSPSSTechRep2_CNhs11245_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10442-106F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF118PNN ENCSR028EGI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF26 ZNF26 peaks 4 1494 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/e1d8a5a7-13da-4d7e-9a66-c54e41eaa55e/ENCFF118PNN.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF26 ZNF26 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR028EGI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF118PNN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF203AEJ ENCSR152AVY Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour DNase signal 2 1494 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/5e2c0bcc-ab90-42ae-be81-991f670ebba2/ENCFF203AEJ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152AVY Signal\ track wgEncodeReg4Epigenetics_ENCFF203AEJ\ type bigWig\ visibility full\ SynovialSarcomaCellLineHSSYII_CNhs11244_ctss_fwd Cl:HS-SY-II+ bigWig synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_forward 0 1495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/synovial%20sarcoma%20cell%20line%3aHS-SY-II.CNhs11244.10441-106E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10441-106E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-SY-II+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SynovialSarcomaCellLineHSSYII_CNhs11244_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9\ urlLabel FANTOM5 Details:\ SynovialSarcomaCellLineHSSYII_CNhs11244_tpm_fwd Cl:HS-SY-II+ bigWig synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_forward 1 1495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/synovial%20sarcoma%20cell%20line%3aHS-SY-II.CNhs11244.10441-106E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10441-106E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-SY-II+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SynovialSarcomaCellLineHSSYII_CNhs11244_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF032CLW ENCSR028EGI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF26 ZNF26 ENCSR028EGI signal 2 1495 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f2d79938-488c-40ed-851a-2a9c785490d2/ENCFF032CLW.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF26 ZNF26 ENCSR028EGI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR028EGI Signal\ track wgEncodeReg4TfChip_ENCFF032CLW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF858QQT ENCSR152FWD Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-15 for 4 hours DNase peak 4 1495 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/1a425cb1-0378-44c9-925b-d9f21f3a2e9c/ENCFF858QQT.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-15 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152FWD Peak\ track wgEncodeReg4Epigenetics_ENCFF858QQT\ type bigBed 5\ visibility squish\ SynovialSarcomaCellLineHSSYII_CNhs11244_ctss_rev Cl:HS-SY-II- bigWig synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse 0 1496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/synovial%20sarcoma%20cell%20line%3aHS-SY-II.CNhs11244.10441-106E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10441-106E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HS-SY-II-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SynovialSarcomaCellLineHSSYII_CNhs11244_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9\ urlLabel FANTOM5 Details:\ SynovialSarcomaCellLineHSSYII_CNhs11244_tpm_rev Cl:HS-SY-II- bigWig synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse 1 1496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/synovial%20sarcoma%20cell%20line%3aHS-SY-II.CNhs11244.10441-106E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel synovial sarcoma cell line:HS-SY-II_CNhs11244_10441-106E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10441-106E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HS-SY-II-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SynovialSarcomaCellLineHSSYII_CNhs11244_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10441-106E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF604FPV ENCSR028UIU Peak bigBed 5 K562 ATF3 peaks 4 1496 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/a63f51f0-f6f8-4f74-977f-59a19d6eeb55/ENCFF604FPV.bigBed\ labelFields none\ longLabel K562 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR028UIU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF604FPV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF369FTG ENCSR152FWD Signal bigWig CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-15 for 4 hours DNase signal 2 1496 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/45788af9-087a-4cd2-baaf-ff272b34cba2/ENCFF369FTG.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-15 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152FWD Signal\ track wgEncodeReg4Epigenetics_ENCFF369FTG\ type bigWig\ visibility full\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_fwd Cl:Hs132_T+ bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward 0 1497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs132_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_fwd Cl:Hs132_T+ bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward 1 1497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs132_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF042VZA ENCSR028UIU Signal bigWig K562 ATF3 ENCSR028UIU signal 2 1497 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/705fa12f-1018-41d4-b57b-7b6b25e60037/ENCFF042VZA.bigWig\ color 254,75,173\ longLabel K562 ATF3 ENCSR028UIU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR028UIU Signal\ track wgEncodeReg4TfChip_ENCFF042VZA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF327TYG ENCSR152MAZ Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K27ac peak 4 1497 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/67c67004-8cd1-4d30-b377-a394820170d2/ENCFF327TYG.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152MAZ Peak\ track wgEncodeReg4Epigenetics_ENCFF327TYG\ type bigBed 5\ visibility squish\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_rev Cl:Hs132_T- bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse 0 1498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs132_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_rev Cl:Hs132_T- bigWig spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse 1 1498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spindle%20cell%20sarcoma%20cell%20line%3aHs%20132%2eT.CNhs11857.10737-110B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spindle cell sarcoma cell line:Hs 132_T_CNhs11857_10737-110B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10737-110B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs132_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SpindleCellSarcomaCellLineHs132_T_CNhs11857_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10737-110B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF878IYR ENCSR028YEV Peak bigBed 5 Spleen tissue male adult (54 years) CTCF peaks 4 1498 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/88975eb1-3cd3-49c2-a706-33f1095ea717/ENCFF878IYR.bigBed\ labelFields none\ longLabel Spleen tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR028YEV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF878IYR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF685BLE ENCSR152MAZ Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K27ac signal 2 1498 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/efc5c804-2d38-454a-a63a-10f2e023b8b8/ENCFF685BLE.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152MAZ Signal\ track wgEncodeReg4Epigenetics_ENCFF685BLE\ type bigWig\ visibility full\ NeurofibromaCellLineHs53_T_CNhs11854_ctss_fwd Cl:Hs53_T+ bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward 0 1499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs53_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeurofibromaCellLineHs53_T_CNhs11854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ NeurofibromaCellLineHs53_T_CNhs11854_tpm_fwd Cl:Hs53_T+ bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward 1 1499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs53_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeurofibromaCellLineHs53_T_CNhs11854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF295PXU ENCSR028YEV Signal bigWig Spleen tissue male adult (54 years) CTCF ENCSR028YEV signal 2 1499 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/e877c576-87d7-42a5-a35a-ac2485b4acdb/ENCFF295PXU.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (54 years) CTCF ENCSR028YEV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR028YEV Signal\ track wgEncodeReg4TfChip_ENCFF295PXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF113RLQ ENCSR152PSA Peak bigBed 5 Body of pancreas tissue male adult 37 years ATAC peak 4 1499 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/6650b0b7-3dc6-4ff9-8b84-6769e08caae0/ENCFF113RLQ.bigBed\ color 2,199,185\ longLabel Body of pancreas tissue male adult 37 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152PSA Peak\ track wgEncodeReg4Epigenetics_ENCFF113RLQ\ type bigBed 5\ visibility squish\ NeurofibromaCellLineHs53_T_CNhs11854_ctss_rev Cl:Hs53_T- bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse 0 1500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs53_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeurofibromaCellLineHs53_T_CNhs11854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ NeurofibromaCellLineHs53_T_CNhs11854_tpm_rev Cl:Hs53_T- bigWig neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse 1 1500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neurofibroma%20cell%20line%3aHs%2053%2eT.CNhs11854.10729-110A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neurofibroma cell line:Hs 53_T_CNhs11854_10729-110A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10729-110A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs53_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeurofibromaCellLineHs53_T_CNhs11854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10729-110A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF429EPY ENCSR029ARE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF773 ZNF773 peaks 4 1500 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/2c231e47-ae3d-4080-a0a3-fdff6d0542ec/ENCFF429EPY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF773 ZNF773 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR029ARE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF429EPY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF482HSM ENCSR152PSA Signal bigWig Body of pancreas tissue male adult 37 years ATAC signal 2 1500 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/80c63e74-edcb-47d9-b235-1b77f32d5038/ENCFF482HSM.bigWig\ color 2,199,185\ longLabel Body of pancreas tissue male adult 37 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR152PSA Signal\ track wgEncodeReg4Epigenetics_ENCFF482HSM\ type bigWig\ visibility full\ OsteoclastomaCellLineHs706_T_CNhs11835_ctss_fwd Cl:Hs706_T+ bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward 0 1501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs706_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteoclastomaCellLineHs706_T_CNhs11835_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ OsteoclastomaCellLineHs706_T_CNhs11835_tpm_fwd Cl:Hs706_T+ bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward 1 1501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs706_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OsteoclastomaCellLineHs706_T_CNhs11835_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF635RSI ENCSR029ARE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF773 ZNF773 ENCSR029ARE signal 2 1501 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/63adcb5e-c811-4bf5-bc75-db0fa0f143b7/ENCFF635RSI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF773 ZNF773 ENCSR029ARE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR029ARE Signal\ track wgEncodeReg4TfChip_ENCFF635RSI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF385EPA ENCSR153IUB Peak bigBed 5 Mucosa of urinary bladder tissue male adult 26 years ATAC peak 4 1501 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/81f82062-c211-401b-b92a-5f616e245ec4/ENCFF385EPA.bigBed\ color 2,199,185\ longLabel Mucosa of urinary bladder tissue male adult 26 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153IUB Peak\ track wgEncodeReg4Epigenetics_ENCFF385EPA\ type bigBed 5\ visibility squish\ OsteoclastomaCellLineHs706_T_CNhs11835_ctss_rev Cl:Hs706_T- bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse 0 1502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs706_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteoclastomaCellLineHs706_T_CNhs11835_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ OsteoclastomaCellLineHs706_T_CNhs11835_tpm_rev Cl:Hs706_T- bigWig osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse 1 1502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/osteoclastoma%20cell%20line%3aHs%20706%2eT.CNhs11835.10704-109H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel osteoclastoma cell line:Hs 706_T_CNhs11835_10704-109H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10704-109H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs706_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OsteoclastomaCellLineHs706_T_CNhs11835_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10704-109H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF717IHQ ENCSR029LBT Peak bigBed 5 HepG2 FOXP1 peaks 4 1502 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/a02f259a-6492-4d35-a83a-5f26957941c0/ENCFF717IHQ.bigBed\ labelFields none\ longLabel HepG2 FOXP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR029LBT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF717IHQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF617ESX ENCSR153IUB Signal bigWig Mucosa of urinary bladder tissue male adult 26 years ATAC signal 2 1502 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/416801f0-0968-41d1-9bf4-0a5a6fc15666/ENCFF617ESX.bigWig\ color 2,199,185\ longLabel Mucosa of urinary bladder tissue male adult 26 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153IUB Signal\ track wgEncodeReg4Epigenetics_ENCFF617ESX\ type bigWig\ visibility full\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_fwd Cl:Hs769_T+ bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward 0 1503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs769_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_fwd Cl:Hs769_T+ bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward 1 1503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs769_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF574LOW ENCSR030TJP Peak bigBed 5 K562 DACH1 peaks 4 1503 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/9eddd0e9-edd0-4f06-b11a-e1a2f1dbd1c3/ENCFF574LOW.bigBed\ labelFields none\ longLabel K562 DACH1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR030TJP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF574LOW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF074OMY ENCSR153LHP Peak bigBed 5 Foreskin fibroblast male newborn DNase peak 4 1503 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/9b91d08f-8f10-4ba6-9aec-de6b47743ec7/ENCFF074OMY.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin fibroblast male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153LHP Peak\ track wgEncodeReg4Epigenetics_ENCFF074OMY\ type bigBed 5\ visibility squish\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_rev Cl:Hs769_T- bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse 0 1504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs769_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_rev Cl:Hs769_T- bigWig transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse 1 1504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/transitional%20cell%20carcinoma%20cell%20line%3aHs%20769%2eT.CNhs11837.10707-109H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel transitional cell carcinoma cell line:Hs 769_T_CNhs11837_10707-109H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10707-109H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs769_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TransitionalCellCarcinomaCellLineHs769_T_CNhs11837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10707-109H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF649OQC ENCSR030TJP Signal bigWig K562 DACH1 ENCSR030TJP signal 2 1504 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/9ab99c09-4392-47c0-a22c-ef05b18a78b1/ENCFF649OQC.bigWig\ color 254,75,173\ longLabel K562 DACH1 ENCSR030TJP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR030TJP Signal\ track wgEncodeReg4TfChip_ENCFF649OQC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF329FKR ENCSR153LHP Signal bigWig Foreskin fibroblast male newborn DNase signal 2 1504 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/e720a85a-8569-421d-b4f1-73bd884fa019/ENCFF329FKR.bigWig\ color 6,218,147\ longLabel Foreskin fibroblast male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153LHP Signal\ track wgEncodeReg4Epigenetics_ENCFF329FKR\ type bigWig\ visibility full\ EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_fwd Cl:Hs863_T+ bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward 0 1505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs863_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_fwd Cl:Hs863_T+ bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward 1 1505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs863_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF135ECT ENCSR031ING Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM6A KDM6A peaks 4 1505 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/5a1d0705-4171-4e32-908a-e9b666b3c63a/ENCFF135ECT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM6A KDM6A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031ING Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF135ECT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF703SYA ENCSR153NDQ Peak bigBed 5 Prostate gland tissue male adult 37 years H3K4me3 peak 4 1505 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/927ce6d5-af4c-4603-aec9-085057177402/ENCFF703SYA.bigBed\ color 255,0,0\ longLabel Prostate gland tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153NDQ Peak\ track wgEncodeReg4Epigenetics_ENCFF703SYA\ type bigBed 5\ visibility squish\ EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_rev Cl:Hs863_T- bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse 0 1506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs863_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EwingsSarcomaCellLineHs863_T_CNhs11836_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_rev Cl:Hs863_T- bigWig Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse 1 1506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ewing%27s%20sarcoma%20cell%20line%3aHs%20863%2eT.CNhs11836.10705-109H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ewing's sarcoma cell line:Hs 863_T_CNhs11836_10705-109H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10705-109H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs863_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EwingsSarcomaCellLineHs863_T_CNhs11836_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10705-109H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF126CEJ ENCSR031ING Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM6A KDM6A ENCSR031ING signal 2 1506 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e17e03ac-14dc-45af-8017-51bb9bfb09cf/ENCFF126CEJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM6A KDM6A ENCSR031ING signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031ING Signal\ track wgEncodeReg4TfChip_ENCFF126CEJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF761PKU ENCSR153NDQ Signal bigWig Prostate gland tissue male adult 37 years H3K4me3 signal 2 1506 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/67c13d72-8a6e-4de2-b73d-6301da716197/ENCFF761PKU.bigWig\ color 255,0,0\ longLabel Prostate gland tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153NDQ Signal\ track wgEncodeReg4Epigenetics_ENCFF761PKU\ type bigWig\ visibility full\ PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_fwd Cl:Hs925_T+ bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward 0 1507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs925_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_fwd Cl:Hs925_T+ bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward 1 1507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs925_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF892SFM ENCSR031KWR Peak bigBed 5 Adrenal gland tissue female adult (53 years) POLR2A peaks 4 1507 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/fcea2f78-cb68-4fc6-88a6-6652938cbb6e/ENCFF892SFM.bigBed\ labelFields none\ longLabel Adrenal gland tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031KWR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF892SFM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF169QRU ENCSR153SGD Peak bigBed 5 HUES48 H3K4me3 peak 4 1507 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/4c8aa902-9485-429c-9f69-721b670789a2/ENCFF169QRU.bigBed\ color 255,0,0\ longLabel HUES48 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153SGD Peak\ track wgEncodeReg4Epigenetics_ENCFF169QRU\ type bigBed 5\ visibility squish\ PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_rev Cl:Hs925_T- bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse 0 1508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hs925_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_rev Cl:Hs925_T- bigWig pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse 1 1508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pagetoid%20sarcoma%20cell%20line%3aHs%20925%2eT.CNhs11856.10732-110B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pagetoid sarcoma cell line:Hs 925_T_CNhs11856_10732-110B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10732-110B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hs925_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PagetoidSarcomaCellLineHs925_T_CNhs11856_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10732-110B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF886KGP ENCSR031KWR Signal bigWig Adrenal gland tissue female adult (53 years) POLR2A ENCSR031KWR signal 2 1508 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/964a476c-8d25-4e9d-8ef9-3d208d89b2ce/ENCFF886KGP.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (53 years) POLR2A ENCSR031KWR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031KWR Signal\ track wgEncodeReg4TfChip_ENCFF886KGP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF052KDI ENCSR153SGD Signal bigWig HUES48 H3K4me3 signal 2 1508 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/68f8b3bc-7967-4ab7-ad5b-4e44668f9394/ENCFF052KDI.bigWig\ color 255,0,0\ longLabel HUES48 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR153SGD Signal\ track wgEncodeReg4Epigenetics_ENCFF052KDI\ type bigWig\ visibility full\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_ctss_fwd Cl:HSC-3+ bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward 0 1509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHSC-3.CNhs11717.10545-107H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10545-107H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSC-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_fwd Cl:HSC-3+ bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward 1 1509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHSC-3.CNhs11717.10545-107H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10545-107H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSC-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF663LIE ENCSR031PXV Peak bigBed 5 Endothelial cell CTCF peaks 4 1509 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/12/0b70750a-ffb1-4fca-8ce4-603590bfea8a/ENCFF663LIE.bigBed\ labelFields none\ longLabel Endothelial cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031PXV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF663LIE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF545KGE ENCSR154NOT Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase peak 4 1509 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/714fd6fb-3c59-4afb-9f21-faf20a1e3a04/ENCFF545KGE.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154NOT Peak\ track wgEncodeReg4Epigenetics_ENCFF545KGE\ type bigBed 5\ visibility squish\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_ctss_rev Cl:HSC-3- bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_reverse 0 1510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHSC-3.CNhs11717.10545-107H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10545-107H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSC-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_rev Cl:HSC-3- bigWig oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_reverse 1 1510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aHSC-3.CNhs11717.10545-107H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:HSC-3_CNhs11717_10545-107H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10545-107H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSC-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineHSC3_CNhs11717_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10545-107H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF084YDG ENCSR031PXV Signal bigWig Endothelial cell CTCF ENCSR031PXV signal 2 1510 221 126 107 238 190 181 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/12/d1503232-fc54-4eda-b62d-955fda3cbfe3/ENCFF084YDG.bigWig\ color 221,126,107\ longLabel Endothelial cell CTCF ENCSR031PXV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031PXV Signal\ track wgEncodeReg4TfChip_ENCFF084YDG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF510AEM ENCSR154NOT Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase signal 2 1510 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/5223791f-ceb9-43fa-944a-a025221ace3d/ENCFF510AEM.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154NOT Signal\ track wgEncodeReg4Epigenetics_ENCFF510AEM\ type bigWig\ visibility full\ KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_fwd Cl:HSKTC+ bigWig Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_forward 0 1511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Krukenberg%20tumor%20cell%20line%3aHSKTC.CNhs11822.10687-109F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSKTC+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ KrukenbergTumorCellLineHSKTC_CNhs11822_tpm_fwd Cl:HSKTC+ bigWig Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_forward 1 1511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Krukenberg%20tumor%20cell%20line%3aHSKTC.CNhs11822.10687-109F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSKTC+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track KrukenbergTumorCellLineHSKTC_CNhs11822_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF836GHX ENCSR031TFS Peak bigBed 5 K562 POLR2A peaks 4 1511 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/3ea75e17-a195-422f-8d0f-ce753169c86e/ENCFF836GHX.bigBed\ labelFields none\ longLabel K562 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031TFS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF836GHX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF929NDJ ENCSR154NYM Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours DNase peak 4 1511 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/f99378e9-1018-4a49-aeee-f07d2d455779/ENCFF929NDJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154NYM Peak\ track wgEncodeReg4Epigenetics_ENCFF929NDJ\ type bigBed 5\ visibility squish\ KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_rev Cl:HSKTC- bigWig Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse 0 1512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Krukenberg%20tumor%20cell%20line%3aHSKTC.CNhs11822.10687-109F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSKTC-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track KrukenbergTumorCellLineHSKTC_CNhs11822_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ KrukenbergTumorCellLineHSKTC_CNhs11822_tpm_rev Cl:HSKTC- bigWig Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse 1 1512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Krukenberg%20tumor%20cell%20line%3aHSKTC.CNhs11822.10687-109F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Krukenberg tumor cell line:HSKTC_CNhs11822_10687-109F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10687-109F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSKTC-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track KrukenbergTumorCellLineHSKTC_CNhs11822_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10687-109F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF124WLE ENCSR031TFS Signal bigWig K562 POLR2A ENCSR031TFS signal 2 1512 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/71719dc7-fb6e-441e-b91c-4928832055c3/ENCFF124WLE.bigWig\ color 254,75,173\ longLabel K562 POLR2A ENCSR031TFS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031TFS Signal\ track wgEncodeReg4TfChip_ENCFF124WLE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF710XDE ENCSR154NYM Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours DNase signal 2 1512 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/c668a031-82b4-401c-9d4b-7a3ceb616dc4/ENCFF710XDE.bigWig\ color 6,218,147\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 36 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154NYM Signal\ track wgEncodeReg4Epigenetics_ENCFF710XDE\ type bigWig\ visibility full\ MaxillarySinusTumorCellLineHSQ89_CNhs10732_ctss_fwd Cl:HSQ-89+ bigWig maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_forward 0 1513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/maxillary%20sinus%20tumor%20cell%20line%3aHSQ-89.CNhs10732.10414-106B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10414-106B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSQ-89+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MaxillarySinusTumorCellLineHSQ89_CNhs10732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9\ urlLabel FANTOM5 Details:\ MaxillarySinusTumorCellLineHSQ89_CNhs10732_tpm_fwd Cl:HSQ-89+ bigWig maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_forward 1 1513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/maxillary%20sinus%20tumor%20cell%20line%3aHSQ-89.CNhs10732.10414-106B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10414-106B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSQ-89+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MaxillarySinusTumorCellLineHSQ89_CNhs10732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF680LVJ ENCSR031URL Peak bigBed 5 HepG2 XRCC5 peaks 4 1513 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/11ef81cc-f846-46e6-bf69-7fbf4af0990a/ENCFF680LVJ.bigBed\ labelFields none\ longLabel HepG2 XRCC5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031URL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF680LVJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF004VGG ENCSR154OUQ Peak bigBed 5 Omental fat pad tissue female adult 53 years DNase peak 4 1513 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/d33f2124-13cc-489b-ad52-4923e15e2878/ENCFF004VGG.bigBed\ color 6,218,147\ labelFields none\ longLabel Omental fat pad tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154OUQ Peak\ track wgEncodeReg4Epigenetics_ENCFF004VGG\ type bigBed 5\ visibility squish\ MaxillarySinusTumorCellLineHSQ89_CNhs10732_ctss_rev Cl:HSQ-89- bigWig maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse 0 1514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/maxillary%20sinus%20tumor%20cell%20line%3aHSQ-89.CNhs10732.10414-106B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10414-106B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HSQ-89-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MaxillarySinusTumorCellLineHSQ89_CNhs10732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9\ urlLabel FANTOM5 Details:\ MaxillarySinusTumorCellLineHSQ89_CNhs10732_tpm_rev Cl:HSQ-89- bigWig maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse 1 1514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/maxillary%20sinus%20tumor%20cell%20line%3aHSQ-89.CNhs10732.10414-106B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel maxillary sinus tumor cell line:HSQ-89_CNhs10732_10414-106B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10414-106B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HSQ-89-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MaxillarySinusTumorCellLineHSQ89_CNhs10732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10414-106B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF406KDQ ENCSR031URL Signal bigWig HepG2 XRCC5 ENCSR031URL signal 2 1514 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e21ede15-e7b0-4abf-b1e2-8a0caba665ac/ENCFF406KDQ.bigWig\ color 137,152,82\ longLabel HepG2 XRCC5 ENCSR031URL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR031URL Signal\ track wgEncodeReg4TfChip_ENCFF406KDQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF724SLN ENCSR154OUQ Signal bigWig Omental fat pad tissue female adult 53 years DNase signal 2 1514 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/28a98090-36c7-456a-9abb-0b486674a8e3/ENCFF724SLN.bigWig\ color 6,218,147\ longLabel Omental fat pad tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154OUQ Signal\ track wgEncodeReg4Epigenetics_ENCFF724SLN\ type bigWig\ visibility full\ FibrosarcomaCellLineHT1080_CNhs11860_ctss_fwd Cl:HT-1080+ bigWig fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward 0 1515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrosarcoma%20cell%20line%3aHT-1080.CNhs11860.10758-110E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10758-110E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HT-1080+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrosarcomaCellLineHT1080_CNhs11860_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2\ urlLabel FANTOM5 Details:\ FibrosarcomaCellLineHT1080_CNhs11860_tpm_fwd Cl:HT-1080+ bigWig fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward 1 1515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrosarcoma%20cell%20line%3aHT-1080.CNhs11860.10758-110E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10758-110E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HT-1080+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track FibrosarcomaCellLineHT1080_CNhs11860_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF256AZN ENCSR032LZZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362 ZNF362 peaks 4 1515 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/47b91602-43da-47cf-a913-f113a8135f64/ENCFF256AZN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362 ZNF362 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR032LZZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF256AZN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF585EVR ENCSR154UWN Peak bigBed 5 Psoas muscle tissue female child 16 years ATAC peak 4 1515 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/a01d88fa-fc00-4863-991b-7552da90fb6e/ENCFF585EVR.bigBed\ color 2,199,185\ longLabel Psoas muscle tissue female child 16 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154UWN Peak\ track wgEncodeReg4Epigenetics_ENCFF585EVR\ type bigBed 5\ visibility squish\ FibrosarcomaCellLineHT1080_CNhs11860_ctss_rev Cl:HT-1080- bigWig fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_reverse 0 1516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrosarcoma%20cell%20line%3aHT-1080.CNhs11860.10758-110E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10758-110E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HT-1080-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrosarcomaCellLineHT1080_CNhs11860_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2\ urlLabel FANTOM5 Details:\ FibrosarcomaCellLineHT1080_CNhs11860_tpm_rev Cl:HT-1080- bigWig fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_reverse 1 1516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/fibrosarcoma%20cell%20line%3aHT-1080.CNhs11860.10758-110E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel fibrosarcoma cell line:HT-1080_CNhs11860_10758-110E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10758-110E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HT-1080-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track FibrosarcomaCellLineHT1080_CNhs11860_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10758-110E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF326QIF ENCSR032LZZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362 ZNF362 ENCSR032LZZ signal 2 1516 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/01621625-c1b2-4853-9939-f8534fdb3a04/ENCFF326QIF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362 ZNF362 ENCSR032LZZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR032LZZ Signal\ track wgEncodeReg4TfChip_ENCFF326QIF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF718EPV ENCSR154UWN Signal bigWig Psoas muscle tissue female child 16 years ATAC signal 2 1516 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/060b5a0d-26e1-49d3-a24d-7bac7270a72e/ENCFF718EPV.bigWig\ color 2,199,185\ longLabel Psoas muscle tissue female child 16 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154UWN Signal\ track wgEncodeReg4Epigenetics_ENCFF718EPV\ type bigWig\ visibility full\ MixedMullerianTumorCellLineHTMMT_CNhs11944_ctss_fwd Cl:HTMMT+ bigWig mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_forward 0 1517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mixed%20mullerian%20tumor%20cell%20line%3aHTMMT.CNhs11944.10689-109F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10689-109F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HTMMT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MixedMullerianTumorCellLineHTMMT_CNhs11944_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5\ urlLabel FANTOM5 Details:\ MixedMullerianTumorCellLineHTMMT_CNhs11944_tpm_fwd Cl:HTMMT+ bigWig mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_forward 1 1517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mixed%20mullerian%20tumor%20cell%20line%3aHTMMT.CNhs11944.10689-109F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10689-109F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HTMMT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MixedMullerianTumorCellLineHTMMT_CNhs11944_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF820WZN ENCSR033FDW Peak bigBed 5 Stomach tissue male adult (37 years) POLR2AphosphoS5 peaks 4 1517 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/3a88f458-e80a-4471-a05f-3ad51ffb862b/ENCFF820WZN.bigBed\ labelFields none\ longLabel Stomach tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033FDW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF820WZN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF656TJR ENCSR154YPL Peak bigBed 5 Large intestine tissue female embryo 110 days DNase peak 4 1517 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/55a511df-2987-475a-a07a-7a91368b4ccb/ENCFF656TJR.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 110 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154YPL Peak\ track wgEncodeReg4Epigenetics_ENCFF656TJR\ type bigBed 5\ visibility squish\ MixedMullerianTumorCellLineHTMMT_CNhs11944_ctss_rev Cl:HTMMT- bigWig mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_reverse 0 1518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mixed%20mullerian%20tumor%20cell%20line%3aHTMMT.CNhs11944.10689-109F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10689-109F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HTMMT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MixedMullerianTumorCellLineHTMMT_CNhs11944_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5\ urlLabel FANTOM5 Details:\ MixedMullerianTumorCellLineHTMMT_CNhs11944_tpm_rev Cl:HTMMT- bigWig mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_reverse 1 1518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mixed%20mullerian%20tumor%20cell%20line%3aHTMMT.CNhs11944.10689-109F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mixed mullerian tumor cell line:HTMMT_CNhs11944_10689-109F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10689-109F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HTMMT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MixedMullerianTumorCellLineHTMMT_CNhs11944_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10689-109F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF351MMC ENCSR033FDW Signal bigWig Stomach tissue male adult (37 years) POLR2AphosphoS5 ENCSR033FDW signal 2 1518 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/918abe73-b6a0-4ce3-84a4-bcf1977bf776/ENCFF351MMC.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (37 years) POLR2AphosphoS5 ENCSR033FDW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033FDW Signal\ track wgEncodeReg4TfChip_ENCFF351MMC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF480NTP ENCSR154YPL Signal bigWig Large intestine tissue female embryo 110 days DNase signal 2 1518 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/9e972e26-9a78-4606-95c3-c89b61b28bcc/ENCFF480NTP.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 110 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154YPL Signal\ track wgEncodeReg4Epigenetics_ENCFF480NTP\ type bigWig\ visibility full\ SerousCystadenocarcinomaCellLineHTOA_CNhs11827_ctss_fwd Cl:HTOA+ bigWig serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_forward 0 1519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20cystadenocarcinoma%20cell%20line%3aHTOA.CNhs11827.10693-109F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10693-109F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HTOA+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousCystadenocarcinomaCellLineHTOA_CNhs11827_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9\ urlLabel FANTOM5 Details:\ SerousCystadenocarcinomaCellLineHTOA_CNhs11827_tpm_fwd Cl:HTOA+ bigWig serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_forward 1 1519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20cystadenocarcinoma%20cell%20line%3aHTOA.CNhs11827.10693-109F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10693-109F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HTOA+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousCystadenocarcinomaCellLineHTOA_CNhs11827_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF300RYK ENCSR033KMZ Peak bigBed 5 Thyroid gland tissue male adult (54 years) CTCF peaks 4 1519 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/2760a5ec-1373-421d-89cf-1a7612bde39c/ENCFF300RYK.bigBed\ labelFields none\ longLabel Thyroid gland tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033KMZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF300RYK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF368ZMU ENCSR154ZNQ Peak bigBed 5 Heart tissue female embryo 105 days DNase peak 4 1519 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/83fdf64f-b885-4083-b5e3-f75774273c0a/ENCFF368ZMU.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154ZNQ Peak\ track wgEncodeReg4Epigenetics_ENCFF368ZMU\ type bigBed 5\ visibility squish\ SerousCystadenocarcinomaCellLineHTOA_CNhs11827_ctss_rev Cl:HTOA- bigWig serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_reverse 0 1520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20cystadenocarcinoma%20cell%20line%3aHTOA.CNhs11827.10693-109F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10693-109F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HTOA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousCystadenocarcinomaCellLineHTOA_CNhs11827_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9\ urlLabel FANTOM5 Details:\ SerousCystadenocarcinomaCellLineHTOA_CNhs11827_tpm_rev Cl:HTOA- bigWig serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_reverse 1 1520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20cystadenocarcinoma%20cell%20line%3aHTOA.CNhs11827.10693-109F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel serous cystadenocarcinoma cell line:HTOA_CNhs11827_10693-109F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10693-109F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HTOA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousCystadenocarcinomaCellLineHTOA_CNhs11827_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10693-109F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF615PBA ENCSR033KMZ Signal bigWig Thyroid gland tissue male adult (54 years) CTCF ENCSR033KMZ signal 2 1520 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/9b56e230-ce65-4357-8768-6e6489b09a14/ENCFF615PBA.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue male adult (54 years) CTCF ENCSR033KMZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033KMZ Signal\ track wgEncodeReg4TfChip_ENCFF615PBA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF966NUA ENCSR154ZNQ Signal bigWig Heart tissue female embryo 105 days DNase signal 2 1520 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/76951670-b9d0-4ab6-a3b0-27652078304a/ENCFF966NUA.bigWig\ color 6,218,147\ longLabel Heart tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR154ZNQ Signal\ track wgEncodeReg4Epigenetics_ENCFF966NUA\ type bigWig\ visibility full\ SacrococcigealTeratomaCellLineHTST_CNhs11829_ctss_fwd Cl:HTST+ bigWig sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_forward 0 1521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/sacrococcigeal%20teratoma%20cell%20line%3aHTST.CNhs11829.10695-109G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10695-109G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HTST+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SacrococcigealTeratomaCellLineHTST_CNhs11829_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2\ urlLabel FANTOM5 Details:\ SacrococcigealTeratomaCellLineHTST_CNhs11829_tpm_fwd Cl:HTST+ bigWig sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_forward 1 1521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/sacrococcigeal%20teratoma%20cell%20line%3aHTST.CNhs11829.10695-109G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10695-109G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HTST+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SacrococcigealTeratomaCellLineHTST_CNhs11829_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF640VPA ENCSR033NHF Peak bigBed 5 Upper lobe of left lung tissue male adult (54 years) POLR2A peaks 4 1521 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/360b505f-155e-471a-902d-31fc5801cb66/ENCFF640VPA.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033NHF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF640VPA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF760GDC ENCSR155NPL Peak bigBed 5 Renal cortex interstitium tissue male embryo 113 days DNase peak 4 1521 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/b61867c5-7c88-4ba1-9e72-2ad175a001ac/ENCFF760GDC.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal cortex interstitium tissue male embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR155NPL Peak\ track wgEncodeReg4Epigenetics_ENCFF760GDC\ type bigBed 5\ visibility squish\ SacrococcigealTeratomaCellLineHTST_CNhs11829_ctss_rev Cl:HTST- bigWig sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_reverse 0 1522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/sacrococcigeal%20teratoma%20cell%20line%3aHTST.CNhs11829.10695-109G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10695-109G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HTST-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SacrococcigealTeratomaCellLineHTST_CNhs11829_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2\ urlLabel FANTOM5 Details:\ SacrococcigealTeratomaCellLineHTST_CNhs11829_tpm_rev Cl:HTST- bigWig sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_reverse 1 1522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/sacrococcigeal%20teratoma%20cell%20line%3aHTST.CNhs11829.10695-109G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel sacrococcigeal teratoma cell line:HTST_CNhs11829_10695-109G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10695-109G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HTST-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SacrococcigealTeratomaCellLineHTST_CNhs11829_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10695-109G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF797VBW ENCSR033NHF Signal bigWig Upper lobe of left lung tissue male adult (54 years) POLR2A ENCSR033NHF signal 2 1522 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/0c51dda0-6852-47b8-836f-3bec53a6108c/ENCFF797VBW.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (54 years) POLR2A ENCSR033NHF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033NHF Signal\ track wgEncodeReg4TfChip_ENCFF797VBW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF321QIH ENCSR155NPL Signal bigWig Renal cortex interstitium tissue male embryo 113 days DNase signal 2 1522 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/a10d7ef7-dd2e-407d-b1db-f0197cda1046/ENCFF321QIH.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue male embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR155NPL Signal\ track wgEncodeReg4Epigenetics_ENCFF321QIH\ type bigWig\ visibility full\ MesenchymalStemCellLineHu5E18_CNhs11718_ctss_fwd Cl:Hu5/E18+ bigWig mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_forward 0 1523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cell%20line%3aHu5%20E18.CNhs11718.10568-108B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10568-108B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hu5/E18+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesenchymalStemCellLineHu5E18_CNhs11718_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellLineHu5E18_CNhs11718_tpm_fwd Cl:Hu5/E18+ bigWig mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_forward 1 1523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cell%20line%3aHu5%20E18.CNhs11718.10568-108B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10568-108B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hu5/E18+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesenchymalStemCellLineHu5E18_CNhs11718_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF900JRP ENCSR033NQK Peak bigBed 5 K562 ZNF830 peaks 4 1523 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/623ab38b-4fd5-4198-932e-2b6985d0e092/ENCFF900JRP.bigBed\ labelFields none\ longLabel K562 ZNF830 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033NQK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF900JRP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF237KCS ENCSR156CLC Peak bigBed 5 Brain tissue female embryo 96 days DNase peak 4 1523 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d87de6fc-d287-4b94-9bf6-6ce75720ecd2/ENCFF237KCS.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue female embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR156CLC Peak\ track wgEncodeReg4Epigenetics_ENCFF237KCS\ type bigBed 5\ visibility squish\ MesenchymalStemCellLineHu5E18_CNhs11718_ctss_rev Cl:Hu5/E18- bigWig mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_reverse 0 1524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cell%20line%3aHu5%20E18.CNhs11718.10568-108B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10568-108B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Hu5/E18-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesenchymalStemCellLineHu5E18_CNhs11718_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellLineHu5E18_CNhs11718_tpm_rev Cl:Hu5/E18- bigWig mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_reverse 1 1524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cell%20line%3aHu5%20E18.CNhs11718.10568-108B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cell line:Hu5/E18_CNhs11718_10568-108B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10568-108B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Hu5/E18-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesenchymalStemCellLineHu5E18_CNhs11718_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10568-108B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF034OVA ENCSR033NQK Signal bigWig K562 ZNF830 ENCSR033NQK signal 2 1524 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/e524c542-d1ff-4481-9095-b5736e6dd1c0/ENCFF034OVA.bigWig\ color 254,75,173\ longLabel K562 ZNF830 ENCSR033NQK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033NQK Signal\ track wgEncodeReg4TfChip_ENCFF034OVA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF363XWV ENCSR156CLC Signal bigWig Brain tissue female embryo 96 days DNase signal 2 1524 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c0ed05cd-6590-41f2-9546-e6c5484c279d/ENCFF363XWV.bigWig\ color 6,218,147\ longLabel Brain tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR156CLC Signal\ track wgEncodeReg4Epigenetics_ENCFF363XWV\ type bigWig\ visibility full\ BileDuctCarcinomaCellLineHuCCT1_CNhs10750_ctss_fwd Cl:HuCCT1+ bigWig bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_forward 0 1525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aHuCCT1.CNhs10750.10432-106D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10432-106D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuCCT1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BileDuctCarcinomaCellLineHuCCT1_CNhs10750_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9\ urlLabel FANTOM5 Details:\ BileDuctCarcinomaCellLineHuCCT1_CNhs10750_tpm_fwd Cl:HuCCT1+ bigWig bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_forward 1 1525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aHuCCT1.CNhs10750.10432-106D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10432-106D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuCCT1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BileDuctCarcinomaCellLineHuCCT1_CNhs10750_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF408LBA ENCSR033VAZ Peak bigBed 5 K562 TARDBP peaks 4 1525 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/fa7c0d95-6189-4e02-9a8e-06759dd34342/ENCFF408LBA.bigBed\ labelFields none\ longLabel K562 TARDBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033VAZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF408LBA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF504DNA ENCSR156MYA Peak bigBed 5 Skin epidermis tissue male adult 65 years H3K27ac peak 4 1525 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/530c42a3-c6f0-475b-87ad-ea032ada9f0a/ENCFF504DNA.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue male adult 65 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR156MYA Peak\ track wgEncodeReg4Epigenetics_ENCFF504DNA\ type bigBed 5\ visibility squish\ BileDuctCarcinomaCellLineHuCCT1_CNhs10750_ctss_rev Cl:HuCCT1- bigWig bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_reverse 0 1526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aHuCCT1.CNhs10750.10432-106D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10432-106D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuCCT1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BileDuctCarcinomaCellLineHuCCT1_CNhs10750_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9\ urlLabel FANTOM5 Details:\ BileDuctCarcinomaCellLineHuCCT1_CNhs10750_tpm_rev Cl:HuCCT1- bigWig bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_reverse 1 1526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aHuCCT1.CNhs10750.10432-106D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bile duct carcinoma cell line:HuCCT1_CNhs10750_10432-106D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10432-106D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuCCT1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BileDuctCarcinomaCellLineHuCCT1_CNhs10750_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10432-106D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF072RST ENCSR033VAZ Signal bigWig K562 TARDBP ENCSR033VAZ signal 2 1526 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/2b6c30ed-2ccb-4bc3-80f7-bd5fe63baea4/ENCFF072RST.bigWig\ color 254,75,173\ longLabel K562 TARDBP ENCSR033VAZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR033VAZ Signal\ track wgEncodeReg4TfChip_ENCFF072RST\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF778DIW ENCSR156MYA Signal bigWig Skin epidermis tissue male adult 65 years H3K27ac signal 2 1526 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/17576528-4129-452f-bc4f-2fc4fe4a26f6/ENCFF778DIW.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue male adult 65 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR156MYA Signal\ track wgEncodeReg4Epigenetics_ENCFF778DIW\ type bigWig\ visibility full\ CholangiocellularCarcinomaCellLineHuH28_CNhs11283_ctss_fwd Cl:HuH-28+ bigWig cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_forward 0 1527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cholangiocellular%20carcinoma%20cell%20line%3aHuH-28.CNhs11283.10536-107G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10536-107G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuH-28+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CholangiocellularCarcinomaCellLineHuH28_CNhs11283_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5\ urlLabel FANTOM5 Details:\ CholangiocellularCarcinomaCellLineHuH28_CNhs11283_tpm_fwd Cl:HuH-28+ bigWig cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_forward 1 1527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cholangiocellular%20carcinoma%20cell%20line%3aHuH-28.CNhs11283.10536-107G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10536-107G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuH-28+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CholangiocellularCarcinomaCellLineHuH28_CNhs11283_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF669BWC ENCSR035OXA Peak bigBed 5 A549 CTCF peaks 4 1527 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/2c729a85-b597-416f-ae46-cdd29d49db5f/ENCFF669BWC.bigBed\ labelFields none\ longLabel A549 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR035OXA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF669BWC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF549XDV ENCSR156XNC Peak bigBed 5 Peripheral blood mononuclear cell female adult 28 years H3K27ac peak 4 1527 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/af3b5b2f-4a5e-4c44-88cb-02699aa85c69/ENCFF549XDV.bigBed\ color 181,145,0\ longLabel Peripheral blood mononuclear cell female adult 28 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR156XNC Peak\ track wgEncodeReg4Epigenetics_ENCFF549XDV\ type bigBed 5\ visibility squish\ CholangiocellularCarcinomaCellLineHuH28_CNhs11283_ctss_rev Cl:HuH-28- bigWig cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_reverse 0 1528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cholangiocellular%20carcinoma%20cell%20line%3aHuH-28.CNhs11283.10536-107G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10536-107G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuH-28-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CholangiocellularCarcinomaCellLineHuH28_CNhs11283_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5\ urlLabel FANTOM5 Details:\ CholangiocellularCarcinomaCellLineHuH28_CNhs11283_tpm_rev Cl:HuH-28- bigWig cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_reverse 1 1528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cholangiocellular%20carcinoma%20cell%20line%3aHuH-28.CNhs11283.10536-107G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cholangiocellular carcinoma cell line:HuH-28_CNhs11283_10536-107G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10536-107G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuH-28-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CholangiocellularCarcinomaCellLineHuH28_CNhs11283_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10536-107G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF032QWY ENCSR035OXA Signal bigWig A549 CTCF ENCSR035OXA signal 2 1528 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/8e6c539c-88ce-4bad-bdc9-106c9f458d0e/ENCFF032QWY.bigWig\ color 130,163,45\ longLabel A549 CTCF ENCSR035OXA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR035OXA Signal\ track wgEncodeReg4TfChip_ENCFF032QWY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF518PSI ENCSR156XNC Signal bigWig Peripheral blood mononuclear cell female adult 28 years H3K27ac signal 2 1528 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d50b7c51-4e38-49d7-bcd7-9927df204f81/ENCFF518PSI.bigWig\ color 181,145,0\ longLabel Peripheral blood mononuclear cell female adult 28 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR156XNC Signal\ track wgEncodeReg4Epigenetics_ENCFF518PSI\ type bigWig\ visibility full\ HepatoblastomaCellLineHuH6_CNhs11742_ctss_fwd Cl:HuH-6+ bigWig hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_forward 0 1529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoblastoma%20cell%20line%3aHuH-6.CNhs11742.10633-108I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10633-108I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuH-6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatoblastomaCellLineHuH6_CNhs11742_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3\ urlLabel FANTOM5 Details:\ HepatoblastomaCellLineHuH6_CNhs11742_tpm_fwd Cl:HuH-6+ bigWig hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_forward 1 1529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoblastoma%20cell%20line%3aHuH-6.CNhs11742.10633-108I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10633-108I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuH-6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatoblastomaCellLineHuH6_CNhs11742_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF922ILX ENCSR036QIR Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F3 E2F3 peaks 4 1529 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/379a0083-0afb-4d01-bc9b-5260f78ca6ac/ENCFF922ILX.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F3 E2F3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR036QIR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF922ILX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF916WSX ENCSR157EML Peak bigBed 5 Middle frontal area 46 tissue female adult 75 years H3K4me3 peak 4 1529 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/3b9fd378-764a-4c21-bd80-944d14bbd6a9/ENCFF916WSX.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 75 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR157EML Peak\ track wgEncodeReg4Epigenetics_ENCFF916WSX\ type bigBed 5\ visibility squish\ HepatoblastomaCellLineHuH6_CNhs11742_ctss_rev Cl:HuH-6- bigWig hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_reverse 0 1530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoblastoma%20cell%20line%3aHuH-6.CNhs11742.10633-108I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10633-108I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuH-6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatoblastomaCellLineHuH6_CNhs11742_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3\ urlLabel FANTOM5 Details:\ HepatoblastomaCellLineHuH6_CNhs11742_tpm_rev Cl:HuH-6- bigWig hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_reverse 1 1530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoblastoma%20cell%20line%3aHuH-6.CNhs11742.10633-108I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hepatoblastoma cell line:HuH-6_CNhs11742_10633-108I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10633-108I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuH-6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatoblastomaCellLineHuH6_CNhs11742_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10633-108I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF838PBU ENCSR036QIR Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F3 E2F3 ENCSR036QIR signal 2 1530 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/bdc5ebe5-f781-44e1-8a87-933dce26561a/ENCFF838PBU.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F3 E2F3 ENCSR036QIR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR036QIR Signal\ track wgEncodeReg4TfChip_ENCFF838PBU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF576TRI ENCSR157EML Signal bigWig Middle frontal area 46 tissue female adult 75 years H3K4me3 signal 2 1530 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/b3dcfc6c-8186-401c-a0d7-bdff8967ff6a/ENCFF576TRI.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 75 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR157EML Signal\ track wgEncodeReg4Epigenetics_ENCFF576TRI\ type bigWig\ visibility full\ MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_ctss_fwd Cl:HuT102TIB-162+ bigWig mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_forward 0 1531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mycosis%20fungoides%2c%20T%20cell%20lymphoma%20cell%20line%3aHuT%20102%20TIB-162.CNhs11858.10744-110C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10744-110C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuT102TIB-162+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6\ urlLabel FANTOM5 Details:\ MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_tpm_fwd Cl:HuT102TIB-162+ bigWig mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_forward 1 1531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mycosis%20fungoides%2c%20T%20cell%20lymphoma%20cell%20line%3aHuT%20102%20TIB-162.CNhs11858.10744-110C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10744-110C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuT102TIB-162+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF196QOW ENCSR036RHV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAFB2 SAFB2 peaks 4 1531 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/5eb097a3-a08d-428f-bb98-f14a61bb35fa/ENCFF196QOW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAFB2 SAFB2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR036RHV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF196QOW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF249IVZ ENCSR157OSO Peak bigBed 5 Heart right ventricle tissue female adult 47 years ATAC peak 4 1531 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/53f0d7a6-b088-4054-be1a-d80d042de8bd/ENCFF249IVZ.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 47 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR157OSO Peak\ track wgEncodeReg4Epigenetics_ENCFF249IVZ\ type bigBed 5\ visibility squish\ MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_ctss_rev Cl:HuT102TIB-162- bigWig mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_reverse 0 1532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mycosis%20fungoides%2c%20T%20cell%20lymphoma%20cell%20line%3aHuT%20102%20TIB-162.CNhs11858.10744-110C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10744-110C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HuT102TIB-162-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6\ urlLabel FANTOM5 Details:\ MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_tpm_rev Cl:HuT102TIB-162- bigWig mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_reverse 1 1532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mycosis%20fungoides%2c%20T%20cell%20lymphoma%20cell%20line%3aHuT%20102%20TIB-162.CNhs11858.10744-110C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mycosis fungoides, T cell lymphoma cell line:HuT 102 TIB-162_CNhs11858_10744-110C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10744-110C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HuT102TIB-162-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MycosisFungoidesTCellLymphomaCellLineHuT102TIB162_CNhs11858_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10744-110C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF535WQI ENCSR036RHV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAFB2 SAFB2 ENCSR036RHV signal 2 1532 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/3e7d3650-bd18-44e9-9383-6196ad86ee6b/ENCFF535WQI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAFB2 SAFB2 ENCSR036RHV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR036RHV Signal\ track wgEncodeReg4TfChip_ENCFF535WQI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF460UKZ ENCSR157OSO Signal bigWig Heart right ventricle tissue female adult 47 years ATAC signal 2 1532 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/f69afcb0-b58d-4d71-b517-fb1ebd46f5e2/ENCFF460UKZ.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR157OSO Signal\ track wgEncodeReg4Epigenetics_ENCFF460UKZ\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_ctss_fwd Cl:HYT-1+ bigWig acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_forward 0 1533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M1%29%20cell%20line%3aHYT-1.CNhs13054.10828-111C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10828-111C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HYT-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_tpm_fwd Cl:HYT-1+ bigWig acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_forward 1 1533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M1%29%20cell%20line%3aHYT-1.CNhs13054.10828-111C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10828-111C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HYT-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF185GWT ENCSR037GKL Peak bigBed 5 Stomach tissue male adult (54 years) CTCF peaks 4 1533 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/02/11/e095c06e-eb32-4e9d-8ec4-da333dc00cac/ENCFF185GWT.bigBed\ labelFields none\ longLabel Stomach tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR037GKL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF185GWT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF883JCD ENCSR157WAJ Peak bigBed 5 Stimulated activated memory B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac peak 4 1533 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/6f1c5740-ebcd-466e-af76-96fb4877c75e/ENCFF883JCD.bigBed\ color 181,145,0\ longLabel Stimulated activated memory B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR157WAJ Peak\ track wgEncodeReg4Epigenetics_ENCFF883JCD\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_ctss_rev Cl:HYT-1- bigWig acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_reverse 0 1534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M1%29%20cell%20line%3aHYT-1.CNhs13054.10828-111C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10828-111C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:HYT-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_tpm_rev Cl:HYT-1- bigWig acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_reverse 1 1534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M1%29%20cell%20line%3aHYT-1.CNhs13054.10828-111C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M1) cell line:HYT-1_CNhs13054_10828-111C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10828-111C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:HYT-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM1CellLineHYT1_CNhs13054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10828-111C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF034PJC ENCSR037GKL Signal bigWig Stomach tissue male adult (54 years) CTCF ENCSR037GKL signal 2 1534 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/f91b3334-138e-4379-9eca-aa00932a28a7/ENCFF034PJC.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (54 years) CTCF ENCSR037GKL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR037GKL Signal\ track wgEncodeReg4TfChip_ENCFF034PJC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF115FLM ENCSR157WAJ Signal bigWig Stimulated activated memory B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac signal 2 1534 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/87d4bab4-7bde-4978-b188-57b00e0e29b7/ENCFF115FLM.bigWig\ color 181,145,0\ longLabel Stimulated activated memory B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR157WAJ Signal\ track wgEncodeReg4Epigenetics_ENCFF115FLM\ type bigWig\ visibility full\ LargeCellLungCarcinomaCellLineIALM_CNhs11277_ctss_fwd Cl:IA-LM+ bigWig large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_forward 0 1535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aIA-LM.CNhs11277.10509-107D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10509-107D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:IA-LM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellLungCarcinomaCellLineIALM_CNhs11277_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5\ urlLabel FANTOM5 Details:\ LargeCellLungCarcinomaCellLineIALM_CNhs11277_tpm_fwd Cl:IA-LM+ bigWig large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_forward 1 1535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aIA-LM.CNhs11277.10509-107D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10509-107D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:IA-LM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellLungCarcinomaCellLineIALM_CNhs11277_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF104YGG ENCSR038DJJ Peak bigBed 5 K562 SMAD1 peaks 4 1535 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/6cfd59f6-a998-486a-bf50-823d3810e587/ENCFF104YGG.bigBed\ labelFields none\ longLabel K562 SMAD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038DJJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF104YGG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF993OUH ENCSR158UEK Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak 4 1535 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c75cb5e9-aedc-49a6-b13d-617fe18ad732/ENCFF993OUH.bigBed\ color 255,0,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR158UEK Peak\ track wgEncodeReg4Epigenetics_ENCFF993OUH\ type bigBed 5\ visibility squish\ LargeCellLungCarcinomaCellLineIALM_CNhs11277_ctss_rev Cl:IA-LM- bigWig large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_reverse 0 1536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aIA-LM.CNhs11277.10509-107D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10509-107D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:IA-LM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LargeCellLungCarcinomaCellLineIALM_CNhs11277_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5\ urlLabel FANTOM5 Details:\ LargeCellLungCarcinomaCellLineIALM_CNhs11277_tpm_rev Cl:IA-LM- bigWig large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_reverse 1 1536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aIA-LM.CNhs11277.10509-107D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel large cell lung carcinoma cell line:IA-LM_CNhs11277_10509-107D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10509-107D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:IA-LM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LargeCellLungCarcinomaCellLineIALM_CNhs11277_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10509-107D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF500DJF ENCSR038DJJ Signal bigWig K562 SMAD1 ENCSR038DJJ signal 2 1536 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/6d3e5658-e4c9-4c95-8ddc-4c94753d57cd/ENCFF500DJF.bigWig\ color 254,75,173\ longLabel K562 SMAD1 ENCSR038DJJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038DJJ Signal\ track wgEncodeReg4TfChip_ENCFF500DJF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF612AIR ENCSR158UEK Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal 2 1536 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/42a940bf-6057-4c22-ba06-68332f8a4361/ENCFF612AIR.bigWig\ color 255,0,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR158UEK Signal\ track wgEncodeReg4Epigenetics_ENCFF612AIR\ type bigWig\ visibility full\ AdenocarcinomaCellLineIM95m_CNhs11882_ctss_fwd Cl:IM95m+ bigWig adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_forward 0 1537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adenocarcinoma%20cell%20line%3aIM95m.CNhs11882.10796-110I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10796-110I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:IM95m+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AdenocarcinomaCellLineIM95m_CNhs11882_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4\ urlLabel FANTOM5 Details:\ AdenocarcinomaCellLineIM95m_CNhs11882_tpm_fwd Cl:IM95m+ bigWig adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_forward 1 1537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adenocarcinoma%20cell%20line%3aIM95m.CNhs11882.10796-110I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10796-110I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:IM95m+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AdenocarcinomaCellLineIM95m_CNhs11882_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF370ILR ENCSR038FOS Peak bigBed 5 Suprapubic skin tissue male adult (54 years) CTCF peaks 4 1537 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/38e4e757-6db4-4414-8c41-3a358f6a0d2d/ENCFF370ILR.bigBed\ labelFields none\ longLabel Suprapubic skin tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038FOS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF370ILR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF066LFU ENCSR158YXM Peak bigBed 5 Liver tissue embryo 59 days and embryo 80 days DNase peak 4 1537 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/a558d424-153a-46e6-8ef3-5d4ff97fc2cb/ENCFF066LFU.bigBed\ color 6,218,147\ labelFields none\ longLabel Liver tissue embryo 59 days and embryo 80 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR158YXM Peak\ track wgEncodeReg4Epigenetics_ENCFF066LFU\ type bigBed 5\ visibility squish\ AdenocarcinomaCellLineIM95m_CNhs11882_ctss_rev Cl:IM95m- bigWig adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_reverse 0 1538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adenocarcinoma%20cell%20line%3aIM95m.CNhs11882.10796-110I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10796-110I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:IM95m-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AdenocarcinomaCellLineIM95m_CNhs11882_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4\ urlLabel FANTOM5 Details:\ AdenocarcinomaCellLineIM95m_CNhs11882_tpm_rev Cl:IM95m- bigWig adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_reverse 1 1538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adenocarcinoma%20cell%20line%3aIM95m.CNhs11882.10796-110I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adenocarcinoma cell line:IM95m_CNhs11882_10796-110I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10796-110I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:IM95m-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AdenocarcinomaCellLineIM95m_CNhs11882_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10796-110I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF848HOS ENCSR038FOS Signal bigWig Suprapubic skin tissue male adult (54 years) CTCF ENCSR038FOS signal 2 1538 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/46030d74-931c-4ead-b8b2-27affd73abe0/ENCFF848HOS.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (54 years) CTCF ENCSR038FOS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038FOS Signal\ track wgEncodeReg4TfChip_ENCFF848HOS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF749WFL ENCSR158YXM Signal bigWig Liver tissue embryo 59 days and embryo 80 days DNase signal 2 1538 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/eb51f7a7-d6c9-4cc5-83cc-861c877df889/ENCFF749WFL.bigWig\ color 6,218,147\ longLabel Liver tissue embryo 59 days and embryo 80 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR158YXM Signal\ track wgEncodeReg4Epigenetics_ENCFF749WFL\ type bigWig\ visibility full\ TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_ctss_fwd Cl:ITO-II+ bigWig testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_forward 0 1539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aITO-II.CNhs11876.10786-110H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10786-110H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ITO-II+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_tpm_fwd Cl:ITO-II+ bigWig testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_forward 1 1539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aITO-II.CNhs11876.10786-110H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10786-110H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ITO-II+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF500III ENCSR038GMB Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) GABPA peaks 4 1539 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/ab11df36-eede-4c2d-88b6-148e272a28c2/ENCFF500III.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038GMB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF500III\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF892CAB ENCSR159GFS Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years ATAC peak 4 1539 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/86ed30b2-589f-492d-8a14-eb4feb34ef10/ENCFF892CAB.bigBed\ color 2,199,185\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR159GFS Peak\ track wgEncodeReg4Epigenetics_ENCFF892CAB\ type bigBed 5\ visibility squish\ TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_ctss_rev Cl:ITO-II- bigWig testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_reverse 0 1540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aITO-II.CNhs11876.10786-110H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10786-110H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ITO-II-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_tpm_rev Cl:ITO-II- bigWig testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_reverse 1 1540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aITO-II.CNhs11876.10786-110H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:ITO-II_CNhs11876_10786-110H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10786-110H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ITO-II-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineITOII_CNhs11876_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10786-110H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF365WTX ENCSR038GMB Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) GABPA ENCSR038GMB signal 2 1540 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/e54fbf7a-33a4-4a9e-9bc5-663042a83ec6/ENCFF365WTX.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) GABPA ENCSR038GMB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038GMB Signal\ track wgEncodeReg4TfChip_ENCFF365WTX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF426GUD ENCSR159GFS Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years ATAC signal 2 1540 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/5e85ec73-597a-4f50-83c5-88a3b0986321/ENCFF426GUD.bigWig\ color 2,199,185\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR159GFS Signal\ track wgEncodeReg4Epigenetics_ENCFF426GUD\ type bigWig\ visibility full\ ClearCellCarcinomaCellLineJHOC5_CNhs11745_ctss_fwd Cl:JHOC-5+ bigWig clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_forward 0 1541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aJHOC-5.CNhs11745.10638-108I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10638-108I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHOC-5+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ClearCellCarcinomaCellLineJHOC5_CNhs11745_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8\ urlLabel FANTOM5 Details:\ ClearCellCarcinomaCellLineJHOC5_CNhs11745_tpm_fwd Cl:JHOC-5+ bigWig clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_forward 1 1541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aJHOC-5.CNhs11745.10638-108I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10638-108I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHOC-5+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ClearCellCarcinomaCellLineJHOC5_CNhs11745_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF951HFC ENCSR038RXU Peak bigBed 5 MCF-7 stably expressing GABPA GABPA peaks 4 1541 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/2564043b-3dd4-4fb1-b530-1d9ebaf994a0/ENCFF951HFC.bigBed\ labelFields none\ longLabel MCF-7 stably expressing GABPA GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038RXU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF951HFC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF945WMR ENCSR160VHJ Peak bigBed 5 Central memory CD8-positive, alpha-beta T cell male adult 36 years DNase peak 4 1541 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/89649767-e6dc-4fbc-8dae-65ac70dadf96/ENCFF945WMR.bigBed\ color 6,218,147\ labelFields none\ longLabel Central memory CD8-positive, alpha-beta T cell male adult 36 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR160VHJ Peak\ track wgEncodeReg4Epigenetics_ENCFF945WMR\ type bigBed 5\ visibility squish\ ClearCellCarcinomaCellLineJHOC5_CNhs11745_ctss_rev Cl:JHOC-5- bigWig clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_reverse 0 1542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aJHOC-5.CNhs11745.10638-108I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10638-108I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHOC-5-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ClearCellCarcinomaCellLineJHOC5_CNhs11745_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8\ urlLabel FANTOM5 Details:\ ClearCellCarcinomaCellLineJHOC5_CNhs11745_tpm_rev Cl:JHOC-5- bigWig clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_reverse 1 1542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aJHOC-5.CNhs11745.10638-108I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel clear cell carcinoma cell line:JHOC-5_CNhs11745_10638-108I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10638-108I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHOC-5-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ClearCellCarcinomaCellLineJHOC5_CNhs11745_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10638-108I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF244IUS ENCSR038RXU Signal bigWig MCF-7 stably expressing GABPA GABPA ENCSR038RXU signal 2 1542 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/10bc9d7e-9741-4e3b-965f-30529d219e18/ENCFF244IUS.bigWig\ color 65,171,173\ longLabel MCF-7 stably expressing GABPA GABPA ENCSR038RXU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038RXU Signal\ track wgEncodeReg4TfChip_ENCFF244IUS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF023ZYD ENCSR160VHJ Signal bigWig Central memory CD8-positive, alpha-beta T cell male adult 36 years DNase signal 2 1542 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/680d09f7-e2b5-4772-8518-69f91798724f/ENCFF023ZYD.bigWig\ color 6,218,147\ longLabel Central memory CD8-positive, alpha-beta T cell male adult 36 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR160VHJ Signal\ track wgEncodeReg4Epigenetics_ENCFF023ZYD\ type bigWig\ visibility full\ MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_ctss_fwd Cl:JHOM-1+ bigWig mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_forward 0 1543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mucinous%20adenocarcinoma%20cell%20line%3aJHOM-1.CNhs11752.10648-109A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10648-109A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHOM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9\ urlLabel FANTOM5 Details:\ MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_tpm_fwd Cl:JHOM-1+ bigWig mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_forward 1 1543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mucinous%20adenocarcinoma%20cell%20line%3aJHOM-1.CNhs11752.10648-109A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10648-109A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHOM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF478SWS ENCSR038VWU Peak bigBed 5 Mucosa of descending colon tissue male adult (40 years) CTCF peaks 4 1543 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/08c3c427-8c9f-4773-b7ac-0ed4a56502bf/ENCFF478SWS.bigBed\ labelFields none\ longLabel Mucosa of descending colon tissue male adult (40 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038VWU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF478SWS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF101NUL ENCSR161XBV Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 1543 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/6a1ed64c-a4c3-4b06-915c-f385c7d41e9c/ENCFF101NUL.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR161XBV Peak\ track wgEncodeReg4Epigenetics_ENCFF101NUL\ type bigBed 5\ visibility squish\ MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_ctss_rev Cl:JHOM-1- bigWig mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_reverse 0 1544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mucinous%20adenocarcinoma%20cell%20line%3aJHOM-1.CNhs11752.10648-109A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10648-109A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHOM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9\ urlLabel FANTOM5 Details:\ MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_tpm_rev Cl:JHOM-1- bigWig mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_reverse 1 1544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mucinous%20adenocarcinoma%20cell%20line%3aJHOM-1.CNhs11752.10648-109A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mucinous adenocarcinoma cell line:JHOM-1_CNhs11752_10648-109A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10648-109A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHOM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MucinousAdenocarcinomaCellLineJHOM1_CNhs11752_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10648-109A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF890UWL ENCSR038VWU Signal bigWig Mucosa of descending colon tissue male adult (40 years) CTCF ENCSR038VWU signal 2 1544 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/96bab26f-e645-47ca-948a-f5b42f951588/ENCFF890UWL.bigWig\ color 86,86,36\ longLabel Mucosa of descending colon tissue male adult (40 years) CTCF ENCSR038VWU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038VWU Signal\ track wgEncodeReg4TfChip_ENCFF890UWL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF078XQO ENCSR161XBV Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 1544 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/e3425d0f-8b94-4a22-9344-5c57c61ff0cc/ENCFF078XQO.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR161XBV Signal\ track wgEncodeReg4Epigenetics_ENCFF078XQO\ type bigWig\ visibility full\ SerousAdenocarcinomaCellLineJHOS2_CNhs11746_ctss_fwd Cl:JHOS-2+ bigWig serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_forward 0 1545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aJHOS-2.CNhs11746.10639-108I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10639-108I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHOS-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousAdenocarcinomaCellLineJHOS2_CNhs11746_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9\ urlLabel FANTOM5 Details:\ SerousAdenocarcinomaCellLineJHOS2_CNhs11746_tpm_fwd Cl:JHOS-2+ bigWig serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_forward 1 1545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aJHOS-2.CNhs11746.10639-108I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10639-108I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHOS-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousAdenocarcinomaCellLineJHOS2_CNhs11746_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF602QFR ENCSR038XIA Peak bigBed 5 MCF-7 ZNF444 peaks 4 1545 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/60132d08-677c-4143-b255-ba914f6e75d3/ENCFF602QFR.bigBed\ labelFields none\ longLabel MCF-7 ZNF444 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038XIA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF602QFR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF541URG ENCSR161ZGA Peak bigBed 5 Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 1545 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/50206571-7933-4583-b8a6-179ad6e32b2b/ENCFF541URG.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR161ZGA Peak\ track wgEncodeReg4Epigenetics_ENCFF541URG\ type bigBed 5\ visibility squish\ SerousAdenocarcinomaCellLineJHOS2_CNhs11746_ctss_rev Cl:JHOS-2- bigWig serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_reverse 0 1546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aJHOS-2.CNhs11746.10639-108I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10639-108I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHOS-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousAdenocarcinomaCellLineJHOS2_CNhs11746_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9\ urlLabel FANTOM5 Details:\ SerousAdenocarcinomaCellLineJHOS2_CNhs11746_tpm_rev Cl:JHOS-2- bigWig serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_reverse 1 1546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aJHOS-2.CNhs11746.10639-108I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel serous adenocarcinoma cell line:JHOS-2_CNhs11746_10639-108I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10639-108I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHOS-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousAdenocarcinomaCellLineJHOS2_CNhs11746_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10639-108I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF674JOF ENCSR038XIA Signal bigWig MCF-7 ZNF444 ENCSR038XIA signal 2 1546 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/49a01929-aa79-4b52-b81d-89d5072b451d/ENCFF674JOF.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF444 ENCSR038XIA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038XIA Signal\ track wgEncodeReg4TfChip_ENCFF674JOF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF287GSL ENCSR161ZGA Signal bigWig Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 1546 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/c432585f-d4f5-4d2e-b081-b52ea02efa1c/ENCFF287GSL.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR161ZGA Signal\ track wgEncodeReg4Epigenetics_ENCFF287GSL\ type bigWig\ visibility full\ CarcinosarcomaCellLineJHUCS1_CNhs11747_ctss_fwd Cl:JHUCS-1+ bigWig carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_forward 0 1547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinosarcoma%20cell%20line%3aJHUCS-1.CNhs11747.10642-109A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10642-109A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHUCS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinosarcomaCellLineJHUCS1_CNhs11747_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3\ urlLabel FANTOM5 Details:\ CarcinosarcomaCellLineJHUCS1_CNhs11747_tpm_fwd Cl:JHUCS-1+ bigWig carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_forward 1 1547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinosarcoma%20cell%20line%3aJHUCS-1.CNhs11747.10642-109A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10642-109A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHUCS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinosarcomaCellLineJHUCS1_CNhs11747_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF565IOD ENCSR038YKU Peak bigBed 5 Stomach tissue female adult (51 years) POLR2A peaks 4 1547 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/815ebec3-1210-4a2f-a376-1f20fa2b8aed/ENCFF565IOD.bigBed\ labelFields none\ longLabel Stomach tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038YKU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF565IOD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF805JQR ENCSR163ALM Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult H3K4me3 peak 4 1547 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/33278980-e349-4fdd-82ce-6ac3684b0344/ENCFF805JQR.bigBed\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive male adult H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163ALM Peak\ track wgEncodeReg4Epigenetics_ENCFF805JQR\ type bigBed 5\ visibility squish\ CarcinosarcomaCellLineJHUCS1_CNhs11747_ctss_rev Cl:JHUCS-1- bigWig carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_reverse 0 1548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinosarcoma%20cell%20line%3aJHUCS-1.CNhs11747.10642-109A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10642-109A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHUCS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinosarcomaCellLineJHUCS1_CNhs11747_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3\ urlLabel FANTOM5 Details:\ CarcinosarcomaCellLineJHUCS1_CNhs11747_tpm_rev Cl:JHUCS-1- bigWig carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_reverse 1 1548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinosarcoma%20cell%20line%3aJHUCS-1.CNhs11747.10642-109A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel carcinosarcoma cell line:JHUCS-1_CNhs11747_10642-109A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10642-109A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHUCS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinosarcomaCellLineJHUCS1_CNhs11747_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10642-109A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF487ZYQ ENCSR038YKU Signal bigWig Stomach tissue female adult (51 years) POLR2A ENCSR038YKU signal 2 1548 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/4e51ef1c-bc07-429a-8f1f-a51ccc5989c9/ENCFF487ZYQ.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (51 years) POLR2A ENCSR038YKU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR038YKU Signal\ track wgEncodeReg4TfChip_ENCFF487ZYQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF057OQQ ENCSR163ALM Signal bigWig Common myeloid progenitor, CD34-positive male adult H3K4me3 signal 2 1548 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a0ddcde5-c573-459c-b307-387a746d8e4d/ENCFF057OQQ.bigWig\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive male adult H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163ALM Signal\ track wgEncodeReg4Epigenetics_ENCFF057OQQ\ type bigWig\ visibility full\ EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_ctss_fwd Cl:JHUEM-1+ bigWig endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_forward 0 1549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrioid%20adenocarcinoma%20cell%20line%3aJHUEM-1.CNhs11748.10643-109A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10643-109A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHUEM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4\ urlLabel FANTOM5 Details:\ EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_tpm_fwd Cl:JHUEM-1+ bigWig endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_forward 1 1549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrioid%20adenocarcinoma%20cell%20line%3aJHUEM-1.CNhs11748.10643-109A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10643-109A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHUEM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF693TEO ENCSR039CUX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PLSCR1 PLSCR1 peaks 4 1549 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/87fb5730-4020-41a6-8a36-51c7debaba3c/ENCFF693TEO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PLSCR1 PLSCR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR039CUX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF693TEO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF224NEK ENCSR163BSC Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 1549 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/79c534da-bf67-4579-9dba-e5ede1f9942b/ENCFF224NEK.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163BSC Peak\ track wgEncodeReg4Epigenetics_ENCFF224NEK\ type bigBed 5\ visibility squish\ EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_ctss_rev Cl:JHUEM-1- bigWig endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_reverse 0 1550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrioid%20adenocarcinoma%20cell%20line%3aJHUEM-1.CNhs11748.10643-109A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10643-109A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHUEM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4\ urlLabel FANTOM5 Details:\ EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_tpm_rev Cl:JHUEM-1- bigWig endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_reverse 1 1550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrioid%20adenocarcinoma%20cell%20line%3aJHUEM-1.CNhs11748.10643-109A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel endometrioid adenocarcinoma cell line:JHUEM-1_CNhs11748_10643-109A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10643-109A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHUEM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EndometrioidAdenocarcinomaCellLineJHUEM1_CNhs11748_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10643-109A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF390TCK ENCSR039CUX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PLSCR1 PLSCR1 ENCSR039CUX signal 2 1550 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/a31c852e-7c3d-4561-b478-a4a15d198e5f/ENCFF390TCK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PLSCR1 PLSCR1 ENCSR039CUX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR039CUX Signal\ track wgEncodeReg4TfChip_ENCFF390TCK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF754QDS ENCSR163BSC Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 1550 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/1e98e40f-88b9-492b-bb10-c4405096f6c5/ENCFF754QDS.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163BSC Signal\ track wgEncodeReg4Epigenetics_ENCFF754QDS\ type bigWig\ visibility full\ SquamousCellCarcinomaCellLineJHUSnk1_CNhs11749_ctss_fwd Cl:JHUS-nk1+ bigWig squamous cell carcinoma cell line:JHUS-nk1_CNhs11749_10646-109A7_forward 0 1551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10646-109A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aJHUS-nk1.CNhs11749.10646-109A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell carcinoma cell line:JHUS-nk1_CNhs11749_10646-109A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10646-109A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:JHUS-nk1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellCarcinomaCellLineJHUSnk1_CNhs11749_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10646-109A7\ urlLabel FANTOM5 Details:\ SquamousCellCarcinomaCellLineJHUSnk1_CNhs11749_tpm_fwd Cl:JHUS-nk1+ bigWig squamous cell carcinoma cell line:JHUS-nk1_CNhs11749_10646-109A7_forward 1 1551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10646-109A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aJHUS-nk1.CNhs11749.10646-109A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel squamous cell carcinoma cell line:JHUS-nk1_CNhs11749_10646-109A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10646-109A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:JHUS-nk1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellCarcinomaCellLineJHUSnk1_CNhs11749_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10646-109A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF809XVG ENCSR041AXL Peak bigBed 5 K562 RFX1 peaks 4 1551 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/21d96d53-1cf6-477f-90df-fb9bad0b1286/ENCFF809XVG.bigBed\ labelFields none\ longLabel K562 RFX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR041AXL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF809XVG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF156IEC ENCSR163GMC Peak bigBed 5 Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 84 years DNase peak 4 1551 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a006aa15-373c-41f0-aef6-eaa8088f3edd/ENCFF156IEC.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
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https://encode-public.s3.amazonaws.com/2020/11/29/178b7329-1407-4b87-acc2-6a1be7154b53/ENCFF681ZOU.bigWig\ color 254,75,173\ longLabel GM12878 SRF ENCSR041XML signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR041XML Signal\ track wgEncodeReg4TfChip_ENCFF681ZOU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF559HJK ENCSR163KCQ Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 DNase signal 2 1554 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/21/61dd9f08-79eb-4c7c-a8e0-3322b9aea09f/ENCFF559HJK.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163KCQ Signal\ track wgEncodeReg4Epigenetics_ENCFF559HJK\ type bigWig\ visibility full\ AcuteLymphoblasticLeukemiaTALLCellLineJurkat_CNhs11253_ctss_fwd Cl:Jurkat+ bigWig acute lymphoblastic leukemia (T-ALL) cell line:Jurkat_CNhs11253_10464-106H5_forward 0 1555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10464-106H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28T-ALL%29%20cell%20line%3aJurkat.CNhs11253.10464-106H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (T-ALL) cell line:Jurkat_CNhs11253_10464-106H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10464-106H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Jurkat+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaTALLCellLineJurkat_CNhs11253_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10464-106H5\ urlLabel FANTOM5 Details:\ 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ZNF12 ZNF12 peaks 4 1555 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/43d0d4d6-adfa-4d6a-be48-35bfc251c66e/ENCFF867LAR.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 ZNF12 peaks\ mouseOver Signal: $signalValue
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http://fantom.gsc.riken.jp/5/sstar/FF:10464-106H5\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaTALLCellLineJurkat_CNhs11253_tpm_rev Cl:Jurkat- bigWig acute lymphoblastic leukemia (T-ALL) cell line:Jurkat_CNhs11253_10464-106H5_reverse 1 1556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10464-106H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28T-ALL%29%20cell%20line%3aJurkat.CNhs11253.10464-106H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (T-ALL) cell line:Jurkat_CNhs11253_10464-106H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10464-106H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Jurkat-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaTALLCellLineJurkat_CNhs11253_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10464-106H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF254PNS ENCSR041YBR Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 ZNF12 ENCSR041YBR signal 2 1556 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/5f50ba5f-3893-441e-9603-f021291e0991/ENCFF254PNS.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 ZNF12 ENCSR041YBR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR041YBR Signal\ track wgEncodeReg4TfChip_ENCFF254PNS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF536RCF ENCSR163KRG Signal bigWig HG03469 ATAC signal 2 1556 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/1864ffa2-b36e-452a-9880-d0ef9e3fc010/ENCFF536RCF.bigWig\ color 2,199,185\ longLabel HG03469 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163KRG Signal\ track wgEncodeReg4Epigenetics_ENCFF536RCF\ type bigWig\ visibility full\ ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_ctss_fwd Cl:K562+ bigWig chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_forward 0 1557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562.CNhs11250.10454-106G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10454-106G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_tpm_fwd Cl:K562+ bigWig chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_forward 1 1557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562.CNhs11250.10454-106G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10454-106G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF185UOW ENCSR042BQZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9 SMAD9 peaks 4 1557 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/8c229ee8-d2c7-4d3b-b3b0-48719c574da2/ENCFF185UOW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9 SMAD9 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163PKT Peak\ track wgEncodeReg4Epigenetics_ENCFF664JAX\ type bigBed 5\ visibility squish\ ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_ctss_rev Cl:K562- bigWig chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_reverse 0 1558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562.CNhs11250.10454-106G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10454-106G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_tpm_rev Cl:K562- bigWig chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_reverse 1 1558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562.CNhs11250.10454-106G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562_CNhs11250_10454-106G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10454-106G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562_CNhs11250_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10454-106G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF838PHT ENCSR042BQZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9 SMAD9 ENCSR042BQZ signal 2 1558 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/f666a6b8-2d9f-4590-8a45-8aa30ca63858/ENCFF838PHT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9 SMAD9 ENCSR042BQZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR042BQZ Signal\ track wgEncodeReg4TfChip_ENCFF838PHT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF164EEU ENCSR163PKT Signal bigWig Stomach tissue male adult 54 years DNase signal 2 1558 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/3530ad22-05e1-420f-bd84-beed7178cc52/ENCFF164EEU.bigWig\ color 6,218,147\ longLabel Stomach tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163PKT Signal\ track wgEncodeReg4Epigenetics_ENCFF164EEU\ type bigWig\ visibility full\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_ctss_fwd Cl:K562Br1+ bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_forward 0 1559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep1.CNhs12334.10824-111C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10824-111C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_tpm_fwd Cl:K562Br1+ bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_forward 1 1559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep1.CNhs12334.10824-111C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10824-111C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF827PZY ENCSR042GSX Peak bigBed 5 MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens SPDEF SPDEF peaks 4 1559 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/27e95f77-fffd-421a-a9a5-e4aaf20ef75c/ENCFF827PZY.bigBed\ labelFields none\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens SPDEF SPDEF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR042GSX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF827PZY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF005CJI ENCSR163ULN Peak bigBed 5 HFFc6 CTCF peak 4 1559 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/0d56af5b-4e21-4655-998e-8eef50762e13/ENCFF005CJI.bigBed\ color 0,176,240\ labelFields none\ longLabel HFFc6 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163ULN Peak\ track wgEncodeReg4Epigenetics_ENCFF005CJI\ type bigBed 5\ visibility squish\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_ctss_rev Cl:K562Br1- bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_reverse 0 1560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep1.CNhs12334.10824-111C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10824-111C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_tpm_rev Cl:K562Br1- bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_reverse 1 1560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep1.CNhs12334.10824-111C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1_CNhs12334_10824-111C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10824-111C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep1_CNhs12334_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10824-111C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF865AXI ENCSR042GSX Signal bigWig MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens SPDEF SPDEF ENCSR042GSX signal 2 1560 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/52270bc9-d322-4a01-8338-fb3e83f34c17/ENCFF865AXI.bigWig\ color 65,171,173\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens SPDEF SPDEF ENCSR042GSX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR042GSX Signal\ track wgEncodeReg4TfChip_ENCFF865AXI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF406SZM ENCSR163ULN Signal bigWig HFFc6 CTCF signal 2 1560 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/3b5ae14c-91c2-4951-8bed-b4b170db480a/ENCFF406SZM.bigWig\ color 0,176,240\ longLabel HFFc6 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163ULN Signal\ track wgEncodeReg4Epigenetics_ENCFF406SZM\ type bigWig\ visibility full\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_ctss_fwd Cl:K562Br2+ bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_forward 0 1561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep2.CNhs12335.10825-111C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10825-111C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_tpm_fwd Cl:K562Br2+ bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_forward 1 1561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep2.CNhs12335.10825-111C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10825-111C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF261BIX ENCSR042TWZ Peak bigBed 5 MCF-7 SNIP1 peaks 4 1561 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/57538e76-bfe4-43e1-b291-24c51db05526/ENCFF261BIX.bigBed\ labelFields none\ longLabel MCF-7 SNIP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR042TWZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF261BIX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF561WZX ENCSR163VQD Peak bigBed 5 K562 treated with 1 μM Crizotinib for 24 hours ATAC peak 4 1561 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/f78724e4-3cb4-43f9-80ad-74fb28890bd7/ENCFF561WZX.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163VQD Peak\ track wgEncodeReg4Epigenetics_ENCFF561WZX\ type bigBed 5\ visibility squish\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_ctss_rev Cl:K562Br2- bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_reverse 0 1562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep2.CNhs12335.10825-111C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10825-111C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_tpm_rev Cl:K562Br2- bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_reverse 1 1562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep2.CNhs12335.10825-111C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep2_CNhs12335_10825-111C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10825-111C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep2_CNhs12335_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10825-111C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF869IZB ENCSR042TWZ Signal bigWig MCF-7 SNIP1 ENCSR042TWZ signal 2 1562 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/91eafe1b-71e2-4ea9-b456-a1e7e88bff24/ENCFF869IZB.bigWig\ color 65,171,173\ longLabel MCF-7 SNIP1 ENCSR042TWZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR042TWZ Signal\ track wgEncodeReg4TfChip_ENCFF869IZB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF148HQB ENCSR163VQD Signal bigWig K562 treated with 1 μM Crizotinib for 24 hours ATAC signal 2 1562 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/7cde61a8-6703-4c00-921d-dd430a268b1c/ENCFF148HQB.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR163VQD Signal\ track wgEncodeReg4Epigenetics_ENCFF148HQB\ type bigWig\ visibility full\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_ctss_fwd Cl:K562Br3+ bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_forward 0 1563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep3.CNhs12336.10826-111C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10826-111C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_tpm_fwd Cl:K562Br3+ bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_forward 1 1563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep3.CNhs12336.10826-111C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10826-111C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF120AXZ ENCSR044IXA Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354B ZNF354B peaks 4 1563 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/0b72c90b-04a4-4c33-ab73-2abd2a14537d/ENCFF120AXZ.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354B ZNF354B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR044IXA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF120AXZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF980EWE ENCSR164PQJ Peak bigBed 5 Thymus tissue male embryo 127 days DNase peak 4 1563 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/1f36c5dc-1b9a-4523-8ddf-8728b0e4d12a/ENCFF980EWE.bigBed\ color 6,218,147\ labelFields none\ longLabel Thymus tissue male embryo 127 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR164PQJ Peak\ track wgEncodeReg4Epigenetics_ENCFF980EWE\ type bigBed 5\ visibility squish\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_ctss_rev Cl:K562Br3- bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_reverse 0 1564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep3.CNhs12336.10826-111C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10826-111C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:K562Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_tpm_rev Cl:K562Br3- bigWig chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_reverse 1 1564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aK562%20ENCODE%2c%20biol_rep3.CNhs12336.10826-111C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3_CNhs12336_10826-111C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10826-111C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:K562Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineK562ENCODEBiolRep3_CNhs12336_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10826-111C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF575LZV ENCSR044IXA Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354B ZNF354B ENCSR044IXA signal 2 1564 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/4d109983-15fb-486a-a638-30f6e71e60b1/ENCFF575LZV.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354B ZNF354B ENCSR044IXA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR044IXA Signal\ track wgEncodeReg4TfChip_ENCFF575LZV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF563TJP ENCSR164PQJ Signal bigWig Thymus tissue male embryo 127 days DNase signal 2 1564 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/72a0b12f-01b7-47ee-9756-47e42dac944c/ENCFF563TJP.bigWig\ color 6,218,147\ longLabel Thymus tissue male embryo 127 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR164PQJ Signal\ track wgEncodeReg4Epigenetics_ENCFF563TJP\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_ctss_fwd Cl:Kasumi-1+ bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_forward 0 1565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-1.CNhs13502.10788-110H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10788-110H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Kasumi-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_tpm_fwd Cl:Kasumi-1+ bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_forward 1 1565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-1.CNhs13502.10788-110H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10788-110H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF833WDR ENCSR044RZF Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3 NR2E3 peaks 4 1565 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/2d2c8934-3b72-4843-a776-7226ed6d2c64/ENCFF833WDR.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3 NR2E3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR044RZF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF833WDR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF136UOV ENCSR164TBP Peak bigBed 5 Right lobe of liver tissue female adult 47 years DNase peak 4 1565 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/af6113a5-1444-41c7-bc1e-be4ceff1c590/ENCFF136UOV.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lobe of liver tissue female adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR164TBP Peak\ track wgEncodeReg4Epigenetics_ENCFF136UOV\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_ctss_rev Cl:Kasumi-1- bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_reverse 0 1566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-1.CNhs13502.10788-110H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10788-110H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Kasumi-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_tpm_rev Cl:Kasumi-1- bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_reverse 1 1566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-1.CNhs13502.10788-110H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-1_CNhs13502_10788-110H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10788-110H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi1_CNhs13502_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10788-110H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF453MJK ENCSR044RZF Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3 NR2E3 ENCSR044RZF signal 2 1566 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/07308df6-1535-4f35-a2dd-f37ca0f5208f/ENCFF453MJK.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3 NR2E3 ENCSR044RZF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR044RZF Signal\ track wgEncodeReg4TfChip_ENCFF453MJK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF634BMR ENCSR164TBP Signal bigWig Right lobe of liver tissue female adult 47 years DNase signal 2 1566 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/45b59d94-5ee3-44c7-a366-bd990abad272/ENCFF634BMR.bigWig\ color 6,218,147\ longLabel Right lobe of liver tissue female adult 47 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR164TBP Signal\ track wgEncodeReg4Epigenetics_ENCFF634BMR\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_ctss_fwd Cl:Kasumi-6+ bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_forward 0 1567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-6.CNhs13052.10792-110H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10792-110H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Kasumi-6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_tpm_fwd Cl:Kasumi-6+ bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_forward 1 1567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-6.CNhs13052.10792-110H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10792-110H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF613YON ENCSR045YHA Peak bigBed 5 GM23338 originated from GM23248 EZH2 peaks 4 1567 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/13/4f0d490a-d62c-442f-b581-5725cb3188fd/ENCFF613YON.bigBed\ labelFields none\ longLabel GM23338 originated from GM23248 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR045YHA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF613YON\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF379AUI ENCSR165CDY Peak bigBed 5 Left ventricle myocardium inferior tissue male adult 60 years H3K27ac peak 4 1567 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/d59b6c16-aca4-4529-b629-617a4951eb79/ENCFF379AUI.bigBed\ color 181,145,0\ longLabel Left ventricle myocardium inferior tissue male adult 60 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR165CDY Peak\ track wgEncodeReg4Epigenetics_ENCFF379AUI\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_ctss_rev Cl:Kasumi-6- bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_reverse 0 1568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-6.CNhs13052.10792-110H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10792-110H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Kasumi-6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_tpm_rev Cl:Kasumi-6- bigWig acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_reverse 1 1568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aKasumi-6.CNhs13052.10792-110H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M2) cell line:Kasumi-6_CNhs13052_10792-110H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10792-110H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Kasumi-6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM2CellLineKasumi6_CNhs13052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10792-110H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF477ICC ENCSR045YHA Signal bigWig GM23338 originated from GM23248 EZH2 ENCSR045YHA signal 2 1568 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/07/13/431c466e-54a4-4dee-8f9d-605b86c7c225/ENCFF477ICC.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 EZH2 ENCSR045YHA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR045YHA Signal\ track wgEncodeReg4TfChip_ENCFF477ICC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF960KLD ENCSR165CDY Signal bigWig Left ventricle myocardium inferior tissue male adult 60 years H3K27ac signal 2 1568 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/1df94b02-a6e0-421f-8577-0cdab479f1cb/ENCFF960KLD.bigWig\ color 181,145,0\ longLabel Left ventricle myocardium inferior tissue male adult 60 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR165CDY Signal\ track wgEncodeReg4Epigenetics_ENCFF960KLD\ type bigWig\ visibility full\ SignetRingCarcinomaCellLineKatoIII_CNhs10753_ctss_fwd Cl:KatoIII+ bigWig signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_forward 0 1569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aKato%20III.CNhs10753.10436-106E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10436-106E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KatoIII+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SignetRingCarcinomaCellLineKatoIII_CNhs10753_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4\ urlLabel FANTOM5 Details:\ SignetRingCarcinomaCellLineKatoIII_CNhs10753_tpm_fwd Cl:KatoIII+ bigWig signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_forward 1 1569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aKato%20III.CNhs10753.10436-106E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10436-106E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KatoIII+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SignetRingCarcinomaCellLineKatoIII_CNhs10753_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF955VER ENCSR047BUZ Peak bigBed 5 HepG2 ATF2 peaks 4 1569 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/c9e43c99-0616-444d-8fea-94f62252bdd5/ENCFF955VER.bigBed\ labelFields none\ longLabel HepG2 ATF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR047BUZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF955VER\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF378YLB ENCSR165JXS Peak bigBed 5 K562 treated with 5 μM JQ1 for 4 hours ATAC peak 4 1569 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/25f7e28d-9e56-4a05-a145-8f06314e48a9/ENCFF378YLB.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM JQ1 for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR165JXS Peak\ track wgEncodeReg4Epigenetics_ENCFF378YLB\ type bigBed 5\ visibility squish\ SignetRingCarcinomaCellLineKatoIII_CNhs10753_ctss_rev Cl:KatoIII- bigWig signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_reverse 0 1570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aKato%20III.CNhs10753.10436-106E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10436-106E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KatoIII-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SignetRingCarcinomaCellLineKatoIII_CNhs10753_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4\ urlLabel FANTOM5 Details:\ SignetRingCarcinomaCellLineKatoIII_CNhs10753_tpm_rev Cl:KatoIII- bigWig signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_reverse 1 1570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aKato%20III.CNhs10753.10436-106E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel signet ring carcinoma cell line:Kato III_CNhs10753_10436-106E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10436-106E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KatoIII-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SignetRingCarcinomaCellLineKatoIII_CNhs10753_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10436-106E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF038AZR ENCSR047BUZ Signal bigWig HepG2 ATF2 ENCSR047BUZ signal 2 1570 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/aa9011bb-5013-40c2-b630-d1fd67bd834b/ENCFF038AZR.bigWig\ color 137,152,82\ longLabel HepG2 ATF2 ENCSR047BUZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR047BUZ Signal\ track wgEncodeReg4TfChip_ENCFF038AZR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF543VXW ENCSR165JXS Signal bigWig K562 treated with 5 μM JQ1 for 4 hours ATAC signal 2 1570 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/e75d882a-248a-481d-8aae-717751c4dcf5/ENCFF543VXW.bigWig\ color 2,199,185\ longLabel K562 treated with 5 μM JQ1 for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR165JXS Signal\ track wgEncodeReg4Epigenetics_ENCFF543VXW\ type bigWig\ visibility full\ ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_ctss_fwd Cl:KCL-22+ bigWig chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_forward 0 1571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myeloblastic%20leukemia%20%28CML%29%20cell%20line%3aKCL-22.CNhs11886.10801-110I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10801-110I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KCL-22+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9\ urlLabel FANTOM5 Details:\ ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_tpm_fwd Cl:KCL-22+ bigWig chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_forward 1 1571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myeloblastic%20leukemia%20%28CML%29%20cell%20line%3aKCL-22.CNhs11886.10801-110I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10801-110I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KCL-22+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF191QZG ENCSR048CVK Peak bigBed 5 A549 JUN peaks 4 1571 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/ef3ad1e8-ef7c-491b-bdb4-18c52bde83ec/ENCFF191QZG.bigBed\ labelFields none\ longLabel A549 JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR048CVK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF191QZG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF695WYA ENCSR166KPV Peak bigBed 5 Endodermal cell DNase peak 4 1571 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0e802120-233c-4338-bd84-31a21c0f7beb/ENCFF695WYA.bigBed\ color 6,218,147\ labelFields none\ longLabel Endodermal cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR166KPV Peak\ track wgEncodeReg4Epigenetics_ENCFF695WYA\ type bigBed 5\ visibility squish\ ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_ctss_rev Cl:KCL-22- bigWig chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_reverse 0 1572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myeloblastic%20leukemia%20%28CML%29%20cell%20line%3aKCL-22.CNhs11886.10801-110I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10801-110I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KCL-22-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9\ urlLabel FANTOM5 Details:\ ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_tpm_rev Cl:KCL-22- bigWig chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_reverse 1 1572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myeloblastic%20leukemia%20%28CML%29%20cell%20line%3aKCL-22.CNhs11886.10801-110I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myeloblastic leukemia (CML) cell line:KCL-22_CNhs11886_10801-110I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10801-110I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KCL-22-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyeloblasticLeukemiaCMLCellLineKCL22_CNhs11886_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10801-110I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF815NVB ENCSR048CVK Signal bigWig A549 JUN ENCSR048CVK signal 2 1572 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/301c2a97-7aad-4f66-abde-7fba944ea607/ENCFF815NVB.bigWig\ color 130,163,45\ longLabel A549 JUN ENCSR048CVK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR048CVK Signal\ track wgEncodeReg4TfChip_ENCFF815NVB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF909KVS ENCSR166KPV Signal bigWig Endodermal cell DNase signal 2 1572 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0a10ea15-28c9-4c08-b92d-bd5ea871c117/ENCFF909KVS.bigWig\ color 6,218,147\ longLabel Endodermal cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR166KPV Signal\ track wgEncodeReg4Epigenetics_ENCFF909KVS\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_ctss_fwd Cl:KG-1+ bigWig acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward 0 1573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKG-1.CNhs13053.10827-111C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10827-111C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KG-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_tpm_fwd Cl:KG-1+ bigWig acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward 1 1573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKG-1.CNhs13053.10827-111C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10827-111C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KG-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF673TZW ENCSR048WVW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF367 ZNF367 peaks 4 1573 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/1e7b2622-54ae-41b9-ab13-284735701fbe/ENCFF673TZW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF367 ZNF367 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR048WVW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF673TZW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF906AYS ENCSR166TEE Peak bigBed 5 Forelimb muscle tissue female embryo 108 days DNase peak 4 1573 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4c08d1b9-b0bb-4419-ac5d-21c517d5d223/ENCFF906AYS.bigBed\ color 6,218,147\ labelFields none\ longLabel Forelimb muscle tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR166TEE Peak\ track wgEncodeReg4Epigenetics_ENCFF906AYS\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_ctss_rev Cl:KG-1- bigWig acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_reverse 0 1574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKG-1.CNhs13053.10827-111C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10827-111C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KG-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_tpm_rev Cl:KG-1- bigWig acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_reverse 1 1574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M0%29%20cell%20line%3aKG-1.CNhs13053.10827-111C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M0) cell line:KG-1_CNhs13053_10827-111C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10827-111C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KG-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM0CellLineKG1_CNhs13053_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10827-111C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF895DUK ENCSR048WVW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF367 ZNF367 ENCSR048WVW signal 2 1574 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/9d749227-e3d3-433b-b566-b07713edc6a6/ENCFF895DUK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF367 ZNF367 ENCSR048WVW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR048WVW Signal\ track wgEncodeReg4TfChip_ENCFF895DUK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF400XKV ENCSR166TEE Signal bigWig Forelimb muscle tissue female embryo 108 days DNase signal 2 1574 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/5ce0bcf2-6940-4e73-8136-852b7d25523d/ENCFF400XKV.bigWig\ color 6,218,147\ longLabel Forelimb muscle tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR166TEE Signal\ track wgEncodeReg4Epigenetics_ENCFF400XKV\ type bigWig\ visibility full\ GranulosaCellTumorCellLineKGN_CNhs11740_ctss_fwd Cl:KGN+ bigWig granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_forward 0 1575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulosa%20cell%20tumor%20cell%20line%3aKGN.CNhs11740.10624-108H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10624-108H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KGN+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GranulosaCellTumorCellLineKGN_CNhs11740_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3\ urlLabel FANTOM5 Details:\ GranulosaCellTumorCellLineKGN_CNhs11740_tpm_fwd Cl:KGN+ bigWig granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_forward 1 1575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulosa%20cell%20tumor%20cell%20line%3aKGN.CNhs11740.10624-108H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10624-108H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KGN+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GranulosaCellTumorCellLineKGN_CNhs11740_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF246MVE ENCSR050KWL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN22 ZSCAN22 peaks 4 1575 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/a1e08cca-1622-4bff-8f97-e97582fad3cd/ENCFF246MVE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN22 ZSCAN22 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR050KWL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF246MVE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF432YYK ENCSR166ZZZ Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 28 years H3K4me3 peak 4 1575 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/239296ed-da19-423a-a439-7bccc8a4f573/ENCFF432YYK.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 28 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR166ZZZ Peak\ track wgEncodeReg4Epigenetics_ENCFF432YYK\ type bigBed 5\ visibility squish\ GranulosaCellTumorCellLineKGN_CNhs11740_ctss_rev Cl:KGN- bigWig granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_reverse 0 1576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulosa%20cell%20tumor%20cell%20line%3aKGN.CNhs11740.10624-108H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10624-108H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KGN-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GranulosaCellTumorCellLineKGN_CNhs11740_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3\ urlLabel FANTOM5 Details:\ GranulosaCellTumorCellLineKGN_CNhs11740_tpm_rev Cl:KGN- bigWig granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_reverse 1 1576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulosa%20cell%20tumor%20cell%20line%3aKGN.CNhs11740.10624-108H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel granulosa cell tumor cell line:KGN_CNhs11740_10624-108H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10624-108H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KGN-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GranulosaCellTumorCellLineKGN_CNhs11740_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10624-108H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF487XYQ ENCSR050KWL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN22 ZSCAN22 ENCSR050KWL signal 2 1576 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/cd67e06a-3064-48ab-991d-3d8001539324/ENCFF487XYQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN22 ZSCAN22 ENCSR050KWL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR050KWL Signal\ track wgEncodeReg4TfChip_ENCFF487XYQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF690UGP ENCSR166ZZZ Signal bigWig CD8-positive, alpha-beta T cell male adult 28 years H3K4me3 signal 2 1576 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/0674a5ca-a7fa-455e-b62c-eafe7ca952bf/ENCFF690UGP.bigWig\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 28 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR166ZZZ Signal\ track wgEncodeReg4Epigenetics_ENCFF690UGP\ type bigWig\ visibility full\ ThyroidCarcinomaCellLineKHM5M_CNhs14140_ctss_fwd Cl:KHM-5M+ bigWig thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward 0 1577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aKHM-5M.CNhs14140.10776-110G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10776-110G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KHM-5M+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThyroidCarcinomaCellLineKHM5M_CNhs14140_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2\ urlLabel FANTOM5 Details:\ ThyroidCarcinomaCellLineKHM5M_CNhs14140_tpm_fwd Cl:KHM-5M+ bigWig thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward 1 1577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aKHM-5M.CNhs14140.10776-110G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10776-110G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KHM-5M+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThyroidCarcinomaCellLineKHM5M_CNhs14140_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF401LGY ENCSR051DXE Peak bigBed 5 K562 FUS peaks 4 1577 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e295da04-82e8-4bde-81ad-3324125614f1/ENCFF401LGY.bigBed\ labelFields none\ longLabel K562 FUS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR051DXE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF401LGY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF877NRR ENCSR167JFX Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 37 years DNase peak 4 1577 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/66808ff9-379d-4e82-a886-3023437c9a42/ENCFF877NRR.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR167JFX Peak\ track wgEncodeReg4Epigenetics_ENCFF877NRR\ type bigBed 5\ visibility squish\ ThyroidCarcinomaCellLineKHM5M_CNhs14140_ctss_rev Cl:KHM-5M- bigWig thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_reverse 0 1578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aKHM-5M.CNhs14140.10776-110G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10776-110G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KHM-5M-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ThyroidCarcinomaCellLineKHM5M_CNhs14140_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2\ urlLabel FANTOM5 Details:\ ThyroidCarcinomaCellLineKHM5M_CNhs14140_tpm_rev Cl:KHM-5M- bigWig thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_reverse 1 1578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aKHM-5M.CNhs14140.10776-110G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thyroid carcinoma cell line:KHM-5M_CNhs14140_10776-110G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10776-110G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KHM-5M-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ThyroidCarcinomaCellLineKHM5M_CNhs14140_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10776-110G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF414GZH ENCSR051DXE Signal bigWig K562 FUS ENCSR051DXE signal 2 1578 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6f3f20e3-2e53-4545-ac24-d11cc9a02788/ENCFF414GZH.bigWig\ color 254,75,173\ longLabel K562 FUS ENCSR051DXE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR051DXE Signal\ track wgEncodeReg4TfChip_ENCFF414GZH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF980OLF ENCSR167JFX Signal bigWig CD4-positive, alpha-beta T cell male adult 37 years DNase signal 2 1578 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/beb99ab4-9657-4832-9c9c-f7d3a163ed7c/ENCFF980OLF.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR167JFX Signal\ track wgEncodeReg4Epigenetics_ENCFF980OLF\ type bigWig\ visibility full\ NKTCellLeukemiaCellLineKHYG1_CNhs11867_ctss_fwd Cl:KHYG-1+ bigWig NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_forward 0 1579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/NK%20T%20cell%20leukemia%20cell%20line%3aKHYG-1.CNhs11867.10777-110G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10777-110G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KHYG-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NKTCellLeukemiaCellLineKHYG1_CNhs11867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3\ urlLabel FANTOM5 Details:\ NKTCellLeukemiaCellLineKHYG1_CNhs11867_tpm_fwd Cl:KHYG-1+ bigWig NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_forward 1 1579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/NK%20T%20cell%20leukemia%20cell%20line%3aKHYG-1.CNhs11867.10777-110G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10777-110G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KHYG-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NKTCellLeukemiaCellLineKHYG1_CNhs11867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF078EKB ENCSR051OUX Peak bigBed 5 K562 NFATC3 peaks 4 1579 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/8d283bd2-6048-42d3-9380-74aed548c86b/ENCFF078EKB.bigBed\ labelFields none\ longLabel K562 NFATC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR051OUX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF078EKB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF722EJH ENCSR167VIP Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase peak 4 1579 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/9acc3b47-d691-4e7f-bf86-6b2b2ad75b5b/ENCFF722EJH.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR167VIP Peak\ track wgEncodeReg4Epigenetics_ENCFF722EJH\ type bigBed 5\ visibility squish\ NKTCellLeukemiaCellLineKHYG1_CNhs11867_ctss_rev Cl:KHYG-1- bigWig NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_reverse 0 1580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/NK%20T%20cell%20leukemia%20cell%20line%3aKHYG-1.CNhs11867.10777-110G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10777-110G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KHYG-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NKTCellLeukemiaCellLineKHYG1_CNhs11867_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3\ urlLabel FANTOM5 Details:\ NKTCellLeukemiaCellLineKHYG1_CNhs11867_tpm_rev Cl:KHYG-1- bigWig NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_reverse 1 1580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/NK%20T%20cell%20leukemia%20cell%20line%3aKHYG-1.CNhs11867.10777-110G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel NK T cell leukemia cell line:KHYG-1_CNhs11867_10777-110G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10777-110G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KHYG-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NKTCellLeukemiaCellLineKHYG1_CNhs11867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10777-110G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF845HRN ENCSR051OUX Signal bigWig K562 NFATC3 ENCSR051OUX signal 2 1580 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/04e9a310-f2c7-4fa7-8d7b-29ecf6d59d1c/ENCFF845HRN.bigWig\ color 254,75,173\ longLabel K562 NFATC3 ENCSR051OUX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR051OUX Signal\ track wgEncodeReg4TfChip_ENCFF845HRN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF211IRR ENCSR167VIP Signal bigWig Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase signal 2 1580 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/d9bf13bc-49fc-42bc-8a56-7196e467b1ea/ENCFF211IRR.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR167VIP Signal\ track wgEncodeReg4Epigenetics_ENCFF211IRR\ type bigWig\ visibility full\ AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_ctss_fwd Cl:Ki-JK+ bigWig anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_forward 0 1581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20large%20cell%20lymphoma%20cell%20line%3aKi-JK.CNhs11881.10795-110I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10795-110I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ki-JK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3\ urlLabel FANTOM5 Details:\ AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_tpm_fwd Cl:Ki-JK+ bigWig anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_forward 1 1581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20large%20cell%20lymphoma%20cell%20line%3aKi-JK.CNhs11881.10795-110I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10795-110I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ki-JK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF921KSE ENCSR052FXA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B ZNF33B peaks 4 1581 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/158ae05f-5fe5-4895-909d-179428f0d765/ENCFF921KSE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B ZNF33B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR052FXA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF921KSE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF478DIO ENCSR167XSQ Peak bigBed 5 Muscle of leg tissue male embryo 101 days DNase peak 4 1581 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/1822e471-bcc4-4e97-95ae-1171ae2e0a64/ENCFF478DIO.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue male embryo 101 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR167XSQ Peak\ track wgEncodeReg4Epigenetics_ENCFF478DIO\ type bigBed 5\ visibility squish\ AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_ctss_rev Cl:Ki-JK- bigWig anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_reverse 0 1582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20large%20cell%20lymphoma%20cell%20line%3aKi-JK.CNhs11881.10795-110I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10795-110I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ki-JK-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3\ urlLabel FANTOM5 Details:\ AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_tpm_rev Cl:Ki-JK- bigWig anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_reverse 1 1582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20large%20cell%20lymphoma%20cell%20line%3aKi-JK.CNhs11881.10795-110I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel anaplastic large cell lymphoma cell line:Ki-JK_CNhs11881_10795-110I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10795-110I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ki-JK-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticLargeCellLymphomaCellLineKiJK_CNhs11881_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10795-110I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF205IFB ENCSR052FXA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B ZNF33B ENCSR052FXA signal 2 1582 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/bce0bbd0-6699-40df-8baf-c0a48da476ce/ENCFF205IFB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33B ZNF33B ENCSR052FXA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR052FXA Signal\ track wgEncodeReg4TfChip_ENCFF205IFB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF191QGK ENCSR167XSQ Signal bigWig Muscle of leg tissue male embryo 101 days DNase signal 2 1582 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/514781c7-ca2a-4aa9-a9e2-29a8283140bb/ENCFF191QGK.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue male embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR167XSQ Signal\ track wgEncodeReg4Epigenetics_ENCFF191QGK\ type bigWig\ visibility full\ DuctalCellCarcinomaCellLineKLM1_CNhs11100_ctss_fwd Cl:KLM-1+ bigWig ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_forward 0 1583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aKLM-1.CNhs11100.10438-106E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10438-106E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KLM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DuctalCellCarcinomaCellLineKLM1_CNhs11100_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6\ urlLabel FANTOM5 Details:\ DuctalCellCarcinomaCellLineKLM1_CNhs11100_tpm_fwd Cl:KLM-1+ bigWig ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_forward 1 1583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aKLM-1.CNhs11100.10438-106E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10438-106E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KLM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DuctalCellCarcinomaCellLineKLM1_CNhs11100_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF382QWQ ENCSR052PTN Peak bigBed 5 K562 PCBP1 peaks 4 1583 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/1f8ffef7-31fa-4a5a-8512-01944ce8f69e/ENCFF382QWQ.bigBed\ labelFields none\ longLabel K562 PCBP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR052PTN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF382QWQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF377YBQ ENCSR168KQC Peak bigBed 5 Middle frontal area 46 tissue female adult 84 years CTCF peak 4 1583 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/e1b72a66-6a98-4db0-b7e1-80c43c539577/ENCFF377YBQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 84 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR168KQC Peak\ track wgEncodeReg4Epigenetics_ENCFF377YBQ\ type bigBed 5\ visibility squish\ DuctalCellCarcinomaCellLineKLM1_CNhs11100_ctss_rev Cl:KLM-1- bigWig ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_reverse 0 1584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aKLM-1.CNhs11100.10438-106E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10438-106E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KLM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DuctalCellCarcinomaCellLineKLM1_CNhs11100_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6\ urlLabel FANTOM5 Details:\ DuctalCellCarcinomaCellLineKLM1_CNhs11100_tpm_rev Cl:KLM-1- bigWig ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_reverse 1 1584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aKLM-1.CNhs11100.10438-106E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ductal cell carcinoma cell line:KLM-1_CNhs11100_10438-106E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10438-106E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KLM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DuctalCellCarcinomaCellLineKLM1_CNhs11100_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10438-106E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF608BOH ENCSR052PTN Signal bigWig K562 PCBP1 ENCSR052PTN signal 2 1584 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/63a3f95b-3531-4a41-adfd-df0db16656b0/ENCFF608BOH.bigWig\ color 254,75,173\ longLabel K562 PCBP1 ENCSR052PTN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR052PTN Signal\ track wgEncodeReg4TfChip_ENCFF608BOH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF741DPN ENCSR168KQC Signal bigWig Middle frontal area 46 tissue female adult 84 years CTCF signal 2 1584 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/789de22d-c65e-4f1e-b703-2a943ce50f8a/ENCFF741DPN.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 84 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR168KQC Signal\ track wgEncodeReg4Epigenetics_ENCFF741DPN\ type bigWig\ visibility full\ LiposarcomaCellLineKMLS1_CNhs11870_ctss_fwd Cl:KMLS-1+ bigWig liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_forward 0 1585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aKMLS-1.CNhs11870.10782-110G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10782-110G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KMLS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LiposarcomaCellLineKMLS1_CNhs11870_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8\ urlLabel FANTOM5 Details:\ LiposarcomaCellLineKMLS1_CNhs11870_tpm_fwd Cl:KMLS-1+ bigWig liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_forward 1 1585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aKMLS-1.CNhs11870.10782-110G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10782-110G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KMLS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LiposarcomaCellLineKMLS1_CNhs11870_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF360ZSW ENCSR054FKH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 peaks 4 1585 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3a44d6c3-b984-473e-8b75-855e7fddf76c/ENCFF360ZSW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR054FKH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF360ZSW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF912EFL ENCSR168PQI Peak bigBed 5 Stomach smooth muscle tissue male adult 59 years H3K4me3 peak 4 1585 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/44c193ca-205c-4815-9d69-0c9564f435d8/ENCFF912EFL.bigBed\ color 255,0,0\ longLabel Stomach smooth muscle tissue male adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR168PQI Peak\ track wgEncodeReg4Epigenetics_ENCFF912EFL\ type bigBed 5\ visibility squish\ LiposarcomaCellLineKMLS1_CNhs11870_ctss_rev Cl:KMLS-1- bigWig liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_reverse 0 1586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aKMLS-1.CNhs11870.10782-110G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10782-110G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KMLS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LiposarcomaCellLineKMLS1_CNhs11870_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8\ urlLabel FANTOM5 Details:\ LiposarcomaCellLineKMLS1_CNhs11870_tpm_rev Cl:KMLS-1- bigWig liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_reverse 1 1586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aKMLS-1.CNhs11870.10782-110G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel liposarcoma cell line:KMLS-1_CNhs11870_10782-110G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10782-110G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KMLS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LiposarcomaCellLineKMLS1_CNhs11870_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10782-110G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF081RHO ENCSR054FKH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 ENCSR054FKH signal 2 1586 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/32c6990d-38da-409a-adcb-91f46bc6ee72/ENCFF081RHO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 ENCSR054FKH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR054FKH Signal\ track wgEncodeReg4TfChip_ENCFF081RHO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF112MIS ENCSR168PQI Signal bigWig Stomach smooth muscle tissue male adult 59 years H3K4me3 signal 2 1586 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3d5868a9-25f0-41eb-baf2-b3bcb9f779c4/ENCFF112MIS.bigWig\ color 255,0,0\ longLabel Stomach smooth muscle tissue male adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR168PQI Signal\ track wgEncodeReg4Epigenetics_ENCFF112MIS\ type bigWig\ visibility full\ BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_ctss_fwd Cl:KNS-62+ bigWig bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_forward 0 1587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchial%20squamous%20cell%20carcinoma%20cell%20line%3aKNS-62.CNhs11862.10760-110E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10760-110E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KNS-62+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4\ urlLabel FANTOM5 Details:\ BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_tpm_fwd Cl:KNS-62+ bigWig bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_forward 1 1587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchial%20squamous%20cell%20carcinoma%20cell%20line%3aKNS-62.CNhs11862.10760-110E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10760-110E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KNS-62+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF685YZN ENCSR054JMQ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens REST REST peaks 4 1587 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/7dc9c2f1-a10d-4b48-adef-dafc1d0bc8c0/ENCFF685YZN.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens REST REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR054JMQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF685YZN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF421XSZ ENCSR168WMQ Peak bigBed 5 Activated CD8-positive, naive alpha-beta T cell H3K27ac peak 4 1587 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/d9da4c04-57db-4cb8-b771-c7b7d8398bc6/ENCFF421XSZ.bigBed\ color 181,145,0\ longLabel Activated CD8-positive, naive alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR168WMQ Peak\ track wgEncodeReg4Epigenetics_ENCFF421XSZ\ type bigBed 5\ visibility squish\ BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_ctss_rev Cl:KNS-62- bigWig bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_reverse 0 1588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchial%20squamous%20cell%20carcinoma%20cell%20line%3aKNS-62.CNhs11862.10760-110E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10760-110E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KNS-62-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4\ urlLabel FANTOM5 Details:\ BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_tpm_rev Cl:KNS-62- bigWig bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_reverse 1 1588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchial%20squamous%20cell%20carcinoma%20cell%20line%3aKNS-62.CNhs11862.10760-110E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bronchial squamous cell carcinoma cell line:KNS-62_CNhs11862_10760-110E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10760-110E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KNS-62-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchialSquamousCellCarcinomaCellLineKNS62_CNhs11862_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10760-110E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF833DFR ENCSR054JMQ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens REST REST ENCSR054JMQ signal 2 1588 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/106f21ca-4be3-4d2e-8618-cb9ef94f70fa/ENCFF833DFR.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens REST REST ENCSR054JMQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR054JMQ Signal\ track wgEncodeReg4TfChip_ENCFF833DFR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF594SKK ENCSR168WMQ Signal bigWig Activated CD8-positive, naive alpha-beta T cell H3K27ac signal 2 1588 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/3bbb5ca7-4a70-4162-8d5b-4026f7a1a66b/ENCFF594SKK.bigWig\ color 181,145,0\ longLabel Activated CD8-positive, naive alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR168WMQ Signal\ track wgEncodeReg4Epigenetics_ENCFF594SKK\ type bigWig\ visibility full\ PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_ctss_fwd Cl:KU-SN+ bigWig peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_forward 0 1589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/peripheral%20neuroectodermal%20tumor%20cell%20line%3aKU-SN.CNhs11830.10697-109G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10697-109G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KU-SN+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4\ urlLabel FANTOM5 Details:\ PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_tpm_fwd Cl:KU-SN+ bigWig peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_forward 1 1589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/peripheral%20neuroectodermal%20tumor%20cell%20line%3aKU-SN.CNhs11830.10697-109G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10697-109G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KU-SN+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF455XGO ENCSR055FQB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217 ZNF217 peaks 4 1589 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/54b74bff-6b4e-4861-b3cc-b1a628afee74/ENCFF455XGO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217 ZNF217 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR055FQB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF455XGO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF680PVX ENCSR169CRN Peak bigBed 5 Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 1589 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ed67621a-e719-4771-ab9d-a9f2404c8f96/ENCFF680PVX.bigBed\ color 255,0,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR169CRN Peak\ track wgEncodeReg4Epigenetics_ENCFF680PVX\ type bigBed 5\ visibility squish\ PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_ctss_rev Cl:KU-SN- bigWig peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_reverse 0 1590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/peripheral%20neuroectodermal%20tumor%20cell%20line%3aKU-SN.CNhs11830.10697-109G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10697-109G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KU-SN-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4\ urlLabel FANTOM5 Details:\ PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_tpm_rev Cl:KU-SN- bigWig peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_reverse 1 1590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/peripheral%20neuroectodermal%20tumor%20cell%20line%3aKU-SN.CNhs11830.10697-109G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel peripheral neuroectodermal tumor cell line:KU-SN_CNhs11830_10697-109G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10697-109G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KU-SN-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PeripheralNeuroectodermalTumorCellLineKUSN_CNhs11830_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10697-109G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF619BGU ENCSR055FQB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217 ZNF217 ENCSR055FQB signal 2 1590 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/f7964fb2-a1a2-4206-bd0b-8db524f6e9db/ENCFF619BGU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217 ZNF217 ENCSR055FQB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR055FQB Signal\ track wgEncodeReg4TfChip_ENCFF619BGU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF888YYK ENCSR169CRN Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 1590 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/23a20f71-1e31-48cb-a9ca-38bba3a0d1fb/ENCFF888YYK.bigWig\ color 255,0,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR169CRN Signal\ track wgEncodeReg4Epigenetics_ENCFF888YYK\ type bigWig\ visibility full\ ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_ctss_fwd Cl:KU812+ bigWig chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_forward 0 1591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aKU812.CNhs10727.10409-106B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10409-106B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KU812+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_tpm_fwd Cl:KU812+ bigWig chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_forward 1 1591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aKU812.CNhs10727.10409-106B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10409-106B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KU812+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF675RCN ENCSR055WBT Peak bigBed 5 Body of pancreas tissue male adult (37 years) POLR2A peaks 4 1591 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/3f783f2e-0d0c-4e38-8346-288fad143340/ENCFF675RCN.bigBed\ labelFields none\ longLabel Body of pancreas tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR055WBT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF675RCN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF431LDT ENCSR169KNO Peak bigBed 5 Progenitor cell of endocrine pancreas DNase peak 4 1591 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/8b253de0-b273-4a22-9a88-d58c4c35df33/ENCFF431LDT.bigBed\ color 6,218,147\ labelFields none\ longLabel Progenitor cell of endocrine pancreas DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR169KNO Peak\ track wgEncodeReg4Epigenetics_ENCFF431LDT\ type bigBed 5\ visibility squish\ ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_ctss_rev Cl:KU812- bigWig chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_reverse 0 1592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aKU812.CNhs10727.10409-106B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10409-106B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KU812-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_tpm_rev Cl:KU812- bigWig chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_reverse 1 1592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20cell%20line%3aKU812.CNhs10727.10409-106B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia cell line:KU812_CNhs10727_10409-106B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10409-106B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KU812-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCellLineKU812_CNhs10727_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10409-106B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF129ACR ENCSR055WBT Signal bigWig Body of pancreas tissue male adult (37 years) POLR2A ENCSR055WBT signal 2 1592 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/d6399474-54dd-49b6-99f7-4de9dc75f89b/ENCFF129ACR.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue male adult (37 years) POLR2A ENCSR055WBT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR055WBT Signal\ track wgEncodeReg4TfChip_ENCFF129ACR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF865UWE ENCSR169KNO Signal bigWig Progenitor cell of endocrine pancreas DNase signal 2 1592 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/25c074b5-04e0-4da2-a357-c7b2b2c33451/ENCFF865UWE.bigWig\ color 6,218,147\ longLabel Progenitor cell of endocrine pancreas DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR169KNO Signal\ track wgEncodeReg4Epigenetics_ENCFF865UWE\ type bigWig\ visibility full\ RhabdomyosarcomaCellLineKYM1_CNhs11877_ctss_fwd Cl:KYM-1+ bigWig rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_forward 0 1593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aKYM-1.CNhs11877.10787-110H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10787-110H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KYM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RhabdomyosarcomaCellLineKYM1_CNhs11877_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4\ urlLabel FANTOM5 Details:\ RhabdomyosarcomaCellLineKYM1_CNhs11877_tpm_fwd Cl:KYM-1+ bigWig rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_forward 1 1593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aKYM-1.CNhs11877.10787-110H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10787-110H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KYM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RhabdomyosarcomaCellLineKYM1_CNhs11877_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF726HHS ENCSR055ZIA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570 ZNF570 peaks 4 1593 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/8b9eb3f9-84bd-4c91-b698-f96e63a86b9e/ENCFF726HHS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570 ZNF570 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR055ZIA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF726HHS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF646HRG ENCSR170MAJ Peak bigBed 5 Spleen tissue male child 3 years H3K27ac peak 4 1593 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/2c61f04f-3425-42f4-8d14-0e27ee3572d7/ENCFF646HRG.bigBed\ color 181,145,0\ longLabel Spleen tissue male child 3 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR170MAJ Peak\ track wgEncodeReg4Epigenetics_ENCFF646HRG\ type bigBed 5\ visibility squish\ RhabdomyosarcomaCellLineKYM1_CNhs11877_ctss_rev Cl:KYM-1- bigWig rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_reverse 0 1594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aKYM-1.CNhs11877.10787-110H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10787-110H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:KYM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RhabdomyosarcomaCellLineKYM1_CNhs11877_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4\ urlLabel FANTOM5 Details:\ RhabdomyosarcomaCellLineKYM1_CNhs11877_tpm_rev Cl:KYM-1- bigWig rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_reverse 1 1594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aKYM-1.CNhs11877.10787-110H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel rhabdomyosarcoma cell line:KYM-1_CNhs11877_10787-110H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10787-110H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:KYM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RhabdomyosarcomaCellLineKYM1_CNhs11877_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10787-110H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF069QZG ENCSR055ZIA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570 ZNF570 ENCSR055ZIA signal 2 1594 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/e605c02b-98ff-4f2c-bcef-e9eca15d5d37/ENCFF069QZG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF570 ZNF570 ENCSR055ZIA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR055ZIA Signal\ track wgEncodeReg4TfChip_ENCFF069QZG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF897ARW ENCSR170MAJ Signal bigWig Spleen tissue male child 3 years H3K27ac signal 2 1594 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/30457153-601c-4cdf-9c02-b0afe50d685a/ENCFF897ARW.bigWig\ color 181,145,0\ longLabel Spleen tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR170MAJ Signal\ track wgEncodeReg4Epigenetics_ENCFF897ARW\ type bigWig\ visibility full\ SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_ctss_fwd Cl:LC-1F+ bigWig squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_forward 0 1595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aLC-1F.CNhs14238.10457-106G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10457-106G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LC-1F+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_tpm_fwd Cl:LC-1F+ bigWig squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_forward 1 1595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aLC-1F.CNhs14238.10457-106G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10457-106G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LC-1F+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF631JNO ENCSR059KXR Peak bigBed 5 Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF peaks 4 1595 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/4ba8c0c7-34fc-42ac-a93a-a43af105c0d4/ENCFF631JNO.bigBed\ labelFields none\ longLabel Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR059KXR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF631JNO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF688HPU ENCSR170VSJ Peak bigBed 5 Muscle layer of colon tissue female adult 56 years H3K4me3 peak 4 1595 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7ea42e1e-815d-478d-8936-51c6501d987d/ENCFF688HPU.bigBed\ color 255,0,0\ longLabel Muscle layer of colon tissue female adult 56 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR170VSJ Peak\ track wgEncodeReg4Epigenetics_ENCFF688HPU\ type bigBed 5\ visibility squish\ SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_ctss_rev Cl:LC-1F- bigWig squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_reverse 0 1596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aLC-1F.CNhs14238.10457-106G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10457-106G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LC-1F-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_tpm_rev Cl:LC-1F- bigWig squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_reverse 1 1596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aLC-1F.CNhs14238.10457-106G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:LC-1F_CNhs14238_10457-106G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10457-106G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LC-1F-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineLC1F_CNhs14238_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10457-106G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF937OHJ ENCSR059KXR Signal bigWig Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF ENCSR059KXR signal 2 1596 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/f2b2d0fd-e875-49d2-8760-ecb8adfb7961/ENCFF937OHJ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF ENCSR059KXR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR059KXR Signal\ track wgEncodeReg4TfChip_ENCFF937OHJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF631LYE ENCSR170VSJ Signal bigWig Muscle layer of colon tissue female adult 56 years H3K4me3 signal 2 1596 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c95914cf-bac0-466a-b4b5-8be5878cd9fe/ENCFF631LYE.bigWig\ color 255,0,0\ longLabel Muscle layer of colon tissue female adult 56 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR170VSJ Signal\ track wgEncodeReg4Epigenetics_ENCFF631LYE\ type bigWig\ visibility full\ HepatomaCellLineLi7_CNhs11271_ctss_fwd Cl:Li-7+ bigWig hepatoma cell line:Li-7_CNhs11271_10484-107A7_forward 0 1597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoma%20cell%20line%3aLi-7.CNhs11271.10484-107A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hepatoma cell line:Li-7_CNhs11271_10484-107A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10484-107A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Li-7+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatomaCellLineLi7_CNhs11271_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7\ urlLabel FANTOM5 Details:\ HepatomaCellLineLi7_CNhs11271_tpm_fwd Cl:Li-7+ bigWig hepatoma cell line:Li-7_CNhs11271_10484-107A7_forward 1 1597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoma%20cell%20line%3aLi-7.CNhs11271.10484-107A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hepatoma cell line:Li-7_CNhs11271_10484-107A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10484-107A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Li-7+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepatomaCellLineLi7_CNhs11271_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF065NZG ENCSR061DGF Peak bigBed 5 GM23338 originated from GM23248 NANOG peaks 4 1597 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/71eafd39-7e9d-4e34-9f36-8d7ad7678565/ENCFF065NZG.bigBed\ labelFields none\ longLabel GM23338 originated from GM23248 NANOG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR061DGF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF065NZG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF352UGS ENCSR171APM Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase peak 4 1597 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/a08051aa-00f1-4679-b759-f5578247eafb/ENCFF352UGS.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR171APM Peak\ track wgEncodeReg4Epigenetics_ENCFF352UGS\ type bigBed 5\ visibility squish\ HepatomaCellLineLi7_CNhs11271_ctss_rev Cl:Li-7- bigWig hepatoma cell line:Li-7_CNhs11271_10484-107A7_reverse 0 1598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoma%20cell%20line%3aLi-7.CNhs11271.10484-107A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hepatoma cell line:Li-7_CNhs11271_10484-107A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10484-107A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Li-7-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatomaCellLineLi7_CNhs11271_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7\ urlLabel FANTOM5 Details:\ HepatomaCellLineLi7_CNhs11271_tpm_rev Cl:Li-7- bigWig hepatoma cell line:Li-7_CNhs11271_10484-107A7_reverse 1 1598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatoma%20cell%20line%3aLi-7.CNhs11271.10484-107A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hepatoma cell line:Li-7_CNhs11271_10484-107A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10484-107A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Li-7-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepatomaCellLineLi7_CNhs11271_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10484-107A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF360XLO ENCSR061DGF Signal bigWig GM23338 originated from GM23248 NANOG ENCSR061DGF signal 2 1598 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/64ae9780-71e1-4224-98e2-4f8702eaee77/ENCFF360XLO.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 NANOG ENCSR061DGF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR061DGF Signal\ track wgEncodeReg4TfChip_ENCFF360XLO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF424FVD ENCSR171APM Signal bigWig Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase signal 2 1598 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/ccd3669c-4743-4002-afb7-4c62b933014d/ENCFF424FVD.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR171APM Signal\ track wgEncodeReg4Epigenetics_ENCFF424FVD\ type bigWig\ visibility full\ HepaticMesenchymalTumorCellLineLI90_CNhs11868_ctss_fwd Cl:LI90+ bigWig hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_forward 0 1599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatic%20mesenchymal%20tumor%20cell%20line%3aLI90.CNhs11868.10778-110G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10778-110G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LI90+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepaticMesenchymalTumorCellLineLI90_CNhs11868_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4\ urlLabel FANTOM5 Details:\ HepaticMesenchymalTumorCellLineLI90_CNhs11868_tpm_fwd Cl:LI90+ bigWig hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_forward 1 1599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatic%20mesenchymal%20tumor%20cell%20line%3aLI90.CNhs11868.10778-110G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10778-110G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LI90+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HepaticMesenchymalTumorCellLineLI90_CNhs11868_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF974AQC ENCSR062JAC Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 1599 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/d257e320-d594-411a-875b-ca78831ce8a3/ENCFF974AQC.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR062JAC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF974AQC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF240NFH ENCSR172FMH Peak bigBed 5 Foreskin keratinocyte male newborn H3K4me3 peak 4 1599 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/85452677-09be-40ce-89a0-074ffa603686/ENCFF240NFH.bigBed\ color 255,0,0\ longLabel Foreskin keratinocyte male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR172FMH Peak\ track wgEncodeReg4Epigenetics_ENCFF240NFH\ type bigBed 5\ visibility squish\ HepaticMesenchymalTumorCellLineLI90_CNhs11868_ctss_rev Cl:LI90- bigWig hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_reverse 0 1600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatic%20mesenchymal%20tumor%20cell%20line%3aLI90.CNhs11868.10778-110G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10778-110G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LI90-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepaticMesenchymalTumorCellLineLI90_CNhs11868_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4\ urlLabel FANTOM5 Details:\ HepaticMesenchymalTumorCellLineLI90_CNhs11868_tpm_rev Cl:LI90- bigWig hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_reverse 1 1600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hepatic%20mesenchymal%20tumor%20cell%20line%3aLI90.CNhs11868.10778-110G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hepatic mesenchymal tumor cell line:LI90_CNhs11868_10778-110G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10778-110G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LI90-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HepaticMesenchymalTumorCellLineLI90_CNhs11868_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10778-110G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF968SXQ ENCSR062JAC Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR062JAC signal 2 1600 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/da2c57cf-0daa-447d-8ea4-e7c059ce0154/ENCFF968SXQ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR062JAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR062JAC Signal\ track wgEncodeReg4TfChip_ENCFF968SXQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF675CBC ENCSR172FMH Signal bigWig Foreskin keratinocyte male newborn H3K4me3 signal 2 1600 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8402d2b3-02f4-42f0-ba22-a363850df383/ENCFF675CBC.bigWig\ color 255,0,0\ longLabel Foreskin keratinocyte male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR172FMH Signal\ track wgEncodeReg4Epigenetics_ENCFF675CBC\ type bigWig\ visibility full\ SmallCellLungCarcinomaCellLineLK2_CNhs11285_ctss_fwd Cl:LK-2+ bigWig small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_forward 0 1601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aLK-2.CNhs11285.10541-107H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10541-107H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LK-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineLK2_CNhs11285_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineLK2_CNhs11285_tpm_fwd Cl:LK-2+ bigWig small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_forward 1 1601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aLK-2.CNhs11285.10541-107H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10541-107H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LK-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineLK2_CNhs11285_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF972HXJ ENCSR062QVQ Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) TAF1 peaks 4 1601 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/c684c0b2-03b8-4ba7-892a-a822cd52f085/ENCFF972HXJ.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR062QVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF972HXJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF668DFB ENCSR172LVU Peak bigBed 5 Sigmoid colon tissue male adult 54 years H3K4me3 peak 4 1601 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/bfdd33f2-0588-485d-baf0-b0b9e0312930/ENCFF668DFB.bigBed\ color 255,0,0\ longLabel Sigmoid colon tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR172LVU Peak\ track wgEncodeReg4Epigenetics_ENCFF668DFB\ type bigBed 5\ visibility squish\ SmallCellLungCarcinomaCellLineLK2_CNhs11285_ctss_rev Cl:LK-2- bigWig small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_reverse 0 1602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aLK-2.CNhs11285.10541-107H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10541-107H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LK-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineLK2_CNhs11285_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineLK2_CNhs11285_tpm_rev Cl:LK-2- bigWig small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_reverse 1 1602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aLK-2.CNhs11285.10541-107H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:LK-2_CNhs11285_10541-107H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10541-107H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LK-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineLK2_CNhs11285_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10541-107H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF031ZFB ENCSR062QVQ Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) TAF1 ENCSR062QVQ signal 2 1602 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/45bf3531-6131-4e9a-94c4-4c4e5f4043da/ENCFF031ZFB.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) TAF1 ENCSR062QVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR062QVQ Signal\ track wgEncodeReg4TfChip_ENCFF031ZFB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF886LUE ENCSR172LVU Signal bigWig Sigmoid colon tissue male adult 54 years H3K4me3 signal 2 1602 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/6c730ff5-c76c-414c-a9f9-1a77f2c00c98/ENCFF886LUE.bigWig\ color 255,0,0\ longLabel Sigmoid colon tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR172LVU Signal\ track wgEncodeReg4Epigenetics_ENCFF886LUE\ type bigWig\ visibility full\ GiantCellCarcinomaCellLineLU65_CNhs11274_ctss_fwd Cl:LU65+ bigWig giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_forward 0 1603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLU65.CNhs11274.10487-107B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10487-107B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LU65+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GiantCellCarcinomaCellLineLU65_CNhs11274_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1\ urlLabel FANTOM5 Details:\ GiantCellCarcinomaCellLineLU65_CNhs11274_tpm_fwd Cl:LU65+ bigWig giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_forward 1 1603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLU65.CNhs11274.10487-107B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10487-107B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LU65+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GiantCellCarcinomaCellLineLU65_CNhs11274_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF220PEX ENCSR064LJN Peak bigBed 5 A549 RFX5 peaks 4 1603 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/980679de-e38d-4f2f-b44f-eb98c03b8af4/ENCFF220PEX.bigBed\ labelFields none\ longLabel A549 RFX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR064LJN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF220PEX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF854ACL ENCSR172PVJ Peak bigBed 5 Stomach tissue male embryo 91 days DNase peak 4 1603 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/6b850462-0af8-4e80-a6f7-1e7afc80b297/ENCFF854ACL.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR172PVJ Peak\ track wgEncodeReg4Epigenetics_ENCFF854ACL\ type bigBed 5\ visibility squish\ GiantCellCarcinomaCellLineLU65_CNhs11274_ctss_rev Cl:LU65- bigWig giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_reverse 0 1604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLU65.CNhs11274.10487-107B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10487-107B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:LU65-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GiantCellCarcinomaCellLineLU65_CNhs11274_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1\ urlLabel FANTOM5 Details:\ GiantCellCarcinomaCellLineLU65_CNhs11274_tpm_rev Cl:LU65- bigWig giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_reverse 1 1604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLU65.CNhs11274.10487-107B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel giant cell carcinoma cell line:LU65_CNhs11274_10487-107B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10487-107B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:LU65-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GiantCellCarcinomaCellLineLU65_CNhs11274_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10487-107B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF575RJD ENCSR064LJN Signal bigWig A549 RFX5 ENCSR064LJN signal 2 1604 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/d55f9faf-ee67-4a8c-b68e-2276ea283d08/ENCFF575RJD.bigWig\ color 130,163,45\ longLabel A549 RFX5 ENCSR064LJN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR064LJN Signal\ track wgEncodeReg4TfChip_ENCFF575RJD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF657FRL ENCSR172PVJ Signal bigWig Stomach tissue male embryo 91 days DNase signal 2 1604 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/346749ec-d6cd-4f91-a766-b97f75b6fe86/ENCFF657FRL.bigWig\ color 6,218,147\ longLabel Stomach tissue male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR172PVJ Signal\ track wgEncodeReg4Epigenetics_ENCFF657FRL\ type bigWig\ visibility full\ GiantCellCarcinomaCellLineLu99B_CNhs10751_ctss_fwd Cl:Lu99B+ bigWig giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_forward 0 1605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLu99B.CNhs10751.10433-106E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10433-106E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Lu99B+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GiantCellCarcinomaCellLineLu99B_CNhs10751_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1\ urlLabel FANTOM5 Details:\ GiantCellCarcinomaCellLineLu99B_CNhs10751_tpm_fwd Cl:Lu99B+ bigWig giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_forward 1 1605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLu99B.CNhs10751.10433-106E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10433-106E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Lu99B+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GiantCellCarcinomaCellLineLu99B_CNhs10751_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF658MHR ENCSR065WUF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF17 KLF17 peaks 4 1605 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/b06be131-df4b-4d12-95ba-ec83f39effdc/ENCFF658MHR.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF17 KLF17 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR065WUF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF658MHR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF649UCH ENCSR173BJC Peak bigBed 5 Activated effector memory CD4-positive, alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak 4 1605 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/55054f34-1aee-4908-a07e-cdd2ee66e653/ENCFF649UCH.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated effector memory CD4-positive, alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR173BJC Peak\ track wgEncodeReg4Epigenetics_ENCFF649UCH\ type bigBed 5\ visibility squish\ GiantCellCarcinomaCellLineLu99B_CNhs10751_ctss_rev Cl:Lu99B- bigWig giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_reverse 0 1606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLu99B.CNhs10751.10433-106E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10433-106E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Lu99B-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GiantCellCarcinomaCellLineLu99B_CNhs10751_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1\ urlLabel FANTOM5 Details:\ GiantCellCarcinomaCellLineLu99B_CNhs10751_tpm_rev Cl:Lu99B- bigWig giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_reverse 1 1606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/giant%20cell%20carcinoma%20cell%20line%3aLu99B.CNhs10751.10433-106E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel giant cell carcinoma cell line:Lu99B_CNhs10751_10433-106E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10433-106E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Lu99B-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GiantCellCarcinomaCellLineLu99B_CNhs10751_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10433-106E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF469SHE ENCSR065WUF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF17 KLF17 ENCSR065WUF signal 2 1606 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/93d4f109-4fe6-4c10-b9be-cbf61f6f097a/ENCFF469SHE.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF17 KLF17 ENCSR065WUF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR065WUF Signal\ track wgEncodeReg4TfChip_ENCFF469SHE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF380MCL ENCSR173BJC Signal bigWig Activated effector memory CD4-positive, alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal 2 1606 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/f3ea6eb4-422d-4993-a6c6-26dbdb8ee79a/ENCFF380MCL.bigWig\ color 6,218,147\ longLabel Activated effector memory CD4-positive, alpha-beta T cell male adult 42 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR173BJC Signal\ track wgEncodeReg4Epigenetics_ENCFF380MCL\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM7CellLineMMOK_CNhs13049_ctss_fwd Cl:M-MOK+ bigWig acute myeloid leukemia (FAB M7) cell line:M-MOK_CNhs13049_10699-109G6_forward 0 1607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10699-109G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aM-MOK.CNhs13049.10699-109G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M7) cell line:M-MOK_CNhs13049_10699-109G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10699-109G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:M-MOK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM7CellLineMMOK_CNhs13049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10699-109G6\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM7CellLineMMOK_CNhs13049_tpm_fwd Cl:M-MOK+ bigWig acute myeloid leukemia (FAB M7) cell line:M-MOK_CNhs13049_10699-109G6_forward 1 1607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10699-109G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aM-MOK.CNhs13049.10699-109G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M7) cell line:M-MOK_CNhs13049_10699-109G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10699-109G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:M-MOK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM7CellLineMMOK_CNhs13049_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10699-109G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF860ZIW ENCSR065XVO Peak bigBed 5 K562 CHAMP1 peaks 4 1607 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/97eb9ca9-4336-4b31-aae6-a314c2796fe0/ENCFF860ZIW.bigBed\ labelFields none\ longLabel K562 CHAMP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR065XVO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF860ZIW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF879NDO ENCSR173HPQ Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase peak 4 1607 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/999e8f2e-57e1-4848-8d23-62487afe2206/ENCFF879NDO.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR173NHL Peak\ track wgEncodeReg4Epigenetics_ENCFF513FTJ\ type bigBed 5\ visibility squish\ MucinousCystadenocarcinomaCellLineMCAS_CNhs11873_ctss_rev Cl:MCAS- bigWig mucinous cystadenocarcinoma cell line:MCAS_CNhs11873_10784-110H1_reverse 0 1610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10784-110H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mucinous%20cystadenocarcinoma%20cell%20line%3aMCAS.CNhs11873.10784-110H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mucinous cystadenocarcinoma cell line:MCAS_CNhs11873_10784-110H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10784-110H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MCAS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MucinousCystadenocarcinomaCellLineMCAS_CNhs11873_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10784-110H1\ urlLabel FANTOM5 Details:\ MucinousCystadenocarcinomaCellLineMCAS_CNhs11873_tpm_rev Cl:MCAS- bigWig mucinous cystadenocarcinoma cell line:MCAS_CNhs11873_10784-110H1_reverse 1 1610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10784-110H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mucinous%20cystadenocarcinoma%20cell%20line%3aMCAS.CNhs11873.10784-110H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mucinous cystadenocarcinoma cell line:MCAS_CNhs11873_10784-110H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10784-110H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MCAS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MucinousCystadenocarcinomaCellLineMCAS_CNhs11873_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10784-110H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF222ASF ENCSR066EBK Signal bigWig HepG2 FOXA2 ENCSR066EBK signal 2 1610 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/e9332f1d-0474-4344-aef4-111bcd209e51/ENCFF222ASF.bigWig\ color 137,152,82\ longLabel HepG2 FOXA2 ENCSR066EBK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066EBK Signal\ track wgEncodeReg4TfChip_ENCFF222ASF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF011RNN ENCSR173NHL Signal bigWig Head of caudate nucleus tissue female adult 90 or above years DNase signal 2 1610 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/7c30cdc0-b879-497a-b154-cfffc769e65f/ENCFF011RNN.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR173NHL Signal\ track wgEncodeReg4Epigenetics_ENCFF011RNN\ type bigWig\ visibility full\ BreastCarcinomaCellLineMCF7_CNhs11943_ctss_fwd Cl:MCF7+ bigWig breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_forward 0 1611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMCF7.CNhs11943.10482-107A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10482-107A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MCF7+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BreastCarcinomaCellLineMCF7_CNhs11943_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5\ urlLabel FANTOM5 Details:\ BreastCarcinomaCellLineMCF7_CNhs11943_tpm_fwd Cl:MCF7+ bigWig breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_forward 1 1611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMCF7.CNhs11943.10482-107A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10482-107A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MCF7+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BreastCarcinomaCellLineMCF7_CNhs11943_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF575OMW ENCSR066EWR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2 ZMYM2 peaks 4 1611 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/6886bdb7-c3e6-4507-9787-a50e787ceede/ENCFF575OMW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2 ZMYM2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR173YSO Peak\ track wgEncodeReg4Epigenetics_ENCFF747BWW\ type bigBed 5\ visibility squish\ BreastCarcinomaCellLineMCF7_CNhs11943_ctss_rev Cl:MCF7- bigWig breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_reverse 0 1612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMCF7.CNhs11943.10482-107A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10482-107A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MCF7-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BreastCarcinomaCellLineMCF7_CNhs11943_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5\ urlLabel FANTOM5 Details:\ BreastCarcinomaCellLineMCF7_CNhs11943_tpm_rev Cl:MCF7- bigWig breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_reverse 1 1612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMCF7.CNhs11943.10482-107A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel breast carcinoma cell line:MCF7_CNhs11943_10482-107A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10482-107A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MCF7-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BreastCarcinomaCellLineMCF7_CNhs11943_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10482-107A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF004HMA ENCSR066EWR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2 ZMYM2 ENCSR066EWR signal 2 1612 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/8ad8ffc4-b0fc-4acb-9d8d-efd8d7f9927c/ENCFF004HMA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM2 ZMYM2 ENCSR066EWR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066EWR Signal\ track wgEncodeReg4TfChip_ENCFF004HMA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF179VUT ENCSR173YSO Signal bigWig Middle frontal area 46 tissue female adult 79 years DNase signal 2 1612 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/c38df2a9-84f7-4eab-b760-73b1582e13e3/ENCFF179VUT.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 79 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR173YSO Signal\ track wgEncodeReg4Epigenetics_ENCFF179VUT\ type bigWig\ visibility full\ BreastCarcinomaCellLineMDAMB453_CNhs10736_ctss_fwd Cl:MDA-MB-453+ bigWig breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_forward 0 1613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMDA-MB-453.CNhs10736.10419-106C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10419-106C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MDA-MB-453+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BreastCarcinomaCellLineMDAMB453_CNhs10736_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5\ urlLabel FANTOM5 Details:\ BreastCarcinomaCellLineMDAMB453_CNhs10736_tpm_fwd Cl:MDA-MB-453+ bigWig breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_forward 1 1613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMDA-MB-453.CNhs10736.10419-106C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10419-106C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MDA-MB-453+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BreastCarcinomaCellLineMDAMB453_CNhs10736_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF725CKS ENCSR066FXN Peak bigBed 5 HepG2 HNRNPH1 peaks 4 1613 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/6cd6b464-4220-445a-9df7-766473bd0be0/ENCFF725CKS.bigBed\ labelFields none\ longLabel HepG2 HNRNPH1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066FXN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF725CKS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF917ZCZ ENCSR174DBN Peak bigBed 5 Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 1613 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/a54fc803-fe6f-478c-8fd6-a824e96ad2bb/ENCFF917ZCZ.bigBed\ color 181,145,0\ longLabel Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174DBN Peak\ track wgEncodeReg4Epigenetics_ENCFF917ZCZ\ type bigBed 5\ visibility squish\ BreastCarcinomaCellLineMDAMB453_CNhs10736_ctss_rev Cl:MDA-MB-453- bigWig breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_reverse 0 1614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMDA-MB-453.CNhs10736.10419-106C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10419-106C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MDA-MB-453-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BreastCarcinomaCellLineMDAMB453_CNhs10736_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5\ urlLabel FANTOM5 Details:\ BreastCarcinomaCellLineMDAMB453_CNhs10736_tpm_rev Cl:MDA-MB-453- bigWig breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_reverse 1 1614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%20carcinoma%20cell%20line%3aMDA-MB-453.CNhs10736.10419-106C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel breast carcinoma cell line:MDA-MB-453_CNhs10736_10419-106C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10419-106C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MDA-MB-453-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BreastCarcinomaCellLineMDAMB453_CNhs10736_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10419-106C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF699ETP ENCSR066FXN Signal bigWig HepG2 HNRNPH1 ENCSR066FXN signal 2 1614 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ea5c091e-32a2-4297-b061-47de1a19ad60/ENCFF699ETP.bigWig\ color 137,152,82\ longLabel HepG2 HNRNPH1 ENCSR066FXN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066FXN Signal\ track wgEncodeReg4TfChip_ENCFF699ETP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF135PTF ENCSR174DBN Signal bigWig Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 1614 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/96c558a9-d433-4a5a-b2bd-02d8ddb69303/ENCFF135PTF.bigWig\ color 181,145,0\ longLabel Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174DBN Signal\ track wgEncodeReg4Epigenetics_ENCFF135PTF\ type bigWig\ visibility full\ CervicalCancerCellLineME180_CNhs11289_ctss_fwd Cl:ME-180+ bigWig cervical cancer cell line:ME-180_CNhs11289_10553-107I4_forward 0 1615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aME-180.CNhs11289.10553-107I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cervical cancer cell line:ME-180_CNhs11289_10553-107I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10553-107I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ME-180+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CervicalCancerCellLineME180_CNhs11289_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4\ urlLabel FANTOM5 Details:\ CervicalCancerCellLineME180_CNhs11289_tpm_fwd Cl:ME-180+ bigWig cervical cancer cell line:ME-180_CNhs11289_10553-107I4_forward 1 1615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aME-180.CNhs11289.10553-107I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cervical cancer cell line:ME-180_CNhs11289_10553-107I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10553-107I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ME-180+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CervicalCancerCellLineME180_CNhs11289_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF690LBT ENCSR066GBX Peak bigBed 5 Right atrium auricular region tissue female adult (53 years) CTCF peaks 4 1615 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/cc97dbfc-e403-4277-bd58-75d18d7a712f/ENCFF690LBT.bigBed\ labelFields none\ longLabel Right atrium auricular region tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066GBX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF690LBT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF756DKI ENCSR174GMQ Peak bigBed 5 Heart right ventricle tissue male adult 69 years H3K27ac peak 4 1615 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/42a3ce9e-f795-4a6c-bf53-ddb6f0a6bd63/ENCFF756DKI.bigBed\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 69 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174GMQ Peak\ track wgEncodeReg4Epigenetics_ENCFF756DKI\ type bigBed 5\ visibility squish\ CervicalCancerCellLineME180_CNhs11289_ctss_rev Cl:ME-180- bigWig cervical cancer cell line:ME-180_CNhs11289_10553-107I4_reverse 0 1616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aME-180.CNhs11289.10553-107I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cervical cancer cell line:ME-180_CNhs11289_10553-107I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10553-107I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ME-180-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CervicalCancerCellLineME180_CNhs11289_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4\ urlLabel FANTOM5 Details:\ CervicalCancerCellLineME180_CNhs11289_tpm_rev Cl:ME-180- bigWig cervical cancer cell line:ME-180_CNhs11289_10553-107I4_reverse 1 1616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervical%20cancer%20cell%20line%3aME-180.CNhs11289.10553-107I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cervical cancer cell line:ME-180_CNhs11289_10553-107I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10553-107I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ME-180-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CervicalCancerCellLineME180_CNhs11289_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10553-107I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF886TBW ENCSR066GBX Signal bigWig Right atrium auricular region tissue female adult (53 years) CTCF ENCSR066GBX signal 2 1616 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/208b8a70-d0a2-49e4-88a8-6afa47f49998/ENCFF886TBW.bigWig\ color 116,50,165\ longLabel Right atrium auricular region tissue female adult (53 years) CTCF ENCSR066GBX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066GBX Signal\ track wgEncodeReg4TfChip_ENCFF886TBW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF346GTT ENCSR174GMQ Signal bigWig Heart right ventricle tissue male adult 69 years H3K27ac signal 2 1616 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/00740391-6e23-45b5-811f-e53915811123/ENCFF346GTT.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 69 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174GMQ Signal\ track wgEncodeReg4Epigenetics_ENCFF346GTT\ type bigWig\ visibility full\ LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_ctss_fwd Cl:MEG-01+ bigWig leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_forward 0 1617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leukemia%2c%20chronic%20megakaryoblastic%20cell%20line%3aMEG-01.CNhs11859.10752-110D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10752-110D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MEG-01+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5\ urlLabel FANTOM5 Details:\ LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_tpm_fwd Cl:MEG-01+ bigWig leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_forward 1 1617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leukemia%2c%20chronic%20megakaryoblastic%20cell%20line%3aMEG-01.CNhs11859.10752-110D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10752-110D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MEG-01+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF782EZS ENCSR066TET Peak bigBed 5 MCF-7 RFX1 peaks 4 1617 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/58fe3d6d-fb6a-4465-8c31-92e684decfd2/ENCFF782EZS.bigBed\ labelFields none\ longLabel MCF-7 RFX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066TET Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF782EZS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF918HIO ENCSR174GXG Peak bigBed 5 Muscle of back tissue male embryo 101 days DNase peak 4 1617 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/f3ede708-cb87-44c5-8154-e5e1cf1bf11a/ENCFF918HIO.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue male embryo 101 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174GXG Peak\ track wgEncodeReg4Epigenetics_ENCFF918HIO\ type bigBed 5\ visibility squish\ LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_ctss_rev Cl:MEG-01- bigWig leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_reverse 0 1618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leukemia%2c%20chronic%20megakaryoblastic%20cell%20line%3aMEG-01.CNhs11859.10752-110D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10752-110D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MEG-01-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5\ urlLabel FANTOM5 Details:\ LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_tpm_rev Cl:MEG-01- bigWig leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_reverse 1 1618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/leukemia%2c%20chronic%20megakaryoblastic%20cell%20line%3aMEG-01.CNhs11859.10752-110D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel leukemia, chronic megakaryoblastic cell line:MEG-01_CNhs11859_10752-110D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10752-110D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MEG-01-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LeukemiaChronicMegakaryoblasticCellLineMEG01_CNhs11859_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10752-110D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF087JOQ ENCSR066TET Signal bigWig MCF-7 RFX1 ENCSR066TET signal 2 1618 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/0b4cc60e-cdec-4454-b9cb-963317ea4036/ENCFF087JOQ.bigWig\ color 65,171,173\ longLabel MCF-7 RFX1 ENCSR066TET signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR066TET Signal\ track wgEncodeReg4TfChip_ENCFF087JOQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF997ASP ENCSR174GXG Signal bigWig Muscle of back tissue male embryo 101 days DNase signal 2 1618 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/a2705800-950b-44c5-b947-c33482532f76/ENCFF997ASP.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174GXG Signal\ track wgEncodeReg4Epigenetics_ENCFF997ASP\ type bigWig\ visibility full\ ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_ctss_fwd Cl:MEG-A2+ bigWig chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_forward 0 1619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20%28CML%29%20cell%20line%3aMEG-A2.CNhs11865.10766-110F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10766-110F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MEG-A2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_tpm_fwd Cl:MEG-A2+ bigWig chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_forward 1 1619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20%28CML%29%20cell%20line%3aMEG-A2.CNhs11865.10766-110F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10766-110F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MEG-A2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF389RCI ENCSR067HGI Peak bigBed 5 A549 CHD2 peaks 4 1619 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/54e7b543-130f-44db-874a-ba8414959123/ENCFF389RCI.bigBed\ labelFields none\ longLabel A549 CHD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR067HGI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF389RCI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF563SUY ENCSR174JMM Peak bigBed 5 Heart tissue female embryo 117 days DNase peak 4 1619 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/0dfacdae-b44c-41ab-a878-0362166b8973/ENCFF563SUY.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue female embryo 117 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174JMM Peak\ track wgEncodeReg4Epigenetics_ENCFF563SUY\ type bigBed 5\ visibility squish\ ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_ctss_rev Cl:MEG-A2- bigWig chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_reverse 0 1620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20%28CML%29%20cell%20line%3aMEG-A2.CNhs11865.10766-110F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10766-110F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MEG-A2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1\ urlLabel FANTOM5 Details:\ ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_tpm_rev Cl:MEG-A2- bigWig chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_reverse 1 1620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20myelogenous%20leukemia%20%28CML%29%20cell%20line%3aMEG-A2.CNhs11865.10766-110F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic myelogenous leukemia (CML) cell line:MEG-A2_CNhs11865_10766-110F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10766-110F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MEG-A2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicMyelogenousLeukemiaCMLCellLineMEGA2_CNhs11865_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10766-110F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF804ZYP ENCSR067HGI Signal bigWig A549 CHD2 ENCSR067HGI signal 2 1620 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/175217e0-ae20-40ac-905e-47ae160053a3/ENCFF804ZYP.bigWig\ color 130,163,45\ longLabel A549 CHD2 ENCSR067HGI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR067HGI Signal\ track wgEncodeReg4TfChip_ENCFF804ZYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF673FBL ENCSR174JMM Signal bigWig Heart tissue female embryo 117 days DNase signal 2 1620 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/24811539-8e03-45c6-a1e3-1e6c3d69f0e1/ENCFF673FBL.bigWig\ color 6,218,147\ longLabel Heart tissue female embryo 117 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174JMM Signal\ track wgEncodeReg4Epigenetics_ENCFF673FBL\ type bigWig\ visibility full\ MesotheliomaCellLineMero14TechRep1_CNhs13065_ctss_fwd Cl:Mero-14Tr1+ bigWig mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_forward 0 1621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep1.CNhs13065.10849-111F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-14Tr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero14TechRep1_CNhs13065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero14TechRep1_CNhs13065_tpm_fwd Cl:Mero-14Tr1+ bigWig mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_forward 1 1621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep1.CNhs13065.10849-111F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-14Tr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero14TechRep1_CNhs13065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF258PHG ENCSR068DJS Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue male adult (90 or above years) CTCF peaks 4 1621 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/86553391-08fc-416b-90b7-2dc13a0566cb/ENCFF258PHG.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue male adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068DJS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF258PHG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF481UED ENCSR174SUM Peak bigBed 5 Activated naive CD4-positive, alpha-beta T cell male adult 48 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak 4 1621 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/f3fbd4b4-12da-446f-b10a-3660c235a38b/ENCFF481UED.bigBed\ color 2,199,185\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 48 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174SUM Peak\ track wgEncodeReg4Epigenetics_ENCFF481UED\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero14TechRep1_CNhs13065_ctss_rev Cl:Mero-14Tr1- bigWig mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_reverse 0 1622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep1.CNhs13065.10849-111F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-14Tr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero14TechRep1_CNhs13065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero14TechRep1_CNhs13065_tpm_rev Cl:Mero-14Tr1- bigWig mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_reverse 1 1622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-14%2c%20tech_rep1.CNhs13065.10849-111F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-14, tech_rep1_CNhs13065_10849-111F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10849-111F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-14Tr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero14TechRep1_CNhs13065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10849-111F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF457ZFQ ENCSR068DJS Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue male adult (90 or above years) CTCF ENCSR068DJS signal 2 1622 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/8b13d368-c1b8-4d23-8cc4-5574095fdf5b/ENCFF457ZFQ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue male adult (90 or above years) CTCF ENCSR068DJS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068DJS Signal\ track wgEncodeReg4TfChip_ENCFF457ZFQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF343VRK ENCSR174SUM Signal bigWig Activated naive CD4-positive, alpha-beta T cell male adult 48 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal 2 1622 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/159aae0c-c048-44ab-a5d1-71e6e8c3f689/ENCFF343VRK.bigWig\ color 2,199,185\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 48 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR174SUM Signal\ track wgEncodeReg4Epigenetics_ENCFF343VRK\ type bigWig\ visibility full\ MesotheliomaCellLineMero25_CNhs13066_ctss_fwd Cl:Mero-25+ bigWig mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_forward 0 1623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-25.CNhs13066.10850-111F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10850-111F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-25+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero25_CNhs13066_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero25_CNhs13066_tpm_fwd Cl:Mero-25+ bigWig mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_forward 1 1623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-25.CNhs13066.10850-111F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10850-111F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-25+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero25_CNhs13066_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF161DPW ENCSR068HEE Peak bigBed 5 Left ventricle myocardium inferior tissue male adult (60 years) CTCF peaks 4 1623 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/99c3f273-cf59-40de-af78-b80eae320251/ENCFF161DPW.bigBed\ labelFields none\ longLabel Left ventricle myocardium inferior tissue male adult (60 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068HEE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF161DPW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF483TFF ENCSR175FLL Peak bigBed 5 Coronary artery tissue female adult 53 years CTCF peak 4 1623 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/903e45c8-c120-4476-8e07-afd442bb20d7/ENCFF483TFF.bigBed\ color 0,176,240\ labelFields none\ longLabel Coronary artery tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175FLL Peak\ track wgEncodeReg4Epigenetics_ENCFF483TFF\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero25_CNhs13066_ctss_rev Cl:Mero-25- bigWig mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_reverse 0 1624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-25.CNhs13066.10850-111F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10850-111F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-25-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero25_CNhs13066_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero25_CNhs13066_tpm_rev Cl:Mero-25- bigWig mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_reverse 1 1624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-25.CNhs13066.10850-111F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-25_CNhs13066_10850-111F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10850-111F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-25-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero25_CNhs13066_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10850-111F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF829QZW ENCSR068HEE Signal bigWig Left ventricle myocardium inferior tissue male adult (60 years) CTCF ENCSR068HEE signal 2 1624 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/8cc7d27e-f4c8-40ad-a781-2600a05804d2/ENCFF829QZW.bigWig\ color 116,50,165\ longLabel Left ventricle myocardium inferior tissue male adult (60 years) CTCF ENCSR068HEE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068HEE Signal\ track wgEncodeReg4TfChip_ENCFF829QZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF341RAH ENCSR175FLL Signal bigWig Coronary artery tissue female adult 53 years CTCF signal 2 1624 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/83a10a68-fd7b-4503-9b7f-e4d9d1bbdb41/ENCFF341RAH.bigWig\ color 0,176,240\ longLabel Coronary artery tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175FLL Signal\ track wgEncodeReg4Epigenetics_ENCFF341RAH\ type bigWig\ visibility full\ MesotheliomaCellLineMero41_CNhs13067_ctss_fwd Cl:Mero-41+ bigWig mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_forward 0 1625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-41.CNhs13067.10851-111F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10851-111F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-41+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero41_CNhs13067_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero41_CNhs13067_tpm_fwd Cl:Mero-41+ bigWig mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_forward 1 1625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-41.CNhs13067.10851-111F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10851-111F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-41+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero41_CNhs13067_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF055IHR ENCSR068WNI Peak bigBed 5 Upper lobe of left lung tissue female adult (53 years) POLR2A peaks 4 1625 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/731b631d-1e7a-471d-8d75-d7b76cfe4d11/ENCFF055IHR.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068WNI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF055IHR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF558YEL ENCSR175IGC Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K27ac peak 4 1625 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/6be569e5-7a2c-42cf-a7b0-77ee3aa0a4fe/ENCFF558YEL.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175IGC Peak\ track wgEncodeReg4Epigenetics_ENCFF558YEL\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero41_CNhs13067_ctss_rev Cl:Mero-41- bigWig mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_reverse 0 1626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-41.CNhs13067.10851-111F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10851-111F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-41-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero41_CNhs13067_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero41_CNhs13067_tpm_rev Cl:Mero-41- bigWig mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_reverse 1 1626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-41.CNhs13067.10851-111F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-41_CNhs13067_10851-111F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10851-111F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-41-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero41_CNhs13067_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10851-111F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF347NAJ ENCSR068WNI Signal bigWig Upper lobe of left lung tissue female adult (53 years) POLR2A ENCSR068WNI signal 2 1626 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/b594ded0-2429-467c-8c9d-2999b803ae7d/ENCFF347NAJ.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (53 years) POLR2A ENCSR068WNI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068WNI Signal\ track wgEncodeReg4TfChip_ENCFF347NAJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF165YML ENCSR175IGC Signal bigWig CD4-positive, alpha-beta memory T cell H3K27ac signal 2 1626 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/0f3b7711-5c6c-421d-83d9-e54847568ee0/ENCFF165YML.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175IGC Signal\ track wgEncodeReg4Epigenetics_ENCFF165YML\ type bigWig\ visibility full\ MesotheliomaCellLineMero48a_CNhs13068_ctss_fwd Cl:Mero-48a+ bigWig mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_forward 0 1627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-48a.CNhs13068.10852-111F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10852-111F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-48a+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero48a_CNhs13068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero48a_CNhs13068_tpm_fwd Cl:Mero-48a+ bigWig mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_forward 1 1627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-48a.CNhs13068.10852-111F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10852-111F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-48a+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero48a_CNhs13068_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF362XDA ENCSR068ZQR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF777 ZNF777 peaks 4 1627 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/3253c7ae-6a96-4de7-8134-0ab729e2d538/ENCFF362XDA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF777 ZNF777 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068ZQR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF362XDA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF784QFM ENCSR175IWT Peak bigBed 5 Kidney tubule cell female adult 80 years and male adult 62 years DNase peak 4 1627 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/b1e8078a-b312-4212-86cb-6b89c2ed058e/ENCFF784QFM.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tubule cell female adult 80 years and male adult 62 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175IWT Peak\ track wgEncodeReg4Epigenetics_ENCFF784QFM\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero48a_CNhs13068_ctss_rev Cl:Mero-48a- bigWig mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_reverse 0 1628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-48a.CNhs13068.10852-111F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10852-111F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-48a-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero48a_CNhs13068_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero48a_CNhs13068_tpm_rev Cl:Mero-48a- bigWig mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_reverse 1 1628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-48a.CNhs13068.10852-111F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-48a_CNhs13068_10852-111F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10852-111F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-48a-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero48a_CNhs13068_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10852-111F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF954YXL ENCSR068ZQR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF777 ZNF777 ENCSR068ZQR signal 2 1628 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/1d22aeef-d7c6-4597-b80d-aaa7e4ecec20/ENCFF954YXL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF777 ZNF777 ENCSR068ZQR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR068ZQR Signal\ track wgEncodeReg4TfChip_ENCFF954YXL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF995SHL ENCSR175IWT Signal bigWig Kidney tubule cell female adult 80 years and male adult 62 years DNase signal 2 1628 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/780343e3-c4ed-446c-9e57-ddb9b5d4910a/ENCFF995SHL.bigWig\ color 6,218,147\ longLabel Kidney tubule cell female adult 80 years and male adult 62 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175IWT Signal\ track wgEncodeReg4Epigenetics_ENCFF995SHL\ type bigWig\ visibility full\ MesotheliomaCellLineMero82_CNhs13069_ctss_fwd Cl:Mero-82+ bigWig mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_forward 0 1629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-82.CNhs13069.10853-111F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10853-111F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-82+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero82_CNhs13069_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero82_CNhs13069_tpm_fwd Cl:Mero-82+ bigWig mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_forward 1 1629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-82.CNhs13069.10853-111F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10853-111F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-82+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero82_CNhs13069_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF472NFV ENCSR069DPL Peak bigBed 5 Neural progenitor cell originated from H9 EZH2 peaks 4 1629 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3e30d790-4c08-40e4-bfb9-f7c82f410a86/ENCFF472NFV.bigBed\ labelFields none\ longLabel Neural progenitor cell originated from H9 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR069DPL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF472NFV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF068VDA ENCSR175OHT Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase peak 4 1629 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7d610d78-6857-4a63-932e-fd48648f54d8/ENCFF068VDA.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175OHT Peak\ track wgEncodeReg4Epigenetics_ENCFF068VDA\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero82_CNhs13069_ctss_rev Cl:Mero-82- bigWig mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_reverse 0 1630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-82.CNhs13069.10853-111F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10853-111F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero82_CNhs13069_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero82_CNhs13069_tpm_rev Cl:Mero-82- bigWig mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_reverse 1 1630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-82.CNhs13069.10853-111F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-82_CNhs13069_10853-111F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10853-111F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero82_CNhs13069_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10853-111F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF337REC ENCSR069DPL Signal bigWig Neural progenitor cell originated from H9 EZH2 ENCSR069DPL signal 2 1630 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e2a57fbc-1f69-475d-8f44-4e1055eb54c3/ENCFF337REC.bigWig\ color 155,155,18\ longLabel Neural progenitor cell originated from H9 EZH2 ENCSR069DPL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR069DPL Signal\ track wgEncodeReg4TfChip_ENCFF337REC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF162YDK ENCSR175OHT Signal bigWig Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase signal 2 1630 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b2e482d5-da53-4b31-8255-506c265e16f3/ENCFF162YDK.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175OHT Signal\ track wgEncodeReg4Epigenetics_ENCFF162YDK\ type bigWig\ visibility full\ MesotheliomaCellLineMero83_CNhs13070_ctss_fwd Cl:Mero-83+ bigWig mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_forward 0 1631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-83.CNhs13070.10854-111F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10854-111F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-83+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero83_CNhs13070_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero83_CNhs13070_tpm_fwd Cl:Mero-83+ bigWig mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_forward 1 1631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-83.CNhs13070.10854-111F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10854-111F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-83+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero83_CNhs13070_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF794WDW ENCSR069JKP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP2 TFDP2 peaks 4 1631 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/8a28e735-f9ef-4b77-80b2-eb6b2d031ed6/ENCFF794WDW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP2 TFDP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR069JKP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF794WDW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF368YGV ENCSR175TRD Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K4me3 peak 4 1631 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/edc03a89-32d6-45c7-b7d0-aefc97e1f42a/ENCFF368YGV.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175TRD Peak\ track wgEncodeReg4Epigenetics_ENCFF368YGV\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero83_CNhs13070_ctss_rev Cl:Mero-83- bigWig mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_reverse 0 1632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-83.CNhs13070.10854-111F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10854-111F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-83-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero83_CNhs13070_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero83_CNhs13070_tpm_rev Cl:Mero-83- bigWig mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_reverse 1 1632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-83.CNhs13070.10854-111F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-83_CNhs13070_10854-111F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10854-111F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-83-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero83_CNhs13070_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10854-111F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF752BRM ENCSR069JKP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP2 TFDP2 ENCSR069JKP signal 2 1632 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/588fd27e-6132-46de-b4e0-e8803cc34f98/ENCFF752BRM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP2 TFDP2 ENCSR069JKP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR069JKP Signal\ track wgEncodeReg4TfChip_ENCFF752BRM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF082LOG ENCSR175TRD Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K4me3 signal 2 1632 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/68e99936-76bf-4aca-b90a-b2cd48bb7643/ENCFF082LOG.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175TRD Signal\ track wgEncodeReg4Epigenetics_ENCFF082LOG\ type bigWig\ visibility full\ MesotheliomaCellLineMero84_CNhs13072_ctss_fwd Cl:Mero-84+ bigWig mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_forward 0 1633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-84.CNhs13072.10855-111F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10855-111F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-84+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero84_CNhs13072_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero84_CNhs13072_tpm_fwd Cl:Mero-84+ bigWig mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_forward 1 1633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-84.CNhs13072.10855-111F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10855-111F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-84+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero84_CNhs13072_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF579QSI ENCSR070HWF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF768 ZNF768 peaks 4 1633 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/8c0f405b-c050-4b7c-9ddb-17990973be84/ENCFF579QSI.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF768 ZNF768 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR070HWF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF579QSI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF896WEY ENCSR175XPY Peak bigBed 5 Colonic mucosa tissue female adult 56 years H3K27ac peak 4 1633 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/9de023bc-a88f-4513-a3aa-a61eed684a35/ENCFF896WEY.bigBed\ color 181,145,0\ longLabel Colonic mucosa tissue female adult 56 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175XPY Peak\ track wgEncodeReg4Epigenetics_ENCFF896WEY\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero84_CNhs13072_ctss_rev Cl:Mero-84- bigWig mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_reverse 0 1634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-84.CNhs13072.10855-111F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10855-111F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-84-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero84_CNhs13072_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero84_CNhs13072_tpm_rev Cl:Mero-84- bigWig mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_reverse 1 1634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-84.CNhs13072.10855-111F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-84_CNhs13072_10855-111F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10855-111F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-84-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero84_CNhs13072_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10855-111F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF194ULQ ENCSR070HWF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF768 ZNF768 ENCSR070HWF signal 2 1634 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/e2f2b23a-8915-4faa-9a3f-f2117540a5e7/ENCFF194ULQ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF768 ZNF768 ENCSR070HWF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR070HWF Signal\ track wgEncodeReg4TfChip_ENCFF194ULQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF220ZKF ENCSR175XPY Signal bigWig Colonic mucosa tissue female adult 56 years H3K27ac signal 2 1634 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/59644786-edd4-47c6-8e6b-f2ebdb7ecd03/ENCFF220ZKF.bigWig\ color 181,145,0\ longLabel Colonic mucosa tissue female adult 56 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR175XPY Signal\ track wgEncodeReg4Epigenetics_ENCFF220ZKF\ type bigWig\ visibility full\ MesotheliomaCellLineMero95_CNhs13073_ctss_fwd Cl:Mero-95+ bigWig mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_forward 0 1635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-95.CNhs13073.10856-111G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10856-111G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-95+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero95_CNhs13073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero95_CNhs13073_tpm_fwd Cl:Mero-95+ bigWig mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_forward 1 1635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-95.CNhs13073.10856-111G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10856-111G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-95+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineMero95_CNhs13073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF291LAG ENCSR071XWO Peak bigBed 5 Gastrocnemius medialis tissue female adult (51 years) CTCF peaks 4 1635 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/623a2031-9cbf-450e-9975-eefebad11c7d/ENCFF291LAG.bigBed\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR071XWO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF291LAG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF330IDS ENCSR176ABZ Peak bigBed 5 HUES6 H3K4me3 peak 4 1635 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/81053ffa-047f-44f5-9454-28760f27f8c0/ENCFF330IDS.bigBed\ color 255,0,0\ longLabel HUES6 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR176ABZ Peak\ track wgEncodeReg4Epigenetics_ENCFF330IDS\ type bigBed 5\ visibility squish\ MesotheliomaCellLineMero95_CNhs13073_ctss_rev Cl:Mero-95- bigWig mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_reverse 0 1636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-95.CNhs13073.10856-111G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10856-111G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mero-95-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero95_CNhs13073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineMero95_CNhs13073_tpm_rev Cl:Mero-95- bigWig mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_reverse 1 1636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aMero-95.CNhs13073.10856-111G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:Mero-95_CNhs13073_10856-111G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10856-111G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mero-95-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineMero95_CNhs13073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10856-111G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF051ANG ENCSR071XWO Signal bigWig Gastrocnemius medialis tissue female adult (51 years) CTCF ENCSR071XWO signal 2 1636 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/c26624c7-cca0-4a30-899b-52a77f3fed46/ENCFF051ANG.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (51 years) CTCF ENCSR071XWO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR071XWO Signal\ track wgEncodeReg4TfChip_ENCFF051ANG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF340BGV ENCSR176ABZ Signal bigWig HUES6 H3K4me3 signal 2 1636 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/7d50671d-651c-489f-9ffc-d3ffb39fdd7e/ENCFF340BGV.bigWig\ color 255,0,0\ longLabel HUES6 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR176ABZ Signal\ track wgEncodeReg4Epigenetics_ENCFF340BGV\ type bigWig\ visibility full\ MyxofibrosarcomaCellLineMFHino_CNhs11729_ctss_fwd Cl:MFH-ino+ bigWig myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_forward 0 1637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aMFH-ino.CNhs11729.10600-108E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10600-108E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MFH-ino+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyxofibrosarcomaCellLineMFHino_CNhs11729_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6\ urlLabel FANTOM5 Details:\ MyxofibrosarcomaCellLineMFHino_CNhs11729_tpm_fwd Cl:MFH-ino+ bigWig myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_forward 1 1637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aMFH-ino.CNhs11729.10600-108E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10600-108E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MFH-ino+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyxofibrosarcomaCellLineMFHino_CNhs11729_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF675TEK ENCSR071YVR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KMT2B KMT2B peaks 4 1637 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/de27ab32-59d9-4cc9-8b04-0e68b8d9ce5d/ENCFF675TEK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KMT2B KMT2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR071YVR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF675TEK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF534NJY ENCSR176BPJ Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 1637 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/c873dfcb-2881-485b-b944-b6624e50f3f2/ENCFF534NJY.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR176BPJ Peak\ track wgEncodeReg4Epigenetics_ENCFF534NJY\ type bigBed 5\ visibility squish\ MyxofibrosarcomaCellLineMFHino_CNhs11729_ctss_rev Cl:MFH-ino- bigWig myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_reverse 0 1638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aMFH-ino.CNhs11729.10600-108E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10600-108E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MFH-ino-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyxofibrosarcomaCellLineMFHino_CNhs11729_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6\ urlLabel FANTOM5 Details:\ MyxofibrosarcomaCellLineMFHino_CNhs11729_tpm_rev Cl:MFH-ino- bigWig myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_reverse 1 1638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aMFH-ino.CNhs11729.10600-108E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel myxofibrosarcoma cell line:MFH-ino_CNhs11729_10600-108E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10600-108E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MFH-ino-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyxofibrosarcomaCellLineMFHino_CNhs11729_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10600-108E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF867SBT ENCSR071YVR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KMT2B KMT2B ENCSR071YVR signal 2 1638 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/9b16d46b-8c18-4220-b5c4-fcf2ccf92ede/ENCFF867SBT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KMT2B KMT2B ENCSR071YVR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR071YVR Signal\ track wgEncodeReg4TfChip_ENCFF867SBT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF803KNZ ENCSR176BPJ Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 1638 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/f51f6aff-4e65-4d22-a2b4-6a86306bdf10/ENCFF803KNZ.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR176BPJ Signal\ track wgEncodeReg4Epigenetics_ENCFF803KNZ\ type bigWig\ visibility full\ DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_ctss_fwd Cl:MIAPaca2+ bigWig ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_forward 0 1639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aMIA%20Paca2.CNhs11259.10488-107B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10488-107B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MIAPaca2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2\ urlLabel FANTOM5 Details:\ DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_tpm_fwd Cl:MIAPaca2+ bigWig ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_forward 1 1639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aMIA%20Paca2.CNhs11259.10488-107B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10488-107B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MIAPaca2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF677WBA ENCSR072EUE Peak bigBed 5 OCI-LY1 CTCF peaks 4 1639 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/10/20/484a6716-dd13-4fbf-8445-7df7d94a6c0f/ENCFF677WBA.bigBed\ labelFields none\ longLabel OCI-LY1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072EUE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF677WBA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF853CPL ENCSR176KYD Peak bigBed 5 Fibroblast of skin of abdomen male embryo 97 days DNase peak 4 1639 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/a5da043b-97c4-4da9-8b3a-6d3276a999ec/ENCFF853CPL.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of skin of abdomen male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR176KYD Peak\ track wgEncodeReg4Epigenetics_ENCFF853CPL\ type bigBed 5\ visibility squish\ DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_ctss_rev Cl:MIAPaca2- bigWig ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_reverse 0 1640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aMIA%20Paca2.CNhs11259.10488-107B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10488-107B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MIAPaca2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2\ urlLabel FANTOM5 Details:\ DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_tpm_rev Cl:MIAPaca2- bigWig ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_reverse 1 1640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductal%20cell%20carcinoma%20cell%20line%3aMIA%20Paca2.CNhs11259.10488-107B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ductal cell carcinoma cell line:MIA Paca2_CNhs11259_10488-107B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10488-107B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MIAPaca2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track DuctalCellCarcinomaCellLineMIAPaca2_CNhs11259_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10488-107B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF231ZBE ENCSR072EUE Signal bigWig OCI-LY1 CTCF ENCSR072EUE signal 2 1640 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a458e7d4-6cfd-4ce9-af3e-081a66471c7c/ENCFF231ZBE.bigWig\ color 2,199,185\ longLabel OCI-LY1 CTCF ENCSR072EUE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072EUE Signal\ track wgEncodeReg4TfChip_ENCFF231ZBE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF113OUE ENCSR176KYD Signal bigWig Fibroblast of skin of abdomen male embryo 97 days DNase signal 2 1640 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ea056507-e2a4-46d4-b1b9-5ccea6139837/ENCFF113OUE.bigWig\ color 6,218,147\ longLabel Fibroblast of skin of abdomen male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR176KYD Signal\ track wgEncodeReg4Epigenetics_ENCFF113OUE\ type bigWig\ visibility full\ MerkelCellCarcinomaCellLineMKL1_CNhs12838_ctss_fwd Cl:MKL-1+ bigWig merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_forward 0 1641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMKL-1.CNhs12838.10843-111E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10843-111E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MerkelCellCarcinomaCellLineMKL1_CNhs12838_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMKL1_CNhs12838_tpm_fwd Cl:MKL-1+ bigWig merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_forward 1 1641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMKL-1.CNhs12838.10843-111E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10843-111E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MerkelCellCarcinomaCellLineMKL1_CNhs12838_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF599VWU ENCSR072GJV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A HMG20A peaks 4 1641 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/5e9ef054-d705-4ee5-97ea-ca4867cd7105/ENCFF599VWU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A HMG20A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072GJV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF599VWU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF131GJA ENCSR177GYC Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase peak 4 1641 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/fa8cbc06-d7cd-4b2d-8bd4-9525bba033cb/ENCFF131GJA.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177GYC Peak\ track wgEncodeReg4Epigenetics_ENCFF131GJA\ type bigBed 5\ visibility squish\ MerkelCellCarcinomaCellLineMKL1_CNhs12838_ctss_rev Cl:MKL-1- bigWig merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_reverse 0 1642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMKL-1.CNhs12838.10843-111E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10843-111E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MerkelCellCarcinomaCellLineMKL1_CNhs12838_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMKL1_CNhs12838_tpm_rev Cl:MKL-1- bigWig merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_reverse 1 1642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMKL-1.CNhs12838.10843-111E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel merkel cell carcinoma cell line:MKL-1_CNhs12838_10843-111E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10843-111E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MerkelCellCarcinomaCellLineMKL1_CNhs12838_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10843-111E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF984WTB ENCSR072GJV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A HMG20A ENCSR072GJV signal 2 1642 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8cc73e1d-b239-4d20-bab1-f1e922aa6cf4/ENCFF984WTB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A HMG20A ENCSR072GJV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072GJV Signal\ track wgEncodeReg4TfChip_ENCFF984WTB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF544VJL ENCSR177GYC Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase signal 2 1642 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/ec5e5131-25d5-46df-b590-654fa1b09086/ENCFF544VJL.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177GYC Signal\ track wgEncodeReg4Epigenetics_ENCFF544VJL\ type bigWig\ visibility full\ GastricAdenocarcinomaCellLineMKN1_CNhs11737_ctss_fwd Cl:MKN1+ bigWig gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_forward 0 1643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN1.CNhs11737.10614-108G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10614-108G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKN1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricAdenocarcinomaCellLineMKN1_CNhs11737_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN1_CNhs11737_tpm_fwd Cl:MKN1+ bigWig gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_forward 1 1643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN1.CNhs11737.10614-108G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10614-108G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricAdenocarcinomaCellLineMKN1_CNhs11737_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF374TCG ENCSR072LQF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF76 ZNF76 peaks 4 1643 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/b5b39b17-1c86-4ae0-8b82-c22947247050/ENCFF374TCG.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF76 ZNF76 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072LQF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF374TCG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF340FNF ENCSR177JWR Peak bigBed 5 Right cardiac atrium tissue female adult 59 years ATAC peak 4 1643 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/a0ba8afa-aadd-4684-8c54-52bb00310d3d/ENCFF340FNF.bigBed\ color 2,199,185\ longLabel Right cardiac atrium tissue female adult 59 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177JWR Peak\ track wgEncodeReg4Epigenetics_ENCFF340FNF\ type bigBed 5\ visibility squish\ GastricAdenocarcinomaCellLineMKN1_CNhs11737_ctss_rev Cl:MKN1- bigWig gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse 0 1644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN1.CNhs11737.10614-108G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10614-108G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKN1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN1_CNhs11737_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN1_CNhs11737_tpm_rev Cl:MKN1- bigWig gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse 1 1644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN1.CNhs11737.10614-108G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN1_CNhs11737_10614-108G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10614-108G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN1_CNhs11737_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10614-108G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF870KNA ENCSR072LQF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF76 ZNF76 ENCSR072LQF signal 2 1644 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/47f84d94-a138-4dd3-9b3c-f8858255c5cc/ENCFF870KNA.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF76 ZNF76 ENCSR072LQF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072LQF Signal\ track wgEncodeReg4TfChip_ENCFF870KNA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF905HWA ENCSR177JWR Signal bigWig Right cardiac atrium tissue female adult 59 years ATAC signal 2 1644 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/7551a5d7-da57-4858-a4f3-23ec6508ebe4/ENCFF905HWA.bigWig\ color 2,199,185\ longLabel Right cardiac atrium tissue female adult 59 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177JWR Signal\ track wgEncodeReg4Epigenetics_ENCFF905HWA\ type bigWig\ visibility full\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_fwd Cl:MKN45+ bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward 0 1645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKN45+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_fwd Cl:MKN45+ bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward 1 1645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN45+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF688STO ENCSR072PWP Peak bigBed 5 GM12878 ZNF24 peaks 4 1645 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/5da6f435-b003-4607-92d0-4f65e37d15a8/ENCFF688STO.bigBed\ labelFields none\ longLabel GM12878 ZNF24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072PWP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF688STO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF148GWQ ENCSR177NIJ Peak bigBed 5 Stomach tissue male adult 37 years DNase peak 4 1645 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/09aef876-6263-4488-8064-07bdc347dfd9/ENCFF148GWQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177NIJ Peak\ track wgEncodeReg4Epigenetics_ENCFF148GWQ\ type bigBed 5\ visibility squish\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_rev Cl:MKN45- bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse 0 1646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKN45-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_rev Cl:MKN45- bigWig gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse 1 1646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gastric%20adenocarcinoma%20cell%20line%3aMKN45.CNhs11819.10612-108F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gastric adenocarcinoma cell line:MKN45_CNhs11819_10612-108F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10612-108F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKN45-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GastricAdenocarcinomaCellLineMKN45_CNhs11819_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10612-108F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF873IIC ENCSR072PWP Signal bigWig GM12878 ZNF24 ENCSR072PWP signal 2 1646 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/48d9e88a-9064-4864-9d71-29d79d772a64/ENCFF873IIC.bigWig\ color 254,75,173\ longLabel GM12878 ZNF24 ENCSR072PWP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072PWP Signal\ track wgEncodeReg4TfChip_ENCFF873IIC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF017QTW ENCSR177NIJ Signal bigWig Stomach tissue male adult 37 years DNase signal 2 1646 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/d52c1db9-6051-4a06-9094-4a2b0a8f74dc/ENCFF017QTW.bigWig\ color 6,218,147\ longLabel Stomach tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177NIJ Signal\ track wgEncodeReg4Epigenetics_ENCFF017QTW\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_fwd Cl:MKPL-1+ bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward 0 1647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKPL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_fwd Cl:MKPL-1+ bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward 1 1647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKPL-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF765XSF ENCSR072VUO Peak bigBed 5 K562 SAFB peaks 4 1647 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d57c2fc1-34ab-49e2-985b-b23105fcfa06/ENCFF765XSF.bigBed\ labelFields none\ longLabel K562 SAFB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072VUO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF765XSF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF489LNG ENCSR177QFY Peak bigBed 5 Adrenal gland tissue male adult 54 years H3K27ac peak 4 1647 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/f429733f-c9ab-4f91-85a0-927e274f6c1f/ENCFF489LNG.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177QFY Peak\ track wgEncodeReg4Epigenetics_ENCFF489LNG\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_rev Cl:MKPL-1- bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse 0 1648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MKPL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_rev Cl:MKPL-1- bigWig acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse 1 1648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M7%29%20cell%20line%3aMKPL-1.CNhs11888.10802-111A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M7) cell line:MKPL-1_CNhs11888_10802-111A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10802-111A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MKPL-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM7CellLineMKPL1_CNhs11888_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10802-111A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF215LQF ENCSR072VUO Signal bigWig K562 SAFB ENCSR072VUO signal 2 1648 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e44cbf25-52e9-4417-a47f-ea0877f699a2/ENCFF215LQF.bigWig\ color 254,75,173\ longLabel K562 SAFB ENCSR072VUO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR072VUO Signal\ track wgEncodeReg4TfChip_ENCFF215LQF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF144JOJ ENCSR177QFY Signal bigWig Adrenal gland tissue male adult 54 years H3K27ac signal 2 1648 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/a4971955-07b5-43bb-9f1e-c07ce693c648/ENCFF144JOJ.bigWig\ color 181,145,0\ longLabel Adrenal gland tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177QFY Signal\ track wgEncodeReg4Epigenetics_ENCFF144JOJ\ type bigWig\ visibility full\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_fwd Cl:MLMA+ bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward 0 1649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MLMA+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_fwd Cl:MLMA+ bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward 1 1649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MLMA+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF851XUX ENCSR073BPG Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (83 years) CTCF peaks 4 1649 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/b2cba4ad-fb44-49d0-a59a-252aa1613e65/ENCFF851XUX.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (83 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR073BPG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF851XUX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF124CPB ENCSR177QXA Signal bigWig Myoepithelial cell of mammary gland female adult 33 years H3K4me3 signal 2 1649 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/410c7892-70f2-4f5a-a3d6-390c8dd3b184/ENCFF124CPB.bigWig\ color 255,0,0\ longLabel Myoepithelial cell of mammary gland female adult 33 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR177QXA Signal\ track wgEncodeReg4Epigenetics_ENCFF124CPB\ type bigWig\ visibility full\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_rev Cl:MLMA- bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse 0 1650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MLMA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_rev Cl:MLMA- bigWig lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse 1 1650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymphoma%2c%20malignant%2c%20hairy%20B-cell%20cell%20line%3aMLMA.CNhs11935.10775-110G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lymphoma, malignant, hairy B-cell cell line:MLMA_CNhs11935_10775-110G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10775-110G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MLMA-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LymphomaMalignantHairyBcellCellLineMLMA_CNhs11935_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10775-110G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF884MZR ENCSR073BPG Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (83 years) CTCF ENCSR073BPG signal 2 1650 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/0c58e1ec-a9ec-4401-846b-301557dff0d4/ENCFF884MZR.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (83 years) CTCF ENCSR073BPG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR073BPG Signal\ track wgEncodeReg4TfChip_ENCFF884MZR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF182YJD ENCSR178JBL Peak bigBed 5 Pancreas tissue male adult 34 years DNase peak 4 1650 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d8d4c428-83b5-4720-aba1-4e199756509d/ENCFF182YJD.bigBed\ color 6,218,147\ labelFields none\ longLabel Pancreas tissue male adult 34 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR178JBL Peak\ track wgEncodeReg4Epigenetics_ENCFF182YJD\ type bigBed 5\ visibility squish\ HairyCellLeukemiaCellLineMo_CNhs11843_ctss_fwd Cl:Mo+ bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward 0 1651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HairyCellLeukemiaCellLineMo_CNhs11843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_tpm_fwd Cl:Mo+ bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward 1 1651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mo+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HairyCellLeukemiaCellLineMo_CNhs11843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF534UGM ENCSR073TPC Peak bigBed 5 Esophagus muscularis mucosa tissue male adult (54 years) CTCF peaks 4 1651 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/bcd1175b-0fdc-487c-8c69-a7afca7feaaa/ENCFF534UGM.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR073TPC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF534UGM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF459FAM ENCSR178JBL Signal bigWig Pancreas tissue male adult 34 years DNase signal 2 1651 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c29ba1a8-e89b-4f72-b550-51f29aa2f4a0/ENCFF459FAM.bigWig\ color 6,218,147\ longLabel Pancreas tissue male adult 34 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR178JBL Signal\ track wgEncodeReg4Epigenetics_ENCFF459FAM\ type bigWig\ visibility full\ HairyCellLeukemiaCellLineMo_CNhs11843_ctss_rev Cl:Mo- bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse 0 1652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Mo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HairyCellLeukemiaCellLineMo_CNhs11843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ HairyCellLeukemiaCellLineMo_CNhs11843_tpm_rev Cl:Mo- bigWig hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse 1 1652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hairy%20cell%20leukemia%20cell%20line%3aMo.CNhs11843.10712-109I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hairy cell leukemia cell line:Mo_CNhs11843_10712-109I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10712-109I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Mo-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HairyCellLeukemiaCellLineMo_CNhs11843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10712-109I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF648LZP ENCSR073TPC Signal bigWig Esophagus muscularis mucosa tissue male adult (54 years) CTCF ENCSR073TPC signal 2 1652 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e958762b-1bd8-4468-90e9-90e91f83aad4/ENCFF648LZP.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (54 years) CTCF ENCSR073TPC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR073TPC Signal\ track wgEncodeReg4TfChip_ENCFF648LZP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF002TBW ENCSR178KWE Peak bigBed 5 Heart right ventricle tissue male adult 43 years H3K4me3 peak 4 1652 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/261a096e-faac-4c13-a037-7463f9198fe0/ENCFF002TBW.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 43 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR178KWE Peak\ track wgEncodeReg4Epigenetics_ENCFF002TBW\ type bigBed 5\ visibility squish\ MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_fwd Cl:MS-1+ bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward 0 1653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_fwd Cl:MS-1+ bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward 1 1653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MS-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF182PYY ENCSR074SFL Peak bigBed 5 Esophagus muscularis mucosa tissue female adult (53 years) CTCF peaks 4 1653 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1d55968a-7d5d-4326-ad03-5f00b6ff57d2/ENCFF182PYY.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR074SFL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF182PYY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF454ERF ENCSR178KWE Signal bigWig Heart right ventricle tissue male adult 43 years H3K4me3 signal 2 1653 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/fbb65653-d912-42f1-917a-c7341935ce40/ENCFF454ERF.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 43 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR178KWE Signal\ track wgEncodeReg4Epigenetics_ENCFF454ERF\ type bigWig\ visibility full\ MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_rev Cl:MS-1- bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse 0 1654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_rev Cl:MS-1- bigWig merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse 1 1654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/merkel%20cell%20carcinoma%20cell%20line%3aMS-1.CNhs12839.10844-111E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel merkel cell carcinoma cell line:MS-1_CNhs12839_10844-111E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10844-111E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MS-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MerkelCellCarcinomaCellLineMS1_CNhs12839_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10844-111E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF534LXF ENCSR074SFL Signal bigWig Esophagus muscularis mucosa tissue female adult (53 years) CTCF ENCSR074SFL signal 2 1654 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a9bd8ff9-c7f6-4ee3-87d5-771f682ca907/ENCFF534LXF.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) CTCF ENCSR074SFL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR074SFL Signal\ track wgEncodeReg4TfChip_ENCFF534LXF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF494GBK ENCSR178NOK Peak bigBed 5 Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K4me3 peak 4 1654 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/74ff70f9-a869-430d-91bc-11193c7cdd83/ENCFF494GBK.bigBed\ color 255,0,0\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR178NOK Peak\ track wgEncodeReg4Epigenetics_ENCFF494GBK\ type bigBed 5\ visibility squish\ BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_ctss_fwd Cl:MV-4-11+ bigWig biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward 0 1655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/biphenotypic%20B%20myelomonocytic%20leukemia%20cell%20line%3aMV-4-11.CNhs11845.10718-109I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10718-109I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MV-4-11+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7\ urlLabel FANTOM5 Details:\ BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_tpm_fwd Cl:MV-4-11+ bigWig biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward 1 1655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/biphenotypic%20B%20myelomonocytic%20leukemia%20cell%20line%3aMV-4-11.CNhs11845.10718-109I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10718-109I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MV-4-11+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF945EXF ENCSR075BAS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17 ZNF17 peaks 4 1655 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/00c8f60c-cc0a-4878-8c51-4acbf06850b3/ENCFF945EXF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17 ZNF17 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR075BAS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF945EXF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF746DNB ENCSR178NOK Signal bigWig Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K4me3 signal 2 1655 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/c6e863f3-88be-4b0b-8002-4fce4bd48616/ENCFF746DNB.bigWig\ color 255,0,0\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR178NOK Signal\ track wgEncodeReg4Epigenetics_ENCFF746DNB\ type bigWig\ visibility full\ BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_ctss_rev Cl:MV-4-11- bigWig biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_reverse 0 1656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/biphenotypic%20B%20myelomonocytic%20leukemia%20cell%20line%3aMV-4-11.CNhs11845.10718-109I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10718-109I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:MV-4-11-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7\ urlLabel FANTOM5 Details:\ BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_tpm_rev Cl:MV-4-11- bigWig biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_reverse 1 1656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/biphenotypic%20B%20myelomonocytic%20leukemia%20cell%20line%3aMV-4-11.CNhs11845.10718-109I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel biphenotypic B myelomonocytic leukemia cell line:MV-4-11_CNhs11845_10718-109I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10718-109I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:MV-4-11-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BiphenotypicBMyelomonocyticLeukemiaCellLineMV411_CNhs11845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10718-109I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF069ALI ENCSR075BAS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17 ZNF17 ENCSR075BAS signal 2 1656 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d44775c4-2a62-4371-b1b3-0d8b3c782323/ENCFF069ALI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF17 ZNF17 ENCSR075BAS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR075BAS Signal\ track wgEncodeReg4TfChip_ENCFF069ALI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF326WIA ENCSR179CDH Peak bigBed 5 Trophoblast cell originated from H1 DNase peak 4 1656 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/d43ab327-67cd-448e-a06e-455d6efcb7d0/ENCFF326WIA.bigBed\ color 6,218,147\ labelFields none\ longLabel Trophoblast cell originated from H1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR179CDH Peak\ track wgEncodeReg4Epigenetics_ENCFF326WIA\ type bigBed 5\ visibility squish\ AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_ctss_fwd Cl:NALM-6+ bigWig acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_forward 0 1657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aNALM-6.CNhs11282.10534-107G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10534-107G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NALM-6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_fwd Cl:NALM-6+ bigWig acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_forward 1 1657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aNALM-6.CNhs11282.10534-107G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10534-107G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NALM-6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF919OMP ENCSR075HTM Peak bigBed 5 K562 HDAC2 peaks 4 1657 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/4d858d76-b1fb-475d-9d33-6264d62a769c/ENCFF919OMP.bigBed\ labelFields none\ longLabel K562 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR075HTM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF919OMP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF843JKM ENCSR179CDH Signal bigWig Trophoblast cell originated from H1 DNase signal 2 1657 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/e7d4b51f-2385-49ed-b70e-efbf4490450e/ENCFF843JKM.bigWig\ color 6,218,147\ longLabel Trophoblast cell originated from H1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR179CDH Signal\ track wgEncodeReg4Epigenetics_ENCFF843JKM\ type bigWig\ visibility full\ AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_ctss_rev Cl:NALM-6- bigWig acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_reverse 0 1658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aNALM-6.CNhs11282.10534-107G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10534-107G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NALM-6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3\ urlLabel FANTOM5 Details:\ AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_rev Cl:NALM-6- bigWig acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_reverse 1 1658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20lymphoblastic%20leukemia%20%28B-ALL%29%20cell%20line%3aNALM-6.CNhs11282.10534-107G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute lymphoblastic leukemia (B-ALL) cell line:NALM-6_CNhs11282_10534-107G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10534-107G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NALM-6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteLymphoblasticLeukemiaBALLCellLineNALM6_CNhs11282_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10534-107G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF954LGE ENCSR075HTM Signal bigWig K562 HDAC2 ENCSR075HTM signal 2 1658 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/cb5e553d-8672-46b2-8a09-bbf57acd80a4/ENCFF954LGE.bigWig\ color 254,75,173\ longLabel K562 HDAC2 ENCSR075HTM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR075HTM Signal\ track wgEncodeReg4TfChip_ENCFF954LGE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF351NMS ENCSR179IAC Peak bigBed 5 K562 treated with 5 μM JQ1 for 48 hours ATAC peak 4 1658 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/559fdab0-36d6-42bf-b318-ae187edbe8ce/ENCFF351NMS.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM JQ1 for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR179IAC Peak\ track wgEncodeReg4Epigenetics_ENCFF351NMS\ type bigBed 5\ visibility squish\ NeuroblastomaCellLineNB1_CNhs11284_ctss_fwd Cl:NB-1+ bigWig neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_forward 0 1659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNB-1.CNhs11284.10539-107G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10539-107G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NB-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineNB1_CNhs11284_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNB1_CNhs11284_tpm_fwd Cl:NB-1+ bigWig neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_forward 1 1659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNB-1.CNhs11284.10539-107G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10539-107G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NB-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineNB1_CNhs11284_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF500HTT ENCSR075PWK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225 ZNF225 peaks 4 1659 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/17f6c6e2-3eaf-485b-a16d-8b0fecb534cc/ENCFF500HTT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225 ZNF225 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR075PWK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF500HTT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF706FMW ENCSR179IAC Signal bigWig K562 treated with 5 μM JQ1 for 48 hours ATAC signal 2 1659 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/ab1e7508-2294-4cbd-a249-c0b43d9d8555/ENCFF706FMW.bigWig\ color 2,199,185\ longLabel K562 treated with 5 μM JQ1 for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR179IAC Signal\ track wgEncodeReg4Epigenetics_ENCFF706FMW\ type bigWig\ visibility full\ NeuroblastomaCellLineNB1_CNhs11284_ctss_rev Cl:NB-1- bigWig neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_reverse 0 1660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNB-1.CNhs11284.10539-107G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10539-107G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NB-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNB1_CNhs11284_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNB1_CNhs11284_tpm_rev Cl:NB-1- bigWig neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_reverse 1 1660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNB-1.CNhs11284.10539-107G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NB-1_CNhs11284_10539-107G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10539-107G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NB-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNB1_CNhs11284_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10539-107G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF502SOA ENCSR075PWK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225 ZNF225 ENCSR075PWK signal 2 1660 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/0233b880-0290-47fb-87a3-d5724e0e14b3/ENCFF502SOA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF225 ZNF225 ENCSR075PWK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR075PWK Signal\ track wgEncodeReg4TfChip_ENCFF502SOA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF575VHJ ENCSR180HEL Peak bigBed 5 HG02678 ATAC peak 4 1660 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/bc6111a3-be95-4e2b-8ab9-38f2dba99fc2/ENCFF575VHJ.bigBed\ color 2,199,185\ longLabel HG02678 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180HEL Peak\ track wgEncodeReg4Epigenetics_ENCFF575VHJ\ type bigBed 5\ visibility squish\ NeuroblastomaCellLineNBsusSR_CNhs11818_ctss_fwd Cl:NBsusSR+ bigWig neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_forward 0 1661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNBsusSR.CNhs11818.10607-108F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10607-108F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NBsusSR+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineNBsusSR_CNhs11818_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNBsusSR_CNhs11818_tpm_fwd Cl:NBsusSR+ bigWig neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_forward 1 1661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNBsusSR.CNhs11818.10607-108F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10607-108F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NBsusSR+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineNBsusSR_CNhs11818_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF588INF ENCSR076EZB Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF9 KLF9 peaks 4 1661 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/fda1a7b7-a838-4044-9b4a-be8a10e6b80b/ENCFF588INF.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF9 KLF9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076EZB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF588INF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF809SRH ENCSR180HEL Signal bigWig HG02678 ATAC signal 2 1661 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/904ff5ff-285e-449c-bb6a-9d74d6739abd/ENCFF809SRH.bigWig\ color 2,199,185\ longLabel HG02678 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180HEL Signal\ track wgEncodeReg4Epigenetics_ENCFF809SRH\ type bigWig\ visibility full\ NeuroblastomaCellLineNBsusSR_CNhs11818_ctss_rev Cl:NBsusSR- bigWig neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_reverse 0 1662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNBsusSR.CNhs11818.10607-108F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10607-108F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NBsusSR-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNBsusSR_CNhs11818_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNBsusSR_CNhs11818_tpm_rev Cl:NBsusSR- bigWig neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_reverse 1 1662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNBsusSR.CNhs11818.10607-108F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NBsusSR_CNhs11818_10607-108F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10607-108F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NBsusSR-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNBsusSR_CNhs11818_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10607-108F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF371NRE ENCSR076EZB Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF9 KLF9 ENCSR076EZB signal 2 1662 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/8c7ef289-ba5f-49cd-b997-0dc2e1639fcf/ENCFF371NRE.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF9 KLF9 ENCSR076EZB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076EZB Signal\ track wgEncodeReg4TfChip_ENCFF371NRE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF345ZWX ENCSR180IJO Peak bigBed 5 K562 treated with 1 μM AR-42 for 48 hours ATAC peak 4 1662 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/3ceb3b46-4592-499e-b67c-f404e34fbba2/ENCFF345ZWX.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180IJO Peak\ track wgEncodeReg4Epigenetics_ENCFF345ZWX\ type bigBed 5\ visibility squish\ TeratocarcinomaCellLineNCCITA3_CNhs11878_ctss_fwd Cl:NCC-IT-A3+ bigWig teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_forward 0 1663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCC-IT-A3.CNhs11878.10790-110H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10790-110H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCC-IT-A3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLineNCCITA3_CNhs11878_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCCITA3_CNhs11878_tpm_fwd Cl:NCC-IT-A3+ bigWig teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_forward 1 1663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCC-IT-A3.CNhs11878.10790-110H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10790-110H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCC-IT-A3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLineNCCITA3_CNhs11878_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF431WQQ ENCSR076KLJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276 ZNF276 peaks 4 1663 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/b1e25faf-e6cf-47d7-9081-4d85004bcc8a/ENCFF431WQQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276 ZNF276 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076KLJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF431WQQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF414GDD ENCSR180IJO Signal bigWig K562 treated with 1 μM AR-42 for 48 hours ATAC signal 2 1663 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/5cf69e4f-a436-4992-9960-0cc3ddb8b450/ENCFF414GDD.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180IJO Signal\ track wgEncodeReg4Epigenetics_ENCFF414GDD\ type bigWig\ visibility full\ TeratocarcinomaCellLineNCCITA3_CNhs11878_ctss_rev Cl:NCC-IT-A3- bigWig teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_reverse 0 1664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCC-IT-A3.CNhs11878.10790-110H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10790-110H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCC-IT-A3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLineNCCITA3_CNhs11878_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCCITA3_CNhs11878_tpm_rev Cl:NCC-IT-A3- bigWig teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_reverse 1 1664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCC-IT-A3.CNhs11878.10790-110H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:NCC-IT-A3_CNhs11878_10790-110H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10790-110H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCC-IT-A3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLineNCCITA3_CNhs11878_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10790-110H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF425VIQ ENCSR076KLJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276 ZNF276 ENCSR076KLJ signal 2 1664 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/8c305b50-d544-43f4-bc18-2a4a24cf8e12/ENCFF425VIQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF276 ZNF276 ENCSR076KLJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076KLJ Signal\ track wgEncodeReg4TfChip_ENCFF425VIQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF104LYA ENCSR180KMR Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase peak 4 1664 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/b426bee5-b9fb-485d-86e2-b3f118ae4330/ENCFF104LYA.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180KMR Peak\ track wgEncodeReg4Epigenetics_ENCFF104LYA\ type bigBed 5\ visibility squish\ CarcinoidCellLineNCIH1770_CNhs11834_ctss_fwd Cl:NCI-H1770+ bigWig carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_forward 0 1665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H1770.CNhs11834.10703-109H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10703-109H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H1770+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineNCIH1770_CNhs11834_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1\ urlLabel FANTOM5 Details:\ CarcinoidCellLineNCIH1770_CNhs11834_tpm_fwd Cl:NCI-H1770+ bigWig carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_forward 1 1665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H1770.CNhs11834.10703-109H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10703-109H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H1770+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineNCIH1770_CNhs11834_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF533NSU ENCSR076SHT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GPN1 GPN1 peaks 4 1665 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/14b540ca-a4cf-424a-a000-df4e1d31c5c7/ENCFF533NSU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GPN1 GPN1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076SHT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF533NSU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF848AKF ENCSR180KMR Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase signal 2 1665 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/aae1d980-5885-49bf-92ea-3dfea64d53f9/ENCFF848AKF.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180KMR Signal\ track wgEncodeReg4Epigenetics_ENCFF848AKF\ type bigWig\ visibility full\ CarcinoidCellLineNCIH1770_CNhs11834_ctss_rev Cl:NCI-H1770- bigWig carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_reverse 0 1666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H1770.CNhs11834.10703-109H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10703-109H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H1770-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineNCIH1770_CNhs11834_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1\ urlLabel FANTOM5 Details:\ CarcinoidCellLineNCIH1770_CNhs11834_tpm_rev Cl:NCI-H1770- bigWig carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_reverse 1 1666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H1770.CNhs11834.10703-109H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:NCI-H1770_CNhs11834_10703-109H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10703-109H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H1770-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineNCIH1770_CNhs11834_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10703-109H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF020TBH ENCSR076SHT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GPN1 GPN1 ENCSR076SHT signal 2 1666 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/dca8e2a7-7639-44b2-beea-c1100a7c5eab/ENCFF020TBH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GPN1 GPN1 ENCSR076SHT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076SHT Signal\ track wgEncodeReg4TfChip_ENCFF020TBH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF693PTF ENCSR180NCM Peak bigBed 5 Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 1666 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/eb770ca1-05a3-4c8a-a50f-2caa2a9e8fb0/ENCFF693PTF.bigBed\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180NCM Peak\ track wgEncodeReg4Epigenetics_ENCFF693PTF\ type bigBed 5\ visibility squish\ MesotheliomaCellLineNCIH2052_CNhs13063_ctss_fwd Cl:NCI-H2052+ bigWig mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_forward 0 1667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2052.CNhs13063.10847-111F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10847-111F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H2052+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH2052_CNhs13063_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH2052_CNhs13063_tpm_fwd Cl:NCI-H2052+ bigWig mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_forward 1 1667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2052.CNhs13063.10847-111F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10847-111F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H2052+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH2052_CNhs13063_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF560VPN ENCSR076STQ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB44 ZBTB44 peaks 4 1667 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/bd2977c5-d0be-43c2-9ae2-fa023b838c16/ENCFF560VPN.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB44 ZBTB44 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076STQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF560VPN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF291NFC ENCSR180NCM Signal bigWig Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 1667 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/17208406-f824-4335-8550-d76d5cafc36c/ENCFF291NFC.bigWig\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR180NCM Signal\ track wgEncodeReg4Epigenetics_ENCFF291NFC\ type bigWig\ visibility full\ MesotheliomaCellLineNCIH2052_CNhs13063_ctss_rev Cl:NCI-H2052- bigWig mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_reverse 0 1668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2052.CNhs13063.10847-111F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10847-111F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H2052-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH2052_CNhs13063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH2052_CNhs13063_tpm_rev Cl:NCI-H2052- bigWig mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_reverse 1 1668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2052.CNhs13063.10847-111F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H2052_CNhs13063_10847-111F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10847-111F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H2052-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH2052_CNhs13063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10847-111F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF185JZD ENCSR076STQ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB44 ZBTB44 ENCSR076STQ signal 2 1668 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/5c9d2473-6925-42ee-b20b-fc0d1c13d02a/ENCFF185JZD.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB44 ZBTB44 ENCSR076STQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076STQ Signal\ track wgEncodeReg4TfChip_ENCFF185JZD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF304IZE ENCSR181ATL Peak bigBed 5 Heart left ventricle tissue female adult 51 years H3K4me3 peak 4 1668 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/47bc7f7c-fa63-43e6-beef-5c60a1a02675/ENCFF304IZE.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR181ATL Peak\ track wgEncodeReg4Epigenetics_ENCFF304IZE\ type bigBed 5\ visibility squish\ MesotheliomaCellLineNCIH226_CNhs13062_ctss_fwd Cl:NCI-H226+ bigWig mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_forward 0 1669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H226.CNhs13062.10846-111E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10846-111E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H226+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH226_CNhs13062_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH226_CNhs13062_tpm_fwd Cl:NCI-H226+ bigWig mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_forward 1 1669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H226.CNhs13062.10846-111E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10846-111E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H226+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH226_CNhs13062_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF061ATI ENCSR076YPO Peak bigBed 5 K562 RNF2 peaks 4 1669 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a99a83c4-2d0e-415e-9098-2aab78844c8b/ENCFF061ATI.bigBed\ labelFields none\ longLabel K562 RNF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076YPO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF061ATI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF720HFS ENCSR181ATL Signal bigWig Heart left ventricle tissue female adult 51 years H3K4me3 signal 2 1669 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/230d4353-1e20-4e2a-b7b4-243dccc0efc0/ENCFF720HFS.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR181ATL Signal\ track wgEncodeReg4Epigenetics_ENCFF720HFS\ type bigWig\ visibility full\ MesotheliomaCellLineNCIH226_CNhs13062_ctss_rev Cl:NCI-H226- bigWig mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_reverse 0 1670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H226.CNhs13062.10846-111E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10846-111E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H226-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH226_CNhs13062_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH226_CNhs13062_tpm_rev Cl:NCI-H226- bigWig mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_reverse 1 1670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H226.CNhs13062.10846-111E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H226_CNhs13062_10846-111E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10846-111E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H226-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH226_CNhs13062_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10846-111E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF306PNK ENCSR076YPO Signal bigWig K562 RNF2 ENCSR076YPO signal 2 1670 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8fa5b08e-1dec-4d43-a7eb-fca449fee850/ENCFF306PNK.bigWig\ color 254,75,173\ longLabel K562 RNF2 ENCSR076YPO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR076YPO Signal\ track wgEncodeReg4TfChip_ENCFF306PNK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF979MID ENCSR181OGW Peak bigBed 5 Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase peak 4 1670 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/153382ea-78da-4ae4-b591-f270444a59eb/ENCFF979MID.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR181OGW Peak\ track wgEncodeReg4Epigenetics_ENCFF979MID\ type bigBed 5\ visibility squish\ MesotheliomaCellLineNCIH2452_CNhs13064_ctss_fwd Cl:NCI-H2452+ bigWig mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_forward 0 1671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2452.CNhs13064.10848-111F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10848-111F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H2452+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH2452_CNhs13064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH2452_CNhs13064_tpm_fwd Cl:NCI-H2452+ bigWig mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_forward 1 1671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2452.CNhs13064.10848-111F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10848-111F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H2452+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH2452_CNhs13064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF180STA ENCSR077DKV Peak bigBed 5 K562 CREM peaks 4 1671 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/91a85f0c-da10-4afd-81d3-fcbcb567979c/ENCFF180STA.bigBed\ labelFields none\ longLabel K562 CREM peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR077DKV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF180STA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF176YTF ENCSR181OGW Signal bigWig Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase signal 2 1671 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/7bcbc67b-6eb6-485e-b71f-3881dd041776/ENCFF176YTF.bigWig\ color 6,218,147\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR181OGW Signal\ track wgEncodeReg4Epigenetics_ENCFF176YTF\ type bigWig\ visibility full\ MesotheliomaCellLineNCIH2452_CNhs13064_ctss_rev Cl:NCI-H2452- bigWig mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_reverse 0 1672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2452.CNhs13064.10848-111F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10848-111F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H2452-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH2452_CNhs13064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH2452_CNhs13064_tpm_rev Cl:NCI-H2452- bigWig mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_reverse 1 1672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H2452.CNhs13064.10848-111F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H2452_CNhs13064_10848-111F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10848-111F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H2452-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH2452_CNhs13064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10848-111F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF242MQX ENCSR077DKV Signal bigWig K562 CREM ENCSR077DKV signal 2 1672 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/cdda6883-34f7-417a-8549-41a6d5340512/ENCFF242MQX.bigWig\ color 254,75,173\ longLabel K562 CREM ENCSR077DKV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR077DKV Signal\ track wgEncodeReg4TfChip_ENCFF242MQX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF838MCR ENCSR181OHF Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 1672 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/cfe3c7fb-ec9d-447c-af37-341d09576094/ENCFF838MCR.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR181OHF Peak\ track wgEncodeReg4Epigenetics_ENCFF838MCR\ type bigBed 5\ visibility squish\ MesotheliomaCellLineNCIH28_CNhs13061_ctss_fwd Cl:NCI-H28+ bigWig mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_forward 0 1673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H28.CNhs13061.10845-111E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10845-111E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H28+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH28_CNhs13061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH28_CNhs13061_tpm_fwd Cl:NCI-H28+ bigWig mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_forward 1 1673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H28.CNhs13061.10845-111E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10845-111E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H28+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNCIH28_CNhs13061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF243WRW ENCSR077TKJ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707 ZNF707 peaks 4 1673 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/22/00c8e629-5591-4746-9995-cc79d9aae1be/ENCFF243WRW.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707 ZNF707 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR077TKJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF243WRW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF798XFR ENCSR181OHF Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 1673 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/a4280fba-fb56-486e-8fbc-6c0bf8b58938/ENCFF798XFR.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR181OHF Signal\ track wgEncodeReg4Epigenetics_ENCFF798XFR\ type bigWig\ visibility full\ MesotheliomaCellLineNCIH28_CNhs13061_ctss_rev Cl:NCI-H28- bigWig mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_reverse 0 1674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H28.CNhs13061.10845-111E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10845-111E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H28-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH28_CNhs13061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNCIH28_CNhs13061_tpm_rev Cl:NCI-H28- bigWig mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_reverse 1 1674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNCI-H28.CNhs13061.10845-111E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:NCI-H28_CNhs13061_10845-111E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10845-111E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H28-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNCIH28_CNhs13061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10845-111E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF279CMY ENCSR079YAP Peak bigBed 5 Tibial artery tissue male adult (37 years) CTCF peaks 4 1674 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1624fc5c-6c22-42bc-85c3-938279e8d6b7/ENCFF279CMY.bigBed\ labelFields none\ longLabel Tibial artery tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR079YAP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF279CMY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF649PQC ENCSR182EZJ Peak bigBed 5 SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours ATAC peak 4 1674 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/4764a888-c1a0-4f4c-bee9-848825b7297d/ENCFF649PQC.bigBed\ color 2,199,185\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR182EZJ Peak\ track wgEncodeReg4Epigenetics_ENCFF649PQC\ type bigBed 5\ visibility squish\ BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_ctss_fwd Cl:NCI-H358+ bigWig bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_forward 0 1675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H358.CNhs11840.10709-109H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10709-109H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H358+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7\ urlLabel FANTOM5 Details:\ BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_tpm_fwd Cl:NCI-H358+ bigWig bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_forward 1 1675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H358.CNhs11840.10709-109H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10709-109H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H358+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF500RDL ENCSR079YAP Signal bigWig Tibial artery tissue male adult (37 years) CTCF ENCSR079YAP signal 2 1675 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/b8d0ea74-4b55-4625-9925-40e7047241ce/ENCFF500RDL.bigWig\ color 255,37,41\ longLabel Tibial artery tissue male adult (37 years) CTCF ENCSR079YAP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR079YAP Signal\ track wgEncodeReg4TfChip_ENCFF500RDL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF938ZLY ENCSR182EZJ Signal bigWig SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours ATAC signal 2 1675 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/c80d416c-6621-4d9b-8ad4-6cc85a427a39/ENCFF938ZLY.bigWig\ color 2,199,185\ longLabel SK-N-SH treated with 6 μM all-trans-retinoic acid for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR182EZJ Signal\ track wgEncodeReg4Epigenetics_ENCFF938ZLY\ type bigWig\ visibility full\ BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_ctss_rev Cl:NCI-H358- bigWig bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_reverse 0 1676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H358.CNhs11840.10709-109H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10709-109H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H358-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7\ urlLabel FANTOM5 Details:\ BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_tpm_rev Cl:NCI-H358- bigWig bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_reverse 1 1676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H358.CNhs11840.10709-109H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bronchioalveolar carcinoma cell line:NCI-H358_CNhs11840_10709-109H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10709-109H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H358-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchioalveolarCarcinomaCellLineNCIH358_CNhs11840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10709-109H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF971ZNH ENCSR080CST Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF639 ZNF639 peaks 4 1676 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/2c81fcd0-58d9-458f-bdd2-cb1fbc9b4827/ENCFF971ZNH.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF639 ZNF639 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR080CST Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF971ZNH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF274EPZ ENCSR182JAI Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak 4 1676 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/2df04ec4-1071-4af4-8fa2-4415d85338c2/ENCFF274EPZ.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR182JAI Peak\ track wgEncodeReg4Epigenetics_ENCFF274EPZ\ type bigBed 5\ visibility squish\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_fwd Cl:NCI-H441+ bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward 0 1677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H441+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_fwd Cl:NCI-H441+ bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward 1 1677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H441+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF102RYE ENCSR080CST Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF639 ZNF639 ENCSR080CST signal 2 1677 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/f56d5178-c83e-43bf-b713-4d7897d823ae/ENCFF102RYE.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF639 ZNF639 ENCSR080CST signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR080CST Signal\ track wgEncodeReg4TfChip_ENCFF102RYE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF430RJE ENCSR182JAI Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal 2 1677 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/b979907e-3344-4548-a294-da50ad7f04eb/ENCFF430RJE.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR182JAI Signal\ track wgEncodeReg4Epigenetics_ENCFF430RJE\ type bigWig\ visibility full\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_rev Cl:NCI-H441- bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse 0 1678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H441-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_rev Cl:NCI-H441- bigWig lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse 1 1678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%2c%20papillary%20cell%20line%3aNCI-H441.CNhs14245.10742-110C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma, papillary cell line:NCI-H441_CNhs14245_10742-110C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10742-110C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H441-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaPapillaryCellLineNCIH441_CNhs14245_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10742-110C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF658YIR ENCSR080UEM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 peaks 4 1678 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/8c837147-a05f-4f1b-97bf-4cdc5c2b33d4/ENCFF658YIR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR080UEM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF658YIR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF260HDA ENCSR183IQU Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 1678 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/cea47b86-c2e6-40f1-8cc4-76a407fc397f/ENCFF260HDA.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR183IQU Peak\ track wgEncodeReg4Epigenetics_ENCFF260HDA\ type bigBed 5\ visibility squish\ LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_ctss_fwd Cl:NCI-H460+ bigWig large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_forward 0 1679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H460.CNhs12806.10839-111E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10839-111E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H460+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2\ urlLabel FANTOM5 Details:\ LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_tpm_fwd Cl:NCI-H460+ bigWig large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_forward 1 1679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H460.CNhs12806.10839-111E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10839-111E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H460+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF228VTX ENCSR080UEM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 ENCSR080UEM signal 2 1679 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/947f2342-9d46-4880-a985-324b9bf97ccc/ENCFF228VTX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 ENCSR080UEM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR080UEM Signal\ track wgEncodeReg4TfChip_ENCFF228VTX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF267TXG ENCSR183IQU Signal bigWig CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 1679 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/44b34766-0222-40d5-85ed-b742f3b8dec5/ENCFF267TXG.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR183IQU Signal\ track wgEncodeReg4Epigenetics_ENCFF267TXG\ type bigWig\ visibility full\ LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_ctss_rev Cl:NCI-H460- bigWig large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_reverse 0 1680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H460.CNhs12806.10839-111E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10839-111E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H460-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2\ urlLabel FANTOM5 Details:\ LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_tpm_rev Cl:NCI-H460- bigWig large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_reverse 1 1680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H460.CNhs12806.10839-111E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel large cell lung carcinoma cell line:NCI-H460_CNhs12806_10839-111E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10839-111E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H460-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LargeCellLungCarcinomaCellLineNCIH460_CNhs12806_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10839-111E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF888VJF ENCSR080XEY Peak bigBed 5 Liver tissue female child (4 years) FOXA2 peaks 4 1680 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/3002143a-9463-4292-8e77-ea1b7239d4ff/ENCFF888VJF.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) FOXA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR080XEY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF888VJF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF407CDU ENCSR184DFF Peak bigBed 5 Left kidney tissue male embryo 96 days DNase peak 4 1680 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/9f963220-5b76-4dc2-85ca-b7ec9cdb81f8/ENCFF407CDU.bigBed\ color 6,218,147\ labelFields none\ longLabel Left kidney tissue male embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR184DFF Peak\ track wgEncodeReg4Epigenetics_ENCFF407CDU\ type bigBed 5\ visibility squish\ BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_ctss_fwd Cl:NCI-H650+ bigWig bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_forward 0 1681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H650.CNhs14138.10715-109I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10715-109I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H650+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4\ urlLabel FANTOM5 Details:\ BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_tpm_fwd Cl:NCI-H650+ bigWig bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_forward 1 1681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H650.CNhs14138.10715-109I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10715-109I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H650+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF132KFG ENCSR080XEY Signal bigWig Liver tissue female child (4 years) FOXA2 ENCSR080XEY signal 2 1681 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/6880bd1c-2c49-407c-99d7-a5ce622127cc/ENCFF132KFG.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) FOXA2 ENCSR080XEY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR080XEY Signal\ track wgEncodeReg4TfChip_ENCFF132KFG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF821MFF ENCSR184DFF Signal bigWig Left kidney tissue male embryo 96 days DNase signal 2 1681 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/344193c4-f9be-4ef3-b6f6-b8ade6b0e439/ENCFF821MFF.bigWig\ color 6,218,147\ longLabel Left kidney tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR184DFF Signal\ track wgEncodeReg4Epigenetics_ENCFF821MFF\ type bigWig\ visibility full\ BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_ctss_rev Cl:NCI-H650- bigWig bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_reverse 0 1682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H650.CNhs14138.10715-109I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10715-109I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H650-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4\ urlLabel FANTOM5 Details:\ BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_tpm_rev Cl:NCI-H650- bigWig bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_reverse 1 1682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bronchioalveolar%20carcinoma%20cell%20line%3aNCI-H650.CNhs14138.10715-109I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bronchioalveolar carcinoma cell line:NCI-H650_CNhs14138_10715-109I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10715-109I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H650-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BronchioalveolarCarcinomaCellLineNCIH650_CNhs14138_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10715-109I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF188FEZ ENCSR081WLS Peak bigBed 5 HepG2 RAD51 peaks 4 1682 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/11f58f64-7554-400e-8af3-bdb054dcf6ea/ENCFF188FEZ.bigBed\ labelFields none\ longLabel HepG2 RAD51 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR081WLS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF188FEZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF783KAK ENCSR184LMY Peak bigBed 5 Fibroblast of skin of back male embryo 97 days DNase peak 4 1682 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/9cbe0efd-a59f-4647-82ed-51940aa9df0b/ENCFF783KAK.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of skin of back male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR184LMY Peak\ track wgEncodeReg4Epigenetics_ENCFF783KAK\ type bigBed 5\ visibility squish\ CarcinoidCellLineNCIH727_CNhs14244_ctss_fwd Cl:NCI-H727+ bigWig carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_forward 0 1683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H727.CNhs14244.10735-110B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10735-110B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H727+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineNCIH727_CNhs14244_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ CarcinoidCellLineNCIH727_CNhs14244_tpm_fwd Cl:NCI-H727+ bigWig carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_forward 1 1683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H727.CNhs14244.10735-110B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10735-110B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H727+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineNCIH727_CNhs14244_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF628FMT ENCSR081WLS Signal bigWig HepG2 RAD51 ENCSR081WLS signal 2 1683 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/d37ab72a-97c1-4f4e-a61b-7883a0a07843/ENCFF628FMT.bigWig\ color 137,152,82\ longLabel HepG2 RAD51 ENCSR081WLS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR081WLS Signal\ track wgEncodeReg4TfChip_ENCFF628FMT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF779UTQ ENCSR184LMY Signal bigWig Fibroblast of skin of back male embryo 97 days DNase signal 2 1683 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/a8d828d6-d063-46ba-a292-fa6871d91f6c/ENCFF779UTQ.bigWig\ color 6,218,147\ longLabel Fibroblast of skin of back male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR184LMY Signal\ track wgEncodeReg4Epigenetics_ENCFF779UTQ\ type bigWig\ visibility full\ CarcinoidCellLineNCIH727_CNhs14244_ctss_rev Cl:NCI-H727- bigWig carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse 0 1684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H727.CNhs14244.10735-110B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10735-110B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H727-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineNCIH727_CNhs14244_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ CarcinoidCellLineNCIH727_CNhs14244_tpm_rev Cl:NCI-H727- bigWig carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse 1 1684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aNCI-H727.CNhs14244.10735-110B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:NCI-H727_CNhs14244_10735-110B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10735-110B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H727-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineNCIH727_CNhs14244_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10735-110B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF265UCH ENCSR082QGT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784 ZNF784 peaks 4 1684 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/c8e115e2-981f-4694-9c8c-d09cf1dc00e1/ENCFF265UCH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784 ZNF784 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR082QGT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF265UCH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF628AHX ENCSR184TUE Peak bigBed 5 Naive B cell DNase peak 4 1684 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/09/2d29e724-8dc7-4c4f-9741-60d3987d4b35/ENCFF628AHX.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive B cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR184TUE Peak\ track wgEncodeReg4Epigenetics_ENCFF628AHX\ type bigBed 5\ visibility squish\ SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_ctss_fwd Cl:NCI-H82+ bigWig small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_forward 0 1685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H82.CNhs12809.10842-111E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10842-111E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H82+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_tpm_fwd Cl:NCI-H82+ bigWig small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_forward 1 1685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H82.CNhs12809.10842-111E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10842-111E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H82+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF081MCE ENCSR082QGT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784 ZNF784 ENCSR082QGT signal 2 1685 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/7f1e9475-8a22-4183-9ca9-6f8811d41041/ENCFF081MCE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF784 ZNF784 ENCSR082QGT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR082QGT Signal\ track wgEncodeReg4TfChip_ENCFF081MCE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF342IAV ENCSR184TUE Signal bigWig Naive B cell DNase signal 2 1685 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/09/8ef2446c-2ef8-4e37-8362-f6928fda0ce3/ENCFF342IAV.bigWig\ color 6,218,147\ longLabel Naive B cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR184TUE Signal\ track wgEncodeReg4Epigenetics_ENCFF342IAV\ type bigWig\ visibility full\ SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_ctss_rev Cl:NCI-H82- bigWig small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse 0 1686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H82.CNhs12809.10842-111E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10842-111E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCI-H82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_tpm_rev Cl:NCI-H82- bigWig small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse 1 1686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aNCI-H82.CNhs12809.10842-111E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:NCI-H82_CNhs12809_10842-111E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10842-111E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCI-H82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineNCIH82_CNhs12809_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10842-111E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF637WNW ENCSR084RDK Peak bigBed 5 DOHH2 CTCF peaks 4 1686 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/32f854e1-574b-4fda-a538-e0397db2885f/ENCFF637WNW.bigBed\ labelFields none\ longLabel DOHH2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR084RDK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF637WNW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF918GTC ENCSR185CCV Peak bigBed 5 Stomach tissue female adult 53 years CTCF peak 4 1686 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/c623713a-dc7f-4ee0-a63e-ea7f5f9a0de9/ENCFF918GTC.bigBed\ color 0,176,240\ labelFields none\ longLabel Stomach tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR185CCV Peak\ track wgEncodeReg4Epigenetics_ENCFF918GTC\ type bigBed 5\ visibility squish\ TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_fwd Cl:NCR-G1+ bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward 0 1687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCR-G1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_fwd Cl:NCR-G1+ bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward 1 1687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCR-G1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF766DBY ENCSR084RDK Signal bigWig DOHH2 CTCF ENCSR084RDK signal 2 1687 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/14b765ac-8dfd-43d9-8a9c-ceb3a0613219/ENCFF766DBY.bigWig\ color 254,75,173\ longLabel DOHH2 CTCF ENCSR084RDK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR084RDK Signal\ track wgEncodeReg4TfChip_ENCFF766DBY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF807KJZ ENCSR185CCV Signal bigWig Stomach tissue female adult 53 years CTCF signal 2 1687 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/0eda3f59-d6de-4adf-918c-3b088f49593b/ENCFF807KJZ.bigWig\ color 0,176,240\ longLabel Stomach tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR185CCV Signal\ track wgEncodeReg4Epigenetics_ENCFF807KJZ\ type bigWig\ visibility full\ TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_rev Cl:NCR-G1- bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse 0 1688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NCR-G1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLineNCRG1_CNhs11884_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_rev Cl:NCR-G1- bigWig teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse 1 1688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aNCR-G1.CNhs11884.10798-110I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:NCR-G1_CNhs11884_10798-110I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10798-110I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NCR-G1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLineNCRG1_CNhs11884_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10798-110I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF619QDE ENCSR085DDI Peak bigBed 5 K562 NFXL1 peaks 4 1688 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/fcb788b0-0ad0-44e1-8a38-846be8b65309/ENCFF619QDE.bigBed\ labelFields none\ longLabel K562 NFXL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR085DDI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF619QDE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF638KDL ENCSR185TFI Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak 4 1688 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/1ce550e2-3cce-43e5-99a8-cf81adebeb47/ENCFF638KDL.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR185TFI Peak\ track wgEncodeReg4Epigenetics_ENCFF638KDL\ type bigBed 5\ visibility squish\ TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_ctss_fwd Cl:NEC14+ bigWig testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_forward 0 1689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC14.CNhs12351.10591-108D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10591-108D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC14+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_tpm_fwd Cl:NEC14+ bigWig testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_forward 1 1689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC14.CNhs12351.10591-108D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10591-108D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC14+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF864TZK ENCSR085DDI Signal bigWig K562 NFXL1 ENCSR085DDI signal 2 1689 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/39f25669-b6b0-4179-ae0e-c7d064b78bdb/ENCFF864TZK.bigWig\ color 254,75,173\ longLabel K562 NFXL1 ENCSR085DDI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR085DDI Signal\ track wgEncodeReg4TfChip_ENCFF864TZK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF932GWQ ENCSR185TFI Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal 2 1689 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a946e4b3-a1e5-4d94-8ebf-9eca0fb99360/ENCFF932GWQ.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR185TFI Signal\ track wgEncodeReg4Epigenetics_ENCFF932GWQ\ type bigWig\ visibility full\ TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_ctss_rev Cl:NEC14- bigWig testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_reverse 0 1690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC14.CNhs12351.10591-108D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10591-108D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC14-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_tpm_rev Cl:NEC14- bigWig testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_reverse 1 1690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC14.CNhs12351.10591-108D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC14_CNhs12351_10591-108D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10591-108D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC14-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC14_CNhs12351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10591-108D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF597LFJ ENCSR085IXF Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) SP1 peaks 4 1690 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/8040c084-e673-4bf0-99af-2fe62cf28fb4/ENCFF597LFJ.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR085IXF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF597LFJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF145XAL ENCSR186NTL Peak bigBed 5 T-cell female adult 43 years DNase peak 4 1690 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/22928457-7bf4-4f02-8c08-d0ece4385b8d/ENCFF145XAL.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 43 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR186NTL Peak\ track wgEncodeReg4Epigenetics_ENCFF145XAL\ type bigBed 5\ visibility squish\ TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_ctss_fwd Cl:NEC15+ bigWig testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_forward 0 1691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC15.CNhs12362.10593-108D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10593-108D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC15+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_tpm_fwd Cl:NEC15+ bigWig testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_forward 1 1691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC15.CNhs12362.10593-108D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10593-108D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC15+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF054DVL ENCSR085IXF Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) SP1 ENCSR085IXF signal 2 1691 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/5ae8cf38-4ea8-4162-9ea0-66e136b3e403/ENCFF054DVL.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) SP1 ENCSR085IXF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR085IXF Signal\ track wgEncodeReg4TfChip_ENCFF054DVL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF743OIJ ENCSR186NTL Signal bigWig T-cell female adult 43 years DNase signal 2 1691 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/3e70e509-6baf-4d8c-b231-4019b65d427f/ENCFF743OIJ.bigWig\ color 6,218,147\ longLabel T-cell female adult 43 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR186NTL Signal\ track wgEncodeReg4Epigenetics_ENCFF743OIJ\ type bigWig\ visibility full\ TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_ctss_rev Cl:NEC15- bigWig testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse 0 1692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC15.CNhs12362.10593-108D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10593-108D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC15-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_tpm_rev Cl:NEC15- bigWig testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse 1 1692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC15.CNhs12362.10593-108D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC15_CNhs12362_10593-108D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10593-108D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC15-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC15_CNhs12362_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10593-108D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF146YTY ENCSR085QEV Peak bigBed 5 K562 NBN peaks 4 1692 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/01d8168b-5f64-42bf-8286-dbffb035a5c7/ENCFF146YTY.bigBed\ labelFields none\ longLabel K562 NBN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR085QEV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF146YTY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF918KPI ENCSR186NVR Peak bigBed 5 Gastroesophageal sphincter tissue male adult 37 years CTCF peak 4 1692 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/c5bffd53-94cd-4caf-8737-03ccf389e936/ENCFF918KPI.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR186NVR Peak\ track wgEncodeReg4Epigenetics_ENCFF918KPI\ type bigBed 5\ visibility squish\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_fwd Cl:NEC8+ bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward 0 1693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC8+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_fwd Cl:NEC8+ bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward 1 1693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC8+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF101VAI ENCSR085QEV Signal bigWig K562 NBN ENCSR085QEV signal 2 1693 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/ec046321-b4c1-4b0a-bd18-75af1e15e92e/ENCFF101VAI.bigWig\ color 254,75,173\ longLabel K562 NBN ENCSR085QEV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR085QEV Signal\ track wgEncodeReg4TfChip_ENCFF101VAI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF517ABA ENCSR186NVR Signal bigWig Gastroesophageal sphincter tissue male adult 37 years CTCF signal 2 1693 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/082ec768-73e0-4b28-b27f-2908e65483e7/ENCFF517ABA.bigWig\ color 0,176,240\ longLabel Gastroesophageal sphincter tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR186NVR Signal\ track wgEncodeReg4Epigenetics_ENCFF517ABA\ type bigWig\ visibility full\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_rev Cl:NEC8- bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse 0 1694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NEC8-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_rev Cl:NEC8- bigWig testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse 1 1694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testicular%20germ%20cell%20embryonal%20carcinoma%20cell%20line%3aNEC8.CNhs11726.10590-108D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testicular germ cell embryonal carcinoma cell line:NEC8_CNhs11726_10590-108D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10590-108D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NEC8-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TesticularGermCellEmbryonalCarcinomaCellLineNEC8_CNhs11726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10590-108D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF370ATB ENCSR087HFN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230 ZNF230 peaks 4 1694 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/fb50a9e5-d7b6-4655-b0a3-abe6271c9672/ENCFF370ATB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230 ZNF230 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087HFN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF370ATB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF162OKK ENCSR187MVB Peak bigBed 5 Immature natural killer cell H3K27ac peak 4 1694 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/46a2ab44-e8bc-4c77-8bf3-2c7fa6dda600/ENCFF162OKK.bigBed\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR187MVB Peak\ track wgEncodeReg4Epigenetics_ENCFF162OKK\ type bigBed 5\ visibility squish\ NeuroblastomaCellLineNH12_CNhs11811_ctss_fwd Cl:NH-12+ bigWig neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_forward 0 1695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNH-12.CNhs11811.10555-107I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10555-107I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NH-12+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineNH12_CNhs11811_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNH12_CNhs11811_tpm_fwd Cl:NH-12+ bigWig neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_forward 1 1695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNH-12.CNhs11811.10555-107I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10555-107I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NH-12+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroblastomaCellLineNH12_CNhs11811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF616FNR ENCSR087HFN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230 ZNF230 ENCSR087HFN signal 2 1695 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/aafa3d62-b0ab-4f5f-8aa2-43062ee4c9fd/ENCFF616FNR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF230 ZNF230 ENCSR087HFN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087HFN Signal\ track wgEncodeReg4TfChip_ENCFF616FNR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF101AWQ ENCSR187MVB Signal bigWig Immature natural killer cell H3K27ac signal 2 1695 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/0635a578-073b-4fb0-a6d4-a4ea6ad8dec4/ENCFF101AWQ.bigWig\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR187MVB Signal\ track wgEncodeReg4Epigenetics_ENCFF101AWQ\ type bigWig\ visibility full\ NeuroblastomaCellLineNH12_CNhs11811_ctss_rev Cl:NH-12- bigWig neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse 0 1696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNH-12.CNhs11811.10555-107I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10555-107I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NH-12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNH12_CNhs11811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6\ urlLabel FANTOM5 Details:\ NeuroblastomaCellLineNH12_CNhs11811_tpm_rev Cl:NH-12- bigWig neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse 1 1696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroblastoma%20cell%20line%3aNH-12.CNhs11811.10555-107I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroblastoma cell line:NH-12_CNhs11811_10555-107I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10555-107I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NH-12-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroblastomaCellLineNH12_CNhs11811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10555-107I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF730KKG ENCSR087NSR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM1A KDM1A peaks 4 1696 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/49cf995c-a91b-415b-bbad-ab3eb6b2e5fc/ENCFF730KKG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM1A KDM1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087NSR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF730KKG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF184GEV ENCSR187PYY Peak bigBed 5 Brain tissue female embryo 142 days DNase peak 4 1696 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/99bc887b-4245-465a-9f9c-53e06a2c1eeb/ENCFF184GEV.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue female embryo 142 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR187PYY Peak\ track wgEncodeReg4Epigenetics_ENCFF184GEV\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_ctss_fwd Cl:NKM-1+ bigWig acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_forward 0 1697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aNKM-1.CNhs11864.10765-110E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10765-110E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NKM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_tpm_fwd Cl:NKM-1+ bigWig acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_forward 1 1697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aNKM-1.CNhs11864.10765-110E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10765-110E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NKM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF235INF ENCSR087NSR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM1A KDM1A ENCSR087NSR signal 2 1697 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/fafe3f99-d164-4ba6-a9c3-13cf8746ec3e/ENCFF235INF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM1A KDM1A ENCSR087NSR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087NSR Signal\ track wgEncodeReg4TfChip_ENCFF235INF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF062GSU ENCSR187PYY Signal bigWig Brain tissue female embryo 142 days DNase signal 2 1697 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/767afcbe-dc0c-4901-8173-a6cc8035e222/ENCFF062GSU.bigWig\ color 6,218,147\ longLabel Brain tissue female embryo 142 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR187PYY Signal\ track wgEncodeReg4Epigenetics_ENCFF062GSU\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_ctss_rev Cl:NKM-1- bigWig acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_reverse 0 1698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aNKM-1.CNhs11864.10765-110E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10765-110E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NKM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_tpm_rev Cl:NKM-1- bigWig acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_reverse 1 1698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M2%29%20cell%20line%3aNKM-1.CNhs11864.10765-110E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M2) cell line:NKM-1_CNhs11864_10765-110E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10765-110E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NKM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM2CellLineNKM1_CNhs11864_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10765-110E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF875PVQ ENCSR087NSZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB39 ZBTB39 peaks 4 1698 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/0d32ce24-3b4f-49a5-ba73-d3f28f5ed0bd/ENCFF875PVQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB39 ZBTB39 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087NSZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF875PVQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF665PQV ENCSR187VKR Peak bigBed 5 Excitatory neuron genetically modified insertion using TALEN inserting M. musculus Neurog2 originated from WTC11 ATAC peak 4 1698 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/7fd100b2-bcf4-4681-b821-5e1cdd04417b/ENCFF665PQV.bigBed\ color 2,199,185\ longLabel Excitatory neuron genetically modified insertion using TALEN inserting M. musculus Neurog2 originated from WTC11 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR187VKR Peak\ track wgEncodeReg4Epigenetics_ENCFF665PQV\ type bigBed 5\ visibility squish\ MyxofibrosarcomaCellLineNMFH1_CNhs11821_ctss_fwd Cl:NMFH-1+ bigWig myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_forward 0 1699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aNMFH-1.CNhs11821.10684-109E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10684-109E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NMFH-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyxofibrosarcomaCellLineNMFH1_CNhs11821_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9\ urlLabel FANTOM5 Details:\ MyxofibrosarcomaCellLineNMFH1_CNhs11821_tpm_fwd Cl:NMFH-1+ bigWig myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_forward 1 1699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aNMFH-1.CNhs11821.10684-109E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10684-109E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NMFH-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyxofibrosarcomaCellLineNMFH1_CNhs11821_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF269RRH ENCSR087NSZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB39 ZBTB39 ENCSR087NSZ signal 2 1699 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/0c245abc-7093-4596-84cd-aab2cf3e9feb/ENCFF269RRH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB39 ZBTB39 ENCSR087NSZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087NSZ Signal\ track wgEncodeReg4TfChip_ENCFF269RRH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF874BUI ENCSR187VKR Signal bigWig Excitatory neuron genetically modified insertion using TALEN inserting M. musculus Neurog2 originated from WTC11 ATAC signal 2 1699 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/54c95e4a-f4df-46a0-b643-a0b2ef73a7db/ENCFF874BUI.bigWig\ color 2,199,185\ longLabel Excitatory neuron genetically modified insertion using TALEN inserting M. musculus Neurog2 originated from WTC11 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR187VKR Signal\ track wgEncodeReg4Epigenetics_ENCFF874BUI\ type bigWig\ visibility full\ MyxofibrosarcomaCellLineNMFH1_CNhs11821_ctss_rev Cl:NMFH-1- bigWig myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_reverse 0 1700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aNMFH-1.CNhs11821.10684-109E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10684-109E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NMFH-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyxofibrosarcomaCellLineNMFH1_CNhs11821_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9\ urlLabel FANTOM5 Details:\ MyxofibrosarcomaCellLineNMFH1_CNhs11821_tpm_rev Cl:NMFH-1- bigWig myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_reverse 1 1700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myxofibrosarcoma%20cell%20line%3aNMFH-1.CNhs11821.10684-109E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel myxofibrosarcoma cell line:NMFH-1_CNhs11821_10684-109E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10684-109E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NMFH-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyxofibrosarcomaCellLineNMFH1_CNhs11821_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10684-109E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF239RSE ENCSR087TYG Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6 NR2F6 peaks 4 1700 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/5cff8fdc-6ed3-4ef3-8316-4a53ea098aaa/ENCFF239RSE.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6 NR2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087TYG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF239RSE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF972NUR ENCSR188JLO Peak bigBed 5 Small intestine tissue male embryo 105 days DNase peak 4 1700 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/2ddcbb3a-3f42-4edd-984c-c507b2fb29b9/ENCFF972NUR.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR188JLO Peak\ track wgEncodeReg4Epigenetics_ENCFF972NUR\ type bigBed 5\ visibility squish\ MesotheliomaCellLineNo36_CNhs13074_ctss_fwd Cl:No36+ bigWig mesothelioma cell line:No36_CNhs13074_10857-111G2_forward 0 1701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNo36.CNhs13074.10857-111G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:No36_CNhs13074_10857-111G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10857-111G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:No36+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNo36_CNhs13074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNo36_CNhs13074_tpm_fwd Cl:No36+ bigWig mesothelioma cell line:No36_CNhs13074_10857-111G2_forward 1 1701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNo36.CNhs13074.10857-111G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:No36_CNhs13074_10857-111G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10857-111G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:No36+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineNo36_CNhs13074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF369AZW ENCSR087TYG Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6 NR2F6 ENCSR087TYG signal 2 1701 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/3510e18c-f957-4c94-b0db-bccdb642ba15/ENCFF369AZW.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6 NR2F6 ENCSR087TYG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR087TYG Signal\ track wgEncodeReg4TfChip_ENCFF369AZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF875PHD ENCSR188JLO Signal bigWig Small intestine tissue male embryo 105 days DNase signal 2 1701 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/22347c94-db0e-40c1-8c1c-fecbb2747011/ENCFF875PHD.bigWig\ color 6,218,147\ longLabel Small intestine tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR188JLO Signal\ track wgEncodeReg4Epigenetics_ENCFF875PHD\ type bigWig\ visibility full\ MesotheliomaCellLineNo36_CNhs13074_ctss_rev Cl:No36- bigWig mesothelioma cell line:No36_CNhs13074_10857-111G2_reverse 0 1702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNo36.CNhs13074.10857-111G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:No36_CNhs13074_10857-111G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10857-111G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:No36-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNo36_CNhs13074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineNo36_CNhs13074_tpm_rev Cl:No36- bigWig mesothelioma cell line:No36_CNhs13074_10857-111G2_reverse 1 1702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aNo36.CNhs13074.10857-111G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:No36_CNhs13074_10857-111G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10857-111G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:No36-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineNo36_CNhs13074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10857-111G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF735VKJ ENCSR089DTY Peak bigBed 5 Omental fat pad tissue male adult (37 years) CTCF peaks 4 1702 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/51fd5c17-e698-41fe-a37a-d32cc0d51fa7/ENCFF735VKJ.bigBed\ labelFields none\ longLabel Omental fat pad tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR089DTY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF735VKJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF257AUK ENCSR188XCX Peak bigBed 5 Adrenal gland tissue female adult 41 years CTCF peak 4 1702 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/dabd49b4-52ad-4fcf-ac60-5ea551843f6a/ENCFF257AUK.bigBed\ color 0,176,240\ labelFields none\ longLabel Adrenal gland tissue female adult 41 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR188XCX Peak\ track wgEncodeReg4Epigenetics_ENCFF257AUK\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_ctss_fwd Cl:NOMO-1+ bigWig acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_forward 0 1703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aNOMO-1.CNhs13050.10764-110E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10764-110E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NOMO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_tpm_fwd Cl:NOMO-1+ bigWig acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_forward 1 1703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aNOMO-1.CNhs13050.10764-110E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10764-110E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NOMO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF264NFG ENCSR089DTY Signal bigWig Omental fat pad tissue male adult (37 years) CTCF ENCSR089DTY signal 2 1703 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7745d1c9-9ceb-48e4-8ecf-2c869a567b73/ENCFF264NFG.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue male adult (37 years) CTCF ENCSR089DTY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR089DTY Signal\ track wgEncodeReg4TfChip_ENCFF264NFG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF796PZW ENCSR188XCX Signal bigWig Adrenal gland tissue female adult 41 years CTCF signal 2 1703 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/5caf1c1c-9935-415c-b97a-d66fe1b28a5b/ENCFF796PZW.bigWig\ color 0,176,240\ longLabel Adrenal gland tissue female adult 41 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR188XCX Signal\ track wgEncodeReg4Epigenetics_ENCFF796PZW\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_ctss_rev Cl:NOMO-1- bigWig acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_reverse 0 1704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aNOMO-1.CNhs13050.10764-110E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10764-110E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NOMO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_tpm_rev Cl:NOMO-1- bigWig acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_reverse 1 1704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aNOMO-1.CNhs13050.10764-110E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:NOMO-1_CNhs13050_10764-110E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10764-110E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NOMO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineNOMO1_CNhs13050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10764-110E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF979TCT ENCSR089NBS Peak bigBed 5 Heart right ventricle tissue male adult (73 years) CTCF peaks 4 1704 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/8125d84e-b77d-48aa-b93a-076a3f7a8649/ENCFF979TCT.bigBed\ labelFields none\ longLabel Heart right ventricle tissue male adult (73 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR089NBS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF979TCT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF025GPL ENCSR189JIH Peak bigBed 5 Uterus tissue female adult 51 years H3K27ac peak 4 1704 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/16db886e-bad9-4a67-925b-3ec60af5a5c5/ENCFF025GPL.bigBed\ color 181,145,0\ longLabel Uterus tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189JIH Peak\ track wgEncodeReg4Epigenetics_ENCFF025GPL\ type bigBed 5\ visibility squish\ PancreaticCarcinomaCellLineNORP1_CNhs11832_ctss_fwd Cl:NOR-P1+ bigWig pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_forward 0 1705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreatic%20carcinoma%20cell%20line%3aNOR-P1.CNhs11832.10698-109G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10698-109G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NOR-P1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PancreaticCarcinomaCellLineNORP1_CNhs11832_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5\ urlLabel FANTOM5 Details:\ PancreaticCarcinomaCellLineNORP1_CNhs11832_tpm_fwd Cl:NOR-P1+ bigWig pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_forward 1 1705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreatic%20carcinoma%20cell%20line%3aNOR-P1.CNhs11832.10698-109G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10698-109G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NOR-P1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PancreaticCarcinomaCellLineNORP1_CNhs11832_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF688KIH ENCSR089NBS Signal bigWig Heart right ventricle tissue male adult (73 years) CTCF ENCSR089NBS signal 2 1705 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/a389b96e-77e2-479f-8b67-9ba1e1899abf/ENCFF688KIH.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (73 years) CTCF ENCSR089NBS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR089NBS Signal\ track wgEncodeReg4TfChip_ENCFF688KIH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477FDT ENCSR189JIH Signal bigWig Uterus tissue female adult 51 years H3K27ac signal 2 1705 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/7c9de8c1-34bd-4209-916e-40d98c593ed3/ENCFF477FDT.bigWig\ color 181,145,0\ longLabel Uterus tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189JIH Signal\ track wgEncodeReg4Epigenetics_ENCFF477FDT\ type bigWig\ visibility full\ PancreaticCarcinomaCellLineNORP1_CNhs11832_ctss_rev Cl:NOR-P1- bigWig pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_reverse 0 1706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreatic%20carcinoma%20cell%20line%3aNOR-P1.CNhs11832.10698-109G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10698-109G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NOR-P1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PancreaticCarcinomaCellLineNORP1_CNhs11832_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5\ urlLabel FANTOM5 Details:\ PancreaticCarcinomaCellLineNORP1_CNhs11832_tpm_rev Cl:NOR-P1- bigWig pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_reverse 1 1706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreatic%20carcinoma%20cell%20line%3aNOR-P1.CNhs11832.10698-109G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pancreatic carcinoma cell line:NOR-P1_CNhs11832_10698-109G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10698-109G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NOR-P1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PancreaticCarcinomaCellLineNORP1_CNhs11832_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10698-109G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF783OCM ENCSR090JNM Peak bigBed 5 K562 HLTF peaks 4 1706 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/d360e578-d630-4be7-98ef-0929f7d0c4d1/ENCFF783OCM.bigBed\ labelFields none\ longLabel K562 HLTF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR090JNM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF783OCM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF113RVP ENCSR189QAD Peak bigBed 5 Adrenal gland tissue female adult 53 years H3K27ac peak 4 1706 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/529bc6de-1217-4790-be4b-e83a91c2dc01/ENCFF113RVP.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189QAD Peak\ track wgEncodeReg4Epigenetics_ENCFF113RVP\ type bigBed 5\ visibility squish\ SignetRingCarcinomaCellLineNUGC4_CNhs11270_ctss_fwd Cl:NUGC-4+ bigWig signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_forward 0 1707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aNUGC-4.CNhs11270.10483-107A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10483-107A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NUGC-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SignetRingCarcinomaCellLineNUGC4_CNhs11270_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6\ urlLabel FANTOM5 Details:\ SignetRingCarcinomaCellLineNUGC4_CNhs11270_tpm_fwd Cl:NUGC-4+ bigWig signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_forward 1 1707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aNUGC-4.CNhs11270.10483-107A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10483-107A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NUGC-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SignetRingCarcinomaCellLineNUGC4_CNhs11270_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF480JWC ENCSR090JNM Signal bigWig K562 HLTF ENCSR090JNM signal 2 1707 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/d1461a53-78c8-40fe-8f70-56718d09c0e2/ENCFF480JWC.bigWig\ color 254,75,173\ longLabel K562 HLTF ENCSR090JNM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR090JNM Signal\ track wgEncodeReg4TfChip_ENCFF480JWC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF235TYQ ENCSR189QAD Signal bigWig Adrenal gland tissue female adult 53 years H3K27ac signal 2 1707 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/35b29533-7d09-47eb-b5fa-66b14500ec3e/ENCFF235TYQ.bigWig\ color 181,145,0\ longLabel Adrenal gland tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189QAD Signal\ track wgEncodeReg4Epigenetics_ENCFF235TYQ\ type bigWig\ visibility full\ SignetRingCarcinomaCellLineNUGC4_CNhs11270_ctss_rev Cl:NUGC-4- bigWig signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_reverse 0 1708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aNUGC-4.CNhs11270.10483-107A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10483-107A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:NUGC-4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SignetRingCarcinomaCellLineNUGC4_CNhs11270_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6\ urlLabel FANTOM5 Details:\ SignetRingCarcinomaCellLineNUGC4_CNhs11270_tpm_rev Cl:NUGC-4- bigWig signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_reverse 1 1708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/signet%20ring%20carcinoma%20cell%20line%3aNUGC-4.CNhs11270.10483-107A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel signet ring carcinoma cell line:NUGC-4_CNhs11270_10483-107A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10483-107A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:NUGC-4-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SignetRingCarcinomaCellLineNUGC4_CNhs11270_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10483-107A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF498QAM ENCSR091BOQ Peak bigBed 5 GM12878 SUZ12 peaks 4 1708 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/282a142e-405c-479e-984a-cbd6e139556a/ENCFF498QAM.bigBed\ labelFields none\ longLabel GM12878 SUZ12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091BOQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF498QAM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF072FPR ENCSR189VFC Peak bigBed 5 HG02588 ATAC peak 4 1708 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/0809a681-2f92-4a0e-a4ee-b33e443cb6e2/ENCFF072FPR.bigBed\ color 2,199,185\ longLabel HG02588 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189VFC Peak\ track wgEncodeReg4Epigenetics_ENCFF072FPR\ type bigBed 5\ visibility squish\ EndometrialCarcinomaCellLineOMC2_CNhs11266_ctss_fwd Cl:OMC-2+ bigWig endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_forward 0 1709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20carcinoma%20cell%20line%3aOMC-2.CNhs11266.10497-107C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10497-107C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:OMC-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EndometrialCarcinomaCellLineOMC2_CNhs11266_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2\ urlLabel FANTOM5 Details:\ EndometrialCarcinomaCellLineOMC2_CNhs11266_tpm_fwd Cl:OMC-2+ bigWig endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_forward 1 1709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20carcinoma%20cell%20line%3aOMC-2.CNhs11266.10497-107C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10497-107C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:OMC-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EndometrialCarcinomaCellLineOMC2_CNhs11266_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF416XSK ENCSR091BOQ Signal bigWig GM12878 SUZ12 ENCSR091BOQ signal 2 1709 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/0abe503a-f5e1-4d35-ac80-b9a2f21cb6d4/ENCFF416XSK.bigWig\ color 254,75,173\ longLabel GM12878 SUZ12 ENCSR091BOQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091BOQ Signal\ track wgEncodeReg4TfChip_ENCFF416XSK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF612JSH ENCSR189VFC Signal bigWig HG02588 ATAC signal 2 1709 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/82a3aac5-7c0c-4370-9aee-4df3b542ce06/ENCFF612JSH.bigWig\ color 2,199,185\ longLabel HG02588 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189VFC Signal\ track wgEncodeReg4Epigenetics_ENCFF612JSH\ type bigWig\ visibility full\ EndometrialCarcinomaCellLineOMC2_CNhs11266_ctss_rev Cl:OMC-2- bigWig endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_reverse 0 1710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20carcinoma%20cell%20line%3aOMC-2.CNhs11266.10497-107C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10497-107C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:OMC-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EndometrialCarcinomaCellLineOMC2_CNhs11266_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2\ urlLabel FANTOM5 Details:\ EndometrialCarcinomaCellLineOMC2_CNhs11266_tpm_rev Cl:OMC-2- bigWig endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_reverse 1 1710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20carcinoma%20cell%20line%3aOMC-2.CNhs11266.10497-107C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel endometrial carcinoma cell line:OMC-2_CNhs11266_10497-107C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10497-107C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:OMC-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EndometrialCarcinomaCellLineOMC2_CNhs11266_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10497-107C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF461UHJ ENCSR091CSG Peak bigBed 5 Gastroesophageal sphincter tissue male adult (54 years) POLR2A peaks 4 1710 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/ebb0ec79-5967-4c75-a1d6-3a75b4dfa18d/ENCFF461UHJ.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091CSG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF461UHJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF221YOA ENCSR189YJQ Peak bigBed 5 Heart tissue female embryo 110 days DNase peak 4 1710 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d7ef2269-a8a3-4742-bced-026a77dd62b6/ENCFF221YOA.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue female embryo 110 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189YJQ Peak\ track wgEncodeReg4Epigenetics_ENCFF221YOA\ type bigBed 5\ visibility squish\ EndometrialStromalSarcomaCellLineOMC9_CNhs11249_ctss_fwd Cl:OMC-9+ bigWig endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_forward 0 1711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20stromal%20sarcoma%20cell%20line%3aOMC-9.CNhs11249.10448-106F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10448-106F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:OMC-9+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EndometrialStromalSarcomaCellLineOMC9_CNhs11249_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7\ urlLabel FANTOM5 Details:\ EndometrialStromalSarcomaCellLineOMC9_CNhs11249_tpm_fwd Cl:OMC-9+ bigWig endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_forward 1 1711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20stromal%20sarcoma%20cell%20line%3aOMC-9.CNhs11249.10448-106F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10448-106F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:OMC-9+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track EndometrialStromalSarcomaCellLineOMC9_CNhs11249_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF995YVY ENCSR091CSG Signal bigWig Gastroesophageal sphincter tissue male adult (54 years) POLR2A ENCSR091CSG signal 2 1711 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/971e870e-83d9-414a-949d-f3f61862cde9/ENCFF995YVY.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (54 years) POLR2A ENCSR091CSG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091CSG Signal\ track wgEncodeReg4TfChip_ENCFF995YVY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF925KAJ ENCSR189YJQ Signal bigWig Heart tissue female embryo 110 days DNase signal 2 1711 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/8625e41a-9e01-488c-b6c0-15f780854ebb/ENCFF925KAJ.bigWig\ color 6,218,147\ longLabel Heart tissue female embryo 110 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR189YJQ Signal\ track wgEncodeReg4Epigenetics_ENCFF925KAJ\ type bigWig\ visibility full\ EndometrialStromalSarcomaCellLineOMC9_CNhs11249_ctss_rev Cl:OMC-9- bigWig endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_reverse 0 1712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20stromal%20sarcoma%20cell%20line%3aOMC-9.CNhs11249.10448-106F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10448-106F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:OMC-9-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EndometrialStromalSarcomaCellLineOMC9_CNhs11249_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7\ urlLabel FANTOM5 Details:\ EndometrialStromalSarcomaCellLineOMC9_CNhs11249_tpm_rev Cl:OMC-9- bigWig endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_reverse 1 1712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/endometrial%20stromal%20sarcoma%20cell%20line%3aOMC-9.CNhs11249.10448-106F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel endometrial stromal sarcoma cell line:OMC-9_CNhs11249_10448-106F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10448-106F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:OMC-9-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track EndometrialStromalSarcomaCellLineOMC9_CNhs11249_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10448-106F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF817JQF ENCSR091GVJ Peak bigBed 5 K562 stably expressing ATF1 ATF1 peaks 4 1712 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/2266c9fc-ebd6-40f4-b57b-171b995a334d/ENCFF817JQF.bigBed\ labelFields none\ longLabel K562 stably expressing ATF1 ATF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091GVJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF817JQF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF134ORZ ENCSR190BZA Peak bigBed 5 Chondrocyte CTCF peak 4 1712 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/3a17cf0b-7322-447e-9f58-636b20078492/ENCFF134ORZ.bigBed\ color 0,176,240\ labelFields none\ longLabel Chondrocyte CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR190BZA Peak\ track wgEncodeReg4Epigenetics_ENCFF134ORZ\ type bigBed 5\ visibility squish\ MesotheliomaCellLineONE58_CNhs13075_ctss_fwd Cl:ONE58+ bigWig mesothelioma cell line:ONE58_CNhs13075_10858-111G3_forward 0 1713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aONE58.CNhs13075.10858-111G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ONE58_CNhs13075_10858-111G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10858-111G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ONE58+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineONE58_CNhs13075_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineONE58_CNhs13075_tpm_fwd Cl:ONE58+ bigWig mesothelioma cell line:ONE58_CNhs13075_10858-111G3_forward 1 1713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aONE58.CNhs13075.10858-111G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesothelioma cell line:ONE58_CNhs13075_10858-111G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10858-111G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ONE58+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MesotheliomaCellLineONE58_CNhs13075_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF090IHN ENCSR091GVJ Signal bigWig K562 stably expressing ATF1 ATF1 ENCSR091GVJ signal 2 1713 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/3e073b08-0399-4fc2-a9cd-2c178938b54c/ENCFF090IHN.bigWig\ color 254,75,173\ longLabel K562 stably expressing ATF1 ATF1 ENCSR091GVJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091GVJ Signal\ track wgEncodeReg4TfChip_ENCFF090IHN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF044ORH ENCSR190BZA Signal bigWig Chondrocyte CTCF signal 2 1713 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/b2b7bfb0-6b63-428f-bdc2-8414bf726a4a/ENCFF044ORH.bigWig\ color 0,176,240\ longLabel Chondrocyte CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR190BZA Signal\ track wgEncodeReg4Epigenetics_ENCFF044ORH\ type bigWig\ visibility full\ MesotheliomaCellLineONE58_CNhs13075_ctss_rev Cl:ONE58- bigWig mesothelioma cell line:ONE58_CNhs13075_10858-111G3_reverse 0 1714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aONE58.CNhs13075.10858-111G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ONE58_CNhs13075_10858-111G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10858-111G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ONE58-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineONE58_CNhs13075_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3\ urlLabel FANTOM5 Details:\ MesotheliomaCellLineONE58_CNhs13075_tpm_rev Cl:ONE58- bigWig mesothelioma cell line:ONE58_CNhs13075_10858-111G3_reverse 1 1714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesothelioma%20cell%20line%3aONE58.CNhs13075.10858-111G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesothelioma cell line:ONE58_CNhs13075_10858-111G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10858-111G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ONE58-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MesotheliomaCellLineONE58_CNhs13075_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10858-111G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF919JVU ENCSR091JXL Peak bigBed 5 K562 HES1 peaks 4 1714 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/ea8999ed-d9aa-41c5-9a7b-263ee8689bc5/ENCFF919JVU.bigBed\ labelFields none\ longLabel K562 HES1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091JXL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF919JVU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF034SJN ENCSR191EII Peak bigBed 5 Common myeloid progenitor, CD34-positive female DNase peak 4 1714 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/dd7a7c85-fcd7-4234-b831-b4120db15a4c/ENCFF034SJN.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive female DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191EII Peak\ track wgEncodeReg4Epigenetics_ENCFF034SJN\ type bigBed 5\ visibility squish\ MedulloblastomaCellLineONS76_CNhs11861_ctss_fwd Cl:ONS-76+ bigWig medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_forward 0 1715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aONS-76.CNhs11861.10759-110E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10759-110E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ONS-76+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MedulloblastomaCellLineONS76_CNhs11861_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3\ urlLabel FANTOM5 Details:\ MedulloblastomaCellLineONS76_CNhs11861_tpm_fwd Cl:ONS-76+ bigWig medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_forward 1 1715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aONS-76.CNhs11861.10759-110E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10759-110E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ONS-76+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MedulloblastomaCellLineONS76_CNhs11861_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF143EEL ENCSR091JXL Signal bigWig K562 HES1 ENCSR091JXL signal 2 1715 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/d72a6a00-462a-4c3f-9762-2f4d69ad77e2/ENCFF143EEL.bigWig\ color 254,75,173\ longLabel K562 HES1 ENCSR091JXL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR091JXL Signal\ track wgEncodeReg4TfChip_ENCFF143EEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF526CFK ENCSR191EII Signal bigWig Common myeloid progenitor, CD34-positive female DNase signal 2 1715 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/f682ae07-1f8d-4ef1-8243-de08600ea71a/ENCFF526CFK.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive female DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191EII Signal\ track wgEncodeReg4Epigenetics_ENCFF526CFK\ type bigWig\ visibility full\ MedulloblastomaCellLineONS76_CNhs11861_ctss_rev Cl:ONS-76- bigWig medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_reverse 0 1716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aONS-76.CNhs11861.10759-110E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10759-110E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:ONS-76-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MedulloblastomaCellLineONS76_CNhs11861_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3\ urlLabel FANTOM5 Details:\ MedulloblastomaCellLineONS76_CNhs11861_tpm_rev Cl:ONS-76- bigWig medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_reverse 1 1716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulloblastoma%20cell%20line%3aONS-76.CNhs11861.10759-110E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulloblastoma cell line:ONS-76_CNhs11861_10759-110E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10759-110E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:ONS-76-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MedulloblastomaCellLineONS76_CNhs11861_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10759-110E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF005KGL ENCSR092OVN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 peaks 4 1716 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ac3f1d0b-0b8e-438e-b36d-12cab891c371/ENCFF005KGL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR092OVN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF005KGL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF803UKZ ENCSR191ULN Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K4me3 peak 4 1716 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/aa1e8012-fbd0-4548-befb-6b678d82c7be/ENCFF803UKZ.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191ULN Peak\ track wgEncodeReg4Epigenetics_ENCFF803UKZ\ type bigBed 5\ visibility squish\ RenalCellCarcinomaCellLineOSRC2_CNhs10729_ctss_fwd Cl:OS-RC-2+ bigWig renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_forward 0 1717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aOS-RC-2.CNhs10729.10411-106B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10411-106B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:OS-RC-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RenalCellCarcinomaCellLineOSRC2_CNhs10729_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6\ urlLabel FANTOM5 Details:\ RenalCellCarcinomaCellLineOSRC2_CNhs10729_tpm_fwd Cl:OS-RC-2+ bigWig renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_forward 1 1717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aOS-RC-2.CNhs10729.10411-106B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10411-106B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:OS-RC-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RenalCellCarcinomaCellLineOSRC2_CNhs10729_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF737TUE ENCSR092OVN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 ENCSR092OVN signal 2 1717 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ca63e5d0-c3f5-4fbb-bef1-f7676b420d95/ENCFF737TUE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 ENCSR092OVN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR092OVN Signal\ track wgEncodeReg4TfChip_ENCFF737TUE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF190GZS ENCSR191ULN Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K4me3 signal 2 1717 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/525ec846-34a2-401e-8e24-23ede4415b23/ENCFF190GZS.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191ULN Signal\ track wgEncodeReg4Epigenetics_ENCFF190GZS\ type bigWig\ visibility full\ RenalCellCarcinomaCellLineOSRC2_CNhs10729_ctss_rev Cl:OS-RC-2- bigWig renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_reverse 0 1718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aOS-RC-2.CNhs10729.10411-106B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10411-106B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:OS-RC-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RenalCellCarcinomaCellLineOSRC2_CNhs10729_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6\ urlLabel FANTOM5 Details:\ RenalCellCarcinomaCellLineOSRC2_CNhs10729_tpm_rev Cl:OS-RC-2- bigWig renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_reverse 1 1718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aOS-RC-2.CNhs10729.10411-106B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel renal cell carcinoma cell line:OS-RC-2_CNhs10729_10411-106B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10411-106B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:OS-RC-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RenalCellCarcinomaCellLineOSRC2_CNhs10729_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10411-106B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF257LSY ENCSR092VKJ Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 1718 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/4af41527-4193-4e84-8495-48cc9c3eec7c/ENCFF257LSY.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR092VKJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF257LSY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF904KOG ENCSR191YDG Peak bigBed 5 Multiple sclerosis CD14-positive monocyte H3K27ac peak 4 1718 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/7a21c6be-05a4-47ee-8fdb-c22ff40ac582/ENCFF904KOG.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD14-positive monocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191YDG Peak\ track wgEncodeReg4Epigenetics_ENCFF904KOG\ type bigBed 5\ visibility squish\ NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_ctss_fwd Cl:P30/OHK+ bigWig non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_forward 0 1719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non%20T%20non%20B%20acute%20lymphoblastic%20leukemia%20%28ALL%29%20cell%20line%3aP30%20OHK.CNhs10747.10430-106D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10430-106D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:P30/OHK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7\ urlLabel FANTOM5 Details:\ NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_tpm_fwd Cl:P30/OHK+ bigWig non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_forward 1 1719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non%20T%20non%20B%20acute%20lymphoblastic%20leukemia%20%28ALL%29%20cell%20line%3aP30%20OHK.CNhs10747.10430-106D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10430-106D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:P30/OHK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF891CZD ENCSR092VKJ Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR092VKJ signal 2 1719 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/34685c0f-cb7d-43f4-9f88-b0e0fcc99965/ENCFF891CZD.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR092VKJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR092VKJ Signal\ track wgEncodeReg4TfChip_ENCFF891CZD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF716ZMD ENCSR191YDG Signal bigWig Multiple sclerosis CD14-positive monocyte H3K27ac signal 2 1719 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/b7c6a83a-9957-4bbe-b3dd-8bac2162d8ad/ENCFF716ZMD.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD14-positive monocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191YDG Signal\ track wgEncodeReg4Epigenetics_ENCFF716ZMD\ type bigWig\ visibility full\ NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_ctss_rev Cl:P30/OHK- bigWig non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_reverse 0 1720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non%20T%20non%20B%20acute%20lymphoblastic%20leukemia%20%28ALL%29%20cell%20line%3aP30%20OHK.CNhs10747.10430-106D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10430-106D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:P30/OHK-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7\ urlLabel FANTOM5 Details:\ NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_tpm_rev Cl:P30/OHK- bigWig non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_reverse 1 1720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/non%20T%20non%20B%20acute%20lymphoblastic%20leukemia%20%28ALL%29%20cell%20line%3aP30%20OHK.CNhs10747.10430-106D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel non T non B acute lymphoblastic leukemia (ALL) cell line:P30/OHK_CNhs10747_10430-106D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10430-106D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:P30/OHK-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NonTNonBAcuteLymphoblasticLeukemiaALLCellLineP30OHK_CNhs10747_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10430-106D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF985QJI ENCSR093FKD Peak bigBed 5 K562 stably expressing CREB3 CREB3 peaks 4 1720 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/85e320f3-f7fa-4b33-afd7-2ffdd4447be4/ENCFF985QJI.bigBed\ labelFields none\ longLabel K562 stably expressing CREB3 CREB3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR093FKD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF985QJI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF780GLY ENCSR191ZQT Peak bigBed 5 B cell male adult 37 years H3K27ac peak 4 1720 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8484a32a-aef6-44e5-9115-1951bc4b91b6/ENCFF780GLY.bigBed\ color 181,145,0\ longLabel B cell male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191ZQT Peak\ track wgEncodeReg4Epigenetics_ENCFF780GLY\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_ctss_fwd Cl:P31/FUJ+ bigWig acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_forward 0 1721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aP31%20FUJ.CNhs13051.10770-110F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10770-110F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:P31/FUJ+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_tpm_fwd Cl:P31/FUJ+ bigWig acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_forward 1 1721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aP31%20FUJ.CNhs13051.10770-110F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10770-110F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:P31/FUJ+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF132DIX ENCSR093FKD Signal bigWig K562 stably expressing CREB3 CREB3 ENCSR093FKD signal 2 1721 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/d1c30d02-508a-47ef-af21-b8c8cc1af8cb/ENCFF132DIX.bigWig\ color 254,75,173\ longLabel K562 stably expressing CREB3 CREB3 ENCSR093FKD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR093FKD Signal\ track wgEncodeReg4TfChip_ENCFF132DIX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF089VAB ENCSR191ZQT Signal bigWig B cell male adult 37 years H3K27ac signal 2 1721 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/cb93f31c-8678-4467-a714-ca67395b4f1f/ENCFF089VAB.bigWig\ color 181,145,0\ longLabel B cell male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR191ZQT Signal\ track wgEncodeReg4Epigenetics_ENCFF089VAB\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_ctss_rev Cl:P31/FUJ- bigWig acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_reverse 0 1722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aP31%20FUJ.CNhs13051.10770-110F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10770-110F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:P31/FUJ-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_tpm_rev Cl:P31/FUJ- bigWig acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_reverse 1 1722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aP31%20FUJ.CNhs13051.10770-110F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:P31/FUJ_CNhs13051_10770-110F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10770-110F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:P31/FUJ-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineP31FUJ_CNhs13051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10770-110F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF231FLW ENCSR093HXE Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF16 ZNF16 peaks 4 1722 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/f7a13a6f-67c9-4a4d-9e08-971370f5a4dc/ENCFF231FLW.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF16 ZNF16 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR093HXE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF231FLW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF473HLK ENCSR192GUR Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult 42 years H3K4me3 peak 4 1722 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/dd472900-bdad-4c0c-a186-2f50c1c09379/ENCFF473HLK.bigBed\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive male adult 42 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR192GUR Peak\ track wgEncodeReg4Epigenetics_ENCFF473HLK\ type bigBed 5\ visibility squish\ TeratocarcinomaCellLinePA1_CNhs11890_ctss_fwd Cl:PA-1+ bigWig teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_forward 0 1723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aPA-1.CNhs11890.10807-111A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10807-111A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PA-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLinePA1_CNhs11890_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLinePA1_CNhs11890_tpm_fwd Cl:PA-1+ bigWig teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_forward 1 1723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aPA-1.CNhs11890.10807-111A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10807-111A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PA-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TeratocarcinomaCellLinePA1_CNhs11890_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF024XFG ENCSR093HXE Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF16 ZNF16 ENCSR093HXE signal 2 1723 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/b2c2a583-8149-42f3-a7eb-8ff5589f56eb/ENCFF024XFG.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF16 ZNF16 ENCSR093HXE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR093HXE Signal\ track wgEncodeReg4TfChip_ENCFF024XFG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF588MYC ENCSR192GUR Signal bigWig Common myeloid progenitor, CD34-positive male adult 42 years H3K4me3 signal 2 1723 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/bdbb2e6c-1665-4585-b128-63a723c72c66/ENCFF588MYC.bigWig\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive male adult 42 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR192GUR Signal\ track wgEncodeReg4Epigenetics_ENCFF588MYC\ type bigWig\ visibility full\ TeratocarcinomaCellLinePA1_CNhs11890_ctss_rev Cl:PA-1- bigWig teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_reverse 0 1724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aPA-1.CNhs11890.10807-111A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10807-111A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PA-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLinePA1_CNhs11890_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6\ urlLabel FANTOM5 Details:\ TeratocarcinomaCellLinePA1_CNhs11890_tpm_rev Cl:PA-1- bigWig teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_reverse 1 1724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/teratocarcinoma%20cell%20line%3aPA-1.CNhs11890.10807-111A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel teratocarcinoma cell line:PA-1_CNhs11890_10807-111A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10807-111A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PA-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TeratocarcinomaCellLinePA1_CNhs11890_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10807-111A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF628TCI ENCSR094PSL Peak bigBed 5 Middle frontal area 46 tissue female adult (88 years) CTCF peaks 4 1724 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/8e6e9e8c-0b15-4ec2-941c-b15e09fa618f/ENCFF628TCI.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (88 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR094PSL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF628TCI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF232KSI ENCSR193LYA Peak bigBed 5 Muscle of back tissue female embryo 85 days DNase peak 4 1724 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/0c50e4cb-ad20-420d-bb3b-c376b611ff37/ENCFF232KSI.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue female embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR193LYA Peak\ track wgEncodeReg4Epigenetics_ENCFF232KSI\ type bigBed 5\ visibility squish\ LungAdenocarcinomaCellLinePC14_CNhs10726_ctss_fwd Cl:PC-14+ bigWig lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_forward 0 1725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aPC-14.CNhs10726.10408-106B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10408-106B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PC-14+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaCellLinePC14_CNhs10726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaCellLinePC14_CNhs10726_tpm_fwd Cl:PC-14+ bigWig lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_forward 1 1725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aPC-14.CNhs10726.10408-106B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10408-106B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PC-14+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LungAdenocarcinomaCellLinePC14_CNhs10726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF294XWZ ENCSR094PSL Signal bigWig Middle frontal area 46 tissue female adult (88 years) CTCF ENCSR094PSL signal 2 1725 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/904810fe-7e4d-4607-aaf4-641730158cc3/ENCFF294XWZ.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (88 years) CTCF ENCSR094PSL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR094PSL Signal\ track wgEncodeReg4TfChip_ENCFF294XWZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF779FPU ENCSR193LYA Signal bigWig Muscle of back tissue female embryo 85 days DNase signal 2 1725 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/e92e85d8-b7af-4e6d-b7a1-d3a6899b6a1d/ENCFF779FPU.bigWig\ color 6,218,147\ longLabel Muscle of back tissue female embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR193LYA Signal\ track wgEncodeReg4Epigenetics_ENCFF779FPU\ type bigWig\ visibility full\ LungAdenocarcinomaCellLinePC14_CNhs10726_ctss_rev Cl:PC-14- bigWig lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_reverse 0 1726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aPC-14.CNhs10726.10408-106B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10408-106B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PC-14-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaCellLinePC14_CNhs10726_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3\ urlLabel FANTOM5 Details:\ LungAdenocarcinomaCellLinePC14_CNhs10726_tpm_rev Cl:PC-14- bigWig lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_reverse 1 1726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%20adenocarcinoma%20cell%20line%3aPC-14.CNhs10726.10408-106B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung adenocarcinoma cell line:PC-14_CNhs10726_10408-106B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10408-106B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PC-14-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LungAdenocarcinomaCellLinePC14_CNhs10726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10408-106B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF155HZI ENCSR094ZCF Peak bigBed 5 MCF-7 stably expressing CEBPG CEBPG peaks 4 1726 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/5f156128-7275-4e20-949c-c251e773c6e2/ENCFF155HZI.bigBed\ labelFields none\ longLabel MCF-7 stably expressing CEBPG CEBPG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR094ZCF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF155HZI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF306DTP ENCSR193VOB Peak bigBed 5 Endodermal cell H3K27ac peak 4 1726 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/75bbe61c-db97-4846-b798-c5da4a740e89/ENCFF306DTP.bigBed\ color 181,145,0\ longLabel Endodermal cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR193VOB Peak\ track wgEncodeReg4Epigenetics_ENCFF306DTP\ type bigBed 5\ visibility squish\ ProstateCancerCellLinePC3_CNhs11243_ctss_fwd Cl:PC-3+ bigWig prostate cancer cell line:PC-3_CNhs11243_10439-106E7_forward 0 1727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aPC-3.CNhs11243.10439-106E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel prostate cancer cell line:PC-3_CNhs11243_10439-106E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10439-106E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PC-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ProstateCancerCellLinePC3_CNhs11243_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7\ urlLabel FANTOM5 Details:\ ProstateCancerCellLinePC3_CNhs11243_tpm_fwd Cl:PC-3+ bigWig prostate cancer cell line:PC-3_CNhs11243_10439-106E7_forward 1 1727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aPC-3.CNhs11243.10439-106E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel prostate cancer cell line:PC-3_CNhs11243_10439-106E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10439-106E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PC-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ProstateCancerCellLinePC3_CNhs11243_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF196RXI ENCSR094ZCF Signal bigWig MCF-7 stably expressing CEBPG CEBPG ENCSR094ZCF signal 2 1727 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/917a6015-c059-4774-a25b-a5787e8fbd33/ENCFF196RXI.bigWig\ color 65,171,173\ longLabel MCF-7 stably expressing CEBPG CEBPG ENCSR094ZCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR094ZCF Signal\ track wgEncodeReg4TfChip_ENCFF196RXI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF504UNY ENCSR193VOB Signal bigWig Endodermal cell H3K27ac signal 2 1727 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d5c86194-b5ab-46be-a6fc-c41cbc400a41/ENCFF504UNY.bigWig\ color 181,145,0\ longLabel Endodermal cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR193VOB Signal\ track wgEncodeReg4Epigenetics_ENCFF504UNY\ type bigWig\ visibility full\ ProstateCancerCellLinePC3_CNhs11243_ctss_rev Cl:PC-3- bigWig prostate cancer cell line:PC-3_CNhs11243_10439-106E7_reverse 0 1728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aPC-3.CNhs11243.10439-106E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel prostate cancer cell line:PC-3_CNhs11243_10439-106E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10439-106E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PC-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ProstateCancerCellLinePC3_CNhs11243_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7\ urlLabel FANTOM5 Details:\ ProstateCancerCellLinePC3_CNhs11243_tpm_rev Cl:PC-3- bigWig prostate cancer cell line:PC-3_CNhs11243_10439-106E7_reverse 1 1728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%20cancer%20cell%20line%3aPC-3.CNhs11243.10439-106E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel prostate cancer cell line:PC-3_CNhs11243_10439-106E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10439-106E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PC-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ProstateCancerCellLinePC3_CNhs11243_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10439-106E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF456LSA ENCSR096IIB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 peaks 4 1728 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/22ecf9fa-4b40-4749-b949-8caa6d839636/ENCFF456LSA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096IIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF456LSA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF846BTG ENCSR194KGO Peak bigBed 5 Skin epidermis tissue female adult 66 years H3K27ac peak 4 1728 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/4ec9fb80-9d1c-4121-a295-85527b79506a/ENCFF846BTG.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue female adult 66 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194KGO Peak\ track wgEncodeReg4Epigenetics_ENCFF846BTG\ type bigBed 5\ visibility squish\ MyelomaCellLinePCM6_CNhs11258_ctss_fwd Cl:PCM6+ bigWig myeloma cell line:PCM6_CNhs11258_10474-106I6_forward 0 1729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myeloma%20cell%20line%3aPCM6.CNhs11258.10474-106I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel myeloma cell line:PCM6_CNhs11258_10474-106I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10474-106I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PCM6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyelomaCellLinePCM6_CNhs11258_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6\ urlLabel FANTOM5 Details:\ MyelomaCellLinePCM6_CNhs11258_tpm_fwd Cl:PCM6+ bigWig myeloma cell line:PCM6_CNhs11258_10474-106I6_forward 1 1729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myeloma%20cell%20line%3aPCM6.CNhs11258.10474-106I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel myeloma cell line:PCM6_CNhs11258_10474-106I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10474-106I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PCM6+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyelomaCellLinePCM6_CNhs11258_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF506TIN ENCSR096IIB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 ENCSR096IIB signal 2 1729 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/eeece12d-9ad1-4314-9b30-723012dfaba0/ENCFF506TIN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 ENCSR096IIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096IIB Signal\ track wgEncodeReg4TfChip_ENCFF506TIN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF926ENP ENCSR194KGO Signal bigWig Skin epidermis tissue female adult 66 years H3K27ac signal 2 1729 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/201e3b5d-d0ae-4e6b-9e0f-e2cd6769800d/ENCFF926ENP.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue female adult 66 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194KGO Signal\ track wgEncodeReg4Epigenetics_ENCFF926ENP\ type bigWig\ visibility full\ MyelomaCellLinePCM6_CNhs11258_ctss_rev Cl:PCM6- bigWig myeloma cell line:PCM6_CNhs11258_10474-106I6_reverse 0 1730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myeloma%20cell%20line%3aPCM6.CNhs11258.10474-106I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel myeloma cell line:PCM6_CNhs11258_10474-106I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10474-106I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:PCM6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyelomaCellLinePCM6_CNhs11258_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6\ urlLabel FANTOM5 Details:\ MyelomaCellLinePCM6_CNhs11258_tpm_rev Cl:PCM6- bigWig myeloma cell line:PCM6_CNhs11258_10474-106I6_reverse 1 1730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myeloma%20cell%20line%3aPCM6.CNhs11258.10474-106I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel myeloma cell line:PCM6_CNhs11258_10474-106I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10474-106I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:PCM6-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyelomaCellLinePCM6_CNhs11258_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10474-106I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF506FWX ENCSR096KPA Peak bigBed 5 GM23248 EZH2phosphoT487 peaks 4 1730 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/ae158f3e-3f94-4785-bbf5-e0bb395fb3f2/ENCFF506FWX.bigBed\ labelFields none\ longLabel GM23248 EZH2phosphoT487 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096KPA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF506FWX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF403GEI ENCSR194LMK Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K4me3 peak 4 1730 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/dc307e47-d2de-4a19-8e21-772b76c045bb/ENCFF403GEI.bigBed\ color 255,0,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194LMK Peak\ track wgEncodeReg4Epigenetics_ENCFF403GEI\ type bigBed 5\ visibility squish\ SomatostatinomaCellLineQGP1_CNhs11869_ctss_fwd Cl:QGP-1+ bigWig somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_forward 0 1731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/somatostatinoma%20cell%20line%3aQGP-1.CNhs11869.10781-110G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10781-110G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:QGP-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SomatostatinomaCellLineQGP1_CNhs11869_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7\ urlLabel FANTOM5 Details:\ SomatostatinomaCellLineQGP1_CNhs11869_tpm_fwd Cl:QGP-1+ bigWig somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_forward 1 1731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/somatostatinoma%20cell%20line%3aQGP-1.CNhs11869.10781-110G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10781-110G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:QGP-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SomatostatinomaCellLineQGP1_CNhs11869_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF674EPZ ENCSR096KPA Signal bigWig GM23248 EZH2phosphoT487 ENCSR096KPA signal 2 1731 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/25d89c72-c438-4430-bbb4-332d7d6949a0/ENCFF674EPZ.bigWig\ color 127,133,209\ longLabel GM23248 EZH2phosphoT487 ENCSR096KPA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096KPA Signal\ track wgEncodeReg4TfChip_ENCFF674EPZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF419XND ENCSR194LMK Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K4me3 signal 2 1731 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/21a1ecf0-e78e-4141-9a48-ec1a3ef673f5/ENCFF419XND.bigWig\ color 255,0,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194LMK Signal\ track wgEncodeReg4Epigenetics_ENCFF419XND\ type bigWig\ visibility full\ SomatostatinomaCellLineQGP1_CNhs11869_ctss_rev Cl:QGP-1- bigWig somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_reverse 0 1732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/somatostatinoma%20cell%20line%3aQGP-1.CNhs11869.10781-110G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10781-110G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:QGP-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SomatostatinomaCellLineQGP1_CNhs11869_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7\ urlLabel FANTOM5 Details:\ SomatostatinomaCellLineQGP1_CNhs11869_tpm_rev Cl:QGP-1- bigWig somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_reverse 1 1732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/somatostatinoma%20cell%20line%3aQGP-1.CNhs11869.10781-110G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel somatostatinoma cell line:QGP-1_CNhs11869_10781-110G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10781-110G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:QGP-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SomatostatinomaCellLineQGP1_CNhs11869_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10781-110G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF113YEY ENCSR096KWU Peak bigBed 5 MCF-7 ZNF207 peaks 4 1732 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/88c947e7-635f-4be1-b8f5-ad09d41e1305/ENCFF113YEY.bigBed\ labelFields none\ longLabel MCF-7 ZNF207 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096KWU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF113YEY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF601VLR ENCSR194MJA Peak bigBed 5 Placental basal plate tissue female embryo 40 weeks H3K4me3 peak 4 1732 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6b844e47-2052-48bc-95e9-d1daeabf7134/ENCFF601VLR.bigBed\ color 255,0,0\ longLabel Placental basal plate tissue female embryo 40 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194MJA Peak\ track wgEncodeReg4Epigenetics_ENCFF601VLR\ type bigBed 5\ visibility squish\ BurkittsLymphomaCellLineRAJI_CNhs11268_ctss_fwd Cl:RAJI+ bigWig Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_forward 0 1733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aRAJI.CNhs11268.10476-106I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10476-106I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RAJI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BurkittsLymphomaCellLineRAJI_CNhs11268_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8\ urlLabel FANTOM5 Details:\ BurkittsLymphomaCellLineRAJI_CNhs11268_tpm_fwd Cl:RAJI+ bigWig Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_forward 1 1733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aRAJI.CNhs11268.10476-106I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10476-106I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RAJI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BurkittsLymphomaCellLineRAJI_CNhs11268_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF443EDY ENCSR096KWU Signal bigWig MCF-7 ZNF207 ENCSR096KWU signal 2 1733 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/15e6f4f6-e11a-4475-98b9-3dfe00c30391/ENCFF443EDY.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF207 ENCSR096KWU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096KWU Signal\ track wgEncodeReg4TfChip_ENCFF443EDY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF174HPH ENCSR194MJA Signal bigWig Placental basal plate tissue female embryo 40 weeks H3K4me3 signal 2 1733 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c622e79e-8484-4e78-aba3-9db6c631fdbf/ENCFF174HPH.bigWig\ color 255,0,0\ longLabel Placental basal plate tissue female embryo 40 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194MJA Signal\ track wgEncodeReg4Epigenetics_ENCFF174HPH\ type bigWig\ visibility full\ BurkittsLymphomaCellLineRAJI_CNhs11268_ctss_rev Cl:RAJI- bigWig Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_reverse 0 1734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aRAJI.CNhs11268.10476-106I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10476-106I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RAJI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BurkittsLymphomaCellLineRAJI_CNhs11268_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8\ urlLabel FANTOM5 Details:\ BurkittsLymphomaCellLineRAJI_CNhs11268_tpm_rev Cl:RAJI- bigWig Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_reverse 1 1734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Burkitt%27s%20lymphoma%20cell%20line%3aRAJI.CNhs11268.10476-106I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Burkitt's lymphoma cell line:RAJI_CNhs11268_10476-106I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10476-106I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RAJI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BurkittsLymphomaCellLineRAJI_CNhs11268_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10476-106I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF744MZI ENCSR096OUP Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4 NFATC4 peaks 4 1734 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/27/f27757c9-455d-4673-b2dc-7aa3905831fb/ENCFF744MZI.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4 NFATC4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096OUP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF744MZI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF972IQB ENCSR194WQV Peak bigBed 5 Nephron organoid female embryo 5 days, 49 days post differentiation CTCF peak 4 1734 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/20/f3b3f21f-782f-44af-919a-332e8922a2b4/ENCFF972IQB.bigBed\ color 0,176,240\ labelFields none\ longLabel Nephron organoid female embryo 5 days, 49 days post differentiation CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194WQV Peak\ track wgEncodeReg4Epigenetics_ENCFF972IQB\ type bigBed 5\ visibility squish\ SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_ctss_fwd Cl:RERF-LC-AI+ bigWig squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_forward 0 1735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aRERF-LC-AI.CNhs14240.10501-107C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10501-107C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RERF-LC-AI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_tpm_fwd Cl:RERF-LC-AI+ bigWig squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_forward 1 1735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aRERF-LC-AI.CNhs14240.10501-107C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10501-107C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RERF-LC-AI+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF531JMS ENCSR096OUP Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4 NFATC4 ENCSR096OUP signal 2 1735 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/27/204e3900-396b-4cb4-ab6d-84365011d65f/ENCFF531JMS.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC4 NFATC4 ENCSR096OUP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR096OUP Signal\ track wgEncodeReg4TfChip_ENCFF531JMS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF923LDW ENCSR194WQV Signal bigWig Nephron organoid female embryo 5 days, 49 days post differentiation CTCF signal 2 1735 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/20/40668882-cb70-43b0-a2b9-25252c60a833/ENCFF923LDW.bigWig\ color 0,176,240\ longLabel Nephron organoid female embryo 5 days, 49 days post differentiation CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR194WQV Signal\ track wgEncodeReg4Epigenetics_ENCFF923LDW\ type bigWig\ visibility full\ SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_ctss_rev Cl:RERF-LC-AI- bigWig squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_reverse 0 1736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aRERF-LC-AI.CNhs14240.10501-107C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10501-107C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RERF-LC-AI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6\ urlLabel FANTOM5 Details:\ SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_tpm_rev Cl:RERF-LC-AI- bigWig squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_reverse 1 1736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20lung%20carcinoma%20cell%20line%3aRERF-LC-AI.CNhs14240.10501-107C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel squamous cell lung carcinoma cell line:RERF-LC-AI_CNhs14240_10501-107C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10501-107C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RERF-LC-AI-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellLungCarcinomaCellLineRERFLCAI_CNhs14240_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10501-107C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF238INU ENCSR097EEA Peak bigBed 5 Gastroesophageal sphincter tissue female adult (53 years) POLR2A peaks 4 1736 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/24b89f29-c3a7-4cf4-a0eb-7fa2fd489080/ENCFF238INU.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR097EEA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF238INU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF150WIK ENCSR195CFR Peak bigBed 5 Middle frontal area 46 tissue male adult 81 years H3K27ac peak 4 1736 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/b6fe8332-e531-45a2-8eba-331b89a27866/ENCFF150WIK.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195CFR Peak\ track wgEncodeReg4Epigenetics_ENCFF150WIK\ type bigBed 5\ visibility squish\ RhabdomyosarcomaCellLineRMSYM_CNhs11269_ctss_fwd Cl:RMS-YM+ bigWig rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_forward 0 1737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aRMS-YM.CNhs11269.10477-106I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10477-106I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RMS-YM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RhabdomyosarcomaCellLineRMSYM_CNhs11269_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9\ urlLabel FANTOM5 Details:\ RhabdomyosarcomaCellLineRMSYM_CNhs11269_tpm_fwd Cl:RMS-YM+ bigWig rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_forward 1 1737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aRMS-YM.CNhs11269.10477-106I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10477-106I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RMS-YM+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RhabdomyosarcomaCellLineRMSYM_CNhs11269_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF689MCJ ENCSR097EEA Signal bigWig Gastroesophageal sphincter tissue female adult (53 years) POLR2A ENCSR097EEA signal 2 1737 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/437fb755-54aa-4444-9b37-d96696efa2c2/ENCFF689MCJ.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (53 years) POLR2A ENCSR097EEA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR097EEA Signal\ track wgEncodeReg4TfChip_ENCFF689MCJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF256VRG ENCSR195CFR Signal bigWig Middle frontal area 46 tissue male adult 81 years H3K27ac signal 2 1737 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/4c41e956-42e9-4804-9f30-da6e1290eba3/ENCFF256VRG.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195CFR Signal\ track wgEncodeReg4Epigenetics_ENCFF256VRG\ type bigWig\ visibility full\ RhabdomyosarcomaCellLineRMSYM_CNhs11269_ctss_rev Cl:RMS-YM- bigWig rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_reverse 0 1738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aRMS-YM.CNhs11269.10477-106I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10477-106I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RMS-YM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RhabdomyosarcomaCellLineRMSYM_CNhs11269_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9\ urlLabel FANTOM5 Details:\ RhabdomyosarcomaCellLineRMSYM_CNhs11269_tpm_rev Cl:RMS-YM- bigWig rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_reverse 1 1738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rhabdomyosarcoma%20cell%20line%3aRMS-YM.CNhs11269.10477-106I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel rhabdomyosarcoma cell line:RMS-YM_CNhs11269_10477-106I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10477-106I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RMS-YM-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RhabdomyosarcomaCellLineRMSYM_CNhs11269_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10477-106I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF807CIA ENCSR098XMN Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) RXRA peaks 4 1738 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/6ffd1335-70ee-4ed9-869e-3637d5c2bf47/ENCFF807CIA.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) RXRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR098XMN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF807CIA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF023FME ENCSR195GUK Peak bigBed 5 Posterior cingulate gyrus tissue male adult 82 years DNase peak 4 1738 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/b85bb7c1-a510-4b53-9bb3-607c0bd06fd6/ENCFF023FME.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue male adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195GUK Peak\ track wgEncodeReg4Epigenetics_ENCFF023FME\ type bigBed 5\ visibility squish\ BCellLineRPMI1788_CNhs10744_ctss_fwd Cl:RPMI1788+ bigWig b cell line:RPMI1788_CNhs10744_10427-106D4_forward 0 1739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/b%20cell%20line%3aRPMI1788.CNhs10744.10427-106D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel b cell line:RPMI1788_CNhs10744_10427-106D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10427-106D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RPMI1788+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BCellLineRPMI1788_CNhs10744_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4\ urlLabel FANTOM5 Details:\ BCellLineRPMI1788_CNhs10744_tpm_fwd Cl:RPMI1788+ bigWig b cell line:RPMI1788_CNhs10744_10427-106D4_forward 1 1739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/b%20cell%20line%3aRPMI1788.CNhs10744.10427-106D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel b cell line:RPMI1788_CNhs10744_10427-106D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10427-106D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RPMI1788+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BCellLineRPMI1788_CNhs10744_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF032MRC ENCSR098XMN Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) RXRA ENCSR098XMN signal 2 1739 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/cbf7b64a-0fe7-49a9-aba8-876b6ed5db12/ENCFF032MRC.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) RXRA ENCSR098XMN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR098XMN Signal\ track wgEncodeReg4TfChip_ENCFF032MRC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF287RNZ ENCSR195GUK Signal bigWig Posterior cingulate gyrus tissue male adult 82 years DNase signal 2 1739 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/90b95fe3-f897-4e68-89a4-c17ffe880a7b/ENCFF287RNZ.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue male adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195GUK Signal\ track wgEncodeReg4Epigenetics_ENCFF287RNZ\ type bigWig\ visibility full\ BCellLineRPMI1788_CNhs10744_ctss_rev Cl:RPMI1788- bigWig b cell line:RPMI1788_CNhs10744_10427-106D4_reverse 0 1740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/b%20cell%20line%3aRPMI1788.CNhs10744.10427-106D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel b cell line:RPMI1788_CNhs10744_10427-106D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10427-106D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RPMI1788-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BCellLineRPMI1788_CNhs10744_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4\ urlLabel FANTOM5 Details:\ BCellLineRPMI1788_CNhs10744_tpm_rev Cl:RPMI1788- bigWig b cell line:RPMI1788_CNhs10744_10427-106D4_reverse 1 1740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/b%20cell%20line%3aRPMI1788.CNhs10744.10427-106D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel b cell line:RPMI1788_CNhs10744_10427-106D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10427-106D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RPMI1788-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BCellLineRPMI1788_CNhs10744_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10427-106D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF302TBP ENCSR098YLE Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM1 PRDM1 peaks 4 1740 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/16548840-a6ac-4f81-86e3-bf82845a8160/ENCFF302TBP.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM1 PRDM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR098YLE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF302TBP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF203FXR ENCSR195JWZ Peak bigBed 5 Gastroesophageal sphincter tissue male adult 54 years H3K27ac peak 4 1740 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f80f3fe2-0784-4af1-a12f-66797a318a9b/ENCFF203FXR.bigBed\ color 181,145,0\ longLabel Gastroesophageal sphincter tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195JWZ Peak\ track wgEncodeReg4Epigenetics_ENCFF203FXR\ type bigBed 5\ visibility squish\ AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_ctss_fwd Cl:RPMI2650+ bigWig anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_forward 0 1741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20squamous%20cell%20carcinoma%20cell%20line%3aRPMI%202650.CNhs11889.10805-111A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10805-111A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RPMI2650+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4\ urlLabel FANTOM5 Details:\ AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_tpm_fwd Cl:RPMI2650+ bigWig anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_forward 1 1741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20squamous%20cell%20carcinoma%20cell%20line%3aRPMI%202650.CNhs11889.10805-111A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10805-111A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RPMI2650+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF727YOU ENCSR098YLE Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM1 PRDM1 ENCSR098YLE signal 2 1741 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ff204b02-fe74-4962-be2b-5dacd89dd16f/ENCFF727YOU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM1 PRDM1 ENCSR098YLE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR098YLE Signal\ track wgEncodeReg4TfChip_ENCFF727YOU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF284NUP ENCSR195JWZ Signal bigWig Gastroesophageal sphincter tissue male adult 54 years H3K27ac signal 2 1741 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/9ffe63fe-286c-41a7-ae48-0fa02cd33c99/ENCFF284NUP.bigWig\ color 181,145,0\ longLabel Gastroesophageal sphincter tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195JWZ Signal\ track wgEncodeReg4Epigenetics_ENCFF284NUP\ type bigWig\ visibility full\ AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_ctss_rev Cl:RPMI2650- bigWig anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_reverse 0 1742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20squamous%20cell%20carcinoma%20cell%20line%3aRPMI%202650.CNhs11889.10805-111A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10805-111A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:RPMI2650-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4\ urlLabel FANTOM5 Details:\ AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_tpm_rev Cl:RPMI2650- bigWig anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_reverse 1 1742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/anaplastic%20squamous%20cell%20carcinoma%20cell%20line%3aRPMI%202650.CNhs11889.10805-111A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel anaplastic squamous cell carcinoma cell line:RPMI 2650_CNhs11889_10805-111A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10805-111A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:RPMI2650-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AnaplasticSquamousCellCarcinomaCellLineRPMI2650_CNhs11889_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10805-111A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF201JKA ENCSR099FCQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF1 USF1 peaks 4 1742 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/0d06051a-c4b8-41b1-a0e1-540299e7e488/ENCFF201JKA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF1 USF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR099FCQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF201JKA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF715WTH ENCSR195ONB Peak bigBed 5 Thyroid gland tissue female adult 53 years DNase peak 4 1742 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/f5d2e76a-7eb0-4b71-a33f-4605b2b9c02e/ENCFF715WTH.bigBed\ color 6,218,147\ labelFields none\ longLabel Thyroid gland tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195ONB Peak\ track wgEncodeReg4Epigenetics_ENCFF715WTH\ type bigBed 5\ visibility squish\ OralSquamousCellCarcinomaCellLineSAS_CNhs11810_ctss_fwd Cl:SAS+ bigWig oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_forward 0 1743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aSAS.CNhs11810.10544-107H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10544-107H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SAS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineSAS_CNhs11810_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineSAS_CNhs11810_tpm_fwd Cl:SAS+ bigWig oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_forward 1 1743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aSAS.CNhs11810.10544-107H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10544-107H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SAS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track OralSquamousCellCarcinomaCellLineSAS_CNhs11810_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF747TZB ENCSR099FCQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF1 USF1 ENCSR099FCQ signal 2 1743 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/e9fd88e3-7c95-4362-9277-d980a86af26b/ENCFF747TZB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF1 USF1 ENCSR099FCQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR099FCQ Signal\ track wgEncodeReg4TfChip_ENCFF747TZB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF047YGB ENCSR195ONB Signal bigWig Thyroid gland tissue female adult 53 years DNase signal 2 1743 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/bb2f9576-8c59-4759-b2d8-6996d76d0b51/ENCFF047YGB.bigWig\ color 6,218,147\ longLabel Thyroid gland tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195ONB Signal\ track wgEncodeReg4Epigenetics_ENCFF047YGB\ type bigWig\ visibility full\ OralSquamousCellCarcinomaCellLineSAS_CNhs11810_ctss_rev Cl:SAS- bigWig oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_reverse 0 1744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aSAS.CNhs11810.10544-107H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10544-107H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SAS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineSAS_CNhs11810_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4\ urlLabel FANTOM5 Details:\ OralSquamousCellCarcinomaCellLineSAS_CNhs11810_tpm_rev Cl:SAS- bigWig oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_reverse 1 1744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/oral%20squamous%20cell%20carcinoma%20cell%20line%3aSAS.CNhs11810.10544-107H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel oral squamous cell carcinoma cell line:SAS_CNhs11810_10544-107H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10544-107H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SAS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track OralSquamousCellCarcinomaCellLineSAS_CNhs11810_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10544-107H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF410JIO ENCSR099MNR Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A ZNF75A peaks 4 1744 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/f8666a4e-4f9d-456c-bb00-a42455c93462/ENCFF410JIO.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A ZNF75A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR099MNR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF410JIO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF906NCV ENCSR195POA Peak bigBed 5 Lower lobe of left lung tissue male adult 60 years CTCF peak 4 1744 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5d808e7f-2edf-48d3-8a36-9ae6811056d6/ENCFF906NCV.bigBed\ color 0,176,240\ labelFields none\ longLabel Lower lobe of left lung tissue male adult 60 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195POA Peak\ track wgEncodeReg4Epigenetics_ENCFF906NCV\ type bigBed 5\ visibility squish\ ChoriocarcinomaCellLineSCH_CNhs11875_ctss_fwd Cl:SCH+ bigWig choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_forward 0 1745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aSCH.CNhs11875.10785-110H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10785-110H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SCH+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChoriocarcinomaCellLineSCH_CNhs11875_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2\ urlLabel FANTOM5 Details:\ ChoriocarcinomaCellLineSCH_CNhs11875_tpm_fwd Cl:SCH+ bigWig choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_forward 1 1745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aSCH.CNhs11875.10785-110H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10785-110H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SCH+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChoriocarcinomaCellLineSCH_CNhs11875_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF651OZY ENCSR099MNR Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A ZNF75A ENCSR099MNR signal 2 1745 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/a749a010-4441-49f4-9f66-9cc488271720/ENCFF651OZY.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF75A ZNF75A ENCSR099MNR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR099MNR Signal\ track wgEncodeReg4TfChip_ENCFF651OZY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF812ODW ENCSR195POA Signal bigWig Lower lobe of left lung tissue male adult 60 years CTCF signal 2 1745 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/76cb5566-e8f3-4dc6-9f59-0296c1163903/ENCFF812ODW.bigWig\ color 0,176,240\ longLabel Lower lobe of left lung tissue male adult 60 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR195POA Signal\ track wgEncodeReg4Epigenetics_ENCFF812ODW\ type bigWig\ visibility full\ ChoriocarcinomaCellLineSCH_CNhs11875_ctss_rev Cl:SCH- bigWig choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_reverse 0 1746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aSCH.CNhs11875.10785-110H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10785-110H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SCH-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineSCH_CNhs11875_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2\ urlLabel FANTOM5 Details:\ ChoriocarcinomaCellLineSCH_CNhs11875_tpm_rev Cl:SCH- bigWig choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_reverse 1 1746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aSCH.CNhs11875.10785-110H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:SCH_CNhs11875_10785-110H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10785-110H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SCH-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineSCH_CNhs11875_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10785-110H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF615YYW ENCSR099NCH Peak bigBed 5 K562 ZNF24 peaks 4 1746 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/0760451c-c889-429d-a0e9-1022ded7110a/ENCFF615YYW.bigBed\ labelFields none\ longLabel K562 ZNF24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR099NCH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF615YYW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF086GTI ENCSR196HOM Peak bigBed 5 Epithelial cell of prostate male CTCF peak 4 1746 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/352c948d-d89c-4780-b3ba-dd7d8e4d1d04/ENCFF086GTI.bigBed\ color 0,176,240\ labelFields none\ longLabel Epithelial cell of prostate male CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR196HOM Peak\ track wgEncodeReg4Epigenetics_ENCFF086GTI\ type bigBed 5\ visibility squish\ NeuroepitheliomaCellLineSKNMC_CNhs11853_ctss_fwd Cl:SK-N-MC+ bigWig neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_forward 0 1747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroepithelioma%20cell%20line%3aSK-N-MC.CNhs11853.10728-110A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10728-110A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-N-MC+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroepitheliomaCellLineSKNMC_CNhs11853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8\ urlLabel FANTOM5 Details:\ NeuroepitheliomaCellLineSKNMC_CNhs11853_tpm_fwd Cl:SK-N-MC+ bigWig neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_forward 1 1747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroepithelioma%20cell%20line%3aSK-N-MC.CNhs11853.10728-110A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10728-110A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-N-MC+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroepitheliomaCellLineSKNMC_CNhs11853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF936KHI ENCSR099NCH Signal bigWig K562 ZNF24 ENCSR099NCH signal 2 1747 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/3cbcea72-fd5f-4968-94f6-972d8627f249/ENCFF936KHI.bigWig\ color 254,75,173\ longLabel K562 ZNF24 ENCSR099NCH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR099NCH Signal\ track wgEncodeReg4TfChip_ENCFF936KHI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF354RCZ ENCSR196HOM Signal bigWig Epithelial cell of prostate male CTCF signal 2 1747 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/87fbdcf0-a7dd-4f7f-924e-9009e915781f/ENCFF354RCZ.bigWig\ color 0,176,240\ longLabel Epithelial cell of prostate male CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR196HOM Signal\ track wgEncodeReg4Epigenetics_ENCFF354RCZ\ type bigWig\ visibility full\ NeuroepitheliomaCellLineSKNMC_CNhs11853_ctss_rev Cl:SK-N-MC- bigWig neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_reverse 0 1748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroepithelioma%20cell%20line%3aSK-N-MC.CNhs11853.10728-110A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10728-110A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-N-MC-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroepitheliomaCellLineSKNMC_CNhs11853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8\ urlLabel FANTOM5 Details:\ NeuroepitheliomaCellLineSKNMC_CNhs11853_tpm_rev Cl:SK-N-MC- bigWig neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_reverse 1 1748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroepithelioma%20cell%20line%3aSK-N-MC.CNhs11853.10728-110A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroepithelioma cell line:SK-N-MC_CNhs11853_10728-110A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10728-110A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-N-MC-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroepitheliomaCellLineSKNMC_CNhs11853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10728-110A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF121ZIF ENCSR100UQX Peak bigBed 5 K562 TAF9B peaks 4 1748 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/595b035b-1630-41a0-8406-05d5016f1118/ENCFF121ZIF.bigBed\ labelFields none\ longLabel K562 TAF9B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR100UQX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF121ZIF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF870FAI ENCSR197BFD Peak bigBed 5 Mesenteric fat pad tissue female adult 59 years DNase peak 4 1748 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/d1b1d908-606c-4ce8-a855-c99345e467a7/ENCFF870FAI.bigBed\ color 6,218,147\ labelFields none\ longLabel Mesenteric fat pad tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197BFD Peak\ track wgEncodeReg4Epigenetics_ENCFF870FAI\ type bigBed 5\ visibility squish\ SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_ctss_fwd Cl:SK-OV-3-RBr1+ bigWig serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_forward 0 1749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%2c%20biol_rep1.CNhs13099.11841-124H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11841-124H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-OV-3-RBr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5\ urlLabel FANTOM5 Details:\ SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_tpm_fwd Cl:SK-OV-3-RBr1+ bigWig serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_forward 1 1749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%2c%20biol_rep1.CNhs13099.11841-124H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11841-124H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-OV-3-RBr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF502JLG ENCSR100UQX Signal bigWig K562 TAF9B ENCSR100UQX signal 2 1749 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/b49085a2-db5c-4352-995e-ccd92e786188/ENCFF502JLG.bigWig\ color 254,75,173\ longLabel K562 TAF9B ENCSR100UQX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR100UQX Signal\ track wgEncodeReg4TfChip_ENCFF502JLG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF170YYM ENCSR197BFD Signal bigWig Mesenteric fat pad tissue female adult 59 years DNase signal 2 1749 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/9d551494-826d-4463-8003-55a79d7690b7/ENCFF170YYM.bigWig\ color 6,218,147\ longLabel Mesenteric fat pad tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197BFD Signal\ track wgEncodeReg4Epigenetics_ENCFF170YYM\ type bigWig\ visibility full\ SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_ctss_rev Cl:SK-OV-3-RBr1- bigWig serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_reverse 0 1750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%2c%20biol_rep1.CNhs13099.11841-124H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11841-124H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-OV-3-RBr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5\ urlLabel FANTOM5 Details:\ SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_tpm_rev Cl:SK-OV-3-RBr1- bigWig serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_reverse 1 1750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%2c%20biol_rep1.CNhs13099.11841-124H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel serous adenocarcinoma cell line:SK-OV-3-R, biol_rep1_CNhs13099_11841-124H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11841-124H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-OV-3-RBr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousAdenocarcinomaCellLineSKOV3RBiolRep1_CNhs13099_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11841-124H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF539DJW ENCSR101FJM Peak bigBed 5 HCT116 ZNF274 peaks 4 1750 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/bda552aa-e32a-46bd-9fe0-480af75aabdb/ENCFF539DJW.bigBed\ labelFields none\ longLabel HCT116 ZNF274 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR101FJM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF539DJW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF464LMM ENCSR197GOQ Peak bigBed 5 K562 treated with 100 nM GSK J4 for 24 hours ATAC peak 4 1750 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/f6bd0b9f-3e42-4e59-b835-903323b3355d/ENCFF464LMM.bigBed\ color 2,199,185\ longLabel K562 treated with 100 nM GSK J4 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197GOQ Peak\ track wgEncodeReg4Epigenetics_ENCFF464LMM\ type bigBed 5\ visibility squish\ SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_ctss_fwd Cl:SK-OV-3-RwithSOC-57-02-GBr1+ bigWig serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_forward 0 1751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%20after%20co-culture%20with%20SOC-57-02-G%2c%20biol_rep1.CNhs13508.11843-124H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11843-124H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-OV-3-RwithSOC-57-02-GBr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7\ urlLabel FANTOM5 Details:\ SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_tpm_fwd Cl:SK-OV-3-RwithSOC-57-02-GBr1+ bigWig serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_forward 1 1751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%20after%20co-culture%20with%20SOC-57-02-G%2c%20biol_rep1.CNhs13508.11843-124H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11843-124H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-OV-3-RwithSOC-57-02-GBr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF457LUQ ENCSR101FJM Signal bigWig HCT116 ZNF274 ENCSR101FJM signal 2 1751 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/27/435a78c6-b822-4313-a44f-8d8364deaa2b/ENCFF457LUQ.bigWig\ color 86,86,36\ longLabel HCT116 ZNF274 ENCSR101FJM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR101FJM Signal\ track wgEncodeReg4TfChip_ENCFF457LUQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF869XBZ ENCSR197GOQ Signal bigWig K562 treated with 100 nM GSK J4 for 24 hours ATAC signal 2 1751 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/eb5553d5-31b6-459a-9d6f-3ae0d9afa252/ENCFF869XBZ.bigWig\ color 2,199,185\ longLabel K562 treated with 100 nM GSK J4 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197GOQ Signal\ track wgEncodeReg4Epigenetics_ENCFF869XBZ\ type bigWig\ visibility full\ SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_ctss_rev Cl:SK-OV-3-RwithSOC-57-02-GBr1- bigWig serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_reverse 0 1752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%20after%20co-culture%20with%20SOC-57-02-G%2c%20biol_rep1.CNhs13508.11843-124H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11843-124H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-OV-3-RwithSOC-57-02-GBr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7\ urlLabel FANTOM5 Details:\ SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_tpm_rev Cl:SK-OV-3-RwithSOC-57-02-GBr1- bigWig serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_reverse 1 1752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/serous%20adenocarcinoma%20cell%20line%3aSK-OV-3-R%20after%20co-culture%20with%20SOC-57-02-G%2c%20biol_rep1.CNhs13508.11843-124H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1_CNhs13508_11843-124H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11843-124H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-OV-3-RwithSOC-57-02-GBr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SerousAdenocarcinomaCellLineSKOV3RAfterCocultureWithSOC5702GBiolRep1_CNhs13508_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11843-124H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF912VVO ENCSR101FJS Peak bigBed 5 HepG2 TBL1XR1 peaks 4 1752 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e49bf52a-b362-4631-accb-1abb121adfd0/ENCFF912VVO.bigBed\ labelFields none\ longLabel HepG2 TBL1XR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR101FJS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF912VVO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962UBR ENCSR197PUB Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 1752 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/3de5bd09-cb8c-4c5e-8aa4-3052d7a2a37e/ENCFF962UBR.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197PUB Peak\ track wgEncodeReg4Epigenetics_ENCFF962UBR\ type bigBed 5\ visibility squish\ CarcinoidCellLineSKPNDW_CNhs11846_ctss_fwd Cl:SK-PN-DW+ bigWig carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_forward 0 1753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aSK-PN-DW.CNhs11846.10719-109I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10719-109I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-PN-DW+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineSKPNDW_CNhs11846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8\ urlLabel FANTOM5 Details:\ CarcinoidCellLineSKPNDW_CNhs11846_tpm_fwd Cl:SK-PN-DW+ bigWig carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_forward 1 1753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aSK-PN-DW.CNhs11846.10719-109I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10719-109I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-PN-DW+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track CarcinoidCellLineSKPNDW_CNhs11846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF802QZE ENCSR101FJS Signal bigWig HepG2 TBL1XR1 ENCSR101FJS signal 2 1753 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/9466bde2-7435-4d0a-9bd8-110e6d6a97f1/ENCFF802QZE.bigWig\ color 137,152,82\ longLabel HepG2 TBL1XR1 ENCSR101FJS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR101FJS Signal\ track wgEncodeReg4TfChip_ENCFF802QZE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF370MPF ENCSR197PUB Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal 2 1753 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/004be709-d74f-4c45-8d27-e9d44aad7585/ENCFF370MPF.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197PUB Signal\ track wgEncodeReg4Epigenetics_ENCFF370MPF\ type bigWig\ visibility full\ CarcinoidCellLineSKPNDW_CNhs11846_ctss_rev Cl:SK-PN-DW- bigWig carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_reverse 0 1754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aSK-PN-DW.CNhs11846.10719-109I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10719-109I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SK-PN-DW-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineSKPNDW_CNhs11846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8\ urlLabel FANTOM5 Details:\ CarcinoidCellLineSKPNDW_CNhs11846_tpm_rev Cl:SK-PN-DW- bigWig carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_reverse 1 1754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/carcinoid%20cell%20line%3aSK-PN-DW.CNhs11846.10719-109I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel carcinoid cell line:SK-PN-DW_CNhs11846_10719-109I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10719-109I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SK-PN-DW-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track CarcinoidCellLineSKPNDW_CNhs11846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10719-109I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF129PLC ENCSR101FJU Peak bigBed 5 HepG2 ZNF384 peaks 4 1754 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/1f7aa5c2-d032-4ab1-90ae-00675cd6100f/ENCFF129PLC.bigBed\ labelFields none\ longLabel HepG2 ZNF384 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR101FJU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF129PLC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF598AMS ENCSR197QDK Peak bigBed 5 Spleen tissue female adult 53 years H3K4me3 peak 4 1754 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/fade3f95-88ba-48e8-8027-67759ac82822/ENCFF598AMS.bigBed\ color 255,0,0\ longLabel Spleen tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197QDK Peak\ track wgEncodeReg4Epigenetics_ENCFF598AMS\ type bigBed 5\ visibility squish\ LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_ctss_fwd Cl:SKG-II-SF+ bigWig large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_forward 0 1755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20non-keratinizing%20squamous%20carcinoma%20cell%20line%3aSKG-II-SF.CNhs11825.10692-109F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10692-109F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SKG-II-SF+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8\ urlLabel FANTOM5 Details:\ LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_tpm_fwd Cl:SKG-II-SF+ bigWig large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_forward 1 1755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20non-keratinizing%20squamous%20carcinoma%20cell%20line%3aSKG-II-SF.CNhs11825.10692-109F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10692-109F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SKG-II-SF+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF344ZEK ENCSR101FJU Signal bigWig HepG2 ZNF384 ENCSR101FJU signal 2 1755 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/1c8f16a8-62c7-4b01-9756-08b9640edc9c/ENCFF344ZEK.bigWig\ color 137,152,82\ longLabel HepG2 ZNF384 ENCSR101FJU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR101FJU Signal\ track wgEncodeReg4TfChip_ENCFF344ZEK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF387XJD ENCSR197QDK Signal bigWig Spleen tissue female adult 53 years H3K4me3 signal 2 1755 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/f9e10be7-16df-4e09-97af-f3b649f731dd/ENCFF387XJD.bigWig\ color 255,0,0\ longLabel Spleen tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197QDK Signal\ track wgEncodeReg4Epigenetics_ENCFF387XJD\ type bigWig\ visibility full\ LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_ctss_rev Cl:SKG-II-SF- bigWig large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_reverse 0 1756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20non-keratinizing%20squamous%20carcinoma%20cell%20line%3aSKG-II-SF.CNhs11825.10692-109F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10692-109F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SKG-II-SF-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8\ urlLabel FANTOM5 Details:\ LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_tpm_rev Cl:SKG-II-SF- bigWig large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_reverse 1 1756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/large%20cell%20non-keratinizing%20squamous%20carcinoma%20cell%20line%3aSKG-II-SF.CNhs11825.10692-109F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF_CNhs11825_10692-109F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10692-109F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SKG-II-SF-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LargeCellNonkeratinizingSquamousCarcinomaCellLineSKGIISF_CNhs11825_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10692-109F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF753AMV ENCSR102CSD Peak bigBed 5 Transverse colon tissue male adult (37 years) CTCF peaks 4 1756 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/08/11/3a073d30-daa7-4856-bb3a-05bb8226fd4d/ENCFF753AMV.bigBed\ labelFields none\ longLabel Transverse colon tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR102CSD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF753AMV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF025EPO ENCSR197UDN Peak bigBed 5 CD14-positive monocyte male adult 51 years H3K27ac peak 4 1756 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/6f202dff-b538-4cc8-82ec-776da40b2435/ENCFF025EPO.bigBed\ color 181,145,0\ longLabel CD14-positive monocyte male adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197UDN Peak\ track wgEncodeReg4Epigenetics_ENCFF025EPO\ type bigBed 5\ visibility squish\ MyelodysplasticSyndromeCellLineSKM1_CNhs11934_ctss_fwd Cl:SKM-1+ bigWig myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_forward 0 1757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myelodysplastic%20syndrome%20cell%20line%3aSKM-1.CNhs11934.10772-110F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10772-110F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SKM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyelodysplasticSyndromeCellLineSKM1_CNhs11934_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7\ urlLabel FANTOM5 Details:\ MyelodysplasticSyndromeCellLineSKM1_CNhs11934_tpm_fwd Cl:SKM-1+ bigWig myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_forward 1 1757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myelodysplastic%20syndrome%20cell%20line%3aSKM-1.CNhs11934.10772-110F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10772-110F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SKM-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track MyelodysplasticSyndromeCellLineSKM1_CNhs11934_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF170KVV ENCSR102CSD Signal bigWig Transverse colon tissue male adult (37 years) CTCF ENCSR102CSD signal 2 1757 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/df226baf-6a3c-4a9e-9122-43c2e0b670b0/ENCFF170KVV.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (37 years) CTCF ENCSR102CSD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR102CSD Signal\ track wgEncodeReg4TfChip_ENCFF170KVV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF171ZHJ ENCSR197UDN Signal bigWig CD14-positive monocyte male adult 51 years H3K27ac signal 2 1757 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/3200dd9c-ffd3-4026-8c68-835717a2a465/ENCFF171ZHJ.bigWig\ color 181,145,0\ longLabel CD14-positive monocyte male adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197UDN Signal\ track wgEncodeReg4Epigenetics_ENCFF171ZHJ\ type bigWig\ visibility full\ MyelodysplasticSyndromeCellLineSKM1_CNhs11934_ctss_rev Cl:SKM-1- bigWig myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_reverse 0 1758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myelodysplastic%20syndrome%20cell%20line%3aSKM-1.CNhs11934.10772-110F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10772-110F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SKM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyelodysplasticSyndromeCellLineSKM1_CNhs11934_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7\ urlLabel FANTOM5 Details:\ MyelodysplasticSyndromeCellLineSKM1_CNhs11934_tpm_rev Cl:SKM-1- bigWig myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_reverse 1 1758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/myelodysplastic%20syndrome%20cell%20line%3aSKM-1.CNhs11934.10772-110F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel myelodysplastic syndrome cell line:SKM-1_CNhs11934_10772-110F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10772-110F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SKM-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track MyelodysplasticSyndromeCellLineSKM1_CNhs11934_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10772-110F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF361LXT ENCSR102KIN Peak bigBed 5 K562 ZMYM3 peaks 4 1758 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/d837ac91-95b0-48f6-bd43-b12406407198/ENCFF361LXT.bigBed\ labelFields none\ longLabel K562 ZMYM3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR102KIN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF361LXT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF275QFN ENCSR197ZNW Peak bigBed 5 T-helper 2 cell male adult 24 years DNase peak 4 1758 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/b4350dc3-4571-46d3-911d-492e6d08b8eb/ENCFF275QFN.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 2 cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197ZNW Peak\ track wgEncodeReg4Epigenetics_ENCFF275QFN\ type bigBed 5\ visibility squish\ ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_ctss_fwd Cl:SKW-3+ bigWig chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_forward 0 1759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20lymphocytic%20leukemia%20%28T-CLL%29%20cell%20line%3aSKW-3.CNhs11714.10416-106C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10416-106C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SKW-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2\ urlLabel FANTOM5 Details:\ ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_tpm_fwd Cl:SKW-3+ bigWig chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_forward 1 1759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20lymphocytic%20leukemia%20%28T-CLL%29%20cell%20line%3aSKW-3.CNhs11714.10416-106C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10416-106C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SKW-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF868XEZ ENCSR102KIN Signal bigWig K562 ZMYM3 ENCSR102KIN signal 2 1759 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/f301bb5e-6cb6-47ce-9919-96634dc1382f/ENCFF868XEZ.bigWig\ color 254,75,173\ longLabel K562 ZMYM3 ENCSR102KIN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR102KIN Signal\ track wgEncodeReg4TfChip_ENCFF868XEZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF566TQY ENCSR197ZNW Signal bigWig T-helper 2 cell male adult 24 years DNase signal 2 1759 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/53d6cbfb-2751-4341-9b50-cae6a9db52e8/ENCFF566TQY.bigWig\ color 6,218,147\ longLabel T-helper 2 cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR197ZNW Signal\ track wgEncodeReg4Epigenetics_ENCFF566TQY\ type bigWig\ visibility full\ ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_ctss_rev Cl:SKW-3- bigWig chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_reverse 0 1760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20lymphocytic%20leukemia%20%28T-CLL%29%20cell%20line%3aSKW-3.CNhs11714.10416-106C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10416-106C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SKW-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2\ urlLabel FANTOM5 Details:\ ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_tpm_rev Cl:SKW-3- bigWig chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_reverse 1 1760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chronic%20lymphocytic%20leukemia%20%28T-CLL%29%20cell%20line%3aSKW-3.CNhs11714.10416-106C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chronic lymphocytic leukemia (T-CLL) cell line:SKW-3_CNhs11714_10416-106C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10416-106C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SKW-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChronicLymphocyticLeukemiaTCLLCellLineSKW3_CNhs11714_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10416-106C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF030SRU ENCSR103SZL Peak bigBed 5 HepG2 TFAP4 peaks 4 1760 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/2f35ec78-e94d-4be6-afc6-91a3c0779a9a/ENCFF030SRU.bigBed\ labelFields none\ longLabel HepG2 TFAP4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR103SZL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF030SRU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF550AZV ENCSR198JXW Peak bigBed 5 Muscle of leg tissue female embryo 85 days DNase peak 4 1760 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/0851f2b0-7b41-41e8-9e97-6a5b33794d14/ENCFF550AZV.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue female embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR198JXW Peak\ track wgEncodeReg4Epigenetics_ENCFF550AZV\ type bigBed 5\ visibility squish\ SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_ctss_fwd Cl:SLVL+ bigWig splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_forward 0 1761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/splenic%20lymphoma%20with%20villous%20lymphocytes%20cell%20line%3aSLVL.CNhs10741.10424-106D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10424-106D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SLVL+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1\ urlLabel FANTOM5 Details:\ SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_tpm_fwd Cl:SLVL+ bigWig splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_forward 1 1761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/splenic%20lymphoma%20with%20villous%20lymphocytes%20cell%20line%3aSLVL.CNhs10741.10424-106D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10424-106D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SLVL+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF415UKC ENCSR103SZL Signal bigWig HepG2 TFAP4 ENCSR103SZL signal 2 1761 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/bb1e73d5-70ef-404d-b883-33f4f25b2e24/ENCFF415UKC.bigWig\ color 137,152,82\ longLabel HepG2 TFAP4 ENCSR103SZL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR103SZL Signal\ track wgEncodeReg4TfChip_ENCFF415UKC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF478TKF ENCSR198JXW Signal bigWig Muscle of leg tissue female embryo 85 days DNase signal 2 1761 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/a21ba5b1-76aa-48b9-b889-da50066cbdd7/ENCFF478TKF.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue female embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR198JXW Signal\ track wgEncodeReg4Epigenetics_ENCFF478TKF\ type bigWig\ visibility full\ SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_ctss_rev Cl:SLVL- bigWig splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_reverse 0 1762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/splenic%20lymphoma%20with%20villous%20lymphocytes%20cell%20line%3aSLVL.CNhs10741.10424-106D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10424-106D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SLVL-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1\ urlLabel FANTOM5 Details:\ SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_tpm_rev Cl:SLVL- bigWig splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_reverse 1 1762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/splenic%20lymphoma%20with%20villous%20lymphocytes%20cell%20line%3aSLVL.CNhs10741.10424-106D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel splenic lymphoma with villous lymphocytes cell line:SLVL_CNhs10741_10424-106D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10424-106D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SLVL-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SplenicLymphomaWithVillousLymphocytesCellLineSLVL_CNhs10741_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10424-106D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF081DTE ENCSR103UPR Peak bigBed 5 Gastrocnemius medialis tissue female adult (53 years) POLR2A peaks 4 1762 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/2917df83-c087-4d72-bc70-bb01c72f06d2/ENCFF081DTE.bigBed\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR103UPR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF081DTE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF529JHG ENCSR198UKY Peak bigBed 5 T-cell male adult 47 years DNase peak 4 1762 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/31327a6c-1ecb-4c17-afc6-2c3fa4ef207c/ENCFF529JHG.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR198UKY Peak\ track wgEncodeReg4Epigenetics_ENCFF529JHG\ type bigBed 5\ visibility squish\ PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_ctss_fwd Cl:SNU-387+ bigWig pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_forward 0 1763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pleomorphic%20hepatocellular%20carcinoma%20cell%20line%3aSNU-387.CNhs11933.10706-109H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10706-109H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SNU-387+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4\ urlLabel FANTOM5 Details:\ PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_tpm_fwd Cl:SNU-387+ bigWig pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_forward 1 1763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pleomorphic%20hepatocellular%20carcinoma%20cell%20line%3aSNU-387.CNhs11933.10706-109H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10706-109H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SNU-387+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF211UMX ENCSR103UPR Signal bigWig Gastrocnemius medialis tissue female adult (53 years) POLR2A ENCSR103UPR signal 2 1763 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/a8c77066-d17c-4f64-a1e0-ed8c6e89d834/ENCFF211UMX.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (53 years) POLR2A ENCSR103UPR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR103UPR Signal\ track wgEncodeReg4TfChip_ENCFF211UMX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF156UHI ENCSR198UKY Signal bigWig T-cell male adult 47 years DNase signal 2 1763 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/c47686b9-4aa5-4096-9fb9-014166036802/ENCFF156UHI.bigWig\ color 6,218,147\ longLabel T-cell male adult 47 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR198UKY Signal\ track wgEncodeReg4Epigenetics_ENCFF156UHI\ type bigWig\ visibility full\ PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_ctss_rev Cl:SNU-387- bigWig pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_reverse 0 1764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pleomorphic%20hepatocellular%20carcinoma%20cell%20line%3aSNU-387.CNhs11933.10706-109H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10706-109H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SNU-387-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4\ urlLabel FANTOM5 Details:\ PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_tpm_rev Cl:SNU-387- bigWig pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_reverse 1 1764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pleomorphic%20hepatocellular%20carcinoma%20cell%20line%3aSNU-387.CNhs11933.10706-109H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pleomorphic hepatocellular carcinoma cell line:SNU-387_CNhs11933_10706-109H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10706-109H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SNU-387-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PleomorphicHepatocellularCarcinomaCellLineSNU387_CNhs11933_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10706-109H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF799ATK ENCSR106EBH Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF366 ZNF366 peaks 4 1764 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/df8c34be-b9e5-40f3-a0a3-2cae79c8a78f/ENCFF799ATK.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF366 ZNF366 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR106EBH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF799ATK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF985ONU ENCSR200BNM Peak bigBed 5 Head of caudate nucleus tissue male adult 71 years DNase peak 4 1764 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/07ce7b0c-98b5-457f-90df-0ed4344bdf08/ENCFF985ONU.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 71 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200BNM Peak\ track wgEncodeReg4Epigenetics_ENCFF985ONU\ type bigBed 5\ visibility squish\ LensEpithelialCellLineSRA0104_CNhs11750_ctss_fwd Cl:SRA01/04+ bigWig lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_forward 0 1765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lens%20epithelial%20cell%20line%3aSRA%2001%2004.CNhs11750.10647-109A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10647-109A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SRA01/04+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LensEpithelialCellLineSRA0104_CNhs11750_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8\ urlLabel FANTOM5 Details:\ LensEpithelialCellLineSRA0104_CNhs11750_tpm_fwd Cl:SRA01/04+ bigWig lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_forward 1 1765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lens%20epithelial%20cell%20line%3aSRA%2001%2004.CNhs11750.10647-109A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10647-109A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SRA01/04+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LensEpithelialCellLineSRA0104_CNhs11750_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF852QJY ENCSR106EBH Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF366 ZNF366 ENCSR106EBH signal 2 1765 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/130ab03b-cedd-4fdb-9cf9-e78dfae7424c/ENCFF852QJY.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF366 ZNF366 ENCSR106EBH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR106EBH Signal\ track wgEncodeReg4TfChip_ENCFF852QJY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF520QRU ENCSR200BNM Signal bigWig Head of caudate nucleus tissue male adult 71 years DNase signal 2 1765 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/c8d72a73-1c9e-484b-9636-5b20f6617bde/ENCFF520QRU.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 71 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200BNM Signal\ track wgEncodeReg4Epigenetics_ENCFF520QRU\ type bigWig\ visibility full\ LensEpithelialCellLineSRA0104_CNhs11750_ctss_rev Cl:SRA01/04- bigWig lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_reverse 0 1766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lens%20epithelial%20cell%20line%3aSRA%2001%2004.CNhs11750.10647-109A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10647-109A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SRA01/04-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LensEpithelialCellLineSRA0104_CNhs11750_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8\ urlLabel FANTOM5 Details:\ LensEpithelialCellLineSRA0104_CNhs11750_tpm_rev Cl:SRA01/04- bigWig lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_reverse 1 1766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lens%20epithelial%20cell%20line%3aSRA%2001%2004.CNhs11750.10647-109A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lens epithelial cell line:SRA 01/04_CNhs11750_10647-109A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10647-109A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SRA01/04-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LensEpithelialCellLineSRA0104_CNhs11750_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10647-109A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF620GMX ENCSR106FRG Peak bigBed 5 K562 TAL1 peaks 4 1766 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/096d493a-607f-44aa-9569-514d31957141/ENCFF620GMX.bigBed\ labelFields none\ longLabel K562 TAL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR106FRG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF620GMX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF903GQD ENCSR200ETW Peak bigBed 5 Endodermal cell originated from HUES64 H3K27ac peak 4 1766 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9b52b4d7-cc99-4ee9-937b-c4faf3c1bac7/ENCFF903GQD.bigBed\ color 181,145,0\ longLabel Endodermal cell originated from HUES64 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200ETW Peak\ track wgEncodeReg4Epigenetics_ENCFF903GQD\ type bigBed 5\ visibility squish\ BoneMarrowStromalCellLineStromaNKtert_CNhs11931_ctss_fwd Cl:StromaNKtert+ bigWig bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_forward 0 1767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%20stromal%20cell%20line%3aStromaNKtert.CNhs11931.10686-109F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10686-109F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:StromaNKtert+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BoneMarrowStromalCellLineStromaNKtert_CNhs11931_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2\ urlLabel FANTOM5 Details:\ BoneMarrowStromalCellLineStromaNKtert_CNhs11931_tpm_fwd Cl:StromaNKtert+ bigWig bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_forward 1 1767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%20stromal%20cell%20line%3aStromaNKtert.CNhs11931.10686-109F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10686-109F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:StromaNKtert+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BoneMarrowStromalCellLineStromaNKtert_CNhs11931_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF716BYY ENCSR106FRG Signal bigWig K562 TAL1 ENCSR106FRG signal 2 1767 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/174f12ed-21d8-4785-9ee8-11ff6aaf478c/ENCFF716BYY.bigWig\ color 254,75,173\ longLabel K562 TAL1 ENCSR106FRG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR106FRG Signal\ track wgEncodeReg4TfChip_ENCFF716BYY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF156YLW ENCSR200ETW Signal bigWig Endodermal cell originated from HUES64 H3K27ac signal 2 1767 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f8ab2577-0ce5-49e9-8fcf-e5a487ab2476/ENCFF156YLW.bigWig\ color 181,145,0\ longLabel Endodermal cell originated from HUES64 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200ETW Signal\ track wgEncodeReg4Epigenetics_ENCFF156YLW\ type bigWig\ visibility full\ BoneMarrowStromalCellLineStromaNKtert_CNhs11931_ctss_rev Cl:StromaNKtert- bigWig bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_reverse 0 1768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%20stromal%20cell%20line%3aStromaNKtert.CNhs11931.10686-109F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10686-109F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:StromaNKtert-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BoneMarrowStromalCellLineStromaNKtert_CNhs11931_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2\ urlLabel FANTOM5 Details:\ BoneMarrowStromalCellLineStromaNKtert_CNhs11931_tpm_rev Cl:StromaNKtert- bigWig bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_reverse 1 1768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%20stromal%20cell%20line%3aStromaNKtert.CNhs11931.10686-109F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bone marrow stromal cell line:StromaNKtert_CNhs11931_10686-109F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10686-109F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:StromaNKtert-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BoneMarrowStromalCellLineStromaNKtert_CNhs11931_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10686-109F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF449PID ENCSR106GVM Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens SNAI2 treated with 6 μM all-trans-retinoic acid for 48 hours SNAI2 peaks 4 1768 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/065c4b4f-2d1c-4af6-979e-1eb2fa5ba82c/ENCFF449PID.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens SNAI2 treated with 6 μM all-trans-retinoic acid for 48 hours SNAI2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR106GVM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF449PID\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF404SAH ENCSR200JVJ Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue male adult 89 years H3K27ac peak 4 1768 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/9f2b2894-629e-439a-88bf-7a6d75ea6d17/ENCFF404SAH.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 89 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR200JVJ Peak\ track wgEncodeReg4Epigenetics_ENCFF404SAH\ type bigBed 5\ visibility squish\ TubularAdenocarcinomaCellLineSUIT2_CNhs11883_ctss_fwd Cl:SUIT-2+ bigWig tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_forward 0 1769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tubular%20adenocarcinoma%20cell%20line%3aSUIT-2.CNhs11883.10797-110I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10797-110I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SUIT-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TubularAdenocarcinomaCellLineSUIT2_CNhs11883_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5\ urlLabel FANTOM5 Details:\ TubularAdenocarcinomaCellLineSUIT2_CNhs11883_tpm_fwd Cl:SUIT-2+ bigWig tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_forward 1 1769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tubular%20adenocarcinoma%20cell%20line%3aSUIT-2.CNhs11883.10797-110I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10797-110I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SUIT-2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track TubularAdenocarcinomaCellLineSUIT2_CNhs11883_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF587WIH ENCSR106GVM Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens SNAI2 treated with 6 μM all-trans-retinoic acid for 48 hours SNAI2 ENCSR106GVM signal 2 1769 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/2e3c09d5-e5fc-40e1-ac13-57a315dbfb7a/ENCFF587WIH.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens SNAI2 treated with 6 μM all-trans-retinoic acid for 48 hours SNAI2 ENCSR106GVM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR106GVM Signal\ track wgEncodeReg4TfChip_ENCFF587WIH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF137KZR ENCSR200JVJ Signal bigWig Mild cognitive impairment middle frontal area 46 tissue male adult 89 years H3K27ac signal 2 1769 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/051e1e71-068a-44b2-8a9f-b18442c42821/ENCFF137KZR.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 89 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR200JVJ Signal\ track wgEncodeReg4Epigenetics_ENCFF137KZR\ type bigWig\ visibility full\ TubularAdenocarcinomaCellLineSUIT2_CNhs11883_ctss_rev Cl:SUIT-2- bigWig tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_reverse 0 1770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tubular%20adenocarcinoma%20cell%20line%3aSUIT-2.CNhs11883.10797-110I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10797-110I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SUIT-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TubularAdenocarcinomaCellLineSUIT2_CNhs11883_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5\ urlLabel FANTOM5 Details:\ TubularAdenocarcinomaCellLineSUIT2_CNhs11883_tpm_rev Cl:SUIT-2- bigWig tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_reverse 1 1770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tubular%20adenocarcinoma%20cell%20line%3aSUIT-2.CNhs11883.10797-110I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tubular adenocarcinoma cell line:SUIT-2_CNhs11883_10797-110I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10797-110I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SUIT-2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track TubularAdenocarcinomaCellLineSUIT2_CNhs11883_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10797-110I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF203CWF ENCSR107DKT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP140L SP140L peaks 4 1770 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/64219f86-756b-44ec-b6df-7c4de6df90a5/ENCFF203CWF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP140L SP140L peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR107DKT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF203CWF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF423EBL ENCSR200OML Peak bigBed 5 IMR-90 nuclear fraction and unspecified fraction ATAC peak 4 1770 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/a2068bd6-a1cc-4677-85db-8a9859893770/ENCFF423EBL.bigBed\ color 2,199,185\ longLabel IMR-90 nuclear fraction and unspecified fraction ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200OML Peak\ track wgEncodeReg4Epigenetics_ENCFF423EBL\ type bigBed 5\ visibility squish\ AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_ctss_fwd Cl:SW-13+ bigWig adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_forward 0 1771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20cortex%20adenocarcinoma%20cell%20line%3aSW-13.CNhs11893.10810-111A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10810-111A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW-13+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9\ urlLabel FANTOM5 Details:\ AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_tpm_fwd Cl:SW-13+ bigWig adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_forward 1 1771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20cortex%20adenocarcinoma%20cell%20line%3aSW-13.CNhs11893.10810-111A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10810-111A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW-13+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF304BEJ ENCSR107DKT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP140L SP140L ENCSR107DKT signal 2 1771 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/f347ab51-06ce-49bc-a67d-62e8eb627619/ENCFF304BEJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP140L SP140L ENCSR107DKT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR107DKT Signal\ track wgEncodeReg4TfChip_ENCFF304BEJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF282RNO ENCSR200OML Signal bigWig IMR-90 nuclear fraction and unspecified fraction ATAC signal 2 1771 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/4dd00198-47b5-4ac6-9ac1-f11e2804800c/ENCFF282RNO.bigWig\ color 2,199,185\ longLabel IMR-90 nuclear fraction and unspecified fraction ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200OML Signal\ track wgEncodeReg4Epigenetics_ENCFF282RNO\ type bigWig\ visibility full\ AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_ctss_rev Cl:SW-13- bigWig adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_reverse 0 1772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20cortex%20adenocarcinoma%20cell%20line%3aSW-13.CNhs11893.10810-111A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10810-111A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW-13-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9\ urlLabel FANTOM5 Details:\ AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_tpm_rev Cl:SW-13- bigWig adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_reverse 1 1772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20cortex%20adenocarcinoma%20cell%20line%3aSW-13.CNhs11893.10810-111A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adrenal cortex adenocarcinoma cell line:SW-13_CNhs11893_10810-111A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10810-111A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW-13-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AdrenalCortexAdenocarcinomaCellLineSW13_CNhs11893_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10810-111A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF964EQU ENCSR107EUS Peak bigBed 5 Transverse colon tissue female adult (53 years) POLR2A peaks 4 1772 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/c767596a-c8e5-4dbf-ab3d-72457ca52365/ENCFF964EQU.bigBed\ labelFields none\ longLabel Transverse colon tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR107EUS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF964EQU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF739ICB ENCSR200SSJ Peak bigBed 5 Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac peak 4 1772 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/3a26ae92-2367-48e0-a0b0-136262c78b2f/ENCFF739ICB.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200SSJ Peak\ track wgEncodeReg4Epigenetics_ENCFF739ICB\ type bigBed 5\ visibility squish\ ChondrosarcomaCellLineSW1353_CNhs11833_ctss_fwd Cl:SW1353+ bigWig chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_forward 0 1773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chondrosarcoma%20cell%20line%3aSW%201353.CNhs11833.10700-109G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10700-109G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW1353+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChondrosarcomaCellLineSW1353_CNhs11833_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7\ urlLabel FANTOM5 Details:\ ChondrosarcomaCellLineSW1353_CNhs11833_tpm_fwd Cl:SW1353+ bigWig chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_forward 1 1773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chondrosarcoma%20cell%20line%3aSW%201353.CNhs11833.10700-109G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10700-109G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW1353+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChondrosarcomaCellLineSW1353_CNhs11833_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF690XUV ENCSR107EUS Signal bigWig Transverse colon tissue female adult (53 years) POLR2A ENCSR107EUS signal 2 1773 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/29/58fe0241-83fe-4b40-a875-9090e1634372/ENCFF690XUV.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (53 years) POLR2A ENCSR107EUS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR107EUS Signal\ track wgEncodeReg4TfChip_ENCFF690XUV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF893MAP ENCSR200SSJ Signal bigWig Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac signal 2 1773 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/2d311789-6b59-47cc-b9a1-e8285c26fb23/ENCFF893MAP.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR200SSJ Signal\ track wgEncodeReg4Epigenetics_ENCFF893MAP\ type bigWig\ visibility full\ ChondrosarcomaCellLineSW1353_CNhs11833_ctss_rev Cl:SW1353- bigWig chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_reverse 0 1774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chondrosarcoma%20cell%20line%3aSW%201353.CNhs11833.10700-109G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10700-109G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW1353-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChondrosarcomaCellLineSW1353_CNhs11833_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7\ urlLabel FANTOM5 Details:\ ChondrosarcomaCellLineSW1353_CNhs11833_tpm_rev Cl:SW1353- bigWig chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_reverse 1 1774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chondrosarcoma%20cell%20line%3aSW%201353.CNhs11833.10700-109G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chondrosarcoma cell line:SW 1353_CNhs11833_10700-109G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10700-109G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW1353-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChondrosarcomaCellLineSW1353_CNhs11833_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10700-109G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF074XRJ ENCSR107GRP Peak bigBed 5 K562 MLLT1 peaks 4 1774 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/34f75d51-6188-4609-b0c8-7c6bb1e770d6/ENCFF074XRJ.bigBed\ labelFields none\ longLabel K562 MLLT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR107GRP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF074XRJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF413XCR ENCSR201FIW Peak bigBed 5 Thyroid gland tissue female adult 51 years ATAC peak 4 1774 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/6acceb90-7aa5-43e6-a478-c83d6e38482f/ENCFF413XCR.bigBed\ color 2,199,185\ longLabel Thyroid gland tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR201FIW Peak\ track wgEncodeReg4Epigenetics_ENCFF413XCR\ type bigBed 5\ visibility squish\ AlveolarCellCarcinomaCellLineSW1573_CNhs11838_ctss_fwd Cl:SW1573+ bigWig alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_forward 0 1775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/alveolar%20cell%20carcinoma%20cell%20line%3aSW%201573.CNhs11838.10708-109H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10708-109H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW1573+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AlveolarCellCarcinomaCellLineSW1573_CNhs11838_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6\ urlLabel FANTOM5 Details:\ AlveolarCellCarcinomaCellLineSW1573_CNhs11838_tpm_fwd Cl:SW1573+ bigWig alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_forward 1 1775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/alveolar%20cell%20carcinoma%20cell%20line%3aSW%201573.CNhs11838.10708-109H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10708-109H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW1573+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AlveolarCellCarcinomaCellLineSW1573_CNhs11838_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF168DCY ENCSR107GRP Signal bigWig K562 MLLT1 ENCSR107GRP signal 2 1775 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/7b36b542-dfd2-4a2b-a1af-0b574764ceed/ENCFF168DCY.bigWig\ color 254,75,173\ longLabel K562 MLLT1 ENCSR107GRP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR107GRP Signal\ track wgEncodeReg4TfChip_ENCFF168DCY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF747TGQ ENCSR201FIW Signal bigWig Thyroid gland tissue female adult 51 years ATAC signal 2 1775 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/07e23f46-67c0-4189-843f-e12a39a30964/ENCFF747TGQ.bigWig\ color 2,199,185\ longLabel Thyroid gland tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR201FIW Signal\ track wgEncodeReg4Epigenetics_ENCFF747TGQ\ type bigWig\ visibility full\ AlveolarCellCarcinomaCellLineSW1573_CNhs11838_ctss_rev Cl:SW1573- bigWig alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_reverse 0 1776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/alveolar%20cell%20carcinoma%20cell%20line%3aSW%201573.CNhs11838.10708-109H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10708-109H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW1573-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AlveolarCellCarcinomaCellLineSW1573_CNhs11838_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6\ urlLabel FANTOM5 Details:\ AlveolarCellCarcinomaCellLineSW1573_CNhs11838_tpm_rev Cl:SW1573- bigWig alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_reverse 1 1776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/alveolar%20cell%20carcinoma%20cell%20line%3aSW%201573.CNhs11838.10708-109H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel alveolar cell carcinoma cell line:SW 1573_CNhs11838_10708-109H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10708-109H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW1573-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AlveolarCellCarcinomaCellLineSW1573_CNhs11838_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10708-109H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF938KYA ENCSR108MKR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MNX1 MNX1 peaks 4 1776 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/9563f02e-2875-4c34-a26f-1850faf02d6e/ENCFF938KYA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MNX1 MNX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR108MKR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF938KYA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF324STE ENCSR202RXT Peak bigBed 5 Stomach tissue female embryo 98 days H3K4me3 peak 4 1776 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/fdf378a6-252f-492d-8eff-9d54495640e5/ENCFF324STE.bigBed\ color 255,0,0\ longLabel Stomach tissue female embryo 98 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR202RXT Peak\ track wgEncodeReg4Epigenetics_ENCFF324STE\ type bigBed 5\ visibility squish\ LiposarcomaCellLineSW872_CNhs11851_ctss_fwd Cl:SW872+ bigWig liposarcoma cell line:SW 872_CNhs11851_10726-110A6_forward 0 1777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aSW%20872.CNhs11851.10726-110A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel liposarcoma cell line:SW 872_CNhs11851_10726-110A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10726-110A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW872+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LiposarcomaCellLineSW872_CNhs11851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6\ urlLabel FANTOM5 Details:\ LiposarcomaCellLineSW872_CNhs11851_tpm_fwd Cl:SW872+ bigWig liposarcoma cell line:SW 872_CNhs11851_10726-110A6_forward 1 1777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aSW%20872.CNhs11851.10726-110A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel liposarcoma cell line:SW 872_CNhs11851_10726-110A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10726-110A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW872+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track LiposarcomaCellLineSW872_CNhs11851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF044OVE ENCSR108TYQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATAD1 GATAD1 peaks 4 1777 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/de2c75be-5075-41f0-9602-b55d6d559ee7/ENCFF044OVE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATAD1 GATAD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR108TYQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF044OVE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF538GPP ENCSR202RXT Signal bigWig Stomach tissue female embryo 98 days H3K4me3 signal 2 1777 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e27a0c31-f590-4070-bfd6-6435e754b035/ENCFF538GPP.bigWig\ color 255,0,0\ longLabel Stomach tissue female embryo 98 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR202RXT Signal\ track wgEncodeReg4Epigenetics_ENCFF538GPP\ type bigWig\ visibility full\ LiposarcomaCellLineSW872_CNhs11851_ctss_rev Cl:SW872- bigWig liposarcoma cell line:SW 872_CNhs11851_10726-110A6_reverse 0 1778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aSW%20872.CNhs11851.10726-110A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel liposarcoma cell line:SW 872_CNhs11851_10726-110A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10726-110A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:SW872-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LiposarcomaCellLineSW872_CNhs11851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6\ urlLabel FANTOM5 Details:\ LiposarcomaCellLineSW872_CNhs11851_tpm_rev Cl:SW872- bigWig liposarcoma cell line:SW 872_CNhs11851_10726-110A6_reverse 1 1778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liposarcoma%20cell%20line%3aSW%20872.CNhs11851.10726-110A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel liposarcoma cell line:SW 872_CNhs11851_10726-110A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10726-110A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:SW872-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track LiposarcomaCellLineSW872_CNhs11851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10726-110A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF402VBA ENCSR108TYQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATAD1 GATAD1 ENCSR108TYQ signal 2 1778 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/21dafb41-0641-43f8-b27e-1320f822aa44/ENCFF402VBA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATAD1 GATAD1 ENCSR108TYQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR108TYQ Signal\ track wgEncodeReg4TfChip_ENCFF402VBA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF898TZZ ENCSR203KCB Peak bigBed 5 Thyroid gland tissue male adult 54 years H3K27ac peak 4 1778 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/079e545a-da55-494c-8e1d-d36b646f336b/ENCFF898TZZ.bigBed\ color 181,145,0\ longLabel Thyroid gland tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR203KCB Peak\ track wgEncodeReg4Epigenetics_ENCFF898TZZ\ type bigBed 5\ visibility squish\ ChoriocarcinomaCellLineT3M3_CNhs11820_ctss_fwd Cl:T3M-3+ bigWig choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_forward 0 1779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aT3M-3.CNhs11820.10618-108G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10618-108G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:T3M-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChoriocarcinomaCellLineT3M3_CNhs11820_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6\ urlLabel FANTOM5 Details:\ ChoriocarcinomaCellLineT3M3_CNhs11820_tpm_fwd Cl:T3M-3+ bigWig choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_forward 1 1779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aT3M-3.CNhs11820.10618-108G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10618-108G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:T3M-3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ChoriocarcinomaCellLineT3M3_CNhs11820_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF537SCW ENCSR109ODF Peak bigBed 5 MCF-7 HES1 peaks 4 1779 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/83ee070e-f756-4702-ba06-3d91fcd00afe/ENCFF537SCW.bigBed\ labelFields none\ longLabel MCF-7 HES1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR109ODF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF537SCW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF573DJV ENCSR203KCB Signal bigWig Thyroid gland tissue male adult 54 years H3K27ac signal 2 1779 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/b07f9d37-f03c-47d5-bd4a-218d286843c9/ENCFF573DJV.bigWig\ color 181,145,0\ longLabel Thyroid gland tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR203KCB Signal\ track wgEncodeReg4Epigenetics_ENCFF573DJV\ type bigWig\ visibility full\ ChoriocarcinomaCellLineT3M3_CNhs11820_ctss_rev Cl:T3M-3- bigWig choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_reverse 0 1780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aT3M-3.CNhs11820.10618-108G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10618-108G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:T3M-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineT3M3_CNhs11820_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6\ urlLabel FANTOM5 Details:\ ChoriocarcinomaCellLineT3M3_CNhs11820_tpm_rev Cl:T3M-3- bigWig choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_reverse 1 1780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/choriocarcinoma%20cell%20line%3aT3M-3.CNhs11820.10618-108G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel choriocarcinoma cell line:T3M-3_CNhs11820_10618-108G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10618-108G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:T3M-3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ChoriocarcinomaCellLineT3M3_CNhs11820_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10618-108G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF092JPG ENCSR109ODF Signal bigWig MCF-7 HES1 ENCSR109ODF signal 2 1780 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/d7e514c6-1597-4270-8a95-7cd537226409/ENCFF092JPG.bigWig\ color 65,171,173\ longLabel MCF-7 HES1 ENCSR109ODF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR109ODF Signal\ track wgEncodeReg4TfChip_ENCFF092JPG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF034AVF ENCSR203KEU Peak bigBed 5 RWPE1 H3K27ac peak 4 1780 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/8274abf7-6821-45a0-b50d-9b508f9a923b/ENCFF034AVF.bigBed\ color 181,145,0\ longLabel RWPE1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR203KEU Peak\ track wgEncodeReg4Epigenetics_ENCFF034AVF\ type bigBed 5\ visibility squish\ SquamousCellCarcinomaCellLineT3M5_CNhs11739_ctss_fwd Cl:T3M-5+ bigWig squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_forward 0 1781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aT3M-5.CNhs11739.10616-108G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10616-108G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:T3M-5+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellCarcinomaCellLineT3M5_CNhs11739_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4\ urlLabel FANTOM5 Details:\ SquamousCellCarcinomaCellLineT3M5_CNhs11739_tpm_fwd Cl:T3M-5+ bigWig squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_forward 1 1781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aT3M-5.CNhs11739.10616-108G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10616-108G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:T3M-5+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SquamousCellCarcinomaCellLineT3M5_CNhs11739_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF628RBP ENCSR109SJT Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 peaks 4 1781 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/78d363d0-4388-453a-b63c-7ce02e7349ad/ENCFF628RBP.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR109SJT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF628RBP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644HJX ENCSR203KEU Signal bigWig RWPE1 H3K27ac signal 2 1781 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/2a46d64f-14a3-49c0-8e84-06a7ddb135bd/ENCFF644HJX.bigWig\ color 181,145,0\ longLabel RWPE1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR203KEU Signal\ track wgEncodeReg4Epigenetics_ENCFF644HJX\ type bigWig\ visibility full\ SquamousCellCarcinomaCellLineT3M5_CNhs11739_ctss_rev Cl:T3M-5- bigWig squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_reverse 0 1782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aT3M-5.CNhs11739.10616-108G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10616-108G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:T3M-5-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellCarcinomaCellLineT3M5_CNhs11739_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4\ urlLabel FANTOM5 Details:\ SquamousCellCarcinomaCellLineT3M5_CNhs11739_tpm_rev Cl:T3M-5- bigWig squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_reverse 1 1782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/squamous%20cell%20carcinoma%20cell%20line%3aT3M-5.CNhs11739.10616-108G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel squamous cell carcinoma cell line:T3M-5_CNhs11739_10616-108G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10616-108G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:T3M-5-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SquamousCellCarcinomaCellLineT3M5_CNhs11739_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10616-108G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF836SJA ENCSR109SJT Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 ENCSR109SJT signal 2 1782 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/f176bbc6-cc4c-48e9-a844-443df24ad9eb/ENCFF836SJA.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 ENCSR109SJT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR109SJT Signal\ track wgEncodeReg4TfChip_ENCFF836SJA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF056JQX ENCSR203QEB Peak bigBed 5 Panc1 CTCF peak 4 1782 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1e3cecc5-3880-402b-8f8e-13c4dfaf44d6/ENCFF056JQX.bigBed\ color 0,176,240\ labelFields none\ longLabel Panc1 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR203QEB Peak\ track wgEncodeReg4Epigenetics_ENCFF056JQX\ type bigBed 5\ visibility squish\ GlioblastomaCellLineT98G_CNhs11272_ctss_fwd Cl:T98G+ bigWig glioblastoma cell line:T98G_CNhs11272_10485-107A8_forward 0 1783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aT98G.CNhs11272.10485-107A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:T98G_CNhs11272_10485-107A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10485-107A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:T98G+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineT98G_CNhs11272_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineT98G_CNhs11272_tpm_fwd Cl:T98G+ bigWig glioblastoma cell line:T98G_CNhs11272_10485-107A8_forward 1 1783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aT98G.CNhs11272.10485-107A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel glioblastoma cell line:T98G_CNhs11272_10485-107A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10485-107A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:T98G+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GlioblastomaCellLineT98G_CNhs11272_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF701TVD ENCSR109YGM Peak bigBed 5 K562 CREB3L1 peaks 4 1783 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/0104a1fb-9001-4ed0-ae89-f6f07f1518b1/ENCFF701TVD.bigBed\ labelFields none\ longLabel K562 CREB3L1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR109YGM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF701TVD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF004ITE ENCSR203QEB Signal bigWig Panc1 CTCF signal 2 1783 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f34b7675-ebd9-47b1-83de-98bfd1913cf7/ENCFF004ITE.bigWig\ color 0,176,240\ longLabel Panc1 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR203QEB Signal\ track wgEncodeReg4Epigenetics_ENCFF004ITE\ type bigWig\ visibility full\ GlioblastomaCellLineT98G_CNhs11272_ctss_rev Cl:T98G- bigWig glioblastoma cell line:T98G_CNhs11272_10485-107A8_reverse 0 1784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aT98G.CNhs11272.10485-107A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:T98G_CNhs11272_10485-107A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10485-107A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:T98G-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineT98G_CNhs11272_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8\ urlLabel FANTOM5 Details:\ GlioblastomaCellLineT98G_CNhs11272_tpm_rev Cl:T98G- bigWig glioblastoma cell line:T98G_CNhs11272_10485-107A8_reverse 1 1784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/glioblastoma%20cell%20line%3aT98G.CNhs11272.10485-107A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel glioblastoma cell line:T98G_CNhs11272_10485-107A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10485-107A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:T98G-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GlioblastomaCellLineT98G_CNhs11272_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10485-107A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF116CGU ENCSR109YGM Signal bigWig K562 CREB3L1 ENCSR109YGM signal 2 1784 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/a11f5796-4e47-48fb-a652-654bdea7bccb/ENCFF116CGU.bigWig\ color 254,75,173\ longLabel K562 CREB3L1 ENCSR109YGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR109YGM Signal\ track wgEncodeReg4TfChip_ENCFF116CGU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF977LBD ENCSR204OJS Peak bigBed 5 Stomach tissue male adult 54 years H3K27ac peak 4 1784 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/ccedd6a3-f35d-4bdc-b1b6-bc22b11d67d7/ENCFF977LBD.bigBed\ color 181,145,0\ longLabel Stomach tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR204OJS Peak\ track wgEncodeReg4Epigenetics_ENCFF977LBD\ type bigBed 5\ visibility squish\ NeuroectodermalTumorCellLineTASK1_CNhs11866_ctss_fwd Cl:TASK1+ bigWig neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_forward 0 1785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aTASK1.CNhs11866.10774-110F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10774-110F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TASK1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroectodermalTumorCellLineTASK1_CNhs11866_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9\ urlLabel FANTOM5 Details:\ NeuroectodermalTumorCellLineTASK1_CNhs11866_tpm_fwd Cl:TASK1+ bigWig neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_forward 1 1785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aTASK1.CNhs11866.10774-110F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10774-110F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TASK1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track NeuroectodermalTumorCellLineTASK1_CNhs11866_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF825TSJ ENCSR110BYN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33A ZNF33A peaks 4 1785 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/87aaef0c-6241-4d50-8fbc-c73711a7bc1c/ENCFF825TSJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33A ZNF33A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR110BYN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF825TSJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF493RLF ENCSR204OJS Signal bigWig Stomach tissue male adult 54 years H3K27ac signal 2 1785 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/6b6a5cdc-8800-4177-8972-60d2ad944130/ENCFF493RLF.bigWig\ color 181,145,0\ longLabel Stomach tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR204OJS Signal\ track wgEncodeReg4Epigenetics_ENCFF493RLF\ type bigWig\ visibility full\ NeuroectodermalTumorCellLineTASK1_CNhs11866_ctss_rev Cl:TASK1- bigWig neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_reverse 0 1786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aTASK1.CNhs11866.10774-110F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10774-110F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TASK1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineTASK1_CNhs11866_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9\ urlLabel FANTOM5 Details:\ NeuroectodermalTumorCellLineTASK1_CNhs11866_tpm_rev Cl:TASK1- bigWig neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_reverse 1 1786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neuroectodermal%20tumor%20cell%20line%3aTASK1.CNhs11866.10774-110F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neuroectodermal tumor cell line:TASK1_CNhs11866_10774-110F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10774-110F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TASK1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track NeuroectodermalTumorCellLineTASK1_CNhs11866_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10774-110F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF698JAG ENCSR110BYN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33A ZNF33A ENCSR110BYN signal 2 1786 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/5eee37a6-bd5e-4e9f-8929-2d79bc8341e8/ENCFF698JAG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF33A ZNF33A ENCSR110BYN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR110BYN Signal\ track wgEncodeReg4TfChip_ENCFF698JAG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF472QAR ENCSR204SMO Peak bigBed 5 Heart right ventricle tissue male adult 46 years ATAC peak 4 1786 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/3295fbd1-30f3-41e6-94a6-2924dfe449c9/ENCFF472QAR.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 46 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR204SMO Peak\ track wgEncodeReg4Epigenetics_ENCFF472QAR\ type bigBed 5\ visibility squish\ ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_ctss_fwd Cl:TC-YIK+ bigWig argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_forward 0 1787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/argyrophil%20small%20cell%20carcinoma%20cell%20line%3aTC-YIK.CNhs11725.10589-108D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10589-108D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TC-YIK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4\ urlLabel FANTOM5 Details:\ ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_tpm_fwd Cl:TC-YIK+ bigWig argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_forward 1 1787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/argyrophil%20small%20cell%20carcinoma%20cell%20line%3aTC-YIK.CNhs11725.10589-108D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10589-108D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TC-YIK+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF792THT ENCSR112ALD Peak bigBed 5 HepG2 CREB1 peaks 4 1787 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/d5fa1719-20ff-4d01-9fcb-47af1cfa755c/ENCFF792THT.bigBed\ labelFields none\ longLabel HepG2 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR112ALD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF792THT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF573VRY ENCSR204SMO Signal bigWig Heart right ventricle tissue male adult 46 years ATAC signal 2 1787 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/2b180be0-7303-4961-b4b8-6af2d54ffdbe/ENCFF573VRY.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 46 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR204SMO Signal\ track wgEncodeReg4Epigenetics_ENCFF573VRY\ type bigWig\ visibility full\ ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_ctss_rev Cl:TC-YIK- bigWig argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_reverse 0 1788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/argyrophil%20small%20cell%20carcinoma%20cell%20line%3aTC-YIK.CNhs11725.10589-108D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10589-108D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TC-YIK-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4\ urlLabel FANTOM5 Details:\ ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_tpm_rev Cl:TC-YIK- bigWig argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_reverse 1 1788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/argyrophil%20small%20cell%20carcinoma%20cell%20line%3aTC-YIK.CNhs11725.10589-108D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel argyrophil small cell carcinoma cell line:TC-YIK_CNhs11725_10589-108D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10589-108D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TC-YIK-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ArgyrophilSmallCellCarcinomaCellLineTCYIK_CNhs11725_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10589-108D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF736SVK ENCSR112ALD Signal bigWig HepG2 CREB1 ENCSR112ALD signal 2 1788 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/02af451e-d0f7-4859-9adf-81fc41a5562f/ENCFF736SVK.bigWig\ color 137,152,82\ longLabel HepG2 CREB1 ENCSR112ALD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR112ALD Signal\ track wgEncodeReg4TfChip_ENCFF736SVK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF329HJH ENCSR204TAU Peak bigBed 5 Esophagus squamous epithelium tissue female adult 51 years H3K27ac peak 4 1788 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9f1201a1-eb79-4a30-a668-49d445871810/ENCFF329HJH.bigBed\ color 181,145,0\ longLabel Esophagus squamous epithelium tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR204TAU Peak\ track wgEncodeReg4Epigenetics_ENCFF329HJH\ type bigBed 5\ visibility squish\ ThyroidCarcinomaCellLineTCO1_CNhs11872_ctss_fwd Cl:TCO-1+ bigWig thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_forward 0 1789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aTCO-1.CNhs11872.10783-110G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10783-110G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TCO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThyroidCarcinomaCellLineTCO1_CNhs11872_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9\ urlLabel FANTOM5 Details:\ ThyroidCarcinomaCellLineTCO1_CNhs11872_tpm_fwd Cl:TCO-1+ bigWig thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_forward 1 1789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aTCO-1.CNhs11872.10783-110G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10783-110G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TCO-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThyroidCarcinomaCellLineTCO1_CNhs11872_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF598PWW ENCSR112RNT Peak bigBed 5 K562 HNRNPLL peaks 4 1789 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/b729a6b6-0218-4c6b-8e03-302748e16511/ENCFF598PWW.bigBed\ labelFields none\ longLabel K562 HNRNPLL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR112RNT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF598PWW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF261VFS ENCSR204TAU Signal bigWig Esophagus squamous epithelium tissue female adult 51 years H3K27ac signal 2 1789 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/8f2df3f4-8cd1-4ab6-a35f-d2830c2cf8a6/ENCFF261VFS.bigWig\ color 181,145,0\ longLabel Esophagus squamous epithelium tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR204TAU Signal\ track wgEncodeReg4Epigenetics_ENCFF261VFS\ type bigWig\ visibility full\ ThyroidCarcinomaCellLineTCO1_CNhs11872_ctss_rev Cl:TCO-1- bigWig thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_reverse 0 1790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aTCO-1.CNhs11872.10783-110G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10783-110G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TCO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ThyroidCarcinomaCellLineTCO1_CNhs11872_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9\ urlLabel FANTOM5 Details:\ ThyroidCarcinomaCellLineTCO1_CNhs11872_tpm_rev Cl:TCO-1- bigWig thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_reverse 1 1790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%20carcinoma%20cell%20line%3aTCO-1.CNhs11872.10783-110G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thyroid carcinoma cell line:TCO-1_CNhs11872_10783-110G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10783-110G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TCO-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ThyroidCarcinomaCellLineTCO1_CNhs11872_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10783-110G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF209WQK ENCSR112RNT Signal bigWig K562 HNRNPLL ENCSR112RNT signal 2 1790 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/bcf7204e-8dfc-47a5-af7e-9abcbd2b0e2b/ENCFF209WQK.bigWig\ color 254,75,173\ longLabel K562 HNRNPLL ENCSR112RNT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR112RNT Signal\ track wgEncodeReg4TfChip_ENCFF209WQK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF075IFM ENCSR205ECC Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase peak 4 1790 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/d3a8c5eb-1ce0-4c06-9a23-4ca5818071d1/ENCFF075IFM.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR205ECC Peak\ track wgEncodeReg4Epigenetics_ENCFF075IFM\ type bigBed 5\ visibility squish\ BasalCellCarcinomaCellLineTE354_T_CNhs11932_ctss_fwd Cl:TE354_T+ bigWig basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_forward 0 1791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/basal%20cell%20carcinoma%20cell%20line%3aTE%20354%2eT.CNhs11932.10702-109G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10702-109G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TE354_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BasalCellCarcinomaCellLineTE354_T_CNhs11932_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9\ urlLabel FANTOM5 Details:\ BasalCellCarcinomaCellLineTE354_T_CNhs11932_tpm_fwd Cl:TE354_T+ bigWig basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_forward 1 1791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/basal%20cell%20carcinoma%20cell%20line%3aTE%20354%2eT.CNhs11932.10702-109G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10702-109G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TE354_T+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BasalCellCarcinomaCellLineTE354_T_CNhs11932_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF229ULU ENCSR112XUO Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP53 TP53 peaks 4 1791 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/409d6329-8817-4cd2-9d19-f2c4e6c38063/ENCFF229ULU.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP53 TP53 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR112XUO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF229ULU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF117UBS ENCSR205ECC Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase signal 2 1791 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/e9d06261-48b1-4c1e-b78e-cf0c46cd9e2d/ENCFF117UBS.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR205ECC Signal\ track wgEncodeReg4Epigenetics_ENCFF117UBS\ type bigWig\ visibility full\ BasalCellCarcinomaCellLineTE354_T_CNhs11932_ctss_rev Cl:TE354_T- bigWig basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_reverse 0 1792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/basal%20cell%20carcinoma%20cell%20line%3aTE%20354%2eT.CNhs11932.10702-109G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10702-109G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TE354_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BasalCellCarcinomaCellLineTE354_T_CNhs11932_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9\ urlLabel FANTOM5 Details:\ BasalCellCarcinomaCellLineTE354_T_CNhs11932_tpm_rev Cl:TE354_T- bigWig basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_reverse 1 1792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/basal%20cell%20carcinoma%20cell%20line%3aTE%20354%2eT.CNhs11932.10702-109G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel basal cell carcinoma cell line:TE 354_T_CNhs11932_10702-109G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10702-109G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TE354_T-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BasalCellCarcinomaCellLineTE354_T_CNhs11932_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10702-109G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF918SIK ENCSR112XUO Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP53 TP53 ENCSR112XUO signal 2 1792 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/7ffa3807-8ffa-4f8f-8c12-91ba70321df2/ENCFF918SIK.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP53 TP53 ENCSR112XUO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR112XUO Signal\ track wgEncodeReg4TfChip_ENCFF918SIK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF546QIK ENCSR206ETG Peak bigBed 5 Gastroesophageal sphincter tissue female adult 53 years CTCF peak 4 1792 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/71e1bde0-99f8-4c8b-87f2-c566da507f28/ENCFF546QIK.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastroesophageal sphincter tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206ETG Peak\ track wgEncodeReg4Epigenetics_ENCFF546QIK\ type bigBed 5\ visibility squish\ ClearCellCarcinomaCellLineTEN_CNhs11930_ctss_fwd Cl:TEN+ bigWig clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_forward 0 1793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aTEN.CNhs11930.10636-108I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10636-108I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TEN+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ClearCellCarcinomaCellLineTEN_CNhs11930_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6\ urlLabel FANTOM5 Details:\ ClearCellCarcinomaCellLineTEN_CNhs11930_tpm_fwd Cl:TEN+ bigWig clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_forward 1 1793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aTEN.CNhs11930.10636-108I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10636-108I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TEN+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ClearCellCarcinomaCellLineTEN_CNhs11930_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF245KEE ENCSR113COJ Peak bigBed 5 Pancreas tissue female adult (59 years) CTCF peaks 4 1793 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/9f30d166-a3ae-4b0d-b23a-077ef7676f75/ENCFF245KEE.bigBed\ labelFields none\ longLabel Pancreas tissue female adult (59 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR113COJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF245KEE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF733RSG ENCSR206ETG Signal bigWig Gastroesophageal sphincter tissue female adult 53 years CTCF signal 2 1793 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7541064e-c1a8-42b5-b153-24e2c3a91e08/ENCFF733RSG.bigWig\ color 0,176,240\ longLabel Gastroesophageal sphincter tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206ETG Signal\ track wgEncodeReg4Epigenetics_ENCFF733RSG\ type bigWig\ visibility full\ ClearCellCarcinomaCellLineTEN_CNhs11930_ctss_rev Cl:TEN- bigWig clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_reverse 0 1794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aTEN.CNhs11930.10636-108I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10636-108I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TEN-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ClearCellCarcinomaCellLineTEN_CNhs11930_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6\ urlLabel FANTOM5 Details:\ ClearCellCarcinomaCellLineTEN_CNhs11930_tpm_rev Cl:TEN- bigWig clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_reverse 1 1794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/clear%20cell%20carcinoma%20cell%20line%3aTEN.CNhs11930.10636-108I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel clear cell carcinoma cell line:TEN_CNhs11930_10636-108I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10636-108I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TEN-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ClearCellCarcinomaCellLineTEN_CNhs11930_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10636-108I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF297EQI ENCSR113COJ Signal bigWig Pancreas tissue female adult (59 years) CTCF ENCSR113COJ signal 2 1794 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2598c609-8925-4cb2-ba14-51b678d68b88/ENCFF297EQI.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (59 years) CTCF ENCSR113COJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR113COJ Signal\ track wgEncodeReg4TfChip_ENCFF297EQI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF593GTW ENCSR206JRX Peak bigBed 5 Peripheral blood mononuclear cell female adult 28 years H3K4me3 peak 4 1794 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/57d974b5-ae66-43cd-9841-4187765b7c25/ENCFF593GTW.bigBed\ color 255,0,0\ longLabel Peripheral blood mononuclear cell female adult 28 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206JRX Peak\ track wgEncodeReg4Epigenetics_ENCFF593GTW\ type bigBed 5\ visibility squish\ BileDuctCarcinomaCellLineTFK1_CNhs11265_ctss_fwd Cl:TFK-1+ bigWig bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_forward 0 1795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aTFK-1.CNhs11265.10496-107C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10496-107C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TFK-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BileDuctCarcinomaCellLineTFK1_CNhs11265_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1\ urlLabel FANTOM5 Details:\ BileDuctCarcinomaCellLineTFK1_CNhs11265_tpm_fwd Cl:TFK-1+ bigWig bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_forward 1 1795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aTFK-1.CNhs11265.10496-107C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10496-107C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TFK-1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track BileDuctCarcinomaCellLineTFK1_CNhs11265_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF434OHW ENCSR113GDB Peak bigBed 5 SK-N-MC EZH2 peaks 4 1795 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/02bdc412-0930-4765-8205-fff72a5152eb/ENCFF434OHW.bigBed\ labelFields none\ longLabel SK-N-MC EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR113GDB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF434OHW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF588KRS ENCSR206JRX Signal bigWig Peripheral blood mononuclear cell female adult 28 years H3K4me3 signal 2 1795 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/d26e3ed4-7cbb-4ab7-96b6-6777c734e859/ENCFF588KRS.bigWig\ color 255,0,0\ longLabel Peripheral blood mononuclear cell female adult 28 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206JRX Signal\ track wgEncodeReg4Epigenetics_ENCFF588KRS\ type bigWig\ visibility full\ BileDuctCarcinomaCellLineTFK1_CNhs11265_ctss_rev Cl:TFK-1- bigWig bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_reverse 0 1796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aTFK-1.CNhs11265.10496-107C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10496-107C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TFK-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BileDuctCarcinomaCellLineTFK1_CNhs11265_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1\ urlLabel FANTOM5 Details:\ BileDuctCarcinomaCellLineTFK1_CNhs11265_tpm_rev Cl:TFK-1- bigWig bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_reverse 1 1796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bile%20duct%20carcinoma%20cell%20line%3aTFK-1.CNhs11265.10496-107C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bile duct carcinoma cell line:TFK-1_CNhs11265_10496-107C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10496-107C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TFK-1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track BileDuctCarcinomaCellLineTFK1_CNhs11265_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10496-107C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF084CLI ENCSR113GDB Signal bigWig SK-N-MC EZH2 ENCSR113GDB signal 2 1796 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/bb031b24-67d4-4be2-b868-c381fd7690ea/ENCFF084CLI.bigWig\ color 155,155,18\ longLabel SK-N-MC EZH2 ENCSR113GDB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR113GDB Signal\ track wgEncodeReg4TfChip_ENCFF084CLI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF763YHH ENCSR206OJJ Peak bigBed 5 Kidney tissue female adult 47 years DNase peak 4 1796 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/97db69b7-6dcb-4837-bc3c-b044a06e71f8/ENCFF763YHH.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue female adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206OJJ Peak\ track wgEncodeReg4Epigenetics_ENCFF763YHH\ type bigBed 5\ visibility squish\ GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_ctss_fwd Cl:TGBC14TKB+ bigWig gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_forward 0 1797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC14TKB.CNhs11256.10470-106I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10470-106I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TGBC14TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2\ urlLabel FANTOM5 Details:\ GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_tpm_fwd Cl:TGBC14TKB+ bigWig gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_forward 1 1797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC14TKB.CNhs11256.10470-106I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10470-106I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TGBC14TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF880VZB ENCSR113LAS Peak bigBed 5 K562 MTA2 peaks 4 1797 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/7786c70e-f039-47fd-81df-aa09bfd31139/ENCFF880VZB.bigBed\ labelFields none\ longLabel K562 MTA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR113LAS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF880VZB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF485CJZ ENCSR206OJJ Signal bigWig Kidney tissue female adult 47 years DNase signal 2 1797 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/3083d2fb-7a65-4110-9093-d6c4980f6bbc/ENCFF485CJZ.bigWig\ color 6,218,147\ longLabel Kidney tissue female adult 47 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206OJJ Signal\ track wgEncodeReg4Epigenetics_ENCFF485CJZ\ type bigWig\ visibility full\ GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_ctss_rev Cl:TGBC14TKB- bigWig gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_reverse 0 1798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC14TKB.CNhs11256.10470-106I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10470-106I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TGBC14TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2\ urlLabel FANTOM5 Details:\ GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_tpm_rev Cl:TGBC14TKB- bigWig gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_reverse 1 1798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC14TKB.CNhs11256.10470-106I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gall bladder carcinoma cell line:TGBC14TKB_CNhs11256_10470-106I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10470-106I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TGBC14TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GallBladderCarcinomaCellLineTGBC14TKB_CNhs11256_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10470-106I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF726LEK ENCSR113LAS Signal bigWig K562 MTA2 ENCSR113LAS signal 2 1798 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/91d4edc6-3005-4b69-ba5a-f7d9fb34ca07/ENCFF726LEK.bigWig\ color 254,75,173\ longLabel K562 MTA2 ENCSR113LAS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR113LAS Signal\ track wgEncodeReg4TfChip_ENCFF726LEK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF546HJP ENCSR206STN Peak bigBed 5 Gastrocnemius medialis tissue male adult 37 years H3K4me3 peak 4 1798 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/99fb1c08-8f2b-4838-81b6-6bdf05329b62/ENCFF546HJP.bigBed\ color 255,0,0\ longLabel Gastrocnemius medialis tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206STN Peak\ track wgEncodeReg4Epigenetics_ENCFF546HJP\ type bigBed 5\ visibility squish\ PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_ctss_fwd Cl:TGBC18TKB+ bigWig papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_forward 0 1799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillotubular%20adenocarcinoma%20cell%20line%3aTGBC18TKB.CNhs10734.10417-106C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10417-106C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TGBC18TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3\ urlLabel FANTOM5 Details:\ PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_tpm_fwd Cl:TGBC18TKB+ bigWig papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_forward 1 1799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillotubular%20adenocarcinoma%20cell%20line%3aTGBC18TKB.CNhs10734.10417-106C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10417-106C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TGBC18TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF808EMX ENCSR115BBC Peak bigBed 5 K562 ASH1L peaks 4 1799 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/132fef6a-73ef-47ab-9ebf-97d43f3f7587/ENCFF808EMX.bigBed\ labelFields none\ longLabel K562 ASH1L peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115BBC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF808EMX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF431FFY ENCSR206STN Signal bigWig Gastrocnemius medialis tissue male adult 37 years H3K4me3 signal 2 1799 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/cd6ae548-7277-480f-a7ec-9bba319a14fa/ENCFF431FFY.bigWig\ color 255,0,0\ longLabel Gastrocnemius medialis tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR206STN Signal\ track wgEncodeReg4Epigenetics_ENCFF431FFY\ type bigWig\ visibility full\ PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_ctss_rev Cl:TGBC18TKB- bigWig papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_reverse 0 1800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillotubular%20adenocarcinoma%20cell%20line%3aTGBC18TKB.CNhs10734.10417-106C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10417-106C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TGBC18TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3\ urlLabel FANTOM5 Details:\ PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_tpm_rev Cl:TGBC18TKB- bigWig papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_reverse 1 1800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/papillotubular%20adenocarcinoma%20cell%20line%3aTGBC18TKB.CNhs10734.10417-106C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel papillotubular adenocarcinoma cell line:TGBC18TKB_CNhs10734_10417-106C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10417-106C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TGBC18TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track PapillotubularAdenocarcinomaCellLineTGBC18TKB_CNhs10734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10417-106C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF838IQI ENCSR115BBC Signal bigWig K562 ASH1L ENCSR115BBC signal 2 1800 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/fd338608-ed74-48df-8a31-20d8e6c138eb/ENCFF838IQI.bigWig\ color 254,75,173\ longLabel K562 ASH1L ENCSR115BBC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115BBC Signal\ track wgEncodeReg4TfChip_ENCFF838IQI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF314OVQ ENCSR207ABA Peak bigBed 5 Basal cell carcinoma skin epidermis tissue male adult 67 years H3K27ac peak 4 1800 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/0f7feeb4-5777-4d6b-a3e8-9d252aa0a053/ENCFF314OVQ.bigBed\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 67 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR207ABA Peak\ track wgEncodeReg4Epigenetics_ENCFF314OVQ\ type bigBed 5\ visibility squish\ GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_ctss_fwd Cl:TGBC2TKB+ bigWig gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_forward 0 1801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC2TKB.CNhs10733.10415-106C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10415-106C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TGBC2TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1\ urlLabel FANTOM5 Details:\ GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_tpm_fwd Cl:TGBC2TKB+ bigWig gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_forward 1 1801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC2TKB.CNhs10733.10415-106C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10415-106C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TGBC2TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF240UWG ENCSR115BLD Peak bigBed 5 HepG2 KDM1A peaks 4 1801 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/545b371d-fcac-44c4-87bc-5ff8c266ed98/ENCFF240UWG.bigBed\ labelFields none\ longLabel HepG2 KDM1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115BLD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF240UWG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF032EHZ ENCSR207ABA Signal bigWig Basal cell carcinoma skin epidermis tissue male adult 67 years H3K27ac signal 2 1801 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/0c40daa8-266a-41f6-9309-9eb65606714b/ENCFF032EHZ.bigWig\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 67 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR207ABA Signal\ track wgEncodeReg4Epigenetics_ENCFF032EHZ\ type bigWig\ visibility full\ GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_ctss_rev Cl:TGBC2TKB- bigWig gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_reverse 0 1802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC2TKB.CNhs10733.10415-106C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10415-106C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TGBC2TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1\ urlLabel FANTOM5 Details:\ GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_tpm_rev Cl:TGBC2TKB- bigWig gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_reverse 1 1802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%20carcinoma%20cell%20line%3aTGBC2TKB.CNhs10733.10415-106C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gall bladder carcinoma cell line:TGBC2TKB_CNhs10733_10415-106C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10415-106C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TGBC2TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track GallBladderCarcinomaCellLineTGBC2TKB_CNhs10733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10415-106C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF227BAG ENCSR115BLD Signal bigWig HepG2 KDM1A ENCSR115BLD signal 2 1802 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/201c61c9-2473-4223-a014-436b49f38915/ENCFF227BAG.bigWig\ color 137,152,82\ longLabel HepG2 KDM1A ENCSR115BLD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115BLD Signal\ track wgEncodeReg4TfChip_ENCFF227BAG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF168JOU ENCSR207CQH Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours DNase peak 4 1802 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/23316f84-6548-4272-8b04-6e0dbee09167/ENCFF168JOU.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR207CQH Peak\ track wgEncodeReg4Epigenetics_ENCFF168JOU\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_ctss_fwd Cl:THP-1fresh+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_forward 0 1803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28fresh%29.CNhs10722.10399-106A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10399-106A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:THP-1fresh+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_tpm_fwd Cl:THP-1fresh+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_forward 1 1803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28fresh%29.CNhs10722.10399-106A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10399-106A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:THP-1fresh+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF997QIX ENCSR115PIK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER2 MIER2 peaks 4 1803 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/de940415-f335-41e2-9989-063292fee2e2/ENCFF997QIX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER2 MIER2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115PIK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF997QIX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF176HTM ENCSR207CQH Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours DNase signal 2 1803 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/967543e4-dd36-4440-b8eb-b4def828cb5c/ENCFF176HTM.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-12 subunit alpha for 48 hours, 100 ng/mL Interleukin-12 subunit beta for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR207CQH Signal\ track wgEncodeReg4Epigenetics_ENCFF176HTM\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_ctss_rev Cl:THP-1fresh- bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_reverse 0 1804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28fresh%29.CNhs10722.10399-106A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10399-106A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:THP-1fresh-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_tpm_rev Cl:THP-1fresh- bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_reverse 1 1804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28fresh%29.CNhs10722.10399-106A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)_CNhs10722_10399-106A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10399-106A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:THP-1fresh-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Fresh_CNhs10722_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10399-106A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF063VAP ENCSR115PIK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER2 MIER2 ENCSR115PIK signal 2 1804 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4da2dacf-d51b-4e87-9718-0841d5d91db3/ENCFF063VAP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER2 MIER2 ENCSR115PIK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115PIK Signal\ track wgEncodeReg4TfChip_ENCFF063VAP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF975EBU ENCSR207FYD Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 1804 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ed39495d-dd35-4211-93bc-15776395aa75/ENCFF975EBU.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR207FYD Peak\ track wgEncodeReg4Epigenetics_ENCFF975EBU\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_ctss_fwd Cl:THP-1revived+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_forward 0 1805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28revived%29.CNhs10723.10400-106A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10400-106A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:THP-1revived+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_tpm_fwd Cl:THP-1revived+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_forward 1 1805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28revived%29.CNhs10723.10400-106A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10400-106A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:THP-1revived+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF236IUS ENCSR115SMW Peak bigBed 5 K562 PKNOX1 peaks 4 1805 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/72debad2-841f-4aa3-8cc9-a6d542764d3c/ENCFF236IUS.bigBed\ labelFields none\ longLabel K562 PKNOX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115SMW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF236IUS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF484YUA ENCSR207FYD Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 1805 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/cef037b9-645b-4a62-9e14-ae6c730fbf4d/ENCFF484YUA.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR207FYD Signal\ track wgEncodeReg4Epigenetics_ENCFF484YUA\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_ctss_rev Cl:THP-1revived- bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_reverse 0 1806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28revived%29.CNhs10723.10400-106A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10400-106A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:THP-1revived-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_tpm_rev Cl:THP-1revived- bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_reverse 1 1806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28revived%29.CNhs10723.10400-106A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)_CNhs10723_10400-106A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10400-106A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:THP-1revived-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Revived_CNhs10723_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10400-106A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF695DLR ENCSR115SMW Signal bigWig K562 PKNOX1 ENCSR115SMW signal 2 1806 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/219ce8da-703f-44a1-a597-05fbd19ad32a/ENCFF695DLR.bigWig\ color 254,75,173\ longLabel K562 PKNOX1 ENCSR115SMW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR115SMW Signal\ track wgEncodeReg4TfChip_ENCFF695DLR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF708OGX ENCSR207TUX Peak bigBed 5 Amniotic stem cell male embryo 15 weeks DNase peak 4 1806 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/1dbc81e1-0f6a-4a25-886a-79afbd1c2246/ENCFF708OGX.bigBed\ color 6,218,147\ labelFields none\ longLabel Amniotic stem cell male embryo 15 weeks DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR207TUX Peak\ track wgEncodeReg4Epigenetics_ENCFF708OGX\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Thawed_CNhs10724_ctss_fwd Cl:THP-1thawed+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)_CNhs10724_10405-106A9_forward 0 1807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10405-106A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28thawed%29.CNhs10724.10405-106A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)_CNhs10724_10405-106A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10405-106A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:THP-1thawed+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Thawed_CNhs10724_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10405-106A9\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1Thawed_CNhs10724_tpm_fwd Cl:THP-1thawed+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)_CNhs10724_10405-106A9_forward 1 1807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10405-106A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28thawed%29.CNhs10724.10405-106A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed)_CNhs10724_10405-106A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10405-106A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:THP-1thawed+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1Thawed_CNhs10724_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10405-106A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF145YWG ENCSR116NDV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB CBFB peaks 4 1807 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/b77efa59-594f-4791-b63f-86edc794395e/ENCFF145YWG.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB CBFB peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208DMX Peak\ track wgEncodeReg4Epigenetics_ENCFF588WYP\ type bigBed 5\ visibility squish\ AstrocytomaCellLineTM31_CNhs10742_ctss_fwd Cl:TM-31+ bigWig astrocytoma cell line:TM-31_CNhs10742_10425-106D2_forward 0 1809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10425-106D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/astrocytoma%20cell%20line%3aTM-31.CNhs10742.10425-106D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel astrocytoma cell line:TM-31_CNhs10742_10425-106D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10425-106D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TM-31+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AstrocytomaCellLineTM31_CNhs10742_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10425-106D2\ urlLabel FANTOM5 Details:\ AstrocytomaCellLineTM31_CNhs10742_tpm_fwd Cl:TM-31+ bigWig astrocytoma cell line:TM-31_CNhs10742_10425-106D2_forward 1 1809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10425-106D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/astrocytoma%20cell%20line%3aTM-31.CNhs10742.10425-106D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel astrocytoma cell line:TM-31_CNhs10742_10425-106D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10425-106D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TM-31+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AstrocytomaCellLineTM31_CNhs10742_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10425-106D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF800ZQH ENCSR117CHD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOMEZ HOMEZ peaks 4 1809 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/8c3b9851-15bd-4655-aaab-f66ca2a44f65/ENCFF800ZQH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOMEZ HOMEZ peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208HAP Peak\ track wgEncodeReg4Epigenetics_ENCFF851MGE\ type bigBed 5\ visibility squish\ RectalCancerCellLineTT1TKB_CNhs11255_ctss_fwd Cl:TT1TKB+ bigWig rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_forward 0 1811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectal%20cancer%20cell%20line%3aTT1TKB.CNhs11255.10469-106I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10469-106I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TT1TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RectalCancerCellLineTT1TKB_CNhs11255_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1\ urlLabel FANTOM5 Details:\ RectalCancerCellLineTT1TKB_CNhs11255_tpm_fwd Cl:TT1TKB+ bigWig rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_forward 1 1811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectal%20cancer%20cell%20line%3aTT1TKB.CNhs11255.10469-106I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10469-106I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TT1TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RectalCancerCellLineTT1TKB_CNhs11255_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF153KBD ENCSR117KWH Peak bigBed 5 GM12878 ZNF207 peaks 4 1811 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/798ed680-2524-4023-9af9-82b44034c6c8/ENCFF153KBD.bigBed\ labelFields none\ longLabel GM12878 ZNF207 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR117KWH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF153KBD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF401VCL ENCSR208HAP Signal bigWig HG02981 ATAC signal 2 1811 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/7a622e71-fb46-40cb-8277-daa1559f0b84/ENCFF401VCL.bigWig\ color 2,199,185\ longLabel HG02981 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208HAP Signal\ track wgEncodeReg4Epigenetics_ENCFF401VCL\ type bigWig\ visibility full\ RectalCancerCellLineTT1TKB_CNhs11255_ctss_rev Cl:TT1TKB- bigWig rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_reverse 0 1812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectal%20cancer%20cell%20line%3aTT1TKB.CNhs11255.10469-106I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10469-106I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TT1TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RectalCancerCellLineTT1TKB_CNhs11255_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1\ urlLabel FANTOM5 Details:\ RectalCancerCellLineTT1TKB_CNhs11255_tpm_rev Cl:TT1TKB- bigWig rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_reverse 1 1812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectal%20cancer%20cell%20line%3aTT1TKB.CNhs11255.10469-106I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel rectal cancer cell line:TT1TKB_CNhs11255_10469-106I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10469-106I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TT1TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RectalCancerCellLineTT1TKB_CNhs11255_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10469-106I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF274XTP ENCSR117KWH Signal bigWig GM12878 ZNF207 ENCSR117KWH signal 2 1812 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/b0e507d3-4a89-4b9b-b7f2-d6424b1cbf64/ENCFF274XTP.bigWig\ color 254,75,173\ longLabel GM12878 ZNF207 ENCSR117KWH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR117KWH Signal\ track wgEncodeReg4TfChip_ENCFF274XTP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF808LEY ENCSR208QRN Peak bigBed 5 Transverse colon tissue female adult 53 years H3K27ac peak 4 1812 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/36b3e7e8-4902-4802-b4aa-7e1018e01a8c/ENCFF808LEY.bigBed\ color 181,145,0\ longLabel Transverse colon tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208QRN Peak\ track wgEncodeReg4Epigenetics_ENCFF808LEY\ type bigBed 5\ visibility squish\ RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_ctss_fwd Cl:TUHR10TKB+ bigWig renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_forward 0 1813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aTUHR10TKB.CNhs11257.10471-106I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10471-106I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TUHR10TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3\ urlLabel FANTOM5 Details:\ RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_tpm_fwd Cl:TUHR10TKB+ bigWig renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_forward 1 1813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aTUHR10TKB.CNhs11257.10471-106I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10471-106I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TUHR10TKB+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF497GLV ENCSR117WTM Peak bigBed 5 K562 stably expressing ZNF24 ZNF24 peaks 4 1813 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/c459ff06-f91c-4d05-8d62-89eb44eb024c/ENCFF497GLV.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF24 ZNF24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR117WTM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF497GLV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF318ECM ENCSR208QRN Signal bigWig Transverse colon tissue female adult 53 years H3K27ac signal 2 1813 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/0c5836d9-7fd2-4fe1-aa24-87844148c0d0/ENCFF318ECM.bigWig\ color 181,145,0\ longLabel Transverse colon tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208QRN Signal\ track wgEncodeReg4Epigenetics_ENCFF318ECM\ type bigWig\ visibility full\ RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_ctss_rev Cl:TUHR10TKB- bigWig renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_reverse 0 1814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aTUHR10TKB.CNhs11257.10471-106I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10471-106I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:TUHR10TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3\ urlLabel FANTOM5 Details:\ RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_tpm_rev Cl:TUHR10TKB- bigWig renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_reverse 1 1814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/renal%20cell%20carcinoma%20cell%20line%3aTUHR10TKB.CNhs11257.10471-106I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel renal cell carcinoma cell line:TUHR10TKB_CNhs11257_10471-106I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10471-106I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:TUHR10TKB-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RenalCellCarcinomaCellLineTUHR10TKB_CNhs11257_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10471-106I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF416MDO ENCSR117WTM Signal bigWig K562 stably expressing ZNF24 ZNF24 ENCSR117WTM signal 2 1814 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/15cdab40-fd97-4048-aac0-99135cf489d4/ENCFF416MDO.bigWig\ color 254,75,173\ longLabel K562 stably expressing ZNF24 ZNF24 ENCSR117WTM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR117WTM Signal\ track wgEncodeReg4TfChip_ENCFF416MDO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF387CWY ENCSR208WDY Peak bigBed 5 Upper lobe of left lung tissue female adult 53 years H3K4me3 peak 4 1814 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/f39cc04a-5031-4a2d-a3dd-e326f8128d60/ENCFF387CWY.bigBed\ color 255,0,0\ longLabel Upper lobe of left lung tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208WDY Peak\ track wgEncodeReg4Epigenetics_ENCFF387CWY\ type bigBed 5\ visibility squish\ ThymicCarcinomaCellLineTy82_CNhs14139_ctss_fwd Cl:Ty-82+ bigWig thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_forward 0 1815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymic%20carcinoma%20cell%20line%3aTy-82.CNhs14139.10803-111A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10803-111A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ty-82+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThymicCarcinomaCellLineTy82_CNhs14139_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2\ urlLabel FANTOM5 Details:\ ThymicCarcinomaCellLineTy82_CNhs14139_tpm_fwd Cl:Ty-82+ bigWig thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_forward 1 1815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymic%20carcinoma%20cell%20line%3aTy-82.CNhs14139.10803-111A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10803-111A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ty-82+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track ThymicCarcinomaCellLineTy82_CNhs14139_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF869LPB ENCSR118LGS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2 TSC22D2 peaks 4 1815 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/6883b498-1bbd-43b1-8c56-9d12177d2d4b/ENCFF869LPB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2 TSC22D2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR118LGS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF869LPB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF372LSW ENCSR208WDY Signal bigWig Upper lobe of left lung tissue female adult 53 years H3K4me3 signal 2 1815 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/2a6937b4-c60f-410e-8fc8-48cae92b20cc/ENCFF372LSW.bigWig\ color 255,0,0\ longLabel Upper lobe of left lung tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208WDY Signal\ track wgEncodeReg4Epigenetics_ENCFF372LSW\ type bigWig\ visibility full\ ThymicCarcinomaCellLineTy82_CNhs14139_ctss_rev Cl:Ty-82- bigWig thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_reverse 0 1816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymic%20carcinoma%20cell%20line%3aTy-82.CNhs14139.10803-111A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10803-111A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Ty-82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ThymicCarcinomaCellLineTy82_CNhs14139_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2\ urlLabel FANTOM5 Details:\ ThymicCarcinomaCellLineTy82_CNhs14139_tpm_rev Cl:Ty-82- bigWig thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_reverse 1 1816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymic%20carcinoma%20cell%20line%3aTy-82.CNhs14139.10803-111A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thymic carcinoma cell line:Ty-82_CNhs14139_10803-111A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10803-111A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Ty-82-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track ThymicCarcinomaCellLineTy82_CNhs14139_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10803-111A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF308MWX ENCSR118LGS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2 TSC22D2 ENCSR118LGS signal 2 1816 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/0a404f79-a411-412e-bb06-e59abbbf11a7/ENCFF308MWX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2 TSC22D2 ENCSR118LGS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR118LGS Signal\ track wgEncodeReg4TfChip_ENCFF308MWX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF283ECY ENCSR208YDK Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours DNase peak 4 1816 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/b8906cd6-2a6e-427b-b364-1f5c404bc451/ENCFF283ECY.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR208YDK Peak\ track wgEncodeReg4Epigenetics_ENCFF283ECY\ type bigBed 5\ visibility squish\ AcuteMyeloidLeukemiaFABM5CellLineU937DE4_CNhs13058_ctss_fwd Cl:U-937DE-4+ bigWig acute myeloid leukemia (FAB M5) cell line:U-937 DE-4_CNhs13058_10834-111D6_forward 0 1817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10834-111D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aU-937%20DE-4.CNhs13058.10834-111D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:U-937 DE-4_CNhs13058_10834-111D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10834-111D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:U-937DE-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineU937DE4_CNhs13058_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10834-111D6\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineU937DE4_CNhs13058_tpm_fwd Cl:U-937DE-4+ bigWig acute myeloid leukemia (FAB M5) cell line:U-937 DE-4_CNhs13058_10834-111D6_forward 1 1817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10834-111D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aU-937%20DE-4.CNhs13058.10834-111D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:U-937 DE-4_CNhs13058_10834-111D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10834-111D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:U-937DE-4+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineU937DE4_CNhs13058_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10834-111D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF944USZ ENCSR119FAD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens DEAF1 DEAF1 peaks 4 1817 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/847958bf-37ab-47a0-8f0b-d2a21dc1ee52/ENCFF944USZ.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens DEAF1 DEAF1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR209ECO Peak\ track wgEncodeReg4Epigenetics_ENCFF398RLC\ type bigBed 5\ visibility squish\ SmallCellLungCarcinomaCellLineWAhT_CNhs11812_ctss_fwd Cl:WA-hT+ bigWig small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_forward 0 1819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aWA-hT.CNhs11812.10562-108A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10562-108A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:WA-hT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineWAhT_CNhs11812_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineWAhT_CNhs11812_tpm_fwd Cl:WA-hT+ bigWig small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_forward 1 1819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aWA-hT.CNhs11812.10562-108A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10562-108A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:WA-hT+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track SmallCellLungCarcinomaCellLineWAhT_CNhs11812_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF531NNL ENCSR119OFH Peak bigBed 5 MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA2 BRCA2 peaks 4 1819 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/15/f32954a7-a03e-4338-bef8-24372ffac1cc/ENCFF531NNL.bigBed\ labelFields none\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA2 BRCA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR119OFH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF531NNL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF715WQG ENCSR209ECO Signal bigWig Middle frontal area 46 tissue female adult 90 or above years DNase signal 2 1819 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/fbd2d071-5dfc-4ca8-8bb6-f7a8b2d6ac83/ENCFF715WQG.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR209ECO Signal\ track wgEncodeReg4Epigenetics_ENCFF715WQG\ type bigWig\ visibility full\ SmallCellLungCarcinomaCellLineWAhT_CNhs11812_ctss_rev Cl:WA-hT- bigWig small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_reverse 0 1820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aWA-hT.CNhs11812.10562-108A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10562-108A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:WA-hT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineWAhT_CNhs11812_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4\ urlLabel FANTOM5 Details:\ SmallCellLungCarcinomaCellLineWAhT_CNhs11812_tpm_rev Cl:WA-hT- bigWig small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_reverse 1 1820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20cell%20lung%20carcinoma%20cell%20line%3aWA-hT.CNhs11812.10562-108A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small cell lung carcinoma cell line:WA-hT_CNhs11812_10562-108A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10562-108A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:WA-hT-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track SmallCellLungCarcinomaCellLineWAhT_CNhs11812_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10562-108A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF313JGL ENCSR119OFH Signal bigWig MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA2 BRCA2 ENCSR119OFH signal 2 1820 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/15/eefa9604-84ab-47d1-a028-d4f4708bb3e9/ENCFF313JGL.bigWig\ color 65,171,173\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA2 BRCA2 ENCSR119OFH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR119OFH Signal\ track wgEncodeReg4TfChip_ENCFF313JGL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF809NXV ENCSR209QGZ Peak bigBed 5 Spinal cord tissue female embryo 108 days H3K27ac peak 4 1820 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e0921b2b-2ae1-49b0-b4af-e436d5256dc3/ENCFF809NXV.bigBed\ color 181,145,0\ longLabel Spinal cord tissue female embryo 108 days H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR209QGZ Peak\ track wgEncodeReg4Epigenetics_ENCFF809NXV\ type bigBed 5\ visibility squish\ HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_ctss_fwd Cl:WIL2-NS+ bigWig hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_forward 0 1821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hereditary%20spherocytic%20anemia%20cell%20line%3aWIL2-NS.CNhs11891.10808-111A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10808-111A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:WIL2-NS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7\ urlLabel FANTOM5 Details:\ HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_tpm_fwd Cl:WIL2-NS+ bigWig hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_forward 1 1821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hereditary%20spherocytic%20anemia%20cell%20line%3aWIL2-NS.CNhs11891.10808-111A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10808-111A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:WIL2-NS+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF088QME ENCSR119VCX Peak bigBed 5 K562 PHF21A peaks 4 1821 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/a1852a5d-d52c-4dc3-8b22-50be57fdb78a/ENCFF088QME.bigBed\ labelFields none\ longLabel K562 PHF21A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR119VCX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF088QME\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF116TJK ENCSR209QGZ Signal bigWig Spinal cord tissue female embryo 108 days H3K27ac signal 2 1821 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/40cc3c58-2e62-4755-a618-fa1effac33ad/ENCFF116TJK.bigWig\ color 181,145,0\ longLabel Spinal cord tissue female embryo 108 days H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR209QGZ Signal\ track wgEncodeReg4Epigenetics_ENCFF116TJK\ type bigWig\ visibility full\ HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_ctss_rev Cl:WIL2-NS- bigWig hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_reverse 0 1822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hereditary%20spherocytic%20anemia%20cell%20line%3aWIL2-NS.CNhs11891.10808-111A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10808-111A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:WIL2-NS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7\ urlLabel FANTOM5 Details:\ HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_tpm_rev Cl:WIL2-NS- bigWig hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_reverse 1 1822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hereditary%20spherocytic%20anemia%20cell%20line%3aWIL2-NS.CNhs11891.10808-111A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hereditary spherocytic anemia cell line:WIL2-NS_CNhs11891_10808-111A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10808-111A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:WIL2-NS-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track HereditarySpherocyticAnemiaCellLineWIL2NS_CNhs11891_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10808-111A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF314SJU ENCSR119VCX Signal bigWig K562 PHF21A ENCSR119VCX signal 2 1822 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/1bd80bf3-9e56-46a5-9c34-3c80beedc78e/ENCFF314SJU.bigWig\ color 254,75,173\ longLabel K562 PHF21A ENCSR119VCX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR119VCX Signal\ track wgEncodeReg4TfChip_ENCFF314SJU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF648BWU ENCSR210ESN Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 74 years DNase peak 4 1822 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/428a9dfd-b7cb-4d8a-897f-adc6e7fea128/ENCFF648BWU.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 74 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210ESN Peak\ track wgEncodeReg4Epigenetics_ENCFF648BWU\ type bigBed 5\ visibility squish\ XerodermaPigentosumBCellLineXPL17_CNhs11813_ctss_fwd Cl:XPL17+ bigWig xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_forward 0 1823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/xeroderma%20pigentosum%20b%20cell%20line%3aXPL%2017.CNhs11813.10563-108A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10563-108A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:XPL17+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track XerodermaPigentosumBCellLineXPL17_CNhs11813_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5\ urlLabel FANTOM5 Details:\ XerodermaPigentosumBCellLineXPL17_CNhs11813_tpm_fwd Cl:XPL17+ bigWig xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_forward 1 1823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/xeroderma%20pigentosum%20b%20cell%20line%3aXPL%2017.CNhs11813.10563-108A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10563-108A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:XPL17+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track XerodermaPigentosumBCellLineXPL17_CNhs11813_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF740YLK ENCSR120MPG Peak bigBed 5 K562 PRDM10 peaks 4 1823 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/2aae932c-fd06-4bf9-9d3a-250d2bb2b4b9/ENCFF740YLK.bigBed\ labelFields none\ longLabel K562 PRDM10 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR120MPG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF740YLK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF492WAE ENCSR210ESN Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 74 years DNase signal 2 1823 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/3f8636af-b913-46ff-af2b-d4e5ba11a6d4/ENCFF492WAE.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 74 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210ESN Signal\ track wgEncodeReg4Epigenetics_ENCFF492WAE\ type bigWig\ visibility full\ XerodermaPigentosumBCellLineXPL17_CNhs11813_ctss_rev Cl:XPL17- bigWig xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_reverse 0 1824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/xeroderma%20pigentosum%20b%20cell%20line%3aXPL%2017.CNhs11813.10563-108A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10563-108A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:XPL17-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track XerodermaPigentosumBCellLineXPL17_CNhs11813_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5\ urlLabel FANTOM5 Details:\ XerodermaPigentosumBCellLineXPL17_CNhs11813_tpm_rev Cl:XPL17- bigWig xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_reverse 1 1824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/xeroderma%20pigentosum%20b%20cell%20line%3aXPL%2017.CNhs11813.10563-108A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel xeroderma pigentosum b cell line:XPL 17_CNhs11813_10563-108A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10563-108A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:XPL17-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track XerodermaPigentosumBCellLineXPL17_CNhs11813_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10563-108A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF905BYK ENCSR120MPG Signal bigWig K562 PRDM10 ENCSR120MPG signal 2 1824 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/45c4ae93-0b5a-4fab-985b-5ededc98b285/ENCFF905BYK.bigWig\ color 254,75,173\ longLabel K562 PRDM10 ENCSR120MPG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR120MPG Signal\ track wgEncodeReg4TfChip_ENCFF905BYK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF324HZG ENCSR210JVF Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase peak 4 1824 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/5363805a-2e50-4dff-9aeb-af47680e57af/ENCFF324HZG.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210JVF Peak\ track wgEncodeReg4Epigenetics_ENCFF324HZG\ type bigBed 5\ visibility squish\ RetinoblastomaCellLineY79_CNhs11267_ctss_fwd Cl:Y79+ bigWig retinoblastoma cell line:Y79_CNhs11267_10475-106I7_forward 0 1825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retinoblastoma%20cell%20line%3aY79.CNhs11267.10475-106I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel retinoblastoma cell line:Y79_CNhs11267_10475-106I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10475-106I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Y79+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RetinoblastomaCellLineY79_CNhs11267_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7\ urlLabel FANTOM5 Details:\ RetinoblastomaCellLineY79_CNhs11267_tpm_fwd Cl:Y79+ bigWig retinoblastoma cell line:Y79_CNhs11267_10475-106I7_forward 1 1825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retinoblastoma%20cell%20line%3aY79.CNhs11267.10475-106I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel retinoblastoma cell line:Y79_CNhs11267_10475-106I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10475-106I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Y79+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track RetinoblastomaCellLineY79_CNhs11267_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF644OMA ENCSR121PFY Peak bigBed 5 K562 CDC5L peaks 4 1825 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/ea95fc19-6960-4281-b435-b1050575d9e9/ENCFF644OMA.bigBed\ labelFields none\ longLabel K562 CDC5L peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR121PFY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF644OMA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF413ADP ENCSR210JVF Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase signal 2 1825 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/66105ebf-4410-4062-b82c-0248cd4b49bd/ENCFF413ADP.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210JVF Signal\ track wgEncodeReg4Epigenetics_ENCFF413ADP\ type bigWig\ visibility full\ RetinoblastomaCellLineY79_CNhs11267_ctss_rev Cl:Y79- bigWig retinoblastoma cell line:Y79_CNhs11267_10475-106I7_reverse 0 1826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retinoblastoma%20cell%20line%3aY79.CNhs11267.10475-106I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel retinoblastoma cell line:Y79_CNhs11267_10475-106I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10475-106I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:Y79-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RetinoblastomaCellLineY79_CNhs11267_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7\ urlLabel FANTOM5 Details:\ RetinoblastomaCellLineY79_CNhs11267_tpm_rev Cl:Y79- bigWig retinoblastoma cell line:Y79_CNhs11267_10475-106I7_reverse 1 1826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retinoblastoma%20cell%20line%3aY79.CNhs11267.10475-106I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel retinoblastoma cell line:Y79_CNhs11267_10475-106I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10475-106I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:Y79-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track RetinoblastomaCellLineY79_CNhs11267_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10475-106I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF717QHM ENCSR121PFY Signal bigWig K562 CDC5L ENCSR121PFY signal 2 1826 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/6e6bdc78-ca4a-4d20-bb9c-2bc232faa20f/ENCFF717QHM.bigWig\ color 254,75,173\ longLabel K562 CDC5L ENCSR121PFY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR121PFY Signal\ track wgEncodeReg4TfChip_ENCFF717QHM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF123QEO ENCSR210NKB Peak bigBed 5 Testis tissue male adult 37 years ATAC peak 4 1826 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/a3c0f227-eb9f-4fba-85bd-117f68a87101/ENCFF123QEO.bigBed\ color 2,199,185\ longLabel Testis tissue male adult 37 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210NKB Peak\ track wgEncodeReg4Epigenetics_ENCFF123QEO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF719RDO ENCSR122EYE Peak bigBed 5 Stomach tissue male adult (54 years) POLR2A peaks 4 1827 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/1918d9d1-9b3e-452c-b429-abe2181a90ad/ENCFF719RDO.bigBed\ labelFields none\ longLabel Stomach tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR122EYE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF719RDO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962MQX ENCSR210NKB Signal bigWig Testis tissue male adult 37 years ATAC signal 2 1827 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/d0d0deb3-03c7-4a0e-9d1b-3d077e5010bd/ENCFF962MQX.bigWig\ color 2,199,185\ longLabel Testis tissue male adult 37 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210NKB Signal\ track wgEncodeReg4Epigenetics_ENCFF962MQX\ type bigWig\ visibility full\ Hep2CellsMockTreatedBiolRep1_CNhs13479_ctss_fwd Hep2MockTreatedBr1+ bigWig Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_forward 0 1827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep1.CNhs13479.11898-125E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11898-125E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2MockTreatedBr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsMockTreatedBiolRep1_CNhs13479_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8\ urlLabel FANTOM5 Details:\ Hep2CellsMockTreatedBiolRep1_CNhs13479_tpm_fwd Hep2MockTreatedBr1+ bigWig Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_forward 1 1827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep1.CNhs13479.11898-125E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11898-125E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2MockTreatedBr1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsMockTreatedBiolRep1_CNhs13479_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF355WXU ENCSR122EYE Signal bigWig Stomach tissue male adult (54 years) POLR2A ENCSR122EYE signal 2 1828 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/c6799a67-a930-477a-b766-d36014445b6d/ENCFF355WXU.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (54 years) POLR2A ENCSR122EYE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR122EYE Signal\ track wgEncodeReg4TfChip_ENCFF355WXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF332BRB ENCSR210UDG Peak bigBed 5 Effector memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 peak 4 1828 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/5ae1119d-4c8a-433e-88fd-b7ff2cbbf7e6/ENCFF332BRB.bigBed\ color 255,0,0\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210UDG Peak\ track wgEncodeReg4Epigenetics_ENCFF332BRB\ type bigBed 5\ visibility squish\ Hep2CellsMockTreatedBiolRep1_CNhs13479_ctss_rev Hep2MockTreatedBr1- bigWig Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_reverse 0 1828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep1.CNhs13479.11898-125E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11898-125E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2MockTreatedBr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsMockTreatedBiolRep1_CNhs13479_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8\ urlLabel FANTOM5 Details:\ Hep2CellsMockTreatedBiolRep1_CNhs13479_tpm_rev Hep2MockTreatedBr1- bigWig Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_reverse 1 1828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep1.CNhs13479.11898-125E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells mock treated, biol_rep1_CNhs13479_11898-125E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11898-125E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2MockTreatedBr1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsMockTreatedBiolRep1_CNhs13479_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11898-125E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF882MXU ENCSR122LGV Peak bigBed 5 Prostate gland tissue male adult (54 years) POLR2A peaks 4 1829 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/50c6faf4-61ed-4507-9768-e84b77a54a63/ENCFF882MXU.bigBed\ labelFields none\ longLabel Prostate gland tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR122LGV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF882MXU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF044NRE ENCSR210UDG Signal bigWig Effector memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 signal 2 1829 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e41bed5f-2ed3-465b-8335-ed7f4e54742e/ENCFF044NRE.bigWig\ color 255,0,0\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210UDG Signal\ track wgEncodeReg4Epigenetics_ENCFF044NRE\ type bigWig\ visibility full\ Hep2CellsMockTreatedBiolRep2_CNhs13500_ctss_fwd Hep2MockTreatedBr2+ bigWig Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_forward 0 1829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep2.CNhs13500.11899-125E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11899-125E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2MockTreatedBr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsMockTreatedBiolRep2_CNhs13500_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9\ urlLabel FANTOM5 Details:\ Hep2CellsMockTreatedBiolRep2_CNhs13500_tpm_fwd Hep2MockTreatedBr2+ bigWig Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_forward 1 1829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep2.CNhs13500.11899-125E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11899-125E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2MockTreatedBr2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsMockTreatedBiolRep2_CNhs13500_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF755XCI ENCSR122LGV Signal bigWig Prostate gland tissue male adult (54 years) POLR2A ENCSR122LGV signal 2 1830 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/48161f4d-ddc7-498d-9a3b-ef224c46d53a/ENCFF755XCI.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (54 years) POLR2A ENCSR122LGV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR122LGV Signal\ track wgEncodeReg4TfChip_ENCFF755XCI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF270QYQ ENCSR210ZPC Peak bigBed 5 Smooth muscle cell originated from H9 H3K27ac peak 4 1830 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a1f0a689-a2c5-4280-a99f-43a10379c912/ENCFF270QYQ.bigBed\ color 181,145,0\ longLabel Smooth muscle cell originated from H9 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210ZPC Peak\ track wgEncodeReg4Epigenetics_ENCFF270QYQ\ type bigBed 5\ visibility squish\ Hep2CellsMockTreatedBiolRep2_CNhs13500_ctss_rev Hep2MockTreatedBr2- bigWig Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_reverse 0 1830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep2.CNhs13500.11899-125E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11899-125E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2MockTreatedBr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsMockTreatedBiolRep2_CNhs13500_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9\ urlLabel FANTOM5 Details:\ Hep2CellsMockTreatedBiolRep2_CNhs13500_tpm_rev Hep2MockTreatedBr2- bigWig Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_reverse 1 1830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep2.CNhs13500.11899-125E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells mock treated, biol_rep2_CNhs13500_11899-125E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11899-125E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2MockTreatedBr2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsMockTreatedBiolRep2_CNhs13500_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11899-125E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF687WSR ENCSR123GPC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP9 THAP9 peaks 4 1831 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/20/98bf2e34-3b68-41df-a819-6649e372979c/ENCFF687WSR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP9 THAP9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR123GPC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF687WSR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF118JRY ENCSR210ZPC Signal bigWig Smooth muscle cell originated from H9 H3K27ac signal 2 1831 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/fc941f36-988a-4a86-a722-5c5c6d04409b/ENCFF118JRY.bigWig\ color 181,145,0\ longLabel Smooth muscle cell originated from H9 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR210ZPC Signal\ track wgEncodeReg4Epigenetics_ENCFF118JRY\ type bigWig\ visibility full\ Hep2CellsMockTreatedBiolRep3_CNhs13501_ctss_fwd Hep2MockTreatedBr3+ bigWig Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_forward 0 1831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep3.CNhs13501.11900-125F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11900-125F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2MockTreatedBr3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsMockTreatedBiolRep3_CNhs13501_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1\ urlLabel FANTOM5 Details:\ Hep2CellsMockTreatedBiolRep3_CNhs13501_tpm_fwd Hep2MockTreatedBr3+ bigWig Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_forward 1 1831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep3.CNhs13501.11900-125F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11900-125F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2MockTreatedBr3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsMockTreatedBiolRep3_CNhs13501_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF735LWX ENCSR123GPC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP9 THAP9 ENCSR123GPC signal 2 1832 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/20/fb7eb5f1-ac3c-4278-922e-8b903f38413b/ENCFF735LWX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP9 THAP9 ENCSR123GPC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR123GPC Signal\ track wgEncodeReg4TfChip_ENCFF735LWX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF767LNC ENCSR211AFA Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 1832 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/3c156a66-3c36-4a9a-bd50-9710286c1eee/ENCFF767LNC.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211AFA Peak\ track wgEncodeReg4Epigenetics_ENCFF767LNC\ type bigBed 5\ visibility squish\ Hep2CellsMockTreatedBiolRep3_CNhs13501_ctss_rev Hep2MockTreatedBr3- bigWig Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_reverse 0 1832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep3.CNhs13501.11900-125F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11900-125F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2MockTreatedBr3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsMockTreatedBiolRep3_CNhs13501_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1\ urlLabel FANTOM5 Details:\ Hep2CellsMockTreatedBiolRep3_CNhs13501_tpm_rev Hep2MockTreatedBr3- bigWig Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_reverse 1 1832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20mock%20treated%2c%20biol_rep3.CNhs13501.11900-125F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells mock treated, biol_rep3_CNhs13501_11900-125F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11900-125F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2MockTreatedBr3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsMockTreatedBiolRep3_CNhs13501_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11900-125F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF179EDA ENCSR124AIG Peak bigBed 5 IMR-90 FOS peaks 4 1833 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ff1521ac-32a0-470a-9383-fff90d5ed51a/ENCFF179EDA.bigBed\ labelFields none\ longLabel IMR-90 FOS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR124AIG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF179EDA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF409LLA ENCSR211AFA Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 1833 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/2d6e26c6-1375-49f8-a2a2-704d304cbe20/ENCFF409LLA.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211AFA Signal\ track wgEncodeReg4Epigenetics_ENCFF409LLA\ type bigWig\ visibility full\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_ctss_fwd Hep2W/Streptococci5448Br1+ bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_forward 0 1833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep1.CNhs13477.11890-125D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11890-125D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/Streptococci5448Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_tpm_fwd Hep2W/Streptococci5448Br1+ bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_forward 1 1833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep1.CNhs13477.11890-125D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11890-125D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/Streptococci5448Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF375RBX ENCSR124AIG Signal bigWig IMR-90 FOS ENCSR124AIG signal 2 1834 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8eaaae39-3590-4763-a122-549f14f13110/ENCFF375RBX.bigWig\ color 130,163,45\ longLabel IMR-90 FOS ENCSR124AIG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR124AIG Signal\ track wgEncodeReg4TfChip_ENCFF375RBX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF280LAI ENCSR211MKD Peak bigBed 5 Neural progenitor cell H3K27ac peak 4 1834 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/558e4631-0888-4d2f-81e2-3930600015b7/ENCFF280LAI.bigBed\ color 181,145,0\ longLabel Neural progenitor cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211MKD Peak\ track wgEncodeReg4Epigenetics_ENCFF280LAI\ type bigBed 5\ visibility squish\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_ctss_rev Hep2W/Streptococci5448Br1- bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_reverse 0 1834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep1.CNhs13477.11890-125D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11890-125D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/Streptococci5448Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_tpm_rev Hep2W/Streptococci5448Br1- bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_reverse 1 1834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep1.CNhs13477.11890-125D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep1_CNhs13477_11890-125D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11890-125D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/Streptococci5448Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep1_CNhs13477_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11890-125D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF883OMO ENCSR124APT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYA NFYA peaks 4 1835 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/ff98978d-eeda-4d17-aa5a-f5c1086e27a9/ENCFF883OMO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYA NFYA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR124APT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF883OMO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF630UZH ENCSR211MKD Signal bigWig Neural progenitor cell H3K27ac signal 2 1835 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/bb9d88fd-edd5-407a-a866-be165bd83b03/ENCFF630UZH.bigWig\ color 181,145,0\ longLabel Neural progenitor cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211MKD Signal\ track wgEncodeReg4Epigenetics_ENCFF630UZH\ type bigWig\ visibility full\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_ctss_fwd Hep2W/Streptococci5448Br2+ bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_forward 0 1835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep2.CNhs13496.11891-125E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11891-125E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/Streptococci5448Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_tpm_fwd Hep2W/Streptococci5448Br2+ bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_forward 1 1835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep2.CNhs13496.11891-125E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11891-125E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/Streptococci5448Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF833TMH ENCSR124APT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYA NFYA ENCSR124APT signal 2 1836 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/4656dd01-b30c-4efe-9f3d-81de9d2b9b64/ENCFF833TMH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYA NFYA ENCSR124APT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR124APT Signal\ track wgEncodeReg4TfChip_ENCFF833TMH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF847BAO ENCSR211SBE Peak bigBed 5 Pancreas tissue female adult 61 years H3K4me3 peak 4 1836 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/bc1e2133-8250-4639-a954-d1630ab84c8c/ENCFF847BAO.bigBed\ color 255,0,0\ longLabel Pancreas tissue female adult 61 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211SBE Peak\ track wgEncodeReg4Epigenetics_ENCFF847BAO\ type bigBed 5\ visibility squish\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_ctss_rev Hep2W/Streptococci5448Br2- bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_reverse 0 1836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep2.CNhs13496.11891-125E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11891-125E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/Streptococci5448Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_tpm_rev Hep2W/Streptococci5448Br2- bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_reverse 1 1836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep2.CNhs13496.11891-125E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep2_CNhs13496_11891-125E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11891-125E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/Streptococci5448Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep2_CNhs13496_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11891-125E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF337WJB ENCSR124BJR Peak bigBed 5 K562 ETV6 peaks 4 1837 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/df5b7327-f502-497d-9bb1-c51fff5bcf36/ENCFF337WJB.bigBed\ labelFields none\ longLabel K562 ETV6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR124BJR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF337WJB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF682UWZ ENCSR211SBE Signal bigWig Pancreas tissue female adult 61 years H3K4me3 signal 2 1837 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/c1424c4e-e9f5-4f2b-b938-600f6a64a59c/ENCFF682UWZ.bigWig\ color 255,0,0\ longLabel Pancreas tissue female adult 61 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211SBE Signal\ track wgEncodeReg4Epigenetics_ENCFF682UWZ\ type bigWig\ visibility full\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_ctss_fwd Hep2W/Streptococci5448Br3+ bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_forward 0 1837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep3.CNhs13497.11892-125E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11892-125E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/Streptococci5448Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_tpm_fwd Hep2W/Streptococci5448Br3+ bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_forward 1 1837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep3.CNhs13497.11892-125E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11892-125E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/Streptococci5448Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF782KXB ENCSR124BJR Signal bigWig K562 ETV6 ENCSR124BJR signal 2 1838 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/04a418f2-d494-4913-a2ad-7ab6ae28182e/ENCFF782KXB.bigWig\ color 254,75,173\ longLabel K562 ETV6 ENCSR124BJR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR124BJR Signal\ track wgEncodeReg4TfChip_ENCFF782KXB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF186NOO ENCSR211SUT Peak bigBed 5 Heart right ventricle tissue male adult 55 years DNase peak 4 1838 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/d18473c6-ac9f-4767-bf20-a60a6f260e3f/ENCFF186NOO.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue male adult 55 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211SUT Peak\ track wgEncodeReg4Epigenetics_ENCFF186NOO\ type bigBed 5\ visibility squish\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_ctss_rev Hep2W/Streptococci5448Br3- bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_reverse 0 1838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep3.CNhs13497.11892-125E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11892-125E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/Streptococci5448Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_tpm_rev Hep2W/Streptococci5448Br3- bigWig Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_reverse 1 1838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%205448%2c%20biol_rep3.CNhs13497.11892-125E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain 5448, biol_rep3_CNhs13497_11892-125E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11892-125E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/Streptococci5448Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrain5448BiolRep3_CNhs13497_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11892-125E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF652PXN ENCSR125DAD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLX MLX peaks 4 1839 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/931f63ec-d1ac-43fa-b522-535915114ab8/ENCFF652PXN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLX MLX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125DAD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF652PXN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF824TGQ ENCSR211SUT Signal bigWig Heart right ventricle tissue male adult 55 years DNase signal 2 1839 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/d0a7c7dd-92a0-497f-9ca4-56332b2aa9d4/ENCFF824TGQ.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue male adult 55 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR211SUT Signal\ track wgEncodeReg4Epigenetics_ENCFF824TGQ\ type bigWig\ visibility full\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_ctss_fwd Hep2W/StreptococciJrs4Br1+ bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_forward 0 1839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep1.CNhs13478.11894-125E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11894-125E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/StreptococciJrs4Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_tpm_fwd Hep2W/StreptococciJrs4Br1+ bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_forward 1 1839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep1.CNhs13478.11894-125E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11894-125E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/StreptococciJrs4Br1+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF254PTL ENCSR125DAD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLX MLX ENCSR125DAD signal 2 1840 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/40580cbe-c583-4883-83a9-855fcba307da/ENCFF254PTL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLX MLX ENCSR125DAD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125DAD Signal\ track wgEncodeReg4TfChip_ENCFF254PTL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF492LVZ ENCSR212LYK Peak bigBed 5 Heart right ventricle tissue female adult 46 years ATAC peak 4 1840 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/d275f5b3-93dd-4e95-83cd-cbbfb5080c04/ENCFF492LVZ.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 46 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR212LYK Peak\ track wgEncodeReg4Epigenetics_ENCFF492LVZ\ type bigBed 5\ visibility squish\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_ctss_rev Hep2W/StreptococciJrs4Br1- bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_reverse 0 1840 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep1.CNhs13478.11894-125E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11894-125E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/StreptococciJrs4Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_tpm_rev Hep2W/StreptococciJrs4Br1- bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_reverse 1 1840 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep1.CNhs13478.11894-125E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep1_CNhs13478_11894-125E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11894-125E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/StreptococciJrs4Br1-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep1_CNhs13478_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11894-125E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF116KKR ENCSR125DKL Peak bigBed 5 SU-DHL-6 CTCF peaks 4 1841 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9d05bfee-dc5d-4b8f-8be2-c23230456411/ENCFF116KKR.bigBed\ labelFields none\ longLabel SU-DHL-6 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125DKL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF116KKR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF490QPE ENCSR212LYK Signal bigWig Heart right ventricle tissue female adult 46 years ATAC signal 2 1841 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/d9d64125-d477-4b0c-a890-75d4bfe1bcc8/ENCFF490QPE.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 46 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR212LYK Signal\ track wgEncodeReg4Epigenetics_ENCFF490QPE\ type bigWig\ visibility full\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_ctss_fwd Hep2W/StreptococciJrs4Br2+ bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_forward 0 1841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep2.CNhs13498.11895-125E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11895-125E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/StreptococciJrs4Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_tpm_fwd Hep2W/StreptococciJrs4Br2+ bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_forward 1 1841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep2.CNhs13498.11895-125E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11895-125E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/StreptococciJrs4Br2+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF350HLL ENCSR125DKL Signal bigWig SU-DHL-6 CTCF ENCSR125DKL signal 2 1842 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/54c5494f-2671-40e2-be92-cebf322ebf87/ENCFF350HLL.bigWig\ color 254,75,173\ longLabel SU-DHL-6 CTCF ENCSR125DKL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125DKL Signal\ track wgEncodeReg4TfChip_ENCFF350HLL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF243JLW ENCSR212VEN Peak bigBed 5 Placenta tissue male embryo DNase peak 4 1842 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/f0b094b1-d032-4193-a8f5-bf2840244962/ENCFF243JLW.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR212VEN Peak\ track wgEncodeReg4Epigenetics_ENCFF243JLW\ type bigBed 5\ visibility squish\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_ctss_rev Hep2W/StreptococciJrs4Br2- bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_reverse 0 1842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep2.CNhs13498.11895-125E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11895-125E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/StreptococciJrs4Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_tpm_rev Hep2W/StreptococciJrs4Br2- bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_reverse 1 1842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep2.CNhs13498.11895-125E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep2_CNhs13498_11895-125E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11895-125E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/StreptococciJrs4Br2-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep2_CNhs13498_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11895-125E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF236OPX ENCSR125DNC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF394 ZNF394 peaks 4 1843 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/543cedeb-18b8-45ed-ab01-8f0b462150ce/ENCFF236OPX.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF394 ZNF394 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125DNC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF236OPX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF690TSD ENCSR212VEN Signal bigWig Placenta tissue male embryo DNase signal 2 1843 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/0b1bacb9-a5d2-4b8b-93e5-28fc6c536986/ENCFF690TSD.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR212VEN Signal\ track wgEncodeReg4Epigenetics_ENCFF690TSD\ type bigWig\ visibility full\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_ctss_fwd Hep2W/StreptococciJrs4Br3+ bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_forward 0 1843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep3.CNhs13499.11896-125E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11896-125E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/StreptococciJrs4Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_tpm_fwd Hep2W/StreptococciJrs4Br3+ bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_forward 1 1843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep3.CNhs13499.11896-125E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11896-125E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/StreptococciJrs4Br3+\ subGroups sequenceTech=hCAGE category=cellLine strand=forward\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF526OYE ENCSR125DNC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF394 ZNF394 ENCSR125DNC signal 2 1844 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/98ba00cc-fb48-4895-a9d3-d9496b65ccb9/ENCFF526OYE.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF394 ZNF394 ENCSR125DNC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125DNC Signal\ track wgEncodeReg4TfChip_ENCFF526OYE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF561OXZ ENCSR213SMK Peak bigBed 5 Sigmoid colon tissue male child 3 years H3K27ac peak 4 1844 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/60905854-e7ed-409c-8553-35e8390dea2a/ENCFF561OXZ.bigBed\ color 181,145,0\ longLabel Sigmoid colon tissue male child 3 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR213SMK Peak\ track wgEncodeReg4Epigenetics_ENCFF561OXZ\ type bigBed 5\ visibility squish\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_ctss_rev Hep2W/StreptococciJrs4Br3- bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_reverse 0 1844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep3.CNhs13499.11896-125E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11896-125E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hep2W/StreptococciJrs4Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6\ urlLabel FANTOM5 Details:\ Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_tpm_rev Hep2W/StreptococciJrs4Br3- bigWig Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_reverse 1 1844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hep-2%20cells%20treated%20with%20Streptococci%20strain%20JRS4%2c%20biol_rep3.CNhs13499.11896-125E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hep-2 cells treated with Streptococci strain JRS4, biol_rep3_CNhs13499_11896-125E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11896-125E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hep2W/StreptococciJrs4Br3-\ subGroups sequenceTech=hCAGE category=cellLine strand=reverse\ track Hep2CellsTreatedWithStreptococciStrainJRS4BiolRep3_CNhs13499_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11896-125E6\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_ctss_fwd Cl:THP-1cyto+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_forward 0 1845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28cytoplasmic%20fraction%29.CNhs14556.14298-155B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14298-155B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:THP-1cyto+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_tpm_fwd Cl:THP-1cyto+ bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_forward 1 1845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28cytoplasmic%20fraction%29.CNhs14556.14298-155B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14298-155B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:THP-1cyto+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF420RBO ENCSR125NBL Peak bigBed 5 Neural progenitor cell originated from H9 CTCF peaks 4 1845 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f6b58f15-6bad-4b0b-9855-28d35db58017/ENCFF420RBO.bigBed\ labelFields none\ longLabel Neural progenitor cell originated from H9 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125NBL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF420RBO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF007ZXP ENCSR213SMK Signal bigWig Sigmoid colon tissue male child 3 years H3K27ac signal 2 1845 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/612882a6-ec08-4fb6-81ce-7dd4165e7b4a/ENCFF007ZXP.bigWig\ color 181,145,0\ longLabel Sigmoid colon tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR213SMK Signal\ track wgEncodeReg4Epigenetics_ENCFF007ZXP\ type bigWig\ visibility full\ AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_ctss_rev Cl:THP-1cyto- bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_reverse 0 1846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28cytoplasmic%20fraction%29.CNhs14556.14298-155B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14298-155B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cl:THP-1cyto-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5\ urlLabel FANTOM5 Details:\ AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_tpm_rev Cl:THP-1cyto- bigWig acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_reverse 1 1846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28cytoplasmic%20fraction%29.CNhs14556.14298-155B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction)_CNhs14556_14298-155B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14298-155B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cl:THP-1cyto-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track AcuteMyeloidLeukemiaFABM5CellLineTHP1CytoplasmicFraction_CNhs14556_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14298-155B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF700SCP ENCSR125NBL Signal bigWig Neural progenitor cell originated from H9 CTCF ENCSR125NBL signal 2 1846 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/778b2402-98f2-4cf3-9f7d-53537562d5d2/ENCFF700SCP.bigWig\ color 155,155,18\ longLabel Neural progenitor cell originated from H9 CTCF ENCSR125NBL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125NBL Signal\ track wgEncodeReg4TfChip_ENCFF700SCP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF900TBX ENCSR213WNV Peak bigBed 5 T-cell male adult 38 years DNase peak 4 1846 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/243ee853-762b-4115-9a02-582e1cb71261/ENCFF900TBX.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 38 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR213WNV Peak\ track wgEncodeReg4Epigenetics_ENCFF900TBX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF032AOW ENCSR125RFR Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 peaks 4 1847 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/c9dc9206-68d7-4b60-9309-e41721703b18/ENCFF032AOW.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125RFR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF032AOW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF751PBQ ENCSR213WNV Signal bigWig T-cell male adult 38 years DNase signal 2 1847 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/4936063e-fa3b-4c45-aa9b-793ecd323e50/ENCFF751PBQ.bigWig\ color 6,218,147\ longLabel T-cell male adult 38 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR213WNV Signal\ track wgEncodeReg4Epigenetics_ENCFF751PBQ\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_ctss_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_forward 0 1847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2%20%28nuclear%20fraction%29.CNhs12581.14332-155F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14332-155F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_tpm_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_forward 1 1847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor2%20%28cytoplasmic%20fraction%29.CNhs14558.14331-155F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14331-155F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF208TJQ ENCSR125RFR Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 ENCSR125RFR signal 2 1848 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/776b53c5-827b-4d2d-87d8-9f805876b29c/ENCFF208TJQ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 ENCSR125RFR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125RFR Signal\ track wgEncodeReg4TfChip_ENCFF208TJQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF150IPQ ENCSR213YPO Signal bigWig Right cardiac atrium tissue male adult 60 years ATAC signal 2 1848 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/b6382ebb-1feb-4373-9779-4dc0a0bd84eb/ENCFF150IPQ.bigWig\ color 2,199,185\ longLabel Right cardiac atrium tissue male adult 60 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR213YPO Signal\ track wgEncodeReg4Epigenetics_ENCFF150IPQ\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_ctss_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_forward 0 1848 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor2%20%28cytoplasmic%20fraction%29.CNhs14558.14331-155F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14331-155F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_tpm_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_forward 1 1848 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2%20%28nuclear%20fraction%29.CNhs12581.14332-155F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14332-155F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF399XKF ENCSR125ULS Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF561 ZNF561 peaks 4 1849 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/77522647-92dd-42a1-889a-c8ac37870db8/ENCFF399XKF.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF561 ZNF561 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125ULS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF399XKF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF287DNM ENCSR214EIV Peak bigBed 5 GM21619 ATAC peak 4 1849 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/6316de20-608c-4cb7-a7b3-e19271ad168f/ENCFF287DNM.bigBed\ color 2,199,185\ longLabel GM21619 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214EIV Peak\ track wgEncodeReg4Epigenetics_ENCFF287DNM\ type bigBed 5\ visibility squish\ FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_ctss_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_reverse 0 1849 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2%20%28nuclear%20fraction%29.CNhs12581.14332-155F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14332-155F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_tpm_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_reverse 1 1849 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor2%20%28cytoplasmic%20fraction%29.CNhs14558.14331-155F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14331-155F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF155NWG ENCSR125ULS Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF561 ZNF561 ENCSR125ULS signal 2 1850 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/32a5739d-cf87-401c-8cab-60cfc41069ee/ENCFF155NWG.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF561 ZNF561 ENCSR125ULS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125ULS Signal\ track wgEncodeReg4TfChip_ENCFF155NWG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF524PBI ENCSR214EIV Signal bigWig GM21619 ATAC signal 2 1850 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/429f56b7-09cb-4ff9-80c9-7bf7604d2494/ENCFF524PBI.bigWig\ color 2,199,185\ longLabel GM21619 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214EIV Signal\ track wgEncodeReg4Epigenetics_ENCFF524PBI\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_ctss_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_reverse 0 1850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor2%20%28cytoplasmic%20fraction%29.CNhs14558.14331-155F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction)_CNhs14558_14331-155F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14331-155F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor2CytoplasmicFraction_CNhs14558_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14331-155F2\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_tpm_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_reverse 1 1850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2%20%28nuclear%20fraction%29.CNhs12581.14332-155F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)_CNhs12581_14332-155F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14332-155F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor2NuclearFraction_CNhs12581_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14332-155F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF618FCM ENCSR125ZYC Peak bigBed 5 MCF-7 stably expressing KLF9 KLF9 peaks 4 1851 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a12eaa4a-c4ab-4eb3-a65c-a2e7ae36674e/ENCFF618FCM.bigBed\ labelFields none\ longLabel MCF-7 stably expressing KLF9 KLF9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125ZYC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF618FCM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF860REB ENCSR214NLQ Peak bigBed 5 Heart right ventricle tissue male adult 69 years DNase peak 4 1851 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/341af75e-c5dc-418a-86a1-bd3ad250de6c/ENCFF860REB.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue male adult 69 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214NLQ Peak\ track wgEncodeReg4Epigenetics_ENCFF860REB\ type bigBed 5\ visibility squish\ FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_ctss_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_forward 0 1851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3%20%28nuclear%20fraction%29.CNhs12400.14311-155C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14311-155C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_tpm_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_forward 1 1851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3%20%28nuclear%20fraction%29.CNhs12400.14311-155C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14311-155C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF254LRW ENCSR125ZYC Signal bigWig MCF-7 stably expressing KLF9 KLF9 ENCSR125ZYC signal 2 1852 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/17bcef95-3a79-452d-b8a2-11ce821d8754/ENCFF254LRW.bigWig\ color 65,171,173\ longLabel MCF-7 stably expressing KLF9 KLF9 ENCSR125ZYC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR125ZYC Signal\ track wgEncodeReg4TfChip_ENCFF254LRW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF315VTA ENCSR214NLQ Signal bigWig Heart right ventricle tissue male adult 69 years DNase signal 2 1852 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/6b0b0bea-5517-4831-ba6b-f3abbe260f7f/ENCFF315VTA.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue male adult 69 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214NLQ Signal\ track wgEncodeReg4Epigenetics_ENCFF315VTA\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_ctss_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_forward 0 1852 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor3%20%28cytoplasmic%20fraction%29.CNhs14559.14310-155C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14310-155C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_tpm_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_forward 1 1852 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor3%20%28cytoplasmic%20fraction%29.CNhs14559.14310-155C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14310-155C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF731YBD ENCSR126FZN Peak bigBed 5 K562 stably expressing CAVIN1 PTRF peaks 4 1853 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/9ce739af-6655-42ad-8626-45d7ed14d4bb/ENCFF731YBD.bigBed\ labelFields none\ longLabel K562 stably expressing CAVIN1 PTRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR126FZN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF731YBD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF112WEE ENCSR214NMO Peak bigBed 5 SJSA1 H3K4me3 peak 4 1853 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/7aab82a2-488c-4787-a01c-be7edfe9ebe1/ENCFF112WEE.bigBed\ color 255,0,0\ longLabel SJSA1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214NMO Peak\ track wgEncodeReg4Epigenetics_ENCFF112WEE\ type bigBed 5\ visibility squish\ FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_ctss_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_reverse 0 1853 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3%20%28nuclear%20fraction%29.CNhs12400.14311-155C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14311-155C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_tpm_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_reverse 1 1853 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3%20%28nuclear%20fraction%29.CNhs12400.14311-155C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3 (nuclear fraction)_CNhs12400_14311-155C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14311-155C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor3NuclearFraction_CNhs12400_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14311-155C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF275ILT ENCSR126FZN Signal bigWig K562 stably expressing CAVIN1 PTRF ENCSR126FZN signal 2 1854 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/1b27f395-8be5-4699-a3b8-a15502f8d704/ENCFF275ILT.bigWig\ color 254,75,173\ longLabel K562 stably expressing CAVIN1 PTRF ENCSR126FZN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR126FZN Signal\ track wgEncodeReg4TfChip_ENCFF275ILT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF152TPG ENCSR214NMO Signal bigWig SJSA1 H3K4me3 signal 2 1854 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/ccfe7756-f402-437f-97b8-cfd6d5e58347/ENCFF152TPG.bigWig\ color 255,0,0\ longLabel SJSA1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214NMO Signal\ track wgEncodeReg4Epigenetics_ENCFF152TPG\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_ctss_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_reverse 0 1854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor3%20%28cytoplasmic%20fraction%29.CNhs14559.14310-155C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14310-155C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_tpm_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_reverse 1 1854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%20donor3%20%28cytoplasmic%20fraction%29.CNhs14559.14310-155C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction)_CNhs14559_14310-155C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14310-155C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastAorticAdventitialDonor3CytoplasmicFraction_CNhs14559_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14310-155C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF465LTH ENCSR126YEB Peak bigBed 5 MCF-7 FOXA1 peaks 4 1855 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/749d29d3-1e3a-41e0-a7ce-eea3d08b7e9a/ENCFF465LTH.bigBed\ labelFields none\ longLabel MCF-7 FOXA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR126YEB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF465LTH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF841BWZ ENCSR214QEO Peak bigBed 5 Large intestine tissue female embryo 91 days DNase peak 4 1855 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/64d4f1fa-ac75-4f6b-bbda-3f3a7f7f87a0/ENCFF841BWZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214QEO Peak\ track wgEncodeReg4Epigenetics_ENCFF841BWZ\ type bigBed 5\ visibility squish\ FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_ctss_fwd FibroSkinDystrophiaMyotonicaNucfracD1+ bigWig Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_forward 0 1855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1%20%28nuclear%20fraction%29.CNhs12405.14329-155E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14329-155E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_tpm_fwd FibroSkinDystrophiaMyotonicaNucfracD1+ bigWig Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_forward 1 1855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1%20%28nuclear%20fraction%29.CNhs12405.14329-155E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14329-155E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF795BHZ ENCSR126YEB Signal bigWig MCF-7 FOXA1 ENCSR126YEB signal 2 1856 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/f5f232a6-b5a7-42e5-bd14-d2d408a618c7/ENCFF795BHZ.bigWig\ color 65,171,173\ longLabel MCF-7 FOXA1 ENCSR126YEB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR126YEB Signal\ track wgEncodeReg4TfChip_ENCFF795BHZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF276JCL ENCSR214QEO Signal bigWig Large intestine tissue female embryo 91 days DNase signal 2 1856 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/140193bb-9bd6-47fb-8ba4-d7bf76b904ad/ENCFF276JCL.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214QEO Signal\ track wgEncodeReg4Epigenetics_ENCFF276JCL\ type bigWig\ visibility full\ FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD1- bigWig Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_reverse 0 1856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1%20%28nuclear%20fraction%29.CNhs12405.14329-155E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14329-155E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD1- bigWig Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_reverse 1 1856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1%20%28nuclear%20fraction%29.CNhs12405.14329-155E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction)_CNhs12405_14329-155E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14329-155E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor1NuclearFraction_CNhs12405_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14329-155E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF660NHX ENCSR127IHN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737 ZNF737 peaks 4 1857 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/156f5cc1-1800-42d7-90b0-eaccc80494c4/ENCFF660NHX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737 ZNF737 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR127IHN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF660NHX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF184MUO ENCSR214QZO Peak bigBed 5 K562 treated with 1 μM Crizotinib for 4 hours ATAC peak 4 1857 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/3ce4232d-3a15-4745-b277-3707d70645a4/ENCFF184MUO.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214QZO Peak\ track wgEncodeReg4Epigenetics_ENCFF184MUO\ type bigBed 5\ visibility squish\ FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_ctss_fwd FibroSkinDystrophiaMyotonicaNucfracD3+ bigWig Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_forward 0 1857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3%20%28nuclear%20fraction%29.CNhs12399.14308-155C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14308-155C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_tpm_fwd FibroSkinDystrophiaMyotonicaNucfracD3+ bigWig Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_forward 1 1857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3%20%28nuclear%20fraction%29.CNhs12399.14308-155C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14308-155C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF075NSV ENCSR127IHN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737 ZNF737 ENCSR127IHN signal 2 1858 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/30da9390-3b08-410a-bc86-6054ffd4d5ea/ENCFF075NSV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737 ZNF737 ENCSR127IHN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR127IHN Signal\ track wgEncodeReg4TfChip_ENCFF075NSV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477ATH ENCSR214QZO Signal bigWig K562 treated with 1 μM Crizotinib for 4 hours ATAC signal 2 1858 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/240f5b11-e6b2-4faa-914b-8863beeb09e3/ENCFF477ATH.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214QZO Signal\ track wgEncodeReg4Epigenetics_ENCFF477ATH\ type bigWig\ visibility full\ FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD3- bigWig Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_reverse 0 1858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3%20%28nuclear%20fraction%29.CNhs12399.14308-155C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14308-155C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD3- bigWig Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_reverse 1 1858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3%20%28nuclear%20fraction%29.CNhs12399.14308-155C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)_CNhs12399_14308-155C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14308-155C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3NuclearFraction_CNhs12399_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14308-155C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF011YUL ENCSR127NBZ Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG ERG peaks 4 1859 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/f0e0bf40-67f9-447e-ac36-20cb3c6987c5/ENCFF011YUL.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG ERG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR127NBZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF011YUL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF773KAP ENCSR214SFA Peak bigBed 5 K562 treated with 1 μM AR-42 for 12 hours ATAC peak 4 1859 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/3c12c318-f4cc-4114-8369-3cfa7dab7057/ENCFF773KAP.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 12 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214SFA Peak\ track wgEncodeReg4Epigenetics_ENCFF773KAP\ type bigBed 5\ visibility squish\ FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_ctss_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_forward 0 1859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1%20%28nuclear%20fraction%29.CNhs12403.14323-155E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14323-155E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_tpm_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_forward 1 1859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1%20%28nuclear%20fraction%29.CNhs12403.14323-155E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14323-155E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF590EIX ENCSR127NBZ Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG ERG ENCSR127NBZ signal 2 1860 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/25e368ce-e665-4994-8d86-c2575cd17df8/ENCFF590EIX.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG ERG ENCSR127NBZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR127NBZ Signal\ track wgEncodeReg4TfChip_ENCFF590EIX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF754GEP ENCSR214SFA Signal bigWig K562 treated with 1 μM AR-42 for 12 hours ATAC signal 2 1860 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/6baf668f-8b37-44d3-99c1-6409f01f5149/ENCFF754GEP.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 12 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214SFA Signal\ track wgEncodeReg4Epigenetics_ENCFF754GEP\ type bigWig\ visibility full\ FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_ctss_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_reverse 0 1860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1%20%28nuclear%20fraction%29.CNhs12403.14323-155E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14323-155E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_tpm_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_reverse 1 1860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1%20%28nuclear%20fraction%29.CNhs12403.14323-155E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1 (nuclear fraction)_CNhs12403_14323-155E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14323-155E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor1NuclearFraction_CNhs12403_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14323-155E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF928THX ENCSR127XTZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1B HNF1B peaks 4 1861 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/89c95498-0b8f-425f-aee9-461da0be9ab1/ENCFF928THX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1B HNF1B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR127XTZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF928THX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF437IBY ENCSR214UZE Peak bigBed 5 Skin epidermis tissue female adult 71 years H3K27ac peak 4 1861 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/7ebc82da-31e2-433b-b966-942576115f9d/ENCFF437IBY.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue female adult 71 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214UZE Peak\ track wgEncodeReg4Epigenetics_ENCFF437IBY\ type bigBed 5\ visibility squish\ FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_ctss_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_forward 0 1861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2%20%28nuclear%20fraction%29.CNhs12582.14302-155B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14302-155B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_tpm_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_forward 1 1861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2%20%28nuclear%20fraction%29.CNhs12582.14302-155B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14302-155B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF187FJQ ENCSR127XTZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1B HNF1B ENCSR127XTZ signal 2 1862 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/2b19481a-05dc-401b-9997-2b1f62d26ce1/ENCFF187FJQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1B HNF1B ENCSR127XTZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR127XTZ Signal\ track wgEncodeReg4TfChip_ENCFF187FJQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF529BXA ENCSR214UZE Signal bigWig Skin epidermis tissue female adult 71 years H3K27ac signal 2 1862 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/c9bec261-4260-402f-b6e7-f6ad2a162c53/ENCFF529BXA.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue female adult 71 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214UZE Signal\ track wgEncodeReg4Epigenetics_ENCFF529BXA\ type bigWig\ visibility full\ FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_ctss_rev FibroSkinNormalNucfracD2- bigWig Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_reverse 0 1862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2%20%28nuclear%20fraction%29.CNhs12582.14302-155B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14302-155B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_tpm_rev FibroSkinNormalNucfracD2- bigWig Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_reverse 1 1862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2%20%28nuclear%20fraction%29.CNhs12582.14302-155B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor2 (nuclear fraction)_CNhs12582_14302-155B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14302-155B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor2NuclearFraction_CNhs12582_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14302-155B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF236NMN ENCSR130NZQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4 PRDM4 peaks 4 1863 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/7819a674-b292-46e0-aa1f-f1bb26ed8501/ENCFF236NMN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4 PRDM4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130NZQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF236NMN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF701KMG ENCSR214XJO Peak bigBed 5 Lung tissue female embryo 120 days DNase peak 4 1863 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/c8641add-3fa2-4eee-aad2-1c17ef9a4364/ENCFF701KMG.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue female embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214XJO Peak\ track wgEncodeReg4Epigenetics_ENCFF701KMG\ type bigBed 5\ visibility squish\ FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_forward 0 1863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1%20%28nuclear%20fraction%29.CNhs12404.14326-155E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14326-155E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_forward 1 1863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1%20%28nuclear%20fraction%29.CNhs12404.14326-155E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14326-155E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF630IVP ENCSR130NZQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4 PRDM4 ENCSR130NZQ signal 2 1864 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/6825ad1d-8bd8-44b6-9e10-6a16c03d9fd0/ENCFF630IVP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4 PRDM4 ENCSR130NZQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130NZQ Signal\ track wgEncodeReg4TfChip_ENCFF630IVP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF411YZS ENCSR214XJO Signal bigWig Lung tissue female embryo 120 days DNase signal 2 1864 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/478e6a39-3637-4feb-b44f-70dd4b01aa65/ENCFF411YZS.bigWig\ color 6,218,147\ longLabel Lung tissue female embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR214XJO Signal\ track wgEncodeReg4Epigenetics_ENCFF411YZS\ type bigWig\ visibility full\ FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_reverse 0 1864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1%20%28nuclear%20fraction%29.CNhs12404.14326-155E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14326-155E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_reverse 1 1864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1%20%28nuclear%20fraction%29.CNhs12404.14326-155E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)_CNhs12404_14326-155E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14326-155E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1NuclearFraction_CNhs12404_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14326-155E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF998LHF ENCSR130PDE Peak bigBed 5 K562 stably expressing NR4A1 NR4A1 peaks 4 1865 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/94167b1f-811e-4b45-8c58-4d081604bcec/ENCFF998LHF.bigBed\ labelFields none\ longLabel K562 stably expressing NR4A1 NR4A1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130PDE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF998LHF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF314XPI ENCSR215DXT Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak 4 1865 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9f06d12b-d463-475b-a5bd-c0e346eedcec/ENCFF314XPI.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR215DXT Peak\ track wgEncodeReg4Epigenetics_ENCFF314XPI\ type bigBed 5\ visibility squish\ FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_forward 0 1865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3%20%28nuclear%20fraction%29.CNhs12398.14305-155C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14305-155C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_forward 1 1865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3%20%28nuclear%20fraction%29.CNhs12398.14305-155C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14305-155C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF669DYX ENCSR130PDE Signal bigWig K562 stably expressing NR4A1 NR4A1 ENCSR130PDE signal 2 1866 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/1dbf27a8-950a-42c6-b20f-27e721eb635c/ENCFF669DYX.bigWig\ color 254,75,173\ longLabel K562 stably expressing NR4A1 NR4A1 ENCSR130PDE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130PDE Signal\ track wgEncodeReg4TfChip_ENCFF669DYX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF305XCA ENCSR215DXT Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 1866 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/40d39711-0c9f-438a-9185-ddea09abcf3c/ENCFF305XCA.bigWig\ color 6,218,147\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR215DXT Signal\ track wgEncodeReg4Epigenetics_ENCFF305XCA\ type bigWig\ visibility full\ FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_reverse 0 1866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3%20%28nuclear%20fraction%29.CNhs12398.14305-155C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14305-155C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_reverse 1 1866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3%20%28nuclear%20fraction%29.CNhs12398.14305-155C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction)_CNhs12398_14305-155C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14305-155C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3NuclearFraction_CNhs12398_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14305-155C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF329FBJ ENCSR130VQL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PPARG PPARG peaks 4 1867 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a27a98d1-2f56-4c5b-a403-67b745901b90/ENCFF329FBJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PPARG PPARG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130VQL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF329FBJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF200UEF ENCSR215EFA Peak bigBed 5 Chorion tissue male embryo 16 weeks H3K4me3 peak 4 1867 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/775d6f73-8dea-4e9d-8414-e613b82b4fbc/ENCFF200UEF.bigBed\ color 255,0,0\ longLabel Chorion tissue male embryo 16 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR215EFA Peak\ track wgEncodeReg4Epigenetics_ENCFF200UEF\ type bigBed 5\ visibility squish\ FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_ctss_fwd FibrosSkinD1+ bigWig Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_forward 0 1867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor1%20%28cytoplasmic%20fraction%29.CNhs14560.14322-155E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14322-155E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibrosSkinD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_tpm_fwd FibrosSkinD1+ bigWig Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_forward 1 1867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor1%20%28cytoplasmic%20fraction%29.CNhs14560.14322-155E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14322-155E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibrosSkinD1+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF848CIY ENCSR130VQL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PPARG PPARG ENCSR130VQL signal 2 1868 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a558527f-a7cd-4c74-be76-9970fd93d038/ENCFF848CIY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PPARG PPARG ENCSR130VQL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130VQL Signal\ track wgEncodeReg4TfChip_ENCFF848CIY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF976KIV ENCSR215EFA Signal bigWig Chorion tissue male embryo 16 weeks H3K4me3 signal 2 1868 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/1c18aba0-a8bd-418f-a4db-8efcc930bbd0/ENCFF976KIV.bigWig\ color 255,0,0\ longLabel Chorion tissue male embryo 16 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR215EFA Signal\ track wgEncodeReg4Epigenetics_ENCFF976KIV\ type bigWig\ visibility full\ FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_ctss_rev FibrosSkinD1- bigWig Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_reverse 0 1868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor1%20%28cytoplasmic%20fraction%29.CNhs14560.14322-155E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14322-155E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibrosSkinD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_tpm_rev FibrosSkinD1- bigWig Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_reverse 1 1868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor1%20%28cytoplasmic%20fraction%29.CNhs14560.14322-155E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin, normal donor1 (cytoplasmic fraction)_CNhs14560_14322-155E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14322-155E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibrosSkinD1-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor1CytoplasmicFraction_CNhs14560_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14322-155E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF427OHT ENCSR130ZAR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691 ZNF691 peaks 4 1869 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/6053bdc1-5bb7-4309-af8a-81b228e7e1ab/ENCFF427OHT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691 ZNF691 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130ZAR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF427OHT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF727TTT ENCSR215QQE Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 1869 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/aa05503d-eb2a-48ca-ae8f-661eed792a07/ENCFF727TTT.bigBed\ color 255,0,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR215QQE Peak\ track wgEncodeReg4Epigenetics_ENCFF727TTT\ type bigBed 5\ visibility squish\ FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_ctss_fwd FibrosSkinD2+ bigWig Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_forward 0 1869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor2%20%28cytoplasmic%20fraction%29.CNhs14561.14301-155B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14301-155B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibrosSkinD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_tpm_fwd FibrosSkinD2+ bigWig Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_forward 1 1869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor2%20%28cytoplasmic%20fraction%29.CNhs14561.14301-155B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14301-155B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibrosSkinD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF526IFY ENCSR130ZAR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691 ZNF691 ENCSR130ZAR signal 2 1870 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d815b8a7-06a5-4d23-b662-213c5dee3ff9/ENCFF526IFY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691 ZNF691 ENCSR130ZAR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR130ZAR Signal\ track wgEncodeReg4TfChip_ENCFF526IFY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF005KPT ENCSR215QQE Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 1870 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/8ce5d8bc-4b30-4638-ada1-3a1b7a90afa9/ENCFF005KPT.bigWig\ color 255,0,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR215QQE Signal\ track wgEncodeReg4Epigenetics_ENCFF005KPT\ type bigWig\ visibility full\ FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_ctss_rev FibrosSkinD2- bigWig Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_reverse 0 1870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor2%20%28cytoplasmic%20fraction%29.CNhs14561.14301-155B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14301-155B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibrosSkinD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_tpm_rev FibrosSkinD2- bigWig Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_reverse 1 1870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%2c%20normal%20donor2%20%28cytoplasmic%20fraction%29.CNhs14561.14301-155B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin, normal donor2 (cytoplasmic fraction)_CNhs14561_14301-155B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14301-155B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibrosSkinD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track FibroblastSkinNormalDonor2CytoplasmicFraction_CNhs14561_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14301-155B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF404ZHM ENCSR131FFJ Peak bigBed 5 GM23248 EZH2 peaks 4 1871 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/59d56342-47f2-49d7-84b6-0573e9ab95f3/ENCFF404ZHM.bigBed\ labelFields none\ longLabel GM23248 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR131FFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF404ZHM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644BOA ENCSR216YPQ Peak bigBed 5 Heart right ventricle tissue male adult 73 years H3K4me3 peak 4 1871 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/26059738-76a2-4e0b-b973-77fec68a226f/ENCFF644BOA.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 73 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR216YPQ Peak\ track wgEncodeReg4Epigenetics_ENCFF644BOA\ type bigBed 5\ visibility squish\ PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_ctss_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_forward 0 1871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%20donor2%20%28cytoplasmic%20fraction%29.CNhs14562.14319-155D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14319-155D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_tpm_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_forward 1 1871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%20donor2%20%28cytoplasmic%20fraction%29.CNhs14562.14319-155D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14319-155D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF548EWP ENCSR131FFJ Signal bigWig GM23248 EZH2 ENCSR131FFJ signal 2 1872 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/f52a97ae-d654-4d39-aef7-6d740952dd3f/ENCFF548EWP.bigWig\ color 127,133,209\ longLabel GM23248 EZH2 ENCSR131FFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR131FFJ Signal\ track wgEncodeReg4TfChip_ENCFF548EWP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF566UBC ENCSR216YPQ Signal bigWig Heart right ventricle tissue male adult 73 years H3K4me3 signal 2 1872 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/795e917b-8fcd-48ce-b05e-defcd2fb1fa9/ENCFF566UBC.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 73 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR216YPQ Signal\ track wgEncodeReg4Epigenetics_ENCFF566UBC\ type bigWig\ visibility full\ PreadipocyteBreastDonor2NuclearFraction_CNhs12584_ctss_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_forward 0 1872 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2%20%28nuclear%20fraction%29.CNhs12584.14320-155D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14320-155D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track PreadipocyteBreastDonor2NuclearFraction_CNhs12584_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2NuclearFraction_CNhs12584_tpm_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_forward 1 1872 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2%20%28nuclear%20fraction%29.CNhs12584.14320-155D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14320-155D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track PreadipocyteBreastDonor2NuclearFraction_CNhs12584_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF098HBD ENCSR132XRW Peak bigBed 5 Transverse colon tissue male adult (54 years) POLR2A peaks 4 1873 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/947c1aeb-53e4-40c5-afda-e2d4c833edc7/ENCFF098HBD.bigBed\ labelFields none\ longLabel Transverse colon tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR132XRW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF098HBD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF048BHP ENCSR217AJC Peak bigBed 5 Brain organoid female embryo 5 days, 180 days post differentiation H3K27ac peak 4 1873 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/27/4e331a0d-665d-42d7-b672-ee2acd3adbf2/ENCFF048BHP.bigBed\ color 181,145,0\ longLabel Brain organoid female embryo 5 days, 180 days post differentiation H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217AJC Peak\ track wgEncodeReg4Epigenetics_ENCFF048BHP\ type bigBed 5\ visibility squish\ PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_ctss_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_reverse 0 1873 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%20donor2%20%28cytoplasmic%20fraction%29.CNhs14562.14319-155D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14319-155D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_tpm_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_reverse 1 1873 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%20donor2%20%28cytoplasmic%20fraction%29.CNhs14562.14319-155D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast donor2 (cytoplasmic fraction)_CNhs14562_14319-155D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14319-155D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track PreadipocyteBreastDonor2CytoplasmicFraction_CNhs14562_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14319-155D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF031XGK ENCSR132XRW Signal bigWig Transverse colon tissue male adult (54 years) POLR2A ENCSR132XRW signal 2 1874 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/9b61b26f-b8e5-478e-851e-dfede6eb5a7b/ENCFF031XGK.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (54 years) POLR2A ENCSR132XRW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR132XRW Signal\ track wgEncodeReg4TfChip_ENCFF031XGK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF143NJI ENCSR217AJC Signal bigWig Brain organoid female embryo 5 days, 180 days post differentiation H3K27ac signal 2 1874 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3a9c5e6b-4a14-463b-a19e-e3d40cf759d8/ENCFF143NJI.bigWig\ color 181,145,0\ longLabel Brain organoid female embryo 5 days, 180 days post differentiation H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217AJC Signal\ track wgEncodeReg4Epigenetics_ENCFF143NJI\ type bigWig\ visibility full\ PreadipocyteBreastDonor2NuclearFraction_CNhs12584_ctss_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_reverse 0 1874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2%20%28nuclear%20fraction%29.CNhs12584.14320-155D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14320-155D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track PreadipocyteBreastDonor2NuclearFraction_CNhs12584_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2NuclearFraction_CNhs12584_tpm_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_reverse 1 1874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2%20%28nuclear%20fraction%29.CNhs12584.14320-155D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2 (nuclear fraction)_CNhs12584_14320-155D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14320-155D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track PreadipocyteBreastDonor2NuclearFraction_CNhs12584_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14320-155D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF150FXW ENCSR133AFF Peak bigBed 5 Lower lobe of left lung tissue female adult (59 years) CTCF peaks 4 1875 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/6b014f26-526a-4713-a22c-567a9864993c/ENCFF150FXW.bigBed\ labelFields none\ longLabel Lower lobe of left lung tissue female adult (59 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR133AFF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF150FXW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF984NBX ENCSR217OHA Peak bigBed 5 Head of caudate nucleus tissue female adult 90 or above years DNase peak 4 1875 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/e0101238-d108-465e-84b0-c52bebb8c5f8/ENCFF984NBX.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217OHA Peak\ track wgEncodeReg4Epigenetics_ENCFF984NBX\ type bigBed 5\ visibility squish\ SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_ctss_fwd SmallAirwayEpithelialCellsD2+ bigWig Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_forward 0 1875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28nuclear%20fraction%29.CNhs14565.14335-155F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14335-155F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_tpm_fwd SmallAirwayEpithelialCellsD2+ bigWig Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_forward 1 1875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28cytoplasmic%20fraction%29.CNhs14564.14334-155F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14334-155F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF033FEG ENCSR133AFF Signal bigWig Lower lobe of left lung tissue female adult (59 years) CTCF ENCSR133AFF signal 2 1876 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5ddea903-47ee-42cc-851b-612747874a3a/ENCFF033FEG.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue female adult (59 years) CTCF ENCSR133AFF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR133AFF Signal\ track wgEncodeReg4TfChip_ENCFF033FEG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF023UNU ENCSR217OHA Signal bigWig Head of caudate nucleus tissue female adult 90 or above years DNase signal 2 1876 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/ccef3c70-0ce2-4f33-b068-ffe862cf4ad1/ENCFF023UNU.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217OHA Signal\ track wgEncodeReg4Epigenetics_ENCFF023UNU\ type bigWig\ visibility full\ SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_ctss_fwd SmallAirwayEpithelialCellsD2+ bigWig Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_forward 0 1876 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28cytoplasmic%20fraction%29.CNhs14564.14334-155F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14334-155F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_tpm_fwd SmallAirwayEpithelialCellsD2+ bigWig Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_forward 1 1876 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28nuclear%20fraction%29.CNhs14565.14335-155F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14335-155F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF345CRU ENCSR134QIE Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP3 ZFP3 peaks 4 1877 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/2dc6720a-4add-4d3c-8234-9a137668a262/ENCFF345CRU.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP3 ZFP3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR134QIE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF345CRU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF979ZVU ENCSR217PZP Peak bigBed 5 T-cell male adult 26 years DNase peak 4 1877 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1e38efbe-e6d9-454f-8365-fd8940e49e58/ENCFF979ZVU.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 26 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217PZP Peak\ track wgEncodeReg4Epigenetics_ENCFF979ZVU\ type bigBed 5\ visibility squish\ SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_ctss_rev SmallAirwayEpithelialCellsD2- bigWig Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_reverse 0 1877 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28nuclear%20fraction%29.CNhs14565.14335-155F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14335-155F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_tpm_rev SmallAirwayEpithelialCellsD2- bigWig Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_reverse 1 1877 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28cytoplasmic%20fraction%29.CNhs14564.14334-155F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14334-155F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF398RSV ENCSR134QIE Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP3 ZFP3 ENCSR134QIE signal 2 1878 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/2c8fa519-2097-4aab-bc02-88baa80c11b3/ENCFF398RSV.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP3 ZFP3 ENCSR134QIE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR134QIE Signal\ track wgEncodeReg4TfChip_ENCFF398RSV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF950WGH ENCSR217PZP Signal bigWig T-cell male adult 26 years DNase signal 2 1878 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/75b9fd4a-57a1-4958-b37b-e018a5a9436b/ENCFF950WGH.bigWig\ color 6,218,147\ longLabel T-cell male adult 26 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217PZP Signal\ track wgEncodeReg4Epigenetics_ENCFF950WGH\ type bigWig\ visibility full\ SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_ctss_rev SmallAirwayEpithelialCellsD2- bigWig Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_reverse 0 1878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28cytoplasmic%20fraction%29.CNhs14564.14334-155F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells donor2 (cytoplasmic fraction)_CNhs14564_14334-155F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14334-155F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor2CytoplasmicFraction_CNhs14564_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14334-155F5\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_tpm_rev SmallAirwayEpithelialCellsD2- bigWig Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_reverse 1 1878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor2%20%28nuclear%20fraction%29.CNhs14565.14335-155F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells donor2 (nuclear fraction)_CNhs14565_14335-155F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14335-155F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor2NuclearFraction_CNhs14565_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14335-155F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF148IMD ENCSR135ANT Peak bigBed 5 MCF-7 NRF1 peaks 4 1879 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/54fdb492-a2e8-43a1-b7d7-cf3eeacb019c/ENCFF148IMD.bigBed\ labelFields none\ longLabel MCF-7 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR135ANT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF148IMD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF582TKS ENCSR217QAB Peak bigBed 5 K562 treated with 10 nM Bortezomib for 4 hours ATAC peak 4 1879 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/8897b0c7-dd1f-4827-a911-81e58f13a87b/ENCFF582TKS.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Bortezomib for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217QAB Peak\ track wgEncodeReg4Epigenetics_ENCFF582TKS\ type bigBed 5\ visibility squish\ SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_ctss_fwd SmallAirwayEpithelialCellsD3+ bigWig Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_forward 0 1879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor3%20%28cytoplasmic%20fraction%29.CNhs14563.14316-155D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14316-155D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor3NuclearFraction_CNhs12583_tpm_fwd SmallAirwayEpithelialCellsD3+ bigWig Small Airway Epithelial Cells, donor3 (nuclear fraction)_CNhs12583_14317-155D6_forward 1 1879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14317-155D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor3%20%28nuclear%20fraction%29.CNhs12583.14317-155D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor3 (nuclear fraction)_CNhs12583_14317-155D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14317-155D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor3NuclearFraction_CNhs12583_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14317-155D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF816RHK ENCSR135ANT Signal bigWig MCF-7 NRF1 ENCSR135ANT signal 2 1880 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/09/47094a47-7650-42e2-9f30-1aa023216197/ENCFF816RHK.bigWig\ color 65,171,173\ longLabel MCF-7 NRF1 ENCSR135ANT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR135ANT Signal\ track wgEncodeReg4TfChip_ENCFF816RHK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF911CJZ ENCSR217QAB Signal bigWig K562 treated with 10 nM Bortezomib for 4 hours ATAC signal 2 1880 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/ee76b017-cd5b-4d25-ae42-75294abb8d72/ENCFF911CJZ.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Bortezomib for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217QAB Signal\ track wgEncodeReg4Epigenetics_ENCFF911CJZ\ type bigWig\ visibility full\ SmallAirwayEpithelialCellsDonor3NuclearFraction_CNhs12583_ctss_fwd SmallAirwayEpithelialCellsD3+ bigWig Small Airway Epithelial Cells, donor3 (nuclear fraction)_CNhs12583_14317-155D6_forward 0 1880 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14317-155D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor3%20%28nuclear%20fraction%29.CNhs12583.14317-155D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor3 (nuclear fraction)_CNhs12583_14317-155D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14317-155D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor3NuclearFraction_CNhs12583_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14317-155D6\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_tpm_fwd SmallAirwayEpithelialCellsD3+ bigWig Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_forward 1 1880 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor3%20%28cytoplasmic%20fraction%29.CNhs14563.14316-155D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14316-155D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF518ZRY ENCSR136OFY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 peaks 4 1881 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/878514ea-053d-4237-9abb-c0ab9a0f5cfc/ENCFF518ZRY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR136OFY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF518ZRY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF891AUN ENCSR217RVH Peak bigBed 5 Fibroblast of skin of right quadriceps male embryo 97 days DNase peak 4 1881 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/c8b48c99-11de-44cc-92a0-6f91cef3ff30/ENCFF891AUN.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of skin of right quadriceps male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217RVH Peak\ track wgEncodeReg4Epigenetics_ENCFF891AUN\ type bigBed 5\ visibility squish\ SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_ctss_rev SmallAirwayEpithelialCellsD3- bigWig Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_reverse 0 1881 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor3%20%28cytoplasmic%20fraction%29.CNhs14563.14316-155D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14316-155D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor3NuclearFraction_CNhs12583_tpm_rev SmallAirwayEpithelialCellsD3- bigWig Small Airway Epithelial Cells, donor3 (nuclear fraction)_CNhs12583_14317-155D6_reverse 1 1881 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14317-155D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor3%20%28nuclear%20fraction%29.CNhs12583.14317-155D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells, donor3 (nuclear fraction)_CNhs12583_14317-155D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14317-155D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor3NuclearFraction_CNhs12583_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14317-155D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF780VCE ENCSR136OFY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 ENCSR136OFY signal 2 1882 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/08321480-fcb0-465e-b475-5e8386b14944/ENCFF780VCE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 ENCSR136OFY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR136OFY Signal\ track wgEncodeReg4TfChip_ENCFF780VCE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF390NQU ENCSR217RVH Signal bigWig Fibroblast of skin of right quadriceps male embryo 97 days DNase signal 2 1882 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl 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parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor3NuclearFraction_CNhs12583_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14317-155D6\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_tpm_rev SmallAirwayEpithelialCellsD3- bigWig Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_reverse 1 1882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%20donor3%20%28cytoplasmic%20fraction%29.CNhs14563.14316-155D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells donor3 (cytoplasmic fraction)_CNhs14563_14316-155D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14316-155D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmallAirwayEpithelialCellsDonor3CytoplasmicFraction_CNhs14563_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14316-155D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF688UKW ENCSR137ZMQ Peak bigBed 5 K562 REST peaks 4 1883 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/0cb5ae2f-bf0e-4f0c-afa5-731bd1ed3058/ENCFF688UKW.bigBed\ labelFields none\ longLabel K562 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR137ZMQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF688UKW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF181YJP ENCSR217SET Peak bigBed 5 SW480 DNase peak 4 1883 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0114bd64-6c0a-46b3-b9d8-737cd904d203/ENCFF181YJP.bigBed\ color 6,218,147\ labelFields none\ longLabel SW480 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217SET Peak\ track wgEncodeReg4Epigenetics_ENCFF181YJP\ type bigBed 5\ visibility squish\ SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_ctss_fwd SmcAorticCytofracD0+ bigWig Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_forward 0 1883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28cytoplasmic%20fraction%29.CNhs12401.14313-155D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14313-155D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD0+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_tpm_fwd SmcAorticCytofracD0+ bigWig Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_forward 1 1883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28cytoplasmic%20fraction%29.CNhs12401.14313-155D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14313-155D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD0+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF286HLX ENCSR137ZMQ Signal bigWig K562 REST ENCSR137ZMQ signal 2 1884 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/515256f3-6406-4d47-ac30-10376739a10c/ENCFF286HLX.bigWig\ color 254,75,173\ longLabel K562 REST ENCSR137ZMQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR137ZMQ Signal\ track wgEncodeReg4TfChip_ENCFF286HLX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF123CER ENCSR217SET Signal bigWig SW480 DNase signal 2 1884 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/933c113a-588d-4220-b6dc-8ed8cf703371/ENCFF123CER.bigWig\ color 6,218,147\ longLabel SW480 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217SET Signal\ track wgEncodeReg4Epigenetics_ENCFF123CER\ type bigWig\ visibility full\ SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_ctss_fwd SmcAorticCytofracD0+ bigWig Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_forward 0 1884 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28nuclear%20fraction%29.CNhs12402.14314-155D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14314-155D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD0+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_tpm_fwd SmcAorticCytofracD0+ bigWig Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_forward 1 1884 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28nuclear%20fraction%29.CNhs12402.14314-155D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14314-155D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD0+\ subGroups sequenceTech=hCAGE category=fractionation strand=forward\ track SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF130DMJ ENCSR138FUZ Peak bigBed 5 K562 RNF2 peaks 4 1885 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/10068774-1df6-4752-bd84-72ca9eec5fdc/ENCFF130DMJ.bigBed\ labelFields none\ longLabel K562 RNF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR138FUZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF130DMJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962DYY ENCSR217TAW Peak bigBed 5 GM23248 DNase peak 4 1885 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/7c54a850-61c6-4139-a915-583327523ebc/ENCFF962DYY.bigBed\ color 6,218,147\ labelFields none\ longLabel GM23248 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217TAW Peak\ track wgEncodeReg4Epigenetics_ENCFF962DYY\ type bigBed 5\ visibility squish\ SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_ctss_rev SmcAorticCytofracD0- bigWig Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_reverse 0 1885 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28cytoplasmic%20fraction%29.CNhs12401.14313-155D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14313-155D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_tpm_rev SmcAorticCytofracD0- bigWig Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_reverse 1 1885 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28cytoplasmic%20fraction%29.CNhs12401.14313-155D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction)_CNhs12401_14313-155D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14313-155D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmoothMuscleCellsAorticDonor0CytoplasmicFraction_CNhs12401_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14313-155D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF063UTI ENCSR138FUZ Signal bigWig K562 RNF2 ENCSR138FUZ signal 2 1886 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/3ca884b6-be5d-49d3-99bd-c2ddc6665b3b/ENCFF063UTI.bigWig\ color 254,75,173\ longLabel K562 RNF2 ENCSR138FUZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR138FUZ Signal\ track wgEncodeReg4TfChip_ENCFF063UTI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF291LQB ENCSR217TAW Signal bigWig GM23248 DNase signal 2 1886 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/bc39a237-b89f-4a10-950b-54c70e8f2602/ENCFF291LQB.bigWig\ color 6,218,147\ longLabel GM23248 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217TAW Signal\ track wgEncodeReg4Epigenetics_ENCFF291LQB\ type bigWig\ visibility full\ SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_ctss_rev SmcAorticCytofracD0- bigWig Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_reverse 0 1886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28nuclear%20fraction%29.CNhs12402.14314-155D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14314-155D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_tpm_rev SmcAorticCytofracD0- bigWig Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_reverse 1 1886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28nuclear%20fraction%29.CNhs12402.14314-155D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0 (nuclear fraction)_CNhs12402_14314-155D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14314-155D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=fractionation strand=reverse\ track SmoothMuscleCellsAorticDonor0NuclearFraction_CNhs12402_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14314-155D3\ urlLabel FANTOM5 Details:\ BasophilsDonor1_CNhs12546_ctss_fwd BasophilsD1+ bigWig Basophils, donor1_CNhs12546_12241-129G9_forward 0 1887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Basophils, donor1_CNhs12546_12241-129G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor1_CNhs12546_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ BasophilsDonor1_CNhs12546_tpm_fwd BasophilsD1+ bigWig Basophils, donor1_CNhs12546_12241-129G9_forward 1 1887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor1_CNhs12546_12241-129G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor1_CNhs12546_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF015GDS ENCSR138YYY Peak bigBed 5 K562 GABPB1 peaks 4 1887 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/818843a7-976b-4379-bb67-b629e619426e/ENCFF015GDS.bigBed\ labelFields none\ longLabel K562 GABPB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR138YYY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF015GDS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF035GGV ENCSR217YRJ Peak bigBed 5 Muscle of trunk tissue female embryo 120 days DNase peak 4 1887 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/e814bf71-d9e2-44b3-be74-dadb7680a326/ENCFF035GGV.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of trunk tissue female embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217YRJ Peak\ track wgEncodeReg4Epigenetics_ENCFF035GGV\ type bigBed 5\ visibility squish\ BasophilsDonor1_CNhs12546_ctss_rev BasophilsD1- bigWig Basophils, donor1_CNhs12546_12241-129G9_reverse 0 1888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor1_CNhs12546_12241-129G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor1_CNhs12546_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ BasophilsDonor1_CNhs12546_tpm_rev BasophilsD1- bigWig Basophils, donor1_CNhs12546_12241-129G9_reverse 1 1888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor1.CNhs12546.12241-129G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor1_CNhs12546_12241-129G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12241-129G9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor1_CNhs12546_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12241-129G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF571MUD ENCSR138YYY Signal bigWig K562 GABPB1 ENCSR138YYY signal 2 1888 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/d691e8bd-9b43-4c82-ba9d-2e371143ea2c/ENCFF571MUD.bigWig\ color 254,75,173\ longLabel K562 GABPB1 ENCSR138YYY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR138YYY Signal\ track wgEncodeReg4TfChip_ENCFF571MUD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF941XTI ENCSR217YRJ Signal bigWig Muscle of trunk tissue female embryo 120 days DNase signal 2 1888 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/f746c2d2-ffa6-4ff9-8e68-3a4907448817/ENCFF941XTI.bigWig\ color 6,218,147\ longLabel Muscle of trunk tissue female embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR217YRJ Signal\ track wgEncodeReg4Epigenetics_ENCFF941XTI\ type bigWig\ visibility full\ BasophilsDonor2_CNhs12563_ctss_fwd BasophilsD2+ bigWig Basophils, donor2_CNhs12563_12242-129H1_forward 0 1889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Basophils, donor2_CNhs12563_12242-129H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor2_CNhs12563_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ BasophilsDonor2_CNhs12563_tpm_fwd BasophilsD2+ bigWig Basophils, donor2_CNhs12563_12242-129H1_forward 1 1889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor2_CNhs12563_12242-129H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track BasophilsDonor2_CNhs12563_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF783SBT ENCSR140DSL Peak bigBed 5 HeLa-S3 MAFF peaks 4 1889 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/f5d84e24-d670-4db4-9de3-c750fee6acfd/ENCFF783SBT.bigBed\ labelFields none\ longLabel HeLa-S3 MAFF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR140DSL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF783SBT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF045DXF ENCSR218FJD Peak bigBed 5 T-cell male adult 30 years DNase peak 4 1889 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/2418fc04-e524-4d6c-a982-e908d3afc29b/ENCFF045DXF.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR218FJD Peak\ track wgEncodeReg4Epigenetics_ENCFF045DXF\ type bigBed 5\ visibility squish\ BasophilsDonor2_CNhs12563_ctss_rev BasophilsD2- bigWig Basophils, donor2_CNhs12563_12242-129H1_reverse 0 1890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor2_CNhs12563_12242-129H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor2_CNhs12563_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ BasophilsDonor2_CNhs12563_tpm_rev BasophilsD2- bigWig Basophils, donor2_CNhs12563_12242-129H1_reverse 1 1890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor2.CNhs12563.12242-129H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor2_CNhs12563_12242-129H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12242-129H1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track BasophilsDonor2_CNhs12563_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12242-129H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF896JUM ENCSR140DSL Signal bigWig HeLa-S3 MAFF ENCSR140DSL signal 2 1890 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/c8890571-63f8-4a0d-adef-507fd0284b5f/ENCFF896JUM.bigWig\ color 186,111,165\ longLabel HeLa-S3 MAFF ENCSR140DSL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR140DSL Signal\ track wgEncodeReg4TfChip_ENCFF896JUM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF162UOX ENCSR218FJD Signal bigWig T-cell male adult 30 years DNase signal 2 1890 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/bc71e73f-235e-40eb-900a-88ad7f2d9c4f/ENCFF162UOX.bigWig\ color 6,218,147\ longLabel T-cell male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR218FJD Signal\ track wgEncodeReg4Epigenetics_ENCFF162UOX\ type bigWig\ visibility full\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_fwd Cd133+StemCellsAdultBoneMarrowPl1+ bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward 0 1891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_fwd Cd133+StemCellsAdultBoneMarrowPl1+ bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward 1 1891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF967DPC ENCSR141ELR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778 ZNF778 peaks 4 1891 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/c69057d9-7e32-4942-a528-a473822124e5/ENCFF967DPC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778 ZNF778 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR141ELR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF967DPC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF993TPM ENCSR218FSP Peak bigBed 5 WERI-Rb-1 DNase peak 4 1891 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/fedd7d93-855a-423c-8854-f63d9306914e/ENCFF993TPM.bigBed\ color 6,218,147\ labelFields none\ longLabel WERI-Rb-1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR218FSP Peak\ track wgEncodeReg4Epigenetics_ENCFF993TPM\ type bigBed 5\ visibility squish\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_rev Cd133+StemCellsAdultBoneMarrowPl1- bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse 0 1892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_rev Cd133+StemCellsAdultBoneMarrowPl1- bigWig CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse 1 1892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20pool1.CNhs12552.12224-129F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - adult bone marrow derived, pool1_CNhs12552_12224-129F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12224-129F1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsAdultBoneMarrowPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsAdultBoneMarrowDerivedPool1_CNhs12552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12224-129F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF969RID ENCSR141ELR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778 ZNF778 ENCSR141ELR signal 2 1892 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/8313b456-84bf-47e5-920e-824aa8d9c3a1/ENCFF969RID.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778 ZNF778 ENCSR141ELR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR141ELR Signal\ track wgEncodeReg4TfChip_ENCFF969RID\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF291DQP ENCSR218FSP Signal bigWig WERI-Rb-1 DNase signal 2 1892 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/ce58042a-f07e-4f00-9053-1a05722752fd/ENCFF291DQP.bigWig\ color 6,218,147\ longLabel WERI-Rb-1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR218FSP Signal\ track wgEncodeReg4Epigenetics_ENCFF291DQP\ type bigWig\ visibility full\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_fwd Cd133+StemCellsCordBloodPl1+ bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward 0 1893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsCordBloodPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_fwd Cd133+StemCellsCordBloodPl1+ bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward 1 1893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsCordBloodPl1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF087XLA ENCSR141PZA Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP3 SP3 peaks 4 1893 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/c2d97ae5-84cb-4721-b7f2-77b8e339f192/ENCFF087XLA.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP3 SP3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR141PZA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF087XLA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF182LWK ENCSR218MVT Peak bigBed 5 Neural crest cell CTCF peak 4 1893 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/db5f0863-7677-41d2-b2fa-69bb4ac76146/ENCFF182LWK.bigBed\ color 0,176,240\ labelFields none\ longLabel Neural crest cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR218MVT Peak\ track wgEncodeReg4Epigenetics_ENCFF182LWK\ type bigBed 5\ visibility squish\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_rev Cd133+StemCellsCordBloodPl1- bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse 0 1894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd133+StemCellsCordBloodPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_rev Cd133+StemCellsCordBloodPl1- bigWig CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse 1 1894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD133%2b%20stem%20cells%20-%20cord%20blood%20derived%2c%20pool1.CNhs12545.12223-129E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD133+ stem cells - cord blood derived, pool1_CNhs12545_12223-129E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12223-129E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd133+StemCellsCordBloodPl1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD133StemCellsCordBloodDerivedPool1_CNhs12545_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12223-129E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF511YMM ENCSR141PZA Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP3 SP3 ENCSR141PZA signal 2 1894 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/cfc60ec9-0943-4c1f-bb55-2da7227702dc/ENCFF511YMM.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP3 SP3 ENCSR141PZA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR141PZA Signal\ track wgEncodeReg4TfChip_ENCFF511YMM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF192FOK ENCSR218MVT Signal bigWig Neural crest cell CTCF signal 2 1894 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/88473503-1ab9-4225-b9a3-e97739b06bc2/ENCFF192FOK.bigWig\ color 0,176,240\ longLabel Neural crest cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR218MVT Signal\ track wgEncodeReg4Epigenetics_ENCFF192FOK\ type bigWig\ visibility full\ CD14CD16MonocytesDonor1_CNhs13229_ctss_fwd Cd14-cd16+MonocytesD1+ bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward 0 1895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_tpm_fwd Cd14-cd16+MonocytesD1+ bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward 1 1895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF175DFS ENCSR142IGM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPA CEBPA peaks 4 1895 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/768c250d-01f2-47bf-99a4-ea040eeffa5b/ENCFF175DFS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPA CEBPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR142IGM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF175DFS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF958EMA ENCSR219KTW Peak bigBed 5 Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase peak 4 1895 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/7c0bffca-4377-4471-94d3-d6c5f8c3a3b7/ENCFF958EMA.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR219KTW Peak\ track wgEncodeReg4Epigenetics_ENCFF958EMA\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor1_CNhs13229_ctss_rev Cd14-cd16+MonocytesD1- bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse 0 1896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13229_tpm_rev Cd14-cd16+MonocytesD1- bigWig CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse 1 1896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor1.CNhs13229.11790-124B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor1_CNhs13229_11790-124B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11790-124B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11790-124B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF014DLQ ENCSR142IGM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPA CEBPA ENCSR142IGM signal 2 1896 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/788dd9b1-9df4-4efc-8a0e-337059104326/ENCFF014DLQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPA CEBPA ENCSR142IGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR142IGM Signal\ track wgEncodeReg4TfChip_ENCFF014DLQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF147PAF ENCSR219KTW Signal bigWig Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase signal 2 1896 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/d2964899-6c27-479c-ba3b-9b11d8ddf127/ENCFF147PAF.bigWig\ color 6,218,147\ longLabel Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR219KTW Signal\ track wgEncodeReg4Epigenetics_ENCFF147PAF\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_fwd Cd19+BCellsPluriD090309Dn1+ bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward 0 1897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_fwd Cd19+BCellsPluriD090309Dn1+ bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward 1 1897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF208ADI ENCSR142SQX Peak bigBed 5 Uterus tissue female adult (53 years) POLR2A peaks 4 1897 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/2b4bfd2a-d3d3-4efd-9d51-e90c3d89be59/ENCFF208ADI.bigBed\ labelFields none\ longLabel Uterus tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR142SQX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF208ADI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF112GCH ENCSR219QSM Peak bigBed 5 Gastroesophageal sphincter tissue male adult 54 years H3K4me3 peak 4 1897 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/4406fa34-6474-4d22-ae98-c4544e2157ba/ENCFF112GCH.bigBed\ color 255,0,0\ longLabel Gastroesophageal sphincter tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR219QSM Peak\ track wgEncodeReg4Epigenetics_ENCFF112GCH\ type bigBed 5\ visibility squish\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_rev Cd19+BCellsPluriD090309Dn1- bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse 0 1898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_rev Cd19+BCellsPluriD090309Dn1- bigWig CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse 1 1898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12177.12189-129B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation1_CNhs12177_12189-129B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12189-129B2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation1_CNhs12177_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12189-129B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF849PFU ENCSR142SQX Signal bigWig Uterus tissue female adult (53 years) POLR2A ENCSR142SQX signal 2 1898 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/bdc05dbe-e645-47aa-ae2e-8ec06f0189ca/ENCFF849PFU.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (53 years) POLR2A ENCSR142SQX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR142SQX Signal\ track wgEncodeReg4TfChip_ENCFF849PFU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF051GOU ENCSR219QSM Signal bigWig Gastroesophageal sphincter tissue male adult 54 years H3K4me3 signal 2 1898 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/d06f3d0a-ec7a-4fba-8a0f-857352913c3e/ENCFF051GOU.bigWig\ color 255,0,0\ longLabel Gastroesophageal sphincter tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR219QSM Signal\ track wgEncodeReg4Epigenetics_ENCFF051GOU\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_fwd Cd19+BCellsPluriD090309Dn2+ bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward 0 1899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_fwd Cd19+BCellsPluriD090309Dn2+ bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward 1 1899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF462ENR ENCSR143CEO Peak bigBed 5 K562 ZC3H8 peaks 4 1899 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/50d59674-928e-4fdc-8f12-9db1e26d943b/ENCFF462ENR.bigBed\ labelFields none\ longLabel K562 ZC3H8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR143CEO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF462ENR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF342LPC ENCSR220TRW Peak bigBed 5 Middle frontal area 46 tissue female adult 89 years H3K27ac peak 4 1899 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/b89fd9d3-c021-4451-99bd-701b976b61c7/ENCFF342LPC.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 89 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR220TRW Peak\ track wgEncodeReg4Epigenetics_ENCFF342LPC\ type bigBed 5\ visibility squish\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_rev Cd19+BCellsPluriD090309Dn2- bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse 0 1900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_rev Cd19+BCellsPluriD090309Dn2- bigWig CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse 1 1900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12179.12194-129B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation2_CNhs12179_12194-129B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12194-129B7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation2_CNhs12179_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12194-129B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF555WZA ENCSR143CEO Signal bigWig K562 ZC3H8 ENCSR143CEO signal 2 1900 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/54522399-b133-4245-9805-ae8177796a70/ENCFF555WZA.bigWig\ color 254,75,173\ longLabel K562 ZC3H8 ENCSR143CEO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR143CEO Signal\ track wgEncodeReg4TfChip_ENCFF555WZA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF986LOD ENCSR220TRW Signal bigWig Middle frontal area 46 tissue female adult 89 years H3K27ac signal 2 1900 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/09bb191c-74c0-4f64-9f9d-6aa51ed15a2e/ENCFF986LOD.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 89 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR220TRW Signal\ track wgEncodeReg4Epigenetics_ENCFF986LOD\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_fwd Cd19+BCellsPluriD090309Dn3+ bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward 0 1901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_fwd Cd19+BCellsPluriD090309Dn3+ bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward 1 1901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF712MSJ ENCSR144NTH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBAK RBAK peaks 4 1901 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/0e4c2845-2d7c-4c12-b7c3-b2381ed1d7bc/ENCFF712MSJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBAK RBAK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR144NTH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF712MSJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF753DPM ENCSR221ROM Signal bigWig Middle frontal area 46 tissue female adult 90 or above years DNase signal 2 1901 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/bd22ee4d-4241-40ea-a013-cb880a21f62d/ENCFF753DPM.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR221ROM Signal\ track wgEncodeReg4Epigenetics_ENCFF753DPM\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_rev Cd19+BCellsPluriD090309Dn3- bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse 0 1902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_rev Cd19+BCellsPluriD090309Dn3- bigWig CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse 1 1902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12181.12199-129C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090309, donation3_CNhs12181_12199-129C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12199-129C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090309Donation3_CNhs12181_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12199-129C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF941CIH ENCSR144NTH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBAK RBAK ENCSR144NTH signal 2 1902 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/7c884f2e-171f-4e96-9395-a4f3c95cb1f0/ENCFF941CIH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBAK RBAK ENCSR144NTH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR144NTH Signal\ track wgEncodeReg4TfChip_ENCFF941CIH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF405EMV ENCSR222CLC Peak bigBed 5 Heart left ventricle tissue male adult 69 years DNase peak 4 1902 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/02918511-6773-4b49-a04d-cddbc44bf145/ENCFF405EMV.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart left ventricle tissue male adult 69 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR222CLC Peak\ track wgEncodeReg4Epigenetics_ENCFF405EMV\ type bigBed 5\ visibility squish\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_fwd Cd19+BCellsPluriD090325Dn1+ bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward 0 1903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_fwd Cd19+BCellsPluriD090325Dn1+ bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward 1 1903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF132LKJ ENCSR145CXH Peak bigBed 5 HepG2 TARDBP peaks 4 1903 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/14dc5407-3e6d-4330-90fd-a6b756c7255b/ENCFF132LKJ.bigBed\ labelFields none\ longLabel HepG2 TARDBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145CXH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF132LKJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF254NBU ENCSR222CLC Signal bigWig Heart left ventricle tissue male adult 69 years DNase signal 2 1903 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/508f4205-d5fa-4262-828c-1118305bc63f/ENCFF254NBU.bigWig\ color 6,218,147\ longLabel Heart left ventricle tissue male adult 69 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR222CLC Signal\ track wgEncodeReg4Epigenetics_ENCFF254NBU\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_rev Cd19+BCellsPluriD090325Dn1- bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse 0 1904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_rev Cd19+BCellsPluriD090325Dn1- bigWig CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse 1 1904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12531.12151-128F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation1_CNhs12531_12151-128F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12151-128F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation1_CNhs12531_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12151-128F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF030PTI ENCSR145CXH Signal bigWig HepG2 TARDBP ENCSR145CXH signal 2 1904 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f061703e-b565-4412-b224-7b9f1f49cffb/ENCFF030PTI.bigWig\ color 137,152,82\ longLabel HepG2 TARDBP ENCSR145CXH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145CXH Signal\ track wgEncodeReg4TfChip_ENCFF030PTI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF048LWE ENCSR222QLW Peak bigBed 5 T-cell male adult 37 years H3K27ac peak 4 1904 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d1b5e1ff-fd11-48c4-aca9-353272dd9e59/ENCFF048LWE.bigBed\ color 181,145,0\ longLabel T-cell male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR222QLW Peak\ track wgEncodeReg4Epigenetics_ENCFF048LWE\ type bigBed 5\ visibility squish\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_ctss_fwd Cd19+BCellsPluriD090325Dn2+ bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward 0 1905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_fwd Cd19+BCellsPluriD090325Dn2+ bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward 1 1905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF196PRN ENCSR145HBC Peak bigBed 5 Thyroid gland tissue female adult (51 years) CTCF peaks 4 1905 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2018/12/07/078f489c-3799-4a5b-af51-dc48fa4ba6e0/ENCFF196PRN.bigBed\ labelFields none\ longLabel Thyroid gland tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145HBC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF196PRN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF643EGV ENCSR222QLW Signal bigWig T-cell male adult 37 years H3K27ac signal 2 1905 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b0714422-6c1e-40af-94f1-8ae545c2d5e0/ENCFF643EGV.bigWig\ color 181,145,0\ longLabel T-cell male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR222QLW Signal\ track wgEncodeReg4Epigenetics_ENCFF643EGV\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_ctss_rev Cd19+BCellsPluriD090325Dn2- bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse 0 1906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_rev Cd19+BCellsPluriD090325Dn2- bigWig CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse 1 1906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12175.12174-128I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090325, donation2_CNhs12175_12174-128I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12174-128I5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090325Donation2_CNhs12175_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12174-128I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF841RLM ENCSR145HBC Signal bigWig Thyroid gland tissue female adult (51 years) CTCF ENCSR145HBC signal 2 1906 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/0b1b5029-0451-4c59-b84c-88b1212574ea/ENCFF841RLM.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (51 years) CTCF ENCSR145HBC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145HBC Signal\ track wgEncodeReg4TfChip_ENCFF841RLM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF222SUZ ENCSR223APP Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 1906 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/51c7266d-87f6-4374-b891-16b3eca15906/ENCFF222SUZ.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223APP Peak\ track wgEncodeReg4Epigenetics_ENCFF222SUZ\ type bigBed 5\ visibility squish\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_fwd Cd19+BCellsPluriD090612Dn1+ bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward 0 1907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_tpm_fwd Cd19+BCellsPluriD090612Dn1+ bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward 1 1907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF433IUE ENCSR145QNL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 peaks 4 1907 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/b2ff0c9a-d2e0-4cc4-a8ca-362bd8eaa28f/ENCFF433IUE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145QNL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF433IUE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF158WCY ENCSR223APP Signal bigWig CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 1907 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7a7ceb6a-7186-49e7-b886-58b88d16df91/ENCFF158WCY.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223APP Signal\ track wgEncodeReg4Epigenetics_ENCFF158WCY\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_rev Cd19+BCellsPluriD090612Dn1- bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse 0 1908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation1_CNhs12183_tpm_rev Cd19+BCellsPluriD090612Dn1- bigWig CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse 1 1908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12183.12204-129C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation1_CNhs12183_12204-129C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12204-129C8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation1_CNhs12183_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12204-129C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF835QNV ENCSR145QNL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 ENCSR145QNL signal 2 1908 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/4afad3a6-df80-48d7-a286-6f03cf4f1cca/ENCFF835QNV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 ENCSR145QNL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145QNL Signal\ track wgEncodeReg4TfChip_ENCFF835QNV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF051AVT ENCSR223KKX Peak bigBed 5 Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase peak 4 1908 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/5c3c9efe-15a7-4e0d-8d49-c88e2956b53e/ENCFF051AVT.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223KKX Peak\ track wgEncodeReg4Epigenetics_ENCFF051AVT\ type bigBed 5\ visibility squish\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_fwd Cd19+BCellsPluriD090612Dn2+ bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward 0 1909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_fwd Cd19+BCellsPluriD090612Dn2+ bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward 1 1909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF674KTF ENCSR145TSJ Peak bigBed 5 K562 ATF4 peaks 4 1909 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/c70a29d5-295a-4fc7-a847-036a5b01b6a3/ENCFF674KTF.bigBed\ labelFields none\ longLabel K562 ATF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145TSJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF674KTF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF724QAK ENCSR223KKX Signal bigWig Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase signal 2 1909 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/e7a861b1-66e1-4e29-9cb8-d408abaa99fd/ENCFF724QAK.bigWig\ color 6,218,147\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223KKX Signal\ track wgEncodeReg4Epigenetics_ENCFF724QAK\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_rev Cd19+BCellsPluriD090612Dn2- bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse 0 1910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_rev Cd19+BCellsPluriD090612Dn2- bigWig CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse 1 1910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12185.12209-129D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation2_CNhs12185_12209-129D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12209-129D4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation2_CNhs12185_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12209-129D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF891VJC ENCSR145TSJ Signal bigWig K562 ATF4 ENCSR145TSJ signal 2 1910 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/7cbb81ad-8fa8-4993-84a6-fb23eadf0bdf/ENCFF891VJC.bigWig\ color 254,75,173\ longLabel K562 ATF4 ENCSR145TSJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145TSJ Signal\ track wgEncodeReg4TfChip_ENCFF891VJC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF585LYP ENCSR223UPC Peak bigBed 5 HUES48 H3K27ac peak 4 1910 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/abe2380a-6cb9-4d75-be7d-ce8eba8be344/ENCFF585LYP.bigBed\ color 181,145,0\ longLabel HUES48 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223UPC Peak\ track wgEncodeReg4Epigenetics_ENCFF585LYP\ type bigBed 5\ visibility squish\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_fwd Cd19+BCellsPluriD090612Dn3+ bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward 0 1911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_fwd Cd19+BCellsPluriD090612Dn3+ bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward 1 1911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF653WYI ENCSR145XQO Peak bigBed 5 GM12878 HDGF peaks 4 1911 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/5dddf839-555a-4bb4-a002-504ac172d01d/ENCFF653WYI.bigBed\ labelFields none\ longLabel GM12878 HDGF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145XQO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF653WYI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF923EZY ENCSR223UPC Signal bigWig HUES48 H3K27ac signal 2 1911 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6fea8d49-a6e0-48b7-a7f9-79f7b9c8102c/ENCFF923EZY.bigWig\ color 181,145,0\ longLabel HUES48 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223UPC Signal\ track wgEncodeReg4Epigenetics_ENCFF923EZY\ type bigWig\ visibility full\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_rev Cd19+BCellsPluriD090612Dn3- bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse 0 1912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_rev Cd19+BCellsPluriD090612Dn3- bigWig CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse 1 1912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12188.12214-129D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells (pluriselect), donor090612, donation3_CNhs12188_12214-129D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12214-129D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD19BCellsPluriselectDonor090612Donation3_CNhs12188_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12214-129D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF378BJI ENCSR145XQO Signal bigWig GM12878 HDGF ENCSR145XQO signal 2 1912 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/93e979b7-927a-408c-a94b-8a990ccebc64/ENCFF378BJI.bigWig\ color 254,75,173\ longLabel GM12878 HDGF ENCSR145XQO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR145XQO Signal\ track wgEncodeReg4TfChip_ENCFF378BJI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF570RHT ENCSR223XND Peak bigBed 5 T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 DNase peak 4 1912 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/3e720958-8c97-477b-bf73-a9903ea78244/ENCFF570RHT.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223XND Peak\ track wgEncodeReg4Epigenetics_ENCFF570RHT\ type bigBed 5\ visibility squish\ CD34ProgenitorsDonor1_CNhs13227_ctss_fwd Cd34+ProgenitorsD1+ bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward 0 1913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor1_CNhs13227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_tpm_fwd Cd34+ProgenitorsD1+ bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward 1 1913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor1_CNhs13227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF125ESZ ENCSR146BGM Peak bigBed 5 Gastroesophageal sphincter tissue female adult (51 years) CTCF peaks 4 1913 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/65d843dc-8d0b-44f1-9110-3f7816b7de33/ENCFF125ESZ.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR146BGM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF125ESZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF502EWY ENCSR223XND Signal bigWig T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 DNase signal 2 1913 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/74b937ec-eea7-4825-9b88-a4f46aaed0aa/ENCFF502EWY.bigWig\ color 6,218,147\ longLabel T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR223XND Signal\ track wgEncodeReg4Epigenetics_ENCFF502EWY\ type bigWig\ visibility full\ CD34ProgenitorsDonor1_CNhs13227_ctss_rev Cd34+ProgenitorsD1- bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse 0 1914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor1_CNhs13227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor1_CNhs13227_tpm_rev Cd34+ProgenitorsD1- bigWig CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse 1 1914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor1.CNhs13227.11545-120B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor1_CNhs13227_11545-120B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11545-120B6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor1_CNhs13227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11545-120B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF561IIV ENCSR146BGM Signal bigWig Gastroesophageal sphincter tissue female adult (51 years) CTCF ENCSR146BGM signal 2 1914 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/376bc8bd-8894-4b37-bc00-f7eb39f20c31/ENCFF561IIV.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (51 years) CTCF ENCSR146BGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR146BGM Signal\ track wgEncodeReg4TfChip_ENCFF561IIV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF374LAA ENCSR224FOA Peak bigBed 5 Islet precursor cell DNase peak 4 1914 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/85f09ef7-1919-4e07-90e5-8bb9252d861a/ENCFF374LAA.bigBed\ color 6,218,147\ labelFields none\ longLabel Islet precursor cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224FOA Peak\ track wgEncodeReg4Epigenetics_ENCFF374LAA\ type bigBed 5\ visibility squish\ CD34ProgenitorsDonor2_CNhs12205_ctss_fwd Cd34+ProgenitorsD2+ bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward 0 1915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor2_CNhs12205_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_tpm_fwd Cd34+ProgenitorsD2+ bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward 1 1915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34ProgenitorsDonor2_CNhs12205_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF457XPY ENCSR146NLL Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REPIN1 REPIN1 peaks 4 1915 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/aaf538c7-4c16-4528-a7ab-4647960b6617/ENCFF457XPY.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REPIN1 REPIN1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR146NLL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF457XPY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF080RXM ENCSR224FOA Signal bigWig Islet precursor cell DNase signal 2 1915 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0d139ec2-b045-403e-a74b-4caa59ca15b2/ENCFF080RXM.bigWig\ color 6,218,147\ longLabel Islet precursor cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224FOA Signal\ track wgEncodeReg4Epigenetics_ENCFF080RXM\ type bigWig\ visibility full\ CD34ProgenitorsDonor2_CNhs12205_ctss_rev Cd34+ProgenitorsD2- bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse 0 1916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+ProgenitorsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor2_CNhs12205_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ CD34ProgenitorsDonor2_CNhs12205_tpm_rev Cd34+ProgenitorsD2- bigWig CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse 1 1916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20Progenitors%2c%20donor2.CNhs12205.11625-122B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ Progenitors, donor2_CNhs12205_11625-122B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11625-122B5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+ProgenitorsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34ProgenitorsDonor2_CNhs12205_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11625-122B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF283BBC ENCSR146NLL Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REPIN1 REPIN1 ENCSR146NLL signal 2 1916 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/b820d0fe-f8e2-446b-bee5-39ef9cfbb9e6/ENCFF283BBC.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REPIN1 REPIN1 ENCSR146NLL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR146NLL Signal\ track wgEncodeReg4TfChip_ENCFF283BBC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF432KFY ENCSR224IYD Peak bigBed 5 Medulla oblongata tissue male adult 78 years and male adult 84 years DNase peak 4 1916 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/55d62cbf-6c60-4d09-ba9d-1c0a3d728e1b/ENCFF432KFY.bigBed\ color 6,218,147\ labelFields none\ longLabel Medulla oblongata tissue male adult 78 years and male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224IYD Peak\ track wgEncodeReg4Epigenetics_ENCFF432KFY\ type bigBed 5\ visibility squish\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_fwd Cd34+StemCellsAdultBoneMarrowD1Tr2+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward 0 1917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_fwd Cd34+StemCellsAdultBoneMarrowD1Tr2+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward 1 1917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF708IOX ENCSR147PYL Peak bigBed 5 Esophagus squamous epithelium tissue female adult (53 years) POLR2A peaks 4 1917 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/88653c12-7cb5-415a-9e50-9815e3fb2f6c/ENCFF708IOX.bigBed\ labelFields none\ longLabel Esophagus squamous epithelium tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR147PYL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF708IOX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF804IBP ENCSR224IYD Signal bigWig Medulla oblongata tissue male adult 78 years and male adult 84 years DNase signal 2 1917 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/25f9fd35-f6dc-4e85-8304-83e71c8dcbcf/ENCFF804IBP.bigWig\ color 6,218,147\ longLabel Medulla oblongata tissue male adult 78 years and male adult 84 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224IYD Signal\ track wgEncodeReg4Epigenetics_ENCFF804IBP\ type bigWig\ visibility full\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_rev Cd34+StemCellsAdultBoneMarrowD1Tr2- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse 0 1918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_rev Cd34+StemCellsAdultBoneMarrowD1Tr2- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse 1 1918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep2.CNhs12553.12225-129F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep2_CNhs12553_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep2_CNhs12553_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF045SLO ENCSR147PYL Signal bigWig Esophagus squamous epithelium tissue female adult (53 years) POLR2A ENCSR147PYL signal 2 1918 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/1ab071cb-ba3d-49ab-9809-a7be9dfb68a6/ENCFF045SLO.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (53 years) POLR2A ENCSR147PYL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR147PYL Signal\ track wgEncodeReg4TfChip_ENCFF045SLO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF284HNQ ENCSR224STY Peak bigBed 5 Breast epithelium tissue male adult 37 years H3K4me3 peak 4 1918 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/55ef11f2-9bc3-4f85-965b-93085e84600b/ENCFF284HNQ.bigBed\ color 255,0,0\ longLabel Breast epithelium tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224STY Peak\ track wgEncodeReg4Epigenetics_ENCFF284HNQ\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_fwd Cd4+cd25+cd45ra+D1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward 0 1919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_fwd Cd4+cd25+cd45ra+D1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward 1 1919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF771INO ENCSR149ZBI Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584 ZNF584 peaks 4 1919 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/05fde058-942f-4500-968e-adddd9cb0912/ENCFF771INO.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584 ZNF584 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR149ZBI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF771INO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF720WSA ENCSR224STY Signal bigWig Breast epithelium tissue male adult 37 years H3K4me3 signal 2 1919 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/4b93c5e0-7dd2-4914-8325-e39d64e2635e/ENCFF720WSA.bigWig\ color 255,0,0\ longLabel Breast epithelium tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224STY Signal\ track wgEncodeReg4Epigenetics_ENCFF720WSA\ type bigWig\ visibility full\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_rev Cd4+cd25+cd45ra+D1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse 0 1920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_rev Cd4+cd25+cd45ra+D1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse 1 1920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor1.CNhs13238.11780-124A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor1_CNhs13238_11780-124A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11780-124A7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor1_CNhs13238_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11780-124A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF059LOW ENCSR149ZBI Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584 ZNF584 ENCSR149ZBI signal 2 1920 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/2fa6bb11-bb4d-44d1-8929-c1420ce3d020/ENCFF059LOW.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584 ZNF584 ENCSR149ZBI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR149ZBI Signal\ track wgEncodeReg4TfChip_ENCFF059LOW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF170ORD ENCSR224WWI Peak bigBed 5 Upper lobe of left lung tissue female adult 53 years CTCF peak 4 1920 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/36b1aac9-44fc-4248-bd0f-3c32823c0ff9/ENCFF170ORD.bigBed\ color 0,176,240\ labelFields none\ longLabel Upper lobe of left lung tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224WWI Peak\ track wgEncodeReg4Epigenetics_ENCFF170ORD\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_fwd Cd4+cd25+cd45ra+D2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward 0 1921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_fwd Cd4+cd25+cd45ra+D2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward 1 1921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF079FKB ENCSR150EFU Peak bigBed 5 A549 SMC3 peaks 4 1921 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/c462e81e-10ea-462f-8d5f-3b9a187b4a14/ENCFF079FKB.bigBed\ labelFields none\ longLabel A549 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR150EFU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF079FKB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF543MYI ENCSR224WWI Signal bigWig Upper lobe of left lung tissue female adult 53 years CTCF signal 2 1921 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/5bb13bdc-5e9b-4009-91ba-6a89f382788a/ENCFF543MYI.bigWig\ color 0,176,240\ longLabel Upper lobe of left lung tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR224WWI Signal\ track wgEncodeReg4Epigenetics_ENCFF543MYI\ type bigWig\ visibility full\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_rev Cd4+cd25+cd45ra+D2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse 0 1922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_rev Cd4+cd25+cd45ra+D2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse 1 1922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor2.CNhs13235.11796-124C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor2_CNhs13235_11796-124C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11796-124C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor2_CNhs13235_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11796-124C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF820QVO ENCSR150EFU Signal bigWig A549 SMC3 ENCSR150EFU signal 2 1922 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/01/8bead3fd-ae53-4225-af14-5515bafa09c7/ENCFF820QVO.bigWig\ color 130,163,45\ longLabel A549 SMC3 ENCSR150EFU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR150EFU Signal\ track wgEncodeReg4TfChip_ENCFF820QVO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF163BBN ENCSR225KOS Peak bigBed 5 Brain organoid female embryo 5 days, 180 days post differentiation CTCF peak 4 1922 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/140fe540-df33-490a-b7f9-9322320fe58b/ENCFF163BBN.bigBed\ color 0,176,240\ labelFields none\ longLabel Brain organoid female embryo 5 days, 180 days post differentiation CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR225KOS Peak\ track wgEncodeReg4Epigenetics_ENCFF163BBN\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_fwd Cd4+cd25-cd45ra-D1+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward 0 1923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_fwd Cd4+cd25-cd45ra-D1+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward 1 1923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF252VFI ENCSR151NQL Peak bigBed 5 HepG2 AGO2 peaks 4 1923 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/aa3dc02c-cfa2-4d55-ab82-9a47d3f81699/ENCFF252VFI.bigBed\ labelFields none\ longLabel HepG2 AGO2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR151NQL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF252VFI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF192VBR ENCSR225KOS Signal bigWig Brain organoid female embryo 5 days, 180 days post differentiation CTCF signal 2 1923 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/14d66944-7c15-4ae1-850e-80cf8086b141/ENCFF192VBR.bigWig\ color 0,176,240\ longLabel Brain organoid female embryo 5 days, 180 days post differentiation CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR225KOS Signal\ track wgEncodeReg4Epigenetics_ENCFF192VBR\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_rev Cd4+cd25-cd45ra-D1- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse 0 1924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_rev Cd4+cd25-cd45ra-D1- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse 1 1924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor1.CNhs13239.11786-124B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor1_CNhs13239_11786-124B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11786-124B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor1_CNhs13239_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11786-124B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF097LEQ ENCSR151NQL Signal bigWig HepG2 AGO2 ENCSR151NQL signal 2 1924 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f16b7003-67cc-4c52-89e7-a92661c0ec8f/ENCFF097LEQ.bigWig\ color 137,152,82\ longLabel HepG2 AGO2 ENCSR151NQL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR151NQL Signal\ track wgEncodeReg4TfChip_ENCFF097LEQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF461YDT ENCSR225OKX Peak bigBed 5 Omental fat pad tissue female adult 51 years CTCF peak 4 1924 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4a401900-df2f-4348-b8e3-af6c698ef73e/ENCFF461YDT.bigBed\ color 0,176,240\ labelFields none\ longLabel Omental fat pad tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR225OKX Peak\ track wgEncodeReg4Epigenetics_ENCFF461YDT\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_fwd Cd4+cd25-cd45ra-D2+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward 0 1925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_fwd Cd4+cd25-cd45ra-D2+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward 1 1925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF674HJF ENCSR153HNT Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 peaks 4 1925 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/b476cc13-f57c-455a-a244-a9715c1f6059/ENCFF674HJF.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR153HNT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF674HJF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF501ILD ENCSR225OKX Signal bigWig Omental fat pad tissue female adult 51 years CTCF signal 2 1925 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/3dec0d3e-c7cc-4a9c-a637-99471b3be8da/ENCFF501ILD.bigWig\ color 0,176,240\ longLabel Omental fat pad tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR225OKX Signal\ track wgEncodeReg4Epigenetics_ENCFF501ILD\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_rev Cd4+cd25-cd45ra-D2- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse 0 1926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_rev Cd4+cd25-cd45ra-D2- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse 1 1926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor2.CNhs13237.11798-124C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor2_CNhs13237_11798-124C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11798-124C7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor2_CNhs13237_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11798-124C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF032KSP ENCSR153HNT Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 ENCSR153HNT signal 2 1926 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/ca21b175-4773-4ac6-863f-b5c4dc58ca6d/ENCFF032KSP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 ENCSR153HNT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR153HNT Signal\ track wgEncodeReg4TfChip_ENCFF032KSP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF942ANS ENCSR226JLK Peak bigBed 5 Inflammatory macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase peak 4 1926 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/4015aeef-811d-410a-8844-79f17e9befd4/ENCFF942ANS.bigBed\ color 6,218,147\ labelFields none\ longLabel Inflammatory macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR226JLK Peak\ track wgEncodeReg4Epigenetics_ENCFF942ANS\ type bigBed 5\ visibility squish\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_fwd Cd8+TCellsPluriD090309Dn1+ bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward 0 1927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_fwd Cd8+TCellsPluriD090309Dn1+ bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward 1 1927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF983HAU ENCSR154GUK Peak bigBed 5 Tibial nerve tissue female adult (51 years) POLR2A peaks 4 1927 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/483f3c8f-d166-4609-9f28-cf8b9170b92a/ENCFF983HAU.bigBed\ labelFields none\ longLabel Tibial nerve tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR154GUK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF983HAU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF866KDT ENCSR226JLK Signal bigWig Inflammatory macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase signal 2 1927 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/d49da255-d707-4b63-8f3e-ab3901fb29ab/ENCFF866KDT.bigWig\ color 6,218,147\ longLabel Inflammatory macrophage male adult 21 years treated with lipopolysaccharide for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR226JLK Signal\ track wgEncodeReg4Epigenetics_ENCFF866KDT\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_rev Cd8+TCellsPluriD090309Dn1- bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse 0 1928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_rev Cd8+TCellsPluriD090309Dn1- bigWig CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse 1 1928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation1.CNhs12176.12186-129A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation1_CNhs12176_12186-129A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12186-129A8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation1_CNhs12176_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12186-129A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF238AXS ENCSR154GUK Signal bigWig Tibial nerve tissue female adult (51 years) POLR2A ENCSR154GUK signal 2 1928 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/6383ba6b-dc8e-47f4-89e1-9ea92f6f29d4/ENCFF238AXS.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (51 years) POLR2A ENCSR154GUK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR154GUK Signal\ track wgEncodeReg4TfChip_ENCFF238AXS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF527AIX ENCSR226LVB Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase peak 4 1928 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/e226b0af-a303-4e72-b353-91ea006e27a8/ENCFF527AIX.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR226LVB Peak\ track wgEncodeReg4Epigenetics_ENCFF527AIX\ type bigBed 5\ visibility squish\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_fwd Cd8+TCellsPluriD090309Dn2+ bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward 0 1929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_fwd Cd8+TCellsPluriD090309Dn2+ bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward 1 1929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF210VCS ENCSR154YWK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558 ZNF558 peaks 4 1929 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/7c54ecd5-26e1-4438-929e-c742728a90dc/ENCFF210VCS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558 ZNF558 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR154YWK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF210VCS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF950JCQ ENCSR226LVB Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase signal 2 1929 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c29e957c-64eb-46d7-b27a-6fcc29f0537c/ENCFF950JCQ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR226LVB Signal\ track wgEncodeReg4Epigenetics_ENCFF950JCQ\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_rev Cd8+TCellsPluriD090309Dn2- bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse 0 1930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_rev Cd8+TCellsPluriD090309Dn2- bigWig CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse 1 1930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation2.CNhs12178.12191-129B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation2_CNhs12178_12191-129B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12191-129B4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation2_CNhs12178_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12191-129B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF749NGH ENCSR154YWK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558 ZNF558 ENCSR154YWK signal 2 1930 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/63477fa5-c085-45d2-81ed-b545d53cb329/ENCFF749NGH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558 ZNF558 ENCSR154YWK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR154YWK Signal\ track wgEncodeReg4TfChip_ENCFF749NGH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF813JTC ENCSR227FVE Peak bigBed 5 Ovary tissue female adult 59 years ATAC peak 4 1930 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/0bd24c02-4832-47c5-bc2c-bf9dd374264b/ENCFF813JTC.bigBed\ color 2,199,185\ longLabel Ovary tissue female adult 59 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR227FVE Peak\ track wgEncodeReg4Epigenetics_ENCFF813JTC\ type bigBed 5\ visibility squish\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_fwd Cd8+TCellsPluriD090309Dn3+ bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward 0 1931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_fwd Cd8+TCellsPluriD090309Dn3+ bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward 1 1931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF291CXK ENCSR155KHM Peak bigBed 5 K562 ARNT peaks 4 1931 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/76fdb6f1-c2f3-42c6-8e1a-d08f5614b41d/ENCFF291CXK.bigBed\ labelFields none\ longLabel K562 ARNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR155KHM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF291CXK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF912UZC ENCSR227FVE Signal bigWig Ovary tissue female adult 59 years ATAC signal 2 1931 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/4bc24aa0-1d3a-476b-93b0-25ddf9fcbf9b/ENCFF912UZC.bigWig\ color 2,199,185\ longLabel Ovary tissue female adult 59 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR227FVE Signal\ track wgEncodeReg4Epigenetics_ENCFF912UZC\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_rev Cd8+TCellsPluriD090309Dn3- bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse 0 1932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_rev Cd8+TCellsPluriD090309Dn3- bigWig CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse 1 1932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090309%2c%20donation3.CNhs12180.12196-129B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090309, donation3_CNhs12180_12196-129B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12196-129B9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090309Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090309Donation3_CNhs12180_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12196-129B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF466GVY ENCSR155KHM Signal bigWig K562 ARNT ENCSR155KHM signal 2 1932 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/0c4abb9b-4f27-4070-bc40-fef6f3f7a154/ENCFF466GVY.bigWig\ color 254,75,173\ longLabel K562 ARNT ENCSR155KHM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR155KHM Signal\ track wgEncodeReg4TfChip_ENCFF466GVY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF081IJF ENCSR227FYJ Peak bigBed 5 Foreskin melanocyte male newborn H3K27ac peak 4 1932 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/aac36a91-fe0e-406f-8675-ec86bf68083f/ENCFF081IJF.bigBed\ color 181,145,0\ longLabel Foreskin melanocyte male newborn H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR227FYJ Peak\ track wgEncodeReg4Epigenetics_ENCFF081IJF\ type bigBed 5\ visibility squish\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_fwd Cd8+TCellsPluriD090325Dn1+ bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward 0 1933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_fwd Cd8+TCellsPluriD090325Dn1+ bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward 1 1933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF930FLM ENCSR155VDK Peak bigBed 5 MCF-7 ZBTB11 peaks 4 1933 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/4165b314-d66e-4fed-9d8d-77fe6e8644a4/ENCFF930FLM.bigBed\ labelFields none\ longLabel MCF-7 ZBTB11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR155VDK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF930FLM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF337BET ENCSR227FYJ Signal bigWig Foreskin melanocyte male newborn H3K27ac signal 2 1933 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/fee7de45-3e26-4b8e-acd6-62d89116eb74/ENCFF337BET.bigWig\ color 181,145,0\ longLabel Foreskin melanocyte male newborn H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR227FYJ Signal\ track wgEncodeReg4Epigenetics_ENCFF337BET\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_rev Cd8+TCellsPluriD090325Dn1- bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse 0 1934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_rev Cd8+TCellsPluriD090325Dn1- bigWig CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse 1 1934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation1.CNhs12201.12148-128F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation1_CNhs12201_12148-128F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12148-128F6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation1_CNhs12201_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12148-128F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF731QHL ENCSR155VDK Signal bigWig MCF-7 ZBTB11 ENCSR155VDK signal 2 1934 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/c5612bc0-9908-460a-bb94-d4b43b6f8eab/ENCFF731QHL.bigWig\ color 65,171,173\ longLabel MCF-7 ZBTB11 ENCSR155VDK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR155VDK Signal\ track wgEncodeReg4TfChip_ENCFF731QHL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477HIS ENCSR228BOM Peak bigBed 5 Right lung tissue male embryo 115 days DNase peak 4 1934 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/0797d5ff-2ec8-4196-9137-63a3072fd68f/ENCFF477HIS.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lung tissue male embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR228BOM Peak\ track wgEncodeReg4Epigenetics_ENCFF477HIS\ type bigBed 5\ visibility squish\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_fwd Cd8+TCellsPluriD090325Dn2+ bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward 0 1935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_fwd Cd8+TCellsPluriD090325Dn2+ bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward 1 1935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF046OVF ENCSR156APP Peak bigBed 5 HepG2 PTBP1 peaks 4 1935 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/797aa747-ebd4-49dd-b32e-a70ac9c58449/ENCFF046OVF.bigBed\ labelFields none\ longLabel HepG2 PTBP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR156APP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF046OVF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF330KCN ENCSR228BOM Signal bigWig Right lung tissue male embryo 115 days DNase signal 2 1935 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/dd4f0aab-118c-499e-920a-93bac620f0bd/ENCFF330KCN.bigWig\ color 6,218,147\ longLabel Right lung tissue male embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR228BOM Signal\ track wgEncodeReg4Epigenetics_ENCFF330KCN\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_rev Cd8+TCellsPluriD090325Dn2- bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse 0 1936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_rev Cd8+TCellsPluriD090325Dn2- bigWig CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse 1 1936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090325%2c%20donation2.CNhs12199.12171-128I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090325, donation2_CNhs12199_12171-128I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12171-128I2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090325Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090325Donation2_CNhs12199_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12171-128I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF423VMC ENCSR156APP Signal bigWig HepG2 PTBP1 ENCSR156APP signal 2 1936 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/79712d7d-9c84-4721-9275-99248710499e/ENCFF423VMC.bigWig\ color 137,152,82\ longLabel HepG2 PTBP1 ENCSR156APP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR156APP Signal\ track wgEncodeReg4TfChip_ENCFF423VMC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF994QJQ ENCSR228VNQ Peak bigBed 5 Mammary epithelial cell female adult 18 years DNase peak 4 1936 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/e02eef4f-2315-4ed0-8c07-8035068a84d2/ENCFF994QJQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Mammary epithelial cell female adult 18 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR228VNQ Peak\ track wgEncodeReg4Epigenetics_ENCFF994QJQ\ type bigBed 5\ visibility squish\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_fwd Cd8+TCellsPluriD090612Dn1+ bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward 0 1937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_fwd Cd8+TCellsPluriD090612Dn1+ bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward 1 1937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF341GEA ENCSR156CWW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT3B DNMT3B peaks 4 1937 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a4d26fdf-6b21-44fe-819f-539507ee9e1c/ENCFF341GEA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT3B DNMT3B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR156CWW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF341GEA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF251BVR ENCSR228VNQ Signal bigWig Mammary epithelial cell female adult 18 years DNase signal 2 1937 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/26f49298-e0b5-4ee7-9a3f-849934324dbb/ENCFF251BVR.bigWig\ color 6,218,147\ longLabel Mammary epithelial cell female adult 18 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR228VNQ Signal\ track wgEncodeReg4Epigenetics_ENCFF251BVR\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_rev Cd8+TCellsPluriD090612Dn1- bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse 0 1938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_rev Cd8+TCellsPluriD090612Dn1- bigWig CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse 1 1938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation1.CNhs12182.12201-129C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation1_CNhs12182_12201-129C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12201-129C5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation1_CNhs12182_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12201-129C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF296LMJ ENCSR156CWW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT3B DNMT3B ENCSR156CWW signal 2 1938 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d91ed33e-3228-4417-93f6-8584a402e9c0/ENCFF296LMJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT3B DNMT3B ENCSR156CWW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR156CWW Signal\ track wgEncodeReg4TfChip_ENCFF296LMJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF138QCD ENCSR229BGG Peak bigBed 5 Memory B cell male adult 40 years DNase peak 4 1938 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/2cd37af6-717d-4d83-a2d5-8a5ed8ad1fe7/ENCFF138QCD.bigBed\ color 6,218,147\ labelFields none\ longLabel Memory B cell male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR229BGG Peak\ track wgEncodeReg4Epigenetics_ENCFF138QCD\ type bigBed 5\ visibility squish\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_fwd Cd8+TCellsPluriD090612Dn2+ bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward 0 1939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_fwd Cd8+TCellsPluriD090612Dn2+ bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward 1 1939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF297FPP ENCSR156UQO Peak bigBed 5 Esophagus squamous epithelium tissue male adult (37 years) POLR2A peaks 4 1939 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/2d5a964e-d03f-4fec-9ef8-d0f8b34d7de5/ENCFF297FPP.bigBed\ labelFields none\ longLabel Esophagus squamous epithelium tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR156UQO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF297FPP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF500QFS ENCSR229BGG Signal bigWig Memory B cell male adult 40 years DNase signal 2 1939 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/094a2e74-4cbe-49c9-8594-c865d34b7bfe/ENCFF500QFS.bigWig\ color 6,218,147\ longLabel Memory B cell male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR229BGG Signal\ track wgEncodeReg4Epigenetics_ENCFF500QFS\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_rev Cd8+TCellsPluriD090612Dn2- bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse 0 1940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_rev Cd8+TCellsPluriD090612Dn2- bigWig CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse 1 1940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation2.CNhs12184.12206-129D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation2_CNhs12184_12206-129D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12206-129D1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation2_CNhs12184_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12206-129D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF476VVV ENCSR156UQO Signal bigWig Esophagus squamous epithelium tissue male adult (37 years) POLR2A ENCSR156UQO signal 2 1940 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/cbfbdf4b-81f3-4e6d-9960-04befca829b8/ENCFF476VVV.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue male adult (37 years) POLR2A ENCSR156UQO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR156UQO Signal\ track wgEncodeReg4TfChip_ENCFF476VVV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF499ZEJ ENCSR230BWN Signal bigWig Kidney tissue male adult 67 years H3K27ac signal 2 1940 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/185eab53-f10f-4a42-acbb-a796dfa1388a/ENCFF499ZEJ.bigWig\ color 181,145,0\ longLabel Kidney tissue male adult 67 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR230BWN Signal\ track wgEncodeReg4Epigenetics_ENCFF499ZEJ\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_fwd Cd8+TCellsPluriD090612Dn3+ bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward 0 1941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_fwd Cd8+TCellsPluriD090612Dn3+ bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward 1 1941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF578KDY ENCSR157CAU Peak bigBed 5 HepG2 ZKSCAN1 peaks 4 1941 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/b6507271-ec83-4055-9285-b2312e8a513b/ENCFF578KDY.bigBed\ labelFields none\ longLabel HepG2 ZKSCAN1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR157CAU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF578KDY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF275OLK ENCSR230IMS Signal bigWig Liver tissue male adult 31 years H3K27ac signal 2 1941 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/10b476a0-35fe-49db-83d7-2dbd77f2399a/ENCFF275OLK.bigWig\ color 181,145,0\ longLabel Liver tissue male adult 31 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR230IMS Signal\ track wgEncodeReg4Epigenetics_ENCFF275OLK\ type bigWig\ visibility full\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_rev Cd8+TCellsPluriD090612Dn3- bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse 0 1942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_rev Cd8+TCellsPluriD090612Dn3- bigWig CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse 1 1942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%20%28pluriselect%29%2c%20donor090612%2c%20donation3.CNhs12187.12211-129D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells (pluriselect), donor090612, donation3_CNhs12187_12211-129D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12211-129D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsPluriD090612Dn3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CD8TCellsPluriselectDonor090612Donation3_CNhs12187_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12211-129D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF653IOV ENCSR157CAU Signal bigWig HepG2 ZKSCAN1 ENCSR157CAU signal 2 1942 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/b3c6953e-5aad-4f2b-8308-4fbd16a5a51f/ENCFF653IOV.bigWig\ color 137,152,82\ longLabel HepG2 ZKSCAN1 ENCSR157CAU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR157CAU Signal\ track wgEncodeReg4TfChip_ENCFF653IOV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF230SFD ENCSR230RQK Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 1942 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/96d51e69-ccb0-4101-9c31-626198f97ec3/ENCFF230SFD.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR230RQK Peak\ track wgEncodeReg4Epigenetics_ENCFF230SFD\ type bigBed 5\ visibility squish\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_fwd CommonMyeloidProgenitorCmpD1+ bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward 0 1943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_fwd CommonMyeloidProgenitorCmpD1+ bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward 1 1943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF931LZG ENCSR157CEN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF205 ZNF205 peaks 4 1943 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/c22cb773-f56c-4680-9a73-0c35acdeb0f0/ENCFF931LZG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF205 ZNF205 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR157CEN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF931LZG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF800TZW ENCSR230RQK Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 1943 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/c963ece2-3f70-4807-b5c6-432d3bb43f8a/ENCFF800TZW.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR230RQK Signal\ track wgEncodeReg4Epigenetics_ENCFF800TZW\ type bigWig\ visibility full\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_rev CommonMyeloidProgenitorCmpD1- bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse 0 1944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_rev CommonMyeloidProgenitorCmpD1- bigWig common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse 1 1944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor1.CNhs12518.12130-128D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor1_CNhs12518_12130-128D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12130-128D6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor1_CNhs12518_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12130-128D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF971HGW ENCSR157CEN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF205 ZNF205 ENCSR157CEN signal 2 1944 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8ab20618-5f00-4b32-a462-7112b272cf20/ENCFF971HGW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF205 ZNF205 ENCSR157CEN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR157CEN Signal\ track wgEncodeReg4TfChip_ENCFF971HGW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF443ZDG ENCSR231BZU Peak bigBed 5 GM19351 ATAC peak 4 1944 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/27/c2faf21f-3466-4762-ba06-9dbde2ecf2db/ENCFF443ZDG.bigBed\ color 2,199,185\ longLabel GM19351 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR231BZU Peak\ track wgEncodeReg4Epigenetics_ENCFF443ZDG\ type bigBed 5\ visibility squish\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_fwd CommonMyeloidProgenitorCmpD2+ bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward 0 1945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_fwd CommonMyeloidProgenitorCmpD2+ bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward 1 1945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF690CFF ENCSR157TCS Peak bigBed 5 K562 SMARCE1 peaks 4 1945 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/b42f9a0b-ebc2-4aff-a2c4-19a813c1be5b/ENCFF690CFF.bigBed\ labelFields none\ longLabel K562 SMARCE1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR157TCS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF690CFF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF023VMB ENCSR231BZU Signal bigWig GM19351 ATAC signal 2 1945 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/27/565b551d-789f-41dc-888c-a8b2ad48f654/ENCFF023VMB.bigWig\ color 2,199,185\ longLabel GM19351 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR231BZU Signal\ track wgEncodeReg4Epigenetics_ENCFF023VMB\ type bigWig\ visibility full\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_rev CommonMyeloidProgenitorCmpD2- bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse 0 1946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel CommonMyeloidProgenitorCmpD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_rev CommonMyeloidProgenitorCmpD2- bigWig common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse 1 1946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/common%20myeloid%20progenitor%20CMP%2c%20donor2.CNhs12523.12134-128E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel common myeloid progenitor CMP, donor2_CNhs12523_12134-128E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12134-128E1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel CommonMyeloidProgenitorCmpD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track CommonMyeloidProgenitorCMPDonor2_CNhs12523_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12134-128E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF699ZXR ENCSR157TCS Signal bigWig K562 SMARCE1 ENCSR157TCS signal 2 1946 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/755ecba0-a3c3-4da7-a06e-0a0a9f3b0354/ENCFF699ZXR.bigWig\ color 254,75,173\ longLabel K562 SMARCE1 ENCSR157TCS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR157TCS Signal\ track wgEncodeReg4TfChip_ENCFF699ZXR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF747LGJ ENCSR231FDF Peak bigBed 5 CD8-positive, alpha-beta T cell H3K4me3 peak 4 1946 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3b229167-2882-4836-80ce-e4c40b23e046/ENCFF747LGJ.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR231FDF Peak\ track wgEncodeReg4Epigenetics_ENCFF747LGJ\ type bigBed 5\ visibility squish\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_fwd DendriticCellsMonocyteImmatureD2+ bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward 0 1947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_fwd DendriticCellsMonocyteImmatureD2+ bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward 1 1947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF398VJM ENCSR158LJN Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX peaks 4 1947 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/653be399-9611-422a-8550-dc755d9f2631/ENCFF398VJM.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR158LJN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF398VJM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF892ETR ENCSR231FDF Signal bigWig CD8-positive, alpha-beta T cell H3K4me3 signal 2 1947 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/1d91c472-e5b9-4a56-8860-0be3e6ea9a90/ENCFF892ETR.bigWig\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR231FDF Signal\ track wgEncodeReg4Epigenetics_ENCFF892ETR\ type bigWig\ visibility full\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_rev DendriticCellsMonocyteImmatureD2- bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse 0 1948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_rev DendriticCellsMonocyteImmatureD2- bigWig Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse 1 1948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor2.CNhs12195.11308-117C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor2_CNhs12195_11308-117C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11308-117C3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor2_CNhs12195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11308-117C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF779LQX ENCSR158LJN Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX ENCSR158LJN signal 2 1948 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/c660db06-7faa-4605-bb79-7d3644c9df9c/ENCFF779LQX.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX ENCSR158LJN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR158LJN Signal\ track wgEncodeReg4TfChip_ENCFF779LQX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF069DCH ENCSR231ZZH Peak bigBed 5 Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 peak 4 1948 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d7cdd436-75ee-45e2-93e7-65edc09975a8/ENCFF069DCH.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR231ZZH Peak\ track wgEncodeReg4Epigenetics_ENCFF069DCH\ type bigBed 5\ visibility squish\ DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_fwd DendriticCellsPlasmacytoidD2+ bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward 0 1949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_fwd DendriticCellsPlasmacytoidD2+ bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward 1 1949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF337GJB ENCSR158RYZ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 ZBTB40 peaks 4 1949 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/40e7692a-90d8-4876-ad7b-2294cb8e4b36/ENCFF337GJB.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 ZBTB40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR158RYZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF337GJB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF240SXY ENCSR231ZZH Signal bigWig Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 signal 2 1949 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/75ae942d-5c55-48e9-b043-286ca057188e/ENCFF240SXY.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR231ZZH Signal\ track wgEncodeReg4Epigenetics_ENCFF240SXY\ type bigWig\ visibility full\ DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_rev DendriticCellsPlasmacytoidD2- bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse 0 1950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_rev DendriticCellsPlasmacytoidD2- bigWig Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse 1 1950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor2.CNhs12196.11309-117C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor2_CNhs12196_11309-117C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11309-117C4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor2_CNhs12196_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11309-117C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF403PIA ENCSR158RYZ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 ZBTB40 ENCSR158RYZ signal 2 1950 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ccd16dae-d5a4-4cce-abe0-b981e942aefb/ENCFF403PIA.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 ZBTB40 ENCSR158RYZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR158RYZ Signal\ track wgEncodeReg4TfChip_ENCFF403PIA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF089YTS ENCSR232FAS Peak bigBed 5 Effector memory CD8-positive, alpha-beta T cell male adult 33 years DNase peak 4 1950 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/b3cb9bd3-771d-409f-8cee-6e6a1d5b5ad8/ENCFF089YTS.bigBed\ color 6,218,147\ labelFields none\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 33 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR232FAS Peak\ track wgEncodeReg4Epigenetics_ENCFF089YTS\ type bigBed 5\ visibility squish\ DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_fwd DendriticCellsPlasmacytoidD3+ bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward 0 1951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_fwd DendriticCellsPlasmacytoidD3+ bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward 1 1951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF579HCQ ENCSR159BTO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN5 ZKSCAN5 peaks 4 1951 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/c146c1af-e312-48a8-a39f-0d7e7aaf73fb/ENCFF579HCQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN5 ZKSCAN5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159BTO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF579HCQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF057LCQ ENCSR232FAS Signal bigWig Effector memory CD8-positive, alpha-beta T cell male adult 33 years DNase signal 2 1951 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/c1eff8be-504d-4e83-9c93-d559952212b1/ENCFF057LCQ.bigWig\ color 6,218,147\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR232FAS Signal\ track wgEncodeReg4Epigenetics_ENCFF057LCQ\ type bigWig\ visibility full\ DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_rev DendriticCellsPlasmacytoidD3- bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse 0 1952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_rev DendriticCellsPlasmacytoidD3- bigWig Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse 1 1952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor3.CNhs12200.11385-118B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor3_CNhs12200_11385-118B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11385-118B8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor3_CNhs12200_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11385-118B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF365AMU ENCSR159BTO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN5 ZKSCAN5 ENCSR159BTO signal 2 1952 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/69b9b108-c439-437f-89a8-3a951eb63184/ENCFF365AMU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN5 ZKSCAN5 ENCSR159BTO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159BTO Signal\ track wgEncodeReg4TfChip_ENCFF365AMU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF892MPE ENCSR232NLA Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years DNase peak 4 1952 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/04/dd76b7f7-fec2-46ec-8a84-052990fc4731/ENCFF892MPE.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR232NLA Peak\ track wgEncodeReg4Epigenetics_ENCFF892MPE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF647PIT ENCSR159DQO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF peaks 4 1953 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/7c5c57f0-5ecd-49db-9763-983b927b3772/ENCFF647PIT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159DQO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF647PIT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF472RBD ENCSR232NLA Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years DNase signal 2 1953 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/04/0b5ceea8-6c46-4fc8-bb9b-4d9525c05c8e/ENCFF472RBD.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR232NLA Signal\ track wgEncodeReg4Epigenetics_ENCFF472RBD\ type bigWig\ visibility full\ EosinophilsDonor1_CNhs12547_ctss_fwd EosinophilsD1+ bigWig Eosinophils, donor1_CNhs12547_12244-129H3_forward 0 1953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor1_CNhs12547_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_tpm_fwd EosinophilsD1+ bigWig Eosinophils, donor1_CNhs12547_12244-129H3_forward 1 1953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor1_CNhs12547_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF861RJN ENCSR159DQO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF ENCSR159DQO signal 2 1954 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d9146c4f-e354-4764-ba91-8d387aa297c4/ENCFF861RJN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF ENCSR159DQO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159DQO Signal\ track wgEncodeReg4TfChip_ENCFF861RJN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF696NTN ENCSR232OFD Peak bigBed 5 Right atrium auricular region tissue female adult 51 years CTCF peak 4 1954 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e0ec296f-c130-4ebb-bf9b-d9a3cd4f60dd/ENCFF696NTN.bigBed\ color 0,176,240\ labelFields none\ longLabel Right atrium auricular region tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR232OFD Peak\ track wgEncodeReg4Epigenetics_ENCFF696NTN\ type bigBed 5\ visibility squish\ EosinophilsDonor1_CNhs12547_ctss_rev EosinophilsD1- bigWig Eosinophils, donor1_CNhs12547_12244-129H3_reverse 0 1954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor1_CNhs12547_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ EosinophilsDonor1_CNhs12547_tpm_rev EosinophilsD1- bigWig Eosinophils, donor1_CNhs12547_12244-129H3_reverse 1 1954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor1.CNhs12547.12244-129H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor1_CNhs12547_12244-129H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12244-129H3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor1_CNhs12547_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12244-129H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF892ULS ENCSR159GFL Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF518A ZNF518A peaks 4 1955 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/d677720e-8e41-4e6e-babf-725ed00f66ef/ENCFF892ULS.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF518A ZNF518A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159GFL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF892ULS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF872ERK ENCSR232OFD Signal bigWig Right atrium auricular region tissue female adult 51 years CTCF signal 2 1955 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/8a560cb5-86e5-4e8a-8d5b-dff74b43b5c7/ENCFF872ERK.bigWig\ color 0,176,240\ longLabel Right atrium auricular region tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR232OFD Signal\ track wgEncodeReg4Epigenetics_ENCFF872ERK\ type bigWig\ visibility full\ EosinophilsDonor2_CNhs12548_ctss_fwd EosinophilsD2+ bigWig Eosinophils, donor2_CNhs12548_12245-129H4_forward 0 1955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor2_CNhs12548_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_tpm_fwd EosinophilsD2+ bigWig Eosinophils, donor2_CNhs12548_12245-129H4_forward 1 1955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor2_CNhs12548_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF419WYD ENCSR159GFL Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF518A ZNF518A ENCSR159GFL signal 2 1956 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/c2baee8c-b44c-4235-9bf7-a0362b1bda8f/ENCFF419WYD.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF518A ZNF518A ENCSR159GFL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159GFL Signal\ track wgEncodeReg4TfChip_ENCFF419WYD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF016UGD ENCSR232VZV Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 1956 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/50b0dc32-1064-4dd8-8f08-a677b33b66e4/ENCFF016UGD.bigBed\ color 181,145,0\ longLabel Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR232VZV Peak\ track wgEncodeReg4Epigenetics_ENCFF016UGD\ type bigBed 5\ visibility squish\ EosinophilsDonor2_CNhs12548_ctss_rev EosinophilsD2- bigWig Eosinophils, donor2_CNhs12548_12245-129H4_reverse 0 1956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor2_CNhs12548_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ EosinophilsDonor2_CNhs12548_tpm_rev EosinophilsD2- bigWig Eosinophils, donor2_CNhs12548_12245-129H4_reverse 1 1956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor2.CNhs12548.12245-129H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor2_CNhs12548_12245-129H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12245-129H4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor2_CNhs12548_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12245-129H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF282LOA ENCSR159OCC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 peaks 4 1957 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8bb143fb-d0e1-4bb7-ac12-3e0f7fed8017/ENCFF282LOA.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159OCC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF282LOA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF868GED ENCSR232VZV Signal bigWig Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 1957 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/5afc2b9c-8448-4f07-81a4-950050238ce8/ENCFF868GED.bigWig\ color 181,145,0\ longLabel Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR232VZV Signal\ track wgEncodeReg4Epigenetics_ENCFF868GED\ type bigWig\ visibility full\ EosinophilsDonor3_CNhs12549_ctss_fwd EosinophilsD3+ bigWig Eosinophils, donor3_CNhs12549_12246-129H5_forward 0 1957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor3_CNhs12549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_tpm_fwd EosinophilsD3+ bigWig Eosinophils, donor3_CNhs12549_12246-129H5_forward 1 1957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track EosinophilsDonor3_CNhs12549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF911VQF ENCSR159OCC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 ENCSR159OCC signal 2 1958 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/1e85acb5-0335-4fc8-922f-b7fd0d110d6b/ENCFF911VQF.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 ENCSR159OCC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159OCC Signal\ track wgEncodeReg4TfChip_ENCFF911VQF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF926PVJ ENCSR233DFT Peak bigBed 5 Head of caudate nucleus tissue male adult 83 years DNase peak 4 1958 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/fa58ade3-e0d0-4d19-8655-f86a43d71816/ENCFF926PVJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR233DFT Peak\ track wgEncodeReg4Epigenetics_ENCFF926PVJ\ type bigBed 5\ visibility squish\ EosinophilsDonor3_CNhs12549_ctss_rev EosinophilsD3- bigWig Eosinophils, donor3_CNhs12549_12246-129H5_reverse 0 1958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel EosinophilsD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor3_CNhs12549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ EosinophilsDonor3_CNhs12549_tpm_rev EosinophilsD3- bigWig Eosinophils, donor3_CNhs12549_12246-129H5_reverse 1 1958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Eosinophils%2c%20donor3.CNhs12549.12246-129H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Eosinophils, donor3_CNhs12549_12246-129H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12246-129H5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel EosinophilsD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track EosinophilsDonor3_CNhs12549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12246-129H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF114PDZ ENCSR159RBE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1 GLYR1 peaks 4 1959 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/232b0773-c22f-4964-841e-d8c86bf3f334/ENCFF114PDZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1 GLYR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159RBE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF114PDZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF775TPT ENCSR233DFT Signal bigWig Head of caudate nucleus tissue male adult 83 years DNase signal 2 1959 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/2616d1df-9697-4e8d-ace9-8ff1ebda46c0/ENCFF775TPT.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR233DFT Signal\ track wgEncodeReg4Epigenetics_ENCFF775TPT\ type bigWig\ visibility full\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_fwd GranulocyteMacrophageProgenitorD1+ bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward 0 1959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_fwd GranulocyteMacrophageProgenitorD1+ bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward 1 1959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF889LBD ENCSR159RBE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1 GLYR1 ENCSR159RBE signal 2 1960 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/e79d1454-0ade-4a12-b3e5-01deb89286a5/ENCFF889LBD.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1 GLYR1 ENCSR159RBE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR159RBE Signal\ track wgEncodeReg4TfChip_ENCFF889LBD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF365VHF ENCSR233HSC Peak bigBed 5 GM21723 ATAC peak 4 1960 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/eb21915b-3dad-4d3d-8401-dc445037f19c/ENCFF365VHF.bigBed\ color 2,199,185\ longLabel GM21723 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR233HSC Peak\ track wgEncodeReg4Epigenetics_ENCFF365VHF\ type bigBed 5\ visibility squish\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_rev GranulocyteMacrophageProgenitorD1- bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse 0 1960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_rev GranulocyteMacrophageProgenitorD1- bigWig granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse 1 1960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor1.CNhs12519.12131-128D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor1_CNhs12519_12131-128D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12131-128D7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor1_CNhs12519_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12131-128D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF071LJW ENCSR160QYK Peak bigBed 5 K562 GATAD2A peaks 4 1961 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/db45b4f1-941d-40b9-a47e-5ea45ab9acf1/ENCFF071LJW.bigBed\ labelFields none\ longLabel K562 GATAD2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR160QYK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF071LJW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF353OEE ENCSR233HSC Signal bigWig GM21723 ATAC signal 2 1961 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/344504d8-fe8d-4461-85bb-d4cd42493484/ENCFF353OEE.bigWig\ color 2,199,185\ longLabel GM21723 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR233HSC Signal\ track wgEncodeReg4Epigenetics_ENCFF353OEE\ type bigWig\ visibility full\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_fwd GranulocyteMacrophageProgenitorD2+ bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward 0 1961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_fwd GranulocyteMacrophageProgenitorD2+ bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward 1 1961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF759EVQ ENCSR160QYK Signal bigWig K562 GATAD2A ENCSR160QYK signal 2 1962 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/04cd5a76-5a07-455c-90ab-d76974634d67/ENCFF759EVQ.bigWig\ color 254,75,173\ longLabel K562 GATAD2A ENCSR160QYK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR160QYK Signal\ track wgEncodeReg4TfChip_ENCFF759EVQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF755YHN ENCSR233RWF Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 1962 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/6e96b0d2-6206-4256-8b58-22a3fa674f47/ENCFF755YHN.bigBed\ color 181,145,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR233RWF Peak\ track wgEncodeReg4Epigenetics_ENCFF755YHN\ type bigBed 5\ visibility squish\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_rev GranulocyteMacrophageProgenitorD2- bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse 0 1962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_rev GranulocyteMacrophageProgenitorD2- bigWig granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse 1 1962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor2.CNhs12524.12135-128E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor2_CNhs12524_12135-128E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12135-128E2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor2_CNhs12524_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12135-128E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF987NIN ENCSR160ZLP Peak bigBed 5 H1 KDM5A peaks 4 1963 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/4e84ac77-477e-48af-a1f2-84f6e620052d/ENCFF987NIN.bigBed\ labelFields none\ longLabel H1 KDM5A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR160ZLP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF987NIN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF028IBW ENCSR233RWF Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 1963 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/d1f0d3ef-853b-4b6e-9d9b-a6dee3cb32ed/ENCFF028IBW.bigWig\ color 181,145,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR233RWF Signal\ track wgEncodeReg4Epigenetics_ENCFF028IBW\ type bigWig\ visibility full\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_fwd GranulocyteMacrophageProgenitorD3+ bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward 0 1963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_fwd GranulocyteMacrophageProgenitorD3+ bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward 1 1963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF918XRD ENCSR160ZLP Signal bigWig H1 KDM5A ENCSR160ZLP signal 2 1964 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/e3db672f-fdf9-42cb-836a-f8602d39dbf1/ENCFF918XRD.bigWig\ color 118,158,101\ longLabel H1 KDM5A ENCSR160ZLP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR160ZLP Signal\ track wgEncodeReg4TfChip_ENCFF918XRD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF871UJJ ENCSR234BAD Peak bigBed 5 Multiple sclerosis immature natural killer cell H3K4me3 peak 4 1964 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/e108797b-d75b-458a-aa60-60ee08e6b04f/ENCFF871UJJ.bigBed\ color 255,0,0\ longLabel Multiple sclerosis immature natural killer cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR234BAD Peak\ track wgEncodeReg4Epigenetics_ENCFF871UJJ\ type bigBed 5\ visibility squish\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_rev GranulocyteMacrophageProgenitorD3- bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse 0 1964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel GranulocyteMacrophageProgenitorD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_rev GranulocyteMacrophageProgenitorD3- bigWig granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse 1 1964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/granulocyte%20macrophage%20progenitor%2c%20donor3.CNhs12528.12139-128E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel granulocyte macrophage progenitor, donor3_CNhs12528_12139-128E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12139-128E6 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel GranulocyteMacrophageProgenitorD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track GranulocyteMacrophageProgenitorDonor3_CNhs12528_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12139-128E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF772HNB ENCSR161CZA Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens ATOH8 ATOH8 peaks 4 1965 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/33dc6653-665b-4918-a873-3ce117348ccb/ENCFF772HNB.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens ATOH8 ATOH8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR161CZA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF772HNB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF254QZL ENCSR234BAD Signal bigWig Multiple sclerosis immature natural killer cell H3K4me3 signal 2 1965 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/50e4f863-ba96-4a6a-85b6-c18e91a8c94f/ENCFF254QZL.bigWig\ color 255,0,0\ longLabel Multiple sclerosis immature natural killer cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR234BAD Signal\ track wgEncodeReg4Epigenetics_ENCFF254QZL\ type bigWig\ visibility full\ MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_fwd MallassezCellsD1+ bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward 0 1965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_fwd MallassezCellsD1+ bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward 1 1965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF126OLZ ENCSR161CZA Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens ATOH8 ATOH8 ENCSR161CZA signal 2 1966 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/bf77e160-4c00-4c58-89b6-9af33385816e/ENCFF126OLZ.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens ATOH8 ATOH8 ENCSR161CZA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR161CZA Signal\ track wgEncodeReg4TfChip_ENCFF126OLZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF784CUV ENCSR234VLI Peak bigBed 5 Head of caudate nucleus tissue male adult 87 years DNase peak 4 1966 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/505e997e-d85f-47fd-90d4-eaf6e89622d1/ENCFF784CUV.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR234VLI Peak\ track wgEncodeReg4Epigenetics_ENCFF784CUV\ type bigBed 5\ visibility squish\ MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_rev MallassezCellsD1- bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse 0 1966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor1MZH3_CNhs12538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_rev MallassezCellsD1- bigWig Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse 1 1966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor1%20%28MZH3%29.CNhs12538.12142-128E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor1 (MZH3)_CNhs12538_12142-128E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12142-128E9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor1MZH3_CNhs12538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12142-128E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF299JBQ ENCSR162IEM Peak bigBed 5 K562 MYBL2 peaks 4 1967 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/8b33dfdc-73bc-4090-a484-1325d1b0a9ce/ENCFF299JBQ.bigBed\ labelFields none\ longLabel K562 MYBL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR162IEM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF299JBQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF289FQY ENCSR234VLI Signal bigWig Head of caudate nucleus tissue male adult 87 years DNase signal 2 1967 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/50bdc7ee-573a-4877-b352-4268e49d2bc9/ENCFF289FQY.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR234VLI Signal\ track wgEncodeReg4Epigenetics_ENCFF289FQY\ type bigWig\ visibility full\ MatureAdipocyteDonor1_CNhs12558_ctss_fwd MatureAdipocyteD1+ bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_forward 0 1967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor1_CNhs12558_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_tpm_fwd MatureAdipocyteD1+ bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_forward 1 1967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor1_CNhs12558_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF275EAX ENCSR162IEM Signal bigWig K562 MYBL2 ENCSR162IEM signal 2 1968 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/3e194ded-5d83-42b5-a92b-611ade36c074/ENCFF275EAX.bigWig\ color 254,75,173\ longLabel K562 MYBL2 ENCSR162IEM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR162IEM Signal\ track wgEncodeReg4TfChip_ENCFF275EAX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF446TXW ENCSR234YIU Peak bigBed 5 Adrenal gland tissue male adult 34 years H3K4me3 peak 4 1968 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2dfaa442-5ba9-4fd7-b88f-af0fcf6cacd2/ENCFF446TXW.bigBed\ color 255,0,0\ longLabel Adrenal gland tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR234YIU Peak\ track wgEncodeReg4Epigenetics_ENCFF446TXW\ type bigBed 5\ visibility squish\ MatureAdipocyteDonor1_CNhs12558_ctss_rev MatureAdipocyteD1- bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_reverse 0 1968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor1_CNhs12558_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor1_CNhs12558_tpm_rev MatureAdipocyteD1- bigWig mature adipocyte, donor1_CNhs12558_12231-129F8_reverse 1 1968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor1.CNhs12558.12231-129F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor1_CNhs12558_12231-129F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12231-129F8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor1_CNhs12558_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12231-129F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF809XHP ENCSR163IUV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ MAZ peaks 4 1969 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/aea37853-48f1-4011-beaf-0e24f40878c8/ENCFF809XHP.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR163IUV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF809XHP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF928LBS ENCSR234YIU Signal bigWig Adrenal gland tissue male adult 34 years H3K4me3 signal 2 1969 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/bbfe8797-0e38-4212-b4ea-0938961d3065/ENCFF928LBS.bigWig\ color 255,0,0\ longLabel Adrenal gland tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR234YIU Signal\ track wgEncodeReg4Epigenetics_ENCFF928LBS\ type bigWig\ visibility full\ MatureAdipocyteDonor2_CNhs12559_ctss_fwd MatureAdipocyteD2+ bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_forward 0 1969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor2_CNhs12559_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_tpm_fwd MatureAdipocyteD2+ bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_forward 1 1969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor2_CNhs12559_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF454IIJ ENCSR163IUV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ MAZ ENCSR163IUV signal 2 1970 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/9d9820b6-50bf-45ed-99c3-cd9b599590fa/ENCFF454IIJ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ MAZ ENCSR163IUV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR163IUV Signal\ track wgEncodeReg4TfChip_ENCFF454IIJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF430RZK ENCSR235BES Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 88 years H3K4me3 peak 4 1970 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6028decc-4e8a-41b4-91a4-4c937904d615/ENCFF430RZK.bigBed\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 88 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235BES Peak\ track wgEncodeReg4Epigenetics_ENCFF430RZK\ type bigBed 5\ visibility squish\ MatureAdipocyteDonor2_CNhs12559_ctss_rev MatureAdipocyteD2- bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_reverse 0 1970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor2_CNhs12559_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor2_CNhs12559_tpm_rev MatureAdipocyteD2- bigWig mature adipocyte, donor2_CNhs12559_12232-129F9_reverse 1 1970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor2.CNhs12559.12232-129F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor2_CNhs12559_12232-129F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12232-129F9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor2_CNhs12559_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12232-129F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF638TIB ENCSR163RYW Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF189 ZNF189 peaks 4 1971 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/20a418ed-2ea6-427a-8f88-62b7a6bb3af8/ENCFF638TIB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF189 ZNF189 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR163RYW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF638TIB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF563YFA ENCSR235BES Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 88 years H3K4me3 signal 2 1971 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/56b23322-f3f9-4662-aa6b-7bf823322d23/ENCFF563YFA.bigWig\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 88 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235BES Signal\ track wgEncodeReg4Epigenetics_ENCFF563YFA\ type bigWig\ visibility full\ MatureAdipocyteDonor3_CNhs12560_ctss_fwd MatureAdipocyteD3+ bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_forward 0 1971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor3_CNhs12560_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_tpm_fwd MatureAdipocyteD3+ bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_forward 1 1971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor3_CNhs12560_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF323CCB ENCSR163RYW Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF189 ZNF189 ENCSR163RYW signal 2 1972 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/a079b979-53c6-4347-ae32-0790dfa0bd13/ENCFF323CCB.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF189 ZNF189 ENCSR163RYW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR163RYW Signal\ track wgEncodeReg4TfChip_ENCFF323CCB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF615GQA ENCSR235KRX Peak bigBed 5 Squamous cell carcinoma skin epidermis tissue male adult 75 years H3K27ac peak 4 1972 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/2b334939-5ffc-45a2-bf48-3c616a618fc1/ENCFF615GQA.bigBed\ color 181,145,0\ longLabel Squamous cell carcinoma skin epidermis tissue male adult 75 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235KRX Peak\ track wgEncodeReg4Epigenetics_ENCFF615GQA\ type bigBed 5\ visibility squish\ MatureAdipocyteDonor3_CNhs12560_ctss_rev MatureAdipocyteD3- bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_reverse 0 1972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor3_CNhs12560_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor3_CNhs12560_tpm_rev MatureAdipocyteD3- bigWig mature adipocyte, donor3_CNhs12560_12233-129G1_reverse 1 1972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor3.CNhs12560.12233-129G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor3_CNhs12560_12233-129G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12233-129G1 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor3_CNhs12560_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12233-129G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF005CJI ENCSR163ULN Peak bigBed 5 HFFc6 CTCF peaks 4 1973 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/0d56af5b-4e21-4655-998e-8eef50762e13/ENCFF005CJI.bigBed\ labelFields none\ longLabel HFFc6 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR163ULN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF005CJI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF830XDO ENCSR235KRX Signal bigWig Squamous cell carcinoma skin epidermis tissue male adult 75 years H3K27ac signal 2 1973 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/21539bb0-2641-4778-9540-85deb0cebce2/ENCFF830XDO.bigWig\ color 181,145,0\ longLabel Squamous cell carcinoma skin epidermis tissue male adult 75 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235KRX Signal\ track wgEncodeReg4Epigenetics_ENCFF830XDO\ type bigWig\ visibility full\ MatureAdipocyteDonor4_CNhs12562_ctss_fwd MatureAdipocyteD4+ bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_forward 0 1973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD4+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor4_CNhs12562_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_tpm_fwd MatureAdipocyteD4+ bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_forward 1 1973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD4+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MatureAdipocyteDonor4_CNhs12562_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF406SZM ENCSR163ULN Signal bigWig HFFc6 CTCF ENCSR163ULN signal 2 1974 20 74 159 137 164 207 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/3b5ae14c-91c2-4951-8bed-b4b170db480a/ENCFF406SZM.bigWig\ color 20,74,159\ longLabel HFFc6 CTCF ENCSR163ULN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR163ULN Signal\ track wgEncodeReg4TfChip_ENCFF406SZM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF971VKM ENCSR235OZX Peak bigBed 5 CD8-positive, alpha-beta T cell female adult 33 years DNase peak 4 1974 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/b135bbd5-1107-4ae3-81bc-5304e8d1b9d0/ENCFF971VKM.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta T cell female adult 33 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235OZX Peak\ track wgEncodeReg4Epigenetics_ENCFF971VKM\ type bigBed 5\ visibility squish\ MatureAdipocyteDonor4_CNhs12562_ctss_rev MatureAdipocyteD4- bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_reverse 0 1974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MatureAdipocyteD4-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor4_CNhs12562_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ MatureAdipocyteDonor4_CNhs12562_tpm_rev MatureAdipocyteD4- bigWig mature adipocyte, donor4_CNhs12562_12234-129G2_reverse 1 1974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mature%20adipocyte%2c%20donor4.CNhs12562.12234-129G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mature adipocyte, donor4_CNhs12562_12234-129G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12234-129G2 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MatureAdipocyteD4-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MatureAdipocyteDonor4_CNhs12562_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12234-129G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF329VCH ENCSR164RIC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF444 ZNF444 peaks 4 1975 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/1f2a0877-58ec-4903-9fb7-ac975fa5294c/ENCFF329VCH.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF444 ZNF444 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR164RIC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF329VCH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF991DNH ENCSR235OZX Signal bigWig CD8-positive, alpha-beta T cell female adult 33 years DNase signal 2 1975 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/c6c05e1e-346b-4fa9-b170-1c0c4902f9a2/ENCFF991DNH.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta T cell female adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235OZX Signal\ track wgEncodeReg4Epigenetics_ENCFF991DNH\ type bigWig\ visibility full\ MesothelialCellsDonor2_CNhs12197_ctss_fwd MesothelialCellsD2+ bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward 0 1975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor2_CNhs12197_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_tpm_fwd MesothelialCellsD2+ bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward 1 1975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor2_CNhs12197_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF330STE ENCSR164RIC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF444 ZNF444 ENCSR164RIC signal 2 1976 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b1213ee7-0829-44b7-a6df-881bbe26588e/ENCFF330STE.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF444 ZNF444 ENCSR164RIC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR164RIC Signal\ track wgEncodeReg4TfChip_ENCFF330STE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF434ZYY ENCSR235WEI Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 1976 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/df1e0558-a815-4a28-89ac-44b6799ba627/ENCFF434ZYY.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235WEI Peak\ track wgEncodeReg4Epigenetics_ENCFF434ZYY\ type bigBed 5\ visibility squish\ MesothelialCellsDonor2_CNhs12197_ctss_rev MesothelialCellsD2- bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse 0 1976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor2_CNhs12197_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor2_CNhs12197_tpm_rev MesothelialCellsD2- bigWig Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse 1 1976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor2.CNhs12197.12156-128G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor2_CNhs12197_12156-128G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12156-128G5 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor2_CNhs12197_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12156-128G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF165NTY ENCSR164YJZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKB2 NFKB2 peaks 4 1977 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/82972b59-8d77-4ec9-8bfe-1331e469f47f/ENCFF165NTY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKB2 NFKB2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR164YJZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF165NTY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF766SYL ENCSR235WEI Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 1977 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9a677e8b-274c-4fcb-87e2-b42a3039b0ea/ENCFF766SYL.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235WEI Signal\ track wgEncodeReg4Epigenetics_ENCFF766SYL\ type bigWig\ visibility full\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_fwd NasalEpithelialCellsD1Tr2+ bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward 0 1977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_fwd NasalEpithelialCellsD1Tr2+ bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward 1 1977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF166NEA ENCSR164YJZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKB2 NFKB2 ENCSR164YJZ signal 2 1978 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/a47dbf2e-e3a3-459d-a534-74e9dae28ef1/ENCFF166NEA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKB2 NFKB2 ENCSR164YJZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR164YJZ Signal\ track wgEncodeReg4TfChip_ENCFF166NEA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF383NOB ENCSR235ZBF Peak bigBed 5 Spleen tissue male adult 34 years H3K27ac peak 4 1978 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/28bad0bd-4135-4ab2-ba27-88bc78c5a781/ENCFF383NOB.bigBed\ color 181,145,0\ longLabel Spleen tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235ZBF Peak\ track wgEncodeReg4Epigenetics_ENCFF383NOB\ type bigBed 5\ visibility squish\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_rev NasalEpithelialCellsD1Tr2- bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse 0 1978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_rev NasalEpithelialCellsD1Tr2- bigWig nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse 1 1978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep2.CNhs12554.12226-129F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep2_CNhs12554_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep2_CNhs12554_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF717MYN ENCSR165YVX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 peaks 4 1979 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/5f98c8ba-cf40-4024-8e68-3096c719c7e3/ENCFF717MYN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR165YVX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF717MYN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF859PGH ENCSR235ZBF Signal bigWig Spleen tissue male adult 34 years H3K27ac signal 2 1979 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/e47083d5-ced0-4242-859e-a3455280b41f/ENCFF859PGH.bigWig\ color 181,145,0\ longLabel Spleen tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR235ZBF Signal\ track wgEncodeReg4Epigenetics_ENCFF859PGH\ type bigWig\ visibility full\ NeutrophilPMNDonor1_CNhs12522_ctss_fwd NeutrophilPmnD1+ bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_forward 0 1979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor1_CNhs12522_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_tpm_fwd NeutrophilPmnD1+ bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_forward 1 1979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor1_CNhs12522_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF277OWZ ENCSR165YVX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 ENCSR165YVX signal 2 1980 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/123d0678-eeeb-42b0-b63a-db8a36b69499/ENCFF277OWZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 MXD1 ENCSR165YVX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR165YVX Signal\ track wgEncodeReg4TfChip_ENCFF277OWZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF334WCE ENCSR236KOX Peak bigBed 5 Heart right ventricle tissue male adult 40 years H3K4me3 peak 4 1980 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/113b8d8e-8583-4865-8c3e-0c8bc9fbd089/ENCFF334WCE.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 40 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236KOX Peak\ track wgEncodeReg4Epigenetics_ENCFF334WCE\ type bigBed 5\ visibility squish\ NeutrophilPMNDonor1_CNhs12522_ctss_rev NeutrophilPmnD1- bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse 0 1980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor1_CNhs12522_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor1_CNhs12522_tpm_rev NeutrophilPmnD1- bigWig neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse 1 1980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor1.CNhs12522.12133-128D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor1_CNhs12522_12133-128D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12133-128D9 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor1_CNhs12522_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12133-128D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF284OXF ENCSR167JBG Peak bigBed 5 K562 stably expressing DIDO1 DIDO1 peaks 4 1981 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/3058a715-ab13-4607-9f37-028515b7142f/ENCFF284OXF.bigBed\ labelFields none\ longLabel K562 stably expressing DIDO1 DIDO1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR167JBG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF284OXF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF119FKH ENCSR236KOX Signal bigWig Heart right ventricle tissue male adult 40 years H3K4me3 signal 2 1981 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/f24b545b-52cb-46c5-94cf-dd2c39965354/ENCFF119FKH.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 40 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236KOX Signal\ track wgEncodeReg4Epigenetics_ENCFF119FKH\ type bigWig\ visibility full\ NeutrophilPMNDonor2_CNhs12526_ctss_fwd NeutrophilPmnD2+ bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_forward 0 1981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor2_CNhs12526_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_tpm_fwd NeutrophilPmnD2+ bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_forward 1 1981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor2_CNhs12526_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF625IEL ENCSR167JBG Signal bigWig K562 stably expressing DIDO1 DIDO1 ENCSR167JBG signal 2 1982 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/19f236bf-1923-475d-952d-c1b861c31bad/ENCFF625IEL.bigWig\ color 254,75,173\ longLabel K562 stably expressing DIDO1 DIDO1 ENCSR167JBG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR167JBG Signal\ track wgEncodeReg4TfChip_ENCFF625IEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF068NNQ ENCSR236KPK Peak bigBed 5 Pancreas tissue female adult 47 years DNase peak 4 1982 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/6a16e502-ae94-42b3-a55d-40d6b8ac64f3/ENCFF068NNQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Pancreas tissue female adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236KPK Peak\ track wgEncodeReg4Epigenetics_ENCFF068NNQ\ type bigBed 5\ visibility squish\ NeutrophilPMNDonor2_CNhs12526_ctss_rev NeutrophilPmnD2- bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse 0 1982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor2_CNhs12526_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor2_CNhs12526_tpm_rev NeutrophilPmnD2- bigWig neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse 1 1982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor2.CNhs12526.12137-128E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor2_CNhs12526_12137-128E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12137-128E4 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor2_CNhs12526_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12137-128E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF838QCD ENCSR167KBO Peak bigBed 5 K562 ZNF316 peaks 4 1983 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/67da0384-d646-49dc-ac9c-5c4e9eb2012c/ENCFF838QCD.bigBed\ labelFields none\ longLabel K562 ZNF316 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR167KBO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF838QCD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF707LYV ENCSR236KPK Signal bigWig Pancreas tissue female adult 47 years DNase signal 2 1983 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/b148e13e-c9ba-47bd-b295-eeade7413604/ENCFF707LYV.bigWig\ color 6,218,147\ longLabel Pancreas tissue female adult 47 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236KPK Signal\ track wgEncodeReg4Epigenetics_ENCFF707LYV\ type bigWig\ visibility full\ NeutrophilPMNDonor3_CNhs12530_ctss_fwd NeutrophilPmnD3+ bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_forward 0 1983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor3_CNhs12530_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_tpm_fwd NeutrophilPmnD3+ bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_forward 1 1983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track NeutrophilPMNDonor3_CNhs12530_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF364MPH ENCSR167KBO Signal bigWig K562 ZNF316 ENCSR167KBO signal 2 1984 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/2d4f897e-890b-437e-ba4b-e62e00546c21/ENCFF364MPH.bigWig\ color 254,75,173\ longLabel K562 ZNF316 ENCSR167KBO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR167KBO Signal\ track wgEncodeReg4TfChip_ENCFF364MPH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF732RVZ ENCSR236OFL Peak bigBed 5 Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K4me3 peak 4 1984 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/8d716ca6-091d-45e9-b234-32751ce44112/ENCFF732RVZ.bigBed\ color 255,0,0\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236OFL Peak\ track wgEncodeReg4Epigenetics_ENCFF732RVZ\ type bigBed 5\ visibility squish\ NeutrophilPMNDonor3_CNhs12530_ctss_rev NeutrophilPmnD3- bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse 0 1984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilPmnD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor3_CNhs12530_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ NeutrophilPMNDonor3_CNhs12530_tpm_rev NeutrophilPmnD3- bigWig neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse 1 1984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/neutrophil%20PMN%2c%20donor3.CNhs12530.12141-128E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel neutrophil PMN, donor3_CNhs12530_12141-128E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12141-128E8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilPmnD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track NeutrophilPMNDonor3_CNhs12530_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12141-128E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF843EBZ ENCSR167MTG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 peaks 4 1985 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/773e448c-0cbe-4d5a-8df8-e7ae9bda99ae/ENCFF843EBZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR167MTG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF843EBZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF147IYE ENCSR236OFL Signal bigWig Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K4me3 signal 2 1985 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/4d7b9a08-123b-4fcb-bc3f-4c859623cf82/ENCFF147IYE.bigWig\ color 255,0,0\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236OFL Signal\ track wgEncodeReg4Epigenetics_ENCFF147IYE\ type bigWig\ visibility full\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_fwd Promyelocytes/myelocytesPmcD1+ bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward 0 1985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_fwd Promyelocytes/myelocytesPmcD1+ bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward 1 1985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD1+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF338UCS ENCSR167MTG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 ENCSR167MTG signal 2 1986 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/5e8e1a9f-62d6-4e16-93ab-a3c34f98b334/ENCFF338UCS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAG1 STAG1 ENCSR167MTG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR167MTG Signal\ track wgEncodeReg4TfChip_ENCFF338UCS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF951GMD ENCSR236XRR Peak bigBed 5 IPS-15b H3K4me3 peak 4 1986 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/17eb5974-8d2d-41c1-8107-b9c3da99985a/ENCFF951GMD.bigBed\ color 255,0,0\ longLabel IPS-15b H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236XRR Peak\ track wgEncodeReg4Epigenetics_ENCFF951GMD\ type bigBed 5\ visibility squish\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_rev Promyelocytes/myelocytesPmcD1- bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse 0 1986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_rev Promyelocytes/myelocytesPmcD1- bigWig promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse 1 1986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor1.CNhs12520.12132-128D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor1_CNhs12520_12132-128D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12132-128D8 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD1-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor1_CNhs12520_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12132-128D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF069FSH ENCSR168AUX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1 AHDC1 peaks 4 1987 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/432f08f7-788d-4670-af14-21068b16b87f/ENCFF069FSH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1 AHDC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168AUX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF069FSH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF316EML ENCSR236XRR Signal bigWig IPS-15b H3K4me3 signal 2 1987 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/fa0552fe-25f7-41cc-a427-bf4933b5f5e1/ENCFF316EML.bigWig\ color 255,0,0\ longLabel IPS-15b H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR236XRR Signal\ track wgEncodeReg4Epigenetics_ENCFF316EML\ type bigWig\ visibility full\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_fwd Promyelocytes/myelocytesPmcD2+ bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward 0 1987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_fwd Promyelocytes/myelocytesPmcD2+ bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward 1 1987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD2+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF536PPX ENCSR168AUX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1 AHDC1 ENCSR168AUX signal 2 1988 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/6358de62-2575-4bc0-ba9d-1c19e2271b3b/ENCFF536PPX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1 AHDC1 ENCSR168AUX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168AUX Signal\ track wgEncodeReg4TfChip_ENCFF536PPX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF502FSS ENCSR237BOF Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase peak 4 1988 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/640518f7-0367-4354-b007-50c341f0ea68/ENCFF502FSS.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR237BOF Peak\ track wgEncodeReg4Epigenetics_ENCFF502FSS\ type bigBed 5\ visibility squish\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_rev Promyelocytes/myelocytesPmcD2- bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse 0 1988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_rev Promyelocytes/myelocytesPmcD2- bigWig promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse 1 1988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor2.CNhs12525.12136-128E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor2_CNhs12525_12136-128E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12136-128E3 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD2-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor2_CNhs12525_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12136-128E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF471USR ENCSR168CEE Peak bigBed 5 K562 NCOA6 peaks 4 1989 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/3cda9ce9-c8ca-4895-806b-ff97ff2de3d7/ENCFF471USR.bigBed\ labelFields none\ longLabel K562 NCOA6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168CEE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF471USR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF617ISJ ENCSR237BOF Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase signal 2 1989 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/3ac6d675-5811-4ced-af59-9d4746232980/ENCFF617ISJ.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR237BOF Signal\ track wgEncodeReg4Epigenetics_ENCFF617ISJ\ type bigWig\ visibility full\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_fwd Promyelocytes/myelocytesPmcD3+ bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward 0 1989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_fwd Promyelocytes/myelocytesPmcD3+ bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward 1 1989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD3+\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=forward\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF428DEK ENCSR168CEE Signal bigWig K562 NCOA6 ENCSR168CEE signal 2 1990 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/d29913b1-9211-4b5b-8805-7fc8962cc690/ENCFF428DEK.bigWig\ color 254,75,173\ longLabel K562 NCOA6 ENCSR168CEE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168CEE Signal\ track wgEncodeReg4TfChip_ENCFF428DEK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF677SUG ENCSR237BTA Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 81 years CTCF peak 4 1990 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/d9b30310-c1ee-4185-a192-e9b399b1fe2c/ENCFF677SUG.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 81 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR237BTA Peak\ track wgEncodeReg4Epigenetics_ENCFF677SUG\ type bigBed 5\ visibility squish\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_rev Promyelocytes/myelocytesPmcD3- bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse 0 1990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Promyelocytes/myelocytesPmcD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_rev Promyelocytes/myelocytesPmcD3- bigWig promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse 1 1990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/promyelocytes%20myelocytes%20PMC%2c%20donor3.CNhs12529.12140-128E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel promyelocytes/myelocytes PMC, donor3_CNhs12529_12140-128E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12140-128E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Promyelocytes/myelocytesPmcD3-\ subGroups sequenceTech=LQhCAGE category=primaryCell strand=reverse\ track PromyelocytesmyelocytesPMCDonor3_CNhs12529_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12140-128E7\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_ctss_fwd AdipocyteBreastD1+ bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward 0 1991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor1_CNhs11051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_tpm_fwd AdipocyteBreastD1+ bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward 1 1991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor1_CNhs11051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF507HCX ENCSR168DYA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX peaks 4 1991 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/9fd3d509-8260-474a-9dbe-0ecaedb0491a/ENCFF507HCX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168DYA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF507HCX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF796CNP ENCSR237BTA Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 81 years CTCF signal 2 1991 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/875ffca6-d0fb-4173-858d-17477a028639/ENCFF796CNP.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 81 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR237BTA Signal\ track wgEncodeReg4Epigenetics_ENCFF796CNP\ type bigWig\ visibility full\ AdipocyteBreastDonor1_CNhs11051_ctss_rev AdipocyteBreastD1- bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse 0 1992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor1_CNhs11051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor1_CNhs11051_tpm_rev AdipocyteBreastD1- bigWig Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse 1 1992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor1.CNhs11051.11376-118A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor1_CNhs11051_11376-118A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11376-118A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor1_CNhs11051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11376-118A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF633BYS ENCSR168DYA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX ENCSR168DYA signal 2 1992 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/76e64842-7866-4d35-8b41-ffd349ea98d4/ENCFF633BYS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAX MAX ENCSR168DYA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168DYA Signal\ track wgEncodeReg4TfChip_ENCFF633BYS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF205HHB ENCSR237QFJ Peak bigBed 5 Small intestine tissue male embryo 108 days H3K4me3 peak 4 1992 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/6c7b3205-ee77-44a2-8291-cbaa7a1f9539/ENCFF205HHB.bigBed\ color 255,0,0\ longLabel Small intestine tissue male embryo 108 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR237QFJ Peak\ track wgEncodeReg4Epigenetics_ENCFF205HHB\ type bigBed 5\ visibility squish\ AdipocyteBreastDonor2_CNhs11969_ctss_fwd AdipocyteBreastD2+ bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward 0 1993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor2_CNhs11969_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_tpm_fwd AdipocyteBreastD2+ bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward 1 1993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteBreastDonor2_CNhs11969_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF377YBQ ENCSR168KQC Peak bigBed 5 Middle frontal area 46 tissue female adult (84 years) CTCF peaks 4 1993 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/e1b72a66-6a98-4db0-b7e1-80c43c539577/ENCFF377YBQ.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (84 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168KQC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF377YBQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF978EHV ENCSR237QFJ Signal bigWig Small intestine tissue male embryo 108 days H3K4me3 signal 2 1993 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/dcb67b8c-3b9f-49e4-8e58-9ca45896e812/ENCFF978EHV.bigWig\ color 255,0,0\ longLabel Small intestine tissue male embryo 108 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR237QFJ Signal\ track wgEncodeReg4Epigenetics_ENCFF978EHV\ type bigWig\ visibility full\ AdipocyteBreastDonor2_CNhs11969_ctss_rev AdipocyteBreastD2- bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse 0 1994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor2_CNhs11969_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ AdipocyteBreastDonor2_CNhs11969_tpm_rev AdipocyteBreastD2- bigWig Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse 1 1994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20breast%2c%20donor2.CNhs11969.11327-117E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - breast, donor2_CNhs11969_11327-117E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11327-117E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteBreastDonor2_CNhs11969_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11327-117E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF741DPN ENCSR168KQC Signal bigWig Middle frontal area 46 tissue female adult (84 years) CTCF ENCSR168KQC signal 2 1994 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/789de22d-c65e-4f1e-b703-2a943ce50f8a/ENCFF741DPN.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (84 years) CTCF ENCSR168KQC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168KQC Signal\ track wgEncodeReg4TfChip_ENCFF741DPN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF528LMX ENCSR238FMP Peak bigBed 5 Heart right ventricle tissue male adult 40 years DNase peak 4 1994 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/26f0d1fa-cf03-46a1-babe-e3b9441da599/ENCFF528LMX.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR238FMP Peak\ track wgEncodeReg4Epigenetics_ENCFF528LMX\ type bigBed 5\ visibility squish\ AdipocyteOmentalDonor1_CNhs11054_ctss_fwd AdipocyteOmentalD1+ bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward 0 1995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor1_CNhs11054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_tpm_fwd AdipocyteOmentalD1+ bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward 1 1995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor1_CNhs11054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF565JGD ENCSR168SMX Peak bigBed 5 Liver tissue female child (4 years) NR2F2 peaks 4 1995 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/2bb96b36-5e9e-4476-9cd7-03706b7afa16/ENCFF565JGD.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) NR2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168SMX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF565JGD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF407UXA ENCSR238FMP Signal bigWig Heart right ventricle tissue male adult 40 years DNase signal 2 1995 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/3335eecc-1b54-4de1-bb70-1ade6b63de73/ENCFF407UXA.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR238FMP Signal\ track wgEncodeReg4Epigenetics_ENCFF407UXA\ type bigWig\ visibility full\ AdipocyteOmentalDonor1_CNhs11054_ctss_rev AdipocyteOmentalD1- bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse 0 1996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor1_CNhs11054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor1_CNhs11054_tpm_rev AdipocyteOmentalD1- bigWig Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse 1 1996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor1.CNhs11054.11473-119C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor1_CNhs11054_11473-119C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11473-119C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor1_CNhs11054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11473-119C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF067EQX ENCSR168SMX Signal bigWig Liver tissue female child (4 years) NR2F2 ENCSR168SMX signal 2 1996 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/d986cfc7-083a-44f1-a800-d5361a6ae32b/ENCFF067EQX.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) NR2F2 ENCSR168SMX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR168SMX Signal\ track wgEncodeReg4TfChip_ENCFF067EQX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF509BSA ENCSR238LEG Peak bigBed 5 Skeletal muscle tissue tissue H3K4me3 peak 4 1996 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/cf53d7e7-779a-4c1d-88e8-b3cea8901eea/ENCFF509BSA.bigBed\ color 255,0,0\ longLabel Skeletal muscle tissue tissue H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR238LEG Peak\ track wgEncodeReg4Epigenetics_ENCFF509BSA\ type bigBed 5\ visibility squish\ AdipocyteOmentalDonor2_CNhs12067_ctss_fwd AdipocyteOmentalD2+ bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward 0 1997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor2_CNhs12067_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_tpm_fwd AdipocyteOmentalD2+ bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward 1 1997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor2_CNhs12067_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF159KVX ENCSR169JRW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN20 ZSCAN20 peaks 4 1997 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/1f9b4afa-a3c1-402e-ab39-1fd67aa900a6/ENCFF159KVX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN20 ZSCAN20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR169JRW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF159KVX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF038ZQI ENCSR238LEG Signal bigWig Skeletal muscle tissue tissue H3K4me3 signal 2 1997 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6c15698b-292f-4270-9515-ceb0ccb12198/ENCFF038ZQI.bigWig\ color 255,0,0\ longLabel Skeletal muscle tissue tissue H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR238LEG Signal\ track wgEncodeReg4Epigenetics_ENCFF038ZQI\ type bigWig\ visibility full\ AdipocyteOmentalDonor2_CNhs12067_ctss_rev AdipocyteOmentalD2- bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse 0 1998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor2_CNhs12067_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor2_CNhs12067_tpm_rev AdipocyteOmentalD2- bigWig Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse 1 1998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor2.CNhs12067.11474-119C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor2_CNhs12067_11474-119C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11474-119C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor2_CNhs12067_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11474-119C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF277SAB ENCSR169JRW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN20 ZSCAN20 ENCSR169JRW signal 2 1998 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/3b2e7efb-52fa-40d4-9426-052c3bb7fe0f/ENCFF277SAB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN20 ZSCAN20 ENCSR169JRW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR169JRW Signal\ track wgEncodeReg4TfChip_ENCFF277SAB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF098LZT ENCSR238VHV Peak bigBed 5 Fallopian tube tissue female adult 46 years ATAC peak 4 1998 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/2cbe0ca6-7929-4dcc-aa10-142b317b6850/ENCFF098LZT.bigBed\ color 2,199,185\ longLabel Fallopian tube tissue female adult 46 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR238VHV Peak\ track wgEncodeReg4Epigenetics_ENCFF098LZT\ type bigBed 5\ visibility squish\ AdipocyteOmentalDonor3_CNhs12068_ctss_fwd AdipocyteOmentalD3+ bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward 0 1999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor3_CNhs12068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_tpm_fwd AdipocyteOmentalD3+ bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward 1 1999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteOmentalDonor3_CNhs12068_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF882ISP ENCSR170AMG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1 FOXC1 peaks 4 1999 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/358ce58b-54df-4bd3-885e-076c3069ccf1/ENCFF882ISP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1 FOXC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR170AMG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF882ISP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF953QDG ENCSR239MQN Peak bigBed 5 Head of caudate nucleus tissue female adult 82 years DNase peak 4 1999 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/b5f463fb-cf2f-48f1-86dc-ce953948f663/ENCFF953QDG.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR239MQN Peak\ track wgEncodeReg4Epigenetics_ENCFF953QDG\ type bigBed 5\ visibility squish\ AdipocyteOmentalDonor3_CNhs12068_ctss_rev AdipocyteOmentalD3- bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse 0 2000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor3_CNhs12068_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ AdipocyteOmentalDonor3_CNhs12068_tpm_rev AdipocyteOmentalD3- bigWig Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse 1 2000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20omental%2c%20donor3.CNhs12068.11475-119C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - omental, donor3_CNhs12068_11475-119C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11475-119C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteOmentalDonor3_CNhs12068_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11475-119C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF902EPM ENCSR170AMG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1 FOXC1 ENCSR170AMG signal 2 2000 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/98ad14f3-bbee-48f9-8442-91ebdc169923/ENCFF902EPM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1 FOXC1 ENCSR170AMG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR170AMG Signal\ track wgEncodeReg4TfChip_ENCFF902EPM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF298BKQ ENCSR239MQN Signal bigWig Head of caudate nucleus tissue female adult 82 years DNase signal 2 2000 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/48af3d87-1841-45bd-b9de-d88a9700e4a1/ENCFF298BKQ.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR239MQN Signal\ track wgEncodeReg4Epigenetics_ENCFF298BKQ\ type bigWig\ visibility full\ AdipocytePerirenalDonor1_CNhs12069_ctss_fwd AdipocytePerirenalD1+ bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward 0 2001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocytePerirenalDonor1_CNhs12069_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_tpm_fwd AdipocytePerirenalD1+ bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward 1 2001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocytePerirenalDonor1_CNhs12069_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF840PXT ENCSR170NMC Peak bigBed 5 Transverse colon tissue female adult (51 years) POLR2AphosphoS5 peaks 4 2001 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/c4be7372-3abf-4eeb-9e24-e19f36e39237/ENCFF840PXT.bigBed\ labelFields none\ longLabel Transverse colon tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR170NMC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF840PXT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF204VOA ENCSR239XNU Peak bigBed 5 CD4-positive, alpha-beta memory T cell male adult 43 years DNase peak 4 2001 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/59b1ebb6-296a-4d02-b96f-bfe6636c3616/ENCFF204VOA.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta memory T cell male adult 43 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR239XNU Peak\ track wgEncodeReg4Epigenetics_ENCFF204VOA\ type bigBed 5\ visibility squish\ AdipocytePerirenalDonor1_CNhs12069_ctss_rev AdipocytePerirenalD1- bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse 0 2002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocytePerirenalDonor1_CNhs12069_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ AdipocytePerirenalDonor1_CNhs12069_tpm_rev AdipocytePerirenalD1- bigWig Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse 1 2002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20perirenal%2c%20donor1.CNhs12069.11476-119C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - perirenal, donor1_CNhs12069_11476-119C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11476-119C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocytePerirenalDonor1_CNhs12069_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11476-119C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF543LPM ENCSR170NMC Signal bigWig Transverse colon tissue female adult (51 years) POLR2AphosphoS5 ENCSR170NMC signal 2 2002 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/ae9db675-fe17-4f40-87ae-fd48de5d68dd/ENCFF543LPM.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (51 years) POLR2AphosphoS5 ENCSR170NMC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR170NMC Signal\ track wgEncodeReg4TfChip_ENCFF543LPM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF520YEZ ENCSR239XNU Signal bigWig CD4-positive, alpha-beta memory T cell male adult 43 years DNase signal 2 2002 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/dcb73273-79bd-442a-b767-182746b58264/ENCFF520YEZ.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta memory T cell male adult 43 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR239XNU Signal\ track wgEncodeReg4Epigenetics_ENCFF520YEZ\ type bigWig\ visibility full\ AdipocyteSubcutaneousDonor1_CNhs12494_ctss_fwd AdipocyteSubcutaneousD1+ bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward 0 2003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor1_CNhs12494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_tpm_fwd AdipocyteSubcutaneousD1+ bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward 1 2003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor1_CNhs12494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF681YNN ENCSR171BKT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674 ZNF674 peaks 4 2003 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/3b822c7b-4dc5-40f5-87e0-01393972d883/ENCFF681YNN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674 ZNF674 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171BKT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF681YNN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF094RUY ENCSR240GDT Peak bigBed 5 Heart right ventricle tissue female adult 46 years H3K27ac peak 4 2003 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/9283361b-d442-4cbf-ae46-3858bf13694b/ENCFF094RUY.bigBed\ color 181,145,0\ longLabel Heart right ventricle tissue female adult 46 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR240GDT Peak\ track wgEncodeReg4Epigenetics_ENCFF094RUY\ type bigBed 5\ visibility squish\ AdipocyteSubcutaneousDonor1_CNhs12494_ctss_rev AdipocyteSubcutaneousD1- bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse 0 2004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor1_CNhs12494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor1_CNhs12494_tpm_rev AdipocyteSubcutaneousD1- bigWig Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse 1 2004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor1.CNhs12494.11259-116F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor1_CNhs12494_11259-116F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11259-116F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor1_CNhs12494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11259-116F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF553KCM ENCSR171BKT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674 ZNF674 ENCSR171BKT signal 2 2004 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b473c0ef-5e79-451f-8f92-f526fba8d511/ENCFF553KCM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674 ZNF674 ENCSR171BKT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171BKT Signal\ track wgEncodeReg4TfChip_ENCFF553KCM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF406YGS ENCSR240GDT Signal bigWig Heart right ventricle tissue female adult 46 years H3K27ac signal 2 2004 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/5da9fb69-f7a8-46e2-93e5-11522b69a7bd/ENCFF406YGS.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue female adult 46 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR240GDT Signal\ track wgEncodeReg4Epigenetics_ENCFF406YGS\ type bigWig\ visibility full\ AdipocyteSubcutaneousDonor2_CNhs11371_ctss_fwd AdipocyteSubcutaneousD2+ bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward 0 2005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor2_CNhs11371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_tpm_fwd AdipocyteSubcutaneousD2+ bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward 1 2005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor2_CNhs11371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF212JSU ENCSR171CAY Peak bigBed 5 K562 E2F7 peaks 4 2005 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/883c70c1-41e5-4212-a06f-ce0b1851b001/ENCFF212JSU.bigBed\ labelFields none\ longLabel K562 E2F7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171CAY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF212JSU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF579RBC ENCSR240TPI Peak bigBed 5 ELR DNase peak 4 2005 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b03b59e0-7b43-4e76-8b69-66998549aa5b/ENCFF579RBC.bigBed\ color 6,218,147\ labelFields none\ longLabel ELR DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR240TPI Peak\ track wgEncodeReg4Epigenetics_ENCFF579RBC\ type bigBed 5\ visibility squish\ AdipocyteSubcutaneousDonor2_CNhs11371_ctss_rev AdipocyteSubcutaneousD2- bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse 0 2006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor2_CNhs11371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor2_CNhs11371_tpm_rev AdipocyteSubcutaneousD2- bigWig Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse 1 2006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor2.CNhs11371.11336-117F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor2_CNhs11371_11336-117F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11336-117F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor2_CNhs11371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11336-117F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF979YTG ENCSR171CAY Signal bigWig K562 E2F7 ENCSR171CAY signal 2 2006 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/f3017ae3-b1e2-4d14-b7ea-8d5017ace6a0/ENCFF979YTG.bigWig\ color 254,75,173\ longLabel K562 E2F7 ENCSR171CAY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171CAY Signal\ track wgEncodeReg4TfChip_ENCFF979YTG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF231PXF ENCSR240TPI Signal bigWig ELR DNase signal 2 2006 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/d13d81b5-b014-4fdb-9447-0ef9098f5674/ENCFF231PXF.bigWig\ color 6,218,147\ longLabel ELR DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR240TPI Signal\ track wgEncodeReg4Epigenetics_ENCFF231PXF\ type bigWig\ visibility full\ AdipocyteSubcutaneousDonor3_CNhs12017_ctss_fwd AdipocyteSubcutaneousD3+ bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward 0 2007 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor3_CNhs12017_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_tpm_fwd AdipocyteSubcutaneousD3+ bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward 1 2007 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AdipocyteSubcutaneousDonor3_CNhs12017_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF068YAS ENCSR171FUX Peak bigBed 5 HepG2 FOXK2 peaks 4 2007 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/c6686d8b-c549-4115-8b52-87e38f3eeebe/ENCFF068YAS.bigBed\ labelFields none\ longLabel HepG2 FOXK2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171FUX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF068YAS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF429YGJ ENCSR241BNZ Peak bigBed 5 CD14-positive monocyte male adult 30 years DNase peak 4 2007 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/73f97806-1916-4f36-a3bd-0f9086f33c0f/ENCFF429YGJ.bigBed\ color 6,218,147\ labelFields none\ longLabel CD14-positive monocyte male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR241BNZ Peak\ track wgEncodeReg4Epigenetics_ENCFF429YGJ\ type bigBed 5\ visibility squish\ AdipocyteSubcutaneousDonor3_CNhs12017_ctss_rev AdipocyteSubcutaneousD3- bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse 0 2008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor3_CNhs12017_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ AdipocyteSubcutaneousDonor3_CNhs12017_tpm_rev AdipocyteSubcutaneousD3- bigWig Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse 1 2008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Adipocyte%20-%20subcutaneous%2c%20donor3.CNhs12017.11408-118E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Adipocyte - subcutaneous, donor3_CNhs12017_11408-118E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11408-118E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AdipocyteSubcutaneousDonor3_CNhs12017_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11408-118E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF315IGY ENCSR171FUX Signal bigWig HepG2 FOXK2 ENCSR171FUX signal 2 2008 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/6b3c5674-8fe2-41b2-b935-b489dcf2ebf9/ENCFF315IGY.bigWig\ color 137,152,82\ longLabel HepG2 FOXK2 ENCSR171FUX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171FUX Signal\ track wgEncodeReg4TfChip_ENCFF315IGY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF334MJA ENCSR241BNZ Signal bigWig CD14-positive monocyte male adult 30 years DNase signal 2 2008 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/df6af8be-966d-4ad4-831f-b58af0be50a2/ENCFF334MJA.bigWig\ color 6,218,147\ longLabel CD14-positive monocyte male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR241BNZ Signal\ track wgEncodeReg4Epigenetics_ENCFF334MJA\ type bigWig\ visibility full\ AlveolarEpithelialCellsDonor1_CNhs11325_ctss_fwd AlveolarEpithelialCellsD1+ bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward 0 2009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor1_CNhs11325_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor1_CNhs11325_tpm_fwd AlveolarEpithelialCellsD1+ bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward 1 2009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor1_CNhs11325_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF470YPH ENCSR171KUL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF513 ZNF513 peaks 4 2009 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/e017fc25-8d65-4ab9-96d9-79f6b4912ab0/ENCFF470YPH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF513 ZNF513 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171KUL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF470YPH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF351HBR ENCSR241OBO Peak bigBed 5 Adrenal gland tissue female adult 59 years ATAC peak 4 2009 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/6268b013-6150-4ade-a271-ed9718aa05f9/ENCFF351HBR.bigBed\ color 2,199,185\ longLabel Adrenal gland tissue female adult 59 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR241OBO Peak\ track wgEncodeReg4Epigenetics_ENCFF351HBR\ type bigBed 5\ visibility squish\ AlveolarEpithelialCellsDonor1_CNhs11325_ctss_rev AlveolarEpithelialCellsD1- bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse 0 2010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor1_CNhs11325_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor1_CNhs11325_tpm_rev AlveolarEpithelialCellsD1- bigWig Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse 1 2010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor1.CNhs11325.11510-119G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor1_CNhs11325_11510-119G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11510-119G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor1_CNhs11325_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11510-119G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF618HPY ENCSR171KUL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF513 ZNF513 ENCSR171KUL signal 2 2010 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/e410eff3-e966-40e2-a69e-f0086c58ebe0/ENCFF618HPY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF513 ZNF513 ENCSR171KUL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171KUL Signal\ track wgEncodeReg4TfChip_ENCFF618HPY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF404IAG ENCSR241OBO Signal bigWig Adrenal gland tissue female adult 59 years ATAC signal 2 2010 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/c702fd27-4304-49b1-8386-23b65b3d4c9a/ENCFF404IAG.bigWig\ color 2,199,185\ longLabel Adrenal gland tissue female adult 59 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR241OBO Signal\ track wgEncodeReg4Epigenetics_ENCFF404IAG\ type bigWig\ visibility full\ AlveolarEpithelialCellsDonor2_CNhs12084_ctss_fwd AlveolarEpithelialCellsD2+ bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward 0 2011 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor2_CNhs12084_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor2_CNhs12084_tpm_fwd AlveolarEpithelialCellsD2+ bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward 1 2011 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor2_CNhs12084_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF352AOI ENCSR171TDM Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens EHF EHF peaks 4 2011 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/4ffcad0c-76c0-495d-a197-6117872cfd53/ENCFF352AOI.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens EHF EHF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171TDM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF352AOI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF529QLX ENCSR241VGH Peak bigBed 5 GM18502 ATAC peak 4 2011 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/d620f4d8-8cc1-4782-bc2a-e97336d1c000/ENCFF529QLX.bigBed\ color 2,199,185\ longLabel GM18502 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR241VGH Peak\ track wgEncodeReg4Epigenetics_ENCFF529QLX\ type bigBed 5\ visibility squish\ AlveolarEpithelialCellsDonor2_CNhs12084_ctss_rev AlveolarEpithelialCellsD2- bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse 0 2012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor2_CNhs12084_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor2_CNhs12084_tpm_rev AlveolarEpithelialCellsD2- bigWig Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse 1 2012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor2.CNhs12084.11590-120G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor2_CNhs12084_11590-120G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11590-120G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor2_CNhs12084_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11590-120G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF577TLG ENCSR171TDM Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens EHF EHF ENCSR171TDM signal 2 2012 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/f907924a-6182-4cd4-bae0-fa3c0761c143/ENCFF577TLG.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens EHF EHF ENCSR171TDM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR171TDM Signal\ track wgEncodeReg4TfChip_ENCFF577TLG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF241EBE ENCSR241VGH Signal bigWig GM18502 ATAC signal 2 2012 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/60cd37d2-2579-49ab-be2e-13ef11f8a483/ENCFF241EBE.bigWig\ color 2,199,185\ longLabel GM18502 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR241VGH Signal\ track wgEncodeReg4Epigenetics_ENCFF241EBE\ type bigWig\ visibility full\ AlveolarEpithelialCellsDonor3_CNhs12119_ctss_fwd AlveolarEpithelialCellsD3+ bigWig Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward 0 2013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor3.CNhs12119.11671-122G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11671-122G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor3_CNhs12119_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor3_CNhs12119_tpm_fwd AlveolarEpithelialCellsD3+ bigWig Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward 1 2013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor3.CNhs12119.11671-122G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11671-122G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AlveolarEpithelialCellsDonor3_CNhs12119_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF933CVM ENCSR172OSX Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB12 ZBTB12 peaks 4 2013 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/b861d07e-7405-4cc9-9746-ea0087c93077/ENCFF933CVM.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB12 ZBTB12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR172OSX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF933CVM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF893IGA ENCSR242AHB Peak bigBed 5 Ovary tissue female adult 51 years H3K27ac peak 4 2013 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f5c81740-7398-4464-8d2d-86c38da8ddc4/ENCFF893IGA.bigBed\ color 181,145,0\ longLabel Ovary tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR242AHB Peak\ track wgEncodeReg4Epigenetics_ENCFF893IGA\ type bigBed 5\ visibility squish\ AlveolarEpithelialCellsDonor3_CNhs12119_ctss_rev AlveolarEpithelialCellsD3- bigWig Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_reverse 0 2014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor3.CNhs12119.11671-122G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11671-122G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AlveolarEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor3_CNhs12119_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6\ urlLabel FANTOM5 Details:\ AlveolarEpithelialCellsDonor3_CNhs12119_tpm_rev AlveolarEpithelialCellsD3- bigWig Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_reverse 1 2014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Alveolar%20Epithelial%20Cells%2c%20donor3.CNhs12119.11671-122G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Alveolar Epithelial Cells, donor3_CNhs12119_11671-122G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11671-122G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AlveolarEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AlveolarEpithelialCellsDonor3_CNhs12119_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11671-122G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF402KJP ENCSR172OSX Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB12 ZBTB12 ENCSR172OSX signal 2 2014 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/8c1a8d39-7cb2-4403-81dc-2831a0d694de/ENCFF402KJP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB12 ZBTB12 ENCSR172OSX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR172OSX Signal\ track wgEncodeReg4TfChip_ENCFF402KJP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF920RTP ENCSR242AHB Signal bigWig Ovary tissue female adult 51 years H3K27ac signal 2 2014 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c0eec07f-c506-4977-a438-adea5e12c2cb/ENCFF920RTP.bigWig\ color 181,145,0\ longLabel Ovary tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR242AHB Signal\ track wgEncodeReg4Epigenetics_ENCFF920RTP\ type bigWig\ visibility full\ AmnioticEpithelialCellsDonor1_CNhs11341_ctss_fwd AmnioticEpithelialCellsD1+ bigWig Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_forward 0 2015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor1.CNhs11341.11533-120A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11533-120A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticEpithelialCellsDonor1_CNhs11341_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor1_CNhs11341_tpm_fwd AmnioticEpithelialCellsD1+ bigWig Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_forward 1 2015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor1.CNhs11341.11533-120A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11533-120A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticEpithelialCellsDonor1_CNhs11341_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF039BMN ENCSR172XJS Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF165 ZNF165 peaks 4 2015 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/d979d06e-e268-46f1-9caa-e2f929e73b56/ENCFF039BMN.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF165 ZNF165 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR172XJS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF039BMN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF937BNU ENCSR242CLA Peak bigBed 5 Activated regulatory T cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak 4 2015 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/e1d021bb-818e-4557-8fa6-c606cdd30c96/ENCFF937BNU.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated regulatory T cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR242CLA Peak\ track wgEncodeReg4Epigenetics_ENCFF937BNU\ type bigBed 5\ visibility squish\ AmnioticEpithelialCellsDonor1_CNhs11341_ctss_rev AmnioticEpithelialCellsD1- bigWig Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_reverse 0 2016 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor1.CNhs11341.11533-120A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11533-120A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticEpithelialCellsDonor1_CNhs11341_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor1_CNhs11341_tpm_rev AmnioticEpithelialCellsD1- bigWig Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_reverse 1 2016 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor1.CNhs11341.11533-120A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Amniotic Epithelial Cells, donor1_CNhs11341_11533-120A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11533-120A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticEpithelialCellsDonor1_CNhs11341_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11533-120A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF108DNB ENCSR172XJS Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF165 ZNF165 ENCSR172XJS signal 2 2016 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/23f4af9e-039a-464d-a621-3fcb806a1584/ENCFF108DNB.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF165 ZNF165 ENCSR172XJS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR172XJS Signal\ track wgEncodeReg4TfChip_ENCFF108DNB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF594BXK ENCSR242CLA Signal bigWig Activated regulatory T cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal 2 2016 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/ea948034-577f-4772-a566-30febe3fbd26/ENCFF594BXK.bigWig\ color 6,218,147\ longLabel Activated regulatory T cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR242CLA Signal\ track wgEncodeReg4Epigenetics_ENCFF594BXK\ type bigWig\ visibility full\ AmnioticEpithelialCellsDonor2_CNhs12098_ctss_fwd AmnioticEpithelialCellsD2+ bigWig Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_forward 0 2017 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor2.CNhs12098.11613-122A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11613-122A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticEpithelialCellsDonor2_CNhs12098_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor2_CNhs12098_tpm_fwd AmnioticEpithelialCellsD2+ bigWig Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_forward 1 2017 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor2.CNhs12098.11613-122A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11613-122A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticEpithelialCellsDonor2_CNhs12098_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF370OWL ENCSR173AIR Peak bigBed 5 Stomach tissue female adult (51 years) CTCF peaks 4 2017 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/984d60eb-6f6b-4649-b422-68d5f738229e/ENCFF370OWL.bigBed\ labelFields none\ longLabel Stomach tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173AIR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF370OWL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF553KCH ENCSR242RPQ Peak bigBed 5 Pancreas tissue female child 16 years DNase peak 4 2017 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/85b47af7-237e-4c57-bbcf-f9ac734fac82/ENCFF553KCH.bigBed\ color 6,218,147\ labelFields none\ longLabel Pancreas tissue female child 16 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR242RPQ Peak\ track wgEncodeReg4Epigenetics_ENCFF553KCH\ type bigBed 5\ visibility squish\ AmnioticEpithelialCellsDonor2_CNhs12098_ctss_rev AmnioticEpithelialCellsD2- bigWig Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_reverse 0 2018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor2.CNhs12098.11613-122A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11613-122A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticEpithelialCellsDonor2_CNhs12098_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor2_CNhs12098_tpm_rev AmnioticEpithelialCellsD2- bigWig Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_reverse 1 2018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor2.CNhs12098.11613-122A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Amniotic Epithelial Cells, donor2_CNhs12098_11613-122A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11613-122A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticEpithelialCellsDonor2_CNhs12098_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11613-122A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF899XIQ ENCSR173AIR Signal bigWig Stomach tissue female adult (51 years) CTCF ENCSR173AIR signal 2 2018 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/facc9091-5909-4989-a8dc-30a4a917aae9/ENCFF899XIQ.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (51 years) CTCF ENCSR173AIR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173AIR Signal\ track wgEncodeReg4TfChip_ENCFF899XIQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF349ZMO ENCSR242RPQ Signal bigWig Pancreas tissue female child 16 years DNase signal 2 2018 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/a3576bb0-cef2-4f8c-adfd-43e08895a3d9/ENCFF349ZMO.bigWig\ color 6,218,147\ longLabel Pancreas tissue female child 16 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR242RPQ Signal\ track wgEncodeReg4Epigenetics_ENCFF349ZMO\ type bigWig\ visibility full\ AmnioticEpithelialCellsDonor3_CNhs12125_ctss_fwd AmnioticEpithelialCellsD3+ bigWig Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_forward 0 2019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor3.CNhs12125.11694-123A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11694-123A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticEpithelialCellsDonor3_CNhs12125_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor3_CNhs12125_tpm_fwd AmnioticEpithelialCellsD3+ bigWig Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_forward 1 2019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor3.CNhs12125.11694-123A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11694-123A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticEpithelialCellsDonor3_CNhs12125_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF943KSI ENCSR173CTF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580 ZNF580 peaks 4 2019 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ea8bc0de-38ae-4f83-8f09-ff62c8e57ef4/ENCFF943KSI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580 ZNF580 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173CTF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF943KSI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF942YMO ENCSR243BXK Peak bigBed 5 K562 treated with 5 μM JQ1 for 24 hours ATAC peak 4 2019 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/6e26389d-52d5-4aa4-9111-c1e390605a54/ENCFF942YMO.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM JQ1 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR243BXK Peak\ track wgEncodeReg4Epigenetics_ENCFF942YMO\ type bigBed 5\ visibility squish\ AmnioticEpithelialCellsDonor3_CNhs12125_ctss_rev AmnioticEpithelialCellsD3- bigWig Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_reverse 0 2020 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor3.CNhs12125.11694-123A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11694-123A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticEpithelialCellsDonor3_CNhs12125_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2\ urlLabel FANTOM5 Details:\ AmnioticEpithelialCellsDonor3_CNhs12125_tpm_rev AmnioticEpithelialCellsD3- bigWig Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_reverse 1 2020 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Amniotic%20Epithelial%20Cells%2c%20donor3.CNhs12125.11694-123A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Amniotic Epithelial Cells, donor3_CNhs12125_11694-123A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11694-123A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticEpithelialCellsDonor3_CNhs12125_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11694-123A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF489DAX ENCSR173CTF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580 ZNF580 ENCSR173CTF signal 2 2020 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/7c7f4e02-fc60-40b0-89c8-9a1d89cf80f5/ENCFF489DAX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580 ZNF580 ENCSR173CTF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173CTF Signal\ track wgEncodeReg4TfChip_ENCFF489DAX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF177WRC ENCSR243BXK Signal bigWig K562 treated with 5 μM JQ1 for 24 hours ATAC signal 2 2020 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/050da4f4-a040-42fe-84e5-6aa8d5971f07/ENCFF177WRC.bigWig\ color 2,199,185\ longLabel K562 treated with 5 μM JQ1 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR243BXK Signal\ track wgEncodeReg4Epigenetics_ENCFF177WRC\ type bigWig\ visibility full\ AmnioticMembraneCellsDonor1_CNhs12502_ctss_fwd AmnioticMembraneCellsD1+ bigWig amniotic membrane cells, donor1_CNhs12502_12235-129G3_forward 0 2021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor1.CNhs12502.12235-129G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amniotic membrane cells, donor1_CNhs12502_12235-129G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12235-129G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticMembraneCellsDonor1_CNhs12502_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3\ urlLabel FANTOM5 Details:\ AmnioticMembraneCellsDonor1_CNhs12502_tpm_fwd AmnioticMembraneCellsD1+ bigWig amniotic membrane cells, donor1_CNhs12502_12235-129G3_forward 1 2021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor1.CNhs12502.12235-129G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amniotic membrane cells, donor1_CNhs12502_12235-129G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12235-129G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticMembraneCellsDonor1_CNhs12502_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF356UIO ENCSR173NAL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598 ZNF598 peaks 4 2021 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/f4b3a7f5-5e08-4c9f-9165-f81b67ecf041/ENCFF356UIO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598 ZNF598 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173NAL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF356UIO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF539ULB ENCSR243INX Peak bigBed 5 PC-9 CTCF peak 4 2021 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/e3022cc6-fc15-43bc-896e-eb5a8de860b3/ENCFF539ULB.bigBed\ color 0,176,240\ labelFields none\ longLabel PC-9 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR243INX Peak\ track wgEncodeReg4Epigenetics_ENCFF539ULB\ type bigBed 5\ visibility squish\ AmnioticMembraneCellsDonor1_CNhs12502_ctss_rev AmnioticMembraneCellsD1- bigWig amniotic membrane cells, donor1_CNhs12502_12235-129G3_reverse 0 2022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor1.CNhs12502.12235-129G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amniotic membrane cells, donor1_CNhs12502_12235-129G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12235-129G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticMembraneCellsDonor1_CNhs12502_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3\ urlLabel FANTOM5 Details:\ AmnioticMembraneCellsDonor1_CNhs12502_tpm_rev AmnioticMembraneCellsD1- bigWig amniotic membrane cells, donor1_CNhs12502_12235-129G3_reverse 1 2022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor1.CNhs12502.12235-129G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amniotic membrane cells, donor1_CNhs12502_12235-129G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12235-129G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticMembraneCellsDonor1_CNhs12502_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12235-129G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF004GTR ENCSR173NAL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598 ZNF598 ENCSR173NAL signal 2 2022 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/6bd3ba98-58ce-426f-b8b3-c67ab4ae7f46/ENCFF004GTR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598 ZNF598 ENCSR173NAL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173NAL Signal\ track wgEncodeReg4TfChip_ENCFF004GTR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF936QRH ENCSR243INX Signal bigWig PC-9 CTCF signal 2 2022 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/48edea85-4c5b-49d2-aa57-fa3196e6d745/ENCFF936QRH.bigWig\ color 0,176,240\ longLabel PC-9 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR243INX Signal\ track wgEncodeReg4Epigenetics_ENCFF936QRH\ type bigWig\ visibility full\ AmnioticMembraneCellsDonor2_CNhs12503_ctss_fwd AmnioticMembraneCellsD2+ bigWig amniotic membrane cells, donor2_CNhs12503_12236-129G4_forward 0 2023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor2.CNhs12503.12236-129G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amniotic membrane cells, donor2_CNhs12503_12236-129G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12236-129G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticMembraneCellsDonor2_CNhs12503_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4\ urlLabel FANTOM5 Details:\ AmnioticMembraneCellsDonor2_CNhs12503_tpm_fwd AmnioticMembraneCellsD2+ bigWig amniotic membrane cells, donor2_CNhs12503_12236-129G4_forward 1 2023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor2.CNhs12503.12236-129G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amniotic membrane cells, donor2_CNhs12503_12236-129G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12236-129G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticMembraneCellsDonor2_CNhs12503_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF487RQI ENCSR173USN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43 ZBTB43 peaks 4 2023 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/8cff9dbd-f24d-4084-9b5c-68bdfffeed57/ENCFF487RQI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43 ZBTB43 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173USN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF487RQI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF354RKX ENCSR244KEW Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 88 years CTCF peak 4 2023 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/8d22788a-a485-4931-9e8e-b4b8c0adbd30/ENCFF354RKX.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 88 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR244KEW Peak\ track wgEncodeReg4Epigenetics_ENCFF354RKX\ type bigBed 5\ visibility squish\ AmnioticMembraneCellsDonor2_CNhs12503_ctss_rev AmnioticMembraneCellsD2- bigWig amniotic membrane cells, donor2_CNhs12503_12236-129G4_reverse 0 2024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor2.CNhs12503.12236-129G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amniotic membrane cells, donor2_CNhs12503_12236-129G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12236-129G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticMembraneCellsDonor2_CNhs12503_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4\ urlLabel FANTOM5 Details:\ AmnioticMembraneCellsDonor2_CNhs12503_tpm_rev AmnioticMembraneCellsD2- bigWig amniotic membrane cells, donor2_CNhs12503_12236-129G4_reverse 1 2024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor2.CNhs12503.12236-129G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amniotic membrane cells, donor2_CNhs12503_12236-129G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12236-129G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticMembraneCellsDonor2_CNhs12503_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12236-129G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF326JKI ENCSR173USN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43 ZBTB43 ENCSR173USN signal 2 2024 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/7d491d58-463a-483c-b56d-0b49106b7728/ENCFF326JKI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43 ZBTB43 ENCSR173USN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173USN Signal\ track wgEncodeReg4TfChip_ENCFF326JKI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF072ETP ENCSR244KEW Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 88 years CTCF signal 2 2024 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/e35079a8-65c9-43b2-88c5-e36bc0830bc6/ENCFF072ETP.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 88 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR244KEW Signal\ track wgEncodeReg4Epigenetics_ENCFF072ETP\ type bigWig\ visibility full\ AmnioticMembraneCellsDonor3_CNhs12379_ctss_fwd AmnioticMembraneCellsD3+ bigWig amniotic membrane cells, donor3_CNhs12379_12237-129G5_forward 0 2025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor3.CNhs12379.12237-129G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amniotic membrane cells, donor3_CNhs12379_12237-129G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12237-129G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticMembraneCellsDonor3_CNhs12379_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5\ urlLabel FANTOM5 Details:\ AmnioticMembraneCellsDonor3_CNhs12379_tpm_fwd AmnioticMembraneCellsD3+ bigWig amniotic membrane cells, donor3_CNhs12379_12237-129G5_forward 1 2025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor3.CNhs12379.12237-129G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amniotic membrane cells, donor3_CNhs12379_12237-129G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12237-129G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AmnioticMembraneCellsDonor3_CNhs12379_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF818ABS ENCSR173ZVL Peak bigBed 5 GM12878 ZNF592 peaks 4 2025 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e5852aff-0e47-4d5c-9f80-039182e5be46/ENCFF818ABS.bigBed\ labelFields none\ longLabel GM12878 ZNF592 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173ZVL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF818ABS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF808GKL ENCSR245AXW Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase peak 4 2025 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/b4a1fd82-caa4-4cb5-8da0-5b1bc8c92b48/ENCFF808GKL.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245AXW Peak\ track wgEncodeReg4Epigenetics_ENCFF808GKL\ type bigBed 5\ visibility squish\ AmnioticMembraneCellsDonor3_CNhs12379_ctss_rev AmnioticMembraneCellsD3- bigWig amniotic membrane cells, donor3_CNhs12379_12237-129G5_reverse 0 2026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor3.CNhs12379.12237-129G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amniotic membrane cells, donor3_CNhs12379_12237-129G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12237-129G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmnioticMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticMembraneCellsDonor3_CNhs12379_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5\ urlLabel FANTOM5 Details:\ AmnioticMembraneCellsDonor3_CNhs12379_tpm_rev AmnioticMembraneCellsD3- bigWig amniotic membrane cells, donor3_CNhs12379_12237-129G5_reverse 1 2026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amniotic%20membrane%20cells%2c%20donor3.CNhs12379.12237-129G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amniotic membrane cells, donor3_CNhs12379_12237-129G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12237-129G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmnioticMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AmnioticMembraneCellsDonor3_CNhs12379_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12237-129G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF574SCI ENCSR173ZVL Signal bigWig GM12878 ZNF592 ENCSR173ZVL signal 2 2026 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/5a3db06b-9705-46eb-89be-3b1f8e54bc6e/ENCFF574SCI.bigWig\ color 254,75,173\ longLabel GM12878 ZNF592 ENCSR173ZVL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR173ZVL Signal\ track wgEncodeReg4TfChip_ENCFF574SCI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF959XPY ENCSR245AXW Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase signal 2 2026 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/5c6d9bde-dbe6-4f6e-bf72-2cff258c9ada/ENCFF959XPY.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245AXW Signal\ track wgEncodeReg4Epigenetics_ENCFF959XPY\ type bigWig\ visibility full\ AnulusPulposusCellDonor1_CNhs10876_ctss_fwd AnulusPulposusCellD1+ bigWig Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_forward 0 2027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor1.CNhs10876.11248-116E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11248-116E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AnulusPulposusCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AnulusPulposusCellDonor1_CNhs10876_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor1_CNhs10876_tpm_fwd AnulusPulposusCellD1+ bigWig Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_forward 1 2027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor1.CNhs10876.11248-116E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11248-116E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AnulusPulposusCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AnulusPulposusCellDonor1_CNhs10876_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF179TAD ENCSR174GOO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 peaks 4 2027 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3a228719-f7e3-48e5-9b78-e3fd25afe2cc/ENCFF179TAD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR174GOO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF179TAD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF211POS ENCSR245BEV Peak bigBed 5 Psoas muscle tissue male child 3 years H3K4me3 peak 4 2027 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9bce006a-3807-4de6-8357-214fdbf0c79d/ENCFF211POS.bigBed\ color 255,0,0\ longLabel Psoas muscle tissue male child 3 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245BEV Peak\ track wgEncodeReg4Epigenetics_ENCFF211POS\ type bigBed 5\ visibility squish\ AnulusPulposusCellDonor1_CNhs10876_ctss_rev AnulusPulposusCellD1- bigWig Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_reverse 0 2028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor1.CNhs10876.11248-116E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11248-116E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AnulusPulposusCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AnulusPulposusCellDonor1_CNhs10876_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor1_CNhs10876_tpm_rev AnulusPulposusCellD1- bigWig Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_reverse 1 2028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor1.CNhs10876.11248-116E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Anulus Pulposus Cell, donor1_CNhs10876_11248-116E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11248-116E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AnulusPulposusCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AnulusPulposusCellDonor1_CNhs10876_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11248-116E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF407DIL ENCSR174GOO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 ENCSR174GOO signal 2 2028 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/b5217137-d1e6-47ab-aa63-6165731b2939/ENCFF407DIL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 ENCSR174GOO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR174GOO Signal\ track wgEncodeReg4TfChip_ENCFF407DIL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF520CVN ENCSR245BEV Signal bigWig Psoas muscle tissue male child 3 years H3K4me3 signal 2 2028 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/03b84cbc-888e-4c14-867c-b3eecfeacbfb/ENCFF520CVN.bigWig\ color 255,0,0\ longLabel Psoas muscle tissue male child 3 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245BEV Signal\ track wgEncodeReg4Epigenetics_ENCFF520CVN\ type bigWig\ visibility full\ AnulusPulposusCellDonor2_CNhs12064_ctss_fwd AnulusPulposusCellD2+ bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward 0 2029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AnulusPulposusCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AnulusPulposusCellDonor2_CNhs12064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor2_CNhs12064_tpm_fwd AnulusPulposusCellD2+ bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward 1 2029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AnulusPulposusCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AnulusPulposusCellDonor2_CNhs12064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF058ULB ENCSR175BVD Peak bigBed 5 Lower leg skin tissue male adult (37 years) POLR2A peaks 4 2029 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a13c9e0f-e6c3-404a-bf1a-9b29ff80ddbc/ENCFF058ULB.bigBed\ labelFields none\ longLabel Lower leg skin tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175BVD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF058ULB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF022OQM ENCSR245GEV Peak bigBed 5 Pancreas tissue female adult 61 years H3K27ac peak 4 2029 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/f3a371e9-be1a-4a00-a45f-3031110bd504/ENCFF022OQM.bigBed\ color 181,145,0\ longLabel Pancreas tissue female adult 61 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245GEV Peak\ track wgEncodeReg4Epigenetics_ENCFF022OQM\ type bigBed 5\ visibility squish\ AnulusPulposusCellDonor2_CNhs12064_ctss_rev AnulusPulposusCellD2- bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse 0 2030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AnulusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AnulusPulposusCellDonor2_CNhs12064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ AnulusPulposusCellDonor2_CNhs12064_tpm_rev AnulusPulposusCellD2- bigWig Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse 1 2030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Anulus%20Pulposus%20Cell%2c%20donor2.CNhs12064.11463-119B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Anulus Pulposus Cell, donor2_CNhs12064_11463-119B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11463-119B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AnulusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AnulusPulposusCellDonor2_CNhs12064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11463-119B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF311YSI ENCSR175BVD Signal bigWig Lower leg skin tissue male adult (37 years) POLR2A ENCSR175BVD signal 2 2030 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/85b825fb-506e-4edc-b814-eb0c1da2722d/ENCFF311YSI.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue male adult (37 years) POLR2A ENCSR175BVD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175BVD Signal\ track wgEncodeReg4TfChip_ENCFF311YSI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF948MEI ENCSR245GEV Signal bigWig Pancreas tissue female adult 61 years H3K27ac signal 2 2030 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/0d867c6e-5ff9-4e50-a9a1-3667e06ac6de/ENCFF948MEI.bigWig\ color 181,145,0\ longLabel Pancreas tissue female adult 61 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245GEV Signal\ track wgEncodeReg4Epigenetics_ENCFF948MEI\ type bigWig\ visibility full\ AstrocyteCerebellumDonor1_CNhs11321_ctss_fwd AstrocyteCerebellumD1+ bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward 0 2031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor1_CNhs11321_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor1_CNhs11321_tpm_fwd AstrocyteCerebellumD1+ bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward 1 2031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor1_CNhs11321_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF053BWO ENCSR175EOM Peak bigBed 5 K562 EHMT2 peaks 4 2031 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/449877f9-f845-470f-b902-63d6e87c8f7e/ENCFF053BWO.bigBed\ labelFields none\ longLabel K562 EHMT2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175EOM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF053BWO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF104OLX ENCSR245HFY Peak bigBed 5 CD4-positive, alpha-beta memory T cell male adult 43 years H3K27ac peak 4 2031 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/691b4469-334d-4a5b-96d3-83ab9dd138bf/ENCFF104OLX.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell male adult 43 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245HFY Peak\ track wgEncodeReg4Epigenetics_ENCFF104OLX\ type bigBed 5\ visibility squish\ AstrocyteCerebellumDonor1_CNhs11321_ctss_rev AstrocyteCerebellumD1- bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse 0 2032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor1_CNhs11321_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor1_CNhs11321_tpm_rev AstrocyteCerebellumD1- bigWig Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse 1 2032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor1.CNhs11321.11500-119F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor1_CNhs11321_11500-119F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11500-119F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor1_CNhs11321_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11500-119F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF090ZAX ENCSR175EOM Signal bigWig K562 EHMT2 ENCSR175EOM signal 2 2032 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/3821d493-436f-4502-b698-c8dd3b054d2b/ENCFF090ZAX.bigWig\ color 254,75,173\ longLabel K562 EHMT2 ENCSR175EOM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175EOM Signal\ track wgEncodeReg4TfChip_ENCFF090ZAX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF702OCF ENCSR245HFY Signal bigWig CD4-positive, alpha-beta memory T cell male adult 43 years H3K27ac signal 2 2032 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/39ab0c04-bdc9-44e0-8362-3c29c6e1a47c/ENCFF702OCF.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell male adult 43 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245HFY Signal\ track wgEncodeReg4Epigenetics_ENCFF702OCF\ type bigWig\ visibility full\ AstrocyteCerebellumDonor2_CNhs12081_ctss_fwd AstrocyteCerebellumD2+ bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward 0 2033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor2_CNhs12081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_tpm_fwd AstrocyteCerebellumD2+ bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward 1 2033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor2_CNhs12081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF483TFF ENCSR175FLL Peak bigBed 5 Coronary artery tissue female adult (53 years) CTCF peaks 4 2033 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/903e45c8-c120-4476-8e07-afd442bb20d7/ENCFF483TFF.bigBed\ labelFields none\ longLabel Coronary artery tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175FLL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF483TFF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF492OBS ENCSR245YME Peak bigBed 5 CD14-positive monocyte H3K4me3 peak 4 2033 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/333ed432-ad22-4926-a291-1efa09e4a231/ENCFF492OBS.bigBed\ color 255,0,0\ longLabel CD14-positive monocyte H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245YME Peak\ track wgEncodeReg4Epigenetics_ENCFF492OBS\ type bigBed 5\ visibility squish\ AstrocyteCerebellumDonor2_CNhs12081_ctss_rev AstrocyteCerebellumD2- bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse 0 2034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor2_CNhs12081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor2_CNhs12081_tpm_rev AstrocyteCerebellumD2- bigWig Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse 1 2034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor2.CNhs12081.11580-120F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor2_CNhs12081_11580-120F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11580-120F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor2_CNhs12081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11580-120F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF341RAH ENCSR175FLL Signal bigWig Coronary artery tissue female adult (53 years) CTCF ENCSR175FLL signal 2 2034 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/83a10a68-fd7b-4503-9b7f-e4d9d1bbdb41/ENCFF341RAH.bigWig\ color 255,37,41\ longLabel Coronary artery tissue female adult (53 years) CTCF ENCSR175FLL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175FLL Signal\ track wgEncodeReg4TfChip_ENCFF341RAH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF414KJQ ENCSR245YME Signal bigWig CD14-positive monocyte H3K4me3 signal 2 2034 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/e3a00316-4b3e-46d6-85ff-063b53ae06d1/ENCFF414KJQ.bigWig\ color 255,0,0\ longLabel CD14-positive monocyte H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR245YME Signal\ track wgEncodeReg4Epigenetics_ENCFF414KJQ\ type bigWig\ visibility full\ AstrocyteCerebellumDonor3_CNhs12117_ctss_fwd AstrocyteCerebellumD3+ bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward 0 2035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor3_CNhs12117_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_tpm_fwd AstrocyteCerebellumD3+ bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward 1 2035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebellumDonor3_CNhs12117_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF797SOU ENCSR175SZH Peak bigBed 5 K562 ZSCAN29 peaks 4 2035 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/52379758-55dd-4e5e-9a5d-58bf4e8bcc48/ENCFF797SOU.bigBed\ labelFields none\ longLabel K562 ZSCAN29 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175SZH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF797SOU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF185UPI ENCSR246IBU Peak bigBed 5 Brain organoid male adult 53 years, 180 days post differentiation H3K4me3 peak 4 2035 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/d2fbe29f-752c-4a8a-82ea-5c6f8fcdd7f3/ENCFF185UPI.bigBed\ color 255,0,0\ longLabel Brain organoid male adult 53 years, 180 days post differentiation H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246IBU Peak\ track wgEncodeReg4Epigenetics_ENCFF185UPI\ type bigBed 5\ visibility squish\ AstrocyteCerebellumDonor3_CNhs12117_ctss_rev AstrocyteCerebellumD3- bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse 0 2036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebellumD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor3_CNhs12117_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ AstrocyteCerebellumDonor3_CNhs12117_tpm_rev AstrocyteCerebellumD3- bigWig Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse 1 2036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebellum%2c%20donor3.CNhs12117.11661-122F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebellum, donor3_CNhs12117_11661-122F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11661-122F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebellumD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebellumDonor3_CNhs12117_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11661-122F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF872JMF ENCSR175SZH Signal bigWig K562 ZSCAN29 ENCSR175SZH signal 2 2036 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/948ac451-76a1-4440-8592-13b1986b1a60/ENCFF872JMF.bigWig\ color 254,75,173\ longLabel K562 ZSCAN29 ENCSR175SZH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR175SZH Signal\ track wgEncodeReg4TfChip_ENCFF872JMF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF325DXX ENCSR246IBU Signal bigWig Brain organoid male adult 53 years, 180 days post differentiation H3K4me3 signal 2 2036 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/494707fc-cca4-461d-8d1e-eb8b60ece47d/ENCFF325DXX.bigWig\ color 255,0,0\ longLabel Brain organoid male adult 53 years, 180 days post differentiation H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246IBU Signal\ track wgEncodeReg4Epigenetics_ENCFF325DXX\ type bigWig\ visibility full\ AstrocyteCerebralCortexDonor1_CNhs10864_ctss_fwd AstrocyteCerebralCortexD1+ bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward 0 2037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor1_CNhs10864_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_tpm_fwd AstrocyteCerebralCortexD1+ bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward 1 2037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor1_CNhs10864_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF242UOB ENCSR176EXN Peak bigBed 5 MCF-7 JUN peaks 4 2037 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/6fb46be9-077d-42f4-9531-8344248f4058/ENCFF242UOB.bigBed\ labelFields none\ longLabel MCF-7 JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR176EXN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF242UOB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF464TWK ENCSR246PXX Peak bigBed 5 Stomach tissue male child 3 years DNase peak 4 2037 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/11f41b0c-ed44-465e-8e48-e77b74bdb3ab/ENCFF464TWK.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue male child 3 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246PXX Peak\ track wgEncodeReg4Epigenetics_ENCFF464TWK\ type bigBed 5\ visibility squish\ AstrocyteCerebralCortexDonor1_CNhs10864_ctss_rev AstrocyteCerebralCortexD1- bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse 0 2038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor1_CNhs10864_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor1_CNhs10864_tpm_rev AstrocyteCerebralCortexD1- bigWig Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse 1 2038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor1.CNhs10864.11235-116D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor1_CNhs10864_11235-116D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11235-116D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor1_CNhs10864_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11235-116D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF213CMB ENCSR176EXN Signal bigWig MCF-7 JUN ENCSR176EXN signal 2 2038 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a66be914-2260-4fae-b85d-e9fba5a382e5/ENCFF213CMB.bigWig\ color 65,171,173\ longLabel MCF-7 JUN ENCSR176EXN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR176EXN Signal\ track wgEncodeReg4TfChip_ENCFF213CMB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF557HYB ENCSR246PXX Signal bigWig Stomach tissue male child 3 years DNase signal 2 2038 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/0569e2a2-5e8c-465d-9dff-7be8dcb922ea/ENCFF557HYB.bigWig\ color 6,218,147\ longLabel Stomach tissue male child 3 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246PXX Signal\ track wgEncodeReg4Epigenetics_ENCFF557HYB\ type bigWig\ visibility full\ AstrocyteCerebralCortexDonor2_CNhs11960_ctss_fwd AstrocyteCerebralCortexD2+ bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward 0 2039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor2_CNhs11960_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_tpm_fwd AstrocyteCerebralCortexD2+ bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward 1 2039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor2_CNhs11960_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF363ZMN ENCSR177DNR Peak bigBed 5 K562 FIP1L1 peaks 4 2039 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/334e61c1-2c37-430a-a2fe-56fe11ac0e86/ENCFF363ZMN.bigBed\ labelFields none\ longLabel K562 FIP1L1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR177DNR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF363ZMN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF570EYF ENCSR246TTM Peak bigBed 5 Multiple sclerosis immature natural killer cell H3K27ac peak 4 2039 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9e305885-85ec-4769-baa1-15b624c20203/ENCFF570EYF.bigBed\ color 181,145,0\ longLabel Multiple sclerosis immature natural killer cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246TTM Peak\ track wgEncodeReg4Epigenetics_ENCFF570EYF\ type bigBed 5\ visibility squish\ AstrocyteCerebralCortexDonor2_CNhs11960_ctss_rev AstrocyteCerebralCortexD2- bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse 0 2040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor2_CNhs11960_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor2_CNhs11960_tpm_rev AstrocyteCerebralCortexD2- bigWig Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse 1 2040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor2.CNhs11960.11316-117D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor2_CNhs11960_11316-117D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11316-117D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor2_CNhs11960_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11316-117D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF714YZY ENCSR177DNR Signal bigWig K562 FIP1L1 ENCSR177DNR signal 2 2040 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/72b4c23e-ff69-48fb-886f-bd88df957cac/ENCFF714YZY.bigWig\ color 254,75,173\ longLabel K562 FIP1L1 ENCSR177DNR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR177DNR Signal\ track wgEncodeReg4TfChip_ENCFF714YZY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF689NDO ENCSR246TTM Signal bigWig Multiple sclerosis immature natural killer cell H3K27ac signal 2 2040 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/fd02776b-3bc1-48c9-bef1-653984359ec4/ENCFF689NDO.bigWig\ color 181,145,0\ longLabel Multiple sclerosis immature natural killer cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246TTM Signal\ track wgEncodeReg4Epigenetics_ENCFF689NDO\ type bigWig\ visibility full\ AstrocyteCerebralCortexDonor3_CNhs12005_ctss_fwd AstrocyteCerebralCortexD3+ bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward 0 2041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor3_CNhs12005_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_tpm_fwd AstrocyteCerebralCortexD3+ bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward 1 2041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track AstrocyteCerebralCortexDonor3_CNhs12005_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF427QAI ENCSR177VFS Peak bigBed 5 GM12878 MEF2B peaks 4 2041 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/beb1df13-5703-4ba5-9b6d-9eb22aa537a4/ENCFF427QAI.bigBed\ labelFields none\ longLabel GM12878 MEF2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR177VFS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF427QAI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF723PIZ ENCSR246VSO Peak bigBed 5 Heart right ventricle tissue female adult 56 years DNase peak 4 2041 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/a6b2e088-edfc-429e-92fc-6b500c17af7f/ENCFF723PIZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue female adult 56 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246VSO Peak\ track wgEncodeReg4Epigenetics_ENCFF723PIZ\ type bigBed 5\ visibility squish\ AstrocyteCerebralCortexDonor3_CNhs12005_ctss_rev AstrocyteCerebralCortexD3- bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse 0 2042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AstrocyteCerebralCortexD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor3_CNhs12005_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ AstrocyteCerebralCortexDonor3_CNhs12005_tpm_rev AstrocyteCerebralCortexD3- bigWig Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse 1 2042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Astrocyte%20-%20cerebral%20cortex%2c%20donor3.CNhs12005.11392-118C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Astrocyte - cerebral cortex, donor3_CNhs12005_11392-118C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11392-118C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AstrocyteCerebralCortexD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track AstrocyteCerebralCortexDonor3_CNhs12005_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11392-118C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF931IBK ENCSR177VFS Signal bigWig GM12878 MEF2B ENCSR177VFS signal 2 2042 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/db6d9b3d-f9e9-45b8-899a-70c09a914292/ENCFF931IBK.bigWig\ color 254,75,173\ longLabel GM12878 MEF2B ENCSR177VFS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR177VFS Signal\ track wgEncodeReg4TfChip_ENCFF931IBK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF118JST ENCSR246VSO Signal bigWig Heart right ventricle tissue female adult 56 years DNase signal 2 2042 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/d87f83f6-78ac-4a71-84df-fae1e057fe41/ENCFF118JST.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue female adult 56 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR246VSO Signal\ track wgEncodeReg4Epigenetics_ENCFF118JST\ type bigWig\ visibility full\ BasophilsDonor3_CNhs12575_ctss_fwd BasophilsD3+ bigWig Basophils, donor3_CNhs12575_12243-129H2_forward 0 2043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Basophils, donor3_CNhs12575_12243-129H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BasophilsDonor3_CNhs12575_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_tpm_fwd BasophilsD3+ bigWig Basophils, donor3_CNhs12575_12243-129H2_forward 1 2043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Basophils, donor3_CNhs12575_12243-129H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BasophilsDonor3_CNhs12575_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF480JXZ ENCSR177XCS Peak bigBed 5 K562 BRD9 peaks 4 2043 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/e16bc234-0c41-4794-ab26-384e5a77c234/ENCFF480JXZ.bigBed\ labelFields none\ longLabel K562 BRD9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR177XCS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF480JXZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF702IAN ENCSR247IUJ Peak bigBed 5 B cell male adult 37 years DNase peak 4 2043 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/6abb2838-5e5c-460a-a9fc-10fdfe777b88/ENCFF702IAN.bigBed\ color 6,218,147\ labelFields none\ longLabel B cell male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR247IUJ Peak\ track wgEncodeReg4Epigenetics_ENCFF702IAN\ type bigBed 5\ visibility squish\ BasophilsDonor3_CNhs12575_ctss_rev BasophilsD3- bigWig Basophils, donor3_CNhs12575_12243-129H2_reverse 0 2044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Basophils, donor3_CNhs12575_12243-129H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BasophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BasophilsDonor3_CNhs12575_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ BasophilsDonor3_CNhs12575_tpm_rev BasophilsD3- bigWig Basophils, donor3_CNhs12575_12243-129H2_reverse 1 2044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Basophils%2c%20donor3.CNhs12575.12243-129H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Basophils, donor3_CNhs12575_12243-129H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12243-129H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BasophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BasophilsDonor3_CNhs12575_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12243-129H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF031VIJ ENCSR177XCS Signal bigWig K562 BRD9 ENCSR177XCS signal 2 2044 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/7e908b15-e38e-4220-b2c9-9be9efd9d8ab/ENCFF031VIJ.bigWig\ color 254,75,173\ longLabel K562 BRD9 ENCSR177XCS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR177XCS Signal\ track wgEncodeReg4TfChip_ENCFF031VIJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF993MFJ ENCSR247IUJ Signal bigWig B cell male adult 37 years DNase signal 2 2044 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/19a441aa-9445-4773-920d-949188aadea3/ENCFF993MFJ.bigWig\ color 6,218,147\ longLabel B cell male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR247IUJ Signal\ track wgEncodeReg4Epigenetics_ENCFF993MFJ\ type bigWig\ visibility full\ BronchialEpithelialCellDonor1_CNhs11327_ctss_fwd BronchialEpithelialCellD1+ bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward 0 2045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor1_CNhs11327_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_tpm_fwd BronchialEpithelialCellD1+ bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward 1 2045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor1_CNhs11327_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF568JLK ENCSR178DEG Peak bigBed 5 K562 stably expressing NR2C1 NR2C1 peaks 4 2045 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/652cbd82-4177-4266-8177-66f079158796/ENCFF568JLK.bigBed\ labelFields none\ longLabel K562 stably expressing NR2C1 NR2C1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR178DEG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF568JLK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF367WGQ ENCSR248ZAC Peak bigBed 5 T-helper 17 cell male adult 42 years ATAC peak 4 2045 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/f396d97c-e3ad-4e1b-9995-7625090dc176/ENCFF367WGQ.bigBed\ color 2,199,185\ longLabel T-helper 17 cell male adult 42 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR248ZAC Peak\ track wgEncodeReg4Epigenetics_ENCFF367WGQ\ type bigBed 5\ visibility squish\ BronchialEpithelialCellDonor1_CNhs11327_ctss_rev BronchialEpithelialCellD1- bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse 0 2046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor1_CNhs11327_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor1_CNhs11327_tpm_rev BronchialEpithelialCellD1- bigWig Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse 1 2046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor1.CNhs11327.11511-119G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor1_CNhs11327_11511-119G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11511-119G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor1_CNhs11327_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11511-119G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF002KIE ENCSR178DEG Signal bigWig K562 stably expressing NR2C1 NR2C1 ENCSR178DEG signal 2 2046 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/d0c90a84-2ac9-4f40-bc17-6b8d6feebc35/ENCFF002KIE.bigWig\ color 254,75,173\ longLabel K562 stably expressing NR2C1 NR2C1 ENCSR178DEG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR178DEG Signal\ track wgEncodeReg4TfChip_ENCFF002KIE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF060YOU ENCSR248ZAC Signal bigWig T-helper 17 cell male adult 42 years ATAC signal 2 2046 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/7f83418b-9da7-41b7-b874-aca31da8d72e/ENCFF060YOU.bigWig\ color 2,199,185\ longLabel T-helper 17 cell male adult 42 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR248ZAC Signal\ track wgEncodeReg4Epigenetics_ENCFF060YOU\ type bigWig\ visibility full\ BronchialEpithelialCellDonor2_CNhs12085_ctss_fwd BronchialEpithelialCellD2+ bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward 0 2047 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor2_CNhs12085_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_tpm_fwd BronchialEpithelialCellD2+ bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward 1 2047 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor2_CNhs12085_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF902MYN ENCSR178NTX Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1 CUX1 peaks 4 2047 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3e9d7ac0-bd8d-4428-80f1-ef3eb8159aae/ENCFF902MYN.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1 CUX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR178NTX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF902MYN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF974NLK ENCSR249FXU Peak bigBed 5 HG03045 ATAC peak 4 2047 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/31c421ec-4d3f-4780-a5b4-768917921747/ENCFF974NLK.bigBed\ color 2,199,185\ longLabel HG03045 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249FXU Peak\ track wgEncodeReg4Epigenetics_ENCFF974NLK\ type bigBed 5\ visibility squish\ BronchialEpithelialCellDonor2_CNhs12085_ctss_rev BronchialEpithelialCellD2- bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse 0 2048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor2_CNhs12085_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor2_CNhs12085_tpm_rev BronchialEpithelialCellD2- bigWig Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse 1 2048 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor2.CNhs12085.11591-120G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor2_CNhs12085_11591-120G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11591-120G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor2_CNhs12085_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11591-120G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF264YJM ENCSR178NTX Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1 CUX1 ENCSR178NTX signal 2 2048 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c82b575e-56b6-48eb-acf9-8ebee43a16d4/ENCFF264YJM.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens CUX1 CUX1 ENCSR178NTX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR178NTX Signal\ track wgEncodeReg4TfChip_ENCFF264YJM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF519OXO ENCSR249FXU Signal bigWig HG03045 ATAC signal 2 2048 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/a685235b-657c-4dee-91b5-539a76708507/ENCFF519OXO.bigWig\ color 2,199,185\ longLabel HG03045 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249FXU Signal\ track wgEncodeReg4Epigenetics_ENCFF519OXO\ type bigWig\ visibility full\ BronchialEpithelialCellDonor3_CNhs12623_ctss_fwd BronchialEpithelialCellD3+ bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward 0 2049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor3_CNhs12623_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_tpm_fwd BronchialEpithelialCellD3+ bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward 1 2049 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor3_CNhs12623_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF955JRZ ENCSR179SAO Peak bigBed 5 A673 EZH2 peaks 4 2049 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/5fb83b3a-395a-4ba6-997f-66fc27b4a5c0/ENCFF955JRZ.bigBed\ labelFields none\ longLabel A673 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR179SAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF955JRZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF266IBZ ENCSR249IKQ Peak bigBed 5 Peyer's patch tissue female adult 51 years H3K27ac peak 4 2049 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/e97d29a8-dcf6-4f43-b1db-9cd0f865cee8/ENCFF266IBZ.bigBed\ color 181,145,0\ longLabel Peyer's patch tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249IKQ Peak\ track wgEncodeReg4Epigenetics_ENCFF266IBZ\ type bigBed 5\ visibility squish\ BronchialEpithelialCellDonor3_CNhs12623_ctss_rev BronchialEpithelialCellD3- bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse 0 2050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor3_CNhs12623_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor3_CNhs12623_tpm_rev BronchialEpithelialCellD3- bigWig Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse 1 2050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor3.CNhs12623.11672-122G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor3_CNhs12623_11672-122G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11672-122G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor3_CNhs12623_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11672-122G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF046LPW ENCSR179SAO Signal bigWig A673 EZH2 ENCSR179SAO signal 2 2050 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/c485395e-4548-4a37-b9bb-d3ef347872f9/ENCFF046LPW.bigWig\ color 137,135,170\ longLabel A673 EZH2 ENCSR179SAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR179SAO Signal\ track wgEncodeReg4TfChip_ENCFF046LPW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF525KQP ENCSR249IKQ Signal bigWig Peyer's patch tissue female adult 51 years H3K27ac signal 2 2050 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/2271d67f-b87d-4bcc-910f-8ccafe0a7f19/ENCFF525KQP.bigWig\ color 181,145,0\ longLabel Peyer's patch tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249IKQ Signal\ track wgEncodeReg4Epigenetics_ENCFF525KQP\ type bigWig\ visibility full\ BronchialEpithelialCellDonor4_CNhs12054_ctss_fwd BronchialEpithelialCellD4+ bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward 0 2051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor4_CNhs12054_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_tpm_fwd BronchialEpithelialCellD4+ bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward 1 2051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor4_CNhs12054_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF986CSN ENCSR180MUU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 peaks 4 2051 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/bdc326c2-ed89-44b3-841e-c80c844af883/ENCFF986CSN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR180MUU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF986CSN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF264MGR ENCSR249INE Peak bigBed 5 Uterus tissue female adult 53 years H3K27ac peak 4 2051 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/a960a41c-d73d-485e-a60f-7ddde1f4253d/ENCFF264MGR.bigBed\ color 181,145,0\ longLabel Uterus tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249INE Peak\ track wgEncodeReg4Epigenetics_ENCFF264MGR\ type bigBed 5\ visibility squish\ BronchialEpithelialCellDonor4_CNhs12054_ctss_rev BronchialEpithelialCellD4- bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse 0 2052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor4_CNhs12054_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor4_CNhs12054_tpm_rev BronchialEpithelialCellD4- bigWig Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse 1 2052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor4.CNhs12054.11453-119A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor4_CNhs12054_11453-119A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11453-119A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor4_CNhs12054_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11453-119A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF456PXR ENCSR180MUU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 ENCSR180MUU signal 2 2052 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/11b660c9-65af-474e-86d7-802c2e3200e6/ENCFF456PXR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 ENCSR180MUU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR180MUU Signal\ track wgEncodeReg4TfChip_ENCFF456PXR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF154QOP ENCSR249INE Signal bigWig Uterus tissue female adult 53 years H3K27ac signal 2 2052 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/bb880727-2276-4b0e-8d9d-dde4bd81851e/ENCFF154QOP.bigWig\ color 181,145,0\ longLabel Uterus tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249INE Signal\ track wgEncodeReg4Epigenetics_ENCFF154QOP\ type bigWig\ visibility full\ BronchialEpithelialCellDonor5_CNhs12058_ctss_fwd BronchialEpithelialCellD5+ bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward 0 2053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor5_CNhs12058_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_tpm_fwd BronchialEpithelialCellD5+ bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward 1 2053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor5_CNhs12058_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF388QCK ENCSR181ABP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF768 ZNF768 peaks 4 2053 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/60fbdf14-2f99-44ad-ae1a-237898241415/ENCFF388QCK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF768 ZNF768 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR181ABP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF388QCK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF871HAS ENCSR249RFY Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 2053 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/fe356dbb-d77b-479b-933f-096051b3fc2e/ENCFF871HAS.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249RFY Peak\ track wgEncodeReg4Epigenetics_ENCFF871HAS\ type bigBed 5\ visibility squish\ BronchialEpithelialCellDonor5_CNhs12058_ctss_rev BronchialEpithelialCellD5- bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse 0 2054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor5_CNhs12058_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor5_CNhs12058_tpm_rev BronchialEpithelialCellD5- bigWig Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse 1 2054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor5.CNhs12058.11457-119A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor5_CNhs12058_11457-119A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11457-119A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor5_CNhs12058_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11457-119A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF539HHR ENCSR181ABP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF768 ZNF768 ENCSR181ABP signal 2 2054 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/336bf522-333c-4c08-a6e3-7476001e56a6/ENCFF539HHR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF768 ZNF768 ENCSR181ABP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR181ABP Signal\ track wgEncodeReg4TfChip_ENCFF539HHR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF994MAI ENCSR249RFY Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 2054 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/b3aa024f-43eb-4776-89c8-feba77b81ed5/ENCFF994MAI.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR249RFY Signal\ track wgEncodeReg4Epigenetics_ENCFF994MAI\ type bigWig\ visibility full\ BronchialEpithelialCellDonor6_CNhs12062_ctss_fwd BronchialEpithelialCellD6+ bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward 0 2055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor6_CNhs12062_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_tpm_fwd BronchialEpithelialCellD6+ bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward 1 2055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor6_CNhs12062_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF299MFD ENCSR182QWU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 peaks 4 2055 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/75baa0c3-57a4-49cc-b533-6febf512f531/ENCFF299MFD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR182QWU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF299MFD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF067BEF ENCSR250GDW Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-4 for 1 hour DNase peak 4 2055 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/323bb038-b148-421c-b863-1d8d381f0e39/ENCFF067BEF.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-4 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR250GDW Peak\ track wgEncodeReg4Epigenetics_ENCFF067BEF\ type bigBed 5\ visibility squish\ BronchialEpithelialCellDonor6_CNhs12062_ctss_rev BronchialEpithelialCellD6- bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse 0 2056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor6_CNhs12062_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor6_CNhs12062_tpm_rev BronchialEpithelialCellD6- bigWig Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse 1 2056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor6.CNhs12062.11461-119B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor6_CNhs12062_11461-119B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11461-119B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor6_CNhs12062_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11461-119B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF249CBL ENCSR182QWU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 ENCSR182QWU signal 2 2056 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/9176e30f-4dc4-4461-9a2a-c7d965f874d7/ENCFF249CBL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 ENCSR182QWU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR182QWU Signal\ track wgEncodeReg4TfChip_ENCFF249CBL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF288CFM ENCSR250GDW Signal bigWig CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-4 for 1 hour DNase signal 2 2056 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/d7e64fd0-dc41-4e7a-9bd2-b1a11370a185/ENCFF288CFM.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-4 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR250GDW Signal\ track wgEncodeReg4Epigenetics_ENCFF288CFM\ type bigWig\ visibility full\ BronchialEpithelialCellDonor7_CNhs12642_ctss_fwd BronchialEpithelialCellD7+ bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward 0 2057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor7_CNhs12642_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_tpm_fwd BronchialEpithelialCellD7+ bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward 1 2057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track BronchialEpithelialCellDonor7_CNhs12642_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF066YCU ENCSR183AXJ Peak bigBed 5 HepG2 HNRNPUL1 peaks 4 2057 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e21fab1b-fa23-45b2-af57-4a934852c082/ENCFF066YCU.bigBed\ labelFields none\ longLabel HepG2 HNRNPUL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR183AXJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF066YCU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF730UDT ENCSR250NHD Peak bigBed 5 Psoas muscle tissue female adult 30 years H3K27ac peak 4 2057 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/33e2d6d7-452a-4a78-af51-2fa064edf292/ENCFF730UDT.bigBed\ color 181,145,0\ longLabel Psoas muscle tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR250NHD Peak\ track wgEncodeReg4Epigenetics_ENCFF730UDT\ type bigBed 5\ visibility squish\ BronchialEpithelialCellDonor7_CNhs12642_ctss_rev BronchialEpithelialCellD7- bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse 0 2058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BronchialEpithelialCellD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor7_CNhs12642_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ BronchialEpithelialCellDonor7_CNhs12642_tpm_rev BronchialEpithelialCellD7- bigWig Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse 1 2058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Bronchial%20Epithelial%20Cell%2c%20donor7.CNhs12642.11769-123I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Bronchial Epithelial Cell, donor7_CNhs12642_11769-123I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11769-123I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BronchialEpithelialCellD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track BronchialEpithelialCellDonor7_CNhs12642_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11769-123I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF680RHF ENCSR183AXJ Signal bigWig HepG2 HNRNPUL1 ENCSR183AXJ signal 2 2058 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/14d3c05e-5c66-4a83-8cba-32786c66a055/ENCFF680RHF.bigWig\ color 137,152,82\ longLabel HepG2 HNRNPUL1 ENCSR183AXJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR183AXJ Signal\ track wgEncodeReg4TfChip_ENCFF680RHF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF912BEJ ENCSR250NHD Signal bigWig Psoas muscle tissue female adult 30 years H3K27ac signal 2 2058 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/1ab8edb5-69a7-400d-ab32-ac46fff396ef/ENCFF912BEJ.bigWig\ color 181,145,0\ longLabel Psoas muscle tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR250NHD Signal\ track wgEncodeReg4Epigenetics_ENCFF912BEJ\ type bigWig\ visibility full\ CardiacMyocyteDonor1_CNhs12341_ctss_fwd CardiacMyocyteD1+ bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward 0 2059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor1_CNhs12341_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_tpm_fwd CardiacMyocyteD1+ bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward 1 2059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor1_CNhs12341_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF281CEA ENCSR184MFH Peak bigBed 5 HeLa-S3 ZFP36 peaks 4 2059 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9f46b627-27c8-4022-8fad-6dd69ba827fa/ENCFF281CEA.bigBed\ labelFields none\ longLabel HeLa-S3 ZFP36 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR184MFH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF281CEA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF896AZK ENCSR251BHU Peak bigBed 5 Middle frontal area 46 tissue female adult 82 years CTCF peak 4 2059 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/5baa9a80-55ee-415e-ac08-e565ae37a083/ENCFF896AZK.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 82 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251BHU Peak\ track wgEncodeReg4Epigenetics_ENCFF896AZK\ type bigBed 5\ visibility squish\ CardiacMyocyteDonor1_CNhs12341_ctss_rev CardiacMyocyteD1- bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse 0 2060 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor1_CNhs12341_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor1_CNhs12341_tpm_rev CardiacMyocyteD1- bigWig Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse 1 2060 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor1.CNhs12341.11525-119I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor1_CNhs12341_11525-119I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11525-119I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor1_CNhs12341_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11525-119I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF710BEC ENCSR184MFH Signal bigWig HeLa-S3 ZFP36 ENCSR184MFH signal 2 2060 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/690f2f40-f844-4e00-a03f-45cd30d8b833/ENCFF710BEC.bigWig\ color 186,111,165\ longLabel HeLa-S3 ZFP36 ENCSR184MFH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR184MFH Signal\ track wgEncodeReg4TfChip_ENCFF710BEC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF417AGZ ENCSR251BHU Signal bigWig Middle frontal area 46 tissue female adult 82 years CTCF signal 2 2060 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/858df886-597f-4475-933e-604906276e0f/ENCFF417AGZ.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 82 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251BHU Signal\ track wgEncodeReg4Epigenetics_ENCFF417AGZ\ type bigWig\ visibility full\ CardiacMyocyteDonor2_CNhs12350_ctss_fwd CardiacMyocyteD2+ bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward 0 2061 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor2_CNhs12350_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor2_CNhs12350_tpm_fwd CardiacMyocyteD2+ bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward 1 2061 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor2_CNhs12350_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF492SAJ ENCSR184SVO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB26 ZBTB26 peaks 4 2061 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/96cf0272-ffbd-4c3a-a3e0-7667fc20a722/ENCFF492SAJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB26 ZBTB26 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR184SVO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF492SAJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF673RMM ENCSR251IKC Peak bigBed 5 Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 peak 4 2061 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/cb0c0bd8-b3ed-4b5d-8a69-ce62907cc42f/ENCFF673RMM.bigBed\ color 255,0,0\ longLabel Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251IKC Peak\ track wgEncodeReg4Epigenetics_ENCFF673RMM\ type bigBed 5\ visibility squish\ CardiacMyocyteDonor2_CNhs12350_ctss_rev CardiacMyocyteD2- bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse 0 2062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor2_CNhs12350_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor2_CNhs12350_tpm_rev CardiacMyocyteD2- bigWig Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse 1 2062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor2.CNhs12350.11605-120I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor2_CNhs12350_11605-120I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11605-120I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor2_CNhs12350_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11605-120I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF489IGB ENCSR184SVO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB26 ZBTB26 ENCSR184SVO signal 2 2062 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/10b20370-5396-4f74-808a-e5bb5a5939b5/ENCFF489IGB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB26 ZBTB26 ENCSR184SVO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR184SVO Signal\ track wgEncodeReg4TfChip_ENCFF489IGB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF597DCN ENCSR251IKC Signal bigWig Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 signal 2 2062 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/fdf74c1c-e68a-4208-848a-57e1f645ac85/ENCFF597DCN.bigWig\ color 255,0,0\ longLabel Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251IKC Signal\ track wgEncodeReg4Epigenetics_ENCFF597DCN\ type bigWig\ visibility full\ CardiacMyocyteDonor3_CNhs12571_ctss_fwd CardiacMyocyteD3+ bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward 0 2063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor3_CNhs12571_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor3_CNhs12571_tpm_fwd CardiacMyocyteD3+ bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward 1 2063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CardiacMyocyteDonor3_CNhs12571_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF818WYO ENCSR185AYQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1 DR1 peaks 4 2063 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/09/23/22d54d06-d2ca-49f1-922a-86f6060f070b/ENCFF818WYO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1 DR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185AYQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF818WYO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF176KVK ENCSR251INE Peak bigBed 5 T-cell female adult 24 years DNase peak 4 2063 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/0f24fc6a-e159-446b-ac70-e5b70f597bec/ENCFF176KVK.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251INE Peak\ track wgEncodeReg4Epigenetics_ENCFF176KVK\ type bigBed 5\ visibility squish\ CardiacMyocyteDonor3_CNhs12571_ctss_rev CardiacMyocyteD3- bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse 0 2064 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CardiacMyocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor3_CNhs12571_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ CardiacMyocyteDonor3_CNhs12571_tpm_rev CardiacMyocyteD3- bigWig Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse 1 2064 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Cardiac%20Myocyte%2c%20donor3.CNhs12571.11686-122I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Cardiac Myocyte, donor3_CNhs12571_11686-122I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11686-122I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CardiacMyocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CardiacMyocyteDonor3_CNhs12571_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11686-122I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF469USB ENCSR185AYQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1 DR1 ENCSR185AYQ signal 2 2064 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/28/080ca85f-034b-4144-a86c-aaf8d82a6367/ENCFF469USB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1 DR1 ENCSR185AYQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185AYQ Signal\ track wgEncodeReg4TfChip_ENCFF469USB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF667QSN ENCSR251INE Signal bigWig T-cell female adult 24 years DNase signal 2 2064 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/f79e60bc-a04d-4b7c-9c19-341de7e8bdc2/ENCFF667QSN.bigWig\ color 6,218,147\ longLabel T-cell female adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251INE Signal\ track wgEncodeReg4Epigenetics_ENCFF667QSN\ type bigWig\ visibility full\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_fwd CbStemCellsD1+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward 0 2065 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_fwd CbStemCellsD1+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward 1 2065 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF918GTC ENCSR185CCV Peak bigBed 5 Stomach tissue female adult (53 years) CTCF peaks 4 2065 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/c623713a-dc7f-4ee0-a63e-ea7f5f9a0de9/ENCFF918GTC.bigBed\ labelFields none\ longLabel Stomach tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185CCV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF918GTC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF512DHS ENCSR251POP Peak bigBed 5 Pancreas tissue female adult 61 years ATAC peak 4 2065 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/496c95a2-e117-4df2-a7b0-36549d05a2a8/ENCFF512DHS.bigBed\ color 2,199,185\ longLabel Pancreas tissue female adult 61 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251POP Peak\ track wgEncodeReg4Epigenetics_ENCFF512DHS\ type bigBed 5\ visibility squish\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_rev CbStemCellsD1- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse 0 2066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_rev CbStemCellsD1- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse 1 2066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor1.CNhs11350.11549-120C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1_CNhs11350_11549-120C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11549-120C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor1_CNhs11350_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11549-120C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF807KJZ ENCSR185CCV Signal bigWig Stomach tissue female adult (53 years) CTCF ENCSR185CCV signal 2 2066 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/0eda3f59-d6de-4adf-918c-3b088f49593b/ENCFF807KJZ.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (53 years) CTCF ENCSR185CCV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185CCV Signal\ track wgEncodeReg4TfChip_ENCFF807KJZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF863PLK ENCSR251POP Signal bigWig Pancreas tissue female adult 61 years ATAC signal 2 2066 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/90c5418a-abf9-4af1-9f34-527ff0e2e024/ENCFF863PLK.bigWig\ color 2,199,185\ longLabel Pancreas tissue female adult 61 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251POP Signal\ track wgEncodeReg4Epigenetics_ENCFF863PLK\ type bigWig\ visibility full\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_fwd CbStemCellsD2+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward 0 2067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_fwd CbStemCellsD2+ bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward 1 2067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF944VMC ENCSR185FOY Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF341 ZNF341 peaks 4 2067 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/2280e51a-4222-4ff8-af63-9e3d58fa4310/ENCFF944VMC.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF341 ZNF341 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185FOY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF944VMC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF404IOA ENCSR251PPB Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 2067 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/ee3ab909-171d-4b4c-950b-61196a336d42/ENCFF404IOA.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251PPB Peak\ track wgEncodeReg4Epigenetics_ENCFF404IOA\ type bigBed 5\ visibility squish\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_rev CbStemCellsD2- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse 0 2068 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CbStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_rev CbStemCellsD2- bigWig Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse 1 2068 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Multipotent%20Cord%20Blood%20Unrestricted%20Somatic%20Stem%20Cells%2c%20donor2.CNhs12105.11629-122B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2_CNhs12105_11629-122B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11629-122B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CbStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MultipotentCordBloodUnrestrictedSomaticStemCellsDonor2_CNhs12105_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11629-122B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF798CWR ENCSR185FOY Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF341 ZNF341 ENCSR185FOY signal 2 2068 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/0152790f-cff6-48ba-a70b-752d1bee33c8/ENCFF798CWR.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF341 ZNF341 ENCSR185FOY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185FOY Signal\ track wgEncodeReg4TfChip_ENCFF798CWR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF701XQB ENCSR251PPB Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 2068 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/b670085b-6672-4b39-8f8c-094f6813034d/ENCFF701XQB.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251PPB Signal\ track wgEncodeReg4Epigenetics_ENCFF701XQB\ type bigWig\ visibility full\ CD14CD16MonocytesDonor1_CNhs13541_ctss_fwd Cd14+cd16+MonocytesD1+ bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward 0 2069 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13541_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13541_tpm_fwd Cd14+cd16+MonocytesD1+ bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward 1 2069 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13541_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF565EYY ENCSR185QFX Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549 ZNF549 peaks 4 2069 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/94ce8cf5-b835-44cc-b5ab-f086113e17e6/ENCFF565EYY.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549 ZNF549 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185QFX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF565EYY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF839UMC ENCSR251UPG Peak bigBed 5 Foreskin fibroblast male newborn DNase peak 4 2069 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/4c55e936-e92f-4e17-9b67-3d42fe4f8a82/ENCFF839UMC.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin fibroblast male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251UPG Peak\ track wgEncodeReg4Epigenetics_ENCFF839UMC\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor1_CNhs13541_ctss_rev Cd14+cd16+MonocytesD1- bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse 0 2070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13541_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13541_tpm_rev Cd14+cd16+MonocytesD1- bigWig CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse 1 2070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor1.CNhs13541.11789-124B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor1_CNhs13541_11789-124B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11789-124B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13541_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11789-124B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF767DAS ENCSR185QFX Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549 ZNF549 ENCSR185QFX signal 2 2070 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/6035a171-d178-45a1-a8eb-f0b42fb08cbe/ENCFF767DAS.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF549 ZNF549 ENCSR185QFX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR185QFX Signal\ track wgEncodeReg4TfChip_ENCFF767DAS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF261OJD ENCSR251UPG Signal bigWig Foreskin fibroblast male newborn DNase signal 2 2070 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/d3a16608-ad3a-441e-808b-1c7214de5f4a/ENCFF261OJD.bigWig\ color 6,218,147\ longLabel Foreskin fibroblast male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR251UPG Signal\ track wgEncodeReg4Epigenetics_ENCFF261OJD\ type bigWig\ visibility full\ CD14CD16MonocytesDonor2_CNhs13208_ctss_fwd Cd14+cd16+MonocytesD2+ bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward 0 2071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13208_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_tpm_fwd Cd14+cd16+MonocytesD2+ bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward 1 2071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13208_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF918KPI ENCSR186NVR Peak bigBed 5 Gastroesophageal sphincter tissue male adult (37 years) CTCF peaks 4 2071 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/c5bffd53-94cd-4caf-8737-03ccf389e936/ENCFF918KPI.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR186NVR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF918KPI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF582UJI ENCSR252NVI Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak 4 2071 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/356c55cc-d980-4012-9954-b7effe57591c/ENCFF582UJI.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR252NVI Peak\ track wgEncodeReg4Epigenetics_ENCFF582UJI\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor2_CNhs13208_ctss_rev Cd14+cd16+MonocytesD2- bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse 0 2072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13208_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13208_tpm_rev Cd14+cd16+MonocytesD2- bigWig CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse 1 2072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor2.CNhs13208.11801-124D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor2_CNhs13208_11801-124D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11801-124D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13208_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11801-124D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF517ABA ENCSR186NVR Signal bigWig Gastroesophageal sphincter tissue male adult (37 years) CTCF ENCSR186NVR signal 2 2072 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/082ec768-73e0-4b28-b27f-2908e65483e7/ENCFF517ABA.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (37 years) CTCF ENCSR186NVR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR186NVR Signal\ track wgEncodeReg4TfChip_ENCFF517ABA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF032VQN ENCSR252NVI Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal 2 2072 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/266635d9-56c2-4431-8f73-85d6b5a0c0ff/ENCFF032VQN.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-10 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR252NVI Signal\ track wgEncodeReg4Epigenetics_ENCFF032VQN\ type bigWig\ visibility full\ CD14CD16MonocytesDonor3_CNhs13549_ctss_fwd Cd14+cd16+MonocytesD3+ bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward 0 2073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_tpm_fwd Cd14+cd16+MonocytesD3+ bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward 1 2073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF017SIW ENCSR188EMJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAI1 SNAI1 peaks 4 2073 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/9aeb8de4-8719-4362-962e-708e6bb89314/ENCFF017SIW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAI1 SNAI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR188EMJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF017SIW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF263BLJ ENCSR252QYR Peak bigBed 5 Hepatocyte originated from H9 CTCF peak 4 2073 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9bffc3b4-212c-4ac6-b327-09845da75ed0/ENCFF263BLJ.bigBed\ color 0,176,240\ labelFields none\ longLabel Hepatocyte originated from H9 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR252QYR Peak\ track wgEncodeReg4Epigenetics_ENCFF263BLJ\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor3_CNhs13549_ctss_rev Cd14+cd16+MonocytesD3- bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse 0 2074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13549_tpm_rev Cd14+cd16+MonocytesD3- bigWig CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse 1 2074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16%2b%20Monocytes%2c%20donor3.CNhs13549.11912-125G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16+ Monocytes, donor3_CNhs13549_11912-125G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11912-125G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11912-125G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF269OSH ENCSR188EMJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAI1 SNAI1 ENCSR188EMJ signal 2 2074 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/21c2e06e-f9ee-4139-b22d-e7dc4e37cae1/ENCFF269OSH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAI1 SNAI1 ENCSR188EMJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR188EMJ Signal\ track wgEncodeReg4TfChip_ENCFF269OSH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF491FMJ ENCSR252QYR Signal bigWig Hepatocyte originated from H9 CTCF signal 2 2074 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/50c53f10-7ec2-4d40-a0d0-03695c2ef3cb/ENCFF491FMJ.bigWig\ color 0,176,240\ longLabel Hepatocyte originated from H9 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR252QYR Signal\ track wgEncodeReg4Epigenetics_ENCFF491FMJ\ type bigWig\ visibility full\ CD14CD16MonocytesDonor1_CNhs13224_ctss_fwd Cd14+cd16-MonocytesD1+ bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward 0 2075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13224_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_tpm_fwd Cd14+cd16-MonocytesD1+ bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward 1 2075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor1_CNhs13224_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF257AUK ENCSR188XCX Peak bigBed 5 Adrenal gland tissue female adult (41 years) CTCF peaks 4 2075 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/dabd49b4-52ad-4fcf-ac60-5ea551843f6a/ENCFF257AUK.bigBed\ labelFields none\ longLabel Adrenal gland tissue female adult (41 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR188XCX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF257AUK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF055ALO ENCSR252XWG Peak bigBed 5 Lower leg skin tissue male adult 54 years CTCF peak 4 2075 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/81f67b60-2c8d-402f-a680-99e6bc8a416d/ENCFF055ALO.bigBed\ color 0,176,240\ labelFields none\ longLabel Lower leg skin tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR252XWG Peak\ track wgEncodeReg4Epigenetics_ENCFF055ALO\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor1_CNhs13224_ctss_rev Cd14+cd16-MonocytesD1- bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse 0 2076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13224_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor1_CNhs13224_tpm_rev Cd14+cd16-MonocytesD1- bigWig CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse 1 2076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor1.CNhs13224.11788-124B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor1_CNhs13224_11788-124B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11788-124B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor1_CNhs13224_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11788-124B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF796PZW ENCSR188XCX Signal bigWig Adrenal gland tissue female adult (41 years) CTCF ENCSR188XCX signal 2 2076 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/5caf1c1c-9935-415c-b97a-d66fe1b28a5b/ENCFF796PZW.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (41 years) CTCF ENCSR188XCX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR188XCX Signal\ track wgEncodeReg4TfChip_ENCFF796PZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF881OCE ENCSR252XWG Signal bigWig Lower leg skin tissue male adult 54 years CTCF signal 2 2076 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/5d61d50a-5674-445b-8c10-ee2b1f059fc5/ENCFF881OCE.bigWig\ color 0,176,240\ longLabel Lower leg skin tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR252XWG Signal\ track wgEncodeReg4Epigenetics_ENCFF881OCE\ type bigWig\ visibility full\ CD14CD16MonocytesDonor2_CNhs13216_ctss_fwd Cd14+cd16-MonocytesD2+ bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward 0 2077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13216_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_tpm_fwd Cd14+cd16-MonocytesD2+ bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward 1 2077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13216_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF909RDY ENCSR189TRZ Peak bigBed 5 K562 TCF12 peaks 4 2077 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/77394458-e9e4-4cb8-aaad-04f6bae68e8b/ENCFF909RDY.bigBed\ labelFields none\ longLabel K562 TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189TRZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF909RDY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF372XNU ENCSR253ALG Peak bigBed 5 Pancreas tissue female adult 61 years CTCF peak 4 2077 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/93b65ef4-7bf2-46a8-bba3-76a43f9f6c7b/ENCFF372XNU.bigBed\ color 0,176,240\ labelFields none\ longLabel Pancreas tissue female adult 61 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR253ALG Peak\ track wgEncodeReg4Epigenetics_ENCFF372XNU\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor2_CNhs13216_ctss_rev Cd14+cd16-MonocytesD2- bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse 0 2078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13216_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13216_tpm_rev Cd14+cd16-MonocytesD2- bigWig CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse 1 2078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor2.CNhs13216.11799-124C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor2_CNhs13216_11799-124C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11799-124C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13216_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11799-124C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF276RGD ENCSR189TRZ Signal bigWig K562 TCF12 ENCSR189TRZ signal 2 2078 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/2307abc1-f144-45c1-89aa-e01df82deb10/ENCFF276RGD.bigWig\ color 254,75,173\ longLabel K562 TCF12 ENCSR189TRZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189TRZ Signal\ track wgEncodeReg4TfChip_ENCFF276RGD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF232BMJ ENCSR253ALG Signal bigWig Pancreas tissue female adult 61 years CTCF signal 2 2078 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/10f1be29-ad0b-40c0-bb0a-1b7fb09052a6/ENCFF232BMJ.bigWig\ color 0,176,240\ longLabel Pancreas tissue female adult 61 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR253ALG Signal\ track wgEncodeReg4Epigenetics_ENCFF232BMJ\ type bigWig\ visibility full\ CD14CD16MonocytesDonor3_CNhs13540_ctss_fwd Cd14+cd16-MonocytesD3+ bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward 0 2079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13540_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_tpm_fwd Cd14+cd16-MonocytesD3+ bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward 1 2079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13540_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF485ALN ENCSR189VXS Peak bigBed 5 K562 GTF2F1 peaks 4 2079 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/1afa75e9-7d32-4dcc-8bd2-98756dde0ead/ENCFF485ALN.bigBed\ labelFields none\ longLabel K562 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189VXS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF485ALN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF299CLD ENCSR253QLW Peak bigBed 5 GM18511 ATAC peak 4 2079 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/1f20867c-3360-4c00-9070-06814c9453c7/ENCFF299CLD.bigBed\ color 2,199,185\ longLabel GM18511 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR253QLW Peak\ track wgEncodeReg4Epigenetics_ENCFF299CLD\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor3_CNhs13540_ctss_rev Cd14+cd16-MonocytesD3- bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse 0 2080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+cd16-MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13540_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13540_tpm_rev Cd14+cd16-MonocytesD3- bigWig CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse 1 2080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2bCD16-%20Monocytes%2c%20donor3.CNhs13540.11910-125G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+CD16- Monocytes, donor3_CNhs13540_11910-125G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11910-125G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+cd16-MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13540_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11910-125G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF978FPE ENCSR189VXS Signal bigWig K562 GTF2F1 ENCSR189VXS signal 2 2080 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/745ddc4c-a0ea-4a5d-872e-b42f4342365c/ENCFF978FPE.bigWig\ color 254,75,173\ longLabel K562 GTF2F1 ENCSR189VXS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189VXS Signal\ track wgEncodeReg4TfChip_ENCFF978FPE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF990WXU ENCSR253QLW Signal bigWig GM18511 ATAC signal 2 2080 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/1eb756dd-68a3-4068-8d90-b3c5fe4c6b44/ENCFF990WXU.bigWig\ color 2,199,185\ longLabel GM18511 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR253QLW Signal\ track wgEncodeReg4Epigenetics_ENCFF990WXU\ type bigWig\ visibility full\ CD14MonocytesDonor1_CNhs10852_ctss_fwd Cd14+MoD1+ bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward 0 2081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor1_CNhs10852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_tpm_fwd Cd14+MoD1+ bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward 1 2081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor1_CNhs10852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF053XDV ENCSR189YMA Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1 VEZF1 peaks 4 2081 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a9d9ad76-0a73-4d44-ad7a-24ad31659a21/ENCFF053XDV.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1 VEZF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189YMA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF053XDV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF246KVB ENCSR254AGA Peak bigBed 5 Renal cortex interstitium tissue male embryo 91 days DNase peak 4 2081 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e16f47df-f9c8-4201-b9af-dab518bea19f/ENCFF246KVB.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal cortex interstitium tissue male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR254AGA Peak\ track wgEncodeReg4Epigenetics_ENCFF246KVB\ type bigBed 5\ visibility squish\ CD14MonocytesDonor1_CNhs10852_ctss_rev Cd14+MoD1- bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse 0 2082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor1_CNhs10852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor1_CNhs10852_tpm_rev Cd14+MoD1- bigWig CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse 1 2082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor1.CNhs10852.11224-116B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor1_CNhs10852_11224-116B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11224-116B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor1_CNhs10852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11224-116B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF710TIG ENCSR189YMA Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1 VEZF1 ENCSR189YMA signal 2 2082 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d5dc4460-c351-47fc-b42d-4097fd2e3bf5/ENCFF710TIG.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens VEZF1 VEZF1 ENCSR189YMA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189YMA Signal\ track wgEncodeReg4TfChip_ENCFF710TIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF308HSD ENCSR254AGA Signal bigWig Renal cortex interstitium tissue male embryo 91 days DNase signal 2 2082 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4562f464-b08b-4406-a281-b538770abe1a/ENCFF308HSD.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR254AGA Signal\ track wgEncodeReg4Epigenetics_ENCFF308HSD\ type bigWig\ visibility full\ CD14MonocytesDonor2_CNhs11954_ctss_fwd Cd14+MoD2+ bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward 0 2083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor2_CNhs11954_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_tpm_fwd Cd14+MoD2+ bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward 1 2083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor2_CNhs11954_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF346DYM ENCSR189YYK Peak bigBed 5 GM12878 ZBTB40 peaks 4 2083 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/6d420159-4431-4af8-bfc4-9f23f4c2374f/ENCFF346DYM.bigBed\ labelFields none\ longLabel GM12878 ZBTB40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189YYK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF346DYM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF895ERR ENCSR254YRM Peak bigBed 5 Liver tissue female child 6 years and with nonobstructive coronary artery disease liver tissue male adult 32 years CTCF peak 4 2083 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/00235872-5a19-4efc-8d76-8a5d43332296/ENCFF895ERR.bigBed\ color 0,176,240\ labelFields none\ longLabel Liver tissue female child 6 years and with nonobstructive coronary artery disease liver tissue male adult 32 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR254YRM Peak\ track wgEncodeReg4Epigenetics_ENCFF895ERR\ type bigBed 5\ visibility squish\ CD14MonocytesDonor2_CNhs11954_ctss_rev Cd14+MoD2- bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse 0 2084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor2_CNhs11954_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor2_CNhs11954_tpm_rev Cd14+MoD2- bigWig CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse 1 2084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor2.CNhs11954.11305-117B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor2_CNhs11954_11305-117B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11305-117B9 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor2_CNhs11954_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11305-117B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF421NUI ENCSR189YYK Signal bigWig GM12878 ZBTB40 ENCSR189YYK signal 2 2084 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/79a6dc16-78dd-470c-a51b-e4dc1e1ca1b2/ENCFF421NUI.bigWig\ color 254,75,173\ longLabel GM12878 ZBTB40 ENCSR189YYK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR189YYK Signal\ track wgEncodeReg4TfChip_ENCFF421NUI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF725LBV ENCSR254YRM Signal bigWig Liver tissue female child 6 years and with nonobstructive coronary artery disease liver tissue male adult 32 years CTCF signal 2 2084 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/004d5c8c-f1aa-4fd4-93e0-1746c7036509/ENCFF725LBV.bigWig\ color 0,176,240\ longLabel Liver tissue female child 6 years and with nonobstructive coronary artery disease liver tissue male adult 32 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR254YRM Signal\ track wgEncodeReg4Epigenetics_ENCFF725LBV\ type bigWig\ visibility full\ CD14MonocytesDonor3_CNhs11997_ctss_fwd Cd14+MoD3+ bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward 0 2085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor3_CNhs11997_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_tpm_fwd Cd14+MoD3+ bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward 1 2085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesDonor3_CNhs11997_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF134ORZ ENCSR190BZA Peak bigBed 5 Chondrocyte CTCF peaks 4 2085 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/3a17cf0b-7322-447e-9f58-636b20078492/ENCFF134ORZ.bigBed\ labelFields none\ longLabel Chondrocyte CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR190BZA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF134ORZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF620MAT ENCSR255SQR Peak bigBed 5 Left lung tissue male adult 40 years CTCF peak 4 2085 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/eb875732-9629-4282-9aaa-2dbecf696ab3/ENCFF620MAT.bigBed\ color 0,176,240\ labelFields none\ longLabel Left lung tissue male adult 40 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR255SQR Peak\ track wgEncodeReg4Epigenetics_ENCFF620MAT\ type bigBed 5\ visibility squish\ CD14MonocytesDonor3_CNhs11997_ctss_rev Cd14+MoD3- bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse 0 2086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor3_CNhs11997_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ CD14MonocytesDonor3_CNhs11997_tpm_rev Cd14+MoD3- bigWig CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse 1 2086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20Monocytes%2c%20donor3.CNhs11997.11381-118B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ Monocytes, donor3_CNhs11997_11381-118B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11381-118B4 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd14+MoD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesDonor3_CNhs11997_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11381-118B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF044ORH ENCSR190BZA Signal bigWig Chondrocyte CTCF ENCSR190BZA signal 2 2086 138 135 169 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/b2b7bfb0-6b63-428f-bdc2-8414bf726a4a/ENCFF044ORH.bigWig\ color 138,135,169\ longLabel Chondrocyte CTCF ENCSR190BZA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR190BZA Signal\ track wgEncodeReg4TfChip_ENCFF044ORH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF002ZEZ ENCSR255SQR Signal bigWig Left lung tissue male adult 40 years CTCF signal 2 2086 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4bb87388-3add-4c38-9b6b-cd1f6b3dc31c/ENCFF002ZEZ.bigWig\ color 0,176,240\ longLabel Left lung tissue male adult 40 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR255SQR Signal\ track wgEncodeReg4Epigenetics_ENCFF002ZEZ\ type bigWig\ visibility full\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_fwd Cd14+MoEndothelialProgenitorCellsD1+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward 0 2087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_fwd Cd14+MoEndothelialProgenitorCellsD1+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward 1 2087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF834RVE ENCSR190GIW Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2 NR5A2 peaks 4 2087 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/ca5f204e-f22f-432b-943d-1590414865f2/ENCFF834RVE.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2 NR5A2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR190GIW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF834RVE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF312WCI ENCSR257BGZ Peak bigBed 5 ACHN DNase peak 4 2087 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/884142dc-c1e2-4086-b3a0-63d713c9c678/ENCFF312WCI.bigBed\ color 6,218,147\ labelFields none\ longLabel ACHN DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR257BGZ Peak\ track wgEncodeReg4Epigenetics_ENCFF312WCI\ type bigBed 5\ visibility squish\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_rev Cd14+MoEndothelialProgenitorCellsD1- bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse 0 2088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_rev Cd14+MoEndothelialProgenitorCellsD1- bigWig CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse 1 2088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.CNhs10858.11229-116C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor1_CNhs10858_11229-116C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11229-116C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor1_CNhs10858_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11229-116C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF585LXB ENCSR190GIW Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2 NR5A2 ENCSR190GIW signal 2 2088 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/12fa74c4-1daf-4e4a-a895-c91e9da5ba45/ENCFF585LXB.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2 NR5A2 ENCSR190GIW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR190GIW Signal\ track wgEncodeReg4TfChip_ENCFF585LXB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF783EDL ENCSR257BGZ Signal bigWig ACHN DNase signal 2 2088 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/5b52671c-a595-44f4-8281-1e75243d65c7/ENCFF783EDL.bigWig\ color 6,218,147\ longLabel ACHN DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR257BGZ Signal\ track wgEncodeReg4Epigenetics_ENCFF783EDL\ type bigWig\ visibility full\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_fwd Cd14+MoEndothelialProgenitorCellsD2+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward 0 2089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_fwd Cd14+MoEndothelialProgenitorCellsD2+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward 1 2089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF054OSA ENCSR191TLD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF5A PHF5A peaks 4 2089 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/345b8f33-bb2e-41fd-9d15-50df035b2b7a/ENCFF054OSA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF5A PHF5A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR191TLD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF054OSA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF570GWB ENCSR257CIZ Peak bigBed 5 Kidney tubule cell female adult 80 years treated with 5 μM cisplatin DNase peak 4 2089 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/1632dda6-7541-44ba-a802-169feffb4a62/ENCFF570GWB.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tubule cell female adult 80 years treated with 5 μM cisplatin DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR257CIZ Peak\ track wgEncodeReg4Epigenetics_ENCFF570GWB\ type bigBed 5\ visibility squish\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_rev Cd14+MoEndothelialProgenitorCellsD2- bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse 0 2090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_rev Cd14+MoEndothelialProgenitorCellsD2- bigWig CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse 1 2090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor2.CNhs11897.11310-117C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor2_CNhs11897_11310-117C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11310-117C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor2_CNhs11897_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11310-117C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF479SCT ENCSR191TLD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF5A PHF5A ENCSR191TLD signal 2 2090 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e42502f6-6fe9-442a-9378-27443d5450d2/ENCFF479SCT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF5A PHF5A ENCSR191TLD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR191TLD Signal\ track wgEncodeReg4TfChip_ENCFF479SCT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF445HCH ENCSR257CIZ Signal bigWig Kidney tubule cell female adult 80 years treated with 5 μM cisplatin DNase signal 2 2090 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/a20ad170-5157-4d12-9635-6e68ffbf57b8/ENCFF445HCH.bigWig\ color 6,218,147\ longLabel Kidney tubule cell female adult 80 years treated with 5 μM cisplatin DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR257CIZ Signal\ track wgEncodeReg4Epigenetics_ENCFF445HCH\ type bigWig\ visibility full\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_fwd Cd14+MoEndothelialProgenitorCellsD3+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward 0 2091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_fwd Cd14+MoEndothelialProgenitorCellsD3+ bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward 1 2091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF033MGF ENCSR192AFN Peak bigBed 5 GM12878 PAX8 peaks 4 2091 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/cd735069-5faf-4789-8a8a-778110fdbdfd/ENCFF033MGF.bigBed\ labelFields none\ longLabel GM12878 PAX8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR192AFN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF033MGF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF203MMM ENCSR257VEO Peak bigBed 5 Middle frontal area 46 tissue male adult 82 years H3K4me3 peak 4 2091 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/d6b69a90-ec37-499a-a781-2365d5075058/ENCFF203MMM.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 82 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR257VEO Peak\ track wgEncodeReg4Epigenetics_ENCFF203MMM\ type bigBed 5\ visibility squish\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_rev Cd14+MoEndothelialProgenitorCellsD3- bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse 0 2092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_rev Cd14+MoEndothelialProgenitorCellsD3- bigWig CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse 1 2092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor3.CNhs11904.11386-118B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocyte derived endothelial progenitor cells, donor3_CNhs11904_11386-118B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11386-118B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoEndothelialProgenitorCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocyteDerivedEndothelialProgenitorCellsDonor3_CNhs11904_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11386-118B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF759BRU ENCSR192AFN Signal bigWig GM12878 PAX8 ENCSR192AFN signal 2 2092 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/095309ba-9646-49d8-94ab-2300a5fe9b08/ENCFF759BRU.bigWig\ color 254,75,173\ longLabel GM12878 PAX8 ENCSR192AFN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR192AFN Signal\ track wgEncodeReg4TfChip_ENCFF759BRU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF546VCE ENCSR257VEO Signal bigWig Middle frontal area 46 tissue male adult 82 years H3K4me3 signal 2 2092 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/a2fbaee4-8bfc-4702-a36c-1f8606234057/ENCFF546VCE.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 82 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR257VEO Signal\ track wgEncodeReg4Epigenetics_ENCFF546VCE\ type bigWig\ visibility full\ CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_fwd Cd14+MoMockTreatedD1+ bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward 0 2093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_fwd Cd14+MoMockTreatedD1+ bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward 1 2093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF846DUV ENCSR192PBJ Peak bigBed 5 A549 JUN peaks 4 2093 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/31/78c96f07-9101-482f-9f97-03f7bd40dc2e/ENCFF846DUV.bigBed\ labelFields none\ longLabel A549 JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR192PBJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF846DUV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF122ZUY ENCSR258IBL Peak bigBed 5 Left renal pelvis tissue male embryo 105 days DNase peak 4 2093 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/0c82929f-cc53-40db-be84-865b658ca467/ENCFF122ZUY.bigBed\ color 6,218,147\ labelFields none\ longLabel Left renal pelvis tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258IBL Peak\ track wgEncodeReg4Epigenetics_ENCFF122ZUY\ type bigBed 5\ visibility squish\ CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_rev Cd14+MoMockTreatedD1- bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse 0 2094 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor1_CNhs13468_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_rev Cd14+MoMockTreatedD1- bigWig CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse 1 2094 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor1.CNhs13468.11863-125A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor1_CNhs13468_11863-125A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11863-125A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor1_CNhs13468_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11863-125A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF454QIB ENCSR192PBJ Signal bigWig A549 JUN ENCSR192PBJ signal 2 2094 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/31/6e7b8a03-9cb9-4866-9210-547899f877e1/ENCFF454QIB.bigWig\ color 130,163,45\ longLabel A549 JUN ENCSR192PBJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR192PBJ Signal\ track wgEncodeReg4TfChip_ENCFF454QIB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF466OTS ENCSR258IBL Signal bigWig Left renal pelvis tissue male embryo 105 days DNase signal 2 2094 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/25b35a0f-2ff7-4cd2-9f22-9763612db2fa/ENCFF466OTS.bigWig\ color 6,218,147\ longLabel Left renal pelvis tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258IBL Signal\ track wgEncodeReg4Epigenetics_ENCFF466OTS\ type bigWig\ visibility full\ CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_fwd Cd14+MoMockTreatedD2+ bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward 0 2095 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_fwd Cd14+MoMockTreatedD2+ bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward 1 2095 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF261MIW ENCSR192SKV Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 peaks 4 2095 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/6610a74f-235f-4faf-b970-fba36e1c087f/ENCFF261MIW.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR192SKV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF261MIW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF276MUO ENCSR258JCL Peak bigBed 5 Gastrocnemius medialis tissue male adult 37 years ATAC peak 4 2095 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/d019b7e9-5de6-4565-a538-68e38251fde5/ENCFF276MUO.bigBed\ color 2,199,185\ longLabel Gastrocnemius medialis tissue male adult 37 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258JCL Peak\ track wgEncodeReg4Epigenetics_ENCFF276MUO\ type bigBed 5\ visibility squish\ CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_rev Cd14+MoMockTreatedD2- bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse 0 2096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor2_CNhs13484_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_rev Cd14+MoMockTreatedD2- bigWig CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse 1 2096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor2.CNhs13484.11873-125C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor2_CNhs13484_11873-125C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11873-125C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor2_CNhs13484_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11873-125C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF737UUH ENCSR192SKV Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 ENCSR192SKV signal 2 2096 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/097fdacb-43d7-49ec-94d7-5da2c91b9b50/ENCFF737UUH.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 ENCSR192SKV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR192SKV Signal\ track wgEncodeReg4TfChip_ENCFF737UUH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF703MFP ENCSR258JCL Signal bigWig Gastrocnemius medialis tissue male adult 37 years ATAC signal 2 2096 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/4dd926e2-d345-4a35-a128-948f1c49223f/ENCFF703MFP.bigWig\ color 2,199,185\ longLabel Gastrocnemius medialis tissue male adult 37 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258JCL Signal\ track wgEncodeReg4Epigenetics_ENCFF703MFP\ type bigWig\ visibility full\ CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_fwd Cd14+MoMockTreatedD3+ bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward 0 2097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_fwd Cd14+MoMockTreatedD3+ bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward 1 2097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF878HLP ENCSR193ADW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1 SETDB1 peaks 4 2097 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/5e6e25c7-2bb9-4b07-aa6e-43d8d961cb2c/ENCFF878HLP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1 SETDB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR193ADW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF878HLP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF153IWJ ENCSR258POP Peak bigBed 5 Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 2097 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/1ebd2f25-bbc5-4534-b767-debf6b9224f8/ENCFF153IWJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258POP Peak\ track wgEncodeReg4Epigenetics_ENCFF153IWJ\ type bigBed 5\ visibility squish\ CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_rev Cd14+MoMockTreatedD3- bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse 0 2098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoMockTreatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor3_CNhs13491_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_rev Cd14+MoMockTreatedD3- bigWig CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse 1 2098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20mock%20treated%2c%20donor3.CNhs13491.11883-125D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - mock treated, donor3_CNhs13491_11883-125D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11883-125D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoMockTreatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesMockTreatedDonor3_CNhs13491_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11883-125D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF122RAF ENCSR193ADW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1 SETDB1 ENCSR193ADW signal 2 2098 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/1cb567dc-4b8e-4585-814e-73a31fadb3e3/ENCFF122RAF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1 SETDB1 ENCSR193ADW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR193ADW Signal\ track wgEncodeReg4TfChip_ENCFF122RAF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF681IJJ ENCSR258POP Signal bigWig Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 2098 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/06352547-3ebf-4c35-8d76-85ea36eae639/ENCFF681IJJ.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258POP Signal\ track wgEncodeReg4Epigenetics_ENCFF681IJJ\ type bigWig\ visibility full\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_fwd Cd14+MoW/B-glucanD1+ bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward 0 2099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_fwd Cd14+MoW/B-glucanD1+ bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward 1 2099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF264AHX ENCSR193NSH Peak bigBed 5 A549 RAD21 peaks 4 2099 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/31/e3aadc20-084b-4792-a69f-07c7fb685472/ENCFF264AHX.bigBed\ labelFields none\ longLabel A549 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR193NSH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF264AHX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF464HRU ENCSR258RSH Peak bigBed 5 T-cell male adult 38 years ATAC peak 4 2099 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/33277044-40f5-4ae4-8603-ff06612ad4d2/ENCFF464HRU.bigBed\ color 2,199,185\ longLabel T-cell male adult 38 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258RSH Peak\ track wgEncodeReg4Epigenetics_ENCFF464HRU\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_rev Cd14+MoW/B-glucanD1- bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse 0 2100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_rev Cd14+MoW/B-glucanD1- bigWig CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse 1 2100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor1.CNhs13474.11869-125B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor1_CNhs13474_11869-125B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11869-125B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor1_CNhs13474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11869-125B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF959BTR ENCSR193NSH Signal bigWig A549 RAD21 ENCSR193NSH signal 2 2100 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/31/666e8ac8-39e8-4cbe-8a44-4d8d4222bcca/ENCFF959BTR.bigWig\ color 130,163,45\ longLabel A549 RAD21 ENCSR193NSH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR193NSH Signal\ track wgEncodeReg4TfChip_ENCFF959BTR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF677BPI ENCSR258RSH Signal bigWig T-cell male adult 38 years ATAC signal 2 2100 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/45bd0184-5fbb-4f89-9014-62b117fb0f8b/ENCFF677BPI.bigWig\ color 2,199,185\ longLabel T-cell male adult 38 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258RSH Signal\ track wgEncodeReg4Epigenetics_ENCFF677BPI\ type bigWig\ visibility full\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_fwd Cd14+MoW/B-glucanD2+ bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward 0 2101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_fwd Cd14+MoW/B-glucanD2+ bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward 1 2101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF018XUY ENCSR193ZLW Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP7 THAP7 peaks 4 2101 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/57d735fe-a490-4e5c-a3e1-a660d0abe66c/ENCFF018XUY.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP7 THAP7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR193ZLW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF018XUY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF642JYQ ENCSR258RXP Peak bigBed 5 T-cell male adult 38 years H3K4me3 peak 4 2101 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/906a8cbe-dfd1-453e-9373-9606e895c6b9/ENCFF642JYQ.bigBed\ color 255,0,0\ longLabel T-cell male adult 38 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258RXP Peak\ track wgEncodeReg4Epigenetics_ENCFF642JYQ\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_rev Cd14+MoW/B-glucanD2- bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse 0 2102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_rev Cd14+MoW/B-glucanD2- bigWig CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse 1 2102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor2.CNhs13489.11879-125C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor2_CNhs13489_11879-125C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11879-125C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor2_CNhs13489_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11879-125C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF714UYV ENCSR193ZLW Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP7 THAP7 ENCSR193ZLW signal 2 2102 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/01cb10d1-cd02-4449-8386-ed439bd0d75c/ENCFF714UYV.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP7 THAP7 ENCSR193ZLW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR193ZLW Signal\ track wgEncodeReg4TfChip_ENCFF714UYV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF896VDJ ENCSR258RXP Signal bigWig T-cell male adult 38 years H3K4me3 signal 2 2102 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d70e9877-3042-4542-bdb1-5bc269962970/ENCFF896VDJ.bigWig\ color 255,0,0\ longLabel T-cell male adult 38 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258RXP Signal\ track wgEncodeReg4Epigenetics_ENCFF896VDJ\ type bigWig\ visibility full\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_fwd Cd14+MoW/B-glucanD3+ bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward 0 2103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_fwd Cd14+MoW/B-glucanD3+ bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward 1 2103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF348LDO ENCSR194IJN Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 peaks 4 2103 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6c181a70-c20f-4170-bc6d-2fae8388b549/ENCFF348LDO.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR194IJN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF348LDO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF231REB ENCSR258UUX Peak bigBed 5 Vagina tissue female adult 53 years H3K4me3 peak 4 2103 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/c70d5637-bfb6-43d9-a370-fe72efc03292/ENCFF231REB.bigBed\ color 255,0,0\ longLabel Vagina tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258UUX Peak\ track wgEncodeReg4Epigenetics_ENCFF231REB\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_rev Cd14+MoW/B-glucanD3- bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse 0 2104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/B-glucanD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_rev Cd14+MoW/B-glucanD3- bigWig CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse 1 2104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20B-glucan%2c%20donor3.CNhs13495.11889-125D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with B-glucan, donor3_CNhs13495_11889-125D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11889-125D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/B-glucanD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBglucanDonor3_CNhs13495_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11889-125D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF766UON ENCSR194IJN Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 ENCSR194IJN signal 2 2104 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/50e67cae-6420-47fe-a7fa-39b3a3b9ec7a/ENCFF766UON.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 ENCSR194IJN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR194IJN Signal\ track wgEncodeReg4TfChip_ENCFF766UON\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF379GSJ ENCSR258UUX Signal bigWig Vagina tissue female adult 53 years H3K4me3 signal 2 2104 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/6d4ab03e-9078-43f6-883e-bdfe51a54717/ENCFF379GSJ.bigWig\ color 255,0,0\ longLabel Vagina tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR258UUX Signal\ track wgEncodeReg4Epigenetics_ENCFF379GSJ\ type bigWig\ visibility full\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_fwd Cd14+MoW/BcgD1+ bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward 0 2105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_fwd Cd14+MoW/BcgD1+ bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward 1 2105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF957BIY ENCSR194NVP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF1 MTF1 peaks 4 2105 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/32f1298c-9eca-4c36-be8c-fbf31c266bfd/ENCFF957BIY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF1 MTF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR194NVP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF957BIY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF780QRK ENCSR259EBS Peak bigBed 5 IgD-negative memory B cell H3K4me3 peak 4 2105 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/6b1ccaab-465f-4671-afa5-7779beffbe8b/ENCFF780QRK.bigBed\ color 255,0,0\ longLabel IgD-negative memory B cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259EBS Peak\ track wgEncodeReg4Epigenetics_ENCFF780QRK\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_rev Cd14+MoW/BcgD1- bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse 0 2106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_rev Cd14+MoW/BcgD1- bigWig CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse 1 2106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor1.CNhs13465.11860-125A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor1_CNhs13465_11860-125A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11860-125A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor1_CNhs13465_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11860-125A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF119IFW ENCSR194NVP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF1 MTF1 ENCSR194NVP signal 2 2106 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/6a268478-c5aa-4afb-853b-ff267301315f/ENCFF119IFW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF1 MTF1 ENCSR194NVP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR194NVP Signal\ track wgEncodeReg4TfChip_ENCFF119IFW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF514MWD ENCSR259EBS Signal bigWig IgD-negative memory B cell H3K4me3 signal 2 2106 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/0fe0a83c-e564-4ad6-8adf-c29e653853f0/ENCFF514MWD.bigWig\ color 255,0,0\ longLabel IgD-negative memory B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259EBS Signal\ track wgEncodeReg4Epigenetics_ENCFF514MWD\ type bigWig\ visibility full\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_fwd Cd14+MoW/BcgD2+ bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward 0 2107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_fwd Cd14+MoW/BcgD2+ bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward 1 2107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF972IQB ENCSR194WQV Peak bigBed 5 Nephron organoid female embryo (5 days): 49 days post differentiation CTCF peaks 4 2107 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/20/f3b3f21f-782f-44af-919a-332e8922a2b4/ENCFF972IQB.bigBed\ labelFields none\ longLabel Nephron organoid female embryo (5 days): 49 days post differentiation CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR194WQV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF972IQB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF619VWJ ENCSR259FEJ Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K27ac peak 4 2107 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/22d0ab64-e84b-45c8-b553-92c829057093/ENCFF619VWJ.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259FEJ Peak\ track wgEncodeReg4Epigenetics_ENCFF619VWJ\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_rev Cd14+MoW/BcgD2- bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse 0 2108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_rev Cd14+MoW/BcgD2- bigWig CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse 1 2108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor2.CNhs13475.11870-125B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor2_CNhs13475_11870-125B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11870-125B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor2_CNhs13475_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11870-125B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF923LDW ENCSR194WQV Signal bigWig Nephron organoid female embryo (5 days): 49 days post differentiation CTCF ENCSR194WQV signal 2 2108 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/20/40668882-cb70-43b0-a2b9-25252c60a833/ENCFF923LDW.bigWig\ color 92,161,153\ longLabel Nephron organoid female embryo (5 days): 49 days post differentiation CTCF ENCSR194WQV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR194WQV Signal\ track wgEncodeReg4TfChip_ENCFF923LDW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF639YOF ENCSR259FEJ Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K27ac signal 2 2108 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/b92fe7ed-5236-418e-8a86-20e527fc8e17/ENCFF639YOF.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259FEJ Signal\ track wgEncodeReg4Epigenetics_ENCFF639YOF\ type bigWig\ visibility full\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_fwd Cd14+MoW/BcgD3+ bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward 0 2109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_fwd Cd14+MoW/BcgD3+ bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward 1 2109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF906NCV ENCSR195POA Peak bigBed 5 Lower lobe of left lung tissue male adult (60 years) CTCF peaks 4 2109 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5d808e7f-2edf-48d3-8a36-9ae6811056d6/ENCFF906NCV.bigBed\ labelFields none\ longLabel Lower lobe of left lung tissue male adult (60 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR195POA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF906NCV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF210NGP ENCSR259GYP Peak bigBed 5 Adrenal gland tissue female adult 51 years DNase peak 4 2109 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/9f54818d-12de-45d9-b27c-fdef41766a62/ENCFF210NGP.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259GYP Peak\ track wgEncodeReg4Epigenetics_ENCFF210NGP\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_rev Cd14+MoW/BcgD3- bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse 0 2110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/BcgD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_rev Cd14+MoW/BcgD3- bigWig CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse 1 2110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20BCG%2c%20donor3.CNhs13543.11880-125C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with BCG, donor3_CNhs13543_11880-125C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11880-125C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/BcgD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithBCGDonor3_CNhs13543_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11880-125C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF812ODW ENCSR195POA Signal bigWig Lower lobe of left lung tissue male adult (60 years) CTCF ENCSR195POA signal 2 2110 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/76cb5566-e8f3-4dc6-9f59-0296c1163903/ENCFF812ODW.bigWig\ color 130,163,45\ longLabel Lower lobe of left lung tissue male adult (60 years) CTCF ENCSR195POA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR195POA Signal\ track wgEncodeReg4TfChip_ENCFF812ODW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF693WYZ ENCSR259GYP Signal bigWig Adrenal gland tissue female adult 51 years DNase signal 2 2110 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/adf5cb48-b603-49aa-ab64-878166e7ecff/ENCFF693WYZ.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259GYP Signal\ track wgEncodeReg4Epigenetics_ENCFF693WYZ\ type bigWig\ visibility full\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_fwd Cd14+MoW/CandidaD1+ bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward 0 2111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_fwd Cd14+MoW/CandidaD1+ bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward 1 2111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF540WBG ENCSR195QFV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 peaks 4 2111 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/26eeb287-d3ca-43c7-b728-d4b1b100225d/ENCFF540WBG.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR195QFV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF540WBG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF668LTU ENCSR259HTB Peak bigBed 5 K562 treated with 1 μM AR-42 for 24 hours ATAC peak 4 2111 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/9c2fcf99-2bff-4ea1-aa2e-e06d27cb4a80/ENCFF668LTU.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259HTB Peak\ track wgEncodeReg4Epigenetics_ENCFF668LTU\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_rev Cd14+MoW/CandidaD1- bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse 0 2112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_rev Cd14+MoW/CandidaD1- bigWig CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse 1 2112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor1.CNhs13473.11868-125B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor1_CNhs13473_11868-125B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11868-125B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor1_CNhs13473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11868-125B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF919TET ENCSR195QFV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 ENCSR195QFV signal 2 2112 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/0442e55d-b64a-4608-ac45-d4bd46b3056e/ENCFF919TET.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF3 ZNF3 ENCSR195QFV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR195QFV Signal\ track wgEncodeReg4TfChip_ENCFF919TET\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF285XBD ENCSR259HTB Signal bigWig K562 treated with 1 μM AR-42 for 24 hours ATAC signal 2 2112 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/e154a7d5-f210-470d-8f85-3a043ad6c28a/ENCFF285XBD.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259HTB Signal\ track wgEncodeReg4Epigenetics_ENCFF285XBD\ type bigWig\ visibility full\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_fwd Cd14+MoW/CandidaD2+ bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward 0 2113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_fwd Cd14+MoW/CandidaD2+ bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward 1 2113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF665HBX ENCSR196FSX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82 ZFP82 peaks 4 2113 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/777f2f48-f4ae-4cc1-bcf6-a6313fd4c114/ENCFF665HBX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82 ZFP82 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR196FSX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF665HBX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF476NBQ ENCSR259PNW Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 88 years CTCF peak 4 2113 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/c30fd8db-4a3d-48a2-b792-29d4d11fa8d8/ENCFF476NBQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 88 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259PNW Peak\ track wgEncodeReg4Epigenetics_ENCFF476NBQ\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_rev Cd14+MoW/CandidaD2- bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse 0 2114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_rev Cd14+MoW/CandidaD2- bigWig CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse 1 2114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor2.CNhs13488.11878-125C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor2_CNhs13488_11878-125C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11878-125C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor2_CNhs13488_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11878-125C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF113ACP ENCSR196FSX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82 ZFP82 ENCSR196FSX signal 2 2114 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/f2e27a99-d1ba-4e47-b00d-677ba7c281aa/ENCFF113ACP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82 ZFP82 ENCSR196FSX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR196FSX Signal\ track wgEncodeReg4TfChip_ENCFF113ACP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF302UYV ENCSR259PNW Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 88 years CTCF signal 2 2114 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/0d37d6e6-2ccd-4da9-b83e-c90594ed834d/ENCFF302UYV.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 88 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259PNW Signal\ track wgEncodeReg4Epigenetics_ENCFF302UYV\ type bigWig\ visibility full\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_fwd Cd14+MoW/CandidaD3+ bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward 0 2115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_fwd Cd14+MoW/CandidaD3+ bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward 1 2115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF557PGE ENCSR196HGZ Peak bigBed 5 Liver tissue female child (4 years) JUND peaks 4 2115 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/49890ba3-621e-44b6-afce-cb49a85e5d28/ENCFF557PGE.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR196HGZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF557PGE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF878SHN ENCSR259VGN Peak bigBed 5 Neural progenitor cell H3K4me3 peak 4 2115 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/5b1fa67a-d62b-4161-ac02-8f8a6a73185d/ENCFF878SHN.bigBed\ color 255,0,0\ longLabel Neural progenitor cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259VGN Peak\ track wgEncodeReg4Epigenetics_ENCFF878SHN\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_rev Cd14+MoW/CandidaD3- bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse 0 2116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CandidaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_rev Cd14+MoW/CandidaD3- bigWig CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse 1 2116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Candida%2c%20donor3.CNhs13494.11888-125D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Candida, donor3_CNhs13494_11888-125D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11888-125D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CandidaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCandidaDonor3_CNhs13494_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11888-125D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF809ERV ENCSR196HGZ Signal bigWig Liver tissue female child (4 years) JUND ENCSR196HGZ signal 2 2116 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/f8e255de-a178-4ba0-87e6-10590f144c8e/ENCFF809ERV.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) JUND ENCSR196HGZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR196HGZ Signal\ track wgEncodeReg4TfChip_ENCFF809ERV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF034NYB ENCSR259VGN Signal bigWig Neural progenitor cell H3K4me3 signal 2 2116 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/36ba7c92-d23a-4e24-a153-636f778bd40b/ENCFF034NYB.bigWig\ color 255,0,0\ longLabel Neural progenitor cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR259VGN Signal\ track wgEncodeReg4Epigenetics_ENCFF034NYB\ type bigWig\ visibility full\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_fwd Cd14+MoW/CryptococcusD1+ bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward 0 2117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_fwd Cd14+MoW/CryptococcusD1+ bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward 1 2117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF086GTI ENCSR196HOM Peak bigBed 5 Epithelial cell of prostate male CTCF peaks 4 2117 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/352c948d-d89c-4780-b3ba-dd7d8e4d1d04/ENCFF086GTI.bigBed\ labelFields none\ longLabel Epithelial cell of prostate male CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR196HOM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF086GTI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF733GAY ENCSR260CRI Peak bigBed 5 Multiple sclerosis naive B cell H3K4me3 peak 4 2117 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/7b0f5ad0-a7b9-46fb-ac6f-539afbcd351c/ENCFF733GAY.bigBed\ color 255,0,0\ longLabel Multiple sclerosis naive B cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260CRI Peak\ track wgEncodeReg4Epigenetics_ENCFF733GAY\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_rev Cd14+MoW/CryptococcusD1- bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse 0 2118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_rev Cd14+MoW/CryptococcusD1- bigWig CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse 1 2118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor1.CNhs13472.11867-125B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor1_CNhs13472_11867-125B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11867-125B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor1_CNhs13472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11867-125B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF354RCZ ENCSR196HOM Signal bigWig Epithelial cell of prostate male CTCF ENCSR196HOM signal 2 2118 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/87fbdcf0-a7dd-4f7f-924e-9009e915781f/ENCFF354RCZ.bigWig\ color 140,140,140\ longLabel Epithelial cell of prostate male CTCF ENCSR196HOM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR196HOM Signal\ track wgEncodeReg4TfChip_ENCFF354RCZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF780NTN ENCSR260CRI Signal bigWig Multiple sclerosis naive B cell H3K4me3 signal 2 2118 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/eb0195a0-cf9c-451a-95f5-b896c2131c72/ENCFF780NTN.bigWig\ color 255,0,0\ longLabel Multiple sclerosis naive B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260CRI Signal\ track wgEncodeReg4Epigenetics_ENCFF780NTN\ type bigWig\ visibility full\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_fwd Cd14+MoW/CryptococcusD2+ bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward 0 2119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_fwd Cd14+MoW/CryptococcusD2+ bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward 1 2119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF682FBH ENCSR197ALX Peak bigBed 5 K562 HDGF peaks 4 2119 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/b954b07b-8d02-40c9-871d-306f02a61d87/ENCFF682FBH.bigBed\ labelFields none\ longLabel K562 HDGF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR197ALX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF682FBH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF581WPG ENCSR260FAS Peak bigBed 5 Neural progenitor cell CTCF peak 4 2119 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/feff6589-b2f4-4605-9fb1-7c457d4e102d/ENCFF581WPG.bigBed\ color 0,176,240\ labelFields none\ longLabel Neural progenitor cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260FAS Peak\ track wgEncodeReg4Epigenetics_ENCFF581WPG\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_rev Cd14+MoW/CryptococcusD2- bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse 0 2120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_rev Cd14+MoW/CryptococcusD2- bigWig CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse 1 2120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor2.CNhs13487.11877-125C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor2_CNhs13487_11877-125C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11877-125C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor2_CNhs13487_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11877-125C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF254QOR ENCSR197DJH Peak bigBed 5 MCF-7 SREBF1 peaks 4 2120 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/040d44e7-8148-4da7-b3c9-94dc1caffcea/ENCFF254QOR.bigBed\ labelFields none\ longLabel MCF-7 SREBF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR197DJH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF254QOR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF900FBY ENCSR260FAS Signal bigWig Neural progenitor cell CTCF signal 2 2120 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/541dbc8c-741d-45e0-a4fe-43c2965816ce/ENCFF900FBY.bigWig\ color 0,176,240\ longLabel Neural progenitor cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260FAS Signal\ track wgEncodeReg4Epigenetics_ENCFF900FBY\ type bigWig\ visibility full\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_fwd Cd14+MoW/CryptococcusD3+ bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward 0 2121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_fwd Cd14+MoW/CryptococcusD3+ bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward 1 2121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF513GWQ ENCSR197DJH Signal bigWig MCF-7 SREBF1 ENCSR197DJH signal 2 2121 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a3cb34e7-528b-48f7-a382-0e17a4a89d82/ENCFF513GWQ.bigWig\ color 65,171,173\ longLabel MCF-7 SREBF1 ENCSR197DJH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR197DJH Signal\ track wgEncodeReg4TfChip_ENCFF513GWQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF267OCY ENCSR260SWI Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak 4 2121 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/5ee999a2-1ff7-4061-820e-e8ce0aba61a8/ENCFF267OCY.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260SWI Peak\ track wgEncodeReg4Epigenetics_ENCFF267OCY\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_rev Cd14+MoW/CryptococcusD3- bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse 0 2122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/CryptococcusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_rev Cd14+MoW/CryptococcusD3- bigWig CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse 1 2122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Cryptococcus%2c%20donor3.CNhs13546.11887-125D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Cryptococcus, donor3_CNhs13546_11887-125D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11887-125D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/CryptococcusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithCryptococcusDonor3_CNhs13546_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11887-125D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF059WEE ENCSR197WGI Peak bigBed 5 IMR-90 NFE2L2 peaks 4 2122 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/334e3eea-bf31-4a62-949a-e7010dea8916/ENCFF059WEE.bigBed\ labelFields none\ longLabel IMR-90 NFE2L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR197WGI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF059WEE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF243DOC ENCSR260SWI Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal 2 2122 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/caa1b217-11a3-457a-a8a5-4141eb918530/ENCFF243DOC.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260SWI Signal\ track wgEncodeReg4Epigenetics_ENCFF243DOC\ type bigWig\ visibility full\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_fwd Cd14+MoW/GroupAStreptococciD1+ bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward 0 2123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_fwd Cd14+MoW/GroupAStreptococciD1+ bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward 1 2123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF392PIY ENCSR197WGI Signal bigWig IMR-90 NFE2L2 ENCSR197WGI signal 2 2123 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/65629911-ae9f-4dcb-8795-8d093c679d14/ENCFF392PIY.bigWig\ color 130,163,45\ longLabel IMR-90 NFE2L2 ENCSR197WGI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR197WGI Signal\ track wgEncodeReg4TfChip_ENCFF392PIY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF465BDC ENCSR260UJJ Peak bigBed 5 T-helper 1 cell male adult 42 years DNase peak 4 2123 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/1ed2cfa5-cce4-408e-97d1-18da862b23d0/ENCFF465BDC.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell male adult 42 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260UJJ Peak\ track wgEncodeReg4Epigenetics_ENCFF465BDC\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_rev Cd14+MoW/GroupAStreptococciD1- bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse 0 2124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_rev Cd14+MoW/GroupAStreptococciD1- bigWig CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse 1 2124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor1.CNhs13469.11864-125B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor1_CNhs13469_11864-125B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11864-125B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor1_CNhs13469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11864-125B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF175OGG ENCSR198BHH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550 ZNF550 peaks 4 2124 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/9af5e4e7-a751-43ba-8aec-1fd7c24c634b/ENCFF175OGG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550 ZNF550 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR198BHH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF175OGG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF043TCU ENCSR260UJJ Signal bigWig T-helper 1 cell male adult 42 years DNase signal 2 2124 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/1208d924-c231-4315-8674-a1f84e9b1a75/ENCFF043TCU.bigWig\ color 6,218,147\ longLabel T-helper 1 cell male adult 42 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260UJJ Signal\ track wgEncodeReg4Epigenetics_ENCFF043TCU\ type bigWig\ visibility full\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_fwd Cd14+MoW/GroupAStreptococciD2+ bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward 0 2125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_fwd Cd14+MoW/GroupAStreptococciD2+ bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward 1 2125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF991KIG ENCSR198BHH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550 ZNF550 ENCSR198BHH signal 2 2125 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/6d2f1980-3624-4109-9b14-f01234152385/ENCFF991KIG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550 ZNF550 ENCSR198BHH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR198BHH Signal\ track wgEncodeReg4TfChip_ENCFF991KIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF832WUJ ENCSR260ZIV Peak bigBed 5 Gastroesophageal sphincter tissue female adult 51 years ATAC peak 4 2125 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/b1da08a2-1b12-4f24-b557-34b3478108fc/ENCFF832WUJ.bigBed\ color 2,199,185\ longLabel Gastroesophageal sphincter tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260ZIV Peak\ track wgEncodeReg4Epigenetics_ENCFF832WUJ\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_rev Cd14+MoW/GroupAStreptococciD2- bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse 0 2126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_rev Cd14+MoW/GroupAStreptococciD2- bigWig CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse 1 2126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor2.CNhs13532.11874-125C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor2_CNhs13532_11874-125C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11874-125C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor2_CNhs13532_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11874-125C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF449SAF ENCSR198RHC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782 ZNF782 peaks 4 2126 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/a304cb3f-f98f-4ca3-b11b-5e96cfe3058a/ENCFF449SAF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782 ZNF782 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR198RHC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF449SAF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF234HJK ENCSR260ZIV Signal bigWig Gastroesophageal sphincter tissue female adult 51 years ATAC signal 2 2126 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/396d4ad2-d365-49be-aa89-c0d547489369/ENCFF234HJK.bigWig\ color 2,199,185\ longLabel Gastroesophageal sphincter tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR260ZIV Signal\ track wgEncodeReg4Epigenetics_ENCFF234HJK\ type bigWig\ visibility full\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_fwd Cd14+MoW/GroupAStreptococciD3+ bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward 0 2127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_fwd Cd14+MoW/GroupAStreptococciD3+ bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward 1 2127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF931TIH ENCSR198RHC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782 ZNF782 ENCSR198RHC signal 2 2127 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/dc43f95c-c12e-42d0-801a-ad626349d639/ENCFF931TIH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782 ZNF782 ENCSR198RHC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR198RHC Signal\ track wgEncodeReg4TfChip_ENCFF931TIH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF125CSV ENCSR261PWP Peak bigBed 5 Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC peak 4 2127 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/692adcfc-977b-40d0-bf3c-85bbd93d8999/ENCFF125CSV.bigBed\ color 2,199,185\ longLabel Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261PWP Peak\ track wgEncodeReg4Epigenetics_ENCFF125CSV\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_rev Cd14+MoW/GroupAStreptococciD3- bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse 0 2128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/GroupAStreptococciD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_rev Cd14+MoW/GroupAStreptococciD3- bigWig CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse 1 2128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Group%20A%20streptococci%2c%20donor3.CNhs13492.11884-125D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Group A streptococci, donor3_CNhs13492_11884-125D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11884-125D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/GroupAStreptococciD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithGroupAStreptococciDonor3_CNhs13492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11884-125D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF564MOT ENCSR198ZYJ Peak bigBed 5 Neural cell originated from H1 RAD21 peaks 4 2128 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/9481dcb8-0587-436c-b048-3a6475ef7501/ENCFF564MOT.bigBed\ labelFields none\ longLabel Neural cell originated from H1 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR198ZYJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF564MOT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF546IOZ ENCSR261PWP Signal bigWig Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC signal 2 2128 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/0edb15a4-84e1-42c9-8c4a-8439758dc597/ENCFF546IOZ.bigWig\ color 2,199,185\ longLabel Activated CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261PWP Signal\ track wgEncodeReg4Epigenetics_ENCFF546IOZ\ type bigWig\ visibility full\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_fwd Cd14+MoW/Ifn+N-hexaneD1+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward 0 2129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_fwd Cd14+MoW/Ifn+N-hexaneD1+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward 1 2129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF763TCD ENCSR198ZYJ Signal bigWig Neural cell originated from H1 RAD21 ENCSR198ZYJ signal 2 2129 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/86d6b01f-736f-4867-948d-44b0982bf0ba/ENCFF763TCD.bigWig\ color 155,155,18\ longLabel Neural cell originated from H1 RAD21 ENCSR198ZYJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR198ZYJ Signal\ track wgEncodeReg4TfChip_ENCFF763TCD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF654SYH ENCSR261RWJ Peak bigBed 5 Peyer's patch tissue female adult 51 years DNase peak 4 2129 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/5eb5566e-778e-4632-b3f2-059934422f34/ENCFF654SYH.bigBed\ color 6,218,147\ labelFields none\ longLabel Peyer's patch tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261RWJ Peak\ track wgEncodeReg4Epigenetics_ENCFF654SYH\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_rev Cd14+MoW/Ifn+N-hexaneD1- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse 0 2130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_rev Cd14+MoW/Ifn+N-hexaneD1- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse 1 2130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor1.CNhs13466.11861-125A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor1_CNhs13466_11861-125A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11861-125A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor1_CNhs13466_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11861-125A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF266FYW ENCSR199WXF Peak bigBed 5 GM12878 EED peaks 4 2130 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e8afdb0b-d809-4de4-a3b2-157f128748ec/ENCFF266FYW.bigBed\ labelFields none\ longLabel GM12878 EED peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR199WXF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF266FYW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF241BCT ENCSR261RWJ Signal bigWig Peyer's patch tissue female adult 51 years DNase signal 2 2130 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/3981ca23-5b86-4fce-a58d-b6a80281279a/ENCFF241BCT.bigWig\ color 6,218,147\ longLabel Peyer's patch tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261RWJ Signal\ track wgEncodeReg4Epigenetics_ENCFF241BCT\ type bigWig\ visibility full\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_fwd Cd14+MoW/Ifn+N-hexaneD2+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward 0 2131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_fwd Cd14+MoW/Ifn+N-hexaneD2+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward 1 2131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF231WWY ENCSR199WXF Signal bigWig GM12878 EED ENCSR199WXF signal 2 2131 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/352c1b14-ad7c-45a3-bf2f-8016f13bcb62/ENCFF231WWY.bigWig\ color 254,75,173\ longLabel GM12878 EED ENCSR199WXF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR199WXF Signal\ track wgEncodeReg4TfChip_ENCFF231WWY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF717CYU ENCSR261SMF Peak bigBed 5 IPS DF 6.9 DNase peak 4 2131 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/67800224-c71b-47b2-9b29-b6644352f2cc/ENCFF717CYU.bigBed\ color 6,218,147\ labelFields none\ longLabel IPS DF 6.9 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261SMF Peak\ track wgEncodeReg4Epigenetics_ENCFF717CYU\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_rev Cd14+MoW/Ifn+N-hexaneD2- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse 0 2132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_rev Cd14+MoW/Ifn+N-hexaneD2- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse 1 2132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor2.CNhs13476.11871-125B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor2_CNhs13476_11871-125B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11871-125B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor2_CNhs13476_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11871-125B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF281INV ENCSR200JYP Peak bigBed 5 K562 ZNF316 peaks 4 2132 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/d481535b-db03-4309-a786-d0fe420cb0e7/ENCFF281INV.bigBed\ labelFields none\ longLabel K562 ZNF316 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR200JYP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF281INV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF646IDT ENCSR261SMF Signal bigWig IPS DF 6.9 DNase signal 2 2132 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/499e8e86-bbe6-4402-8f48-134ecaefdb0b/ENCFF646IDT.bigWig\ color 6,218,147\ longLabel IPS DF 6.9 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261SMF Signal\ track wgEncodeReg4Epigenetics_ENCFF646IDT\ type bigWig\ visibility full\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_fwd Cd14+MoW/Ifn+N-hexaneD3+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward 0 2133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_fwd Cd14+MoW/Ifn+N-hexaneD3+ bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward 1 2133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF989CXT ENCSR200JYP Signal bigWig K562 ZNF316 ENCSR200JYP signal 2 2133 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/ccdc31a1-e3ca-4054-a473-d869806ada7e/ENCFF989CXT.bigWig\ color 254,75,173\ longLabel K562 ZNF316 ENCSR200JYP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR200JYP Signal\ track wgEncodeReg4TfChip_ENCFF989CXT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF656FBT ENCSR261VAS Peak bigBed 5 Smooth muscle cell originated from H9 CTCF peak 4 2133 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/4537c457-c883-4683-868c-44cf365340b7/ENCFF656FBT.bigBed\ color 0,176,240\ labelFields none\ longLabel Smooth muscle cell originated from H9 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261VAS Peak\ track wgEncodeReg4Epigenetics_ENCFF656FBT\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_rev Cd14+MoW/Ifn+N-hexaneD3- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse 0 2134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_rev Cd14+MoW/Ifn+N-hexaneD3- bigWig CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse 1 2134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20IFN%20%2b%20N-hexane%2c%20donor3.CNhs13490.11881-125C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with IFN + N-hexane, donor3_CNhs13490_11881-125C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11881-125C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/Ifn+N-hexaneD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithIFNNhexaneDonor3_CNhs13490_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11881-125C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF686VLI ENCSR201GGK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIL3 NFIL3 peaks 4 2134 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/98560ce9-3378-468e-87d4-0b9e1c817005/ENCFF686VLI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIL3 NFIL3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR201GGK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF686VLI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF475BOH ENCSR261VAS Signal bigWig Smooth muscle cell originated from H9 CTCF signal 2 2134 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/0a6b2fb3-2341-4c3f-8287-5fb7a470d2e8/ENCFF475BOH.bigWig\ color 0,176,240\ longLabel Smooth muscle cell originated from H9 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR261VAS Signal\ track wgEncodeReg4Epigenetics_ENCFF475BOH\ type bigWig\ visibility full\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_fwd Cd14+MoW/LipopolysaccharideD1+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward 0 2135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_fwd Cd14+MoW/LipopolysaccharideD1+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward 1 2135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF625JWJ ENCSR201GGK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIL3 NFIL3 ENCSR201GGK signal 2 2135 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/f5efa09c-6d73-4c30-a781-db5d5553c051/ENCFF625JWJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIL3 NFIL3 ENCSR201GGK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR201GGK Signal\ track wgEncodeReg4TfChip_ENCFF625JWJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF302OMG ENCSR262QJC Peak bigBed 5 Kidney tissue male embryo 87 days DNase peak 4 2135 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/2ab317f8-fd8e-4547-bfa1-f75d815e25bb/ENCFF302OMG.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue male embryo 87 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR262QJC Peak\ track wgEncodeReg4Epigenetics_ENCFF302OMG\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_rev Cd14+MoW/LipopolysaccharideD1- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse 0 2136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_rev Cd14+MoW/LipopolysaccharideD1- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse 1 2136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor1.CNhs13470.11865-125B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor1_CNhs13470_11865-125B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11865-125B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor1_CNhs13470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11865-125B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF403WPG ENCSR201NQZ Peak bigBed 5 K562 CTBP1 peaks 4 2136 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/61de5efe-d67d-4fae-8aee-efb5fc6e953a/ENCFF403WPG.bigBed\ labelFields none\ longLabel K562 CTBP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR201NQZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF403WPG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF793ZSS ENCSR262QJC Signal bigWig Kidney tissue male embryo 87 days DNase signal 2 2136 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/3dda30e8-fb75-41b9-9cc5-cf364041d3ce/ENCFF793ZSS.bigWig\ color 6,218,147\ longLabel Kidney tissue male embryo 87 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR262QJC Signal\ track wgEncodeReg4Epigenetics_ENCFF793ZSS\ type bigWig\ visibility full\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_fwd Cd14+MoW/LipopolysaccharideD2+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward 0 2137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_fwd Cd14+MoW/LipopolysaccharideD2+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward 1 2137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF507QQP ENCSR201NQZ Signal bigWig K562 CTBP1 ENCSR201NQZ signal 2 2137 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/74c6892b-ac39-4b15-aa3f-6dfa4fabdac1/ENCFF507QQP.bigWig\ color 254,75,173\ longLabel K562 CTBP1 ENCSR201NQZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR201NQZ Signal\ track wgEncodeReg4TfChip_ENCFF507QQP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF587PWA ENCSR263ELQ Peak bigBed 5 IPS DF 6.9 H3K4me3 peak 4 2137 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/9ecc8dc8-f545-4efc-8431-a42361435d5f/ENCFF587PWA.bigBed\ color 255,0,0\ longLabel IPS DF 6.9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR263ELQ Peak\ track wgEncodeReg4Epigenetics_ENCFF587PWA\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_rev Cd14+MoW/LipopolysaccharideD2- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse 0 2138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_rev Cd14+MoW/LipopolysaccharideD2- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse 1 2138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor2.CNhs13533.11875-125C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor2_CNhs13533_11875-125C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11875-125C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor2_CNhs13533_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11875-125C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF056JQX ENCSR203QEB Peak bigBed 5 Panc1 CTCF peaks 4 2138 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1e3cecc5-3880-402b-8f8e-13c4dfaf44d6/ENCFF056JQX.bigBed\ labelFields none\ longLabel Panc1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR203QEB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF056JQX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF368YTZ ENCSR263ELQ Signal bigWig IPS DF 6.9 H3K4me3 signal 2 2138 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/4cfc5baf-035e-4d56-9971-aabf790143b0/ENCFF368YTZ.bigWig\ color 255,0,0\ longLabel IPS DF 6.9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR263ELQ Signal\ track wgEncodeReg4Epigenetics_ENCFF368YTZ\ type bigWig\ visibility full\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_fwd Cd14+MoW/LipopolysaccharideD3+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward 0 2139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_fwd Cd14+MoW/LipopolysaccharideD3+ bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward 1 2139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF004ITE ENCSR203QEB Signal bigWig Panc1 CTCF ENCSR203QEB signal 2 2139 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f34b7675-ebd9-47b1-83de-98bfd1913cf7/ENCFF004ITE.bigWig\ color 175,100,41\ longLabel Panc1 CTCF ENCSR203QEB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR203QEB Signal\ track wgEncodeReg4TfChip_ENCFF004ITE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF958FJI ENCSR263IGU Peak bigBed 5 Right lung tissue female embryo 91 days DNase peak 4 2139 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/c016854f-3f66-4a9a-81ff-5fb9e1321805/ENCFF958FJI.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lung tissue female embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR263IGU Peak\ track wgEncodeReg4Epigenetics_ENCFF958FJI\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_rev Cd14+MoW/LipopolysaccharideD3- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse 0 2140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/LipopolysaccharideD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_rev Cd14+MoW/LipopolysaccharideD3- bigWig CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse 1 2140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20lipopolysaccharide%2c%20donor3.CNhs13545.11885-125D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with lipopolysaccharide, donor3_CNhs13545_11885-125D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11885-125D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/LipopolysaccharideD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithLipopolysaccharideDonor3_CNhs13545_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11885-125D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF737MDY ENCSR204ALX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431 ZNF431 peaks 4 2140 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/df62157e-06b7-48a9-83f7-96d2fbb16e6b/ENCFF737MDY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431 ZNF431 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR204ALX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF737MDY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962DKE ENCSR263IGU Signal bigWig Right lung tissue female embryo 91 days DNase signal 2 2140 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/d029e164-0593-49c8-a0a2-857a3a433bfa/ENCFF962DKE.bigWig\ color 6,218,147\ longLabel Right lung tissue female embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR263IGU Signal\ track wgEncodeReg4Epigenetics_ENCFF962DKE\ type bigWig\ visibility full\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_fwd Cd14+MoW/SalmonellaD1+ bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward 0 2141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_fwd Cd14+MoW/SalmonellaD1+ bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward 1 2141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF560NMI ENCSR204ALX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431 ZNF431 ENCSR204ALX signal 2 2141 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/30b40d5d-15dd-4171-a39d-6fd13b8c5eb8/ENCFF560NMI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF431 ZNF431 ENCSR204ALX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR204ALX Signal\ track wgEncodeReg4TfChip_ENCFF560NMI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF977WRL ENCSR263WLD Peak bigBed 5 CD4-positive, alpha-beta T cell H3K4me3 peak 4 2141 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/59408058-f5b1-424e-a459-fc9e8964e1ea/ENCFF977WRL.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR263WLD Peak\ track wgEncodeReg4Epigenetics_ENCFF977WRL\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_rev Cd14+MoW/SalmonellaD1- bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse 0 2142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_rev Cd14+MoW/SalmonellaD1- bigWig CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse 1 2142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor1.CNhs13471.11866-125B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor1_CNhs13471_11866-125B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11866-125B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor1_CNhs13471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11866-125B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF867MFZ ENCSR205FOW Peak bigBed 5 Liver tissue female child (4 years) ATF3 peaks 4 2142 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/81e9e2b0-89d5-4de9-865b-0ffdf6ed7319/ENCFF867MFZ.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR205FOW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF867MFZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF296NOR ENCSR263WLD Signal bigWig CD4-positive, alpha-beta T cell H3K4me3 signal 2 2142 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/0532bf42-d6b6-42df-91a6-e4236dca2654/ENCFF296NOR.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR263WLD Signal\ track wgEncodeReg4Epigenetics_ENCFF296NOR\ type bigWig\ visibility full\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_fwd Cd14+MoW/SalmonellaD2+ bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward 0 2143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_fwd Cd14+MoW/SalmonellaD2+ bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward 1 2143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF611FLJ ENCSR205FOW Signal bigWig Liver tissue female child (4 years) ATF3 ENCSR205FOW signal 2 2143 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/9985cbd5-61b7-432a-8dd0-f29a14a34ded/ENCFF611FLJ.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) ATF3 ENCSR205FOW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR205FOW Signal\ track wgEncodeReg4TfChip_ENCFF611FLJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF781BNB ENCSR264APD Peak bigBed 5 Muscle layer of duodenum tissue male adult 59 years H3K4me3 peak 4 2143 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5cc91e36-f587-4cc9-9fe6-9d558d3cac81/ENCFF781BNB.bigBed\ color 255,0,0\ longLabel Muscle layer of duodenum tissue male adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR264APD Peak\ track wgEncodeReg4Epigenetics_ENCFF781BNB\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_rev Cd14+MoW/SalmonellaD2- bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse 0 2144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_rev Cd14+MoW/SalmonellaD2- bigWig CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse 1 2144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor2.CNhs13485.11876-125C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor2_CNhs13485_11876-125C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11876-125C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor2_CNhs13485_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11876-125C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF672KVS ENCSR206BVQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786 ZNF786 peaks 4 2144 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/4ca04021-589c-42c9-9afe-a6248e4638b1/ENCFF672KVS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786 ZNF786 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR206BVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF672KVS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF910MXI ENCSR264APD Signal bigWig Muscle layer of duodenum tissue male adult 59 years H3K4me3 signal 2 2144 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/18ac9ae3-34f9-4248-913c-d3b6b8d13972/ENCFF910MXI.bigWig\ color 255,0,0\ longLabel Muscle layer of duodenum tissue male adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR264APD Signal\ track wgEncodeReg4Epigenetics_ENCFF910MXI\ type bigWig\ visibility full\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_fwd Cd14+MoW/SalmonellaD3+ bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward 0 2145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_fwd Cd14+MoW/SalmonellaD3+ bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward 1 2145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF902KCU ENCSR206BVQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786 ZNF786 ENCSR206BVQ signal 2 2145 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/6b235071-65f9-4d36-bf8f-285490e41fc3/ENCFF902KCU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786 ZNF786 ENCSR206BVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR206BVQ Signal\ track wgEncodeReg4TfChip_ENCFF902KCU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF663ZVU ENCSR264ZTG Peak bigBed 5 Brain organoid male adult 53 years, 90 days post differentiation H3K4me3 peak 4 2145 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/d699b53a-7aee-464a-97ea-dbe682cdd732/ENCFF663ZVU.bigBed\ color 255,0,0\ longLabel Brain organoid male adult 53 years, 90 days post differentiation H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR264ZTG Peak\ track wgEncodeReg4Epigenetics_ENCFF663ZVU\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_rev Cd14+MoW/SalmonellaD3- bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse 0 2146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/SalmonellaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_rev Cd14+MoW/SalmonellaD3- bigWig CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse 1 2146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Salmonella%2c%20donor3.CNhs13493.11886-125D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Salmonella, donor3_CNhs13493_11886-125D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11886-125D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/SalmonellaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithSalmonellaDonor3_CNhs13493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11886-125D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF546QIK ENCSR206ETG Peak bigBed 5 Gastroesophageal sphincter tissue female adult (53 years) CTCF peaks 4 2146 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/71e1bde0-99f8-4c8b-87f2-c566da507f28/ENCFF546QIK.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR206ETG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF546QIK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF878PYH ENCSR264ZTG Signal bigWig Brain organoid male adult 53 years, 90 days post differentiation H3K4me3 signal 2 2146 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/8ec3b9ba-8f0f-4f8f-ba8d-a0c14b07df33/ENCFF878PYH.bigWig\ color 255,0,0\ longLabel Brain organoid male adult 53 years, 90 days post differentiation H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR264ZTG Signal\ track wgEncodeReg4Epigenetics_ENCFF878PYH\ type bigWig\ visibility full\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_fwd Cd14+MoW/TrehaloseDimycolateD1+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward 0 2147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_fwd Cd14+MoW/TrehaloseDimycolateD1+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward 1 2147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF733RSG ENCSR206ETG Signal bigWig Gastroesophageal sphincter tissue female adult (53 years) CTCF ENCSR206ETG signal 2 2147 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7541064e-c1a8-42b5-b153-24e2c3a91e08/ENCFF733RSG.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (53 years) CTCF ENCSR206ETG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR206ETG Signal\ track wgEncodeReg4TfChip_ENCFF733RSG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF858YQT ENCSR265ARE Peak bigBed 5 VCaP CTCF peak 4 2147 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7c6d5c2f-483a-4d65-af7f-019a4f84f0cf/ENCFF858YQT.bigBed\ color 0,176,240\ labelFields none\ longLabel VCaP CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265ARE Peak\ track wgEncodeReg4Epigenetics_ENCFF858YQT\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_rev Cd14+MoW/TrehaloseDimycolateD1- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse 0 2148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_rev Cd14+MoW/TrehaloseDimycolateD1- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse 1 2148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor1.CNhs13467.11862-125A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1_CNhs13467_11862-125A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11862-125A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor1_CNhs13467_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11862-125A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF833ACX ENCSR207GYC Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF70 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF70 peaks 4 2148 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/a127321b-911b-4a33-9fe4-61e362f4ff44/ENCFF833ACX.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF70 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF70 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR207GYC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF833ACX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF328ACZ ENCSR265ARE Signal bigWig VCaP CTCF signal 2 2148 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/790ca0c5-38a2-451f-a6f3-77b980a44db2/ENCFF328ACZ.bigWig\ color 0,176,240\ longLabel VCaP CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265ARE Signal\ track wgEncodeReg4Epigenetics_ENCFF328ACZ\ type bigWig\ visibility full\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_fwd Cd14+MoW/TrehaloseDimycolateD2+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward 0 2149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_fwd Cd14+MoW/TrehaloseDimycolateD2+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward 1 2149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF459BRB ENCSR207GYC Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF70 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF70 ENCSR207GYC signal 2 2149 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/55ef90a5-d603-4b59-bda1-b353c82d4fa8/ENCFF459BRB.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF70 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF70 ENCSR207GYC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR207GYC Signal\ track wgEncodeReg4TfChip_ENCFF459BRB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF269EDN ENCSR265PFQ Peak bigBed 5 Body of pancreas tissue male adult 54 years CTCF peak 4 2149 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/3b5564dd-8a0b-4380-901e-c5db77ed14c4/ENCFF269EDN.bigBed\ color 0,176,240\ labelFields none\ longLabel Body of pancreas tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265PFQ Peak\ track wgEncodeReg4Epigenetics_ENCFF269EDN\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_rev Cd14+MoW/TrehaloseDimycolateD2- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse 0 2150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_rev Cd14+MoW/TrehaloseDimycolateD2- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse 1 2150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor2.CNhs13483.11872-125B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2_CNhs13483_11872-125B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11872-125B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor2_CNhs13483_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11872-125B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF007OSW ENCSR207PFI Peak bigBed 5 GM12878 ZBED1 peaks 4 2150 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/e9fcaf54-d2c2-4e4e-b5cb-e5737fc9c953/ENCFF007OSW.bigBed\ labelFields none\ longLabel GM12878 ZBED1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR207PFI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF007OSW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF078UTK ENCSR265PFQ Signal bigWig Body of pancreas tissue male adult 54 years CTCF signal 2 2150 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/2df99da4-9347-4d2c-9a67-414657aa2db3/ENCFF078UTK.bigWig\ color 0,176,240\ longLabel Body of pancreas tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265PFQ Signal\ track wgEncodeReg4Epigenetics_ENCFF078UTK\ type bigWig\ visibility full\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_fwd Cd14+MoW/TrehaloseDimycolateD3+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward 0 2151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_fwd Cd14+MoW/TrehaloseDimycolateD3+ bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward 1 2151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF758XVK ENCSR207PFI Signal bigWig GM12878 ZBED1 ENCSR207PFI signal 2 2151 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/f004f10c-780a-48af-8063-12a6ce6cbb2f/ENCFF758XVK.bigWig\ color 254,75,173\ longLabel GM12878 ZBED1 ENCSR207PFI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR207PFI Signal\ track wgEncodeReg4TfChip_ENCFF758XVK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF967FJM ENCSR265SCJ Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K27ac peak 4 2151 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/8b2f367e-7332-4a14-9e2c-55caf916e618/ENCFF967FJM.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265SCJ Peak\ track wgEncodeReg4Epigenetics_ENCFF967FJM\ type bigBed 5\ visibility squish\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_rev Cd14+MoW/TrehaloseDimycolateD3- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse 0 2152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_rev Cd14+MoW/TrehaloseDimycolateD3- bigWig CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse 1 2152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14%2b%20monocytes%20-%20treated%20with%20Trehalose%20dimycolate%20%28TDM%29%2c%20donor3.CNhs13544.11882-125D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3_CNhs13544_11882-125D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11882-125D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14+MoW/TrehaloseDimycolateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14MonocytesTreatedWithTrehaloseDimycolateTDMDonor3_CNhs13544_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11882-125D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF624CAQ ENCSR207WFD Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGA2 HMGA2 peaks 4 2152 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/814a07cf-00ac-4217-8037-a127e47b33b7/ENCFF624CAQ.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGA2 HMGA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR207WFD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF624CAQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF065MMS ENCSR265SCJ Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K27ac signal 2 2152 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e228833f-7c48-44c7-ae29-e9678b2621c4/ENCFF065MMS.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265SCJ Signal\ track wgEncodeReg4Epigenetics_ENCFF065MMS\ type bigWig\ visibility full\ CD14CD16MonocytesDonor2_CNhs13207_ctss_fwd Cd14-cd16+MonocytesD2+ bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward 0 2153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13207_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_tpm_fwd Cd14-cd16+MonocytesD2+ bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward 1 2153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor2_CNhs13207_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF331MYM ENCSR207WFD Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGA2 HMGA2 ENCSR207WFD signal 2 2153 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/00ddeffc-279f-4895-b90e-a69ef865659f/ENCFF331MYM.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HMGA2 HMGA2 ENCSR207WFD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR207WFD Signal\ track wgEncodeReg4TfChip_ENCFF331MYM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF194WPR ENCSR265TEK Peak bigBed 5 NCI-H226 DNase peak 4 2153 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b0a645b5-0ac9-4d14-af15-b90b1988f340/ENCFF194WPR.bigBed\ color 6,218,147\ labelFields none\ longLabel NCI-H226 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265TEK Peak\ track wgEncodeReg4Epigenetics_ENCFF194WPR\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor2_CNhs13207_ctss_rev Cd14-cd16+MonocytesD2- bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse 0 2154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13207_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor2_CNhs13207_tpm_rev Cd14-cd16+MonocytesD2- bigWig CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse 1 2154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor2.CNhs13207.11800-124C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor2_CNhs13207_11800-124C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11800-124C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor2_CNhs13207_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11800-124C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF641EBK ENCSR210HBN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5 IKZF5 peaks 4 2154 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/1859584d-b010-4c20-909b-a13c47ca5ec8/ENCFF641EBK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5 IKZF5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR210HBN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF641EBK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF304BKH ENCSR265TEK Signal bigWig NCI-H226 DNase signal 2 2154 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b0198580-26e8-4f53-a658-13bca3b3d71c/ENCFF304BKH.bigWig\ color 6,218,147\ longLabel NCI-H226 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR265TEK Signal\ track wgEncodeReg4Epigenetics_ENCFF304BKH\ type bigWig\ visibility full\ CD14CD16MonocytesDonor3_CNhs13548_ctss_fwd Cd14-cd16+MonocytesD3+ bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward 0 2155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13548_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_tpm_fwd Cd14-cd16+MonocytesD3+ bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward 1 2155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD14CD16MonocytesDonor3_CNhs13548_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF966EPW ENCSR210HBN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5 IKZF5 ENCSR210HBN signal 2 2155 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/28bd3d7e-d1f9-441b-b6a0-8be98036ff65/ENCFF966EPW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5 IKZF5 ENCSR210HBN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR210HBN Signal\ track wgEncodeReg4TfChip_ENCFF966EPW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF825QXK ENCSR266CJT Peak bigBed 5 Spleen tissue female adult 59 years CTCF peak 4 2155 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/ac38b513-9b53-4e75-9174-528c26deb6b7/ENCFF825QXK.bigBed\ color 0,176,240\ labelFields none\ longLabel Spleen tissue female adult 59 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR266CJT Peak\ track wgEncodeReg4Epigenetics_ENCFF825QXK\ type bigBed 5\ visibility squish\ CD14CD16MonocytesDonor3_CNhs13548_ctss_rev Cd14-cd16+MonocytesD3- bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse 0 2156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd14-cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13548_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ CD14CD16MonocytesDonor3_CNhs13548_tpm_rev Cd14-cd16+MonocytesD3- bigWig CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse 1 2156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD14-CD16%2b%20Monocytes%2c%20donor3.CNhs13548.11911-125G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD14-CD16+ Monocytes, donor3_CNhs13548_11911-125G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11911-125G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd14-cd16+MonocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD14CD16MonocytesDonor3_CNhs13548_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11911-125G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF835SNY ENCSR210MET Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391 ZNF391 peaks 4 2156 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/38b14bef-0870-45ca-b4fb-e4bb5fa923ba/ENCFF835SNY.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391 ZNF391 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR210MET Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF835SNY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF161AWO ENCSR266CJT Signal bigWig Spleen tissue female adult 59 years CTCF signal 2 2156 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/aaf3f2ef-15a1-440d-a2e5-9a44e594cb98/ENCFF161AWO.bigWig\ color 0,176,240\ longLabel Spleen tissue female adult 59 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR266CJT Signal\ track wgEncodeReg4Epigenetics_ENCFF161AWO\ type bigWig\ visibility full\ CD19BCellsDonor1_CNhs12343_ctss_fwd Cd19+BCellsD1+ bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward 0 2157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor1_CNhs12343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_tpm_fwd Cd19+BCellsD1+ bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward 1 2157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor1_CNhs12343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF184JBV ENCSR210MET Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391 ZNF391 ENCSR210MET signal 2 2157 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ad350e0c-84b5-44c2-9c3e-75e29fccf24c/ENCFF184JBV.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391 ZNF391 ENCSR210MET signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR210MET Signal\ track wgEncodeReg4TfChip_ENCFF184JBV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF681NLB ENCSR266NDC Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase peak 4 2157 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/714c5a61-4e80-42a1-86e9-1e79c8575b94/ENCFF681NLB.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR266NDC Peak\ track wgEncodeReg4Epigenetics_ENCFF681NLB\ type bigBed 5\ visibility squish\ CD19BCellsDonor1_CNhs12343_ctss_rev Cd19+BCellsD1- bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse 0 2158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor1_CNhs12343_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ CD19BCellsDonor1_CNhs12343_tpm_rev Cd19+BCellsD1- bigWig CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse 1 2158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor1.CNhs12343.11544-120B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor1_CNhs12343_11544-120B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11544-120B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor1_CNhs12343_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11544-120B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF767LNC ENCSR211AFA Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 2158 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/3c156a66-3c36-4a9a-bd50-9710286c1eee/ENCFF767LNC.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211AFA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF767LNC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF016SWR ENCSR266NDC Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase signal 2 2158 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/332f5677-21d7-474c-a187-849cf9ffb4f5/ENCFF016SWR.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR266NDC Signal\ track wgEncodeReg4Epigenetics_ENCFF016SWR\ type bigWig\ visibility full\ CD19BCellsDonor2_CNhs12352_ctss_fwd Cd19+BCellsD2+ bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward 0 2159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor2_CNhs12352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_tpm_fwd Cd19+BCellsD2+ bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward 1 2159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor2_CNhs12352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF409LLA ENCSR211AFA Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR211AFA signal 2 2159 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/2d6e26c6-1375-49f8-a2a2-704d304cbe20/ENCFF409LLA.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR211AFA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211AFA Signal\ track wgEncodeReg4TfChip_ENCFF409LLA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF411ACD ENCSR266ZUX Peak bigBed 5 Nephron organoid female embryo 5 days, 35 days post differentiation CTCF peak 4 2159 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/06a0f6cc-726f-447b-bcd2-8babc0419f0c/ENCFF411ACD.bigBed\ color 0,176,240\ labelFields none\ longLabel Nephron organoid female embryo 5 days, 35 days post differentiation CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR266ZUX Peak\ track wgEncodeReg4Epigenetics_ENCFF411ACD\ type bigBed 5\ visibility squish\ CD19BCellsDonor2_CNhs12352_ctss_rev Cd19+BCellsD2- bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse 0 2160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor2_CNhs12352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor2_CNhs12352_tpm_rev Cd19+BCellsD2- bigWig CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse 1 2160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor2.CNhs12352.11624-122B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor2_CNhs12352_11624-122B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11624-122B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor2_CNhs12352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11624-122B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF381BKT ENCSR211GNP Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN4 ZSCAN4 peaks 4 2160 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/56e782b6-b0ae-478f-953e-feccca428453/ENCFF381BKT.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN4 ZSCAN4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211GNP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF381BKT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF947KDR ENCSR266ZUX Signal bigWig Nephron organoid female embryo 5 days, 35 days post differentiation CTCF signal 2 2160 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/79e0f880-ae57-4295-ba3a-0b708ffa8b77/ENCFF947KDR.bigWig\ color 0,176,240\ longLabel Nephron organoid female embryo 5 days, 35 days post differentiation CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR266ZUX Signal\ track wgEncodeReg4Epigenetics_ENCFF947KDR\ type bigWig\ visibility full\ CD19BCellsDonor3_CNhs12354_ctss_fwd Cd19+BCellsD3+ bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward 0 2161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor3_CNhs12354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_tpm_fwd Cd19+BCellsD3+ bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward 1 2161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD19BCellsDonor3_CNhs12354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF072CVF ENCSR211GNP Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN4 ZSCAN4 ENCSR211GNP signal 2 2161 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/a3296f7a-63ed-4fdc-b567-e21d08b826f7/ENCFF072CVF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN4 ZSCAN4 ENCSR211GNP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211GNP Signal\ track wgEncodeReg4TfChip_ENCFF072CVF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF160EDG ENCSR267NWZ Peak bigBed 5 Multiple sclerosis CD14-positive monocyte H3K4me3 peak 4 2161 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/ecc637a1-727f-4c81-a306-6116cae4dd80/ENCFF160EDG.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD14-positive monocyte H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR267NWZ Peak\ track wgEncodeReg4Epigenetics_ENCFF160EDG\ type bigBed 5\ visibility squish\ CD19BCellsDonor3_CNhs12354_ctss_rev Cd19+BCellsD3- bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse 0 2162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd19+BCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor3_CNhs12354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ CD19BCellsDonor3_CNhs12354_tpm_rev Cd19+BCellsD3- bigWig CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse 1 2162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD19%2b%20B%20Cells%2c%20donor3.CNhs12354.11705-123B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD19+ B Cells, donor3_CNhs12354_11705-123B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11705-123B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd19+BCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD19BCellsDonor3_CNhs12354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11705-123B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF113OPQ ENCSR211LTF Peak bigBed 5 K562 EGR1 peaks 4 2162 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/d20f37b1-c271-4056-b6e5-0d6f6a056108/ENCFF113OPQ.bigBed\ labelFields none\ longLabel K562 EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211LTF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF113OPQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF790FMB ENCSR267NWZ Signal bigWig Multiple sclerosis CD14-positive monocyte H3K4me3 signal 2 2162 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/0b58e23f-7f0b-493b-bbb8-b0ff802f6790/ENCFF790FMB.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD14-positive monocyte H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR267NWZ Signal\ track wgEncodeReg4Epigenetics_ENCFF790FMB\ type bigWig\ visibility full\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_fwd Cd34+StemCellsAdultBoneMarrowD1Tr1+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward 0 2163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_fwd Cd34+StemCellsAdultBoneMarrowD1Tr1+ bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward 1 2163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF577YFV ENCSR211LTF Signal bigWig K562 EGR1 ENCSR211LTF signal 2 2163 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/8a2c39b6-8fd3-47fa-867a-e975514fea51/ENCFF577YFV.bigWig\ color 254,75,173\ longLabel K562 EGR1 ENCSR211LTF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211LTF Signal\ track wgEncodeReg4TfChip_ENCFF577YFV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF022ZKX ENCSR267UFM Signal bigWig Placenta tissue embryo DNase signal 2 2163 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/33d0392d-ce3e-4d47-943e-b997424e60a1/ENCFF022ZKX.bigWig\ color 6,218,147\ longLabel Placenta tissue embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR267UFM Signal\ track wgEncodeReg4Epigenetics_ENCFF022ZKX\ type bigWig\ visibility full\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_rev Cd34+StemCellsAdultBoneMarrowD1Tr1- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse 0 2164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_rev Cd34+StemCellsAdultBoneMarrowD1Tr1- bigWig CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse 1 2164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%2b%20stem%20cells%20-%20adult%20bone%20marrow%20derived%2c%20donor1%2c%20tech_rep1.CNhs12588.12225-129F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34+ stem cells - adult bone marrow derived, donor1, tech_rep1_CNhs12588_12225-129F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12225-129F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34+StemCellsAdultBoneMarrowD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34StemCellsAdultBoneMarrowDerivedDonor1TechRep1_CNhs12588_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12225-129F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF606COZ ENCSR211PZO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI4 GLI4 peaks 4 2164 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/c40e784c-d551-4921-92f3-37040002c7cd/ENCFF606COZ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI4 GLI4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211PZO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF606COZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF750FOL ENCSR267YXV Peak bigBed 5 Neutrophil H3K27ac peak 4 2164 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/0192e574-e3d6-4ffb-86f8-6c1fca8496d2/ENCFF750FOL.bigBed\ color 181,145,0\ longLabel Neutrophil H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR267YXV Peak\ track wgEncodeReg4Epigenetics_ENCFF750FOL\ type bigBed 5\ visibility squish\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_fwd Cd34ErythrocyteBr1+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward 0 2165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_fwd Cd34ErythrocyteBr1+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward 1 2165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF255UHV ENCSR211PZO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI4 GLI4 ENCSR211PZO signal 2 2165 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/82cd9106-1a50-492a-8625-b7e5d4e50409/ENCFF255UHV.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI4 GLI4 ENCSR211PZO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR211PZO Signal\ track wgEncodeReg4TfChip_ENCFF255UHV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF311TAY ENCSR267YXV Signal bigWig Neutrophil H3K27ac signal 2 2165 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/d8775b3a-42eb-4d3b-bc0e-2aabb1ff3d6e/ENCFF311TAY.bigWig\ color 181,145,0\ longLabel Neutrophil H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR267YXV Signal\ track wgEncodeReg4Epigenetics_ENCFF311TAY\ type bigWig\ visibility full\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_rev Cd34ErythrocyteBr1- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse 0 2166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_rev Cd34ErythrocyteBr1- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse 1 2166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep1.CNhs13552.11931-125I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep1_CNhs13552_11931-125I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11931-125I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep1_CNhs13552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11931-125I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF171OVM ENCSR212YKD Peak bigBed 5 GM12878 SKIL peaks 4 2166 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/6caaec0d-dddb-4c52-bcfa-a11a872bcccb/ENCFF171OVM.bigBed\ labelFields none\ longLabel GM12878 SKIL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR212YKD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF171OVM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF274YMU ENCSR268GBM Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 2166 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/f58d1ba6-8563-4e38-bea9-9fc0246368fc/ENCFF274YMU.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268GBM Peak\ track wgEncodeReg4Epigenetics_ENCFF274YMU\ type bigBed 5\ visibility squish\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_fwd Cd34ErythrocyteBr2+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward 0 2167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_fwd Cd34ErythrocyteBr2+ bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward 1 2167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF292AVI ENCSR212YKD Signal bigWig GM12878 SKIL ENCSR212YKD signal 2 2167 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/946ae492-d0b7-4c5c-8894-b3a56e3ca6bb/ENCFF292AVI.bigWig\ color 254,75,173\ longLabel GM12878 SKIL ENCSR212YKD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR212YKD Signal\ track wgEncodeReg4TfChip_ENCFF292AVI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF938OBZ ENCSR268GBM Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2167 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/5144904e-b096-4146-a009-6610c6de705c/ENCFF938OBZ.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268GBM Signal\ track wgEncodeReg4Epigenetics_ENCFF938OBZ\ type bigWig\ visibility full\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_rev Cd34ErythrocyteBr2- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse 0 2168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd34ErythrocyteBr2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_rev Cd34ErythrocyteBr2- bigWig CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse 1 2168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD34%20cells%20differentiated%20to%20erythrocyte%20lineage%2c%20biol_%20rep2.CNhs13553.11932-125I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD34 cells differentiated to erythrocyte lineage, biol_ rep2_CNhs13553_11932-125I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11932-125I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd34ErythrocyteBr2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD34CellsDifferentiatedToErythrocyteLineageBiol_Rep2_CNhs13553_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11932-125I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF728FRA ENCSR213HBY Peak bigBed 5 K562 TOE1 peaks 4 2168 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/913b120f-3c34-4b47-81bc-0fd73d86c708/ENCFF728FRA.bigBed\ labelFields none\ longLabel K562 TOE1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR213HBY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF728FRA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF023MAH ENCSR268JQE Peak bigBed 5 Ovary tissue female adult 30 years H3K27ac peak 4 2168 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2023/02/01/3c91ea38-1d5d-4ac9-8839-78e6a8f1fa71/ENCFF023MAH.bigBed\ color 181,145,0\ longLabel Ovary tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268JQE Peak\ track wgEncodeReg4Epigenetics_ENCFF023MAH\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_fwd Cd4+cd25+cd45ra+D3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward 0 2169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_fwd Cd4+cd25+cd45ra+D3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward 1 2169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF384ECB ENCSR213HBY Signal bigWig K562 TOE1 ENCSR213HBY signal 2 2169 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/55d2ff4c-5f7e-4b1d-8eff-24c1a5cd5a85/ENCFF384ECB.bigWig\ color 254,75,173\ longLabel K562 TOE1 ENCSR213HBY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR213HBY Signal\ track wgEncodeReg4TfChip_ENCFF384ECB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF083NUK ENCSR268JQE Signal bigWig Ovary tissue female adult 30 years H3K27ac signal 2 2169 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-private.s3.amazonaws.com/2020/10/10/9c70631b-421a-43aa-acd7-5e45f98b91bb/ENCFF083NUK.bigWig\ color 181,145,0\ longLabel Ovary tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268JQE Signal\ track wgEncodeReg4Epigenetics_ENCFF083NUK\ type bigWig\ visibility full\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_rev Cd4+cd25+cd45ra+D3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse 0 2170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_rev Cd4+cd25+cd45ra+D3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse 1 2170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%2c%20donor3.CNhs13513.11907-125F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells, donor3_CNhs13513_11907-125F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11907-125F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsDonor3_CNhs13513_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11907-125F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF892OZT ENCSR213QOZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD1 SMAD1 peaks 4 2170 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/8fa20b66-994f-4ae5-88fe-c2c7116633d5/ENCFF892OZT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD1 SMAD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR213QOZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF892OZT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF864FOZ ENCSR268QCH Peak bigBed 5 Right renal cortex interstitium tissue male embryo 105 days DNase peak 4 2170 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/2939ff49-2e59-4af9-9c0c-552da9ca3c32/ENCFF864FOZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Right renal cortex interstitium tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268QCH Peak\ track wgEncodeReg4Epigenetics_ENCFF864FOZ\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_fwd Cd4+cd25+cd45ra+ExpdD1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward 0 2171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_fwd Cd4+cd25+cd45ra+ExpdD1+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward 1 2171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF989PVS ENCSR213QOZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD1 SMAD1 ENCSR213QOZ signal 2 2171 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/9a99e077-40cc-4ee1-8816-571b6c40eadd/ENCFF989PVS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD1 SMAD1 ENCSR213QOZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR213QOZ Signal\ track wgEncodeReg4TfChip_ENCFF989PVS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF729PEV ENCSR268QCH Signal bigWig Right renal cortex interstitium tissue male embryo 105 days DNase signal 2 2171 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/f479798d-e9cd-4d30-873e-920b6010d325/ENCFF729PEV.bigWig\ color 6,218,147\ longLabel Right renal cortex interstitium tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268QCH Signal\ track wgEncodeReg4Epigenetics_ENCFF729PEV\ type bigWig\ visibility full\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_rev Cd4+cd25+cd45ra+ExpdD1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse 0 2172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_rev Cd4+cd25+cd45ra+ExpdD1- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse 1 2172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13203.11793-124C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor1_CNhs13203_11793-124C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11793-124C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor1_CNhs13203_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11793-124C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF376TLP ENCSR213VUI Peak bigBed 5 K562 TRIM25 peaks 4 2172 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/2e5769d9-7d29-47cd-bf08-6f9d2a29e41f/ENCFF376TLP.bigBed\ labelFields none\ longLabel K562 TRIM25 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR213VUI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF376TLP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF420QNT ENCSR268ZCF Peak bigBed 5 Sigmoid colon tissue female adult 53 years H3K27ac peak 4 2172 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/49a53071-bfd1-471b-8d18-f26e825d5d5f/ENCFF420QNT.bigBed\ color 181,145,0\ longLabel Sigmoid colon tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268ZCF Peak\ track wgEncodeReg4Epigenetics_ENCFF420QNT\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_fwd Cd4+cd25+cd45ra+ExpdD2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward 0 2173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_fwd Cd4+cd25+cd45ra+ExpdD2+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward 1 2173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF297KHP ENCSR213VUI Signal bigWig K562 TRIM25 ENCSR213VUI signal 2 2173 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/e683c849-59b8-442a-a667-f64c219235d0/ENCFF297KHP.bigWig\ color 254,75,173\ longLabel K562 TRIM25 ENCSR213VUI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR213VUI Signal\ track wgEncodeReg4TfChip_ENCFF297KHP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF111DLN ENCSR268ZCF Signal bigWig Sigmoid colon tissue female adult 53 years H3K27ac signal 2 2173 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/87e58d97-28d9-4f70-ac2d-894526cf9250/ENCFF111DLN.bigWig\ color 181,145,0\ longLabel Sigmoid colon tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR268ZCF Signal\ track wgEncodeReg4Epigenetics_ENCFF111DLN\ type bigWig\ visibility full\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_rev Cd4+cd25+cd45ra+ExpdD2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse 0 2174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_rev Cd4+cd25+cd45ra+ExpdD2- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse 1 2174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13918.11915-125G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor2_CNhs13918_11915-125G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11915-125G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor2_CNhs13918_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11915-125G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF594VNM ENCSR214EKV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 peaks 4 2174 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/30/be345a7a-81c2-4d89-9005-5acedd9f57ed/ENCFF594VNM.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR214EKV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF594VNM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF819AJG ENCSR269OVV Peak bigBed 5 B cell H3K4me3 peak 4 2174 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/cf53512d-a404-4dfb-9d04-f35c48c602f0/ENCFF819AJG.bigBed\ color 255,0,0\ longLabel B cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR269OVV Peak\ track wgEncodeReg4Epigenetics_ENCFF819AJG\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_fwd Cd4+cd25+cd45ra+ExpdD3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward 0 2175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_fwd Cd4+cd25+cd45ra+ExpdD3+ bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward 1 2175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF855CVL ENCSR214EKV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 ENCSR214EKV signal 2 2175 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/30/2a927748-0a2c-4055-93ec-cad80dfdb59c/ENCFF855CVL.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 ENCSR214EKV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR214EKV Signal\ track wgEncodeReg4TfChip_ENCFF855CVL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF682CXH ENCSR269OVV Signal bigWig B cell H3K4me3 signal 2 2175 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/6aab9ff6-8ae6-4e06-bf2b-d2601f02b1bc/ENCFF682CXH.bigWig\ color 255,0,0\ longLabel B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR269OVV Signal\ track wgEncodeReg4Epigenetics_ENCFF682CXH\ type bigWig\ visibility full\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_rev Cd4+cd25+cd45ra+ExpdD3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse 0 2176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_rev Cd4+cd25+cd45ra+ExpdD3- bigWig CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse 1 2176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA%2b%20naive%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13919.11919-125H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA+ naive regulatory T cells expanded, donor3_CNhs13919_11919-125H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11919-125H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveRegulatoryTCellsExpandedDonor3_CNhs13919_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11919-125H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF432ZEW ENCSR214ZAV Peak bigBed 5 GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 peaks 4 2176 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/df2a94dc-b687-426f-80c1-a0d7e5f0cde2/ENCFF432ZEW.bigBed\ labelFields none\ longLabel GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR214ZAV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF432ZEW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF154CNA ENCSR269SIA Peak bigBed 5 G401 DNase peak 4 2176 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/797f5614-f33e-4509-a99c-1a22e3657137/ENCFF154CNA.bigBed\ color 6,218,147\ labelFields none\ longLabel G401 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR269SIA Peak\ track wgEncodeReg4Epigenetics_ENCFF154CNA\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_fwd Cd4+cd25+cd45ra-D1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward 0 2177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_fwd Cd4+cd25+cd45ra-D1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward 1 2177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF817POK ENCSR214ZAV Signal bigWig GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 ENCSR214ZAV signal 2 2177 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/7602caac-f603-42f8-b850-c6ab1f4cf754/ENCFF817POK.bigWig\ color 127,133,209\ longLabel GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 ENCSR214ZAV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR214ZAV Signal\ track wgEncodeReg4TfChip_ENCFF817POK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF364UAO ENCSR269SIA Signal bigWig G401 DNase signal 2 2177 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/caca793f-9df9-40bc-820d-3ba5fa962950/ENCFF364UAO.bigWig\ color 6,218,147\ longLabel G401 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR269SIA Signal\ track wgEncodeReg4Epigenetics_ENCFF364UAO\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_rev Cd4+cd25+cd45ra-D1- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse 0 2178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_rev Cd4+cd25+cd45ra-D1- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse 1 2178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor1.CNhs13195.11782-124A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor1_CNhs13195_11782-124A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11782-124A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor1_CNhs13195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11782-124A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF194VKZ ENCSR217HTK Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2 ATF2 peaks 4 2178 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/7d6c354a-8721-4621-be62-ca5fba3ad25c/ENCFF194VKZ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2 ATF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR217HTK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF194VKZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF366WFI ENCSR270JQK Peak bigBed 5 T-cell female adult 40 years DNase peak 4 2178 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1d356922-d528-4a87-b64e-8b9fef326119/ENCFF366WFI.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR270JQK Peak\ track wgEncodeReg4Epigenetics_ENCFF366WFI\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_fwd Cd4+cd25+cd45ra-D2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward 0 2179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_fwd Cd4+cd25+cd45ra-D2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward 1 2179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF599ESN ENCSR217HTK Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2 ATF2 ENCSR217HTK signal 2 2179 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/9578b0a6-8fdd-488c-9482-6fcaac47c8c8/ENCFF599ESN.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ATF2 ATF2 ENCSR217HTK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR217HTK Signal\ track wgEncodeReg4TfChip_ENCFF599ESN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF370PCW ENCSR270JQK Signal bigWig T-cell female adult 40 years DNase signal 2 2179 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/cb27e9e7-194d-401e-84a9-4700d57701dd/ENCFF370PCW.bigWig\ color 6,218,147\ longLabel T-cell female adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR270JQK Signal\ track wgEncodeReg4Epigenetics_ENCFF370PCW\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_rev Cd4+cd25+cd45ra-D2- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse 0 2180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_rev Cd4+cd25+cd45ra-D2- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse 1 2180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor2.CNhs13206.11797-124C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor2_CNhs13206_11797-124C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11797-124C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor2_CNhs13206_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11797-124C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF432ZCY ENCSR217KAL Peak bigBed 5 Esophagus muscularis mucosa tissue male adult (37 years) POLR2AphosphoS5 peaks 4 2180 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/43a9bce1-6053-4929-bafe-aea1227d777d/ENCFF432ZCY.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR217KAL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF432ZCY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF235CPK ENCSR270KFY Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 2180 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/f62cd238-914c-4d30-bae8-9e6c5834f633/ENCFF235CPK.bigBed\ color 0,176,240\ labelFields none\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR270KFY Peak\ track wgEncodeReg4Epigenetics_ENCFF235CPK\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_fwd Cd4+cd25+cd45ra-D3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward 0 2181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_fwd Cd4+cd25+cd45ra-D3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward 1 2181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF084DXP ENCSR217KAL Signal bigWig Esophagus muscularis mucosa tissue male adult (37 years) POLR2AphosphoS5 ENCSR217KAL signal 2 2181 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/724754ea-2d6e-4a05-82a0-9d16b2098b31/ENCFF084DXP.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) POLR2AphosphoS5 ENCSR217KAL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR217KAL Signal\ track wgEncodeReg4TfChip_ENCFF084DXP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF258OMT ENCSR270KFY Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 2181 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/d8fa7e71-1880-40b0-903c-9b2c9e679aa2/ENCFF258OMT.bigWig\ color 0,176,240\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR270KFY Signal\ track wgEncodeReg4Epigenetics_ENCFF258OMT\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_rev Cd4+cd25+cd45ra-D3- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse 0 2182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_rev Cd4+cd25+cd45ra-D3- bigWig CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse 1 2182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%2c%20donor3.CNhs13538.11908-125F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells, donor3_CNhs13538_11908-125F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11908-125F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsDonor3_CNhs13538_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11908-125F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF893BGV ENCSR217WRC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens TSHZ1 TSHZ1 peaks 4 2182 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/cfd54717-10a6-4441-aa61-a3119e81cd84/ENCFF893BGV.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens TSHZ1 TSHZ1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR217WRC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF893BGV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF625UAL ENCSR270LZE Peak bigBed 5 Muscle of arm tissue male embryo 113 days DNase peak 4 2182 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ab91f923-4464-44f0-9aee-5dab096a2442/ENCFF625UAL.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue male embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR270LZE Peak\ track wgEncodeReg4Epigenetics_ENCFF625UAL\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_fwd Cd4+cd25+cd45ra-ExpdD1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward 0 2183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_fwd Cd4+cd25+cd45ra-ExpdD1+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward 1 2183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF923CEX ENCSR217WRC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens TSHZ1 TSHZ1 ENCSR217WRC signal 2 2183 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/bd38459b-2bee-4375-8a3e-ad6bf1107f12/ENCFF923CEX.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens TSHZ1 TSHZ1 ENCSR217WRC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR217WRC Signal\ track wgEncodeReg4TfChip_ENCFF923CEX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF935RUX ENCSR270LZE Signal bigWig Muscle of arm tissue male embryo 113 days DNase signal 2 2183 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/84523e13-fcd9-4c40-abe3-709813cdbb1f/ENCFF935RUX.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue male embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR270LZE Signal\ track wgEncodeReg4Epigenetics_ENCFF935RUX\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_rev Cd4+cd25+cd45ra-ExpdD1- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse 0 2184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_rev Cd4+cd25+cd45ra-ExpdD1- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse 1 2184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor1.CNhs13204.11794-124C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1_CNhs13204_11794-124C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11794-124C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor1_CNhs13204_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11794-124C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF402JZW ENCSR218GSN Peak bigBed 5 HEK293T ZFX peaks 4 2184 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/2bce643f-172b-4b53-b7ba-ac19317982ba/ENCFF402JZW.bigBed\ labelFields none\ longLabel HEK293T ZFX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR218GSN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF402JZW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF148BQA ENCSR271QID Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 2184 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/60e0359b-fe99-4074-8038-30348513c629/ENCFF148BQA.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR271QID Peak\ track wgEncodeReg4Epigenetics_ENCFF148BQA\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_fwd Cd4+cd25+cd45ra-ExpdD2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward 0 2185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_fwd Cd4+cd25+cd45ra-ExpdD2+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward 1 2185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF625XHP ENCSR218GSN Signal bigWig HEK293T ZFX ENCSR218GSN signal 2 2185 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/49cbc86c-0767-40f9-93ef-e1a67422f3d2/ENCFF625XHP.bigWig\ color 92,161,153\ longLabel HEK293T ZFX ENCSR218GSN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR218GSN Signal\ track wgEncodeReg4TfChip_ENCFF625XHP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF580HLW ENCSR271QID Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2185 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/a8591001-4cc1-4aae-acad-a6b155b4a7d2/ENCFF580HLW.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR271QID Signal\ track wgEncodeReg4Epigenetics_ENCFF580HLW\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_rev Cd4+cd25+cd45ra-ExpdD2- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse 0 2186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_rev Cd4+cd25+cd45ra-ExpdD2- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse 1 2186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor2.CNhs13811.11916-125G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor2_CNhs13811_11916-125G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11916-125G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor2_CNhs13811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11916-125G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF182LWK ENCSR218MVT Peak bigBed 5 Neural crest cell CTCF peaks 4 2186 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/db5f0863-7677-41d2-b2fa-69bb4ac76146/ENCFF182LWK.bigBed\ labelFields none\ longLabel Neural crest cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR218MVT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF182LWK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF913CNI ENCSR271QSV Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult DNase peak 4 2186 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/962bf523-fb71-4c78-ab62-385864dc4b7d/ENCFF913CNI.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive male adult DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR271QSV Peak\ track wgEncodeReg4Epigenetics_ENCFF913CNI\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_fwd Cd4+cd25+cd45ra-ExpdD3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward 0 2187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_fwd Cd4+cd25+cd45ra-ExpdD3+ bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward 1 2187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF192FOK ENCSR218MVT Signal bigWig Neural crest cell CTCF ENCSR218MVT signal 2 2187 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/88473503-1ab9-4225-b9a3-e97739b06bc2/ENCFF192FOK.bigWig\ color 118,158,101\ longLabel Neural crest cell CTCF ENCSR218MVT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR218MVT Signal\ track wgEncodeReg4TfChip_ENCFF192FOK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF411LUQ ENCSR271QSV Signal bigWig Common myeloid progenitor, CD34-positive male adult DNase signal 2 2187 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/9b67e732-1a24-4787-9d03-affe3fd99bab/ENCFF411LUQ.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive male adult DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR271QSV Signal\ track wgEncodeReg4Epigenetics_ENCFF411LUQ\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_rev Cd4+cd25+cd45ra-ExpdD3- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse 0 2188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25+cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_rev Cd4+cd25+cd45ra-ExpdD3- bigWig CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse 1 2188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25%2bCD45RA-%20memory%20regulatory%20T%20cells%20expanded%2c%20donor3.CNhs13812.11920-125H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25+CD45RA- memory regulatory T cells expanded, donor3_CNhs13812_11920-125H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11920-125H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25+cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryRegulatoryTCellsExpandedDonor3_CNhs13812_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11920-125H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF855OUB ENCSR218QFN Peak bigBed 5 PC-3 EZH2 peaks 4 2188 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/90f6ec22-9bd3-4010-8339-53c503b2efd5/ENCFF855OUB.bigBed\ labelFields none\ longLabel PC-3 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR218QFN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF855OUB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF703QQR ENCSR272QSF Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K4me3 peak 4 2188 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/2cceff86-3200-4f4a-af3f-76f7b6e6b17d/ENCFF703QQR.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR272QSF Peak\ track wgEncodeReg4Epigenetics_ENCFF703QQR\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_fwd Cd4+cd25-cd45ra+D1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward 0 2189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_fwd Cd4+cd25-cd45ra+D1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward 1 2189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF943TBI ENCSR218QFN Signal bigWig PC-3 EZH2 ENCSR218QFN signal 2 2189 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/f8ab4f57-5aac-41a8-9b74-df942f86bcdd/ENCFF943TBI.bigWig\ color 140,140,140\ longLabel PC-3 EZH2 ENCSR218QFN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR218QFN Signal\ track wgEncodeReg4TfChip_ENCFF943TBI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF503BFJ ENCSR272QSF Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K4me3 signal 2 2189 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/4d9c6875-49c7-4570-92d6-66bbd7ab0880/ENCFF503BFJ.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR272QSF Signal\ track wgEncodeReg4Epigenetics_ENCFF503BFJ\ type bigWig\ visibility full\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_rev Cd4+cd25-cd45ra+D1- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse 0 2190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_rev Cd4+cd25-cd45ra+D1- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse 1 2190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor1.CNhs13223.11784-124B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor1_CNhs13223_11784-124B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11784-124B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor1_CNhs13223_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11784-124B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF739JDE ENCSR219BXP Peak bigBed 5 K562 DPF2 peaks 4 2190 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/d1a4af16-c32e-4f3c-a3a6-9ba91c8324a0/ENCFF739JDE.bigBed\ labelFields none\ longLabel K562 DPF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219BXP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF739JDE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF403QJU ENCSR272RQX Peak bigBed 5 Muscle of leg tissue female embryo 113 days DNase peak 4 2190 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/36ce1099-f2e9-4a8f-9df9-cf9b70abae90/ENCFF403QJU.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue female embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR272RQX Peak\ track wgEncodeReg4Epigenetics_ENCFF403QJU\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_fwd Cd4+cd25-cd45ra+D2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward 0 2191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_fwd Cd4+cd25-cd45ra+D2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward 1 2191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF949ZMY ENCSR219BXP Signal bigWig K562 DPF2 ENCSR219BXP signal 2 2191 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/01b55460-75b4-44c2-8fa9-5b5379019e64/ENCFF949ZMY.bigWig\ color 254,75,173\ longLabel K562 DPF2 ENCSR219BXP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219BXP Signal\ track wgEncodeReg4TfChip_ENCFF949ZMY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF835ERC ENCSR272RQX Signal bigWig Muscle of leg tissue female embryo 113 days DNase signal 2 2191 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/bf9bcbab-5dda-4d20-aa67-34591e1023b7/ENCFF835ERC.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR272RQX Signal\ track wgEncodeReg4Epigenetics_ENCFF835ERC\ type bigWig\ visibility full\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_rev Cd4+cd25-cd45ra+D2- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse 0 2192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_rev Cd4+cd25-cd45ra+D2- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse 1 2192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor2.CNhs13205.11795-124C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor2_CNhs13205_11795-124C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11795-124C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor2_CNhs13205_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11795-124C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF465WAR ENCSR219GUP Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H10 treated with 6 μM all-trans-retinoic acid for 48 hours ZC3H10 peaks 4 2192 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/15/12f63e3d-c673-4d79-b739-dd6b1acfadb8/ENCFF465WAR.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H10 treated with 6 μM all-trans-retinoic acid for 48 hours ZC3H10 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219GUP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF465WAR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF480SWD ENCSR272VRX Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 2192 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/8505aa5d-22c1-40df-8e19-e7d24eb586c4/ENCFF480SWD.bigBed\ color 255,0,0\ longLabel Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR272VRX Peak\ track wgEncodeReg4Epigenetics_ENCFF480SWD\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_fwd Cd4+cd25-cd45ra+D3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward 0 2193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_fwd Cd4+cd25-cd45ra+D3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward 1 2193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF354KQM ENCSR219GUP Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H10 treated with 6 μM all-trans-retinoic acid for 48 hours ZC3H10 ENCSR219GUP signal 2 2193 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/15/3b0a2dfa-b16c-420a-a4d3-dc770dc0ec88/ENCFF354KQM.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H10 treated with 6 μM all-trans-retinoic acid for 48 hours ZC3H10 ENCSR219GUP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219GUP Signal\ track wgEncodeReg4TfChip_ENCFF354KQM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF546IYU ENCSR272VRX Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 2193 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/143c0455-4ade-4f3c-94d9-0181871e29c8/ENCFF546IYU.bigWig\ color 255,0,0\ longLabel Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR272VRX Signal\ track wgEncodeReg4Epigenetics_ENCFF546IYU\ type bigWig\ visibility full\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_rev Cd4+cd25-cd45ra+D3- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse 0 2194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_rev Cd4+cd25-cd45ra+D3- bigWig CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse 1 2194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%2c%20donor3.CNhs13512.11906-125F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells, donor3_CNhs13512_11906-125F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11906-125F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsDonor3_CNhs13512_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11906-125F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF948XBE ENCSR219MKK Peak bigBed 5 HeLa-S3 DEK peaks 4 2194 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6af64ae1-abf4-4192-8cfd-9afd6fddfaea/ENCFF948XBE.bigBed\ labelFields none\ longLabel HeLa-S3 DEK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219MKK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF948XBE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF358AVR ENCSR273GCF Peak bigBed 5 Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak 4 2194 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/dec0fc7c-d7fd-46c4-bd0e-02b2dec7ebfa/ENCFF358AVR.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR273GCF Peak\ track wgEncodeReg4Epigenetics_ENCFF358AVR\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_fwd Cd4+cd25-cd45ra+ExpdD1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward 0 2195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_fwd Cd4+cd25-cd45ra+ExpdD1+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward 1 2195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF409EXM ENCSR219MKK Signal bigWig HeLa-S3 DEK ENCSR219MKK signal 2 2195 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/b4317ce7-e2ef-4e62-8fdb-d0068675e05d/ENCFF409EXM.bigWig\ color 186,111,165\ longLabel HeLa-S3 DEK ENCSR219MKK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219MKK Signal\ track wgEncodeReg4TfChip_ENCFF409EXM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF851EQR ENCSR273GCF Signal bigWig Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal 2 2195 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/7cef0b6c-92e5-4605-becc-3c2e6b172c5d/ENCFF851EQR.bigWig\ color 6,218,147\ longLabel Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR273GCF Signal\ track wgEncodeReg4Epigenetics_ENCFF851EQR\ type bigWig\ visibility full\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_rev Cd4+cd25-cd45ra+ExpdD1- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse 0 2196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_rev Cd4+cd25-cd45ra+ExpdD1- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse 1 2196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13202.11791-124B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor1_CNhs13202_11791-124B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11791-124B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor1_CNhs13202_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11791-124B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF486CCX ENCSR219NRT Peak bigBed 5 HepG2 GTF2F1 peaks 4 2196 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4e5ef56d-70f5-47cf-8daa-88b9de89d8a1/ENCFF486CCX.bigBed\ labelFields none\ longLabel HepG2 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219NRT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF486CCX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF081PRY ENCSR273USD Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase peak 4 2196 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c4c8cf7f-8757-4a9d-a32a-e13bc5a87f3a/ENCFF081PRY.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR273USD Peak\ track wgEncodeReg4Epigenetics_ENCFF081PRY\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_fwd Cd4+cd25-cd45ra+ExpdD2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward 0 2197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_fwd Cd4+cd25-cd45ra+ExpdD2+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward 1 2197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF440CFP ENCSR219NRT Signal bigWig HepG2 GTF2F1 ENCSR219NRT signal 2 2197 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/130b6d77-32eb-4389-be7d-df6d22d49c34/ENCFF440CFP.bigWig\ color 137,152,82\ longLabel HepG2 GTF2F1 ENCSR219NRT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR219NRT Signal\ track wgEncodeReg4TfChip_ENCFF440CFP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF073UAS ENCSR273USD Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal 2 2197 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/3a394925-0e77-46e8-b744-f34d2b473102/ENCFF073UAS.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR273USD Signal\ track wgEncodeReg4Epigenetics_ENCFF073UAS\ type bigWig\ visibility full\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_rev Cd4+cd25-cd45ra+ExpdD2- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse 0 2198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_rev Cd4+cd25-cd45ra+ExpdD2- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse 1 2198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13813.11913-125G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor2_CNhs13813_11913-125G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11913-125G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor2_CNhs13813_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11913-125G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF268DGX ENCSR220AQM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A GTF3A peaks 4 2198 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/641fd464-038a-4e38-82b5-4177b2b0c459/ENCFF268DGX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A GTF3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR220AQM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF268DGX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF571GBW ENCSR274FZD Peak bigBed 5 Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 2198 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/a4e33a24-fa5b-43bd-acd6-797525692535/ENCFF571GBW.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274FZD Peak\ track wgEncodeReg4Epigenetics_ENCFF571GBW\ type bigBed 5\ visibility squish\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_fwd Cd4+cd25-cd45ra+ExpdD3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward 0 2199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_fwd Cd4+cd25-cd45ra+ExpdD3+ bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward 1 2199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF314EYW ENCSR220AQM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A GTF3A ENCSR220AQM signal 2 2199 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/67ebcb3f-22c8-47ff-b479-28546b7b11b2/ENCFF314EYW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A GTF3A ENCSR220AQM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR220AQM Signal\ track wgEncodeReg4TfChip_ENCFF314EYW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF431VJE ENCSR274FZD Signal bigWig Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2199 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/cf155737-e05f-408c-ba1e-13da5e5efc9e/ENCFF431VJE.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274FZD Signal\ track wgEncodeReg4Epigenetics_ENCFF431VJE\ type bigWig\ visibility full\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_rev Cd4+cd25-cd45ra+ExpdD3- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse 0 2200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_rev Cd4+cd25-cd45ra+ExpdD3- bigWig CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse 1 2200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA%2b%20naive%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13814.11917-125G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3_CNhs13814_11917-125G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11917-125G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra+ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RANaiveConventionalTCellsExpandedDonor3_CNhs13814_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11917-125G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF046WLD ENCSR220YXI Peak bigBed 5 K562 PRPF4 peaks 4 2200 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/97d0749d-e199-4c87-b51b-9e0cb65ace69/ENCFF046WLD.bigBed\ labelFields none\ longLabel K562 PRPF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR220YXI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF046WLD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF791OFW ENCSR274HDQ Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 2200 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/d482f3f9-1f2b-4035-af90-a772f284aa9f/ENCFF791OFW.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274HDQ Peak\ track wgEncodeReg4Epigenetics_ENCFF791OFW\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_fwd Cd4+cd25-cd45ra-D3+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward 0 2201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_fwd Cd4+cd25-cd45ra-D3+ bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward 1 2201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF106XAK ENCSR220YXI Signal bigWig K562 PRPF4 ENCSR220YXI signal 2 2201 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4ac1da46-798d-4550-89c0-bd60c717a8c7/ENCFF106XAK.bigWig\ color 254,75,173\ longLabel K562 PRPF4 ENCSR220YXI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR220YXI Signal\ track wgEncodeReg4TfChip_ENCFF106XAK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF679AWS ENCSR274HDQ Signal bigWig Middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 2201 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/d88f5ab8-49fd-470a-90a2-38048d8c34ec/ENCFF679AWS.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274HDQ Signal\ track wgEncodeReg4Epigenetics_ENCFF679AWS\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_rev Cd4+cd25-cd45ra-D3- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse 0 2202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_rev Cd4+cd25-cd45ra-D3- bigWig CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse 1 2202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%2c%20donor3.CNhs13539.11909-125G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells, donor3_CNhs13539_11909-125G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11909-125G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-D3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsDonor3_CNhs13539_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11909-125G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF217VLV ENCSR221GAN Peak bigBed 5 K562 MBD2 peaks 4 2202 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/d480618c-64c8-480b-aa8a-a6bc2ae32c8b/ENCFF217VLV.bigBed\ labelFields none\ longLabel K562 MBD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR221GAN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF217VLV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF337FUH ENCSR274SDO Peak bigBed 5 Right forelimb tissue male embryo 81 days DNase peak 4 2202 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/99cd3cfc-4e31-4d65-93d9-500172acbc9c/ENCFF337FUH.bigBed\ color 6,218,147\ labelFields none\ longLabel Right forelimb tissue male embryo 81 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274SDO Peak\ track wgEncodeReg4Epigenetics_ENCFF337FUH\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_fwd Cd4+cd25-cd45ra-ExpdD1+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward 0 2203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_fwd Cd4+cd25-cd45ra-ExpdD1+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward 1 2203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF198XRJ ENCSR221GAN Signal bigWig K562 MBD2 ENCSR221GAN signal 2 2203 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/bbbf335e-8b8a-4962-92ce-d6cc65eb2948/ENCFF198XRJ.bigWig\ color 254,75,173\ longLabel K562 MBD2 ENCSR221GAN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR221GAN Signal\ track wgEncodeReg4TfChip_ENCFF198XRJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF879GMI ENCSR274SDO Signal bigWig Right forelimb tissue male embryo 81 days DNase signal 2 2203 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/7795c478-7827-4880-8be7-c6c0096cb189/ENCFF879GMI.bigWig\ color 6,218,147\ longLabel Right forelimb tissue male embryo 81 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274SDO Signal\ track wgEncodeReg4Epigenetics_ENCFF879GMI\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_rev Cd4+cd25-cd45ra-ExpdD1- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse 0 2204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_rev Cd4+cd25-cd45ra-ExpdD1- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse 1 2204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor1.CNhs13215.11792-124C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor1_CNhs13215_11792-124C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11792-124C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor1_CNhs13215_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11792-124C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF086DZH ENCSR222SQE Peak bigBed 5 Sigmoid colon tissue male adult (54 years) CTCF peaks 4 2204 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/dc337d5e-9d80-4183-b2b5-7f913658921f/ENCFF086DZH.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR222SQE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF086DZH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF996CQM ENCSR274VSS Peak bigBed 5 CD8-positive, alpha-beta memory T cell H3K27ac peak 4 2204 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/cfccd22e-1637-4dbc-a179-275d5d327ffd/ENCFF996CQM.bigBed\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274VSS Peak\ track wgEncodeReg4Epigenetics_ENCFF996CQM\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_fwd Cd4+cd25-cd45ra-ExpdD2+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward 0 2205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_fwd Cd4+cd25-cd45ra-ExpdD2+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward 1 2205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF985EXZ ENCSR222SQE Signal bigWig Sigmoid colon tissue male adult (54 years) CTCF ENCSR222SQE signal 2 2205 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/174c1baa-efaa-4b6c-833a-82d20492489b/ENCFF985EXZ.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (54 years) CTCF ENCSR222SQE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR222SQE Signal\ track wgEncodeReg4TfChip_ENCFF985EXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF376ATD ENCSR274VSS Signal bigWig CD8-positive, alpha-beta memory T cell H3K27ac signal 2 2205 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/09f7eb2f-c34f-4550-8b43-4896ea94bcce/ENCFF376ATD.bigWig\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274VSS Signal\ track wgEncodeReg4Epigenetics_ENCFF376ATD\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_rev Cd4+cd25-cd45ra-ExpdD2- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse 0 2206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_rev Cd4+cd25-cd45ra-ExpdD2- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse 1 2206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor2.CNhs13920.11914-125G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor2_CNhs13920_11914-125G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11914-125G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor2_CNhs13920_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11914-125G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF145WQQ ENCSR223TAV Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM10 PRDM10 peaks 4 2206 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/d44485e3-ee9a-4ace-91a6-1281627107de/ENCFF145WQQ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM10 PRDM10 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR223TAV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF145WQQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF871AMJ ENCSR274XTS Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak 4 2206 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/610ae158-6c30-4a9f-8bfc-50e742b096b7/ENCFF871AMJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274XTS Peak\ track wgEncodeReg4Epigenetics_ENCFF871AMJ\ type bigBed 5\ visibility squish\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_fwd Cd4+cd25-cd45ra-ExpdD3+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward 0 2207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_fwd Cd4+cd25-cd45ra-ExpdD3+ bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward 1 2207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF121WIY ENCSR223TAV Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM10 PRDM10 ENCSR223TAV signal 2 2207 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/642dc7f5-0447-4d18-8b33-98c563eebf56/ENCFF121WIY.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM10 PRDM10 ENCSR223TAV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR223TAV Signal\ track wgEncodeReg4TfChip_ENCFF121WIY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF762HKP ENCSR274XTS Signal bigWig Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal 2 2207 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/dafd27f2-3b92-47c2-a799-e832b22577db/ENCFF762HKP.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR274XTS Signal\ track wgEncodeReg4Epigenetics_ENCFF762HKP\ type bigWig\ visibility full\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_rev Cd4+cd25-cd45ra-ExpdD3- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse 0 2208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+cd25-cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_rev Cd4+cd25-cd45ra-ExpdD3- bigWig CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse 1 2208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2bCD25-CD45RA-%20memory%20conventional%20T%20cells%20expanded%2c%20donor3.CNhs13921.11918-125H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+CD25-CD45RA- memory conventional T cells expanded, donor3_CNhs13921_11918-125H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11918-125H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd4+cd25-cd45ra-ExpdD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4CD25CD45RAMemoryConventionalTCellsExpandedDonor3_CNhs13921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11918-125H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF957XYN ENCSR224NFP Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF426 ZNF426 peaks 4 2208 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/1d124b1d-9fd0-4d82-933c-30058a6222d6/ENCFF957XYN.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF426 ZNF426 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224NFP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF957XYN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF411XAQ ENCSR275EAG Peak bigBed 5 Peripheral blood mononuclear cell male adult 39 years H3K4me3 peak 4 2208 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/386c49bf-c6aa-4816-9cf8-fc0ed978093e/ENCFF411XAQ.bigBed\ color 255,0,0\ longLabel Peripheral blood mononuclear cell male adult 39 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR275EAG Peak\ track wgEncodeReg4Epigenetics_ENCFF411XAQ\ type bigBed 5\ visibility squish\ CD4TCellsDonor1_CNhs10853_ctss_fwd Cd4+TCellsD1+ bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward 0 2209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor1_CNhs10853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_tpm_fwd Cd4+TCellsD1+ bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward 1 2209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor1_CNhs10853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF209FXA ENCSR224NFP Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF426 ZNF426 ENCSR224NFP signal 2 2209 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/247aab11-60be-4b40-ab4a-74fbc14ec89b/ENCFF209FXA.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF426 ZNF426 ENCSR224NFP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224NFP Signal\ track wgEncodeReg4TfChip_ENCFF209FXA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF986YFL ENCSR275EAG Signal bigWig Peripheral blood mononuclear cell male adult 39 years H3K4me3 signal 2 2209 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3604e130-6e18-4d7b-86a1-c55efc182b9f/ENCFF986YFL.bigWig\ color 255,0,0\ longLabel Peripheral blood mononuclear cell male adult 39 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR275EAG Signal\ track wgEncodeReg4Epigenetics_ENCFF986YFL\ type bigWig\ visibility full\ CD4TCellsDonor1_CNhs10853_ctss_rev Cd4+TCellsD1- bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse 0 2210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor1_CNhs10853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor1_CNhs10853_tpm_rev Cd4+TCellsD1- bigWig CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse 1 2210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor1.CNhs10853.11225-116C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor1_CNhs10853_11225-116C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11225-116C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor1_CNhs10853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11225-116C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF809EHH ENCSR224NQI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF414 ZNF414 peaks 4 2210 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/52b2a2ea-2171-4954-bb43-1265cb39b6c3/ENCFF809EHH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF414 ZNF414 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224NQI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF809EHH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF576ZVM ENCSR275LCF Peak bigBed 5 GM21786 ATAC peak 4 2210 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/d8939c86-b2e9-434e-ad63-c3d4d0204060/ENCFF576ZVM.bigBed\ color 2,199,185\ longLabel GM21786 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR275LCF Peak\ track wgEncodeReg4Epigenetics_ENCFF576ZVM\ type bigBed 5\ visibility squish\ CD4TCellsDonor2_CNhs11955_ctss_fwd Cd4+TCellsD2+ bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward 0 2211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor2_CNhs11955_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_tpm_fwd Cd4+TCellsD2+ bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward 1 2211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor2_CNhs11955_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF791UNN ENCSR224NQI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF414 ZNF414 ENCSR224NQI signal 2 2211 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/0dd88e3d-2a67-43f8-9a5e-df0ffbcdebc0/ENCFF791UNN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF414 ZNF414 ENCSR224NQI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224NQI Signal\ track wgEncodeReg4TfChip_ENCFF791UNN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF472UIU ENCSR275LCF Signal bigWig GM21786 ATAC signal 2 2211 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/61814755-bb47-46b8-ba28-5c8693113aff/ENCFF472UIU.bigWig\ color 2,199,185\ longLabel GM21786 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR275LCF Signal\ track wgEncodeReg4Epigenetics_ENCFF472UIU\ type bigWig\ visibility full\ CD4TCellsDonor2_CNhs11955_ctss_rev Cd4+TCellsD2- bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse 0 2212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor2_CNhs11955_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ CD4TCellsDonor2_CNhs11955_tpm_rev Cd4+TCellsD2- bigWig CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse 1 2212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor2.CNhs11955.11306-117C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor2_CNhs11955_11306-117C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11306-117C1 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor2_CNhs11955_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11306-117C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF839FUF ENCSR224QDY Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF121 ZNF121 peaks 4 2212 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/2f78cf94-ab85-4aac-a236-1a9cbcdfaef1/ENCFF839FUF.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF121 ZNF121 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224QDY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF839FUF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF076OSQ ENCSR275NCH Peak bigBed 5 PC-3 H3K4me3 peak 4 2212 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5dd92e2b-bca8-4b21-85b6-ed4542675db9/ENCFF076OSQ.bigBed\ color 255,0,0\ longLabel PC-3 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR275NCH Peak\ track wgEncodeReg4Epigenetics_ENCFF076OSQ\ type bigBed 5\ visibility squish\ CD4TCellsDonor3_CNhs11998_ctss_fwd Cd4+TCellsD3+ bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward 0 2213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor3_CNhs11998_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_tpm_fwd Cd4+TCellsD3+ bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward 1 2213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD4TCellsDonor3_CNhs11998_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF895UYP ENCSR224QDY Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF121 ZNF121 ENCSR224QDY signal 2 2213 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/da195599-8ffe-48e2-8dcc-c40f53b2d6a6/ENCFF895UYP.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF121 ZNF121 ENCSR224QDY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224QDY Signal\ track wgEncodeReg4TfChip_ENCFF895UYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF319OET ENCSR275NCH Signal bigWig PC-3 H3K4me3 signal 2 2213 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/4fcc8135-fe96-4c9b-9a15-08fdfa93ca1f/ENCFF319OET.bigWig\ color 255,0,0\ longLabel PC-3 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR275NCH Signal\ track wgEncodeReg4Epigenetics_ENCFF319OET\ type bigWig\ visibility full\ CD4TCellsDonor3_CNhs11998_ctss_rev Cd4+TCellsD3- bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse 0 2214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd4+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor3_CNhs11998_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ CD4TCellsDonor3_CNhs11998_tpm_rev Cd4+TCellsD3- bigWig CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse 1 2214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD4%2b%20T%20Cells%2c%20donor3.CNhs11998.11382-118B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD4+ T Cells, donor3_CNhs11998_11382-118B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11382-118B5 sequence_tech=hCAGE\ parent TSS_activity_TPM on\ shortLabel Cd4+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD4TCellsDonor3_CNhs11998_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11382-118B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF169WSU ENCSR224WWI Peak bigBed 5 Upper lobe of left lung tissue female adult (53 years) CTCF peaks 4 2214 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/09/10/3f5fb654-753a-462e-bd23-f4201b1ca419/ENCFF169WSU.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224WWI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF169WSU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF466VVJ ENCSR276BXF Peak bigBed 5 Mucosa of rectum tissue female adult 50 years H3K4me3 peak 4 2214 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/36378745-19a7-47f1-8efc-0cb0a8cb70c2/ENCFF466VVJ.bigBed\ color 255,0,0\ longLabel Mucosa of rectum tissue female adult 50 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR276BXF Peak\ track wgEncodeReg4Epigenetics_ENCFF466VVJ\ type bigBed 5\ visibility squish\ CD8TCellsDonor1_CNhs10854_ctss_fwd Cd8+TCellsD1+ bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward 0 2215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor1_CNhs10854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_tpm_fwd Cd8+TCellsD1+ bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward 1 2215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor1_CNhs10854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF543MYI ENCSR224WWI Signal bigWig Upper lobe of left lung tissue female adult (53 years) CTCF ENCSR224WWI signal 2 2215 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/5bb13bdc-5e9b-4009-91ba-6a89f382788a/ENCFF543MYI.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (53 years) CTCF ENCSR224WWI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR224WWI Signal\ track wgEncodeReg4TfChip_ENCFF543MYI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF120TOC ENCSR276BXF Signal bigWig Mucosa of rectum tissue female adult 50 years H3K4me3 signal 2 2215 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/21052260-e6a4-4389-9e67-df6847f7468d/ENCFF120TOC.bigWig\ color 255,0,0\ longLabel Mucosa of rectum tissue female adult 50 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR276BXF Signal\ track wgEncodeReg4Epigenetics_ENCFF120TOC\ type bigWig\ visibility full\ CD8TCellsDonor1_CNhs10854_ctss_rev Cd8+TCellsD1- bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse 0 2216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor1_CNhs10854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor1_CNhs10854_tpm_rev Cd8+TCellsD1- bigWig CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse 1 2216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor1.CNhs10854.11226-116C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor1_CNhs10854_11226-116C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11226-116C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor1_CNhs10854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11226-116C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF163BBN ENCSR225KOS Peak bigBed 5 Brain organoid female embryo (5 days): 180 days post differentiation CTCF peaks 4 2216 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/140fe540-df33-490a-b7f9-9322320fe58b/ENCFF163BBN.bigBed\ labelFields none\ longLabel Brain organoid female embryo (5 days): 180 days post differentiation CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225KOS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF163BBN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF054QVM ENCSR276ITP Peak bigBed 5 Sigmoid colon tissue female adult 53 years DNase peak 4 2216 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/b149fa07-4dce-4d7e-9ea9-6e1878061f59/ENCFF054QVM.bigBed\ color 6,218,147\ labelFields none\ longLabel Sigmoid colon tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR276ITP Peak\ track wgEncodeReg4Epigenetics_ENCFF054QVM\ type bigBed 5\ visibility squish\ CD8TCellsDonor2_CNhs11956_ctss_fwd Cd8+TCellsD2+ bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward 0 2217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor2_CNhs11956_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_tpm_fwd Cd8+TCellsD2+ bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward 1 2217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor2_CNhs11956_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF192VBR ENCSR225KOS Signal bigWig Brain organoid female embryo (5 days): 180 days post differentiation CTCF ENCSR225KOS signal 2 2217 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/14d66944-7c15-4ae1-850e-80cf8086b141/ENCFF192VBR.bigWig\ color 155,155,18\ longLabel Brain organoid female embryo (5 days): 180 days post differentiation CTCF ENCSR225KOS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225KOS Signal\ track wgEncodeReg4TfChip_ENCFF192VBR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF299OOV ENCSR276ITP Signal bigWig Sigmoid colon tissue female adult 53 years DNase signal 2 2217 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/b59e90a4-3840-452d-bf52-398c68b204ef/ENCFF299OOV.bigWig\ color 6,218,147\ longLabel Sigmoid colon tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR276ITP Signal\ track wgEncodeReg4Epigenetics_ENCFF299OOV\ type bigWig\ visibility full\ CD8TCellsDonor2_CNhs11956_ctss_rev Cd8+TCellsD2- bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse 0 2218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor2_CNhs11956_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ CD8TCellsDonor2_CNhs11956_tpm_rev Cd8+TCellsD2- bigWig CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse 1 2218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor2.CNhs11956.11307-117C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor2_CNhs11956_11307-117C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11307-117C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor2_CNhs11956_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11307-117C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF461YDT ENCSR225OKX Peak bigBed 5 Omental fat pad tissue female adult (51 years) CTCF peaks 4 2218 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4a401900-df2f-4348-b8e3-af6c698ef73e/ENCFF461YDT.bigBed\ labelFields none\ longLabel Omental fat pad tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225OKX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF461YDT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF328UFE ENCSR276MDV Peak bigBed 5 Head of caudate nucleus tissue male adult 87 years DNase peak 4 2218 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/fba52d69-ea83-4c24-a7f3-c43b19a799c2/ENCFF328UFE.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR276MDV Peak\ track wgEncodeReg4Epigenetics_ENCFF328UFE\ type bigBed 5\ visibility squish\ CD8TCellsDonor3_CNhs11999_ctss_fwd Cd8+TCellsD3+ bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward 0 2219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor3_CNhs11999_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_tpm_fwd Cd8+TCellsD3+ bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward 1 2219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CD8TCellsDonor3_CNhs11999_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF501ILD ENCSR225OKX Signal bigWig Omental fat pad tissue female adult (51 years) CTCF ENCSR225OKX signal 2 2219 255 119 39 255 187 147 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/3dec0d3e-c7cc-4a9c-a637-99471b3be8da/ENCFF501ILD.bigWig\ color 255,119,39\ longLabel Omental fat pad tissue female adult (51 years) CTCF ENCSR225OKX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225OKX Signal\ track wgEncodeReg4TfChip_ENCFF501ILD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF941ZIR ENCSR276MDV Signal bigWig Head of caudate nucleus tissue male adult 87 years DNase signal 2 2219 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/f9712b6e-f0bb-4bbb-bc43-3bd962f94ff4/ENCFF941ZIR.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR276MDV Signal\ track wgEncodeReg4Epigenetics_ENCFF941ZIR\ type bigWig\ visibility full\ CD8TCellsDonor3_CNhs11999_ctss_rev Cd8+TCellsD3- bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse 0 2220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Cd8+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor3_CNhs11999_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ CD8TCellsDonor3_CNhs11999_tpm_rev Cd8+TCellsD3- bigWig CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse 1 2220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/CD8%2b%20T%20Cells%2c%20donor3.CNhs11999.11383-118B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel CD8+ T Cells, donor3_CNhs11999_11383-118B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11383-118B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Cd8+TCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CD8TCellsDonor3_CNhs11999_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11383-118B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF594IPO ENCSR225SLE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF569 ZNF569 peaks 4 2220 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/50e6f188-5347-42ec-9c75-d15db0d707da/ENCFF594IPO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF569 ZNF569 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225SLE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF594IPO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF397ITG ENCSR277KRY Peak bigBed 5 Adrenal gland tissue male adult 37 years DNase peak 4 2220 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/5aa35662-7516-4892-a00b-07e5a5dff411/ENCFF397ITG.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR277KRY Peak\ track wgEncodeReg4Epigenetics_ENCFF397ITG\ type bigBed 5\ visibility squish\ ChondrocyteDeDiffDonor1_CNhs11923_ctss_fwd ChondrocyteDeDiffD1+ bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward 0 2221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor1_CNhs11923_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_tpm_fwd ChondrocyteDeDiffD1+ bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward 1 2221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor1_CNhs11923_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF500DLZ ENCSR225SLE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF569 ZNF569 ENCSR225SLE signal 2 2221 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/5e1cf4a7-f2b4-4fc9-8a1a-53a484d1b402/ENCFF500DLZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF569 ZNF569 ENCSR225SLE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225SLE Signal\ track wgEncodeReg4TfChip_ENCFF500DLZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF801REE ENCSR277KRY Signal bigWig Adrenal gland tissue male adult 37 years DNase signal 2 2221 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/163743f7-fa8a-4b15-8c80-06b480163eef/ENCFF801REE.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR277KRY Signal\ track wgEncodeReg4Epigenetics_ENCFF801REE\ type bigWig\ visibility full\ ChondrocyteDeDiffDonor1_CNhs11923_ctss_rev ChondrocyteDeDiffD1- bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse 0 2222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor1_CNhs11923_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor1_CNhs11923_tpm_rev ChondrocyteDeDiffD1- bigWig Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse 1 2222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor1.CNhs11923.11261-116G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor1_CNhs11923_11261-116G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11261-116G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor1_CNhs11923_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11261-116G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF326DUY ENCSR225YGX Peak bigBed 5 Spleen tissue male adult (54 years) CTCF peaks 4 2222 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/acd706fc-385f-4d2b-9e64-890e8e78fed2/ENCFF326DUY.bigBed\ labelFields none\ longLabel Spleen tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225YGX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF326DUY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF669ENF ENCSR277ZHX Peak bigBed 5 CD14-positive monocyte male adult 21 years and male adult 40 years DNase peak 4 2222 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/05/5962424a-9c16-4f97-9cd3-15e6f3922893/ENCFF669ENF.bigBed\ color 6,218,147\ labelFields none\ longLabel CD14-positive monocyte male adult 21 years and male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR277ZHX Peak\ track wgEncodeReg4Epigenetics_ENCFF669ENF\ type bigBed 5\ visibility squish\ ChondrocyteDeDiffDonor2_CNhs11372_ctss_fwd ChondrocyteDeDiffD2+ bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward 0 2223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor2_CNhs11372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_tpm_fwd ChondrocyteDeDiffD2+ bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward 1 2223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor2_CNhs11372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF353GMS ENCSR225YGX Signal bigWig Spleen tissue male adult (54 years) CTCF ENCSR225YGX signal 2 2223 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/8e001321-b238-455c-b0f6-6c33aee69e9c/ENCFF353GMS.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (54 years) CTCF ENCSR225YGX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR225YGX Signal\ track wgEncodeReg4TfChip_ENCFF353GMS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF881YUR ENCSR277ZHX Signal bigWig CD14-positive monocyte male adult 21 years and male adult 40 years DNase signal 2 2223 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/05/5509b2e7-18f7-4c42-8bf3-08fe43c71bd7/ENCFF881YUR.bigWig\ color 6,218,147\ longLabel CD14-positive monocyte male adult 21 years and male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR277ZHX Signal\ track wgEncodeReg4Epigenetics_ENCFF881YUR\ type bigWig\ visibility full\ ChondrocyteDeDiffDonor2_CNhs11372_ctss_rev ChondrocyteDeDiffD2- bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse 0 2224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor2_CNhs11372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor2_CNhs11372_tpm_rev ChondrocyteDeDiffD2- bigWig Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse 1 2224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor2.CNhs11372.11338-117F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor2_CNhs11372_11338-117F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11338-117F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor2_CNhs11372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11338-117F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF415OYE ENCSR226NRS Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TOX2 treated with 6 μM all-trans-retinoic acid for 48 hours TOX2 peaks 4 2224 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/eafb79ba-8611-4729-922f-b34d2e51f449/ENCFF415OYE.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TOX2 treated with 6 μM all-trans-retinoic acid for 48 hours TOX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR226NRS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF415OYE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF635YIG ENCSR278FHC Peak bigBed 5 Testis tissue male embryo DNase peak 4 2224 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/2acfcd8d-1cbd-46fa-89a1-3dd8fc1b4415/ENCFF635YIG.bigBed\ color 6,218,147\ labelFields none\ longLabel Testis tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278FHC Peak\ track wgEncodeReg4Epigenetics_ENCFF635YIG\ type bigBed 5\ visibility squish\ ChondrocyteDeDiffDonor3_CNhs12020_ctss_fwd ChondrocyteDeDiffD3+ bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward 0 2225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor3_CNhs12020_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_tpm_fwd ChondrocyteDeDiffD3+ bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward 1 2225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteDeDiffDonor3_CNhs12020_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF926DVG ENCSR226NRS Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TOX2 treated with 6 μM all-trans-retinoic acid for 48 hours TOX2 ENCSR226NRS signal 2 2225 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/e98173ef-a50d-466c-a24d-0fa33a717ffc/ENCFF926DVG.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TOX2 treated with 6 μM all-trans-retinoic acid for 48 hours TOX2 ENCSR226NRS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR226NRS Signal\ track wgEncodeReg4TfChip_ENCFF926DVG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF366YAV ENCSR278FHC Signal bigWig Testis tissue male embryo DNase signal 2 2225 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ef17dc3f-a148-4ab8-a3be-a9731fb515e3/ENCFF366YAV.bigWig\ color 6,218,147\ longLabel Testis tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278FHC Signal\ track wgEncodeReg4Epigenetics_ENCFF366YAV\ type bigWig\ visibility full\ ChondrocyteDeDiffDonor3_CNhs12020_ctss_rev ChondrocyteDeDiffD3- bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse 0 2226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteDeDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor3_CNhs12020_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ ChondrocyteDeDiffDonor3_CNhs12020_tpm_rev ChondrocyteDeDiffD3- bigWig Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse 1 2226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20de%20diff%2c%20donor3.CNhs12020.11410-118E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - de diff, donor3_CNhs12020_11410-118E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11410-118E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteDeDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteDeDiffDonor3_CNhs12020_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11410-118E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF815HWK ENCSR226QQM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIA NFIA peaks 4 2226 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/73f6da21-a6c8-4866-af2b-ae8c82419a7d/ENCFF815HWK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIA NFIA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR226QQM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF815HWK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF854YJS ENCSR278FVO Peak bigBed 5 Neuronal stem cell originated from H1 DNase peak 4 2226 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/c471511f-42ee-4c94-9487-9d287b109d0e/ENCFF854YJS.bigBed\ color 6,218,147\ labelFields none\ longLabel Neuronal stem cell originated from H1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278FVO Peak\ track wgEncodeReg4Epigenetics_ENCFF854YJS\ type bigBed 5\ visibility squish\ ChondrocyteReDiffDonor2_CNhs11373_ctss_fwd ChondrocyteReDiffD2+ bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward 0 2227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor2_CNhs11373_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_tpm_fwd ChondrocyteReDiffD2+ bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward 1 2227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor2_CNhs11373_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF960JLO ENCSR226QQM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIA NFIA ENCSR226QQM signal 2 2227 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/baada681-f4e3-4376-88b6-475fb5e0ab9f/ENCFF960JLO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFIA NFIA ENCSR226QQM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR226QQM Signal\ track wgEncodeReg4TfChip_ENCFF960JLO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF287XRW ENCSR278FVO Signal bigWig Neuronal stem cell originated from H1 DNase signal 2 2227 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/83055dc0-21b1-4d84-a881-0914dc61abf4/ENCFF287XRW.bigWig\ color 6,218,147\ longLabel Neuronal stem cell originated from H1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278FVO Signal\ track wgEncodeReg4Epigenetics_ENCFF287XRW\ type bigWig\ visibility full\ ChondrocyteReDiffDonor2_CNhs11373_ctss_rev ChondrocyteReDiffD2- bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse 0 2228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor2_CNhs11373_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor2_CNhs11373_tpm_rev ChondrocyteReDiffD2- bigWig Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse 1 2228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor2.CNhs11373.11339-117F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor2_CNhs11373_11339-117F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11339-117F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor2_CNhs11373_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11339-117F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF706LUI ENCSR227MRE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B KDM5B peaks 4 2228 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/3fddeac1-d89d-42a7-86c4-527ef6bdd826/ENCFF706LUI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B KDM5B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR227MRE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF706LUI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF649XXC ENCSR278JAH Peak bigBed 5 Middle frontal area 46 tissue female adult 79 years H3K27ac peak 4 2228 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/0e79240b-ebfe-4c04-aa6e-2aa38532b518/ENCFF649XXC.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 79 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278JAH Peak\ track wgEncodeReg4Epigenetics_ENCFF649XXC\ type bigBed 5\ visibility squish\ ChondrocyteReDiffDonor3_CNhs12021_ctss_fwd ChondrocyteReDiffD3+ bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward 0 2229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor3_CNhs12021_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_tpm_fwd ChondrocyteReDiffD3+ bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward 1 2229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChondrocyteReDiffDonor3_CNhs12021_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF457GPL ENCSR227MRE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B KDM5B ENCSR227MRE signal 2 2229 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/e143091b-800b-4c3e-8018-d2c0ff18dcd6/ENCFF457GPL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM5B KDM5B ENCSR227MRE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR227MRE Signal\ track wgEncodeReg4TfChip_ENCFF457GPL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF909JLH ENCSR278JAH Signal bigWig Middle frontal area 46 tissue female adult 79 years H3K27ac signal 2 2229 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/d6e20a36-ee20-49da-95e0-369c194bb014/ENCFF909JLH.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 79 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278JAH Signal\ track wgEncodeReg4Epigenetics_ENCFF909JLH\ type bigWig\ visibility full\ ChondrocyteReDiffDonor3_CNhs12021_ctss_rev ChondrocyteReDiffD3- bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse 0 2230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChondrocyteReDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor3_CNhs12021_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ ChondrocyteReDiffDonor3_CNhs12021_tpm_rev ChondrocyteReDiffD3- bigWig Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse 1 2230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Chondrocyte%20-%20re%20diff%2c%20donor3.CNhs12021.11411-118E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Chondrocyte - re diff, donor3_CNhs12021_11411-118E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11411-118E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChondrocyteReDiffD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChondrocyteReDiffDonor3_CNhs12021_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11411-118E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF879XZR ENCSR227PHM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF501 ZNF501 peaks 4 2230 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/248aa9e2-b153-4d78-a2eb-f3b9d3970e7c/ENCFF879XZR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF501 ZNF501 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR227PHM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF879XZR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF934GTJ ENCSR278JWM Peak bigBed 5 HG03558 ATAC peak 4 2230 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/0bb0baac-94e5-413a-b45d-b81cc6c60cea/ENCFF934GTJ.bigBed\ color 2,199,185\ longLabel HG03558 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278JWM Peak\ track wgEncodeReg4Epigenetics_ENCFF934GTJ\ type bigBed 5\ visibility squish\ ChorionicMembraneCellsDonor1_CNhs12504_ctss_fwd ChorionicMembraneCellsD1+ bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward 0 2231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor1_CNhs12504_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_tpm_fwd ChorionicMembraneCellsD1+ bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward 1 2231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor1_CNhs12504_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF896UJA ENCSR227PHM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF501 ZNF501 ENCSR227PHM signal 2 2231 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/bc733e65-f3b1-4e20-9e13-36dff8c76c3c/ENCFF896UJA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF501 ZNF501 ENCSR227PHM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR227PHM Signal\ track wgEncodeReg4TfChip_ENCFF896UJA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF890LTR ENCSR278JWM Signal bigWig HG03558 ATAC signal 2 2231 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/af4ee50e-c5d7-4e00-9745-340806c79db4/ENCFF890LTR.bigWig\ color 2,199,185\ longLabel HG03558 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278JWM Signal\ track wgEncodeReg4Epigenetics_ENCFF890LTR\ type bigWig\ visibility full\ ChorionicMembraneCellsDonor1_CNhs12504_ctss_rev ChorionicMembraneCellsD1- bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse 0 2232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor1_CNhs12504_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor1_CNhs12504_tpm_rev ChorionicMembraneCellsD1- bigWig chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse 1 2232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor1.CNhs12504.12238-129G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor1_CNhs12504_12238-129G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12238-129G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor1_CNhs12504_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12238-129G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF254RJL ENCSR228ELU Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 peaks 4 2232 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/b2ce9ea9-6c55-4a0e-9936-4bd847c3a71c/ENCFF254RJL.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR228ELU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF254RJL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF403IRO ENCSR278QHR Peak bigBed 5 Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak 4 2232 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9ea7d36b-25bf-43ee-8299-dbe82a00e504/ENCFF403IRO.bigBed\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278QHR Peak\ track wgEncodeReg4Epigenetics_ENCFF403IRO\ type bigBed 5\ visibility squish\ ChorionicMembraneCellsDonor2_CNhs12506_ctss_fwd ChorionicMembraneCellsD2+ bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward 0 2233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor2_CNhs12506_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_tpm_fwd ChorionicMembraneCellsD2+ bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward 1 2233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor2_CNhs12506_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF069LRH ENCSR228ELU Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 ENCSR228ELU signal 2 2233 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/3c004e90-d6ab-41ae-b1b8-0bdf19f26f2f/ENCFF069LRH.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 ENCSR228ELU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR228ELU Signal\ track wgEncodeReg4TfChip_ENCFF069LRH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF926DTJ ENCSR278QHR Signal bigWig Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal 2 2233 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/edbf5840-0d44-499e-9d7d-8b733a7f6f62/ENCFF926DTJ.bigWig\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR278QHR Signal\ track wgEncodeReg4Epigenetics_ENCFF926DTJ\ type bigWig\ visibility full\ ChorionicMembraneCellsDonor2_CNhs12506_ctss_rev ChorionicMembraneCellsD2- bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse 0 2234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor2_CNhs12506_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor2_CNhs12506_tpm_rev ChorionicMembraneCellsD2- bigWig chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse 1 2234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor2.CNhs12506.12239-129G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor2_CNhs12506_12239-129G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12239-129G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor2_CNhs12506_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12239-129G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF370LZV ENCSR228ZYW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6 STAT6 peaks 4 2234 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/68124b1a-8f00-4d42-845a-3bf33d13f22e/ENCFF370LZV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6 STAT6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR228ZYW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF370LZV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF383NCP ENCSR278SKG Peak bigBed 5 Right atrium auricular region tissue female adult 51 years DNase peak 4 2234 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/d2095921-991f-4398-b148-38cb840262be/ENCFF383NCP.bigBed\ color 6,218,147\ labelFields none\ longLabel Right atrium auricular region tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR278SKG Peak\ track wgEncodeReg4Epigenetics_ENCFF383NCP\ type bigBed 5\ visibility squish\ ChorionicMembraneCellsDonor3_CNhs12380_ctss_fwd ChorionicMembraneCellsD3+ bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward 0 2235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor3_CNhs12380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_tpm_fwd ChorionicMembraneCellsD3+ bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward 1 2235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ChorionicMembraneCellsDonor3_CNhs12380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF362LFW ENCSR228ZYW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6 STAT6 ENCSR228ZYW signal 2 2235 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/888dcee9-a53e-46f0-a717-e46d627b06c0/ENCFF362LFW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT6 STAT6 ENCSR228ZYW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR228ZYW Signal\ track wgEncodeReg4TfChip_ENCFF362LFW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF679FKQ ENCSR278SKG Signal bigWig Right atrium auricular region tissue female adult 51 years DNase signal 2 2235 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/87602011-cf51-4de1-8187-0071119eba08/ENCFF679FKQ.bigWig\ color 6,218,147\ longLabel Right atrium auricular region tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR278SKG Signal\ track wgEncodeReg4Epigenetics_ENCFF679FKQ\ type bigWig\ visibility full\ ChorionicMembraneCellsDonor3_CNhs12380_ctss_rev ChorionicMembraneCellsD3- bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse 0 2236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ChorionicMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor3_CNhs12380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ ChorionicMembraneCellsDonor3_CNhs12380_tpm_rev ChorionicMembraneCellsD3- bigWig chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse 1 2236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/chorionic%20membrane%20cells%2c%20donor3.CNhs12380.12240-129G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel chorionic membrane cells, donor3_CNhs12380_12240-129G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12240-129G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ChorionicMembraneCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ChorionicMembraneCellsDonor3_CNhs12380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12240-129G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF752POA ENCSR229DYF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB26 ZBTB26 peaks 4 2236 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/ce4a9c1d-d960-456a-a9af-7027b0675297/ENCFF752POA.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB26 ZBTB26 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR229DYF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF752POA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF443EQH ENCSR279KIX Peak bigBed 5 C4-2B H3K27ac peak 4 2236 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/39ffe7e8-b312-4a7f-9e22-236785c96954/ENCFF443EQH.bigBed\ color 181,145,0\ longLabel C4-2B H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR279KIX Peak\ track wgEncodeReg4Epigenetics_ENCFF443EQH\ type bigBed 5\ visibility squish\ CiliaryEpithelialCellsDonor1_CNhs10871_ctss_fwd CiliaryEpithelialCellsD1+ bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward 0 2237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor1_CNhs10871_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_tpm_fwd CiliaryEpithelialCellsD1+ bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward 1 2237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor1_CNhs10871_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF484QFY ENCSR229DYF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB26 ZBTB26 ENCSR229DYF signal 2 2237 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/e0c07905-9eec-4751-ae96-b49319f4d73d/ENCFF484QFY.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB26 ZBTB26 ENCSR229DYF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR229DYF Signal\ track wgEncodeReg4TfChip_ENCFF484QFY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF226UYQ ENCSR279KIX Signal bigWig C4-2B H3K27ac signal 2 2237 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/22b75e59-0d9b-4d83-b766-2711058e9f05/ENCFF226UYQ.bigWig\ color 181,145,0\ longLabel C4-2B H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR279KIX Signal\ track wgEncodeReg4Epigenetics_ENCFF226UYQ\ type bigWig\ visibility full\ CiliaryEpithelialCellsDonor1_CNhs10871_ctss_rev CiliaryEpithelialCellsD1- bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse 0 2238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor1_CNhs10871_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor1_CNhs10871_tpm_rev CiliaryEpithelialCellsD1- bigWig Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse 1 2238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor1.CNhs10871.11242-116D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor1_CNhs10871_11242-116D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11242-116D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor1_CNhs10871_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11242-116D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF462RCQ ENCSR230ORT Peak bigBed 5 Prostate gland tissue male adult (54 years) CTCF peaks 4 2238 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/799796a2-7b00-4991-ae7f-8bf8deab3fab/ENCFF462RCQ.bigBed\ labelFields none\ longLabel Prostate gland tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230ORT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF462RCQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF551XMX ENCSR279SXQ Peak bigBed 5 Left colon tissue female adult 46 years DNase peak 4 2238 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/77f24677-7121-420b-bf8e-21367984624e/ENCFF551XMX.bigBed\ color 6,218,147\ labelFields none\ longLabel Left colon tissue female adult 46 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR279SXQ Peak\ track wgEncodeReg4Epigenetics_ENCFF551XMX\ type bigBed 5\ visibility squish\ CiliaryEpithelialCellsDonor2_CNhs11966_ctss_fwd CiliaryEpithelialCellsD2+ bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward 0 2239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor2_CNhs11966_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_tpm_fwd CiliaryEpithelialCellsD2+ bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward 1 2239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor2_CNhs11966_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF040LZA ENCSR230ORT Signal bigWig Prostate gland tissue male adult (54 years) CTCF ENCSR230ORT signal 2 2239 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/fa694afc-6944-4b12-a378-d42be8106f0b/ENCFF040LZA.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (54 years) CTCF ENCSR230ORT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230ORT Signal\ track wgEncodeReg4TfChip_ENCFF040LZA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF452PQB ENCSR279SXQ Signal bigWig Left colon tissue female adult 46 years DNase signal 2 2239 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/17d0c0ad-4ce8-4938-bad2-3550e3be27d4/ENCFF452PQB.bigWig\ color 6,218,147\ longLabel Left colon tissue female adult 46 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR279SXQ Signal\ track wgEncodeReg4Epigenetics_ENCFF452PQB\ type bigWig\ visibility full\ CiliaryEpithelialCellsDonor2_CNhs11966_ctss_rev CiliaryEpithelialCellsD2- bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse 0 2240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor2_CNhs11966_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor2_CNhs11966_tpm_rev CiliaryEpithelialCellsD2- bigWig Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse 1 2240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor2.CNhs11966.11323-117D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor2_CNhs11966_11323-117D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11323-117D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor2_CNhs11966_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11323-117D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF290ESQ ENCSR230PTV Peak bigBed 5 K562 ZBTB2 peaks 4 2240 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/5c95a022-a9da-48aa-be44-e1ee8ad1f0b9/ENCFF290ESQ.bigBed\ labelFields none\ longLabel K562 ZBTB2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230PTV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF290ESQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF395RAW ENCSR280DQH Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A H3K4me3 peak 4 2240 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/675652bf-b6b3-4c0c-a8bd-ecb4f8d69ac5/ENCFF395RAW.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR280DQH Peak\ track wgEncodeReg4Epigenetics_ENCFF395RAW\ type bigBed 5\ visibility squish\ CiliaryEpithelialCellsDonor3_CNhs12009_ctss_fwd CiliaryEpithelialCellsD3+ bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward 0 2241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor3_CNhs12009_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_tpm_fwd CiliaryEpithelialCellsD3+ bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward 1 2241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CiliaryEpithelialCellsDonor3_CNhs12009_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF628FPX ENCSR230PTV Signal bigWig K562 ZBTB2 ENCSR230PTV signal 2 2241 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/655a44ec-cf55-477b-8c08-d6e9b0aeddd9/ENCFF628FPX.bigWig\ color 254,75,173\ longLabel K562 ZBTB2 ENCSR230PTV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230PTV Signal\ track wgEncodeReg4TfChip_ENCFF628FPX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF064VUP ENCSR280DQH Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A H3K4me3 signal 2 2241 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/4a847fa5-b93d-45c0-975b-cc5b2c1d47c8/ENCFF064VUP.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR280DQH Signal\ track wgEncodeReg4Epigenetics_ENCFF064VUP\ type bigWig\ visibility full\ CiliaryEpithelialCellsDonor3_CNhs12009_ctss_rev CiliaryEpithelialCellsD3- bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse 0 2242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CiliaryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor3_CNhs12009_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ CiliaryEpithelialCellsDonor3_CNhs12009_tpm_rev CiliaryEpithelialCellsD3- bigWig Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse 1 2242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Ciliary%20Epithelial%20Cells%2c%20donor3.CNhs12009.11399-118D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Ciliary Epithelial Cells, donor3_CNhs12009_11399-118D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11399-118D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CiliaryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CiliaryEpithelialCellsDonor3_CNhs12009_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11399-118D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF230SFD ENCSR230RQK Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 2242 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/96d51e69-ccb0-4101-9c31-626198f97ec3/ENCFF230SFD.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230RQK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF230SFD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF657CBM ENCSR281HBB Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult 49 years DNase peak 4 2242 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/91bf588b-ae5b-4e7d-83e0-24e6ba8c4ef3/ENCFF657CBM.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive male adult 49 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR281HBB Peak\ track wgEncodeReg4Epigenetics_ENCFF657CBM\ type bigBed 5\ visibility squish\ CornealEpithelialCellsDonor1_CNhs11336_ctss_fwd CornealEpithelialCellsD1+ bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward 0 2243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor1_CNhs11336_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_tpm_fwd CornealEpithelialCellsD1+ bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward 1 2243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor1_CNhs11336_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF800TZW ENCSR230RQK Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR230RQK signal 2 2243 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/c963ece2-3f70-4807-b5c6-432d3bb43f8a/ENCFF800TZW.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR230RQK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230RQK Signal\ track wgEncodeReg4TfChip_ENCFF800TZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF857XDF ENCSR281HBB Signal bigWig Common myeloid progenitor, CD34-positive male adult 49 years DNase signal 2 2243 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/52dad15f-55e8-4a80-9395-f622794b9c8c/ENCFF857XDF.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive male adult 49 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR281HBB Signal\ track wgEncodeReg4Epigenetics_ENCFF857XDF\ type bigWig\ visibility full\ CornealEpithelialCellsDonor1_CNhs11336_ctss_rev CornealEpithelialCellsD1- bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse 0 2244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor1_CNhs11336_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor1_CNhs11336_tpm_rev CornealEpithelialCellsD1- bigWig Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse 1 2244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor1.CNhs11336.11526-119I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor1_CNhs11336_11526-119I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11526-119I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor1_CNhs11336_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11526-119I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF522JHE ENCSR230ZWH Peak bigBed 5 Liver tissue female child (4 years) RAD21 peaks 4 2244 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/378ae691-41cb-48b0-9eaa-86a2c92c82bb/ENCFF522JHE.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230ZWH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF522JHE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF248QDG ENCSR281LEY Peak bigBed 5 K562 treated with 10 nM Panobinostat for 48 hours ATAC peak 4 2244 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/7c0940e5-838e-4f60-a5b9-928aa23e8550/ENCFF248QDG.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Panobinostat for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR281LEY Peak\ track wgEncodeReg4Epigenetics_ENCFF248QDG\ type bigBed 5\ visibility squish\ CornealEpithelialCellsDonor2_CNhs12094_ctss_fwd CornealEpithelialCellsD2+ bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward 0 2245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor2_CNhs12094_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor2_CNhs12094_tpm_fwd CornealEpithelialCellsD2+ bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward 1 2245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor2_CNhs12094_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF088OAW ENCSR230ZWH Signal bigWig Liver tissue female child (4 years) RAD21 ENCSR230ZWH signal 2 2245 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/e4b48da1-a0b3-413f-bf9e-a2602439f802/ENCFF088OAW.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) RAD21 ENCSR230ZWH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR230ZWH Signal\ track wgEncodeReg4TfChip_ENCFF088OAW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF319BIE ENCSR281LEY Signal bigWig K562 treated with 10 nM Panobinostat for 48 hours ATAC signal 2 2245 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/e9b03bfd-c26e-4544-8720-5907784459e1/ENCFF319BIE.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Panobinostat for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR281LEY Signal\ track wgEncodeReg4Epigenetics_ENCFF319BIE\ type bigWig\ visibility full\ CornealEpithelialCellsDonor2_CNhs12094_ctss_rev CornealEpithelialCellsD2- bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse 0 2246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor2_CNhs12094_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor2_CNhs12094_tpm_rev CornealEpithelialCellsD2- bigWig Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse 1 2246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor2.CNhs12094.11606-120I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor2_CNhs12094_11606-120I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11606-120I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor2_CNhs12094_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11606-120I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF561ZSB ENCSR231PDA Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF319 ZNF319 peaks 4 2246 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/6747b9ae-893e-489c-9f56-4ce48c029074/ENCFF561ZSB.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF319 ZNF319 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR231PDA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF561ZSB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF509PZC ENCSR282QFE Peak bigBed 5 Stomach tissue female embryo 121 days DNase peak 4 2246 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/107ae4b4-d2c6-4dbd-8c5f-89233279cec1/ENCFF509PZC.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo 121 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR282QFE Peak\ track wgEncodeReg4Epigenetics_ENCFF509PZC\ type bigBed 5\ visibility squish\ CornealEpithelialCellsDonor3_CNhs12123_ctss_fwd CornealEpithelialCellsD3+ bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward 0 2247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor3_CNhs12123_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor3_CNhs12123_tpm_fwd CornealEpithelialCellsD3+ bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward 1 2247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track CornealEpithelialCellsDonor3_CNhs12123_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF553LQP ENCSR231PDA Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF319 ZNF319 ENCSR231PDA signal 2 2247 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/13e6c30a-3742-4a49-ae99-c51f0c10271f/ENCFF553LQP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF319 ZNF319 ENCSR231PDA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR231PDA Signal\ track wgEncodeReg4TfChip_ENCFF553LQP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF358UVV ENCSR282QFE Signal bigWig Stomach tissue female embryo 121 days DNase signal 2 2247 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/42a55fea-e637-416b-9fe3-133982d84e95/ENCFF358UVV.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 121 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR282QFE Signal\ track wgEncodeReg4Epigenetics_ENCFF358UVV\ type bigWig\ visibility full\ CornealEpithelialCellsDonor3_CNhs12123_ctss_rev CornealEpithelialCellsD3- bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse 0 2248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CornealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor3_CNhs12123_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ CornealEpithelialCellsDonor3_CNhs12123_tpm_rev CornealEpithelialCellsD3- bigWig Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse 1 2248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Corneal%20Epithelial%20Cells%2c%20donor3.CNhs12123.11687-122I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Corneal Epithelial Cells, donor3_CNhs12123_11687-122I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11687-122I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CornealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track CornealEpithelialCellsDonor3_CNhs12123_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11687-122I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF622BUU ENCSR231YFE Peak bigBed 5 MCF-7 ZBTB33 peaks 4 2248 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/6544b1ea-a552-4b2c-9fb8-14d2b1cbec2f/ENCFF622BUU.bigBed\ labelFields none\ longLabel MCF-7 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR231YFE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF622BUU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF347OAU ENCSR283LPH Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years ATAC peak 4 2248 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/03/4f0725e9-f494-4f7e-9d26-025fd09b0646/ENCFF347OAU.bigBed\ color 2,199,185\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283LPH Peak\ track wgEncodeReg4Epigenetics_ENCFF347OAU\ type bigBed 5\ visibility squish\ DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_ctss_fwd DendriticCellsMonocyteImmatureD1Tr1+ bigWig Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_forward 0 2249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor1%2c%20tech_rep1.CNhs10855.11227-116C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11227-116C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_tpm_fwd DendriticCellsMonocyteImmatureD1Tr1+ bigWig Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_forward 1 2249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor1%2c%20tech_rep1.CNhs10855.11227-116C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11227-116C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF528IZW ENCSR231YFE Signal bigWig MCF-7 ZBTB33 ENCSR231YFE signal 2 2249 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/e0572196-9c11-4e5b-972d-0a8bef2bc14d/ENCFF528IZW.bigWig\ color 65,171,173\ longLabel MCF-7 ZBTB33 ENCSR231YFE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR231YFE Signal\ track wgEncodeReg4TfChip_ENCFF528IZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF995WDO ENCSR283LPH Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years ATAC signal 2 2249 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/03/d8a5b660-64ea-4e6a-970e-cd68a0c6aac9/ENCFF995WDO.bigWig\ color 2,199,185\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283LPH Signal\ track wgEncodeReg4Epigenetics_ENCFF995WDO\ type bigWig\ visibility full\ DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_ctss_rev DendriticCellsMonocyteImmatureD1Tr1- bigWig Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_reverse 0 2250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor1%2c%20tech_rep1.CNhs10855.11227-116C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11227-116C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_tpm_rev DendriticCellsMonocyteImmatureD1Tr1- bigWig Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_reverse 1 2250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor1%2c%20tech_rep1.CNhs10855.11227-116C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor1, tech_rep1_CNhs10855_11227-116C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11227-116C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor1TechRep1_CNhs10855_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11227-116C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF781VSC ENCSR231ZVN Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 peaks 4 2250 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/2684a281-363f-48aa-81b6-569cfb92ff96/ENCFF781VSC.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR231ZVN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF781VSC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF623XDV ENCSR283MZJ Peak bigBed 5 T-cell female adult 33 years DNase peak 4 2250 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/f13d541d-bf0d-4c90-92cd-65858d267833/ENCFF623XDV.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 33 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283MZJ Peak\ track wgEncodeReg4Epigenetics_ENCFF623XDV\ type bigBed 5\ visibility squish\ DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_ctss_fwd DendriticCellsMonocyteImmatureD3+ bigWig Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_forward 0 2251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor3.CNhs12000.11384-118B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11384-118B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_tpm_fwd DendriticCellsMonocyteImmatureD3+ bigWig Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_forward 1 2251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor3.CNhs12000.11384-118B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11384-118B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF094SFJ ENCSR231ZVN Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 ENCSR231ZVN signal 2 2251 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/7ed62d1f-ab6d-44c1-9d57-0c552e67d869/ENCFF094SFJ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 ENCSR231ZVN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR231ZVN Signal\ track wgEncodeReg4TfChip_ENCFF094SFJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF635ZUA ENCSR283MZJ Signal bigWig T-cell female adult 33 years DNase signal 2 2251 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/b3d28dab-58d3-4577-ac18-38c0bf1b4add/ENCFF635ZUA.bigWig\ color 6,218,147\ longLabel T-cell female adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283MZJ Signal\ track wgEncodeReg4Epigenetics_ENCFF635ZUA\ type bigWig\ visibility full\ DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_ctss_rev DendriticCellsMonocyteImmatureD3- bigWig Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_reverse 0 2252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor3.CNhs12000.11384-118B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11384-118B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsMonocyteImmatureD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7\ urlLabel FANTOM5 Details:\ DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_tpm_rev DendriticCellsMonocyteImmatureD3- bigWig Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_reverse 1 2252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20monocyte%20immature%20derived%2c%20donor3.CNhs12000.11384-118B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - monocyte immature derived, donor3_CNhs12000_11384-118B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11384-118B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsMonocyteImmatureD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track DendriticCellsMonocyteImmatureDerivedDonor3_CNhs12000_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11384-118B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF153JWK ENCSR232AAR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42 ZBTB42 peaks 4 2252 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ffcd9dca-675e-45f4-b5ec-c116ace95e9f/ENCFF153JWK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42 ZBTB42 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR232AAR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF153JWK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF798PTC ENCSR283SJF Peak bigBed 5 Nephron organoid female embryo 5 days, 35 days post differentiation H3K27ac peak 4 2252 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/27/c540b3eb-9146-436e-8173-432af34510a6/ENCFF798PTC.bigBed\ color 181,145,0\ longLabel Nephron organoid female embryo 5 days, 35 days post differentiation H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283SJF Peak\ track wgEncodeReg4Epigenetics_ENCFF798PTC\ type bigBed 5\ visibility squish\ DendriticCellsPlasmacytoidDonor1_CNhs10857_ctss_fwd DendriticCellsPlasmacytoidD1+ bigWig Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_forward 0 2253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor1.CNhs10857.11228-116C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11228-116C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor1_CNhs10857_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor1_CNhs10857_tpm_fwd DendriticCellsPlasmacytoidD1+ bigWig Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_forward 1 2253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor1.CNhs10857.11228-116C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11228-116C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track DendriticCellsPlasmacytoidDonor1_CNhs10857_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF738RLM ENCSR232AAR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42 ZBTB42 ENCSR232AAR signal 2 2253 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/033f938a-2d6d-4d2d-a7ae-2b031656cf89/ENCFF738RLM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB42 ZBTB42 ENCSR232AAR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR232AAR Signal\ track wgEncodeReg4TfChip_ENCFF738RLM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF099ERT ENCSR283SJF Signal bigWig Nephron organoid female embryo 5 days, 35 days post differentiation H3K27ac signal 2 2253 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/e07de37e-5193-4012-bd3d-e57355c8a03f/ENCFF099ERT.bigWig\ color 181,145,0\ longLabel Nephron organoid female embryo 5 days, 35 days post differentiation H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283SJF Signal\ track wgEncodeReg4Epigenetics_ENCFF099ERT\ type bigWig\ visibility full\ DendriticCellsPlasmacytoidDonor1_CNhs10857_ctss_rev DendriticCellsPlasmacytoidD1- bigWig Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_reverse 0 2254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor1.CNhs10857.11228-116C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11228-116C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DendriticCellsPlasmacytoidD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor1_CNhs10857_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4\ urlLabel FANTOM5 Details:\ DendriticCellsPlasmacytoidDonor1_CNhs10857_tpm_rev DendriticCellsPlasmacytoidD1- bigWig Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_reverse 1 2254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Dendritic%20Cells%20-%20plasmacytoid%2c%20donor1.CNhs10857.11228-116C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Dendritic Cells - plasmacytoid, donor1_CNhs10857_11228-116C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11228-116C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DendriticCellsPlasmacytoidD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track DendriticCellsPlasmacytoidDonor1_CNhs10857_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11228-116C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF462ULY ENCSR232LLP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4 FOXP4 peaks 4 2254 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/f27d566f-6b67-4cfb-92ed-37361bcf88a0/ENCFF462ULY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4 FOXP4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR232LLP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF462ULY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF534BNE ENCSR283TME Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase peak 4 2254 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/b41da8aa-c1b3-4f61-ad49-4b5669eb1297/ENCFF534BNE.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283TME Peak\ track wgEncodeReg4Epigenetics_ENCFF534BNE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF297RQV ENCSR232LLP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4 FOXP4 ENCSR232LLP signal 2 2255 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/61a30e3d-1d01-422c-8f08-84aadd1681a4/ENCFF297RQV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP4 FOXP4 ENCSR232LLP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR232LLP Signal\ track wgEncodeReg4TfChip_ENCFF297RQV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF864EOB ENCSR283TME Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase signal 2 2255 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/37aba6d7-1c52-44c1-a9bf-95a3ab53f95b/ENCFF864EOB.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR283TME Signal\ track wgEncodeReg4Epigenetics_ENCFF864EOB\ type bigWig\ visibility full\ EndothelialCellsAorticDonor0_CNhs10837_ctss_fwd EndothelialCellsAorticD0+ bigWig Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_forward 0 2255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor0.CNhs10837.11207-116A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11207-116A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor0_CNhs10837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor0_CNhs10837_tpm_fwd EndothelialCellsAorticD0+ bigWig Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_forward 1 2255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor0.CNhs10837.11207-116A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11207-116A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor0_CNhs10837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF037FCW ENCSR232OFD Peak bigBed 5 Right atrium auricular region tissue female adult (51 years) CTCF peaks 4 2256 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/07/24/2a8cfbab-e921-4caf-a2e8-317beeb9d1b6/ENCFF037FCW.bigBed\ labelFields none\ longLabel Right atrium auricular region tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR232OFD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF037FCW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF141HUS ENCSR284GAG Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase peak 4 2256 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/8a7d7da9-4bcb-4d59-82be-48219b2867ad/ENCFF141HUS.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR284GAG Peak\ track wgEncodeReg4Epigenetics_ENCFF141HUS\ type bigBed 5\ visibility squish\ EndothelialCellsAorticDonor0_CNhs10837_ctss_rev EndothelialCellsAorticD0- bigWig Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_reverse 0 2256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor0.CNhs10837.11207-116A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11207-116A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor0_CNhs10837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor0_CNhs10837_tpm_rev EndothelialCellsAorticD0- bigWig Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_reverse 1 2256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor0.CNhs10837.11207-116A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor0_CNhs10837_11207-116A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11207-116A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor0_CNhs10837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11207-116A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF872ERK ENCSR232OFD Signal bigWig Right atrium auricular region tissue female adult (51 years) CTCF ENCSR232OFD signal 2 2257 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/8a560cb5-86e5-4e8a-8d5b-dff74b43b5c7/ENCFF872ERK.bigWig\ color 116,50,165\ longLabel Right atrium auricular region tissue female adult (51 years) CTCF ENCSR232OFD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR232OFD Signal\ track wgEncodeReg4TfChip_ENCFF872ERK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF378RZS ENCSR284GAG Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase signal 2 2257 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/31237bb3-4b67-40bb-b73d-484f38af33cc/ENCFF378RZS.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR284GAG Signal\ track wgEncodeReg4Epigenetics_ENCFF378RZS\ type bigWig\ visibility full\ EndothelialCellsAorticDonor1_CNhs12495_ctss_fwd EndothelialCellsAorticD1+ bigWig Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_forward 0 2257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor1.CNhs12495.11263-116G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11263-116G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor1_CNhs12495_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor1_CNhs12495_tpm_fwd EndothelialCellsAorticD1+ bigWig Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_forward 1 2257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor1.CNhs12495.11263-116G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11263-116G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor1_CNhs12495_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF174WDB ENCSR233FAG Peak bigBed 5 HEK293T PKNOX1 peaks 4 2258 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/84704111-5ee7-4520-9ef2-100e4b0f8a63/ENCFF174WDB.bigBed\ labelFields none\ longLabel HEK293T PKNOX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR233FAG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF174WDB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF348OBX ENCSR284VNJ Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase peak 4 2258 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/67582673-48d2-476d-af97-d66c434068dd/ENCFF348OBX.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR284VNJ Peak\ track wgEncodeReg4Epigenetics_ENCFF348OBX\ type bigBed 5\ visibility squish\ EndothelialCellsAorticDonor1_CNhs12495_ctss_rev EndothelialCellsAorticD1- bigWig Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_reverse 0 2258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor1.CNhs12495.11263-116G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11263-116G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor1_CNhs12495_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor1_CNhs12495_tpm_rev EndothelialCellsAorticD1- bigWig Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_reverse 1 2258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor1.CNhs12495.11263-116G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor1_CNhs12495_11263-116G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11263-116G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor1_CNhs12495_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11263-116G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF824QYA ENCSR233FAG Signal bigWig HEK293T PKNOX1 ENCSR233FAG signal 2 2259 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/8f3cc062-f60f-40c6-a130-92533dd5c2f1/ENCFF824QYA.bigWig\ color 92,161,153\ longLabel HEK293T PKNOX1 ENCSR233FAG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR233FAG Signal\ track wgEncodeReg4TfChip_ENCFF824QYA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF685XGL ENCSR284VNJ Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase signal 2 2259 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/be9179d8-a2a9-42b0-a259-d3945e906804/ENCFF685XGL.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR284VNJ Signal\ track wgEncodeReg4Epigenetics_ENCFF685XGL\ type bigWig\ visibility full\ EndothelialCellsAorticDonor2_CNhs11375_ctss_fwd EndothelialCellsAorticD2+ bigWig Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_forward 0 2259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor2.CNhs11375.11340-117F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11340-117F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor2_CNhs11375_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor2_CNhs11375_tpm_fwd EndothelialCellsAorticD2+ bigWig Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_forward 1 2259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor2.CNhs11375.11340-117F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11340-117F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor2_CNhs11375_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF203BIA ENCSR233FJO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280D ZNF280D peaks 4 2260 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/b8075c35-7731-4445-9b50-178b3290e4d3/ENCFF203BIA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280D ZNF280D peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR233FJO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF203BIA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF239LME ENCSR286STX Peak bigBed 5 Heart left ventricle tissue male adult 66 years ATAC peak 4 2260 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/8d5bf62d-4073-4788-a364-06a1e1eef3d7/ENCFF239LME.bigBed\ color 2,199,185\ longLabel Heart left ventricle tissue male adult 66 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR286STX Peak\ track wgEncodeReg4Epigenetics_ENCFF239LME\ type bigBed 5\ visibility squish\ EndothelialCellsAorticDonor2_CNhs11375_ctss_rev EndothelialCellsAorticD2- bigWig Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse 0 2260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor2.CNhs11375.11340-117F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11340-117F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor2_CNhs11375_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor2_CNhs11375_tpm_rev EndothelialCellsAorticD2- bigWig Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse 1 2260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor2.CNhs11375.11340-117F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor2_CNhs11375_11340-117F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11340-117F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor2_CNhs11375_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11340-117F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF704GHZ ENCSR233FJO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280D ZNF280D ENCSR233FJO signal 2 2261 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/e4946c31-ae87-47c2-9a8d-acd9d42214f6/ENCFF704GHZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280D ZNF280D ENCSR233FJO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR233FJO Signal\ track wgEncodeReg4TfChip_ENCFF704GHZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF169GLM ENCSR286STX Signal bigWig Heart left ventricle tissue male adult 66 years ATAC signal 2 2261 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/ce360648-b0e0-47c9-a907-12235a82b97d/ENCFF169GLM.bigWig\ color 2,199,185\ longLabel Heart left ventricle tissue male adult 66 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR286STX Signal\ track wgEncodeReg4Epigenetics_ENCFF169GLM\ type bigWig\ visibility full\ EndothelialCellsAorticDonor3_CNhs12022_ctss_fwd EndothelialCellsAorticD3+ bigWig Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_forward 0 2261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor3.CNhs12022.11412-118E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11412-118E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor3_CNhs12022_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor3_CNhs12022_tpm_fwd EndothelialCellsAorticD3+ bigWig Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_forward 1 2261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor3.CNhs12022.11412-118E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11412-118E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsAorticDonor3_CNhs12022_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF282UAO ENCSR234HEM Peak bigBed 5 Spleen tissue male adult (37 years) CTCF peaks 4 2262 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/cd0fcef9-f3ca-4d3d-99fb-903089dce079/ENCFF282UAO.bigBed\ labelFields none\ longLabel Spleen tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR234HEM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF282UAO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF895QPR ENCSR286WIA Signal bigWig Muscle of leg tissue female embryo 105 days DNase signal 2 2262 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ee80550b-e0da-420b-97d0-03ea45d61502/ENCFF895QPR.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR286WIA Signal\ track wgEncodeReg4Epigenetics_ENCFF895QPR\ type bigWig\ visibility full\ EndothelialCellsAorticDonor3_CNhs12022_ctss_rev EndothelialCellsAorticD3- bigWig Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_reverse 0 2262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor3.CNhs12022.11412-118E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11412-118E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsAorticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor3_CNhs12022_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8\ urlLabel FANTOM5 Details:\ EndothelialCellsAorticDonor3_CNhs12022_tpm_rev EndothelialCellsAorticD3- bigWig Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_reverse 1 2262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Aortic%2c%20donor3.CNhs12022.11412-118E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Aortic, donor3_CNhs12022_11412-118E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11412-118E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsAorticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsAorticDonor3_CNhs12022_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11412-118E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF705PKJ ENCSR234HEM Signal bigWig Spleen tissue male adult (37 years) CTCF ENCSR234HEM signal 2 2263 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/623914b7-11eb-4111-841d-6b64255c9b34/ENCFF705PKJ.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (37 years) CTCF ENCSR234HEM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR234HEM Signal\ track wgEncodeReg4TfChip_ENCFF705PKJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF805CQG ENCSR287GYT Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours DNase peak 4 2263 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/a5b409e1-3c01-46a1-b1fa-6063140cb27e/ENCFF805CQG.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR287GYT Peak\ track wgEncodeReg4Epigenetics_ENCFF805CQG\ type bigBed 5\ visibility squish\ EndothelialCellsArteryDonor1_CNhs12496_ctss_fwd EndothelialCellsArteryD1+ bigWig Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_forward 0 2263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor1.CNhs12496.11264-116G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11264-116G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsArteryDonor1_CNhs12496_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor1_CNhs12496_tpm_fwd EndothelialCellsArteryD1+ bigWig Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_forward 1 2263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor1.CNhs12496.11264-116G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11264-116G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsArteryDonor1_CNhs12496_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF712EXQ ENCSR234VCE Peak bigBed 5 MCF-7 DPF2 peaks 4 2264 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/214d99eb-13ef-49dc-a938-496f167aad56/ENCFF712EXQ.bigBed\ labelFields none\ longLabel MCF-7 DPF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR234VCE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF712EXQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF860DNN ENCSR287GYT Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours DNase signal 2 2264 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/dd241b1f-1a5e-4cf7-a9f2-4aa92e0ca124/ENCFF860DNN.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL TNF-alpha for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR287GYT Signal\ track wgEncodeReg4Epigenetics_ENCFF860DNN\ type bigWig\ visibility full\ EndothelialCellsArteryDonor1_CNhs12496_ctss_rev EndothelialCellsArteryD1- bigWig Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_reverse 0 2264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor1.CNhs12496.11264-116G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11264-116G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsArteryDonor1_CNhs12496_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor1_CNhs12496_tpm_rev EndothelialCellsArteryD1- bigWig Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_reverse 1 2264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor1.CNhs12496.11264-116G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Artery, donor1_CNhs12496_11264-116G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11264-116G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsArteryDonor1_CNhs12496_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11264-116G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF533KYL ENCSR234VCE Signal bigWig MCF-7 DPF2 ENCSR234VCE signal 2 2265 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/cd74bfb7-c984-4555-8aa5-542d28cc3392/ENCFF533KYL.bigWig\ color 65,171,173\ longLabel MCF-7 DPF2 ENCSR234VCE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR234VCE Signal\ track wgEncodeReg4TfChip_ENCFF533KYL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF781WIJ ENCSR287XHR Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 2265 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/a73d4386-7388-49e8-a71d-10b22febf031/ENCFF781WIJ.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR287XHR Peak\ track wgEncodeReg4Epigenetics_ENCFF781WIJ\ type bigBed 5\ visibility squish\ EndothelialCellsArteryDonor2_CNhs11977_ctss_fwd EndothelialCellsArteryD2+ bigWig Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_forward 0 2265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor2.CNhs11977.11341-117F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11341-117F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsArteryDonor2_CNhs11977_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor2_CNhs11977_tpm_fwd EndothelialCellsArteryD2+ bigWig Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_forward 1 2265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor2.CNhs11977.11341-117F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11341-117F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsArteryDonor2_CNhs11977_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF216AUS ENCSR235OVI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKBIZ NFKBIZ peaks 4 2266 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/d636f48b-e662-402d-a2e1-3fa2e25242d4/ENCFF216AUS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKBIZ NFKBIZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR235OVI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF216AUS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF209JIH ENCSR287XHR Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal 2 2266 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/d022183d-4b88-4d1e-ad75-c4e4d06cc4ae/ENCFF209JIH.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR287XHR Signal\ track wgEncodeReg4Epigenetics_ENCFF209JIH\ type bigWig\ visibility full\ EndothelialCellsArteryDonor2_CNhs11977_ctss_rev EndothelialCellsArteryD2- bigWig Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_reverse 0 2266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor2.CNhs11977.11341-117F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11341-117F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsArteryDonor2_CNhs11977_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor2_CNhs11977_tpm_rev EndothelialCellsArteryD2- bigWig Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_reverse 1 2266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor2.CNhs11977.11341-117F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Artery, donor2_CNhs11977_11341-117F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11341-117F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsArteryDonor2_CNhs11977_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11341-117F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF591VTT ENCSR235OVI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKBIZ NFKBIZ ENCSR235OVI signal 2 2267 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/af8f1c54-8116-4c09-9d0a-28bdf22d8ed9/ENCFF591VTT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFKBIZ NFKBIZ ENCSR235OVI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR235OVI Signal\ track wgEncodeReg4TfChip_ENCFF591VTT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF936YSV ENCSR287YDU Peak bigBed 5 Myoepithelial cell of mammary gland female adult 36 years H3K4me3 peak 4 2267 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c9f038fd-322f-4f37-b90f-e512baa8f37e/ENCFF936YSV.bigBed\ color 255,0,0\ longLabel Myoepithelial cell of mammary gland female adult 36 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR287YDU Peak\ track wgEncodeReg4Epigenetics_ENCFF936YSV\ type bigBed 5\ visibility squish\ EndothelialCellsArteryDonor3_CNhs12023_ctss_fwd EndothelialCellsArteryD3+ bigWig Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_forward 0 2267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor3.CNhs12023.11413-118E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11413-118E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsArteryDonor3_CNhs12023_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor3_CNhs12023_tpm_fwd EndothelialCellsArteryD3+ bigWig Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_forward 1 2267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor3.CNhs12023.11413-118E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11413-118E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsArteryDonor3_CNhs12023_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF693FMG ENCSR235PYI Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41 ZNF41 peaks 4 2268 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/852a59b6-50f4-46c9-a2b4-cff80975fd0b/ENCFF693FMG.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41 ZNF41 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR235PYI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF693FMG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF609VLF ENCSR287YDU Signal bigWig Myoepithelial cell of mammary gland female adult 36 years H3K4me3 signal 2 2268 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e2cc8302-b9c2-44dc-b2bd-c1b2b104b306/ENCFF609VLF.bigWig\ color 255,0,0\ longLabel Myoepithelial cell of mammary gland female adult 36 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR287YDU Signal\ track wgEncodeReg4Epigenetics_ENCFF609VLF\ type bigWig\ visibility full\ EndothelialCellsArteryDonor3_CNhs12023_ctss_rev EndothelialCellsArteryD3- bigWig Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_reverse 0 2268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor3.CNhs12023.11413-118E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11413-118E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsArteryDonor3_CNhs12023_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9\ urlLabel FANTOM5 Details:\ EndothelialCellsArteryDonor3_CNhs12023_tpm_rev EndothelialCellsArteryD3- bigWig Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_reverse 1 2268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Artery%2c%20donor3.CNhs12023.11413-118E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Artery, donor3_CNhs12023_11413-118E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11413-118E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsArteryDonor3_CNhs12023_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11413-118E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF568GYV ENCSR235PYI Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41 ZNF41 ENCSR235PYI signal 2 2269 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/ab79e4c4-7674-4046-bb59-a2fe78502406/ENCFF568GYV.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF41 ZNF41 ENCSR235PYI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR235PYI Signal\ track wgEncodeReg4TfChip_ENCFF568GYV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF803ZDH ENCSR290NGL Peak bigBed 5 T-cell female adult 32 years DNase peak 4 2269 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/f8417981-638c-4ef7-9240-a3bcccfdc84f/ENCFF803ZDH.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 32 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR290NGL Peak\ track wgEncodeReg4Epigenetics_ENCFF803ZDH\ type bigBed 5\ visibility squish\ EndothelialCellsLymphaticDonor1_CNhs10865_ctss_fwd EndothelialCellsLymphaticD1+ bigWig Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_forward 0 2269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor1.CNhs10865.11236-116D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11236-116D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor1_CNhs10865_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor1_CNhs10865_tpm_fwd EndothelialCellsLymphaticD1+ bigWig Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_forward 1 2269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor1.CNhs10865.11236-116D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11236-116D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor1_CNhs10865_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF454PBI ENCSR236YGF Peak bigBed 5 Transverse colon tissue female adult (53 years) CTCF peaks 4 2270 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/bb73e04c-4b39-493f-9bf5-ad2d16e44c17/ENCFF454PBI.bigBed\ labelFields none\ longLabel Transverse colon tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR236YGF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF454PBI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF888RPS ENCSR290NGL Signal bigWig T-cell female adult 32 years DNase signal 2 2270 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1ff67aaf-379e-4fdc-98db-5cadf2bd0b80/ENCFF888RPS.bigWig\ color 6,218,147\ longLabel T-cell female adult 32 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR290NGL Signal\ track wgEncodeReg4Epigenetics_ENCFF888RPS\ type bigWig\ visibility full\ EndothelialCellsLymphaticDonor1_CNhs10865_ctss_rev EndothelialCellsLymphaticD1- bigWig Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_reverse 0 2270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor1.CNhs10865.11236-116D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11236-116D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor1_CNhs10865_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor1_CNhs10865_tpm_rev EndothelialCellsLymphaticD1- bigWig Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_reverse 1 2270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor1.CNhs10865.11236-116D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor1_CNhs10865_11236-116D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11236-116D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor1_CNhs10865_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11236-116D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF686TFX ENCSR236YGF Signal bigWig Transverse colon tissue female adult (53 years) CTCF ENCSR236YGF signal 2 2271 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e328d2c5-7113-4473-8940-05e3d41ded16/ENCFF686TFX.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (53 years) CTCF ENCSR236YGF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR236YGF Signal\ track wgEncodeReg4TfChip_ENCFF686TFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF533QGD ENCSR291KBJ Peak bigBed 5 Effector memory CD4-positive, alpha-beta T cell H3K4me3 peak 4 2271 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e12ef860-b6d6-4324-b8cf-acf696226c1b/ENCFF533QGD.bigBed\ color 255,0,0\ longLabel Effector memory CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR291KBJ Peak\ track wgEncodeReg4Epigenetics_ENCFF533QGD\ type bigBed 5\ visibility squish\ EndothelialCellsLymphaticDonor2_CNhs11901_ctss_fwd EndothelialCellsLymphaticD2+ bigWig Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_forward 0 2271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor2.CNhs11901.11317-117D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11317-117D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor2_CNhs11901_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor2_CNhs11901_tpm_fwd EndothelialCellsLymphaticD2+ bigWig Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_forward 1 2271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor2.CNhs11901.11317-117D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11317-117D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor2_CNhs11901_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF677SUG ENCSR237BTA Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (81 years) CTCF peaks 4 2272 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/d9b30310-c1ee-4185-a192-e9b399b1fe2c/ENCFF677SUG.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (81 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR237BTA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF677SUG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF032HUK ENCSR291KBJ Signal bigWig Effector memory CD4-positive, alpha-beta T cell H3K4me3 signal 2 2272 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2fab187e-4f8d-4351-8066-b17cc84759f3/ENCFF032HUK.bigWig\ color 255,0,0\ longLabel Effector memory CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR291KBJ Signal\ track wgEncodeReg4Epigenetics_ENCFF032HUK\ type bigWig\ visibility full\ EndothelialCellsLymphaticDonor2_CNhs11901_ctss_rev EndothelialCellsLymphaticD2- bigWig Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse 0 2272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor2.CNhs11901.11317-117D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11317-117D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor2_CNhs11901_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor2_CNhs11901_tpm_rev EndothelialCellsLymphaticD2- bigWig Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse 1 2272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor2.CNhs11901.11317-117D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor2_CNhs11901_11317-117D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11317-117D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor2_CNhs11901_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11317-117D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF796CNP ENCSR237BTA Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (81 years) CTCF ENCSR237BTA signal 2 2273 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/875ffca6-d0fb-4173-858d-17477a028639/ENCFF796CNP.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (81 years) CTCF ENCSR237BTA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR237BTA Signal\ track wgEncodeReg4TfChip_ENCFF796CNP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF599DDZ ENCSR291PVS Peak bigBed 5 Squamous cell carcinoma skin epidermis tissue male adult 78 years H3K4me3 peak 4 2273 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/8470a9e5-d0bf-40ad-b9bb-5b3e72359dcc/ENCFF599DDZ.bigBed\ color 255,0,0\ longLabel Squamous cell carcinoma skin epidermis tissue male adult 78 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR291PVS Peak\ track wgEncodeReg4Epigenetics_ENCFF599DDZ\ type bigBed 5\ visibility squish\ EndothelialCellsLymphaticDonor3_CNhs11906_ctss_fwd EndothelialCellsLymphaticD3+ bigWig Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward 0 2273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor3.CNhs11906.11393-118C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11393-118C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor3_CNhs11906_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor3_CNhs11906_tpm_fwd EndothelialCellsLymphaticD3+ bigWig Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward 1 2273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor3.CNhs11906.11393-118C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11393-118C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsLymphaticDonor3_CNhs11906_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF003PDY ENCSR237TFX Peak bigBed 5 HEK293T CTBP1 peaks 4 2274 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/1f8c77dc-5200-446c-b495-e9b57093ea73/ENCFF003PDY.bigBed\ labelFields none\ longLabel HEK293T CTBP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR237TFX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF003PDY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF670CVB ENCSR291PVS Signal bigWig Squamous cell carcinoma skin epidermis tissue male adult 78 years H3K4me3 signal 2 2274 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/c13d1c36-a0bb-405d-ace0-b7e2076fc1b1/ENCFF670CVB.bigWig\ color 255,0,0\ longLabel Squamous cell carcinoma skin epidermis tissue male adult 78 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR291PVS Signal\ track wgEncodeReg4Epigenetics_ENCFF670CVB\ type bigWig\ visibility full\ EndothelialCellsLymphaticDonor3_CNhs11906_ctss_rev EndothelialCellsLymphaticD3- bigWig Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_reverse 0 2274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor3.CNhs11906.11393-118C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11393-118C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor3_CNhs11906_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7\ urlLabel FANTOM5 Details:\ EndothelialCellsLymphaticDonor3_CNhs11906_tpm_rev EndothelialCellsLymphaticD3- bigWig Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_reverse 1 2274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Lymphatic%2c%20donor3.CNhs11906.11393-118C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Lymphatic, donor3_CNhs11906_11393-118C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11393-118C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsLymphaticDonor3_CNhs11906_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11393-118C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF678YHO ENCSR237TFX Signal bigWig HEK293T CTBP1 ENCSR237TFX signal 2 2275 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e50646ba-5d8d-4b02-b715-6bddf14bc885/ENCFF678YHO.bigWig\ color 92,161,153\ longLabel HEK293T CTBP1 ENCSR237TFX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR237TFX Signal\ track wgEncodeReg4TfChip_ENCFF678YHO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF910FPB ENCSR291QUA Peak bigBed 5 MCF 10A H3K4me3 peak 4 2275 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/9789db4e-decf-4c43-ae33-2d7779de7892/ENCFF910FPB.bigBed\ color 255,0,0\ longLabel MCF 10A H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR291QUA Peak\ track wgEncodeReg4Epigenetics_ENCFF910FPB\ type bigBed 5\ visibility squish\ EndothelialCellsMicrovascularDonor1_CNhs11925_ctss_fwd EndothelialCellsMicrovascularD1+ bigWig Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_forward 0 2275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor1.CNhs11925.11265-116G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11265-116G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsMicrovascularD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsMicrovascularDonor1_CNhs11925_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5\ urlLabel FANTOM5 Details:\ EndothelialCellsMicrovascularDonor1_CNhs11925_tpm_fwd EndothelialCellsMicrovascularD1+ bigWig Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_forward 1 2275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor1.CNhs11925.11265-116G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11265-116G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsMicrovascularD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsMicrovascularDonor1_CNhs11925_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF521DSV ENCSR237VLT Peak bigBed 5 K562 ZBTB40 peaks 4 2276 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/46196482-947b-4a49-b5b3-eb981db94a84/ENCFF521DSV.bigBed\ labelFields none\ longLabel K562 ZBTB40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR237VLT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF521DSV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF121TKD ENCSR291QUA Signal bigWig MCF 10A H3K4me3 signal 2 2276 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/45576e58-7bb8-429d-8fc9-dd9f96116134/ENCFF121TKD.bigWig\ color 255,0,0\ longLabel MCF 10A H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR291QUA Signal\ track wgEncodeReg4Epigenetics_ENCFF121TKD\ type bigWig\ visibility full\ EndothelialCellsMicrovascularDonor1_CNhs11925_ctss_rev EndothelialCellsMicrovascularD1- bigWig Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_reverse 0 2276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor1.CNhs11925.11265-116G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11265-116G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsMicrovascularD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsMicrovascularDonor1_CNhs11925_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5\ urlLabel FANTOM5 Details:\ EndothelialCellsMicrovascularDonor1_CNhs11925_tpm_rev EndothelialCellsMicrovascularD1- bigWig Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_reverse 1 2276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor1.CNhs11925.11265-116G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Microvascular, donor1_CNhs11925_11265-116G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11265-116G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsMicrovascularD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsMicrovascularDonor1_CNhs11925_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11265-116G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF827ORL ENCSR237VLT Signal bigWig K562 ZBTB40 ENCSR237VLT signal 2 2277 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/ff4b321b-46f7-413a-abf6-7eefd01fcdc4/ENCFF827ORL.bigWig\ color 254,75,173\ longLabel K562 ZBTB40 ENCSR237VLT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR237VLT Signal\ track wgEncodeReg4TfChip_ENCFF827ORL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF664JKL ENCSR293ESL Peak bigBed 5 Brain organoid female embryo 5 days, 90 days post differentiation H3K4me3 peak 4 2277 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/20/5c1becc6-28e3-4371-93d0-d274e6e4e7b7/ENCFF664JKL.bigBed\ color 255,0,0\ longLabel Brain organoid female embryo 5 days, 90 days post differentiation H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR293ESL Peak\ track wgEncodeReg4Epigenetics_ENCFF664JKL\ type bigBed 5\ visibility squish\ EndothelialCellsMicrovascularDonor2_CNhs11376_ctss_fwd EndothelialCellsMicrovascularD2+ bigWig Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_forward 0 2277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor2.CNhs11376.11342-117G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11342-117G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsMicrovascularD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsMicrovascularDonor2_CNhs11376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1\ urlLabel FANTOM5 Details:\ EndothelialCellsMicrovascularDonor2_CNhs11376_tpm_fwd EndothelialCellsMicrovascularD2+ bigWig Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_forward 1 2277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor2.CNhs11376.11342-117G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11342-117G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsMicrovascularD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsMicrovascularDonor2_CNhs11376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF178RIL ENCSR238QRG Peak bigBed 5 HepG2 TBX3 peaks 4 2278 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a6cc4598-b5b7-4385-8be1-407c55088509/ENCFF178RIL.bigBed\ labelFields none\ longLabel HepG2 TBX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR238QRG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF178RIL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF751GGW ENCSR293ESL Signal bigWig Brain organoid female embryo 5 days, 90 days post differentiation H3K4me3 signal 2 2278 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/053b485d-c364-4c70-928e-c1dc4f1e52b0/ENCFF751GGW.bigWig\ color 255,0,0\ longLabel Brain organoid female embryo 5 days, 90 days post differentiation H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR293ESL Signal\ track wgEncodeReg4Epigenetics_ENCFF751GGW\ type bigWig\ visibility full\ EndothelialCellsMicrovascularDonor2_CNhs11376_ctss_rev EndothelialCellsMicrovascularD2- bigWig Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_reverse 0 2278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor2.CNhs11376.11342-117G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11342-117G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsMicrovascularD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsMicrovascularDonor2_CNhs11376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1\ urlLabel FANTOM5 Details:\ EndothelialCellsMicrovascularDonor2_CNhs11376_tpm_rev EndothelialCellsMicrovascularD2- bigWig Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_reverse 1 2278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor2.CNhs11376.11342-117G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Microvascular, donor2_CNhs11376_11342-117G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11342-117G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsMicrovascularD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsMicrovascularDonor2_CNhs11376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11342-117G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF764XDE ENCSR238QRG Signal bigWig HepG2 TBX3 ENCSR238QRG signal 2 2279 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/1830ee19-0ddd-4d1d-93fe-e655f3508c86/ENCFF764XDE.bigWig\ color 137,152,82\ longLabel HepG2 TBX3 ENCSR238QRG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR238QRG Signal\ track wgEncodeReg4TfChip_ENCFF764XDE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF111PQK ENCSR293IGW Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 peak 4 2279 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/0aa3ab34-f4e3-407f-8f63-4d7b500a2a09/ENCFF111PQK.bigBed\ color 255,0,0\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR293IGW Peak\ track wgEncodeReg4Epigenetics_ENCFF111PQK\ type bigBed 5\ visibility squish\ EndothelialCellsMicrovascularDonor3_CNhs12024_ctss_fwd EndothelialCellsMicrovascularD3+ bigWig Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_forward 0 2279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor3.CNhs12024.11414-118F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11414-118F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsMicrovascularD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsMicrovascularDonor3_CNhs12024_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1\ urlLabel FANTOM5 Details:\ EndothelialCellsMicrovascularDonor3_CNhs12024_tpm_fwd EndothelialCellsMicrovascularD3+ bigWig Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_forward 1 2279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor3.CNhs12024.11414-118F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11414-118F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsMicrovascularD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsMicrovascularDonor3_CNhs12024_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF455MKD ENCSR239ZLZ Peak bigBed 5 K562 stably expressing FOSL1 FOSL1 peaks 4 2280 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/85dfce0b-d54e-453d-9683-77b5e39bde90/ENCFF455MKD.bigBed\ labelFields none\ longLabel K562 stably expressing FOSL1 FOSL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR239ZLZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF455MKD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF665FQE ENCSR293IGW Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 signal 2 2280 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e4ea9336-217b-408f-9b33-d46a44501603/ENCFF665FQE.bigWig\ color 255,0,0\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR293IGW Signal\ track wgEncodeReg4Epigenetics_ENCFF665FQE\ type bigWig\ visibility full\ EndothelialCellsMicrovascularDonor3_CNhs12024_ctss_rev EndothelialCellsMicrovascularD3- bigWig Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_reverse 0 2280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor3.CNhs12024.11414-118F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11414-118F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsMicrovascularD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsMicrovascularDonor3_CNhs12024_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1\ urlLabel FANTOM5 Details:\ EndothelialCellsMicrovascularDonor3_CNhs12024_tpm_rev EndothelialCellsMicrovascularD3- bigWig Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_reverse 1 2280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Microvascular%2c%20donor3.CNhs12024.11414-118F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Microvascular, donor3_CNhs12024_11414-118F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11414-118F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsMicrovascularD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsMicrovascularDonor3_CNhs12024_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11414-118F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF759GQV ENCSR239ZLZ Signal bigWig K562 stably expressing FOSL1 FOSL1 ENCSR239ZLZ signal 2 2281 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/160785ea-342a-43bf-b996-dfef44c5b87a/ENCFF759GQV.bigWig\ color 254,75,173\ longLabel K562 stably expressing FOSL1 FOSL1 ENCSR239ZLZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR239ZLZ Signal\ track wgEncodeReg4TfChip_ENCFF759GQV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF417PFZ ENCSR293MTQ Peak bigBed 5 Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 peak 4 2281 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/3587a708-439c-480c-a324-8c6a8e4328ad/ENCFF417PFZ.bigBed\ color 255,0,0\ longLabel Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR293MTQ Peak\ track wgEncodeReg4Epigenetics_ENCFF417PFZ\ type bigBed 5\ visibility squish\ EndothelialCellsThoracicDonor1_CNhs11926_ctss_fwd EndothelialCellsThoracicD1+ bigWig Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_forward 0 2281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor1.CNhs11926.11266-116G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11266-116G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsThoracicD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsThoracicDonor1_CNhs11926_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6\ urlLabel FANTOM5 Details:\ EndothelialCellsThoracicDonor1_CNhs11926_tpm_fwd EndothelialCellsThoracicD1+ bigWig Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_forward 1 2281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor1.CNhs11926.11266-116G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11266-116G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsThoracicD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsThoracicDonor1_CNhs11926_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF003KHP ENCSR240PRQ Peak bigBed 5 HCT116 CTCF peaks 4 2282 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/05eed59b-d6bd-41e0-aeb4-2ed249bebeea/ENCFF003KHP.bigBed\ labelFields none\ longLabel HCT116 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR240PRQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF003KHP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF357DWL ENCSR293MTQ Signal bigWig Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 signal 2 2282 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/1070f9d4-8341-453c-973e-ff7b2b0a0f41/ENCFF357DWL.bigWig\ color 255,0,0\ longLabel Neurosphere embryo 15 weeks originated from ganglionic eminence H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR293MTQ Signal\ track wgEncodeReg4Epigenetics_ENCFF357DWL\ type bigWig\ visibility full\ EndothelialCellsThoracicDonor1_CNhs11926_ctss_rev EndothelialCellsThoracicD1- bigWig Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_reverse 0 2282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor1.CNhs11926.11266-116G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11266-116G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsThoracicD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsThoracicDonor1_CNhs11926_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6\ urlLabel FANTOM5 Details:\ EndothelialCellsThoracicDonor1_CNhs11926_tpm_rev EndothelialCellsThoracicD1- bigWig Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_reverse 1 2282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor1.CNhs11926.11266-116G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Thoracic, donor1_CNhs11926_11266-116G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11266-116G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsThoracicD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsThoracicDonor1_CNhs11926_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11266-116G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF825ECI ENCSR240PRQ Signal bigWig HCT116 CTCF ENCSR240PRQ signal 2 2283 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f636c353-06be-4249-b22c-433081f4a97d/ENCFF825ECI.bigWig\ color 86,86,36\ longLabel HCT116 CTCF ENCSR240PRQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR240PRQ Signal\ track wgEncodeReg4TfChip_ENCFF825ECI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF343LUQ ENCSR294DND Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase peak 4 2283 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/99b8b339-2009-44f3-9765-93784dc1563b/ENCFF343LUQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294DND Peak\ track wgEncodeReg4Epigenetics_ENCFF343LUQ\ type bigBed 5\ visibility squish\ EndothelialCellsThoracicDonor2_CNhs11978_ctss_fwd EndothelialCellsThoracicD2+ bigWig Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_forward 0 2283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor2.CNhs11978.11343-117G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11343-117G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsThoracicD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsThoracicDonor2_CNhs11978_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2\ urlLabel FANTOM5 Details:\ EndothelialCellsThoracicDonor2_CNhs11978_tpm_fwd EndothelialCellsThoracicD2+ bigWig Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_forward 1 2283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor2.CNhs11978.11343-117G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11343-117G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsThoracicD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsThoracicDonor2_CNhs11978_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF096RYC ENCSR241LIH Peak bigBed 5 K562 AFF1 peaks 4 2284 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/81ea3e5b-695d-44b4-bd01-97fbff507668/ENCFF096RYC.bigBed\ labelFields none\ longLabel K562 AFF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR241LIH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF096RYC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF596NYW ENCSR294DND Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase signal 2 2284 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/dac58a58-acbf-43be-9a9a-1f193c8fde65/ENCFF596NYW.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294DND Signal\ track wgEncodeReg4Epigenetics_ENCFF596NYW\ type bigWig\ visibility full\ EndothelialCellsThoracicDonor2_CNhs11978_ctss_rev EndothelialCellsThoracicD2- bigWig Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_reverse 0 2284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor2.CNhs11978.11343-117G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11343-117G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsThoracicD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsThoracicDonor2_CNhs11978_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2\ urlLabel FANTOM5 Details:\ EndothelialCellsThoracicDonor2_CNhs11978_tpm_rev EndothelialCellsThoracicD2- bigWig Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_reverse 1 2284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Thoracic%2c%20donor2.CNhs11978.11343-117G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Thoracic, donor2_CNhs11978_11343-117G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11343-117G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsThoracicD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsThoracicDonor2_CNhs11978_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11343-117G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF003ZRP ENCSR241LIH Signal bigWig K562 AFF1 ENCSR241LIH signal 2 2285 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/15c167e7-6868-4838-97c0-822773b81dee/ENCFF003ZRP.bigWig\ color 254,75,173\ longLabel K562 AFF1 ENCSR241LIH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR241LIH Signal\ track wgEncodeReg4TfChip_ENCFF003ZRP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF573NPT ENCSR294PQF Peak bigBed 5 Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 81 years H3K4me3 peak 4 2285 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/9b06e7ea-963d-4b00-84e7-caf34ce634a1/ENCFF573NPT.bigBed\ color 255,0,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 81 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294PQF Peak\ track wgEncodeReg4Epigenetics_ENCFF573NPT\ type bigBed 5\ visibility squish\ EndothelialCellsUmbilicalVeinDonor1_CNhs10872_ctss_fwd EndothelialCellsUmbilicalVeinD1+ bigWig Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_forward 0 2285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor1.CNhs10872.11243-116E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11243-116E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsUmbilicalVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsUmbilicalVeinDonor1_CNhs10872_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1\ urlLabel FANTOM5 Details:\ EndothelialCellsUmbilicalVeinDonor1_CNhs10872_tpm_fwd EndothelialCellsUmbilicalVeinD1+ bigWig Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_forward 1 2285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor1.CNhs10872.11243-116E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11243-116E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsUmbilicalVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsUmbilicalVeinDonor1_CNhs10872_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF468FCG ENCSR242BGR Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF770 ZNF770 peaks 4 2286 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/1fa11c33-c2f6-4e47-8d53-2a90031ef99d/ENCFF468FCG.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF770 ZNF770 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR242BGR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF468FCG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF238MHL ENCSR294PQF Signal bigWig Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 81 years H3K4me3 signal 2 2286 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/0eb67cd4-77e8-457a-8751-bc64059a7c58/ENCFF238MHL.bigWig\ color 255,0,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294PQF Signal\ track wgEncodeReg4Epigenetics_ENCFF238MHL\ type bigWig\ visibility full\ EndothelialCellsUmbilicalVeinDonor1_CNhs10872_ctss_rev EndothelialCellsUmbilicalVeinD1- bigWig Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_reverse 0 2286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor1.CNhs10872.11243-116E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11243-116E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsUmbilicalVeinD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsUmbilicalVeinDonor1_CNhs10872_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1\ urlLabel FANTOM5 Details:\ EndothelialCellsUmbilicalVeinDonor1_CNhs10872_tpm_rev EndothelialCellsUmbilicalVeinD1- bigWig Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_reverse 1 2286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor1.CNhs10872.11243-116E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Umbilical vein, donor1_CNhs10872_11243-116E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11243-116E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsUmbilicalVeinD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsUmbilicalVeinDonor1_CNhs10872_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11243-116E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF788XXM ENCSR242BGR Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF770 ZNF770 ENCSR242BGR signal 2 2287 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/5802e029-0307-479c-b635-80f1162b19fd/ENCFF788XXM.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF770 ZNF770 ENCSR242BGR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR242BGR Signal\ track wgEncodeReg4TfChip_ENCFF788XXM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF644TXU ENCSR294QCR Peak bigBed 5 Muscle of leg tissue male embryo 97 days DNase peak 4 2287 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/b9124d5d-4ec6-41b8-b68b-eb6e249b606f/ENCFF644TXU.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294QCR Peak\ track wgEncodeReg4Epigenetics_ENCFF644TXU\ type bigBed 5\ visibility squish\ EndothelialCellsUmbilicalVeinDonor2_CNhs11967_ctss_fwd EndothelialCellsUmbilicalVeinD2+ bigWig Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_forward 0 2287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor2.CNhs11967.11324-117E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11324-117E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsUmbilicalVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsUmbilicalVeinDonor2_CNhs11967_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1\ urlLabel FANTOM5 Details:\ EndothelialCellsUmbilicalVeinDonor2_CNhs11967_tpm_fwd EndothelialCellsUmbilicalVeinD2+ bigWig Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_forward 1 2287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor2.CNhs11967.11324-117E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11324-117E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsUmbilicalVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsUmbilicalVeinDonor2_CNhs11967_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF266JIR ENCSR243BPI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219 ZNF219 peaks 4 2288 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/24/609c9fc7-49c9-4df8-8872-91e579d6c3ef/ENCFF266JIR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219 ZNF219 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR243BPI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF266JIR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF653PWS ENCSR294QCR Signal bigWig Muscle of leg tissue male embryo 97 days DNase signal 2 2288 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/ae775fa0-b70a-4b31-95b8-0468fce92833/ENCFF653PWS.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294QCR Signal\ track wgEncodeReg4Epigenetics_ENCFF653PWS\ type bigWig\ visibility full\ EndothelialCellsUmbilicalVeinDonor2_CNhs11967_ctss_rev EndothelialCellsUmbilicalVeinD2- bigWig Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_reverse 0 2288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor2.CNhs11967.11324-117E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11324-117E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsUmbilicalVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsUmbilicalVeinDonor2_CNhs11967_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1\ urlLabel FANTOM5 Details:\ EndothelialCellsUmbilicalVeinDonor2_CNhs11967_tpm_rev EndothelialCellsUmbilicalVeinD2- bigWig Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_reverse 1 2288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor2.CNhs11967.11324-117E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Umbilical vein, donor2_CNhs11967_11324-117E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11324-117E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsUmbilicalVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsUmbilicalVeinDonor2_CNhs11967_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11324-117E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF141VSH ENCSR243BPI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219 ZNF219 ENCSR243BPI signal 2 2289 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/24/c78de404-e14d-44ce-84e0-98661d4c630d/ENCFF141VSH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219 ZNF219 ENCSR243BPI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR243BPI Signal\ track wgEncodeReg4TfChip_ENCFF141VSH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF067UNG ENCSR294YEJ Peak bigBed 5 Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads DNase peak 4 2289 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/d50ceac7-1b24-4038-b2d4-961967f4554a/ENCFF067UNG.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294YEJ Peak\ track wgEncodeReg4Epigenetics_ENCFF067UNG\ type bigBed 5\ visibility squish\ EndothelialCellsUmbilicalVeinDonor3_CNhs12010_ctss_fwd EndothelialCellsUmbilicalVeinD3+ bigWig Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_forward 0 2289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor3.CNhs12010.11400-118D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11400-118D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsUmbilicalVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsUmbilicalVeinDonor3_CNhs12010_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5\ urlLabel FANTOM5 Details:\ EndothelialCellsUmbilicalVeinDonor3_CNhs12010_tpm_fwd EndothelialCellsUmbilicalVeinD3+ bigWig Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_forward 1 2289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor3.CNhs12010.11400-118D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11400-118D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsUmbilicalVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsUmbilicalVeinDonor3_CNhs12010_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF539ULB ENCSR243INX Peak bigBed 5 PC-9 CTCF peaks 4 2290 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/e3022cc6-fc15-43bc-896e-eb5a8de860b3/ENCFF539ULB.bigBed\ labelFields none\ longLabel PC-9 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR243INX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF539ULB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF602LTQ ENCSR294YEJ Signal bigWig Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads DNase signal 2 2290 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/bc1bcdb6-bf0a-4f61-a6bc-b281ae63260c/ENCFF602LTQ.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR294YEJ Signal\ track wgEncodeReg4Epigenetics_ENCFF602LTQ\ type bigWig\ visibility full\ EndothelialCellsUmbilicalVeinDonor3_CNhs12010_ctss_rev EndothelialCellsUmbilicalVeinD3- bigWig Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_reverse 0 2290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor3.CNhs12010.11400-118D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11400-118D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsUmbilicalVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsUmbilicalVeinDonor3_CNhs12010_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5\ urlLabel FANTOM5 Details:\ EndothelialCellsUmbilicalVeinDonor3_CNhs12010_tpm_rev EndothelialCellsUmbilicalVeinD3- bigWig Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_reverse 1 2290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Umbilical%20vein%2c%20donor3.CNhs12010.11400-118D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Umbilical vein, donor3_CNhs12010_11400-118D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11400-118D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsUmbilicalVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsUmbilicalVeinDonor3_CNhs12010_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11400-118D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF936QRH ENCSR243INX Signal bigWig PC-9 CTCF ENCSR243INX signal 2 2291 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/48edea85-4c5b-49d2-aa57-fa3196e6d745/ENCFF936QRH.bigWig\ color 130,163,45\ longLabel PC-9 CTCF ENCSR243INX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR243INX Signal\ track wgEncodeReg4TfChip_ENCFF936QRH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF309EGT ENCSR295DUI Peak bigBed 5 Left kidney tissue female embryo 87 days DNase peak 4 2291 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/93e5357b-8dc5-443e-9701-b648afe4a3c4/ENCFF309EGT.bigBed\ color 6,218,147\ labelFields none\ longLabel Left kidney tissue female embryo 87 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295DUI Peak\ track wgEncodeReg4Epigenetics_ENCFF309EGT\ type bigBed 5\ visibility squish\ EndothelialCellsVeinDonor1_CNhs12497_ctss_fwd EndothelialCellsVeinD1+ bigWig Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward 0 2291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor1.CNhs12497.11267-116G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11267-116G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor1_CNhs12497_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor1_CNhs12497_tpm_fwd EndothelialCellsVeinD1+ bigWig Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward 1 2291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor1.CNhs12497.11267-116G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11267-116G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor1_CNhs12497_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF645WCL ENCSR243LNQ Peak bigBed 5 HepG2 PRPF4 peaks 4 2292 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/0acc41c9-947b-467a-be4c-27981ba7ecb9/ENCFF645WCL.bigBed\ labelFields none\ longLabel HepG2 PRPF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR243LNQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF645WCL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF966VNH ENCSR295DUI Signal bigWig Left kidney tissue female embryo 87 days DNase signal 2 2292 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/599cb146-13d8-4ce3-a7fa-4a1f58b8f210/ENCFF966VNH.bigWig\ color 6,218,147\ longLabel Left kidney tissue female embryo 87 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295DUI Signal\ track wgEncodeReg4Epigenetics_ENCFF966VNH\ type bigWig\ visibility full\ EndothelialCellsVeinDonor1_CNhs12497_ctss_rev EndothelialCellsVeinD1- bigWig Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_reverse 0 2292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor1.CNhs12497.11267-116G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11267-116G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor1_CNhs12497_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor1_CNhs12497_tpm_rev EndothelialCellsVeinD1- bigWig Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_reverse 1 2292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor1.CNhs12497.11267-116G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor1_CNhs12497_11267-116G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11267-116G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor1_CNhs12497_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11267-116G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF830NAH ENCSR243LNQ Signal bigWig HepG2 PRPF4 ENCSR243LNQ signal 2 2293 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/224ec060-72ca-4736-913c-2fa394607892/ENCFF830NAH.bigWig\ color 137,152,82\ longLabel HepG2 PRPF4 ENCSR243LNQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR243LNQ Signal\ track wgEncodeReg4TfChip_ENCFF830NAH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF864DAT ENCSR295ELC Peak bigBed 5 Muscle of back tissue male embryo 97 days DNase peak 4 2293 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d7a14d38-39d2-4dd7-b112-8b49fcae42b4/ENCFF864DAT.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295ELC Peak\ track wgEncodeReg4Epigenetics_ENCFF864DAT\ type bigBed 5\ visibility squish\ EndothelialCellsVeinDonor2_CNhs11377_ctss_fwd EndothelialCellsVeinD2+ bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward 0 2293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor2_CNhs11377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor2_CNhs11377_tpm_fwd EndothelialCellsVeinD2+ bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward 1 2293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor2_CNhs11377_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF354RKX ENCSR244KEW Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (88 years) CTCF peaks 4 2294 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/8d22788a-a485-4931-9e8e-b4b8c0adbd30/ENCFF354RKX.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (88 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR244KEW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF354RKX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF149XYF ENCSR295ELC Signal bigWig Muscle of back tissue male embryo 97 days DNase signal 2 2294 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/1ebdc314-6d18-40ac-a7ca-3630440da4b7/ENCFF149XYF.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295ELC Signal\ track wgEncodeReg4Epigenetics_ENCFF149XYF\ type bigWig\ visibility full\ EndothelialCellsVeinDonor2_CNhs11377_ctss_rev EndothelialCellsVeinD2- bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse 0 2294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor2_CNhs11377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor2_CNhs11377_tpm_rev EndothelialCellsVeinD2- bigWig Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse 1 2294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor2.CNhs11377.11344-117G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor2_CNhs11377_11344-117G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11344-117G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor2_CNhs11377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11344-117G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF072ETP ENCSR244KEW Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (88 years) CTCF ENCSR244KEW signal 2 2295 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/e35079a8-65c9-43b2-88c5-e36bc0830bc6/ENCFF072ETP.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (88 years) CTCF ENCSR244KEW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR244KEW Signal\ track wgEncodeReg4TfChip_ENCFF072ETP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF619QCJ ENCSR295QZX Peak bigBed 5 Multiple sclerosis IgD-negative memory B cell H3K27ac peak 4 2295 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/deea1ac8-a600-4ff2-a756-e7320d8e6358/ENCFF619QCJ.bigBed\ color 181,145,0\ longLabel Multiple sclerosis IgD-negative memory B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295QZX Peak\ track wgEncodeReg4Epigenetics_ENCFF619QCJ\ type bigBed 5\ visibility squish\ EndothelialCellsVeinDonor3_CNhs12026_ctss_fwd EndothelialCellsVeinD3+ bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward 0 2295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor3_CNhs12026_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_tpm_fwd EndothelialCellsVeinD3+ bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward 1 2295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EndothelialCellsVeinDonor3_CNhs12026_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF953ZIP ENCSR244ZAO Peak bigBed 5 Sigmoid colon tissue female adult (51 years) EP300 peaks 4 2296 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/b15f8ee9-9a51-43c7-98a4-6c91e6e19a04/ENCFF953ZIP.bigBed\ labelFields none\ longLabel Sigmoid colon tissue female adult (51 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR244ZAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF953ZIP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF819LAM ENCSR295QZX Signal bigWig Multiple sclerosis IgD-negative memory B cell H3K27ac signal 2 2296 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/c76191fa-2e91-4cf1-88bd-a37457f0535a/ENCFF819LAM.bigWig\ color 181,145,0\ longLabel Multiple sclerosis IgD-negative memory B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295QZX Signal\ track wgEncodeReg4Epigenetics_ENCFF819LAM\ type bigWig\ visibility full\ EndothelialCellsVeinDonor3_CNhs12026_ctss_rev EndothelialCellsVeinD3- bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse 0 2296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EndothelialCellsVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor3_CNhs12026_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ EndothelialCellsVeinDonor3_CNhs12026_tpm_rev EndothelialCellsVeinD3- bigWig Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse 1 2296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Endothelial%20Cells%20-%20Vein%2c%20donor3.CNhs12026.11416-118F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Endothelial Cells - Vein, donor3_CNhs12026_11416-118F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11416-118F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EndothelialCellsVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EndothelialCellsVeinDonor3_CNhs12026_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11416-118F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF623DDK ENCSR244ZAO Signal bigWig Sigmoid colon tissue female adult (51 years) EP300 ENCSR244ZAO signal 2 2297 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/c9c76e5f-d432-47e7-99eb-bdd8880d87fe/ENCFF623DDK.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (51 years) EP300 ENCSR244ZAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR244ZAO Signal\ track wgEncodeReg4TfChip_ENCFF623DDK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF918OIS ENCSR295UXT Peak bigBed 5 CD8-positive, alpha-beta memory T cell DNase peak 4 2297 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/07f0eef7-2426-44d5-8e49-f0b37c01c637/ENCFF918OIS.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta memory T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295UXT Peak\ track wgEncodeReg4Epigenetics_ENCFF918OIS\ type bigBed 5\ visibility squish\ EsophagealEpithelialCellsDonor1_CNhs11323_ctss_fwd EsophagealEpithelialCellsD1+ bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward 0 2297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor1_CNhs11323_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_tpm_fwd EsophagealEpithelialCellsD1+ bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward 1 2297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor1_CNhs11323_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF338DEV ENCSR247XFV Peak bigBed 5 HepG2 CCAR2 peaks 4 2298 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6b2a5a91-e0b4-4562-93fc-6667a05d0cba/ENCFF338DEV.bigBed\ labelFields none\ longLabel HepG2 CCAR2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR247XFV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF338DEV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF606BET ENCSR295UXT Signal bigWig CD8-positive, alpha-beta memory T cell DNase signal 2 2298 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/fa032816-0711-4d52-8011-e0b374d9b427/ENCFF606BET.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta memory T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR295UXT Signal\ track wgEncodeReg4Epigenetics_ENCFF606BET\ type bigWig\ visibility full\ EsophagealEpithelialCellsDonor1_CNhs11323_ctss_rev EsophagealEpithelialCellsD1- bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse 0 2298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor1_CNhs11323_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor1_CNhs11323_tpm_rev EsophagealEpithelialCellsD1- bigWig Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse 1 2298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor1.CNhs11323.11507-119G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor1_CNhs11323_11507-119G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11507-119G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor1_CNhs11323_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11507-119G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF073QXY ENCSR247XFV Signal bigWig HepG2 CCAR2 ENCSR247XFV signal 2 2299 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/2ec08efc-17a0-4e1e-8c78-2f6d1765b744/ENCFF073QXY.bigWig\ color 137,152,82\ longLabel HepG2 CCAR2 ENCSR247XFV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR247XFV Signal\ track wgEncodeReg4TfChip_ENCFF073QXY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF354HOQ ENCSR296JFK Peak bigBed 5 Heart left ventricle tissue male adult 43 years CTCF peak 4 2299 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/cef89504-9c04-4ef0-9895-5912ee45dad8/ENCFF354HOQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart left ventricle tissue male adult 43 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR296JFK Peak\ track wgEncodeReg4Epigenetics_ENCFF354HOQ\ type bigBed 5\ visibility squish\ EsophagealEpithelialCellsDonor2_CNhs12083_ctss_fwd EsophagealEpithelialCellsD2+ bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward 0 2299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor2_CNhs12083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_tpm_fwd EsophagealEpithelialCellsD2+ bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward 1 2299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor2_CNhs12083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF453WJV ENCSR248BVU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF264 ZNF264 peaks 4 2300 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b1f6e644-b534-4a11-b6c7-d49af4e4fa10/ENCFF453WJV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF264 ZNF264 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR248BVU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF453WJV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF915AST ENCSR296JFK Signal bigWig Heart left ventricle tissue male adult 43 years CTCF signal 2 2300 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/f0edebb4-aad0-43af-b027-939e4e9d6468/ENCFF915AST.bigWig\ color 0,176,240\ longLabel Heart left ventricle tissue male adult 43 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR296JFK Signal\ track wgEncodeReg4Epigenetics_ENCFF915AST\ type bigWig\ visibility full\ EsophagealEpithelialCellsDonor2_CNhs12083_ctss_rev EsophagealEpithelialCellsD2- bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse 0 2300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor2_CNhs12083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor2_CNhs12083_tpm_rev EsophagealEpithelialCellsD2- bigWig Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse 1 2300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor2.CNhs12083.11587-120G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor2_CNhs12083_11587-120G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11587-120G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor2_CNhs12083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11587-120G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF601ECV ENCSR248BVU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF264 ZNF264 ENCSR248BVU signal 2 2301 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/6515cc4f-abc7-488e-b0e0-970ae375169b/ENCFF601ECV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF264 ZNF264 ENCSR248BVU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR248BVU Signal\ track wgEncodeReg4TfChip_ENCFF601ECV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF470HLI ENCSR296TFH Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 24 years DNase peak 4 2301 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/87b83a57-be18-470a-a989-cc70df49fe6d/ENCFF470HLI.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR296TFH Peak\ track wgEncodeReg4Epigenetics_ENCFF470HLI\ type bigBed 5\ visibility squish\ EsophagealEpithelialCellsDonor3_CNhs12622_ctss_fwd EsophagealEpithelialCellsD3+ bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward 0 2301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor3_CNhs12622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_tpm_fwd EsophagealEpithelialCellsD3+ bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward 1 2301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track EsophagealEpithelialCellsDonor3_CNhs12622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF728OGE ENCSR248WAU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772 ZNF772 peaks 4 2302 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/334e8150-3ffb-4511-810f-4801709d8644/ENCFF728OGE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772 ZNF772 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR248WAU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF728OGE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF907EIG ENCSR296TFH Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 24 years DNase signal 2 2302 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/6e7f94b0-ac5a-4228-8b46-332404cbdea3/ENCFF907EIG.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR296TFH Signal\ track wgEncodeReg4Epigenetics_ENCFF907EIG\ type bigWig\ visibility full\ EsophagealEpithelialCellsDonor3_CNhs12622_ctss_rev EsophagealEpithelialCellsD3- bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse 0 2302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor3_CNhs12622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ EsophagealEpithelialCellsDonor3_CNhs12622_tpm_rev EsophagealEpithelialCellsD3- bigWig Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse 1 2302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Esophageal%20Epithelial%20Cells%2c%20donor3.CNhs12622.11668-122G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Esophageal Epithelial Cells, donor3_CNhs12622_11668-122G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11668-122G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track EsophagealEpithelialCellsDonor3_CNhs12622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11668-122G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF946BXY ENCSR248WAU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772 ZNF772 ENCSR248WAU signal 2 2303 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/c5135280-07ab-4c7d-aac2-7e3db6734518/ENCFF946BXY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF772 ZNF772 ENCSR248WAU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR248WAU Signal\ track wgEncodeReg4TfChip_ENCFF946BXY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF460WHI ENCSR296YAS Peak bigBed 5 K562 treated with 10 nM Chaetocin for 4 hours ATAC peak 4 2303 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/d59a75ac-0347-43ba-830e-2134da3b5bf5/ENCFF460WHI.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Chaetocin for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR296YAS Peak\ track wgEncodeReg4Epigenetics_ENCFF460WHI\ type bigBed 5\ visibility squish\ FibroblastAorticAdventitialDonor1_CNhs10874_ctss_fwd FibroAorticAdventitialD1+ bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward 0 2303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor1_CNhs10874_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_tpm_fwd FibroAorticAdventitialD1+ bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward 1 2303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor1_CNhs10874_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF547OSS ENCSR249BHQ Peak bigBed 5 K562 ZNF592 peaks 4 2304 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/bf5e094a-8852-47a6-a754-b4fd2162145f/ENCFF547OSS.bigBed\ labelFields none\ longLabel K562 ZNF592 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR249BHQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF547OSS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF756GOW ENCSR296YAS Signal bigWig K562 treated with 10 nM Chaetocin for 4 hours ATAC signal 2 2304 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/09a63d3b-81bf-4e36-9932-0a2a58f0537a/ENCFF756GOW.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Chaetocin for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR296YAS Signal\ track wgEncodeReg4Epigenetics_ENCFF756GOW\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor1_CNhs10874_ctss_rev FibroAorticAdventitialD1- bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse 0 2304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor1_CNhs10874_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor1_CNhs10874_tpm_rev FibroAorticAdventitialD1- bigWig Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse 1 2304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.CNhs10874.11245-116E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor1_CNhs10874_11245-116E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11245-116E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor1_CNhs10874_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11245-116E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF509TWP ENCSR249BHQ Signal bigWig K562 ZNF592 ENCSR249BHQ signal 2 2305 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/a5317ac8-0926-4c4c-878d-14940d23d7d6/ENCFF509TWP.bigWig\ color 254,75,173\ longLabel K562 ZNF592 ENCSR249BHQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR249BHQ Signal\ track wgEncodeReg4TfChip_ENCFF509TWP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF744SRS ENCSR297FIU Peak bigBed 5 CD14-positive monocyte H3K27ac peak 4 2305 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/6fd08da6-4bf6-4dc9-9013-2a6a6c982df3/ENCFF744SRS.bigBed\ color 181,145,0\ longLabel CD14-positive monocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297FIU Peak\ track wgEncodeReg4Epigenetics_ENCFF744SRS\ type bigBed 5\ visibility squish\ FibroblastAorticAdventitialDonor2_CNhs11968_ctss_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward 0 2305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor2_CNhs11968_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_tpm_fwd FibroAorticAdventitialD2+ bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward 1 2305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor2_CNhs11968_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF548CXY ENCSR249EYB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 peaks 4 2306 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/30460a31-941d-4d34-a9e8-52db58b0f30c/ENCFF548CXY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR249EYB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF548CXY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF572CMJ ENCSR297FIU Signal bigWig CD14-positive monocyte H3K27ac signal 2 2306 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/b1150901-638f-4993-9258-a1b17f37ad33/ENCFF572CMJ.bigWig\ color 181,145,0\ longLabel CD14-positive monocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297FIU Signal\ track wgEncodeReg4Epigenetics_ENCFF572CMJ\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor2_CNhs11968_ctss_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse 0 2306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor2_CNhs11968_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor2_CNhs11968_tpm_rev FibroAorticAdventitialD2- bigWig Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse 1 2306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2.CNhs11968.11326-117E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor2_CNhs11968_11326-117E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11326-117E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor2_CNhs11968_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11326-117E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF087ICF ENCSR249EYB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 ENCSR249EYB signal 2 2307 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/ee87fb5e-7049-4f67-be4d-d2747cf75596/ENCFF087ICF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 ENCSR249EYB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR249EYB Signal\ track wgEncodeReg4TfChip_ENCFF087ICF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF222BGB ENCSR297ONS Peak bigBed 5 RWPE2 H3K4me3 peak 4 2307 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/e4bd2a29-8227-47fc-967b-80b4d5e586d6/ENCFF222BGB.bigBed\ color 255,0,0\ longLabel RWPE2 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297ONS Peak\ track wgEncodeReg4Epigenetics_ENCFF222BGB\ type bigBed 5\ visibility squish\ FibroblastAorticAdventitialDonor3_CNhs12011_ctss_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward 0 2307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor3_CNhs12011_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_tpm_fwd FibroAorticAdventitialD3+ bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward 1 2307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastAorticAdventitialDonor3_CNhs12011_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF796IEO ENCSR250WFW Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 peaks 4 2308 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/68997088-4a90-4727-aa4e-f9c7cd0f57f5/ENCFF796IEO.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR250WFW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF796IEO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF744OPP ENCSR297ONS Signal bigWig RWPE2 H3K4me3 signal 2 2308 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/e2e5d559-01b4-4d55-8a0c-bfb1f65e6c01/ENCFF744OPP.bigWig\ color 255,0,0\ longLabel RWPE2 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297ONS Signal\ track wgEncodeReg4Epigenetics_ENCFF744OPP\ type bigWig\ visibility full\ FibroblastAorticAdventitialDonor3_CNhs12011_ctss_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse 0 2308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor3_CNhs12011_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ FibroblastAorticAdventitialDonor3_CNhs12011_tpm_rev FibroAorticAdventitialD3- bigWig Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse 1 2308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3.CNhs12011.11401-118D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Aortic Adventitial, donor3_CNhs12011_11401-118D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11401-118D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroAorticAdventitialD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastAorticAdventitialDonor3_CNhs12011_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11401-118D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF309YZR ENCSR250WFW Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 ENCSR250WFW signal 2 2309 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/f2d678d6-cf7c-4697-ad1f-dfc2e65d878c/ENCFF309YZR.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens RREB1 RREB1 ENCSR250WFW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR250WFW Signal\ track wgEncodeReg4TfChip_ENCFF309YZR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF643PJV ENCSR297ORG Peak bigBed 5 Muscle of leg tissue male embryo 96 days DNase peak 4 2309 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ded87eb8-7611-413f-b61e-bf9590a00b01/ENCFF643PJV.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue male embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297ORG Peak\ track wgEncodeReg4Epigenetics_ENCFF643PJV\ type bigBed 5\ visibility squish\ FibroblastCardiacDonor1_CNhs12498_ctss_fwd FibroCardiacD1+ bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward 0 2309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor1_CNhs12498_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_tpm_fwd FibroCardiacD1+ bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward 1 2309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor1_CNhs12498_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF896AZK ENCSR251BHU Peak bigBed 5 Middle frontal area 46 tissue female adult (82 years) CTCF peaks 4 2310 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/5baa9a80-55ee-415e-ac08-e565ae37a083/ENCFF896AZK.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (82 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR251BHU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF896AZK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF483VJJ ENCSR297ORG Signal bigWig Muscle of leg tissue male embryo 96 days DNase signal 2 2310 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/b0982143-8aa6-42b1-bb30-cea9a3dd3fbf/ENCFF483VJJ.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297ORG Signal\ track wgEncodeReg4Epigenetics_ENCFF483VJJ\ type bigWig\ visibility full\ FibroblastCardiacDonor1_CNhs12498_ctss_rev FibroCardiacD1- bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse 0 2310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor1_CNhs12498_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor1_CNhs12498_tpm_rev FibroCardiacD1- bigWig Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse 1 2310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor1.CNhs12498.11268-116G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor1_CNhs12498_11268-116G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11268-116G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor1_CNhs12498_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11268-116G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF417AGZ ENCSR251BHU Signal bigWig Middle frontal area 46 tissue female adult (82 years) CTCF ENCSR251BHU signal 2 2311 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/858df886-597f-4475-933e-604906276e0f/ENCFF417AGZ.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (82 years) CTCF ENCSR251BHU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR251BHU Signal\ track wgEncodeReg4TfChip_ENCFF417AGZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF211TKE ENCSR297WRG Peak bigBed 5 Head of caudate nucleus tissue female adult 90 or above years DNase peak 4 2311 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/3294ae59-1044-4205-ba4b-b5e1c985031a/ENCFF211TKE.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297WRG Peak\ track wgEncodeReg4Epigenetics_ENCFF211TKE\ type bigBed 5\ visibility squish\ FibroblastCardiacDonor2_CNhs11378_ctss_fwd FibroCardiacD2+ bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward 0 2311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor2_CNhs11378_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_tpm_fwd FibroCardiacD2+ bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward 1 2311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor2_CNhs11378_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF178LKN ENCSR251OVJ Peak bigBed 5 GM12878 SMAD5 peaks 4 2312 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/9d56e45a-5db4-4527-9683-d0fd9e40a74c/ENCFF178LKN.bigBed\ labelFields none\ longLabel GM12878 SMAD5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR251OVJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF178LKN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF905SCU ENCSR297WRG Signal bigWig Head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2312 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/01ae6105-6b03-4030-bf98-45f17965d9f2/ENCFF905SCU.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR297WRG Signal\ track wgEncodeReg4Epigenetics_ENCFF905SCU\ type bigWig\ visibility full\ FibroblastCardiacDonor2_CNhs11378_ctss_rev FibroCardiacD2- bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse 0 2312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor2_CNhs11378_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor2_CNhs11378_tpm_rev FibroCardiacD2- bigWig Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse 1 2312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor2.CNhs11378.11345-117G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor2_CNhs11378_11345-117G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11345-117G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor2_CNhs11378_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11345-117G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF165TMM ENCSR251OVJ Signal bigWig GM12878 SMAD5 ENCSR251OVJ signal 2 2313 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/51430600-7ff4-4e80-bb9c-233bf79eaf75/ENCFF165TMM.bigWig\ color 254,75,173\ longLabel GM12878 SMAD5 ENCSR251OVJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR251OVJ Signal\ track wgEncodeReg4TfChip_ENCFF165TMM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF089RAD ENCSR298KVO Peak bigBed 5 CD8-positive, alpha-beta memory T cell male adult 30 years H3K4me3 peak 4 2313 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/cb714adc-a246-427e-a704-10e3117ba529/ENCFF089RAD.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta memory T cell male adult 30 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298KVO Peak\ track wgEncodeReg4Epigenetics_ENCFF089RAD\ type bigBed 5\ visibility squish\ FibroblastCardiacDonor3_CNhs12027_ctss_fwd FibroCardiacD3+ bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward 0 2313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor3_CNhs12027_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_tpm_fwd FibroCardiacD3+ bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward 1 2313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor3_CNhs12027_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF032QET ENCSR251XFX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1 DMTF1 peaks 4 2314 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/4d3a7156-ad23-4238-9c33-484ada6a98ef/ENCFF032QET.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1 DMTF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR251XFX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF032QET\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF341PJV ENCSR298KVO Signal bigWig CD8-positive, alpha-beta memory T cell male adult 30 years H3K4me3 signal 2 2314 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/82074bc2-a57a-46eb-9ec3-2adf0d3bf51a/ENCFF341PJV.bigWig\ color 255,0,0\ longLabel CD8-positive, alpha-beta memory T cell male adult 30 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298KVO Signal\ track wgEncodeReg4Epigenetics_ENCFF341PJV\ type bigWig\ visibility full\ FibroblastCardiacDonor3_CNhs12027_ctss_rev FibroCardiacD3- bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse 0 2314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor3_CNhs12027_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor3_CNhs12027_tpm_rev FibroCardiacD3- bigWig Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse 1 2314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor3.CNhs12027.11417-118F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor3_CNhs12027_11417-118F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11417-118F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor3_CNhs12027_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11417-118F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF200LWX ENCSR251XFX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1 DMTF1 ENCSR251XFX signal 2 2315 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/e10430ed-5f79-4e76-af02-4c1d2eb11bb3/ENCFF200LWX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMTF1 DMTF1 ENCSR251XFX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR251XFX Signal\ track wgEncodeReg4TfChip_ENCFF200LWX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF248KZV ENCSR298OIK Peak bigBed 5 Heart right ventricle tissue male adult 43 years DNase peak 4 2315 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/2b6dd5b4-bc6d-4927-b1c4-7b9dd95b8a3d/ENCFF248KZV.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue male adult 43 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298OIK Peak\ track wgEncodeReg4Epigenetics_ENCFF248KZV\ type bigBed 5\ visibility squish\ FibroblastCardiacDonor4_CNhs11909_ctss_fwd FibroCardiacD4+ bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward 0 2315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor4_CNhs11909_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_tpm_fwd FibroCardiacD4+ bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward 1 2315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor4_CNhs11909_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF263BLJ ENCSR252QYR Peak bigBed 5 Hepatocyte originated from H9 CTCF peaks 4 2316 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9bffc3b4-212c-4ac6-b327-09845da75ed0/ENCFF263BLJ.bigBed\ labelFields none\ longLabel Hepatocyte originated from H9 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR252QYR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF263BLJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF847FPR ENCSR298OIK Signal bigWig Heart right ventricle tissue male adult 43 years DNase signal 2 2316 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/7f96ea17-1f29-412e-a0aa-adf3856b6484/ENCFF847FPR.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue male adult 43 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298OIK Signal\ track wgEncodeReg4Epigenetics_ENCFF847FPR\ type bigWig\ visibility full\ FibroblastCardiacDonor4_CNhs11909_ctss_rev FibroCardiacD4- bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse 0 2316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor4_CNhs11909_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor4_CNhs11909_tpm_rev FibroCardiacD4- bigWig Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse 1 2316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor4.CNhs11909.11452-119A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor4_CNhs11909_11452-119A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11452-119A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor4_CNhs11909_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11452-119A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF491FMJ ENCSR252QYR Signal bigWig Hepatocyte originated from H9 CTCF ENCSR252QYR signal 2 2317 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/50c53f10-7ec2-4d40-a0d0-03695c2ef3cb/ENCFF491FMJ.bigWig\ color 137,152,82\ longLabel Hepatocyte originated from H9 CTCF ENCSR252QYR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR252QYR Signal\ track wgEncodeReg4TfChip_ENCFF491FMJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF264EVT ENCSR298SDT Peak bigBed 5 Thoracic aorta tissue male adult 37 years DNase peak 4 2317 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/41f5d732-243f-4b99-8e84-0988da5cc708/ENCFF264EVT.bigBed\ color 6,218,147\ labelFields none\ longLabel Thoracic aorta tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298SDT Peak\ track wgEncodeReg4Epigenetics_ENCFF264EVT\ type bigBed 5\ visibility squish\ FibroblastCardiacDonor5_CNhs12057_ctss_fwd FibroCardiacD5+ bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward 0 2317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor5_CNhs12057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_tpm_fwd FibroCardiacD5+ bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward 1 2317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor5_CNhs12057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF055ALO ENCSR252XWG Peak bigBed 5 Lower leg skin tissue male adult (54 years) CTCF peaks 4 2318 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/81f67b60-2c8d-402f-a680-99e6bc8a416d/ENCFF055ALO.bigBed\ labelFields none\ longLabel Lower leg skin tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR252XWG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF055ALO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF156LUX ENCSR298SDT Signal bigWig Thoracic aorta tissue male adult 37 years DNase signal 2 2318 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/c9830345-3783-4846-b70b-bce7392b36fe/ENCFF156LUX.bigWig\ color 6,218,147\ longLabel Thoracic aorta tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298SDT Signal\ track wgEncodeReg4Epigenetics_ENCFF156LUX\ type bigWig\ visibility full\ FibroblastCardiacDonor5_CNhs12057_ctss_rev FibroCardiacD5- bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse 0 2318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor5_CNhs12057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor5_CNhs12057_tpm_rev FibroCardiacD5- bigWig Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse 1 2318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor5.CNhs12057.11456-119A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor5_CNhs12057_11456-119A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11456-119A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor5_CNhs12057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11456-119A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF881OCE ENCSR252XWG Signal bigWig Lower leg skin tissue male adult (54 years) CTCF ENCSR252XWG signal 2 2319 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/5d61d50a-5674-445b-8c10-ee2b1f059fc5/ENCFF881OCE.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue male adult (54 years) CTCF ENCSR252XWG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR252XWG Signal\ track wgEncodeReg4TfChip_ENCFF881OCE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF607YRA ENCSR298ZPF Peak bigBed 5 Gastroesophageal sphincter tissue female adult 51 years CTCF peak 4 2319 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/442550b7-63e4-4c93-815f-a57b6a992d24/ENCFF607YRA.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastroesophageal sphincter tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298ZPF Peak\ track wgEncodeReg4Epigenetics_ENCFF607YRA\ type bigBed 5\ visibility squish\ FibroblastCardiacDonor6_CNhs12061_ctss_fwd FibroCardiacD6+ bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward 0 2319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor6_CNhs12061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_tpm_fwd FibroCardiacD6+ bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward 1 2319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastCardiacDonor6_CNhs12061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF372XNU ENCSR253ALG Peak bigBed 5 Pancreas tissue female adult (61 years) CTCF peaks 4 2320 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/93b65ef4-7bf2-46a8-bba3-76a43f9f6c7b/ENCFF372XNU.bigBed\ labelFields none\ longLabel Pancreas tissue female adult (61 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253ALG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF372XNU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF378JMP ENCSR298ZPF Signal bigWig Gastroesophageal sphincter tissue female adult 51 years CTCF signal 2 2320 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/73c56e55-86a3-4f50-bb27-612e00cf0b85/ENCFF378JMP.bigWig\ color 0,176,240\ longLabel Gastroesophageal sphincter tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR298ZPF Signal\ track wgEncodeReg4Epigenetics_ENCFF378JMP\ type bigWig\ visibility full\ FibroblastCardiacDonor6_CNhs12061_ctss_rev FibroCardiacD6- bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse 0 2320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroCardiacD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor6_CNhs12061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ FibroblastCardiacDonor6_CNhs12061_tpm_rev FibroCardiacD6- bigWig Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse 1 2320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Cardiac%2c%20donor6.CNhs12061.11460-119B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Cardiac, donor6_CNhs12061_11460-119B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11460-119B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroCardiacD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastCardiacDonor6_CNhs12061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11460-119B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF232BMJ ENCSR253ALG Signal bigWig Pancreas tissue female adult (61 years) CTCF ENCSR253ALG signal 2 2321 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/10f1be29-ad0b-40c0-bb0a-1b7fb09052a6/ENCFF232BMJ.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (61 years) CTCF ENCSR253ALG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253ALG Signal\ track wgEncodeReg4TfChip_ENCFF232BMJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF527XWY ENCSR299BQG Signal bigWig T-cell female adult 22 years DNase signal 2 2321 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/19/5d92efcf-bbd2-46ff-9c1d-362ec5156ee2/ENCFF527XWY.bigWig\ color 6,218,147\ longLabel T-cell female adult 22 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299BQG Signal\ track wgEncodeReg4Epigenetics_ENCFF527XWY\ type bigWig\ visibility full\ FibroblastChoroidPlexusDonor1_CNhs11319_ctss_fwd FibroChoroidPlexusD1+ bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward 0 2321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor1_CNhs11319_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_tpm_fwd FibroChoroidPlexusD1+ bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward 1 2321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor1_CNhs11319_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF582WUP ENCSR253CKN Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN21 ZSCAN21 peaks 4 2322 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/e06f4df1-c8b8-4fc6-8d54-6929c9bdec67/ENCFF582WUP.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN21 ZSCAN21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253CKN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF582WUP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF541XPH ENCSR299EQJ Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 81 years H3K27ac peak 4 2322 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/9668838c-d369-4f58-b513-0853408f452f/ENCFF541XPH.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299EQJ Peak\ track wgEncodeReg4Epigenetics_ENCFF541XPH\ type bigBed 5\ visibility squish\ FibroblastChoroidPlexusDonor1_CNhs11319_ctss_rev FibroChoroidPlexusD1- bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse 0 2322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor1_CNhs11319_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor1_CNhs11319_tpm_rev FibroChoroidPlexusD1- bigWig Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse 1 2322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor1.CNhs11319.11492-119E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor1_CNhs11319_11492-119E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11492-119E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor1_CNhs11319_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11492-119E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF212YPB ENCSR253CKN Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN21 ZSCAN21 ENCSR253CKN signal 2 2323 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/380d34bd-b8ec-4d18-a5f9-4791a5892932/ENCFF212YPB.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN21 ZSCAN21 ENCSR253CKN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253CKN Signal\ track wgEncodeReg4TfChip_ENCFF212YPB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF480FCW ENCSR299EQJ Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 81 years H3K27ac signal 2 2323 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/0bf266ef-0fa6-4953-86b2-47eec908a468/ENCFF480FCW.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299EQJ Signal\ track wgEncodeReg4Epigenetics_ENCFF480FCW\ type bigWig\ visibility full\ FibroblastChoroidPlexusDonor2_CNhs12344_ctss_fwd FibroChoroidPlexusD2+ bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward 0 2323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor2_CNhs12344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_tpm_fwd FibroChoroidPlexusD2+ bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward 1 2323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor2_CNhs12344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF157BAG ENCSR253HUM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576 ZNF576 peaks 4 2324 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/8a9837bd-83eb-4510-8225-cf15bdf98a94/ENCFF157BAG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576 ZNF576 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253HUM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF157BAG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF058AZR ENCSR299INS Peak bigBed 5 Right lung tissue female embryo 105 days DNase peak 4 2324 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/ef1cd8e9-a91d-46e3-9f66-c913388fda5f/ENCFF058AZR.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lung tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299INS Peak\ track wgEncodeReg4Epigenetics_ENCFF058AZR\ type bigBed 5\ visibility squish\ FibroblastChoroidPlexusDonor2_CNhs12344_ctss_rev FibroChoroidPlexusD2- bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse 0 2324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor2_CNhs12344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor2_CNhs12344_tpm_rev FibroChoroidPlexusD2- bigWig Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse 1 2324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor2.CNhs12344.11572-120E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor2_CNhs12344_11572-120E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11572-120E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor2_CNhs12344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11572-120E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF767GOH ENCSR253HUM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576 ZNF576 ENCSR253HUM signal 2 2325 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/7b3594c4-054e-4cde-839a-e63b3972d0c3/ENCFF767GOH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF576 ZNF576 ENCSR253HUM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253HUM Signal\ track wgEncodeReg4TfChip_ENCFF767GOH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF753QJC ENCSR299INS Signal bigWig Right lung tissue female embryo 105 days DNase signal 2 2325 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/ecabc531-5f07-42ee-9e67-b208c3a171cb/ENCFF753QJC.bigWig\ color 6,218,147\ longLabel Right lung tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299INS Signal\ track wgEncodeReg4Epigenetics_ENCFF753QJC\ type bigWig\ visibility full\ FibroblastChoroidPlexusDonor3_CNhs12620_ctss_fwd FibroChoroidPlexusD3+ bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward 0 2325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor3_CNhs12620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_tpm_fwd FibroChoroidPlexusD3+ bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward 1 2325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastChoroidPlexusDonor3_CNhs12620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF239LTQ ENCSR253OON Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 peaks 4 2326 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/2f15446f-573b-4465-8ef5-7f35d7f39024/ENCFF239LTQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253OON Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF239LTQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF561MTN ENCSR299LSN Peak bigBed 5 T-cell male adult 42 years ATAC peak 4 2326 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/23fc8134-e038-4b9a-a023-f401cc13c529/ENCFF561MTN.bigBed\ color 2,199,185\ longLabel T-cell male adult 42 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299LSN Peak\ track wgEncodeReg4Epigenetics_ENCFF561MTN\ type bigBed 5\ visibility squish\ FibroblastChoroidPlexusDonor3_CNhs12620_ctss_rev FibroChoroidPlexusD3- bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse 0 2326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroChoroidPlexusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor3_CNhs12620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ FibroblastChoroidPlexusDonor3_CNhs12620_tpm_rev FibroChoroidPlexusD3- bigWig Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse 1 2326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Choroid%20Plexus%2c%20donor3.CNhs12620.11653-122E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Choroid Plexus, donor3_CNhs12620_11653-122E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11653-122E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroChoroidPlexusD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastChoroidPlexusDonor3_CNhs12620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11653-122E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF095RQV ENCSR253OON Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 ENCSR253OON signal 2 2327 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/bf1972ea-3620-4ab3-b3d5-3f9dcab9a3c5/ENCFF095RQV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF1 ATF1 ENCSR253OON signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR253OON Signal\ track wgEncodeReg4TfChip_ENCFF095RQV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF364GFY ENCSR299LSN Signal bigWig T-cell male adult 42 years ATAC signal 2 2327 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/c1223d3b-91f4-4e52-8d0e-ffed262eb54a/ENCFF364GFY.bigWig\ color 2,199,185\ longLabel T-cell male adult 42 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299LSN Signal\ track wgEncodeReg4Epigenetics_ENCFF364GFY\ type bigWig\ visibility full\ FibroblastConjunctivalDonor1_CNhs11339_ctss_fwd FibroConjunctivalD1+ bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward 0 2327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor1_CNhs11339_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_tpm_fwd FibroConjunctivalD1+ bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward 1 2327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor1_CNhs11339_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF895ERR ENCSR254YRM Peak bigBed 5 Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) CTCF peaks 4 2328 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/00235872-5a19-4efc-8d76-8a5d43332296/ENCFF895ERR.bigBed\ labelFields none\ longLabel Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR254YRM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF895ERR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF047XAF ENCSR299QGI Peak bigBed 5 Heart left ventricle tissue male adult 43 years DNase peak 4 2328 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9e04f3a0-4494-492c-bd7c-ef4c4a23a6b2/ENCFF047XAF.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart left ventricle tissue male adult 43 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299QGI Peak\ track wgEncodeReg4Epigenetics_ENCFF047XAF\ type bigBed 5\ visibility squish\ FibroblastConjunctivalDonor1_CNhs11339_ctss_rev FibroConjunctivalD1- bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse 0 2328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor1_CNhs11339_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor1_CNhs11339_tpm_rev FibroConjunctivalD1- bigWig Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse 1 2328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor1.CNhs11339.11531-120A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor1_CNhs11339_11531-120A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11531-120A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor1_CNhs11339_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11531-120A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF725LBV ENCSR254YRM Signal bigWig Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) CTCF ENCSR254YRM signal 2 2329 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/004d5c8c-f1aa-4fd4-93e0-1746c7036509/ENCFF725LBV.bigWig\ color 137,152,82\ longLabel Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) CTCF ENCSR254YRM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR254YRM Signal\ track wgEncodeReg4TfChip_ENCFF725LBV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF380ELC ENCSR299QGI Signal bigWig Heart left ventricle tissue male adult 43 years DNase signal 2 2329 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/c29641f4-0121-4ffe-b79c-b61dc396812f/ENCFF380ELC.bigWig\ color 6,218,147\ longLabel Heart left ventricle tissue male adult 43 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299QGI Signal\ track wgEncodeReg4Epigenetics_ENCFF380ELC\ type bigWig\ visibility full\ FibroblastConjunctivalDonor3_CNhs12734_ctss_fwd FibroConjunctivalD3+ bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward 0 2329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor3_CNhs12734_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_tpm_fwd FibroConjunctivalD3+ bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward 1 2329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastConjunctivalDonor3_CNhs12734_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF620MAT ENCSR255SQR Peak bigBed 5 Left lung tissue male adult (40 years) CTCF peaks 4 2330 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/eb875732-9629-4282-9aaa-2dbecf696ab3/ENCFF620MAT.bigBed\ labelFields none\ longLabel Left lung tissue male adult (40 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR255SQR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF620MAT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF091HGP ENCSR299XIC Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak 4 2330 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c5a09ddd-fe7b-4f18-8f86-b65786bc8c11/ENCFF091HGP.bigBed\ color 255,0,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299XIC Peak\ track wgEncodeReg4Epigenetics_ENCFF091HGP\ type bigBed 5\ visibility squish\ FibroblastConjunctivalDonor3_CNhs12734_ctss_rev FibroConjunctivalD3- bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse 0 2330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroConjunctivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor3_CNhs12734_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ FibroblastConjunctivalDonor3_CNhs12734_tpm_rev FibroConjunctivalD3- bigWig Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse 1 2330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Conjunctival%2c%20donor3.CNhs12734.11692-122I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Conjunctival, donor3_CNhs12734_11692-122I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11692-122I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroConjunctivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastConjunctivalDonor3_CNhs12734_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11692-122I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF002ZEZ ENCSR255SQR Signal bigWig Left lung tissue male adult (40 years) CTCF ENCSR255SQR signal 2 2331 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4bb87388-3add-4c38-9b6b-cd1f6b3dc31c/ENCFF002ZEZ.bigWig\ color 130,163,45\ longLabel Left lung tissue male adult (40 years) CTCF ENCSR255SQR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR255SQR Signal\ track wgEncodeReg4TfChip_ENCFF002ZEZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF811QOJ ENCSR299XIC Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal 2 2331 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/af04c19f-2dcb-4c74-a853-93738f0517b6/ENCFF811QOJ.bigWig\ color 255,0,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR299XIC Signal\ track wgEncodeReg4Epigenetics_ENCFF811QOJ\ type bigWig\ visibility full\ FibroblastDermalDonor1_CNhs12499_ctss_fwd FibroDermalD1+ bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward 0 2331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor1_CNhs12499_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_tpm_fwd FibroDermalD1+ bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward 1 2331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor1_CNhs12499_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF267KQX ENCSR257AFV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF76 ZNF76 peaks 4 2332 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/eff0e389-8e37-4057-92e4-52effa77a8a6/ENCFF267KQX.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF76 ZNF76 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR257AFV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF267KQX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF929FPD ENCSR300DWM Peak bigBed 5 Osteocyte CTCF peak 4 2332 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/ffc32319-50b7-4db0-8c6d-64cb19adc09e/ENCFF929FPD.bigBed\ color 0,176,240\ labelFields none\ longLabel Osteocyte CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR300DWM Peak\ track wgEncodeReg4Epigenetics_ENCFF929FPD\ type bigBed 5\ visibility squish\ FibroblastDermalDonor1_CNhs12499_ctss_rev FibroDermalD1- bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse 0 2332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor1_CNhs12499_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor1_CNhs12499_tpm_rev FibroDermalD1- bigWig Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse 1 2332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor1.CNhs12499.11269-116G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor1_CNhs12499_11269-116G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11269-116G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor1_CNhs12499_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11269-116G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF822VPQ ENCSR257AFV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF76 ZNF76 ENCSR257AFV signal 2 2333 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/0b4b9eda-9dd7-42a6-9cc0-f99a4264d318/ENCFF822VPQ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF76 ZNF76 ENCSR257AFV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR257AFV Signal\ track wgEncodeReg4TfChip_ENCFF822VPQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF897TLT ENCSR300DWM Signal bigWig Osteocyte CTCF signal 2 2333 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2bd8a3cd-3bdc-45b1-ae39-27ee072dc75e/ENCFF897TLT.bigWig\ color 0,176,240\ longLabel Osteocyte CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR300DWM Signal\ track wgEncodeReg4Epigenetics_ENCFF897TLT\ type bigWig\ visibility full\ FibroblastDermalDonor2_CNhs11379_ctss_fwd FibroDermalD2+ bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward 0 2333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor2_CNhs11379_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_tpm_fwd FibroDermalD2+ bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward 1 2333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor2_CNhs11379_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF088XQT ENCSR257RKC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 peaks 4 2334 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/601a8fc0-dcd9-4af1-a649-0b50dd91ae97/ENCFF088XQT.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR257RKC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF088XQT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF749FBO ENCSR300WOR Peak bigBed 5 Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 2334 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/19076655-b550-4363-8c68-cb4b27a490b0/ENCFF749FBO.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR300WOR Peak\ track wgEncodeReg4Epigenetics_ENCFF749FBO\ type bigBed 5\ visibility squish\ FibroblastDermalDonor2_CNhs11379_ctss_rev FibroDermalD2- bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse 0 2334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor2_CNhs11379_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor2_CNhs11379_tpm_rev FibroDermalD2- bigWig Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse 1 2334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor2.CNhs11379.11346-117G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor2_CNhs11379_11346-117G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11346-117G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor2_CNhs11379_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11346-117G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF367AGS ENCSR257RKC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 ENCSR257RKC signal 2 2335 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/111f8c33-a795-44ee-b046-081076ffaefb/ENCFF367AGS.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 ENCSR257RKC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR257RKC Signal\ track wgEncodeReg4TfChip_ENCFF367AGS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF303MTI ENCSR300WOR Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 2335 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ff41e020-7154-45f8-8009-92769a70a4bd/ENCFF303MTI.bigWig\ color 0,176,240\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR300WOR Signal\ track wgEncodeReg4Epigenetics_ENCFF303MTI\ type bigWig\ visibility full\ FibroblastDermalDonor3_CNhs12028_ctss_fwd FibroDermalD3+ bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward 0 2335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor3_CNhs12028_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_tpm_fwd FibroDermalD3+ bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward 1 2335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor3_CNhs12028_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF340RTV ENCSR257XVY Peak bigBed 5 K562 stably expressing ZNF83 ZNF83 peaks 4 2336 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/470ab1a9-8388-4004-b1b3-a2e85dd1d929/ENCFF340RTV.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF83 ZNF83 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR257XVY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF340RTV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF005CDR ENCSR301OGM Peak bigBed 5 NAMALWA treated with Sendai virus for 2 hours DNase peak 4 2336 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/7631a01c-9e6a-4206-b7fd-14d815f9a318/ENCFF005CDR.bigBed\ color 6,218,147\ labelFields none\ longLabel NAMALWA treated with Sendai virus for 2 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR301OGM Peak\ track wgEncodeReg4Epigenetics_ENCFF005CDR\ type bigBed 5\ visibility squish\ FibroblastDermalDonor3_CNhs12028_ctss_rev FibroDermalD3- bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse 0 2336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor3_CNhs12028_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor3_CNhs12028_tpm_rev FibroDermalD3- bigWig Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse 1 2336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor3.CNhs12028.11418-118F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor3_CNhs12028_11418-118F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11418-118F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor3_CNhs12028_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11418-118F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF366DIX ENCSR257XVY Signal bigWig K562 stably expressing ZNF83 ZNF83 ENCSR257XVY signal 2 2337 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ae941f12-c7bc-4ba2-9acb-49ca150c2922/ENCFF366DIX.bigWig\ color 254,75,173\ longLabel K562 stably expressing ZNF83 ZNF83 ENCSR257XVY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR257XVY Signal\ track wgEncodeReg4TfChip_ENCFF366DIX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF066TDJ ENCSR301OGM Signal bigWig NAMALWA treated with Sendai virus for 2 hours DNase signal 2 2337 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/33b32fa2-1520-461b-b37a-bce074e12954/ENCFF066TDJ.bigWig\ color 6,218,147\ longLabel NAMALWA treated with Sendai virus for 2 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR301OGM Signal\ track wgEncodeReg4Epigenetics_ENCFF066TDJ\ type bigWig\ visibility full\ FibroblastDermalDonor4_CNhs12052_ctss_fwd FibroDermalD4+ bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward 0 2337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor4_CNhs12052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_tpm_fwd FibroDermalD4+ bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward 1 2337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor4_CNhs12052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF476NBQ ENCSR259PNW Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (88 years) CTCF peaks 4 2338 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/c30fd8db-4a3d-48a2-b792-29d4d11fa8d8/ENCFF476NBQ.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (88 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR259PNW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF476NBQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF597TFL ENCSR301RCD Peak bigBed 5 Renal pelvis tissue male embryo 127 days DNase peak 4 2338 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/ff632efb-cbcd-454c-80ee-526eb96c2cb8/ENCFF597TFL.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal pelvis tissue male embryo 127 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR301RCD Peak\ track wgEncodeReg4Epigenetics_ENCFF597TFL\ type bigBed 5\ visibility squish\ FibroblastDermalDonor4_CNhs12052_ctss_rev FibroDermalD4- bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse 0 2338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor4_CNhs12052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor4_CNhs12052_tpm_rev FibroDermalD4- bigWig Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse 1 2338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor4.CNhs12052.11450-119A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor4_CNhs12052_11450-119A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11450-119A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor4_CNhs12052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11450-119A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF302UYV ENCSR259PNW Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (88 years) CTCF ENCSR259PNW signal 2 2339 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/0d37d6e6-2ccd-4da9-b83e-c90594ed834d/ENCFF302UYV.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (88 years) CTCF ENCSR259PNW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR259PNW Signal\ track wgEncodeReg4TfChip_ENCFF302UYV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF672MMS ENCSR301RCD Signal bigWig Renal pelvis tissue male embryo 127 days DNase signal 2 2339 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/956dde55-72b5-487a-8eb9-fc0c92b53812/ENCFF672MMS.bigWig\ color 6,218,147\ longLabel Renal pelvis tissue male embryo 127 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR301RCD Signal\ track wgEncodeReg4Epigenetics_ENCFF672MMS\ type bigWig\ visibility full\ FibroblastDermalDonor5_CNhs12055_ctss_fwd FibroDermalD5+ bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward 0 2339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor5_CNhs12055_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_tpm_fwd FibroDermalD5+ bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward 1 2339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor5_CNhs12055_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF581WPG ENCSR260FAS Peak bigBed 5 Neural progenitor cell CTCF peaks 4 2340 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/feff6589-b2f4-4605-9fb1-7c457d4e102d/ENCFF581WPG.bigBed\ labelFields none\ longLabel Neural progenitor cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR260FAS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF581WPG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF649RLC ENCSR302MYX Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak 4 2340 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/8d909d04-a1de-4f42-bbe9-8bfcd19c08bf/ENCFF649RLC.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302MYX Peak\ track wgEncodeReg4Epigenetics_ENCFF649RLC\ type bigBed 5\ visibility squish\ FibroblastDermalDonor5_CNhs12055_ctss_rev FibroDermalD5- bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse 0 2340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor5_CNhs12055_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor5_CNhs12055_tpm_rev FibroDermalD5- bigWig Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse 1 2340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor5.CNhs12055.11454-119A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor5_CNhs12055_11454-119A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11454-119A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor5_CNhs12055_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11454-119A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF900FBY ENCSR260FAS Signal bigWig Neural progenitor cell CTCF ENCSR260FAS signal 2 2341 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/541dbc8c-741d-45e0-a4fe-43c2965816ce/ENCFF900FBY.bigWig\ color 155,155,18\ longLabel Neural progenitor cell CTCF ENCSR260FAS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR260FAS Signal\ track wgEncodeReg4TfChip_ENCFF900FBY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF886OZI ENCSR302MYX Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal 2 2341 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/a0bfe2b2-e6ca-412a-a836-4b480504cd5c/ENCFF886OZI.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302MYX Signal\ track wgEncodeReg4Epigenetics_ENCFF886OZI\ type bigWig\ visibility full\ FibroblastDermalDonor6_CNhs12059_ctss_fwd FibroDermalD6+ bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward 0 2341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor6_CNhs12059_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_tpm_fwd FibroDermalD6+ bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward 1 2341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastDermalDonor6_CNhs12059_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF053HBV ENCSR260GQA Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671 ZNF671 peaks 4 2342 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/01fc2bea-bc95-4a8a-8ff7-c66e764847dc/ENCFF053HBV.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671 ZNF671 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR260GQA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF053HBV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF273JGL ENCSR302NVX Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 ATAC peak 4 2342 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/e124b00f-8f38-4dfb-97ea-09d90b458b60/ENCFF273JGL.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302NVX Peak\ track wgEncodeReg4Epigenetics_ENCFF273JGL\ type bigBed 5\ visibility squish\ FibroblastDermalDonor6_CNhs12059_ctss_rev FibroDermalD6- bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse 0 2342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroDermalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor6_CNhs12059_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ FibroblastDermalDonor6_CNhs12059_tpm_rev FibroDermalD6- bigWig Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse 1 2342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Dermal%2c%20donor6.CNhs12059.11458-119A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Dermal, donor6_CNhs12059_11458-119A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11458-119A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroDermalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastDermalDonor6_CNhs12059_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11458-119A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF702NHJ ENCSR260GQA Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671 ZNF671 ENCSR260GQA signal 2 2343 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/5df8724b-d111-467a-bbe4-846327f57ee4/ENCFF702NHJ.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF671 ZNF671 ENCSR260GQA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR260GQA Signal\ track wgEncodeReg4TfChip_ENCFF702NHJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF432RYK ENCSR302NVX Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 ATAC signal 2 2343 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/4a25ba2d-00f9-448d-8d8e-749928aeb1ce/ENCFF432RYK.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302NVX Signal\ track wgEncodeReg4Epigenetics_ENCFF432RYK\ type bigWig\ visibility full\ FibroblastGingivalDonor1_CNhs10866_ctss_fwd FibroGingivalD1+ bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward 0 2343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor1_CNhs10866_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_tpm_fwd FibroGingivalD1+ bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward 1 2343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor1_CNhs10866_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF588NNG ENCSR260UJI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 peaks 4 2344 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9ef6719d-1c1a-42ce-b8f8-9b09809b58c4/ENCFF588NNG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR260UJI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF588NNG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF413XRG ENCSR302PTB Peak bigBed 5 Stimulated activated memory B cell male adult 40 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC peak 4 2344 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/a9656ae9-3b4a-46a5-ab89-66852769ec50/ENCFF413XRG.bigBed\ color 2,199,185\ longLabel Stimulated activated memory B cell male adult 40 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302PTB Peak\ track wgEncodeReg4Epigenetics_ENCFF413XRG\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor1_CNhs10866_ctss_rev FibroGingivalD1- bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse 0 2344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor1_CNhs10866_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor1_CNhs10866_tpm_rev FibroGingivalD1- bigWig Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse 1 2344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor1.CNhs10866.11237-116D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor1_CNhs10866_11237-116D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11237-116D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor1_CNhs10866_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11237-116D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF871FNK ENCSR260UJI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 ENCSR260UJI signal 2 2345 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4c9c0be2-d537-424f-915d-ac261ba0e26c/ENCFF871FNK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 ENCSR260UJI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR260UJI Signal\ track wgEncodeReg4TfChip_ENCFF871FNK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF216VWI ENCSR302PTB Signal bigWig Stimulated activated memory B cell male adult 40 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC signal 2 2345 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/78a506ab-be9a-4e03-9ff3-a99181873471/ENCFF216VWI.bigWig\ color 2,199,185\ longLabel Stimulated activated memory B cell male adult 40 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302PTB Signal\ track wgEncodeReg4Epigenetics_ENCFF216VWI\ type bigWig\ visibility full\ FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_fwd FibroGingivalD10 (p+ bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward 0 2345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD10 (p+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_fwd FibroGingivalD10 (p+ bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward 1 2345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD10 (p+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF701PYP ENCSR261EDU Peak bigBed 5 HepG2 MNT peaks 4 2346 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/ab161b8d-861e-491e-8c6a-3e02c2e0d529/ENCFF701PYP.bigBed\ labelFields none\ longLabel HepG2 MNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR261EDU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF701PYP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF441AGS ENCSR302RKX Peak bigBed 5 CD8-positive, alpha-beta memory T cell H3K27ac peak 4 2346 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/4526acc1-ae0a-4dfd-90b4-2319e1a81260/ENCFF441AGS.bigBed\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302RKX Peak\ track wgEncodeReg4Epigenetics_ENCFF441AGS\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_rev FibroGingivalD10 (p- bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse 0 2346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD10 (p-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_rev FibroGingivalD10 (p- bigWig Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse 1 2346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor10%20%28periodontitis%29.CNhs14135.11928-125I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor10 (periodontitis)_CNhs14135_11928-125I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11928-125I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD10 (p-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor10Periodontitis_CNhs14135_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11928-125I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF106ZNK ENCSR261EDU Signal bigWig HepG2 MNT ENCSR261EDU signal 2 2347 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/11f3ad99-fbb8-49cb-8048-1788c0cc4449/ENCFF106ZNK.bigWig\ color 137,152,82\ longLabel HepG2 MNT ENCSR261EDU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR261EDU Signal\ track wgEncodeReg4TfChip_ENCFF106ZNK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF431SOK ENCSR302RKX Signal bigWig CD8-positive, alpha-beta memory T cell H3K27ac signal 2 2347 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/38e1632e-009b-496e-b476-018d627515a5/ENCFF431SOK.bigWig\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR302RKX Signal\ track wgEncodeReg4Epigenetics_ENCFF431SOK\ type bigWig\ visibility full\ FibroblastGingivalDonor2_CNhs11961_ctss_fwd FibroGingivalD2+ bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward 0 2347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor2_CNhs11961_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_tpm_fwd FibroGingivalD2+ bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward 1 2347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor2_CNhs11961_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF007NNM ENCSR261UIH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460 ZNF460 peaks 4 2348 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/53f646fe-6447-48df-af40-20fa9ccfb328/ENCFF007NNM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460 ZNF460 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR261UIH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF007NNM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF200GQF ENCSR303GFI Peak bigBed 5 RWPE1 CTCF peak 4 2348 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/ee216340-953c-4fff-a461-4224df05b946/ENCFF200GQF.bigBed\ color 0,176,240\ labelFields none\ longLabel RWPE1 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303GFI Peak\ track wgEncodeReg4Epigenetics_ENCFF200GQF\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor2_CNhs11961_ctss_rev FibroGingivalD2- bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse 0 2348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor2_CNhs11961_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor2_CNhs11961_tpm_rev FibroGingivalD2- bigWig Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse 1 2348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor2.CNhs11961.11318-117D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor2_CNhs11961_11318-117D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11318-117D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor2_CNhs11961_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11318-117D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF461DYQ ENCSR261UIH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460 ZNF460 ENCSR261UIH signal 2 2349 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/78e2414b-c4ad-4160-93e2-263ef761e4c1/ENCFF461DYQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF460 ZNF460 ENCSR261UIH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR261UIH Signal\ track wgEncodeReg4TfChip_ENCFF461DYQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF388NXU ENCSR303GFI Signal bigWig RWPE1 CTCF signal 2 2349 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/2c05a786-6010-4754-b517-d17351f22d87/ENCFF388NXU.bigWig\ color 0,176,240\ longLabel RWPE1 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303GFI Signal\ track wgEncodeReg4Epigenetics_ENCFF388NXU\ type bigWig\ visibility full\ FibroblastGingivalDonor3_CNhs12006_ctss_fwd FibroGingivalD3+ bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward 0 2349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor3_CNhs12006_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_tpm_fwd FibroGingivalD3+ bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward 1 2349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor3_CNhs12006_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF656FBT ENCSR261VAS Peak bigBed 5 Smooth muscle cell originated from H9 CTCF peaks 4 2350 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/4537c457-c883-4683-868c-44cf365340b7/ENCFF656FBT.bigBed\ labelFields none\ longLabel Smooth muscle cell originated from H9 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR261VAS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF656FBT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF588OHL ENCSR303IKJ Peak bigBed 5 Thymus tissue male child 3 years H3K27ac peak 4 2350 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/0f7a6816-20ad-433f-b8bf-70f55b95a47e/ENCFF588OHL.bigBed\ color 181,145,0\ longLabel Thymus tissue male child 3 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303IKJ Peak\ track wgEncodeReg4Epigenetics_ENCFF588OHL\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor3_CNhs12006_ctss_rev FibroGingivalD3- bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse 0 2350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor3_CNhs12006_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor3_CNhs12006_tpm_rev FibroGingivalD3- bigWig Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse 1 2350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor3.CNhs12006.11394-118C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor3_CNhs12006_11394-118C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11394-118C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor3_CNhs12006_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11394-118C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF475BOH ENCSR261VAS Signal bigWig Smooth muscle cell originated from H9 CTCF ENCSR261VAS signal 2 2351 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/26/0a6b2fb3-2341-4c3f-8287-5fb7a470d2e8/ENCFF475BOH.bigWig\ color 137,135,170\ longLabel Smooth muscle cell originated from H9 CTCF ENCSR261VAS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR261VAS Signal\ track wgEncodeReg4TfChip_ENCFF475BOH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF294TTY ENCSR303IKJ Signal bigWig Thymus tissue male child 3 years H3K27ac signal 2 2351 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/fab809f0-96ac-4e38-bd23-68d866cb074c/ENCFF294TTY.bigWig\ color 181,145,0\ longLabel Thymus tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303IKJ Signal\ track wgEncodeReg4Epigenetics_ENCFF294TTY\ type bigWig\ visibility full\ FibroblastGingivalDonor4GFH2_CNhs10848_ctss_fwd FibroGingivalD4+ bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward 0 2351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor4GFH2_CNhs10848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_tpm_fwd FibroGingivalD4+ bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward 1 2351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor4GFH2_CNhs10848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF286KMN ENCSR263DFP Peak bigBed 5 K562 stably expressing PBX2 PBX2 peaks 4 2352 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/e654d24c-6794-4251-be37-7d46928e915e/ENCFF286KMN.bigBed\ labelFields none\ longLabel K562 stably expressing PBX2 PBX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR263DFP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF286KMN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF471TMU ENCSR303JDG Peak bigBed 5 Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak 4 2352 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/af69b10f-bedc-45d9-ada2-383b8f90b152/ENCFF471TMU.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303JDG Peak\ track wgEncodeReg4Epigenetics_ENCFF471TMU\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor4GFH2_CNhs10848_ctss_rev FibroGingivalD4- bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse 0 2352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor4GFH2_CNhs10848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor4GFH2_CNhs10848_tpm_rev FibroGingivalD4- bigWig Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse 1 2352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.CNhs10848.11222-116B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor4 (GFH2)_CNhs10848_11222-116B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11222-116B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor4GFH2_CNhs10848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11222-116B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF376QKW ENCSR263DFP Signal bigWig K562 stably expressing PBX2 PBX2 ENCSR263DFP signal 2 2353 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/24705bd1-8122-475b-a9a1-a7185174c149/ENCFF376QKW.bigWig\ color 254,75,173\ longLabel K562 stably expressing PBX2 PBX2 ENCSR263DFP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR263DFP Signal\ track wgEncodeReg4TfChip_ENCFF376QKW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF997BFO ENCSR303JDG Signal bigWig Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal 2 2353 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/c0d381d8-aaf9-4e73-937d-d2459e378834/ENCFF997BFO.bigWig\ color 6,218,147\ longLabel Activated T-cell female adult 21 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303JDG Signal\ track wgEncodeReg4Epigenetics_ENCFF997BFO\ type bigWig\ visibility full\ FibroblastGingivalDonor5GFH3_CNhs11952_ctss_fwd FibroGingivalD5+ bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward 0 2353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor5GFH3_CNhs11952_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_tpm_fwd FibroGingivalD5+ bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward 1 2353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor5GFH3_CNhs11952_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF450KKE ENCSR263XFO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83 ZNF83 peaks 4 2354 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/5d37f49e-7336-4a91-8166-bf61ba8c5bf0/ENCFF450KKE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83 ZNF83 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR263XFO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF450KKE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF641WRL ENCSR303NUP Peak bigBed 5 K562 treated with 5 μM C646 for 12 hours ATAC peak 4 2354 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/4c1e6646-8a41-4383-800f-a006fd6053bf/ENCFF641WRL.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM C646 for 12 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303NUP Peak\ track wgEncodeReg4Epigenetics_ENCFF641WRL\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor5GFH3_CNhs11952_ctss_rev FibroGingivalD5- bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse 0 2354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor5GFH3_CNhs11952_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor5GFH3_CNhs11952_tpm_rev FibroGingivalD5- bigWig Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse 1 2354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor5%20%28GFH3%29.CNhs11952.11303-117B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor5 (GFH3)_CNhs11952_11303-117B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11303-117B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor5GFH3_CNhs11952_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11303-117B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF937DKK ENCSR263XFO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83 ZNF83 ENCSR263XFO signal 2 2355 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/2f55745f-69cf-4fdb-871f-2192962e1967/ENCFF937DKK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF83 ZNF83 ENCSR263XFO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR263XFO Signal\ track wgEncodeReg4TfChip_ENCFF937DKK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF566JBM ENCSR303NUP Signal bigWig K562 treated with 5 μM C646 for 12 hours ATAC signal 2 2355 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/f52d1de2-9059-481e-9bab-7265efc42dba/ENCFF566JBM.bigWig\ color 2,199,185\ longLabel K562 treated with 5 μM C646 for 12 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303NUP Signal\ track wgEncodeReg4Epigenetics_ENCFF566JBM\ type bigWig\ visibility full\ FibroblastGingivalDonor6Control_CNhs14129_ctss_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward 0 2355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6Control_CNhs14129_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward 1 2355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF358SRK ENCSR264LQX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383 ZNF383 peaks 4 2356 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/10d941f4-2cf3-4949-98fc-59f8bd340bcd/ENCFF358SRK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383 ZNF383 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR264LQX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF358SRK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF302RSQ ENCSR303PWB Peak bigBed 5 Esophagus mucosa tissue female adult 47 years ATAC peak 4 2356 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/5cabfcfa-2847-4e7c-a6e4-82b572a347b6/ENCFF302RSQ.bigBed\ color 2,199,185\ longLabel Esophagus mucosa tissue female adult 47 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303PWB Peak\ track wgEncodeReg4Epigenetics_ENCFF302RSQ\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward 0 2356 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6Control_CNhs14129_tpm_fwd FibroGingivalD6+ bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward 1 2356 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor6Control_CNhs14129_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF845ACQ ENCSR264LQX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383 ZNF383 ENCSR264LQX signal 2 2357 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/fc1695e3-1bac-4db5-aad0-2ec8c36d22e2/ENCFF845ACQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF383 ZNF383 ENCSR264LQX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR264LQX Signal\ track wgEncodeReg4TfChip_ENCFF845ACQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477VDG ENCSR303PWB Signal bigWig Esophagus mucosa tissue female adult 47 years ATAC signal 2 2357 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/4fa104e1-22eb-44a1-b3d0-75ded7b64ac0/ENCFF477VDG.bigWig\ color 2,199,185\ longLabel Esophagus mucosa tissue female adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303PWB Signal\ track wgEncodeReg4Epigenetics_ENCFF477VDG\ type bigWig\ visibility full\ FibroblastGingivalDonor6Control_CNhs14129_ctss_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse 0 2357 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6Control_CNhs14129_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse 1 2357 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF333SNB ENCSR264RJX Peak bigBed 5 GM23338 originated from GM23248 POU5F1 peaks 4 2358 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/58a5ac5b-fda8-4469-93c2-feee3205e072/ENCFF333SNB.bigBed\ labelFields none\ longLabel GM23338 originated from GM23248 POU5F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR264RJX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF333SNB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF319BLQ ENCSR303YII Peak bigBed 5 Muscle of arm tissue male embryo 96 days DNase peak 4 2358 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c8a9b0e7-3499-4e89-b0e3-52e6db3816e9/ENCFF319BLQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue male embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303YII Peak\ track wgEncodeReg4Epigenetics_ENCFF319BLQ\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse 0 2358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28aggressive%20periodontitis%29.CNhs14128.11921-125H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (aggressive periodontitis)_CNhs14128_11921-125H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11921-125H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6AggressivePeriodontitis_CNhs14128_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11921-125H4\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor6Control_CNhs14129_tpm_rev FibroGingivalD6- bigWig Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse 1 2358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor6%20%28control%29.CNhs14129.11922-125H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor6 (control)_CNhs14129_11922-125H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11922-125H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor6Control_CNhs14129_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11922-125H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF907QXU ENCSR264RJX Signal bigWig GM23338 originated from GM23248 POU5F1 ENCSR264RJX signal 2 2359 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/e433cbba-bc0b-41f4-b967-dec1adf0cbf3/ENCFF907QXU.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 POU5F1 ENCSR264RJX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR264RJX Signal\ track wgEncodeReg4TfChip_ENCFF907QXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF552OOR ENCSR303YII Signal bigWig Muscle of arm tissue male embryo 96 days DNase signal 2 2359 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/bf2e4d30-1e3d-4e90-b2a1-01c842915a84/ENCFF552OOR.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR303YII Signal\ track wgEncodeReg4Epigenetics_ENCFF552OOR\ type bigWig\ visibility full\ FibroblastGingivalDonor7Control_CNhs14131_ctss_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward 0 2359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7Control_CNhs14131_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7Control_CNhs14131_tpm_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward 1 2359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7Control_CNhs14131_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF113IGR ENCSR264SRY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512 ZNF512 peaks 4 2360 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/f6abf778-05fa-425f-8f8b-c4fcc9d73b94/ENCFF113IGR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512 ZNF512 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR264SRY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF113IGR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF696SFA ENCSR304CXS Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak 4 2360 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/b19b0ffe-559d-4da4-996e-9ae18e4599e8/ENCFF696SFA.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304CXS Peak\ track wgEncodeReg4Epigenetics_ENCFF696SFA\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward 0 2360 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_fwd FibroGingivalD7+ bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward 1 2360 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF245BVG ENCSR264SRY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512 ZNF512 ENCSR264SRY signal 2 2361 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/d3df40ad-7962-4731-9cbe-d92307c2cd74/ENCFF245BVG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512 ZNF512 ENCSR264SRY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR264SRY Signal\ track wgEncodeReg4TfChip_ENCFF245BVG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF731DST ENCSR304CXS Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal 2 2361 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/eb8271ab-74bb-4e3c-84b6-d504b34e3333/ENCFF731DST.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304CXS Signal\ track wgEncodeReg4Epigenetics_ENCFF731DST\ type bigWig\ visibility full\ FibroblastGingivalDonor7Control_CNhs14131_ctss_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse 0 2361 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7Control_CNhs14131_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7Control_CNhs14131_tpm_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse 1 2361 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28control%29.CNhs14131.11924-125H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (control)_CNhs14131_11924-125H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11924-125H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7Control_CNhs14131_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11924-125H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF858YQT ENCSR265ARE Peak bigBed 5 VCaP CTCF peaks 4 2362 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7c6d5c2f-483a-4d65-af7f-019a4f84f0cf/ENCFF858YQT.bigBed\ labelFields none\ longLabel VCaP CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR265ARE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF858YQT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF046GHC ENCSR304UWR Peak bigBed 5 K562 treated with 100 nM GSK J4 for 12 hours ATAC peak 4 2362 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/79985a4d-e49e-432e-8a8f-d06fed06ffa6/ENCFF046GHC.bigBed\ color 2,199,185\ longLabel K562 treated with 100 nM GSK J4 for 12 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304UWR Peak\ track wgEncodeReg4Epigenetics_ENCFF046GHC\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse 0 2362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_rev FibroGingivalD7- bigWig Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse 1 2362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor7%20%28aggressive%20periodontitis%29.CNhs14130.11923-125H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor7 (aggressive periodontitis)_CNhs14130_11923-125H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11923-125H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD7-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor7AggressivePeriodontitis_CNhs14130_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11923-125H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF328ACZ ENCSR265ARE Signal bigWig VCaP CTCF ENCSR265ARE signal 2 2363 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/790ca0c5-38a2-451f-a6f3-77b980a44db2/ENCFF328ACZ.bigWig\ color 140,140,140\ longLabel VCaP CTCF ENCSR265ARE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR265ARE Signal\ track wgEncodeReg4TfChip_ENCFF328ACZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF649HKC ENCSR304UWR Signal bigWig K562 treated with 100 nM GSK J4 for 12 hours ATAC signal 2 2363 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/080d4dc8-d3c3-43db-a854-b848b36dcc9e/ENCFF649HKC.bigWig\ color 2,199,185\ longLabel K562 treated with 100 nM GSK J4 for 12 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304UWR Signal\ track wgEncodeReg4Epigenetics_ENCFF649HKC\ type bigWig\ visibility full\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward 0 2363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_tpm_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward 1 2363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8Control_CNhs14133_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF269EDN ENCSR265PFQ Peak bigBed 5 Body of pancreas tissue male adult (54 years) CTCF peaks 4 2364 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/3b5564dd-8a0b-4380-901e-c5db77ed14c4/ENCFF269EDN.bigBed\ labelFields none\ longLabel Body of pancreas tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR265PFQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF269EDN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF277RMX ENCSR304XUZ Peak bigBed 5 Breast epithelium tissue female adult 53 years CTCF peak 4 2364 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ea1d5c03-f89d-45c3-a20c-c15bf4f93d17/ENCFF277RMX.bigBed\ color 0,176,240\ labelFields none\ longLabel Breast epithelium tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304XUZ Peak\ track wgEncodeReg4Epigenetics_ENCFF277RMX\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor8Control_CNhs14133_ctss_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward 0 2364 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8Control_CNhs14133_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_fwd FibroGingivalD8+ bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward 1 2364 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF078UTK ENCSR265PFQ Signal bigWig Body of pancreas tissue male adult (54 years) CTCF ENCSR265PFQ signal 2 2365 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/2df99da4-9347-4d2c-9a67-414657aa2db3/ENCFF078UTK.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue male adult (54 years) CTCF ENCSR265PFQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR265PFQ Signal\ track wgEncodeReg4TfChip_ENCFF078UTK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF249SYO ENCSR304XUZ Signal bigWig Breast epithelium tissue female adult 53 years CTCF signal 2 2365 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/fc6db2c9-ad97-4d9e-90c3-a9d7ba55a74c/ENCFF249SYO.bigWig\ color 0,176,240\ longLabel Breast epithelium tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304XUZ Signal\ track wgEncodeReg4Epigenetics_ENCFF249SYO\ type bigWig\ visibility full\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse 0 2365 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8Control_CNhs14133_tpm_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse 1 2365 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8Control_CNhs14133_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF948KTQ ENCSR265WJC Peak bigBed 5 MCF-7 stably expressing KLF4 KLF4 peaks 4 2366 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f79992c0-7016-4d04-bcc0-0fa781ce9908/ENCFF948KTQ.bigBed\ labelFields none\ longLabel MCF-7 stably expressing KLF4 KLF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR265WJC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF948KTQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF380QAC ENCSR304ZDQ Peak bigBed 5 GM18873 ATAC peak 4 2366 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/14e69909-b6a2-4207-932a-349e28786151/ENCFF380QAC.bigBed\ color 2,199,185\ longLabel GM18873 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304ZDQ Peak\ track wgEncodeReg4Epigenetics_ENCFF380QAC\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor8Control_CNhs14133_ctss_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse 0 2366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28control%29.CNhs14133.11926-125H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (control)_CNhs14133_11926-125H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11926-125H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8Control_CNhs14133_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11926-125H9\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_rev FibroGingivalD8- bigWig Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse 1 2366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor8%20%28chronic%20periodontitis%29.CNhs14132.11925-125H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor8 (chronic periodontitis)_CNhs14132_11925-125H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11925-125H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor8ChronicPeriodontitis_CNhs14132_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11925-125H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF543VDM ENCSR265WJC Signal bigWig MCF-7 stably expressing KLF4 KLF4 ENCSR265WJC signal 2 2367 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e2c8ec61-25aa-4aee-b3de-ef1647ee6cf0/ENCFF543VDM.bigWig\ color 65,171,173\ longLabel MCF-7 stably expressing KLF4 KLF4 ENCSR265WJC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR265WJC Signal\ track wgEncodeReg4TfChip_ENCFF543VDM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF430JWO ENCSR304ZDQ Signal bigWig GM18873 ATAC signal 2 2367 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/c35731f0-d852-4492-ab19-fcce766698c5/ENCFF430JWO.bigWig\ color 2,199,185\ longLabel GM18873 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR304ZDQ Signal\ track wgEncodeReg4Epigenetics_ENCFF430JWO\ type bigWig\ visibility full\ FibroblastGingivalDonor9Control_CNhs14134_ctss_fwd FibroGingivalD9+ bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward 0 2367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD9+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor9Control_CNhs14134_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_tpm_fwd FibroGingivalD9+ bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward 1 2367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD9+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastGingivalDonor9Control_CNhs14134_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF825QXK ENCSR266CJT Peak bigBed 5 Spleen tissue female adult (59 years) CTCF peaks 4 2368 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/ac38b513-9b53-4e75-9174-528c26deb6b7/ENCFF825QXK.bigBed\ labelFields none\ longLabel Spleen tissue female adult (59 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266CJT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF825QXK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF769DTP ENCSR305ISQ Peak bigBed 5 Mucosa of rectum tissue female adult 50 years H3K27ac peak 4 2368 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/29354d43-12bb-4292-ba0e-fd2fef2e2d24/ENCFF769DTP.bigBed\ color 181,145,0\ longLabel Mucosa of rectum tissue female adult 50 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305ISQ Peak\ track wgEncodeReg4Epigenetics_ENCFF769DTP\ type bigBed 5\ visibility squish\ FibroblastGingivalDonor9Control_CNhs14134_ctss_rev FibroGingivalD9- bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse 0 2368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroGingivalD9-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor9Control_CNhs14134_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ FibroblastGingivalDonor9Control_CNhs14134_tpm_rev FibroGingivalD9- bigWig Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse 1 2368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Gingival%2c%20donor9%20%28control%29.CNhs14134.11927-125I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Gingival, donor9 (control)_CNhs14134_11927-125I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11927-125I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroGingivalD9-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastGingivalDonor9Control_CNhs14134_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11927-125I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF161AWO ENCSR266CJT Signal bigWig Spleen tissue female adult (59 years) CTCF ENCSR266CJT signal 2 2369 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/aaf3f2ef-15a1-440d-a2e5-9a44e594cb98/ENCFF161AWO.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (59 years) CTCF ENCSR266CJT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266CJT Signal\ track wgEncodeReg4TfChip_ENCFF161AWO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF907XXC ENCSR305ISQ Signal bigWig Mucosa of rectum tissue female adult 50 years H3K27ac signal 2 2369 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/1f677031-c7b0-418f-a8ad-0586c0c593ab/ENCFF907XXC.bigWig\ color 181,145,0\ longLabel Mucosa of rectum tissue female adult 50 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305ISQ Signal\ track wgEncodeReg4Epigenetics_ENCFF907XXC\ type bigWig\ visibility full\ FibroblastLungDonor1_CNhs12500_ctss_fwd FibroLungD1+ bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward 0 2369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor1_CNhs12500_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_tpm_fwd FibroLungD1+ bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward 1 2369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor1_CNhs12500_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF016NZF ENCSR266HHO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX peaks 4 2370 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/f913e2d3-6c4c-424e-b58b-31143ec7174e/ENCFF016NZF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266HHO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF016NZF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF971HZL ENCSR305QTE Peak bigBed 5 Natural killer cell male adult 47 years ATAC peak 4 2370 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/f56b5c87-3d7f-4d51-a160-dd4b3f788173/ENCFF971HZL.bigBed\ color 2,199,185\ longLabel Natural killer cell male adult 47 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305QTE Peak\ track wgEncodeReg4Epigenetics_ENCFF971HZL\ type bigBed 5\ visibility squish\ FibroblastLungDonor1_CNhs12500_ctss_rev FibroLungD1- bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse 0 2370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor1_CNhs12500_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ FibroblastLungDonor1_CNhs12500_tpm_rev FibroLungD1- bigWig Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse 1 2370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor1.CNhs12500.11270-116H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor1_CNhs12500_11270-116H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11270-116H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor1_CNhs12500_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11270-116H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF673CRJ ENCSR266HHO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX ENCSR266HHO signal 2 2371 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/a835cdb5-a5ee-4033-a97f-0407d46b09d5/ENCFF673CRJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX ENCSR266HHO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266HHO Signal\ track wgEncodeReg4TfChip_ENCFF673CRJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF194EMK ENCSR305QTE Signal bigWig Natural killer cell male adult 47 years ATAC signal 2 2371 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/2ba1fdad-0a14-4396-ac91-f14956aa6b05/ENCFF194EMK.bigWig\ color 2,199,185\ longLabel Natural killer cell male adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305QTE Signal\ track wgEncodeReg4Epigenetics_ENCFF194EMK\ type bigWig\ visibility full\ FibroblastLungDonor2_CNhs11380_ctss_fwd FibroLungD2+ bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward 0 2371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor2_CNhs11380_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_tpm_fwd FibroLungD2+ bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward 1 2371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor2_CNhs11380_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF884RED ENCSR266UTR Peak bigBed 5 Esophagus squamous epithelium tissue female adult (51 years) CTCF peaks 4 2372 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/ab8a1400-7fd4-46f3-8c04-5b015485acc0/ENCFF884RED.bigBed\ labelFields none\ longLabel Esophagus squamous epithelium tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266UTR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF884RED\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF496DLM ENCSR305UJX Peak bigBed 5 Heart tissue male child 3 years DNase peak 4 2372 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/4d6694c2-9eee-4e0f-b0b7-197cad7fae60/ENCFF496DLM.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue male child 3 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305UJX Peak\ track wgEncodeReg4Epigenetics_ENCFF496DLM\ type bigBed 5\ visibility squish\ FibroblastLungDonor2_CNhs11380_ctss_rev FibroLungD2- bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse 0 2372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor2_CNhs11380_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor2_CNhs11380_tpm_rev FibroLungD2- bigWig Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse 1 2372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor2.CNhs11380.11347-117G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor2_CNhs11380_11347-117G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11347-117G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor2_CNhs11380_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11347-117G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF078VHA ENCSR266UTR Signal bigWig Esophagus squamous epithelium tissue female adult (51 years) CTCF ENCSR266UTR signal 2 2373 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/3b661ff0-420b-4825-96e4-c33ff9eae38b/ENCFF078VHA.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (51 years) CTCF ENCSR266UTR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266UTR Signal\ track wgEncodeReg4TfChip_ENCFF078VHA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF750JAY ENCSR305UJX Signal bigWig Heart tissue male child 3 years DNase signal 2 2373 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/f57b911c-1f86-4c5a-88c6-adc78f1b6521/ENCFF750JAY.bigWig\ color 6,218,147\ longLabel Heart tissue male child 3 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305UJX Signal\ track wgEncodeReg4Epigenetics_ENCFF750JAY\ type bigWig\ visibility full\ FibroblastLungDonor3_CNhs12029_ctss_fwd FibroLungD3+ bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward 0 2373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor3_CNhs12029_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_tpm_fwd FibroLungD3+ bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward 1 2373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLungDonor3_CNhs12029_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF028DPU ENCSR266XFE Peak bigBed 5 Spleen tissue male adult (54 years) POLR2A peaks 4 2374 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/d25c0246-5429-443b-8713-dc476b7492ba/ENCFF028DPU.bigBed\ labelFields none\ longLabel Spleen tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266XFE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF028DPU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF607XYU ENCSR305WAA Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 2374 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/2d176f13-24f2-4400-a719-e1d27edec329/ENCFF607XYU.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305WAA Peak\ track wgEncodeReg4Epigenetics_ENCFF607XYU\ type bigBed 5\ visibility squish\ FibroblastLungDonor3_CNhs12029_ctss_rev FibroLungD3- bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse 0 2374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLungD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor3_CNhs12029_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ FibroblastLungDonor3_CNhs12029_tpm_rev FibroLungD3- bigWig Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse 1 2374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lung%2c%20donor3.CNhs12029.11419-118F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lung, donor3_CNhs12029_11419-118F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11419-118F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLungD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLungDonor3_CNhs12029_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11419-118F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF386LSE ENCSR266XFE Signal bigWig Spleen tissue male adult (54 years) POLR2A ENCSR266XFE signal 2 2375 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/23007fe5-d0f9-4ccd-8630-2433af8aa184/ENCFF386LSE.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (54 years) POLR2A ENCSR266XFE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266XFE Signal\ track wgEncodeReg4TfChip_ENCFF386LSE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF172WCN ENCSR305WAA Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2375 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/123a9363-3a97-46b5-a1fc-95fa27b78cc7/ENCFF172WCN.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305WAA Signal\ track wgEncodeReg4Epigenetics_ENCFF172WCN\ type bigWig\ visibility full\ FibroblastLymphaticDonor1_CNhs11322_ctss_fwd FibroLymphaticD1+ bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward 0 2375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor1_CNhs11322_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_tpm_fwd FibroLymphaticD1+ bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward 1 2375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor1_CNhs11322_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF411ACD ENCSR266ZUX Peak bigBed 5 Nephron organoid female embryo (5 days): 35 days post differentiation CTCF peaks 4 2376 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/06a0f6cc-726f-447b-bcd2-8babc0419f0c/ENCFF411ACD.bigBed\ labelFields none\ longLabel Nephron organoid female embryo (5 days): 35 days post differentiation CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266ZUX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF411ACD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF081JVF ENCSR305WLF Peak bigBed 5 T-cell male adult 25 years DNase peak 4 2376 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/583e3e68-22c4-41df-bce0-e9c3a009dbae/ENCFF081JVF.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 25 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305WLF Peak\ track wgEncodeReg4Epigenetics_ENCFF081JVF\ type bigBed 5\ visibility squish\ FibroblastLymphaticDonor1_CNhs11322_ctss_rev FibroLymphaticD1- bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse 0 2376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor1_CNhs11322_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor1_CNhs11322_tpm_rev FibroLymphaticD1- bigWig Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse 1 2376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor1.CNhs11322.11506-119G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor1_CNhs11322_11506-119G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11506-119G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor1_CNhs11322_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11506-119G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF947KDR ENCSR266ZUX Signal bigWig Nephron organoid female embryo (5 days): 35 days post differentiation CTCF ENCSR266ZUX signal 2 2377 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/79e0f880-ae57-4295-ba3a-0b708ffa8b77/ENCFF947KDR.bigWig\ color 92,161,153\ longLabel Nephron organoid female embryo (5 days): 35 days post differentiation CTCF ENCSR266ZUX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR266ZUX Signal\ track wgEncodeReg4TfChip_ENCFF947KDR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF118VBY ENCSR305WLF Signal bigWig T-cell male adult 25 years DNase signal 2 2377 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/6e01db7b-964e-4962-88e4-94b312b119ca/ENCFF118VBY.bigWig\ color 6,218,147\ longLabel T-cell male adult 25 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305WLF Signal\ track wgEncodeReg4Epigenetics_ENCFF118VBY\ type bigWig\ visibility full\ FibroblastLymphaticDonor2_CNhs12082_ctss_fwd FibroLymphaticD2+ bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward 0 2377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor2_CNhs12082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_tpm_fwd FibroLymphaticD2+ bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward 1 2377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor2_CNhs12082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF600IFL ENCSR267DFA Peak bigBed 5 HepG2 FOXA1 peaks 4 2378 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/4c39cd3e-adbe-4c71-a246-3f3d60f68f65/ENCFF600IFL.bigBed\ labelFields none\ longLabel HepG2 FOXA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR267DFA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF600IFL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF398GVK ENCSR305XRF Peak bigBed 5 HG03175 ATAC peak 4 2378 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/b11fa93c-5f46-4b46-98e2-1855fffcaf3c/ENCFF398GVK.bigBed\ color 2,199,185\ longLabel HG03175 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305XRF Peak\ track wgEncodeReg4Epigenetics_ENCFF398GVK\ type bigBed 5\ visibility squish\ FibroblastLymphaticDonor2_CNhs12082_ctss_rev FibroLymphaticD2- bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse 0 2378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor2_CNhs12082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor2_CNhs12082_tpm_rev FibroLymphaticD2- bigWig Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse 1 2378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor2.CNhs12082.11586-120G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor2_CNhs12082_11586-120G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11586-120G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor2_CNhs12082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11586-120G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF642LBY ENCSR267DFA Signal bigWig HepG2 FOXA1 ENCSR267DFA signal 2 2379 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/1cc871b4-a8f0-4c78-97df-c06e9eb45f47/ENCFF642LBY.bigWig\ color 137,152,82\ longLabel HepG2 FOXA1 ENCSR267DFA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR267DFA Signal\ track wgEncodeReg4TfChip_ENCFF642LBY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF101BDO ENCSR305XRF Signal bigWig HG03175 ATAC signal 2 2379 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/dbfac5f0-adbf-4146-bd1f-f619e973753a/ENCFF101BDO.bigWig\ color 2,199,185\ longLabel HG03175 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR305XRF Signal\ track wgEncodeReg4Epigenetics_ENCFF101BDO\ type bigWig\ visibility full\ FibroblastLymphaticDonor3_CNhs12118_ctss_fwd FibroLymphaticD3+ bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward 0 2379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor3_CNhs12118_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_tpm_fwd FibroLymphaticD3+ bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward 1 2379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastLymphaticDonor3_CNhs12118_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF033DVS ENCSR267NVP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA ESRRA peaks 4 2380 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/e120cfdb-20da-45ce-8caf-6c6718945024/ENCFF033DVS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA ESRRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR267NVP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF033DVS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF144TAZ ENCSR306BHE Peak bigBed 5 RWPE2 DNase peak 4 2380 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f2f8eb01-7d43-4e4a-87e9-a0f7ec983320/ENCFF144TAZ.bigBed\ color 6,218,147\ labelFields none\ longLabel RWPE2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR306BHE Peak\ track wgEncodeReg4Epigenetics_ENCFF144TAZ\ type bigBed 5\ visibility squish\ FibroblastLymphaticDonor3_CNhs12118_ctss_rev FibroLymphaticD3- bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse 0 2380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor3_CNhs12118_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ FibroblastLymphaticDonor3_CNhs12118_tpm_rev FibroLymphaticD3- bigWig Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse 1 2380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Lymphatic%2c%20donor3.CNhs12118.11667-122G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Lymphatic, donor3_CNhs12118_11667-122G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11667-122G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroLymphaticD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastLymphaticDonor3_CNhs12118_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11667-122G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF811AXA ENCSR267NVP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA ESRRA ENCSR267NVP signal 2 2381 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/301f4c5d-5902-483d-af78-356314986779/ENCFF811AXA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA ESRRA ENCSR267NVP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR267NVP Signal\ track wgEncodeReg4TfChip_ENCFF811AXA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF060GSU ENCSR306BHE Signal bigWig RWPE2 DNase signal 2 2381 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7b34cbc2-81f3-468e-a990-c246cf95a2d3/ENCFF060GSU.bigWig\ color 6,218,147\ longLabel RWPE2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR306BHE Signal\ track wgEncodeReg4Epigenetics_ENCFF060GSU\ type bigWig\ visibility full\ FibroblastMammaryDonor1_CNhs11348_ctss_fwd FibroMammaryD1+ bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward 0 2381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor1_CNhs11348_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_tpm_fwd FibroMammaryD1+ bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward 1 2381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor1_CNhs11348_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF031SIK ENCSR268QIQ Peak bigBed 5 K562 SRSF3 peaks 4 2382 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/3210c76b-f023-41f2-8513-b83a72a033cf/ENCFF031SIK.bigBed\ labelFields none\ longLabel K562 SRSF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR268QIQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF031SIK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF265XIN ENCSR306LNA Peak bigBed 5 Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 73 years DNase peak 4 2382 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/f3d1865b-8c34-4412-9da3-aa70f547bfcd/ENCFF265XIN.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 73 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR306LNA Peak\ track wgEncodeReg4Epigenetics_ENCFF265XIN\ type bigBed 5\ visibility squish\ FibroblastMammaryDonor1_CNhs11348_ctss_rev FibroMammaryD1- bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse 0 2382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor1_CNhs11348_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor1_CNhs11348_tpm_rev FibroMammaryD1- bigWig Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse 1 2382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor1.CNhs11348.11540-120B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor1_CNhs11348_11540-120B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11540-120B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor1_CNhs11348_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11540-120B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF201YMB ENCSR268QIQ Signal bigWig K562 SRSF3 ENCSR268QIQ signal 2 2383 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e32f960c-6795-4d15-b7c7-eb77d589e266/ENCFF201YMB.bigWig\ color 254,75,173\ longLabel K562 SRSF3 ENCSR268QIQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR268QIQ Signal\ track wgEncodeReg4TfChip_ENCFF201YMB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF737EDS ENCSR306LNA Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 73 years DNase signal 2 2383 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/37b774e1-0297-4796-9c44-a9d39f63ac28/ENCFF737EDS.bigWig\ color 6,218,147\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 73 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR306LNA Signal\ track wgEncodeReg4Epigenetics_ENCFF737EDS\ type bigWig\ visibility full\ FibroblastMammaryDonor2_CNhs12103_ctss_fwd FibroMammaryD2+ bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward 0 2383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor2_CNhs12103_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_tpm_fwd FibroMammaryD2+ bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward 1 2383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor2_CNhs12103_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF802XCI ENCSR268XPQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF12 TCF12 peaks 4 2384 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/a6a84920-962e-4ae3-ace2-e8a56108e46d/ENCFF802XCI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF12 TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR268XPQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF802XCI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF185NYD ENCSR306WYL Peak bigBed 5 Endothelial cell H3K4me3 peak 4 2384 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/05fd9d02-32d1-45c7-bb5c-9f402aae7a9e/ENCFF185NYD.bigBed\ color 255,0,0\ longLabel Endothelial cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR306WYL Peak\ track wgEncodeReg4Epigenetics_ENCFF185NYD\ type bigBed 5\ visibility squish\ FibroblastMammaryDonor2_CNhs12103_ctss_rev FibroMammaryD2- bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse 0 2384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor2_CNhs12103_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor2_CNhs12103_tpm_rev FibroMammaryD2- bigWig Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse 1 2384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor2.CNhs12103.11620-122A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor2_CNhs12103_11620-122A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11620-122A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor2_CNhs12103_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11620-122A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF813MZE ENCSR268XPQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF12 TCF12 ENCSR268XPQ signal 2 2385 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/c619c30e-5612-462b-ad13-4aaf099bbf95/ENCFF813MZE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF12 TCF12 ENCSR268XPQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR268XPQ Signal\ track wgEncodeReg4TfChip_ENCFF813MZE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF543KTX ENCSR306WYL Signal bigWig Endothelial cell H3K4me3 signal 2 2385 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a4dbf5c6-6def-47cf-af65-f1884f69fbd0/ENCFF543KTX.bigWig\ color 255,0,0\ longLabel Endothelial cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR306WYL Signal\ track wgEncodeReg4Epigenetics_ENCFF543KTX\ type bigWig\ visibility full\ FibroblastMammaryDonor3_CNhs12128_ctss_fwd FibroMammaryD3+ bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward 0 2385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor3_CNhs12128_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_tpm_fwd FibroMammaryD3+ bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward 1 2385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastMammaryDonor3_CNhs12128_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF143ZBX ENCSR269DQN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED13 MED13 peaks 4 2386 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/ca80f49a-f319-4e1b-9d1e-56d442b72640/ENCFF143ZBX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED13 MED13 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR269DQN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF143ZBX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF916WMY ENCSR307DQT Peak bigBed 5 SU-DHL-6 H3K27ac peak 4 2386 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2fcf1f67-a9c2-4a01-9708-7f42c8ab83c4/ENCFF916WMY.bigBed\ color 181,145,0\ longLabel SU-DHL-6 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR307DQT Peak\ track wgEncodeReg4Epigenetics_ENCFF916WMY\ type bigBed 5\ visibility squish\ FibroblastMammaryDonor3_CNhs12128_ctss_rev FibroMammaryD3- bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse 0 2386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroMammaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor3_CNhs12128_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ FibroblastMammaryDonor3_CNhs12128_tpm_rev FibroMammaryD3- bigWig Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse 1 2386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Mammary%2c%20donor3.CNhs12128.11701-123A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Mammary, donor3_CNhs12128_11701-123A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11701-123A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroMammaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastMammaryDonor3_CNhs12128_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11701-123A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF984TJX ENCSR269DQN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED13 MED13 ENCSR269DQN signal 2 2387 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/8aac7834-03f5-462e-955c-ad421dd0ec9d/ENCFF984TJX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED13 MED13 ENCSR269DQN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR269DQN Signal\ track wgEncodeReg4TfChip_ENCFF984TJX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF135ZDR ENCSR307DQT Signal bigWig SU-DHL-6 H3K27ac signal 2 2387 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/733f2011-0dae-4376-8114-c289e108fd0d/ENCFF135ZDR.bigWig\ color 181,145,0\ longLabel SU-DHL-6 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR307DQT Signal\ track wgEncodeReg4Epigenetics_ENCFF135ZDR\ type bigWig\ visibility full\ FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_fwd FibroPeriodontalLigamentD1+ bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward 0 2387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_fwd FibroPeriodontalLigamentD1+ bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward 1 2387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF033EIH ENCSR269MEF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB44 ZBTB44 peaks 4 2388 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/d211dbe0-7186-4df8-a8d1-cb57b9629802/ENCFF033EIH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB44 ZBTB44 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR269MEF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF033EIH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF482YBU ENCSR308HPZ Peak bigBed 5 Gastrocnemius medialis tissue male adult 54 years ATAC peak 4 2388 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/92f1d068-9e32-4b56-97c5-338241302169/ENCFF482YBU.bigBed\ color 2,199,185\ longLabel Gastrocnemius medialis tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR308HPZ Peak\ track wgEncodeReg4Epigenetics_ENCFF482YBU\ type bigBed 5\ visibility squish\ FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_rev FibroPeriodontalLigamentD1- bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse 0 2388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_rev FibroPeriodontalLigamentD1- bigWig Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse 1 2388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor1.CNhs10867.11238-116D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor1_CNhs10867_11238-116D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11238-116D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor1_CNhs10867_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11238-116D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF419UEZ ENCSR269MEF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB44 ZBTB44 ENCSR269MEF signal 2 2389 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/ab8dd1a6-1fc8-4bda-9e6d-68149b46fa02/ENCFF419UEZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB44 ZBTB44 ENCSR269MEF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR269MEF Signal\ track wgEncodeReg4TfChip_ENCFF419UEZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF163JWV ENCSR308HPZ Signal bigWig Gastrocnemius medialis tissue male adult 54 years ATAC signal 2 2389 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/9bcb14a2-123b-4882-b91c-15d3b75decb4/ENCFF163JWV.bigWig\ color 2,199,185\ longLabel Gastrocnemius medialis tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR308HPZ Signal\ track wgEncodeReg4Epigenetics_ENCFF163JWV\ type bigWig\ visibility full\ FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_fwd FibroPeriodontalLigamentD2+ bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward 0 2389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_fwd FibroPeriodontalLigamentD2+ bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward 1 2389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF180FFY ENCSR269TNX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA GABPA peaks 4 2390 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/fec4154a-6a9b-46cd-b2a3-bc36e18f9a5e/ENCFF180FFY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR269TNX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF180FFY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF584GIH ENCSR308ZMD Peak bigBed 5 Thymus tissue female embryo 110 days H3K4me3 peak 4 2390 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/7b7ec196-78e0-4fb3-adc2-203c50cd162d/ENCFF584GIH.bigBed\ color 255,0,0\ longLabel Thymus tissue female embryo 110 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR308ZMD Peak\ track wgEncodeReg4Epigenetics_ENCFF584GIH\ type bigBed 5\ visibility squish\ FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_rev FibroPeriodontalLigamentD2- bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse 0 2390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_rev FibroPeriodontalLigamentD2- bigWig Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse 1 2390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor2.CNhs11962.11319-117D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor2_CNhs11962_11319-117D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11319-117D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor2_CNhs11962_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11319-117D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF464QQK ENCSR269TNX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA GABPA ENCSR269TNX signal 2 2391 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/c1eb35b3-95ac-489c-9e11-2a8860b58da6/ENCFF464QQK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPA GABPA ENCSR269TNX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR269TNX Signal\ track wgEncodeReg4TfChip_ENCFF464QQK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF604OZO ENCSR308ZMD Signal bigWig Thymus tissue female embryo 110 days H3K4me3 signal 2 2391 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/a96a1dcc-921a-408a-8d52-be1078743058/ENCFF604OZO.bigWig\ color 255,0,0\ longLabel Thymus tissue female embryo 110 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR308ZMD Signal\ track wgEncodeReg4Epigenetics_ENCFF604OZO\ type bigWig\ visibility full\ FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_fwd FibroPeriodontalLigamentD3+ bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward 0 2391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_fwd FibroPeriodontalLigamentD3+ bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward 1 2391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF235CPK ENCSR270KFY Peak bigBed 5 Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 2392 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/f62cd238-914c-4d30-bae8-9e6c5834f633/ENCFF235CPK.bigBed\ labelFields none\ longLabel Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR270KFY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF235CPK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF484QGB ENCSR309FOO Peak bigBed 5 Brain tissue female embryo 117 days DNase peak 4 2392 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/3360ce68-200b-44c5-8ce3-280e87098747/ENCFF484QGB.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue female embryo 117 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR309FOO Peak\ track wgEncodeReg4Epigenetics_ENCFF484QGB\ type bigBed 5\ visibility squish\ FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_rev FibroPeriodontalLigamentD3- bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse 0 2392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_rev FibroPeriodontalLigamentD3- bigWig Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse 1 2392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor3.CNhs11907.11395-118C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor3_CNhs11907_11395-118C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11395-118C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor3_CNhs11907_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11395-118C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF258OMT ENCSR270KFY Signal bigWig Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR270KFY signal 2 2393 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/d8fa7e71-1880-40b0-903c-9b2c9e679aa2/ENCFF258OMT.bigWig\ color 155,155,18\ longLabel Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR270KFY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR270KFY Signal\ track wgEncodeReg4TfChip_ENCFF258OMT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF109KHT ENCSR309FOO Signal bigWig Brain tissue female embryo 117 days DNase signal 2 2393 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/f7992177-fb5c-47c0-8d0e-bcaa3b2ba522/ENCFF109KHT.bigWig\ color 6,218,147\ longLabel Brain tissue female embryo 117 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR309FOO Signal\ track wgEncodeReg4Epigenetics_ENCFF109KHT\ type bigWig\ visibility full\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_fwd FibroPeriodontalLigamentD4+ bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward 0 2393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_fwd FibroPeriodontalLigamentD4+ bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward 1 2393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF076TMZ ENCSR271XMW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300 EP300 peaks 4 2394 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/395b1087-5b06-412d-bf7b-16e68cd3d733/ENCFF076TMZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR271XMW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF076TMZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF816GWG ENCSR309UVT Peak bigBed 5 Thyroid gland tissue female adult 51 years H3K4me3 peak 4 2394 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/93fd8d01-7eb9-47d7-8fcb-4b08d6205a22/ENCFF816GWG.bigBed\ color 255,0,0\ longLabel Thyroid gland tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR309UVT Peak\ track wgEncodeReg4Epigenetics_ENCFF816GWG\ type bigBed 5\ visibility squish\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_rev FibroPeriodontalLigamentD4- bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse 0 2394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_rev FibroPeriodontalLigamentD4- bigWig Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse 1 2394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor4%20%28PL29%29.CNhs12493.11223-116B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor4 (PL29)_CNhs12493_11223-116B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11223-116B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor4PL29_CNhs12493_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11223-116B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF760WAX ENCSR271XMW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300 EP300 ENCSR271XMW signal 2 2395 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/eff298d7-174b-4182-8f70-8f74f0a6d4ef/ENCFF760WAX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EP300 EP300 ENCSR271XMW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR271XMW Signal\ track wgEncodeReg4TfChip_ENCFF760WAX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF321LZL ENCSR309UVT Signal bigWig Thyroid gland tissue female adult 51 years H3K4me3 signal 2 2395 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/b4a3fde2-6f65-47d9-a434-9bbf9b040320/ENCFF321LZL.bigWig\ color 255,0,0\ longLabel Thyroid gland tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR309UVT Signal\ track wgEncodeReg4Epigenetics_ENCFF321LZL\ type bigWig\ visibility full\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_fwd FibroPeriodontalLigamentD5+ bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward 0 2395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_fwd FibroPeriodontalLigamentD5+ bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward 1 2395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF188CYP ENCSR272JAT Peak bigBed 5 K562 CBX5 peaks 4 2396 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/7bf4790e-ec31-4c4f-a169-09867aaa3e2d/ENCFF188CYP.bigBed\ labelFields none\ longLabel K562 CBX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR272JAT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF188CYP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF909GFE ENCSR309YDN Peak bigBed 5 Muscle of arm tissue female embryo 85 days DNase peak 4 2396 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/cb594bb2-8d0f-462d-b109-10aff6bc9223/ENCFF909GFE.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue female embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR309YDN Peak\ track wgEncodeReg4Epigenetics_ENCFF909GFE\ type bigBed 5\ visibility squish\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_rev FibroPeriodontalLigamentD5- bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_reverse 0 2396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_rev FibroPeriodontalLigamentD5- bigWig Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_reverse 1 2396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor5%20%28PL30%29.CNhs11953.11304-117B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor5 (PL30)_CNhs11953_11304-117B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11304-117B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor5PL30_CNhs11953_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11304-117B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF534HXX ENCSR272JAT Signal bigWig K562 CBX5 ENCSR272JAT signal 2 2397 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/7ecb502f-f83d-43d6-8e4e-db56ff50f603/ENCFF534HXX.bigWig\ color 254,75,173\ longLabel K562 CBX5 ENCSR272JAT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR272JAT Signal\ track wgEncodeReg4TfChip_ENCFF534HXX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF547CPF ENCSR309YDN Signal bigWig Muscle of arm tissue female embryo 85 days DNase signal 2 2397 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/739142fe-550b-467d-b8a4-b3e3825ebf75/ENCFF547CPF.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue female embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR309YDN Signal\ track wgEncodeReg4Epigenetics_ENCFF547CPF\ type bigWig\ visibility full\ FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_ctss_fwd FibroPeriodontalLigamentD6+ bigWig Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_forward 0 2397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_fwd FibroPeriodontalLigamentD6+ bigWig Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_forward 1 2397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF371CVH ENCSR272TOJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DLX6 DLX6 peaks 4 2398 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/0c5f3856-6a41-4aa7-a855-d8f68108e381/ENCFF371CVH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DLX6 DLX6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR272TOJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF371CVH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF035COG ENCSR310RJN Peak bigBed 5 Heart left ventricle tissue male adult 43 years ATAC peak 4 2398 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/68a68d68-7d57-41a8-a5dd-36b03afc77fd/ENCFF035COG.bigBed\ color 2,199,185\ longLabel Heart left ventricle tissue male adult 43 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR310RJN Peak\ track wgEncodeReg4Epigenetics_ENCFF035COG\ type bigBed 5\ visibility squish\ FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_ctss_rev FibroPeriodontalLigamentD6- bigWig Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse 0 2398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPeriodontalLigamentD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_rev FibroPeriodontalLigamentD6- bigWig Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse 1 2398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Periodontal%20Ligament%2c%20donor6%20%28PLH3%29.CNhs11996.11380-118B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Periodontal Ligament, donor6 (PLH3)_CNhs11996_11380-118B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11380-118B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPeriodontalLigamentD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPeriodontalLigamentDonor6PLH3_CNhs11996_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11380-118B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF831EQL ENCSR272TOJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DLX6 DLX6 ENCSR272TOJ signal 2 2399 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/2d654541-4414-40b1-95ce-c03bb84164cc/ENCFF831EQL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DLX6 DLX6 ENCSR272TOJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR272TOJ Signal\ track wgEncodeReg4TfChip_ENCFF831EQL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF875SZE ENCSR310RJN Signal bigWig Heart left ventricle tissue male adult 43 years ATAC signal 2 2399 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/33513b26-e562-4873-b8e6-c2d20da2ee60/ENCFF875SZE.bigWig\ color 2,199,185\ longLabel Heart left ventricle tissue male adult 43 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR310RJN Signal\ track wgEncodeReg4Epigenetics_ENCFF875SZE\ type bigWig\ visibility full\ FibroblastPulmonaryArteryDonor1_CNhs10878_ctss_fwd FibroPulmonaryArteryD1+ bigWig Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_forward 0 2399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Pulmonary%20Artery%2c%20donor1.CNhs10878.11250-116E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11250-116E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPulmonaryArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPulmonaryArteryDonor1_CNhs10878_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8\ urlLabel FANTOM5 Details:\ FibroblastPulmonaryArteryDonor1_CNhs10878_tpm_fwd FibroPulmonaryArteryD1+ bigWig Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_forward 1 2399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Pulmonary%20Artery%2c%20donor1.CNhs10878.11250-116E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11250-116E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPulmonaryArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastPulmonaryArteryDonor1_CNhs10878_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF669KMB ENCSR274SLQ Peak bigBed 5 SK-N-SH CHD2 peaks 4 2400 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/abe74d04-53aa-4800-8695-3dacf115c1db/ENCFF669KMB.bigBed\ labelFields none\ longLabel SK-N-SH CHD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR274SLQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF669KMB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF836SLB ENCSR310UDW Peak bigBed 5 Left cardiac atrium tissue male adult 40 years ATAC peak 4 2400 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/aa2a0228-bcd4-4d09-bb4d-960826e287ef/ENCFF836SLB.bigBed\ color 2,199,185\ longLabel Left cardiac atrium tissue male adult 40 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR310UDW Peak\ track wgEncodeReg4Epigenetics_ENCFF836SLB\ type bigBed 5\ visibility squish\ FibroblastPulmonaryArteryDonor1_CNhs10878_ctss_rev FibroPulmonaryArteryD1- bigWig Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse 0 2400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Pulmonary%20Artery%2c%20donor1.CNhs10878.11250-116E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11250-116E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroPulmonaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPulmonaryArteryDonor1_CNhs10878_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8\ urlLabel FANTOM5 Details:\ FibroblastPulmonaryArteryDonor1_CNhs10878_tpm_rev FibroPulmonaryArteryD1- bigWig Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse 1 2400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Pulmonary%20Artery%2c%20donor1.CNhs10878.11250-116E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Pulmonary Artery, donor1_CNhs10878_11250-116E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11250-116E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroPulmonaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastPulmonaryArteryDonor1_CNhs10878_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11250-116E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF692PLM ENCSR274SLQ Signal bigWig SK-N-SH CHD2 ENCSR274SLQ signal 2 2401 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3795e1d1-0377-41fc-beb3-934ab12f1abf/ENCFF692PLM.bigWig\ color 155,155,18\ longLabel SK-N-SH CHD2 ENCSR274SLQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR274SLQ Signal\ track wgEncodeReg4TfChip_ENCFF692PLM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF618FTE ENCSR310UDW Signal bigWig Left cardiac atrium tissue male adult 40 years ATAC signal 2 2401 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/a1bdc559-ddef-4b54-bc53-3266dcc89a5c/ENCFF618FTE.bigWig\ color 2,199,185\ longLabel Left cardiac atrium tissue male adult 40 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR310UDW Signal\ track wgEncodeReg4Epigenetics_ENCFF618FTE\ type bigWig\ visibility full\ FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_ctss_fwd FibroSkinDystrophiaMyotonicaNucfracD1+ bigWig Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_forward 0 2401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1.CNhs11353.11556-120C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11556-120C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_tpm_fwd FibroSkinDystrophiaMyotonicaNucfracD1+ bigWig Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_forward 1 2401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1.CNhs11353.11556-120C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11556-120C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF361BGF ENCSR277BXW Peak bigBed 5 MCF-7 ZBTB7B peaks 4 2402 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/100275df-4ba5-46ce-a072-b38edfe21912/ENCFF361BGF.bigBed\ labelFields none\ longLabel MCF-7 ZBTB7B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277BXW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF361BGF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF881BBV ENCSR310ZGQ Peak bigBed 5 T-cell male adult 26 years DNase peak 4 2402 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e6cba961-4a54-4867-bc14-7d72672df8e4/ENCFF881BBV.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 26 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR310ZGQ Peak\ track wgEncodeReg4Epigenetics_ENCFF881BBV\ type bigBed 5\ visibility squish\ FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD1- bigWig Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse 0 2402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1.CNhs11353.11556-120C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11556-120C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD1- bigWig Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse 1 2402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1.CNhs11353.11556-120C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor1_CNhs11353_11556-120C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11556-120C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor1_CNhs11353_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11556-120C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF831RLV ENCSR277BXW Signal bigWig MCF-7 ZBTB7B ENCSR277BXW signal 2 2403 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/0313460d-6287-465d-b43d-8ba69963b4d4/ENCFF831RLV.bigWig\ color 65,171,173\ longLabel MCF-7 ZBTB7B ENCSR277BXW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277BXW Signal\ track wgEncodeReg4TfChip_ENCFF831RLV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF647HQN ENCSR310ZGQ Signal bigWig T-cell male adult 26 years DNase signal 2 2403 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/a3e60e40-83e2-4013-848c-39cebfc8140f/ENCFF647HQN.bigWig\ color 6,218,147\ longLabel T-cell male adult 26 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR310ZGQ Signal\ track wgEncodeReg4Epigenetics_ENCFF647HQN\ type bigWig\ visibility full\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_fwd FibroSkinDystrophiaMyotonicaNucfracD2+ bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward 0 2403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_fwd FibroSkinDystrophiaMyotonicaNucfracD2+ bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward 1 2403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF389WTI ENCSR277DMR Peak bigBed 5 K562 stably expressing ETV1 ETV1 peaks 4 2404 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/784f5c2a-1e27-4950-95d3-d24155d47296/ENCFF389WTI.bigBed\ labelFields none\ longLabel K562 stably expressing ETV1 ETV1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277DMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF389WTI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF870HPB ENCSR311EEL Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 2404 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/00557ffd-2ac2-49d1-ad95-d379a76515f6/ENCFF870HPB.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR311EEL Peak\ track wgEncodeReg4Epigenetics_ENCFF870HPB\ type bigBed 5\ visibility squish\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD2- bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse 0 2404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD2- bigWig Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse 1 2404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor2.CNhs11354.11557-120C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor2_CNhs11354_11557-120C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11557-120C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor2_CNhs11354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11557-120C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF753YBQ ENCSR277DMR Signal bigWig K562 stably expressing ETV1 ETV1 ENCSR277DMR signal 2 2405 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/b9ccc32b-c38f-48e5-93b3-adc017f39c7a/ENCFF753YBQ.bigWig\ color 254,75,173\ longLabel K562 stably expressing ETV1 ETV1 ENCSR277DMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277DMR Signal\ track wgEncodeReg4TfChip_ENCFF753YBQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF013QGD ENCSR311EEL Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2405 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/fc167ee5-f1e6-4419-beba-965ac820a3c4/ENCFF013QGD.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR311EEL Signal\ track wgEncodeReg4Epigenetics_ENCFF013QGD\ type bigWig\ visibility full\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_fwd FibroSkinDystrophiaMyotonicaNucfracD3+ bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward 0 2405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_fwd FibroSkinDystrophiaMyotonicaNucfracD3+ bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward 1 2405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF640AQE ENCSR277OOQ Peak bigBed 5 A549 ZC3H11A peaks 4 2406 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/069d6d42-11ad-4600-a6c8-cbc0e38fa344/ENCFF640AQE.bigBed\ labelFields none\ longLabel A549 ZC3H11A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277OOQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF640AQE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF544SJN ENCSR311LLZ Peak bigBed 5 Heart tissue male embryo 110 days DNase peak 4 2406 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/4f7b1361-2245-4c2e-94a9-fcc8c3743ab2/ENCFF544SJN.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue male embryo 110 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR311LLZ Peak\ track wgEncodeReg4Epigenetics_ENCFF544SJN\ type bigBed 5\ visibility squish\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_rev FibroSkinDystrophiaMyotonicaNucfracD3- bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse 0 2406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_rev FibroSkinDystrophiaMyotonicaNucfracD3- bigWig Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse 1 2406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3.CNhs11913.11560-120D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin dystrophia myotonica, donor3_CNhs11913_11560-120D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11560-120D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinDystrophiaMyotonicaNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinDystrophiaMyotonicaDonor3_CNhs11913_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11560-120D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF530HFJ ENCSR277OOQ Signal bigWig A549 ZC3H11A ENCSR277OOQ signal 2 2407 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/fbb04e76-50c6-498f-930c-80bc97c4176e/ENCFF530HFJ.bigWig\ color 130,163,45\ longLabel A549 ZC3H11A ENCSR277OOQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277OOQ Signal\ track wgEncodeReg4TfChip_ENCFF530HFJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF429LHD ENCSR311LLZ Signal bigWig Heart tissue male embryo 110 days DNase signal 2 2407 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/484aebb4-3555-464c-8b5f-da264b64b06d/ENCFF429LHD.bigWig\ color 6,218,147\ longLabel Heart tissue male embryo 110 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR311LLZ Signal\ track wgEncodeReg4Epigenetics_ENCFF429LHD\ type bigWig\ visibility full\ FibroblastSkinNormalDonor1_CNhs11351_ctss_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward 0 2407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor1_CNhs11351_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_tpm_fwd FibroSkinNormalNucfracD1+ bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward 1 2407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor1_CNhs11351_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF713QUJ ENCSR277VXX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608 ZNF608 peaks 4 2408 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/c59e68a2-c91d-422b-95b2-66a1b44a002f/ENCFF713QUJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608 ZNF608 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277VXX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF713QUJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF835LKG ENCSR312HLG Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak 4 2408 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/8fefb13a-df0d-46b1-a4b9-0656c455b3b2/ENCFF835LKG.bigBed\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR312HLG Peak\ track wgEncodeReg4Epigenetics_ENCFF835LKG\ type bigBed 5\ visibility squish\ FibroblastSkinNormalDonor1_CNhs11351_ctss_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse 0 2408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor1_CNhs11351_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor1_CNhs11351_tpm_rev FibroSkinNormalNucfracD1- bigWig Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse 1 2408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor1.CNhs11351.11553-120C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor1_CNhs11351_11553-120C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11553-120C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor1_CNhs11351_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11553-120C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF277UWB ENCSR277VXX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608 ZNF608 ENCSR277VXX signal 2 2409 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/d4f2c0b3-3bac-4be9-8487-c30c73a60740/ENCFF277UWB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608 ZNF608 ENCSR277VXX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR277VXX Signal\ track wgEncodeReg4TfChip_ENCFF277UWB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF579WQH ENCSR312HLG Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal 2 2409 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/1df4cdca-41d1-41c1-ab4c-208a92519b9a/ENCFF579WQH.bigWig\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR312HLG Signal\ track wgEncodeReg4Epigenetics_ENCFF579WQH\ type bigWig\ visibility full\ FibroblastSkinNormalDonor2_CNhs11914_ctss_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward 0 2409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor2_CNhs11914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_tpm_fwd FibroSkinNormalNucfracD2+ bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward 1 2409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinNormalDonor2_CNhs11914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF213ZNN ENCSR278SQL Peak bigBed 5 GM12878 NBN peaks 4 2410 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/34f571e9-e143-42d3-99af-88eefdadb56f/ENCFF213ZNN.bigBed\ labelFields none\ longLabel GM12878 NBN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR278SQL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF213ZNN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF456YIH ENCSR312INU Peak bigBed 5 Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak 4 2410 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/b32a91e9-2609-4a4a-9271-e53d042824e2/ENCFF456YIH.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR312INU Peak\ track wgEncodeReg4Epigenetics_ENCFF456YIH\ type bigBed 5\ visibility squish\ FibroblastSkinNormalDonor2_CNhs11914_ctss_rev FibroSkinNormalNucfracD2- bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse 0 2410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinNormalNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor2_CNhs11914_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ FibroblastSkinNormalDonor2_CNhs11914_tpm_rev FibroSkinNormalNucfracD2- bigWig Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse 1 2410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20normal%2c%20donor2.CNhs11914.11561-120D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin normal, donor2_CNhs11914_11561-120D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11561-120D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinNormalNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinNormalDonor2_CNhs11914_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11561-120D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF995DXI ENCSR278SQL Signal bigWig GM12878 NBN ENCSR278SQL signal 2 2411 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/fef96854-cf23-46a6-9850-c860929d26eb/ENCFF995DXI.bigWig\ color 254,75,173\ longLabel GM12878 NBN ENCSR278SQL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR278SQL Signal\ track wgEncodeReg4TfChip_ENCFF995DXI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF142QXQ ENCSR312INU Signal bigWig Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal 2 2411 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/37790aea-43de-4957-b3ca-81e64d15f9b8/ENCFF142QXQ.bigWig\ color 6,218,147\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR312INU Signal\ track wgEncodeReg4Epigenetics_ENCFF142QXQ\ type bigWig\ visibility full\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward 0 2411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD1+ bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward 1 2411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF220HCQ ENCSR279KDC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF677 ZNF677 peaks 4 2412 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/31/dfae4d8c-ec6d-43fd-aa3f-247afa0fa4ee/ENCFF220HCQ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF677 ZNF677 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR279KDC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF220HCQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF580BDS ENCSR312UCH Peak bigBed 5 GM18519 ATAC peak 4 2412 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/c5ac101b-279e-4efc-85df-d709a5a74525/ENCFF580BDS.bigBed\ color 2,199,185\ longLabel GM18519 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR312UCH Peak\ track wgEncodeReg4Epigenetics_ENCFF580BDS\ type bigBed 5\ visibility squish\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse 0 2412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD1- bigWig Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse 1 2412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1.CNhs11074.11555-120C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor1_CNhs11074_11555-120C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11555-120C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor1_CNhs11074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11555-120C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF249UAQ ENCSR279KDC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF677 ZNF677 ENCSR279KDC signal 2 2413 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/31/1e900108-5bc0-4cd3-b219-8e37450d6474/ENCFF249UAQ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF677 ZNF677 ENCSR279KDC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR279KDC Signal\ track wgEncodeReg4TfChip_ENCFF249UAQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF099HUE ENCSR312UCH Signal bigWig GM18519 ATAC signal 2 2413 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/9697cb57-ff1f-472d-82a6-ca2c66320a2a/ENCFF099HUE.bigWig\ color 2,199,185\ longLabel GM18519 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR312UCH Signal\ track wgEncodeReg4Epigenetics_ENCFF099HUE\ type bigWig\ visibility full\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD2+ bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward 0 2413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD2+ bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward 1 2413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF478OVI ENCSR279NEA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8 AKAP8 peaks 4 2414 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/07c78815-0985-440c-bc8b-bf19f3001d2f/ENCFF478OVI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8 AKAP8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR279NEA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF478OVI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF011IHJ ENCSR313CEH Peak bigBed 5 Lower lobe of left lung tissue female adult 59 years H3K27ac peak 4 2414 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/4e9dda35-c1a6-4538-b4ea-4a2eceb03d2d/ENCFF011IHJ.bigBed\ color 181,145,0\ longLabel Lower lobe of left lung tissue female adult 59 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR313CEH Peak\ track wgEncodeReg4Epigenetics_ENCFF011IHJ\ type bigBed 5\ visibility squish\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD2- bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse 0 2414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD2- bigWig Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse 1 2414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor2.CNhs11911.11558-120D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor2_CNhs11911_11558-120D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11558-120D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor2_CNhs11911_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11558-120D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF379DQR ENCSR279NEA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8 AKAP8 ENCSR279NEA signal 2 2415 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/df7abb84-0ff9-45e8-890f-909aa3657c9b/ENCFF379DQR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKAP8 AKAP8 ENCSR279NEA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR279NEA Signal\ track wgEncodeReg4TfChip_ENCFF379DQR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF375YPQ ENCSR313CEH Signal bigWig Lower lobe of left lung tissue female adult 59 years H3K27ac signal 2 2415 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/49d191a6-b8ad-4a57-8e34-d1b9ad8cf180/ENCFF375YPQ.bigWig\ color 181,145,0\ longLabel Lower lobe of left lung tissue female adult 59 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR313CEH Signal\ track wgEncodeReg4Epigenetics_ENCFF375YPQ\ type bigWig\ visibility full\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward 0 2415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_fwd FibroSkinSpinalMuscularAtrophyNucfracD3+ bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward 1 2415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF455PLI ENCSR280SCF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM4B KDM4B peaks 4 2416 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/f9f086a0-4b09-4073-885a-359e76c25b1d/ENCFF455PLI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM4B KDM4B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR280SCF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF455PLI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF466VOJ ENCSR313IJX Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 88 years H3K4me3 peak 4 2416 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/2fbb9583-fdd0-4679-99eb-abcfc639bb4a/ENCFF466VOJ.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 88 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR313IJX Peak\ track wgEncodeReg4Epigenetics_ENCFF466VOJ\ type bigBed 5\ visibility squish\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse 0 2416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_rev FibroSkinSpinalMuscularAtrophyNucfracD3- bigWig Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse 1 2416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3.CNhs11912.11559-120D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin spinal muscular atrophy, donor3_CNhs11912_11559-120D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11559-120D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinSpinalMuscularAtrophyNucfracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinSpinalMuscularAtrophyDonor3_CNhs11912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11559-120D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF354HCN ENCSR280SCF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM4B KDM4B ENCSR280SCF signal 2 2417 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/1c3dfbcb-ffbc-4f9e-b61e-b3fdc4c03f8a/ENCFF354HCN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM4B KDM4B ENCSR280SCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR280SCF Signal\ track wgEncodeReg4TfChip_ENCFF354HCN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF018QTQ ENCSR313IJX Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 88 years H3K4me3 signal 2 2417 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/14ead26d-5ffa-495e-8e69-98b5c003ad7e/ENCFF018QTQ.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 88 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR313IJX Signal\ track wgEncodeReg4Epigenetics_ENCFF018QTQ\ type bigWig\ visibility full\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_fwd FibroSkinWalkerWarburgD1+ bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward 0 2417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinWalkerWarburgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_fwd FibroSkinWalkerWarburgD1+ bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward 1 2417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinWalkerWarburgD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF255XXZ ENCSR281VWZ Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I peaks 4 2418 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/06/15282f63-9b83-41f8-8f84-2533b1da5da6/ENCFF255XXZ.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR281VWZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF255XXZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF813GBK ENCSR313SEO Peak bigBed 5 Chorionic villus tissue embryo 16 weeks H3K4me3 peak 4 2418 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8650ed9c-8d43-46c2-9b05-592e793add1c/ENCFF813GBK.bigBed\ color 255,0,0\ longLabel Chorionic villus tissue embryo 16 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR313SEO Peak\ track wgEncodeReg4Epigenetics_ENCFF813GBK\ type bigBed 5\ visibility squish\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_rev FibroSkinWalkerWarburgD1- bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse 0 2418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroSkinWalkerWarburgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_rev FibroSkinWalkerWarburgD1- bigWig Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse 1 2418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20skin%20walker%20warburg%2c%20donor1.CNhs11352.11554-120C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - skin walker warburg, donor1_CNhs11352_11554-120C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11554-120C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroSkinWalkerWarburgD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastSkinWalkerWarburgDonor1_CNhs11352_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11554-120C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF656XZC ENCSR281VWZ Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I ENCSR281VWZ signal 2 2419 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/06/033e3ef2-b2ac-4778-9117-fda6576db076/ENCFF656XZC.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I ENCSR281VWZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR281VWZ Signal\ track wgEncodeReg4TfChip_ENCFF656XZC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF899GWP ENCSR313SEO Signal bigWig Chorionic villus tissue embryo 16 weeks H3K4me3 signal 2 2419 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/19608afe-b4fa-463c-8e59-70c14a57a710/ENCFF899GWP.bigWig\ color 255,0,0\ longLabel Chorionic villus tissue embryo 16 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR313SEO Signal\ track wgEncodeReg4Epigenetics_ENCFF899GWP\ type bigWig\ visibility full\ FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_fwd FibroVillousMesenchymalD1+ bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward 0 2419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_fwd FibroVillousMesenchymalD1+ bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward 1 2419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF182EBB ENCSR282NLQ Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TSHZ2 treated with 6 μM all-trans-retinoic acid for 48 hours TSHZ2 peaks 4 2420 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/aca3aad6-2062-4c6b-9a66-6374b73cf35b/ENCFF182EBB.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TSHZ2 treated with 6 μM all-trans-retinoic acid for 48 hours TSHZ2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR282NLQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF182EBB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF263TBG ENCSR314BEX Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K27ac peak 4 2420 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/2a77f60a-0d1d-4c2b-be56-3190be76f5a1/ENCFF263TBG.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314BEX Peak\ track wgEncodeReg4Epigenetics_ENCFF263TBG\ type bigBed 5\ visibility squish\ FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_rev FibroVillousMesenchymalD1- bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse 0 2420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor1_CNhs11343_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_rev FibroVillousMesenchymalD1- bigWig Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse 1 2420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor1.CNhs11343.11535-120A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor1_CNhs11343_11535-120A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11535-120A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor1_CNhs11343_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11535-120A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF481STJ ENCSR282NLQ Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TSHZ2 treated with 6 μM all-trans-retinoic acid for 48 hours TSHZ2 ENCSR282NLQ signal 2 2421 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/cc69f0c7-cc26-422c-896b-b310dff6fff6/ENCFF481STJ.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens TSHZ2 treated with 6 μM all-trans-retinoic acid for 48 hours TSHZ2 ENCSR282NLQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR282NLQ Signal\ track wgEncodeReg4TfChip_ENCFF481STJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF373LYP ENCSR314BEX Signal bigWig CD4-positive, alpha-beta memory T cell H3K27ac signal 2 2421 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/f6ad610a-6a76-4161-83d7-9f659c6ab10f/ENCFF373LYP.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314BEX Signal\ track wgEncodeReg4Epigenetics_ENCFF373LYP\ type bigWig\ visibility full\ FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_fwd FibroVillousMesenchymalD2+ bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward 0 2421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_fwd FibroVillousMesenchymalD2+ bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward 1 2421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF282RUS ENCSR283DOU Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF660 ZNF660 peaks 4 2422 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/3adc8f93-9a13-4bcf-a100-f17fdbae10c0/ENCFF282RUS.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF660 ZNF660 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR283DOU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF282RUS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF184KIU ENCSR314EDO Peak bigBed 5 K562 treated with 10 nM Panobinostat for 24 hours ATAC peak 4 2422 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/f1566ac9-2b67-4419-80ca-2df32c143ffa/ENCFF184KIU.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Panobinostat for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314EDO Peak\ track wgEncodeReg4Epigenetics_ENCFF184KIU\ type bigBed 5\ visibility squish\ FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_rev FibroVillousMesenchymalD2- bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse 0 2422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor2_CNhs12099_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_rev FibroVillousMesenchymalD2- bigWig Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse 1 2422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor2.CNhs12099.11615-122A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor2_CNhs12099_11615-122A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11615-122A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor2_CNhs12099_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11615-122A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF388TYS ENCSR283DOU Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF660 ZNF660 ENCSR283DOU signal 2 2423 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ae1df755-fe89-419e-976c-e72e5609b84b/ENCFF388TYS.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF660 ZNF660 ENCSR283DOU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR283DOU Signal\ track wgEncodeReg4TfChip_ENCFF388TYS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF786XOK ENCSR314EDO Signal bigWig K562 treated with 10 nM Panobinostat for 24 hours ATAC signal 2 2423 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/658dc35b-72e2-44b0-ba85-7e5e0b737056/ENCFF786XOK.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Panobinostat for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314EDO Signal\ track wgEncodeReg4Epigenetics_ENCFF786XOK\ type bigWig\ visibility full\ FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_fwd FibroVillousMesenchymalD3+ bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward 0 2423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_fwd FibroVillousMesenchymalD3+ bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward 1 2423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF844RST ENCSR283MWQ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF133 ZNF133 peaks 4 2424 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f2851236-b942-4ced-8625-7abc76713aa6/ENCFF844RST.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF133 ZNF133 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR283MWQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF844RST\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF876WSX ENCSR314EZY Peak bigBed 5 L1-S8 DNase peak 4 2424 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9cf4a572-684d-4555-93da-e6d885409e47/ENCFF876WSX.bigBed\ color 6,218,147\ labelFields none\ longLabel L1-S8 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314EZY Peak\ track wgEncodeReg4Epigenetics_ENCFF876WSX\ type bigBed 5\ visibility squish\ FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_rev FibroVillousMesenchymalD3- bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse 0 2424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FibroVillousMesenchymalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor3_CNhs12920_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_rev FibroVillousMesenchymalD3- bigWig Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse 1 2424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fibroblast%20-%20Villous%20Mesenchymal%2c%20donor3.CNhs12920.11696-123A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fibroblast - Villous Mesenchymal, donor3_CNhs12920_11696-123A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11696-123A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FibroVillousMesenchymalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track FibroblastVillousMesenchymalDonor3_CNhs12920_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11696-123A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF171WDP ENCSR283MWQ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF133 ZNF133 ENCSR283MWQ signal 2 2425 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/cde9e892-7da2-4e9a-b56d-865e3ac91faa/ENCFF171WDP.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF133 ZNF133 ENCSR283MWQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR283MWQ Signal\ track wgEncodeReg4TfChip_ENCFF171WDP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF448WTR ENCSR314EZY Signal bigWig L1-S8 DNase signal 2 2425 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9c38a23d-bdd8-4a34-8644-938b2f160114/ENCFF448WTR.bigWig\ color 6,218,147\ longLabel L1-S8 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314EZY Signal\ track wgEncodeReg4Epigenetics_ENCFF448WTR\ type bigWig\ visibility full\ GammaDeltaPositiveTCellsDonor1_CNhs13914_ctss_fwd GammaDeltaTcellsD1+ bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward 0 2425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor1.CNhs13914.11937-126A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11937-126A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GammaDeltaTcellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GammaDeltaPositiveTCellsDonor1_CNhs13914_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_fwd GammaDeltaTcellsD1+ bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward 1 2425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor1.CNhs13914.11937-126A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gamma delta positive T cells, donor1_CNhs13914_11937-126A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11937-126A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GammaDeltaTcellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF047BLG ENCSR283ZRI Peak bigBed 5 K562 POLR2G peaks 4 2426 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/38f38e14-9040-43c3-baf1-8bfe634e0f2b/ENCFF047BLG.bigBed\ labelFields none\ longLabel K562 POLR2G peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR283ZRI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF047BLG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF110CHF ENCSR314IBN Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour DNase peak 4 2426 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/87afca93-2e2b-4a59-864a-eb4d49ba69c3/ENCFF110CHF.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314IBN Peak\ track wgEncodeReg4Epigenetics_ENCFF110CHF\ type bigBed 5\ visibility squish\ GammaDeltaPositiveTCellsDonor1_CNhs13914_ctss_rev GammaDeltaTcellsD1- bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_reverse 0 2426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor1.CNhs13914.11937-126A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gamma delta positive T cells, donor1_CNhs13914_11937-126A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11937-126A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GammaDeltaTcellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GammaDeltaPositiveTCellsDonor1_CNhs13914_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_rev GammaDeltaTcellsD1- bigWig gamma delta positive T cells, donor1_CNhs13914_11937-126A2_reverse 1 2426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor1.CNhs13914.11937-126A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gamma delta positive T cells, donor1_CNhs13914_11937-126A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11937-126A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GammaDeltaTcellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GammaDeltaPositiveTCellsDonor1_CNhs13914_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11937-126A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF923SQO ENCSR283ZRI Signal bigWig K562 POLR2G ENCSR283ZRI signal 2 2427 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/0200c623-6f96-4939-b911-a2cf8b8d8f18/ENCFF923SQO.bigWig\ color 254,75,173\ longLabel K562 POLR2G ENCSR283ZRI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR283ZRI Signal\ track wgEncodeReg4TfChip_ENCFF923SQO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF278LCZ ENCSR314IBN Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour DNase signal 2 2427 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/54012b4b-6bd6-4683-acc1-8ffc8efbb60b/ENCFF278LCZ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314IBN Signal\ track wgEncodeReg4Epigenetics_ENCFF278LCZ\ type bigWig\ visibility full\ GammaDeltaPositiveTCellsDonor2_CNhs13915_ctss_fwd GammaDeltaTcellsD2+ bigWig gamma delta positive T cells, donor2_CNhs13915_11938-126A3_forward 0 2427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor2.CNhs13915.11938-126A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gamma delta positive T cells, donor2_CNhs13915_11938-126A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11938-126A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GammaDeltaTcellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GammaDeltaPositiveTCellsDonor2_CNhs13915_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor2_CNhs13915_tpm_fwd GammaDeltaTcellsD2+ bigWig gamma delta positive T cells, donor2_CNhs13915_11938-126A3_forward 1 2427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor2.CNhs13915.11938-126A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gamma delta positive T cells, donor2_CNhs13915_11938-126A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11938-126A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GammaDeltaTcellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GammaDeltaPositiveTCellsDonor2_CNhs13915_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF440YLL ENCSR286LPH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615 ZNF615 peaks 4 2428 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/7ee326cd-e9b6-4b16-87e6-e2cc1f3c547b/ENCFF440YLL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615 ZNF615 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR286LPH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF440YLL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF052TQG ENCSR314IOV Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-1 beta for 1 hour DNase peak 4 2428 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/facb2028-98f1-4c41-89b9-75e20efaa43b/ENCFF052TQG.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-1 beta for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314IOV Peak\ track wgEncodeReg4Epigenetics_ENCFF052TQG\ type bigBed 5\ visibility squish\ GammaDeltaPositiveTCellsDonor2_CNhs13915_ctss_rev GammaDeltaTcellsD2- bigWig gamma delta positive T cells, donor2_CNhs13915_11938-126A3_reverse 0 2428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor2.CNhs13915.11938-126A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gamma delta positive T cells, donor2_CNhs13915_11938-126A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11938-126A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GammaDeltaTcellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GammaDeltaPositiveTCellsDonor2_CNhs13915_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3\ urlLabel FANTOM5 Details:\ GammaDeltaPositiveTCellsDonor2_CNhs13915_tpm_rev GammaDeltaTcellsD2- bigWig gamma delta positive T cells, donor2_CNhs13915_11938-126A3_reverse 1 2428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gamma%20delta%20positive%20T%20cells%2c%20donor2.CNhs13915.11938-126A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gamma delta positive T cells, donor2_CNhs13915_11938-126A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11938-126A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GammaDeltaTcellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GammaDeltaPositiveTCellsDonor2_CNhs13915_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11938-126A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF392NHD ENCSR286LPH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615 ZNF615 ENCSR286LPH signal 2 2429 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2557d23d-3257-48d3-85f9-f09c50229516/ENCFF392NHD.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF615 ZNF615 ENCSR286LPH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR286LPH Signal\ track wgEncodeReg4TfChip_ENCFF392NHD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF807MRC ENCSR314IOV Signal bigWig CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-1 beta for 1 hour DNase signal 2 2429 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/6fda6eda-c536-4bf2-97f4-1b7249050ead/ENCFF807MRC.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 26 years and female adult 39 years, treated with Interleukin-1 beta for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314IOV Signal\ track wgEncodeReg4Epigenetics_ENCFF807MRC\ type bigWig\ visibility full\ GingivalEpithelialCellsDonor1GEA11_CNhs11061_ctss_fwd GingivalEpithelialCellsD1+ bigWig Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_forward 0 2429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor1%20%28GEA11%29.CNhs11061.11221-116B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11221-116B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GingivalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GingivalEpithelialCellsDonor1GEA11_CNhs11061_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6\ urlLabel FANTOM5 Details:\ GingivalEpithelialCellsDonor1GEA11_CNhs11061_tpm_fwd GingivalEpithelialCellsD1+ bigWig Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_forward 1 2429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor1%20%28GEA11%29.CNhs11061.11221-116B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11221-116B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GingivalEpithelialCellsDonor1GEA11_CNhs11061_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF886JDF ENCSR286PCG Peak bigBed 5 K562 ZBED1 peaks 4 2430 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8b96fc15-45fa-441a-8992-ecb575941dc5/ENCFF886JDF.bigBed\ labelFields none\ longLabel K562 ZBED1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR286PCG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF886JDF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF958DWA ENCSR314KSZ Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 2430 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6786badc-3fa1-4e76-ab52-c6f9d2bf2916/ENCFF958DWA.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314KSZ Peak\ track wgEncodeReg4Epigenetics_ENCFF958DWA\ type bigBed 5\ visibility squish\ GingivalEpithelialCellsDonor1GEA11_CNhs11061_ctss_rev GingivalEpithelialCellsD1- bigWig Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_reverse 0 2430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor1%20%28GEA11%29.CNhs11061.11221-116B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11221-116B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GingivalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor1GEA11_CNhs11061_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6\ urlLabel FANTOM5 Details:\ GingivalEpithelialCellsDonor1GEA11_CNhs11061_tpm_rev GingivalEpithelialCellsD1- bigWig Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_reverse 1 2430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor1%20%28GEA11%29.CNhs11061.11221-116B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Gingival epithelial cells, donor1 (GEA11)_CNhs11061_11221-116B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11221-116B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor1GEA11_CNhs11061_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11221-116B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF137TFR ENCSR286PCG Signal bigWig K562 ZBED1 ENCSR286PCG signal 2 2431 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/16517f1c-d64b-47db-87f1-4485babe3a83/ENCFF137TFR.bigWig\ color 254,75,173\ longLabel K562 ZBED1 ENCSR286PCG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR286PCG Signal\ track wgEncodeReg4TfChip_ENCFF137TFR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF353SJI ENCSR314KSZ Signal bigWig Middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 2431 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/bd9de8c7-e4d7-4ac7-9f23-b83710563403/ENCFF353SJI.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314KSZ Signal\ track wgEncodeReg4Epigenetics_ENCFF353SJI\ type bigWig\ visibility full\ GingivalEpithelialCellsDonor2GEA14_CNhs11896_ctss_fwd GingivalEpithelialCellsD2+ bigWig Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_forward 0 2431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor2%20%28GEA14%29.CNhs11896.11302-117B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11302-117B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GingivalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GingivalEpithelialCellsDonor2GEA14_CNhs11896_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6\ urlLabel FANTOM5 Details:\ GingivalEpithelialCellsDonor2GEA14_CNhs11896_tpm_fwd GingivalEpithelialCellsD2+ bigWig Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_forward 1 2431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor2%20%28GEA14%29.CNhs11896.11302-117B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11302-117B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GingivalEpithelialCellsDonor2GEA14_CNhs11896_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF913ACQ ENCSR288IJC Peak bigBed 5 MCF-7 MAZ peaks 4 2432 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/71185732-093e-49d5-9de6-c8cb2e346998/ENCFF913ACQ.bigBed\ labelFields none\ longLabel MCF-7 MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR288IJC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF913ACQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF115JCH ENCSR314SPW Peak bigBed 5 Tibial nerve tissue female adult 53 years H3K4me3 peak 4 2432 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f9f0f60d-0608-4c05-a1cd-94d105a57617/ENCFF115JCH.bigBed\ color 255,0,0\ longLabel Tibial nerve tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314SPW Peak\ track wgEncodeReg4Epigenetics_ENCFF115JCH\ type bigBed 5\ visibility squish\ GingivalEpithelialCellsDonor2GEA14_CNhs11896_ctss_rev GingivalEpithelialCellsD2- bigWig Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_reverse 0 2432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor2%20%28GEA14%29.CNhs11896.11302-117B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11302-117B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GingivalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor2GEA14_CNhs11896_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6\ urlLabel FANTOM5 Details:\ GingivalEpithelialCellsDonor2GEA14_CNhs11896_tpm_rev GingivalEpithelialCellsD2- bigWig Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_reverse 1 2432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor2%20%28GEA14%29.CNhs11896.11302-117B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Gingival epithelial cells, donor2 (GEA14)_CNhs11896_11302-117B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11302-117B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor2GEA14_CNhs11896_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11302-117B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF116ZNK ENCSR288IJC Signal bigWig MCF-7 MAZ ENCSR288IJC signal 2 2433 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/40862f21-427e-4c45-8a3c-cda2694a85ba/ENCFF116ZNK.bigWig\ color 65,171,173\ longLabel MCF-7 MAZ ENCSR288IJC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR288IJC Signal\ track wgEncodeReg4TfChip_ENCFF116ZNK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF400NQI ENCSR314SPW Signal bigWig Tibial nerve tissue female adult 53 years H3K4me3 signal 2 2433 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e7fec384-d41e-460b-ab49-a3342afc80b3/ENCFF400NQI.bigWig\ color 255,0,0\ longLabel Tibial nerve tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314SPW Signal\ track wgEncodeReg4Epigenetics_ENCFF400NQI\ type bigWig\ visibility full\ GingivalEpithelialCellsDonor3GEA15_CNhs11903_ctss_fwd GingivalEpithelialCellsD3+ bigWig Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_forward 0 2433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor3%20%28GEA15%29.CNhs11903.11379-118B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11379-118B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GingivalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GingivalEpithelialCellsDonor3GEA15_CNhs11903_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2\ urlLabel FANTOM5 Details:\ GingivalEpithelialCellsDonor3GEA15_CNhs11903_tpm_fwd GingivalEpithelialCellsD3+ bigWig Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_forward 1 2433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor3%20%28GEA15%29.CNhs11903.11379-118B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11379-118B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track GingivalEpithelialCellsDonor3GEA15_CNhs11903_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF550RPP ENCSR288MOZ Peak bigBed 5 K562 LARP7 peaks 4 2434 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/15f497db-58f6-446d-8397-587ac6fc7d66/ENCFF550RPP.bigBed\ labelFields none\ longLabel K562 LARP7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR288MOZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF550RPP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF621CLM ENCSR314WYC Peak bigBed 5 Neuron originated from H9 H3K4me3 peak 4 2434 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/90f9b658-f8ff-45dd-b73e-48b0270da2be/ENCFF621CLM.bigBed\ color 255,0,0\ longLabel Neuron originated from H9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314WYC Peak\ track wgEncodeReg4Epigenetics_ENCFF621CLM\ type bigBed 5\ visibility squish\ GingivalEpithelialCellsDonor3GEA15_CNhs11903_ctss_rev GingivalEpithelialCellsD3- bigWig Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_reverse 0 2434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor3%20%28GEA15%29.CNhs11903.11379-118B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11379-118B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GingivalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor3GEA15_CNhs11903_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2\ urlLabel FANTOM5 Details:\ GingivalEpithelialCellsDonor3GEA15_CNhs11903_tpm_rev GingivalEpithelialCellsD3- bigWig Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_reverse 1 2434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Gingival%20epithelial%20cells%2c%20donor3%20%28GEA15%29.CNhs11903.11379-118B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Gingival epithelial cells, donor3 (GEA15)_CNhs11903_11379-118B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11379-118B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GingivalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track GingivalEpithelialCellsDonor3GEA15_CNhs11903_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11379-118B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF689OKC ENCSR288MOZ Signal bigWig K562 LARP7 ENCSR288MOZ signal 2 2435 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/f8194524-61e2-4719-872e-ce79d197a100/ENCFF689OKC.bigWig\ color 254,75,173\ longLabel K562 LARP7 ENCSR288MOZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR288MOZ Signal\ track wgEncodeReg4TfChip_ENCFF689OKC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF684OYD ENCSR314WYC Signal bigWig Neuron originated from H9 H3K4me3 signal 2 2435 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/c386daee-71e6-45d2-949d-4274881fedd4/ENCFF684OYD.bigWig\ color 255,0,0\ longLabel Neuron originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR314WYC Signal\ track wgEncodeReg4Epigenetics_ENCFF684OYD\ type bigWig\ visibility full\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_fwd HairFollicleDermalPapillaCellsD1+ bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward 0 2435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_fwd HairFollicleDermalPapillaCellsD1+ bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward 1 2435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF407TAZ ENCSR288NNJ Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416 ZNF416 peaks 4 2436 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/04/18981134-b27f-46db-95b2-058752571e21/ENCFF407TAZ.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416 ZNF416 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR288NNJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF407TAZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF651JWM ENCSR315EZG Peak bigBed 5 Transverse colon tissue female adult 51 years H3K4me3 peak 4 2436 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/d275b349-8feb-4009-acad-b2288627a25b/ENCFF651JWM.bigBed\ color 255,0,0\ longLabel Transverse colon tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315EZG Peak\ track wgEncodeReg4Epigenetics_ENCFF651JWM\ type bigBed 5\ visibility squish\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_rev HairFollicleDermalPapillaCellsD1- bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse 0 2436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_rev HairFollicleDermalPapillaCellsD1- bigWig Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse 1 2436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor1.CNhs12501.11271-116H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor1_CNhs12501_11271-116H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11271-116H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor1_CNhs12501_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11271-116H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF761SOL ENCSR288NNJ Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416 ZNF416 ENCSR288NNJ signal 2 2437 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/04/c6aa4c5f-ce29-4063-91f7-2d98d8cb6050/ENCFF761SOL.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF416 ZNF416 ENCSR288NNJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR288NNJ Signal\ track wgEncodeReg4TfChip_ENCFF761SOL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF487CTD ENCSR315EZG Signal bigWig Transverse colon tissue female adult 51 years H3K4me3 signal 2 2437 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f2972e8a-5cc2-4176-90ce-c9e25800f2be/ENCFF487CTD.bigWig\ color 255,0,0\ longLabel Transverse colon tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315EZG Signal\ track wgEncodeReg4Epigenetics_ENCFF487CTD\ type bigWig\ visibility full\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_fwd HairFollicleDermalPapillaCellsD2+ bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward 0 2437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_fwd HairFollicleDermalPapillaCellsD2+ bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward 1 2437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF324FNA ENCSR289PSX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM10 PRDM10 peaks 4 2438 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b10686a8-97de-4408-9c12-cb191fabd4a1/ENCFF324FNA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM10 PRDM10 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR289PSX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF324FNA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF123AEM ENCSR315IRO Peak bigBed 5 HUES6 H3K27ac peak 4 2438 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/6a660f7a-907a-4463-9506-c9e6119918a8/ENCFF123AEM.bigBed\ color 181,145,0\ longLabel HUES6 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315IRO Peak\ track wgEncodeReg4Epigenetics_ENCFF123AEM\ type bigBed 5\ visibility squish\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_rev HairFollicleDermalPapillaCellsD2- bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse 0 2438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_rev HairFollicleDermalPapillaCellsD2- bigWig Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse 1 2438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor2.CNhs11979.11348-117G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor2_CNhs11979_11348-117G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11348-117G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor2_CNhs11979_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11348-117G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF871EDG ENCSR289PSX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM10 PRDM10 ENCSR289PSX signal 2 2439 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/cce9829c-9eac-401c-b163-7ef924478ef3/ENCFF871EDG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM10 PRDM10 ENCSR289PSX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR289PSX Signal\ track wgEncodeReg4TfChip_ENCFF871EDG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF392JWG ENCSR315IRO Signal bigWig HUES6 H3K27ac signal 2 2439 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/92aaa37b-87af-4d61-9d24-59e49b615777/ENCFF392JWG.bigWig\ color 181,145,0\ longLabel HUES6 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315IRO Signal\ track wgEncodeReg4Epigenetics_ENCFF392JWG\ type bigWig\ visibility full\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_fwd HairFollicleDermalPapillaCellsD3+ bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward 0 2439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_fwd HairFollicleDermalPapillaCellsD3+ bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward 1 2439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF731LLC ENCSR289VTP Peak bigBed 5 Spleen tissue female adult (53 years) POLR2A peaks 4 2440 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/df4b7674-2013-4504-8e0e-38e4013891b0/ENCFF731LLC.bigBed\ labelFields none\ longLabel Spleen tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR289VTP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF731LLC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF931WNQ ENCSR315LPR Peak bigBed 5 Pancreas tissue female adult 30 years H3K4me3 peak 4 2440 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/f9b61b2e-c9ae-4604-adae-bc772f0e5f10/ENCFF931WNQ.bigBed\ color 255,0,0\ longLabel Pancreas tissue female adult 30 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315LPR Peak\ track wgEncodeReg4Epigenetics_ENCFF931WNQ\ type bigBed 5\ visibility squish\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_rev HairFollicleDermalPapillaCellsD3- bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse 0 2440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleDermalPapillaCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_rev HairFollicleDermalPapillaCellsD3- bigWig Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse 1 2440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Dermal%20Papilla%20Cells%2c%20donor3.CNhs12030.11420-118F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Dermal Papilla Cells, donor3_CNhs12030_11420-118F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11420-118F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleDermalPapillaCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleDermalPapillaCellsDonor3_CNhs12030_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11420-118F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF712DLN ENCSR289VTP Signal bigWig Spleen tissue female adult (53 years) POLR2A ENCSR289VTP signal 2 2441 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/be0fa7a9-fb6b-47dc-99ea-b91c65785b95/ENCFF712DLN.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (53 years) POLR2A ENCSR289VTP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR289VTP Signal\ track wgEncodeReg4TfChip_ENCFF712DLN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF036WJV ENCSR315LPR Signal bigWig Pancreas tissue female adult 30 years H3K4me3 signal 2 2441 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/267e1601-2fb7-4e4e-a79d-26c6abc372e6/ENCFF036WJV.bigWig\ color 255,0,0\ longLabel Pancreas tissue female adult 30 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315LPR Signal\ track wgEncodeReg4Epigenetics_ENCFF036WJV\ type bigWig\ visibility full\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_fwd HairFollicleOuterRootSheathCellsD1+ bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward 0 2441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_fwd HairFollicleOuterRootSheathCellsD1+ bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward 1 2441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF139LXS ENCSR290MUH Peak bigBed 5 K562 stably expressing GABPA GABPA peaks 4 2442 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/d33f2305-bb00-42ac-973e-e0c1c553aa37/ENCFF139LXS.bigBed\ labelFields none\ longLabel K562 stably expressing GABPA GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290MUH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF139LXS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF223HIG ENCSR315NAC Peak bigBed 5 LNCAP CTCF peak 4 2442 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/399096fd-0d12-4363-99eb-0b06ff1c3d17/ENCFF223HIG.bigBed\ color 0,176,240\ labelFields none\ longLabel LNCAP CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315NAC Peak\ track wgEncodeReg4Epigenetics_ENCFF223HIG\ type bigBed 5\ visibility squish\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_rev HairFollicleOuterRootSheathCellsD1- bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse 0 2442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_rev HairFollicleOuterRootSheathCellsD1- bigWig Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse 1 2442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor1.CNhs12339.11504-119G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor1_CNhs12339_11504-119G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11504-119G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor1_CNhs12339_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11504-119G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF624HFG ENCSR290MUH Signal bigWig K562 stably expressing GABPA GABPA ENCSR290MUH signal 2 2443 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/9c85ea2e-4737-4354-95ba-e84918bb3e8c/ENCFF624HFG.bigWig\ color 254,75,173\ longLabel K562 stably expressing GABPA GABPA ENCSR290MUH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290MUH Signal\ track wgEncodeReg4TfChip_ENCFF624HFG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF857BSR ENCSR315NAC Signal bigWig LNCAP CTCF signal 2 2443 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d4b61550-31fc-4603-918e-7fbcf8fda5c8/ENCFF857BSR.bigWig\ color 0,176,240\ longLabel LNCAP CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315NAC Signal\ track wgEncodeReg4Epigenetics_ENCFF857BSR\ type bigWig\ visibility full\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_fwd HairFollicleOuterRootSheathCellsD2+ bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward 0 2443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_fwd HairFollicleOuterRootSheathCellsD2+ bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward 1 2443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF306FRW ENCSR290QBB Peak bigBed 5 Upper lobe of left lung tissue male adult (54 years) EP300 peaks 4 2444 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/1099a9ad-eed0-4245-88f3-8947fc531fa5/ENCFF306FRW.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue male adult (54 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290QBB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF306FRW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF968SDY ENCSR315QWI Peak bigBed 5 GM21737 ATAC peak 4 2444 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/f72232b8-69e2-4a17-adc6-4db6267d59f0/ENCFF968SDY.bigBed\ color 2,199,185\ longLabel GM21737 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315QWI Peak\ track wgEncodeReg4Epigenetics_ENCFF968SDY\ type bigBed 5\ visibility squish\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_rev HairFollicleOuterRootSheathCellsD2- bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse 0 2444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HairFollicleOuterRootSheathCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_rev HairFollicleOuterRootSheathCellsD2- bigWig Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse 1 2444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hair%20Follicle%20Outer%20Root%20Sheath%20Cells%2c%20donor2.CNhs12347.11584-120F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hair Follicle Outer Root Sheath Cells, donor2_CNhs12347_11584-120F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11584-120F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HairFollicleOuterRootSheathCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HairFollicleOuterRootSheathCellsDonor2_CNhs12347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11584-120F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF739DOF ENCSR290QBB Signal bigWig Upper lobe of left lung tissue male adult (54 years) EP300 ENCSR290QBB signal 2 2445 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/02fa9e14-52ab-4895-a5ea-2cad158885ee/ENCFF739DOF.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (54 years) EP300 ENCSR290QBB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290QBB Signal\ track wgEncodeReg4TfChip_ENCFF739DOF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF261VHL ENCSR315QWI Signal bigWig GM21737 ATAC signal 2 2445 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/b0ddddb9-6392-4420-97a7-80f2891b36f1/ENCFF261VHL.bigWig\ color 2,199,185\ longLabel GM21737 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315QWI Signal\ track wgEncodeReg4Epigenetics_ENCFF261VHL\ type bigWig\ visibility full\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_fwd HepaticSinusoidalEndothelialCellsD1+ bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward 0 2445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_fwd HepaticSinusoidalEndothelialCellsD1+ bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward 1 2445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF994GSG ENCSR290SSQ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ MAZ peaks 4 2446 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/ee0a4d65-7e52-4db7-b1d7-4565f9831034/ENCFF994GSG.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290SSQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF994GSG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF133DZB ENCSR315UUP Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 2446 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/90fdbb8b-0744-479f-9308-f492cddd661e/ENCFF133DZB.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315UUP Peak\ track wgEncodeReg4Epigenetics_ENCFF133DZB\ type bigBed 5\ visibility squish\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_rev HepaticSinusoidalEndothelialCellsD1- bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse 0 2446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_rev HepaticSinusoidalEndothelialCellsD1- bigWig Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse 1 2446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor1.CNhs12075.11521-119H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor1_CNhs12075_11521-119H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11521-119H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor1_CNhs12075_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11521-119H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF214VQU ENCSR290SSQ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ MAZ ENCSR290SSQ signal 2 2447 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/c049c0ed-09a2-421b-aa85-00038908dfac/ENCFF214VQU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MAZ MAZ ENCSR290SSQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290SSQ Signal\ track wgEncodeReg4TfChip_ENCFF214VQU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF969AJT ENCSR315UUP Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 2447 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/c63bc534-5c88-4ad8-ae99-7a1f475338fd/ENCFF969AJT.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315UUP Signal\ track wgEncodeReg4Epigenetics_ENCFF969AJT\ type bigWig\ visibility full\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_fwd HepaticSinusoidalEndothelialCellsD2+ bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward 0 2447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_fwd HepaticSinusoidalEndothelialCellsD2+ bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward 1 2447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF911LGW ENCSR290ZOS Peak bigBed 5 Liver tissue female child (4 years) EGR1 peaks 4 2448 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/17c65293-5672-484e-8558-95e88dffbbe3/ENCFF911LGW.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290ZOS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF911LGW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF814NQJ ENCSR315WAC Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase peak 4 2448 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/a03f92db-e0b2-4dc7-93e7-265c6da112b9/ENCFF814NQJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315WAC Peak\ track wgEncodeReg4Epigenetics_ENCFF814NQJ\ type bigBed 5\ visibility squish\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_rev HepaticSinusoidalEndothelialCellsD2- bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse 0 2448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_rev HepaticSinusoidalEndothelialCellsD2- bigWig Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse 1 2448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor2.CNhs12092.11601-120H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor2_CNhs12092_11601-120H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11601-120H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor2_CNhs12092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11601-120H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF961RMR ENCSR290ZOS Signal bigWig Liver tissue female child (4 years) EGR1 ENCSR290ZOS signal 2 2449 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a8bd4c02-6372-435f-a899-caafde866796/ENCFF961RMR.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) EGR1 ENCSR290ZOS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR290ZOS Signal\ track wgEncodeReg4TfChip_ENCFF961RMR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF789HOF ENCSR315WAC Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase signal 2 2449 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/810ec1c0-7e33-45a1-a064-5854f59b5cf9/ENCFF789HOF.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR315WAC Signal\ track wgEncodeReg4Epigenetics_ENCFF789HOF\ type bigWig\ visibility full\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_fwd HepaticSinusoidalEndothelialCellsD3+ bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward 0 2449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_fwd HepaticSinusoidalEndothelialCellsD3+ bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward 1 2449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF614TXG ENCSR291MJH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2A MEF2A peaks 4 2450 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b548bfcd-7f0f-440a-a98b-88ec4de2dc72/ENCFF614TXG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2A MEF2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR291MJH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF614TXG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF019OAH ENCSR316LNO Peak bigBed 5 Gastroesophageal sphincter tissue female adult 51 years H3K27ac peak 4 2450 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f671717e-02a1-4e79-ab31-ed02d6a3a4f3/ENCFF019OAH.bigBed\ color 181,145,0\ longLabel Gastroesophageal sphincter tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR316LNO Peak\ track wgEncodeReg4Epigenetics_ENCFF019OAH\ type bigBed 5\ visibility squish\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_rev HepaticSinusoidalEndothelialCellsD3- bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse 0 2450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticSinusoidalEndothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_rev HepaticSinusoidalEndothelialCellsD3- bigWig Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse 1 2450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Sinusoidal%20Endothelial%20Cells%2c%20donor3.CNhs12625.11682-122H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Sinusoidal Endothelial Cells, donor3_CNhs12625_11682-122H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11682-122H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticSinusoidalEndothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticSinusoidalEndothelialCellsDonor3_CNhs12625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11682-122H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF905CBB ENCSR291MJH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2A MEF2A ENCSR291MJH signal 2 2451 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2da57013-bfe9-48db-b821-90228a284ab4/ENCFF905CBB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2A MEF2A ENCSR291MJH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR291MJH Signal\ track wgEncodeReg4TfChip_ENCFF905CBB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF073BDL ENCSR316LNO Signal bigWig Gastroesophageal sphincter tissue female adult 51 years H3K27ac signal 2 2451 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/39cf3397-06d6-42c5-b4a2-f58d89ef80bd/ENCFF073BDL.bigWig\ color 181,145,0\ longLabel Gastroesophageal sphincter tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR316LNO Signal\ track wgEncodeReg4Epigenetics_ENCFF073BDL\ type bigWig\ visibility full\ HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_fwd HepaticStellateCellsD1+ bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward 0 2451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_fwd HepaticStellateCellsD1+ bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward 1 2451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF615CWQ ENCSR293QAR Peak bigBed 5 GM12878 MTA2 peaks 4 2452 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/94b5766c-ab6c-4346-a233-cb41e315e0eb/ENCFF615CWQ.bigBed\ labelFields none\ longLabel GM12878 MTA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR293QAR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF615CWQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF191OBU ENCSR316UDN Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 37 years DNase peak 4 2452 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/1b2ad0ed-9019-48f0-b4fb-68276bcc70e4/ENCFF191OBU.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta T cell male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR316UDN Peak\ track wgEncodeReg4Epigenetics_ENCFF191OBU\ type bigBed 5\ visibility squish\ HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_rev HepaticStellateCellsD1- bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse 0 2452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_rev HepaticStellateCellsD1- bigWig Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse 1 2452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor1.CNhs11335.11524-119I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor1_CNhs11335_11524-119I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11524-119I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor1_CNhs11335_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11524-119I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF754MQM ENCSR293QAR Signal bigWig GM12878 MTA2 ENCSR293QAR signal 2 2453 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/034ceb0a-28df-4046-af4f-b7a661b4c1e1/ENCFF754MQM.bigWig\ color 254,75,173\ longLabel GM12878 MTA2 ENCSR293QAR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR293QAR Signal\ track wgEncodeReg4TfChip_ENCFF754MQM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF938MFJ ENCSR316UDN Signal bigWig CD8-positive, alpha-beta T cell male adult 37 years DNase signal 2 2453 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/97531652-bd21-49d6-a2ab-795a0f9249a5/ENCFF938MFJ.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta T cell male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR316UDN Signal\ track wgEncodeReg4Epigenetics_ENCFF938MFJ\ type bigWig\ visibility full\ HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_fwd HepaticStellateCellsD2+ bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward 0 2453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_fwd HepaticStellateCellsD2+ bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward 1 2453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF505LUC ENCSR294JWV Peak bigBed 5 A549 ZFP36 peaks 4 2454 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/ea0c4085-e84b-4dc9-a591-dc3e8097bc48/ENCFF505LUC.bigBed\ labelFields none\ longLabel A549 ZFP36 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR294JWV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF505LUC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF547KLA ENCSR317QET Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K4me3 peak 4 2454 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/59011561-5b82-47ab-9d5e-01588c96150f/ENCFF547KLA.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR317QET Peak\ track wgEncodeReg4Epigenetics_ENCFF547KLA\ type bigBed 5\ visibility squish\ HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_rev HepaticStellateCellsD2- bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse 0 2454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_rev HepaticStellateCellsD2- bigWig Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse 1 2454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor2.CNhs12093.11604-120I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor2_CNhs12093_11604-120I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11604-120I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor2_CNhs12093_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11604-120I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF751STB ENCSR294JWV Signal bigWig A549 ZFP36 ENCSR294JWV signal 2 2455 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/4bbbdb90-20bc-4e46-95d4-b656a3bd7ae5/ENCFF751STB.bigWig\ color 130,163,45\ longLabel A549 ZFP36 ENCSR294JWV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR294JWV Signal\ track wgEncodeReg4TfChip_ENCFF751STB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF816CVK ENCSR317QET Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K4me3 signal 2 2455 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/69c69315-f14c-4b92-9945-db2ab360e193/ENCFF816CVK.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 38 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR317QET Signal\ track wgEncodeReg4Epigenetics_ENCFF816CVK\ type bigWig\ visibility full\ HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_fwd HepaticStellateCellsD3+ bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward 0 2455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_fwd HepaticStellateCellsD3+ bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward 1 2455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF569SYP ENCSR295BIP Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF777 ZNF777 peaks 4 2456 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/488af7e4-8668-48d2-905b-3d2168c394cd/ENCFF569SYP.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF777 ZNF777 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR295BIP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF569SYP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF435NLV ENCSR317SIH Peak bigBed 5 Muscle of back tissue male embryo 91 days DNase peak 4 2456 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/1bd290b1-71b7-44a8-be0e-025317b02074/ENCFF435NLV.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR317SIH Peak\ track wgEncodeReg4Epigenetics_ENCFF435NLV\ type bigBed 5\ visibility squish\ HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_rev HepaticStellateCellsD3- bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse 0 2456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepaticStellateCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_rev HepaticStellateCellsD3- bigWig Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse 1 2456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatic%20Stellate%20Cells%20%28lipocyte%29%2c%20donor3.CNhs12627.11685-122I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatic Stellate Cells (lipocyte), donor3_CNhs12627_11685-122I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11685-122I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepaticStellateCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepaticStellateCellsLipocyteDonor3_CNhs12627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11685-122I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF421SQZ ENCSR295BIP Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF777 ZNF777 ENCSR295BIP signal 2 2457 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/8d6b7bdc-5f00-4bbb-bab8-f6727869610b/ENCFF421SQZ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF777 ZNF777 ENCSR295BIP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR295BIP Signal\ track wgEncodeReg4TfChip_ENCFF421SQZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF655ADL ENCSR317SIH Signal bigWig Muscle of back tissue male embryo 91 days DNase signal 2 2457 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/48113e25-744b-447e-837e-7c8741372742/ENCFF655ADL.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR317SIH Signal\ track wgEncodeReg4Epigenetics_ENCFF655ADL\ type bigWig\ visibility full\ HepatocyteDonor1_CNhs12340_ctss_fwd HepatocyteD1+ bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_forward 0 2457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor1_CNhs12340_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_tpm_fwd HepatocyteD1+ bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_forward 1 2457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor1_CNhs12340_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF354HOQ ENCSR296JFK Peak bigBed 5 Heart left ventricle tissue male adult (43 years) CTCF peaks 4 2458 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/cef89504-9c04-4ef0-9895-5912ee45dad8/ENCFF354HOQ.bigBed\ labelFields none\ longLabel Heart left ventricle tissue male adult (43 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR296JFK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF354HOQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF266HGY ENCSR318HUC Peak bigBed 5 Thoracic aorta tissue male adult 54 years H3K27ac peak 4 2458 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/4d9145cf-aca9-4c93-bb96-eea237b77a51/ENCFF266HGY.bigBed\ color 181,145,0\ longLabel Thoracic aorta tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318HUC Peak\ track wgEncodeReg4Epigenetics_ENCFF266HGY\ type bigBed 5\ visibility squish\ HepatocyteDonor1_CNhs12340_ctss_rev HepatocyteD1- bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_reverse 0 2458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor1_CNhs12340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ HepatocyteDonor1_CNhs12340_tpm_rev HepatocyteD1- bigWig Hepatocyte, donor1_CNhs12340_11523-119I2_reverse 1 2458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor1.CNhs12340.11523-119I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor1_CNhs12340_11523-119I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11523-119I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor1_CNhs12340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11523-119I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF915AST ENCSR296JFK Signal bigWig Heart left ventricle tissue male adult (43 years) CTCF ENCSR296JFK signal 2 2459 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/f0edebb4-aad0-43af-b027-939e4e9d6468/ENCFF915AST.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (43 years) CTCF ENCSR296JFK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR296JFK Signal\ track wgEncodeReg4TfChip_ENCFF915AST\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF265UKI ENCSR318HUC Signal bigWig Thoracic aorta tissue male adult 54 years H3K27ac signal 2 2459 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/abd080eb-1395-46a9-9f4e-84e27341fc53/ENCFF265UKI.bigWig\ color 181,145,0\ longLabel Thoracic aorta tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318HUC Signal\ track wgEncodeReg4Epigenetics_ENCFF265UKI\ type bigWig\ visibility full\ HepatocyteDonor2_CNhs12349_ctss_fwd HepatocyteD2+ bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_forward 0 2459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor2_CNhs12349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_tpm_fwd HepatocyteD2+ bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_forward 1 2459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor2_CNhs12349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF948QSP ENCSR297CGF Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens KLF6 KLF6 peaks 4 2460 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/23741301-7c99-4717-9343-534f46e3d1e1/ENCFF948QSP.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens KLF6 KLF6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR297CGF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF948QSP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF766FRG ENCSR318JAA Peak bigBed 5 Left renal pelvis tissue male embryo 105 days DNase peak 4 2460 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/2103218f-a3e9-43a4-a276-0a6babf58d1d/ENCFF766FRG.bigBed\ color 6,218,147\ labelFields none\ longLabel Left renal pelvis tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318JAA Peak\ track wgEncodeReg4Epigenetics_ENCFF766FRG\ type bigBed 5\ visibility squish\ HepatocyteDonor2_CNhs12349_ctss_rev HepatocyteD2- bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_reverse 0 2460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor2_CNhs12349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor2_CNhs12349_tpm_rev HepatocyteD2- bigWig Hepatocyte, donor2_CNhs12349_11603-120I1_reverse 1 2460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor2.CNhs12349.11603-120I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor2_CNhs12349_11603-120I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11603-120I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor2_CNhs12349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11603-120I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF955XUI ENCSR297CGF Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens KLF6 KLF6 ENCSR297CGF signal 2 2461 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/597a45a6-fc36-4065-ab96-f78ed2c673e7/ENCFF955XUI.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens KLF6 KLF6 ENCSR297CGF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR297CGF Signal\ track wgEncodeReg4TfChip_ENCFF955XUI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF459MYY ENCSR318JAA Signal bigWig Left renal pelvis tissue male embryo 105 days DNase signal 2 2461 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/b7483997-71d5-49cf-b9b3-b57ab4679f18/ENCFF459MYY.bigWig\ color 6,218,147\ longLabel Left renal pelvis tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318JAA Signal\ track wgEncodeReg4Epigenetics_ENCFF459MYY\ type bigWig\ visibility full\ HepatocyteDonor3_CNhs12626_ctss_fwd HepatocyteD3+ bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_forward 0 2461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor3_CNhs12626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_tpm_fwd HepatocyteD3+ bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_forward 1 2461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track HepatocyteDonor3_CNhs12626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF170YNZ ENCSR297GII Peak bigBed 5 Liver tissue female child (4 years) HNF4G peaks 4 2462 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/e2b6a8d0-3d3f-4f98-8d69-a119290935a7/ENCFF170YNZ.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) HNF4G peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR297GII Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF170YNZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF651YHW ENCSR318PRQ Peak bigBed 5 Middle frontal gyrus tissue male adult 78 years DNase peak 4 2462 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/9d6ba89f-f99f-419e-bf32-eb82dcaa0b80/ENCFF651YHW.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal gyrus tissue male adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318PRQ Peak\ track wgEncodeReg4Epigenetics_ENCFF651YHW\ type bigBed 5\ visibility squish\ HepatocyteDonor3_CNhs12626_ctss_rev HepatocyteD3- bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_reverse 0 2462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HepatocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor3_CNhs12626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ HepatocyteDonor3_CNhs12626_tpm_rev HepatocyteD3- bigWig Hepatocyte, donor3_CNhs12626_11684-122I1_reverse 1 2462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Hepatocyte%2c%20donor3.CNhs12626.11684-122I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Hepatocyte, donor3_CNhs12626_11684-122I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11684-122I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HepatocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track HepatocyteDonor3_CNhs12626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11684-122I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF039RVF ENCSR297GII Signal bigWig Liver tissue female child (4 years) HNF4G ENCSR297GII signal 2 2463 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/d0c62aa6-2fb8-4866-a1b5-bf578465c1e4/ENCFF039RVF.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) HNF4G ENCSR297GII signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR297GII Signal\ track wgEncodeReg4TfChip_ENCFF039RVF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF874PJM ENCSR318PRQ Signal bigWig Middle frontal gyrus tissue male adult 78 years DNase signal 2 2463 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/28dd3744-01a9-4359-99b5-a4a8d57e21e3/ENCFF874PJM.bigWig\ color 6,218,147\ longLabel Middle frontal gyrus tissue male adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318PRQ Signal\ track wgEncodeReg4Epigenetics_ENCFF874PJM\ type bigWig\ visibility full\ ImmatureLangerhansCellsDonor1_CNhs13537_ctss_fwd ImmatureLangerhansCellsD1+ bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_forward 0 2463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor1_CNhs13537_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_tpm_fwd ImmatureLangerhansCellsD1+ bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_forward 1 2463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor1_CNhs13537_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF263XZK ENCSR298DSB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF180 ZNF180 peaks 4 2464 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/2574f587-5b81-4f3c-8630-9b818369b180/ENCFF263XZK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF180 ZNF180 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298DSB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF263XZK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF971JXQ ENCSR318WOD Peak bigBed 5 Lung tissue male embryo 103 days DNase peak 4 2464 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/4686c398-7059-45be-b6d5-aaf190b97269/ENCFF971JXQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue male embryo 103 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318WOD Peak\ track wgEncodeReg4Epigenetics_ENCFF971JXQ\ type bigBed 5\ visibility squish\ ImmatureLangerhansCellsDonor1_CNhs13537_ctss_rev ImmatureLangerhansCellsD1- bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse 0 2464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor1_CNhs13537_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor1_CNhs13537_tpm_rev ImmatureLangerhansCellsD1- bigWig immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse 1 2464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor1.CNhs13537.11904-125F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor1_CNhs13537_11904-125F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11904-125F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor1_CNhs13537_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11904-125F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF394IAH ENCSR298DSB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF180 ZNF180 ENCSR298DSB signal 2 2465 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/2cbbf656-be53-4255-8cfb-4451d2e0665c/ENCFF394IAH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF180 ZNF180 ENCSR298DSB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298DSB Signal\ track wgEncodeReg4TfChip_ENCFF394IAH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF804QDI ENCSR318WOD Signal bigWig Lung tissue male embryo 103 days DNase signal 2 2465 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/0b0a9c84-3f42-4aa9-9357-16a34970eb4d/ENCFF804QDI.bigWig\ color 6,218,147\ longLabel Lung tissue male embryo 103 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR318WOD Signal\ track wgEncodeReg4Epigenetics_ENCFF804QDI\ type bigWig\ visibility full\ ImmatureLangerhansCellsDonor2_CNhs13480_ctss_fwd ImmatureLangerhansCellsD2+ bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_forward 0 2465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor2_CNhs13480_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_tpm_fwd ImmatureLangerhansCellsD2+ bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_forward 1 2465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ImmatureLangerhansCellsDonor2_CNhs13480_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF359DNT ENCSR298JCG Peak bigBed 5 K562 NCOR1 peaks 4 2466 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/bb8c1b1f-b776-4d16-a41f-66eb76c732cb/ENCFF359DNT.bigBed\ labelFields none\ longLabel K562 NCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298JCG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF359DNT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962YYB ENCSR319HLH Peak bigBed 5 CD14-positive monocyte H3K27ac peak 4 2466 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/6dfbf135-cf38-4b64-bcc6-ee2c82ae4dd7/ENCFF962YYB.bigBed\ color 181,145,0\ longLabel CD14-positive monocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR319HLH Peak\ track wgEncodeReg4Epigenetics_ENCFF962YYB\ type bigBed 5\ visibility squish\ ImmatureLangerhansCellsDonor2_CNhs13480_ctss_rev ImmatureLangerhansCellsD2- bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse 0 2466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ImmatureLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor2_CNhs13480_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ ImmatureLangerhansCellsDonor2_CNhs13480_tpm_rev ImmatureLangerhansCellsD2- bigWig immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse 1 2466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/immature%20langerhans%20cells%2c%20donor2.CNhs13480.11905-125F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel immature langerhans cells, donor2_CNhs13480_11905-125F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11905-125F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ImmatureLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ImmatureLangerhansCellsDonor2_CNhs13480_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11905-125F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF139XJA ENCSR298JCG Signal bigWig K562 NCOR1 ENCSR298JCG signal 2 2467 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/ffaab81a-066d-42a5-9e9f-fe0a23b3e623/ENCFF139XJA.bigWig\ color 254,75,173\ longLabel K562 NCOR1 ENCSR298JCG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298JCG Signal\ track wgEncodeReg4TfChip_ENCFF139XJA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF839BEU ENCSR319HLH Signal bigWig CD14-positive monocyte H3K27ac signal 2 2467 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/99b683a7-91f6-438a-ad29-ad75365f2a5a/ENCFF839BEU.bigWig\ color 181,145,0\ longLabel CD14-positive monocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR319HLH Signal\ track wgEncodeReg4Epigenetics_ENCFF839BEU\ type bigWig\ visibility full\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_fwd IntestinalEpithelialCellsD1+ bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward 0 2467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IntestinalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_fwd IntestinalEpithelialCellsD1+ bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward 1 2467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IntestinalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF683ZWN ENCSR298QUH Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MZF1 MZF1 peaks 4 2468 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/5fb07f97-943f-4aec-858f-67afa2f52c04/ENCFF683ZWN.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MZF1 MZF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298QUH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF683ZWN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF530WMZ ENCSR320MYR Peak bigBed 5 Chorionic villus tissue male embryo 38 weeks H3K4me3 peak 4 2468 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3aaacd25-a294-4d14-9d1c-697012f93e87/ENCFF530WMZ.bigBed\ color 255,0,0\ longLabel Chorionic villus tissue male embryo 38 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320MYR Peak\ track wgEncodeReg4Epigenetics_ENCFF530WMZ\ type bigBed 5\ visibility squish\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_rev IntestinalEpithelialCellsD1- bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse 0 2468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IntestinalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_rev IntestinalEpithelialCellsD1- bigWig Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse 1 2468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.CNhs10875.11246-116E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Intestinal epithelial cells (polarized), donor1_CNhs10875_11246-116E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11246-116E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IntestinalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IntestinalEpithelialCellsPolarizedDonor1_CNhs10875_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11246-116E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF121JMZ ENCSR298QUH Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MZF1 MZF1 ENCSR298QUH signal 2 2469 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/2d74b6ec-345d-40b3-b4dc-c5e1935c89d8/ENCFF121JMZ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MZF1 MZF1 ENCSR298QUH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298QUH Signal\ track wgEncodeReg4TfChip_ENCFF121JMZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF020YCR ENCSR320MYR Signal bigWig Chorionic villus tissue male embryo 38 weeks H3K4me3 signal 2 2469 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/38d700a1-0893-4b4f-b14e-99ba08a54ad0/ENCFF020YCR.bigWig\ color 255,0,0\ longLabel Chorionic villus tissue male embryo 38 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320MYR Signal\ track wgEncodeReg4Epigenetics_ENCFF020YCR\ type bigWig\ visibility full\ IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_fwd IrisPigmentEpithelialCellsD1+ bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward 0 2469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IrisPigmentEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_fwd IrisPigmentEpithelialCellsD1+ bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward 1 2469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IrisPigmentEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF607YRA ENCSR298ZPF Peak bigBed 5 Gastroesophageal sphincter tissue female adult (51 years) CTCF peaks 4 2470 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/442550b7-63e4-4c93-815f-a57b6a992d24/ENCFF607YRA.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298ZPF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF607YRA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF957ECI ENCSR320PGJ Peak bigBed 5 Heart tissue male embryo 105 days DNase peak 4 2470 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/96953407-04b8-4c09-b01b-1cead05a682e/ENCFF957ECI.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320PGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF957ECI\ type bigBed 5\ visibility squish\ IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_rev IrisPigmentEpithelialCellsD1- bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse 0 2470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel IrisPigmentEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_rev IrisPigmentEpithelialCellsD1- bigWig Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse 1 2470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Iris%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs12596.11530-119I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Iris Pigment Epithelial Cells, donor1_CNhs12596_11530-119I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11530-119I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel IrisPigmentEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track IrisPigmentEpithelialCellsDonor1_CNhs12596_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11530-119I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF378JMP ENCSR298ZPF Signal bigWig Gastroesophageal sphincter tissue female adult (51 years) CTCF ENCSR298ZPF signal 2 2471 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/73c56e55-86a3-4f50-bb27-612e00cf0b85/ENCFF378JMP.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (51 years) CTCF ENCSR298ZPF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR298ZPF Signal\ track wgEncodeReg4TfChip_ENCFF378JMP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF524ELS ENCSR320PGJ Signal bigWig Heart tissue male embryo 105 days DNase signal 2 2471 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/275e6616-a3d0-4fc3-b891-73eb64874e94/ENCFF524ELS.bigWig\ color 6,218,147\ longLabel Heart tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320PGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF524ELS\ type bigWig\ visibility full\ KeratinocyteEpidermalDonor1_CNhs11064_ctss_fwd KeratinocyteEpidermalD1+ bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward 0 2471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor1_CNhs11064_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_tpm_fwd KeratinocyteEpidermalD1+ bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward 1 2471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor1_CNhs11064_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF110TAD ENCSR299CAV Peak bigBed 5 Breast epithelium tissue female adult (53 years) POLR2A peaks 4 2472 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/b49b5943-4fcc-4410-b735-48490d1c21bf/ENCFF110TAD.bigBed\ labelFields none\ longLabel Breast epithelium tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR299CAV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF110TAD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF052CHH ENCSR320SVK Peak bigBed 5 Left renal pelvis tissue male embryo 120 days DNase peak 4 2472 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/99f1009b-8c7c-44eb-9f24-d458f0608fcc/ENCFF052CHH.bigBed\ color 6,218,147\ labelFields none\ longLabel Left renal pelvis tissue male embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320SVK Peak\ track wgEncodeReg4Epigenetics_ENCFF052CHH\ type bigBed 5\ visibility squish\ KeratinocyteEpidermalDonor1_CNhs11064_ctss_rev KeratinocyteEpidermalD1- bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse 0 2472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor1_CNhs11064_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor1_CNhs11064_tpm_rev KeratinocyteEpidermalD1- bigWig Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse 1 2472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor1.CNhs11064.11272-116H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor1_CNhs11064_11272-116H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11272-116H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor1_CNhs11064_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11272-116H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF865DIX ENCSR299CAV Signal bigWig Breast epithelium tissue female adult (53 years) POLR2A ENCSR299CAV signal 2 2473 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/f2ab05f3-26f0-44c2-8962-31c55b5b73b5/ENCFF865DIX.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (53 years) POLR2A ENCSR299CAV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR299CAV Signal\ track wgEncodeReg4TfChip_ENCFF865DIX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF155NBN ENCSR320SVK Signal bigWig Left renal pelvis tissue male embryo 120 days DNase signal 2 2473 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/30dd2f23-ad3e-4440-90db-79c9ae54c8e5/ENCFF155NBN.bigWig\ color 6,218,147\ longLabel Left renal pelvis tissue male embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320SVK Signal\ track wgEncodeReg4Epigenetics_ENCFF155NBN\ type bigWig\ visibility full\ KeratinocyteEpidermalDonor2_CNhs11381_ctss_fwd KeratinocyteEpidermalD2+ bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward 0 2473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor2_CNhs11381_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_tpm_fwd KeratinocyteEpidermalD2+ bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward 1 2473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor2_CNhs11381_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF929FPD ENCSR300DWM Peak bigBed 5 Osteocyte CTCF peaks 4 2474 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/ffc32319-50b7-4db0-8c6d-64cb19adc09e/ENCFF929FPD.bigBed\ labelFields none\ longLabel Osteocyte CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR300DWM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF929FPD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF876DXM ENCSR320TUJ Peak bigBed 5 Common myeloid progenitor, CD34-positive female adult 50 years DNase peak 4 2474 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/cdf0af0d-99ee-435d-a31a-1c7d28e85dda/ENCFF876DXM.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive female adult 50 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320TUJ Peak\ track wgEncodeReg4Epigenetics_ENCFF876DXM\ type bigBed 5\ visibility squish\ KeratinocyteEpidermalDonor2_CNhs11381_ctss_rev KeratinocyteEpidermalD2- bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse 0 2474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor2_CNhs11381_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor2_CNhs11381_tpm_rev KeratinocyteEpidermalD2- bigWig Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse 1 2474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor2.CNhs11381.11349-117G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor2_CNhs11381_11349-117G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11349-117G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor2_CNhs11381_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11349-117G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF897TLT ENCSR300DWM Signal bigWig Osteocyte CTCF ENCSR300DWM signal 2 2475 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2bd8a3cd-3bdc-45b1-ae39-27ee072dc75e/ENCFF897TLT.bigWig\ color 121,147,150\ longLabel Osteocyte CTCF ENCSR300DWM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR300DWM Signal\ track wgEncodeReg4TfChip_ENCFF897TLT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF891WPM ENCSR320TUJ Signal bigWig Common myeloid progenitor, CD34-positive female adult 50 years DNase signal 2 2475 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ef2e79ef-d26b-4c6a-af10-f749fab55368/ENCFF891WPM.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive female adult 50 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR320TUJ Signal\ track wgEncodeReg4Epigenetics_ENCFF891WPM\ type bigWig\ visibility full\ KeratinocyteEpidermalDonor3_CNhs12031_ctss_fwd KeratinocyteEpidermalD3+ bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward 0 2475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor3_CNhs12031_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_tpm_fwd KeratinocyteEpidermalD3+ bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward 1 2475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteEpidermalDonor3_CNhs12031_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF749FBO ENCSR300WOR Peak bigBed 5 Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 2476 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/19076655-b550-4363-8c68-cb4b27a490b0/ENCFF749FBO.bigBed\ labelFields none\ longLabel Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR300WOR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF749FBO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF345FCE ENCSR321KDV Peak bigBed 5 Squamous cell carcinoma skin epidermis tissue female adult 71 years H3K27ac peak 4 2476 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/910b0672-fd3d-4587-87c2-5adb7cb8b49c/ENCFF345FCE.bigBed\ color 181,145,0\ longLabel Squamous cell carcinoma skin epidermis tissue female adult 71 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321KDV Peak\ track wgEncodeReg4Epigenetics_ENCFF345FCE\ type bigBed 5\ visibility squish\ KeratinocyteEpidermalDonor3_CNhs12031_ctss_rev KeratinocyteEpidermalD3- bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse 0 2476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteEpidermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor3_CNhs12031_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ KeratinocyteEpidermalDonor3_CNhs12031_tpm_rev KeratinocyteEpidermalD3- bigWig Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse 1 2476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20epidermal%2c%20donor3.CNhs12031.11421-118F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - epidermal, donor3_CNhs12031_11421-118F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11421-118F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteEpidermalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteEpidermalDonor3_CNhs12031_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11421-118F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF303MTI ENCSR300WOR Signal bigWig Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR300WOR signal 2 2477 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ff41e020-7154-45f8-8009-92769a70a4bd/ENCFF303MTI.bigWig\ color 155,155,18\ longLabel Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR300WOR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR300WOR Signal\ track wgEncodeReg4TfChip_ENCFF303MTI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF554KFX ENCSR321KDV Signal bigWig Squamous cell carcinoma skin epidermis tissue female adult 71 years H3K27ac signal 2 2477 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/3c8647a7-0458-44b3-b680-8d8d7786aed9/ENCFF554KFX.bigWig\ color 181,145,0\ longLabel Squamous cell carcinoma skin epidermis tissue female adult 71 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321KDV Signal\ track wgEncodeReg4Epigenetics_ENCFF554KFX\ type bigWig\ visibility full\ KeratinocyteOralDonor1_CNhs10879_ctss_fwd KeratinocyteOralD1+ bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward 0 2477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteOralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteOralDonor1_CNhs10879_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_tpm_fwd KeratinocyteOralD1+ bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward 1 2477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteOralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratinocyteOralDonor1_CNhs10879_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF245WKP ENCSR302AWT Peak bigBed 5 K562 FOXK2 peaks 4 2478 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/222c745d-72a5-4084-8c85-d9236e661700/ENCFF245WKP.bigBed\ labelFields none\ longLabel K562 FOXK2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR302AWT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF245WKP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF843KQV ENCSR321KUC Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 38 years DNase peak 4 2478 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/5073f7c5-7585-4a7c-b9d2-843bd7509e99/ENCFF843KQV.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta T cell male adult 38 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321KUC Peak\ track wgEncodeReg4Epigenetics_ENCFF843KQV\ type bigBed 5\ visibility squish\ KeratinocyteOralDonor1_CNhs10879_ctss_rev KeratinocyteOralD1- bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse 0 2478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratinocyteOralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteOralDonor1_CNhs10879_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ KeratinocyteOralDonor1_CNhs10879_tpm_rev KeratinocyteOralD1- bigWig Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse 1 2478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratinocyte%20-%20oral%2c%20donor1.CNhs10879.11251-116E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratinocyte - oral, donor1_CNhs10879_11251-116E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11251-116E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratinocyteOralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratinocyteOralDonor1_CNhs10879_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11251-116E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF107YCQ ENCSR302AWT Signal bigWig K562 FOXK2 ENCSR302AWT signal 2 2479 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/0d73902e-9717-4f9a-a374-e5c85a089d9e/ENCFF107YCQ.bigWig\ color 254,75,173\ longLabel K562 FOXK2 ENCSR302AWT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR302AWT Signal\ track wgEncodeReg4TfChip_ENCFF107YCQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF492QZP ENCSR321KUC Signal bigWig CD8-positive, alpha-beta T cell male adult 38 years DNase signal 2 2479 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/01ee9378-9732-402d-8f18-a29a1f7ffd74/ENCFF492QZP.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta T cell male adult 38 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321KUC Signal\ track wgEncodeReg4Epigenetics_ENCFF492QZP\ type bigWig\ visibility full\ KeratocytesDonor1_CNhs11337_ctss_fwd KeratocytesD1+ bigWig Keratocytes, donor1_CNhs11337_11527-119I6_forward 0 2479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor1_CNhs11337_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_tpm_fwd KeratocytesD1+ bigWig Keratocytes, donor1_CNhs11337_11527-119I6_forward 1 2479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor1_CNhs11337_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF200GQF ENCSR303GFI Peak bigBed 5 RWPE1 CTCF peaks 4 2480 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/ee216340-953c-4fff-a461-4224df05b946/ENCFF200GQF.bigBed\ labelFields none\ longLabel RWPE1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR303GFI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF200GQF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF206CGM ENCSR321LKT Peak bigBed 5 Layer of hippocampus tissue male adult 73 years H3K27ac peak 4 2480 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/f63995fe-13b9-487c-94a2-f292fd50170f/ENCFF206CGM.bigBed\ color 181,145,0\ longLabel Layer of hippocampus tissue male adult 73 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321LKT Peak\ track wgEncodeReg4Epigenetics_ENCFF206CGM\ type bigBed 5\ visibility squish\ KeratocytesDonor1_CNhs11337_ctss_rev KeratocytesD1- bigWig Keratocytes, donor1_CNhs11337_11527-119I6_reverse 0 2480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor1_CNhs11337_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ KeratocytesDonor1_CNhs11337_tpm_rev KeratocytesD1- bigWig Keratocytes, donor1_CNhs11337_11527-119I6_reverse 1 2480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor1.CNhs11337.11527-119I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor1_CNhs11337_11527-119I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11527-119I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor1_CNhs11337_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11527-119I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF388NXU ENCSR303GFI Signal bigWig RWPE1 CTCF ENCSR303GFI signal 2 2481 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/2c05a786-6010-4754-b517-d17351f22d87/ENCFF388NXU.bigWig\ color 140,140,140\ longLabel RWPE1 CTCF ENCSR303GFI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR303GFI Signal\ track wgEncodeReg4TfChip_ENCFF388NXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF095QCF ENCSR321LKT Signal bigWig Layer of hippocampus tissue male adult 73 years H3K27ac signal 2 2481 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/124b7948-5bff-488f-8950-92d951e2dc58/ENCFF095QCF.bigWig\ color 181,145,0\ longLabel Layer of hippocampus tissue male adult 73 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321LKT Signal\ track wgEncodeReg4Epigenetics_ENCFF095QCF\ type bigWig\ visibility full\ KeratocytesDonor2_CNhs12095_ctss_fwd KeratocytesD2+ bigWig Keratocytes, donor2_CNhs12095_11607-120I5_forward 0 2481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor2_CNhs12095_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_tpm_fwd KeratocytesD2+ bigWig Keratocytes, donor2_CNhs12095_11607-120I5_forward 1 2481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor2_CNhs12095_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF518OXG ENCSR304AMN Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens IKZF3 IKZF3 peaks 4 2482 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/31/19949c66-d4d0-4ba2-aceb-6015f4b779b9/ENCFF518OXG.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens IKZF3 IKZF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304AMN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF518OXG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF026PHZ ENCSR321SZE Peak bigBed 5 Sigmoid colon tissue male child 3 years H3K4me3 peak 4 2482 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/dec971ee-23d7-4064-b4cd-4b87fe7ba6fb/ENCFF026PHZ.bigBed\ color 255,0,0\ longLabel Sigmoid colon tissue male child 3 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321SZE Peak\ track wgEncodeReg4Epigenetics_ENCFF026PHZ\ type bigBed 5\ visibility squish\ KeratocytesDonor2_CNhs12095_ctss_rev KeratocytesD2- bigWig Keratocytes, donor2_CNhs12095_11607-120I5_reverse 0 2482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor2_CNhs12095_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor2_CNhs12095_tpm_rev KeratocytesD2- bigWig Keratocytes, donor2_CNhs12095_11607-120I5_reverse 1 2482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor2.CNhs12095.11607-120I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor2_CNhs12095_11607-120I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11607-120I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor2_CNhs12095_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11607-120I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF135XNC ENCSR304AMN Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens IKZF3 IKZF3 ENCSR304AMN signal 2 2483 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/31/ad4c92f7-8c93-48a5-9dcd-3bbf1e054ae9/ENCFF135XNC.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens IKZF3 IKZF3 ENCSR304AMN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304AMN Signal\ track wgEncodeReg4TfChip_ENCFF135XNC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF379NYQ ENCSR321SZE Signal bigWig Sigmoid colon tissue male child 3 years H3K4me3 signal 2 2483 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9e41858e-149b-44e7-a7de-a14dd4862653/ENCFF379NYQ.bigWig\ color 255,0,0\ longLabel Sigmoid colon tissue male child 3 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR321SZE Signal\ track wgEncodeReg4Epigenetics_ENCFF379NYQ\ type bigWig\ visibility full\ KeratocytesDonor3_CNhs12921_ctss_fwd KeratocytesD3+ bigWig Keratocytes, donor3_CNhs12921_11688-122I5_forward 0 2483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor3_CNhs12921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_tpm_fwd KeratocytesD3+ bigWig Keratocytes, donor3_CNhs12921_11688-122I5_forward 1 2483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track KeratocytesDonor3_CNhs12921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF955FMX ENCSR304IVU Peak bigBed 5 Breast epithelium tissue female adult (51 years) POLR2A peaks 4 2484 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/842bb822-a7b9-4185-af2f-daea521314f5/ENCFF955FMX.bigBed\ labelFields none\ longLabel Breast epithelium tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304IVU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF955FMX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF033FWY ENCSR322BYN Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak 4 2484 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/63f9958f-bbac-49e8-8ef7-08a790daf434/ENCFF033FWY.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322BYN Peak\ track wgEncodeReg4Epigenetics_ENCFF033FWY\ type bigBed 5\ visibility squish\ KeratocytesDonor3_CNhs12921_ctss_rev KeratocytesD3- bigWig Keratocytes, donor3_CNhs12921_11688-122I5_reverse 0 2484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KeratocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor3_CNhs12921_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ KeratocytesDonor3_CNhs12921_tpm_rev KeratocytesD3- bigWig Keratocytes, donor3_CNhs12921_11688-122I5_reverse 1 2484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Keratocytes%2c%20donor3.CNhs12921.11688-122I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Keratocytes, donor3_CNhs12921_11688-122I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11688-122I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KeratocytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track KeratocytesDonor3_CNhs12921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11688-122I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF176MCK ENCSR304IVU Signal bigWig Breast epithelium tissue female adult (51 years) POLR2A ENCSR304IVU signal 2 2485 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/848b6541-956d-440e-b578-54f024959033/ENCFF176MCK.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (51 years) POLR2A ENCSR304IVU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304IVU Signal\ track wgEncodeReg4TfChip_ENCFF176MCK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF180JWH ENCSR322BYN Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal 2 2485 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/e494a3b3-2952-4423-bdfb-e839de25f832/ENCFF180JWH.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322BYN Signal\ track wgEncodeReg4Epigenetics_ENCFF180JWH\ type bigWig\ visibility full\ LensEpithelialCellsDonor1_CNhs12342_ctss_fwd LensEpithelialCellsD1+ bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward 0 2485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor1_CNhs12342_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_tpm_fwd LensEpithelialCellsD1+ bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward 1 2485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor1_CNhs12342_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF641LQV ENCSR304NTV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BCL3 BCL3 peaks 4 2486 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/17293a29-6b5f-4334-9477-187514e70eb8/ENCFF641LQV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BCL3 BCL3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304NTV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF641LQV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF458LAZ ENCSR322FGP Peak bigBed 5 Colonic mucosa tissue female adult 56 years H3K4me3 peak 4 2486 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8f46b0d0-30dc-4fda-a287-3365ad690861/ENCFF458LAZ.bigBed\ color 255,0,0\ longLabel Colonic mucosa tissue female adult 56 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322FGP Peak\ track wgEncodeReg4Epigenetics_ENCFF458LAZ\ type bigBed 5\ visibility squish\ LensEpithelialCellsDonor1_CNhs12342_ctss_rev LensEpithelialCellsD1- bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse 0 2486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor1_CNhs12342_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor1_CNhs12342_tpm_rev LensEpithelialCellsD1- bigWig Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse 1 2486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor1.CNhs12342.11529-119I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor1_CNhs12342_11529-119I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11529-119I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor1_CNhs12342_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11529-119I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF949VUG ENCSR304NTV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BCL3 BCL3 ENCSR304NTV signal 2 2487 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/20123a26-5199-4fe1-8ba4-7c6352231345/ENCFF949VUG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BCL3 BCL3 ENCSR304NTV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304NTV Signal\ track wgEncodeReg4TfChip_ENCFF949VUG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF349BGH ENCSR322FGP Signal bigWig Colonic mucosa tissue female adult 56 years H3K4me3 signal 2 2487 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c2b141ea-cfb0-4337-8e7d-d7548d7b875d/ENCFF349BGH.bigWig\ color 255,0,0\ longLabel Colonic mucosa tissue female adult 56 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322FGP Signal\ track wgEncodeReg4Epigenetics_ENCFF349BGH\ type bigWig\ visibility full\ LensEpithelialCellsDonor2_CNhs12568_ctss_fwd LensEpithelialCellsD2+ bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward 0 2487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor2_CNhs12568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_tpm_fwd LensEpithelialCellsD2+ bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward 1 2487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor2_CNhs12568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF277RMX ENCSR304XUZ Peak bigBed 5 Breast epithelium tissue female adult (53 years) CTCF peaks 4 2488 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ea1d5c03-f89d-45c3-a20c-c15bf4f93d17/ENCFF277RMX.bigBed\ labelFields none\ longLabel Breast epithelium tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304XUZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF277RMX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF135NTE ENCSR322MTA Peak bigBed 5 Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak 4 2488 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/9e500db8-4079-4c7f-a840-1d5c41d94a58/ENCFF135NTE.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322MTA Peak\ track wgEncodeReg4Epigenetics_ENCFF135NTE\ type bigBed 5\ visibility squish\ LensEpithelialCellsDonor2_CNhs12568_ctss_rev LensEpithelialCellsD2- bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse 0 2488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor2_CNhs12568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor2_CNhs12568_tpm_rev LensEpithelialCellsD2- bigWig Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse 1 2488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor2.CNhs12568.11609-120I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor2_CNhs12568_11609-120I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11609-120I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor2_CNhs12568_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11609-120I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF249SYO ENCSR304XUZ Signal bigWig Breast epithelium tissue female adult (53 years) CTCF ENCSR304XUZ signal 2 2489 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/fc6db2c9-ad97-4d9e-90c3-a9d7ba55a74c/ENCFF249SYO.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (53 years) CTCF ENCSR304XUZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR304XUZ Signal\ track wgEncodeReg4TfChip_ENCFF249SYO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF937IOV ENCSR322MTA Signal bigWig Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal 2 2489 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/9ada7a09-8e08-4794-86dc-c151b9432e8b/ENCFF937IOV.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322MTA Signal\ track wgEncodeReg4Epigenetics_ENCFF937IOV\ type bigWig\ visibility full\ LensEpithelialCellsDonor3_CNhs12572_ctss_fwd LensEpithelialCellsD3+ bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward 0 2489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor3_CNhs12572_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_tpm_fwd LensEpithelialCellsD3+ bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward 1 2489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track LensEpithelialCellsDonor3_CNhs12572_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF536CFY ENCSR306HAG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4 SNAPC4 peaks 4 2490 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/38a71564-2225-4328-9055-8558e6295c56/ENCFF536CFY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4 SNAPC4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR306HAG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF536CFY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF872INX ENCSR322SBN Peak bigBed 5 HG03457 ATAC peak 4 2490 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/5fbf7683-1503-4f6d-96c6-a19d9b5d815c/ENCFF872INX.bigBed\ color 2,199,185\ longLabel HG03457 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322SBN Peak\ track wgEncodeReg4Epigenetics_ENCFF872INX\ type bigBed 5\ visibility squish\ LensEpithelialCellsDonor3_CNhs12572_ctss_rev LensEpithelialCellsD3- bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse 0 2490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LensEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor3_CNhs12572_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ LensEpithelialCellsDonor3_CNhs12572_tpm_rev LensEpithelialCellsD3- bigWig Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse 1 2490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Lens%20Epithelial%20Cells%2c%20donor3.CNhs12572.11690-122I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Lens Epithelial Cells, donor3_CNhs12572_11690-122I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11690-122I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LensEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track LensEpithelialCellsDonor3_CNhs12572_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11690-122I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF358KYT ENCSR306HAG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4 SNAPC4 ENCSR306HAG signal 2 2491 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/c198cf7f-0041-4c7f-a8be-d5147852bae9/ENCFF358KYT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC4 SNAPC4 ENCSR306HAG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR306HAG Signal\ track wgEncodeReg4TfChip_ENCFF358KYT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477DEN ENCSR322SBN Signal bigWig HG03457 ATAC signal 2 2491 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/015eb41b-e405-4ada-9f69-c49cc4abd4eb/ENCFF477DEN.bigWig\ color 2,199,185\ longLabel HG03457 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322SBN Signal\ track wgEncodeReg4Epigenetics_ENCFF477DEN\ type bigWig\ visibility full\ MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_fwd MacrophageMonocyteD1+ bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward 0 2491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_fwd MacrophageMonocyteD1+ bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward 1 2491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF418WHE ENCSR307CKC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF680 ZNF680 peaks 4 2492 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/20b15883-26bd-49dd-8610-18d102c44309/ENCFF418WHE.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF680 ZNF680 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR307CKC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF418WHE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF286VNR ENCSR322TJD Peak bigBed 5 Aorta tissue female adult 30 years H3K27ac peak 4 2492 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/46d850e8-1dec-4ac0-aa30-261563df1c9c/ENCFF286VNR.bigBed\ color 181,145,0\ longLabel Aorta tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322TJD Peak\ track wgEncodeReg4Epigenetics_ENCFF286VNR\ type bigBed 5\ visibility squish\ MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_rev MacrophageMonocyteD1- bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse 0 2492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor1_CNhs10861_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_rev MacrophageMonocyteD1- bigWig Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse 1 2492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor1.CNhs10861.11232-116C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor1_CNhs10861_11232-116C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11232-116C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor1_CNhs10861_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11232-116C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF636THM ENCSR307CKC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF680 ZNF680 ENCSR307CKC signal 2 2493 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/6f2d342d-e0a2-4cf2-8bc3-b754499d5a66/ENCFF636THM.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF680 ZNF680 ENCSR307CKC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR307CKC Signal\ track wgEncodeReg4TfChip_ENCFF636THM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF126LKO ENCSR322TJD Signal bigWig Aorta tissue female adult 30 years H3K27ac signal 2 2493 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/01ff0ecc-521d-4cdb-8eac-fe63dfc29b30/ENCFF126LKO.bigWig\ color 181,145,0\ longLabel Aorta tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322TJD Signal\ track wgEncodeReg4Epigenetics_ENCFF126LKO\ type bigWig\ visibility full\ MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_fwd MacrophageMonocyteD2+ bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward 0 2493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_fwd MacrophageMonocyteD2+ bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward 1 2493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF438KTE ENCSR307PFP Peak bigBed 5 Body of pancreas tissue male adult (37 years) CTCF peaks 4 2494 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/91758025-6f24-4690-bbf1-a444b4a67a71/ENCFF438KTE.bigBed\ labelFields none\ longLabel Body of pancreas tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR307PFP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF438KTE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF325ZAX ENCSR322VEH Peak bigBed 5 IgD-negative memory B cell H3K4me3 peak 4 2494 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/2ebc9128-8e6b-49d0-80ef-631a3ca65360/ENCFF325ZAX.bigBed\ color 255,0,0\ longLabel IgD-negative memory B cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322VEH Peak\ track wgEncodeReg4Epigenetics_ENCFF325ZAX\ type bigBed 5\ visibility squish\ MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_rev MacrophageMonocyteD2- bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse 0 2494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor2_CNhs11899_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_rev MacrophageMonocyteD2- bigWig Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse 1 2494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor2.CNhs11899.11313-117C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor2_CNhs11899_11313-117C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11313-117C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor2_CNhs11899_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11313-117C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF739KGP ENCSR307PFP Signal bigWig Body of pancreas tissue male adult (37 years) CTCF ENCSR307PFP signal 2 2495 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/5b764a46-958e-4145-a453-a662c9c7b60a/ENCFF739KGP.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue male adult (37 years) CTCF ENCSR307PFP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR307PFP Signal\ track wgEncodeReg4TfChip_ENCFF739KGP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF617BRH ENCSR322VEH Signal bigWig IgD-negative memory B cell H3K4me3 signal 2 2495 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/69fd447a-b974-466a-ab2a-9ed4ebeb1fd5/ENCFF617BRH.bigWig\ color 255,0,0\ longLabel IgD-negative memory B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR322VEH Signal\ track wgEncodeReg4Epigenetics_ENCFF617BRH\ type bigWig\ visibility full\ MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_fwd MacrophageMonocyteD3+ bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward 0 2495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_fwd MacrophageMonocyteD3+ bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward 1 2495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF877SFI ENCSR310NYI Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA2 peaks 4 2496 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/3858be0c-5be4-4360-955c-32098cd0007f/ENCFF877SFI.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR310NYI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF877SFI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF131VSY ENCSR323LVJ Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak 4 2496 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/72c9a50f-8cbf-4fb2-b838-3a161a3128cb/ENCFF131VSY.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323LVJ Peak\ track wgEncodeReg4Epigenetics_ENCFF131VSY\ type bigBed 5\ visibility squish\ MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_rev MacrophageMonocyteD3- bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse 0 2496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MacrophageMonocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor3_CNhs12003_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_rev MacrophageMonocyteD3- bigWig Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse 1 2496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Macrophage%20-%20monocyte%20derived%2c%20donor3.CNhs12003.11389-118C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Macrophage - monocyte derived, donor3_CNhs12003_11389-118C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11389-118C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MacrophageMonocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MacrophageMonocyteDerivedDonor3_CNhs12003_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11389-118C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF691RDY ENCSR310NYI Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA2 ENCSR310NYI signal 2 2497 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/37f44972-6fa9-4614-b150-8583717ee1ea/ENCFF691RDY.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA2 ENCSR310NYI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR310NYI Signal\ track wgEncodeReg4TfChip_ENCFF691RDY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF301LEA ENCSR323LVJ Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal 2 2497 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/5db9b80e-80cd-4066-9e66-d5f88e8a4038/ENCFF301LEA.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323LVJ Signal\ track wgEncodeReg4Epigenetics_ENCFF301LEA\ type bigWig\ visibility full\ MallassezderivedCellsDonor2_CNhs13550_ctss_fwd MallassezCellsD2+ bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward 0 2497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor2_CNhs13550_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_tpm_fwd MallassezCellsD2+ bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward 1 2497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor2_CNhs13550_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF970YZO ENCSR310OZS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A1 NR5A1 peaks 4 2498 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/b8ec2d5e-13fe-4312-b624-d4fd14d33179/ENCFF970YZO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A1 NR5A1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR310OZS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF970YZO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF606UPM ENCSR323PWV Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase peak 4 2498 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/7ab7312d-7312-44b7-9c15-92080bfe87d4/ENCFF606UPM.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323PWV Peak\ track wgEncodeReg4Epigenetics_ENCFF606UPM\ type bigBed 5\ visibility squish\ MallassezderivedCellsDonor2_CNhs13550_ctss_rev MallassezCellsD2- bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse 0 2498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor2_CNhs13550_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor2_CNhs13550_tpm_rev MallassezCellsD2- bigWig Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse 1 2498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor2.CNhs13550.11929-125I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor2_CNhs13550_11929-125I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11929-125I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor2_CNhs13550_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11929-125I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF053GNQ ENCSR310OZS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A1 NR5A1 ENCSR310OZS signal 2 2499 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/56150ad3-1720-45b2-af61-be39fec9405f/ENCFF053GNQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A1 NR5A1 ENCSR310OZS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR310OZS Signal\ track wgEncodeReg4TfChip_ENCFF053GNQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF410WKA ENCSR323PWV Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase signal 2 2499 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/27f1efec-b670-475b-ba7c-1bb53997eead/ENCFF410WKA.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323PWV Signal\ track wgEncodeReg4Epigenetics_ENCFF410WKA\ type bigWig\ visibility full\ MallassezderivedCellsDonor3_CNhs13551_ctss_fwd MallassezCellsD3+ bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward 0 2499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor3_CNhs13551_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_tpm_fwd MallassezCellsD3+ bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward 1 2499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MallassezderivedCellsDonor3_CNhs13551_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF890VSY ENCSR313BMV Peak bigBed 5 Sigmoid colon tissue female adult (53 years) EP300 peaks 4 2500 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/35933cee-f255-4d0e-ab61-4eec4c5ad053/ENCFF890VSY.bigBed\ labelFields none\ longLabel Sigmoid colon tissue female adult (53 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR313BMV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF890VSY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF589XWQ ENCSR323TXQ Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase peak 4 2500 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/16f7706b-39f7-481e-a9e6-8293887730b5/ENCFF589XWQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323TXQ Peak\ track wgEncodeReg4Epigenetics_ENCFF589XWQ\ type bigBed 5\ visibility squish\ MallassezderivedCellsDonor3_CNhs13551_ctss_rev MallassezCellsD3- bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse 0 2500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MallassezCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor3_CNhs13551_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ MallassezderivedCellsDonor3_CNhs13551_tpm_rev MallassezCellsD3- bigWig Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse 1 2500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mallassez-derived%20cells%2c%20donor3.CNhs13551.11930-125I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mallassez-derived cells, donor3_CNhs13551_11930-125I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11930-125I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MallassezCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MallassezderivedCellsDonor3_CNhs13551_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11930-125I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF914KXT ENCSR313BMV Signal bigWig Sigmoid colon tissue female adult (53 years) EP300 ENCSR313BMV signal 2 2501 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/0d13e95a-cc17-4fdb-a1b7-0df6bf8ebd76/ENCFF914KXT.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (53 years) EP300 ENCSR313BMV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR313BMV Signal\ track wgEncodeReg4TfChip_ENCFF914KXT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF421EVN ENCSR323TXQ Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase signal 2 2501 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7d22e828-1d9b-4e47-a634-5862f48de1ef/ENCFF421EVN.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-23 for 48 hours, 100 ng/mL Interleukin-1b for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323TXQ Signal\ track wgEncodeReg4Epigenetics_ENCFF421EVN\ type bigWig\ visibility full\ MammaryEpithelialCellDonor1_CNhs11077_ctss_fwd MammaryEpithelialCellD1+ bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward 0 2501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor1_CNhs11077_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_tpm_fwd MammaryEpithelialCellD1+ bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward 1 2501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor1_CNhs11077_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF626SSV ENCSR313MMD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263 ZNF263 peaks 4 2502 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/de713782-ef2c-429a-89e6-c058025ac087/ENCFF626SSV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263 ZNF263 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR313MMD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF626SSV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF083YZE ENCSR323UTX Peak bigBed 5 Upper lobe of left lung tissue female adult 51 years DNase peak 4 2502 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/4870044e-1a33-44ee-8604-5036579eb6e4/ENCFF083YZE.bigBed\ color 6,218,147\ labelFields none\ longLabel Upper lobe of left lung tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323UTX Peak\ track wgEncodeReg4Epigenetics_ENCFF083YZE\ type bigBed 5\ visibility squish\ MammaryEpithelialCellDonor1_CNhs11077_ctss_rev MammaryEpithelialCellD1- bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse 0 2502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor1_CNhs11077_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor1_CNhs11077_tpm_rev MammaryEpithelialCellD1- bigWig Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse 1 2502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor1.CNhs11077.11273-116H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor1_CNhs11077_11273-116H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11273-116H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor1_CNhs11077_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11273-116H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF021QSO ENCSR313MMD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263 ZNF263 ENCSR313MMD signal 2 2503 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/840c3bc1-6432-4abf-b3c5-707af63736a2/ENCFF021QSO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263 ZNF263 ENCSR313MMD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR313MMD Signal\ track wgEncodeReg4TfChip_ENCFF021QSO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF279ZNA ENCSR323UTX Signal bigWig Upper lobe of left lung tissue female adult 51 years DNase signal 2 2503 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/63dd6fdb-79bd-4585-a0ed-78ebec814597/ENCFF279ZNA.bigWig\ color 6,218,147\ longLabel Upper lobe of left lung tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323UTX Signal\ track wgEncodeReg4Epigenetics_ENCFF279ZNA\ type bigWig\ visibility full\ MammaryEpithelialCellDonor2_CNhs11382_ctss_fwd MammaryEpithelialCellD2+ bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward 0 2503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor2_CNhs11382_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_tpm_fwd MammaryEpithelialCellD2+ bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward 1 2503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor2_CNhs11382_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF015CFL ENCSR313VZG Peak bigBed 5 HepG2 FIP1L1 peaks 4 2504 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/1bdca931-fcd1-48b3-ae02-7c8a941119f3/ENCFF015CFL.bigBed\ labelFields none\ longLabel HepG2 FIP1L1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR313VZG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF015CFL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF134CXL ENCSR323XBZ Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K27ac peak 4 2504 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/d523820a-ea8c-488d-b2cb-fc03219d4a30/ENCFF134CXL.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323XBZ Peak\ track wgEncodeReg4Epigenetics_ENCFF134CXL\ type bigBed 5\ visibility squish\ MammaryEpithelialCellDonor2_CNhs11382_ctss_rev MammaryEpithelialCellD2- bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse 0 2504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor2_CNhs11382_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor2_CNhs11382_tpm_rev MammaryEpithelialCellD2- bigWig Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse 1 2504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor2.CNhs11382.11350-117G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor2_CNhs11382_11350-117G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11350-117G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor2_CNhs11382_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11350-117G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF018EUF ENCSR313VZG Signal bigWig HepG2 FIP1L1 ENCSR313VZG signal 2 2505 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/7441e439-2c2d-46a9-af6d-05dc9f86a23f/ENCFF018EUF.bigWig\ color 137,152,82\ longLabel HepG2 FIP1L1 ENCSR313VZG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR313VZG Signal\ track wgEncodeReg4TfChip_ENCFF018EUF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF225DSH ENCSR323XBZ Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K27ac signal 2 2505 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/bbbe062c-16b2-4ca5-b3ef-cd1c00ba605a/ENCFF225DSH.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323XBZ Signal\ track wgEncodeReg4Epigenetics_ENCFF225DSH\ type bigWig\ visibility full\ MammaryEpithelialCellDonor3_CNhs12032_ctss_fwd MammaryEpithelialCellD3+ bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward 0 2505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor3_CNhs12032_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_tpm_fwd MammaryEpithelialCellD3+ bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward 1 2505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MammaryEpithelialCellDonor3_CNhs12032_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF017KRM ENCSR314BBS Peak bigBed 5 K562 stably expressing PTTG1 PTTG1 peaks 4 2506 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/e65ed5fc-9ad3-4e59-9608-849ff2a77b4b/ENCFF017KRM.bigBed\ labelFields none\ longLabel K562 stably expressing PTTG1 PTTG1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR314BBS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF017KRM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF767XJQ ENCSR323ZAP Peak bigBed 5 Heart right ventricle tissue female adult 56 years CTCF peak 4 2506 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/732dd330-f187-422c-89e2-1d6650a07222/ENCFF767XJQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart right ventricle tissue female adult 56 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323ZAP Peak\ track wgEncodeReg4Epigenetics_ENCFF767XJQ\ type bigBed 5\ visibility squish\ MammaryEpithelialCellDonor3_CNhs12032_ctss_rev MammaryEpithelialCellD3- bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse 0 2506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MammaryEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor3_CNhs12032_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ MammaryEpithelialCellDonor3_CNhs12032_tpm_rev MammaryEpithelialCellD3- bigWig Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse 1 2506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mammary%20Epithelial%20Cell%2c%20donor3.CNhs12032.11422-118F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mammary Epithelial Cell, donor3_CNhs12032_11422-118F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11422-118F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MammaryEpithelialCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MammaryEpithelialCellDonor3_CNhs12032_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11422-118F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF987AAS ENCSR314BBS Signal bigWig K562 stably expressing PTTG1 PTTG1 ENCSR314BBS signal 2 2507 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/8587e220-e8d7-4358-b0f3-bce3a5d247e0/ENCFF987AAS.bigWig\ color 254,75,173\ longLabel K562 stably expressing PTTG1 PTTG1 ENCSR314BBS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR314BBS Signal\ track wgEncodeReg4TfChip_ENCFF987AAS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF257ODJ ENCSR323ZAP Signal bigWig Heart right ventricle tissue female adult 56 years CTCF signal 2 2507 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/d0b28b0e-1ac6-40e1-b472-b46cb7c211bd/ENCFF257ODJ.bigWig\ color 0,176,240\ longLabel Heart right ventricle tissue female adult 56 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR323ZAP Signal\ track wgEncodeReg4Epigenetics_ENCFF257ODJ\ type bigWig\ visibility full\ MastCellDonor1_CNhs12566_ctss_fwd MastCellD1+ bigWig Mast cell, donor1_CNhs12566_11563-120D6_forward 0 2507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor1_CNhs12566_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_tpm_fwd MastCellD1+ bigWig Mast cell, donor1_CNhs12566_11563-120D6_forward 1 2507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor1_CNhs12566_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF671UYF ENCSR315JJE Peak bigBed 5 HepG2 HNRNPL peaks 4 2508 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/9d3d77bd-92ba-438d-8dcc-990ea6f263fd/ENCFF671UYF.bigBed\ labelFields none\ longLabel HepG2 HNRNPL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315JJE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF671UYF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF635CUU ENCSR324IEM Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K27ac peak 4 2508 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/618af2fd-c130-4b16-931c-c6a16456426c/ENCFF635CUU.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324IEM Peak\ track wgEncodeReg4Epigenetics_ENCFF635CUU\ type bigBed 5\ visibility squish\ MastCellDonor1_CNhs12566_ctss_rev MastCellD1- bigWig Mast cell, donor1_CNhs12566_11563-120D6_reverse 0 2508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor1_CNhs12566_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ MastCellDonor1_CNhs12566_tpm_rev MastCellD1- bigWig Mast cell, donor1_CNhs12566_11563-120D6_reverse 1 2508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor1.CNhs12566.11563-120D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor1_CNhs12566_11563-120D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11563-120D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor1_CNhs12566_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11563-120D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF502QWU ENCSR315JJE Signal bigWig HepG2 HNRNPL ENCSR315JJE signal 2 2509 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8b3c3fd7-f896-42ba-b1c4-615d51fe6236/ENCFF502QWU.bigWig\ color 137,152,82\ longLabel HepG2 HNRNPL ENCSR315JJE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315JJE Signal\ track wgEncodeReg4TfChip_ENCFF502QWU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF116PKI ENCSR324IEM Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K27ac signal 2 2509 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/fa053274-732c-482d-9e7f-533f16ea4c06/ENCFF116PKI.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324IEM Signal\ track wgEncodeReg4Epigenetics_ENCFF116PKI\ type bigWig\ visibility full\ MastCellDonor2_CNhs12594_ctss_fwd MastCellD2+ bigWig Mast cell, donor2_CNhs12594_11565-120D8_forward 0 2509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor2_CNhs12594_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_tpm_fwd MastCellD2+ bigWig Mast cell, donor2_CNhs12594_11565-120D8_forward 1 2509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor2_CNhs12594_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF223HIG ENCSR315NAC Peak bigBed 5 LNCAP CTCF peaks 4 2510 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/399096fd-0d12-4363-99eb-0b06ff1c3d17/ENCFF223HIG.bigBed\ labelFields none\ longLabel LNCAP CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315NAC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF223HIG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF278VHJ ENCSR324JDC Peak bigBed 5 Endocrine pancreas tissue male adult 45 years H3K27ac peak 4 2510 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/9cc2c6a1-0b15-4486-af75-a9d576aeffba/ENCFF278VHJ.bigBed\ color 181,145,0\ longLabel Endocrine pancreas tissue male adult 45 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324JDC Peak\ track wgEncodeReg4Epigenetics_ENCFF278VHJ\ type bigBed 5\ visibility squish\ MastCellDonor2_CNhs12594_ctss_rev MastCellD2- bigWig Mast cell, donor2_CNhs12594_11565-120D8_reverse 0 2510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor2_CNhs12594_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ MastCellDonor2_CNhs12594_tpm_rev MastCellD2- bigWig Mast cell, donor2_CNhs12594_11565-120D8_reverse 1 2510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor2.CNhs12594.11565-120D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor2_CNhs12594_11565-120D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11565-120D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor2_CNhs12594_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11565-120D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF857BSR ENCSR315NAC Signal bigWig LNCAP CTCF ENCSR315NAC signal 2 2511 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d4b61550-31fc-4603-918e-7fbcf8fda5c8/ENCFF857BSR.bigWig\ color 140,140,140\ longLabel LNCAP CTCF ENCSR315NAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315NAC Signal\ track wgEncodeReg4TfChip_ENCFF857BSR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF237BCW ENCSR324JDC Signal bigWig Endocrine pancreas tissue male adult 45 years H3K27ac signal 2 2511 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/b127c0d6-c9dc-4909-9b33-e4668c8d03e4/ENCFF237BCW.bigWig\ color 181,145,0\ longLabel Endocrine pancreas tissue male adult 45 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324JDC Signal\ track wgEncodeReg4Epigenetics_ENCFF237BCW\ type bigWig\ visibility full\ MastCellDonor3_CNhs12593_ctss_fwd MastCellD3+ bigWig Mast cell, donor3_CNhs12593_11566-120D9_forward 0 2511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor3_CNhs12593_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_tpm_fwd MastCellD3+ bigWig Mast cell, donor3_CNhs12593_11566-120D9_forward 1 2511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor3_CNhs12593_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF429USX ENCSR315NNL Peak bigBed 5 K562 CHAMP1 peaks 4 2512 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/28c2ff1c-ce1b-4ad5-aac9-b4e1f6535408/ENCFF429USX.bigBed\ labelFields none\ longLabel K562 CHAMP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315NNL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF429USX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF650NAP ENCSR324NVG Peak bigBed 5 Posterior vena cava tissue female adult 47 years DNase peak 4 2512 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/8cfde02c-369e-419b-8c0f-d8abca351768/ENCFF650NAP.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior vena cava tissue female adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324NVG Peak\ track wgEncodeReg4Epigenetics_ENCFF650NAP\ type bigBed 5\ visibility squish\ MastCellDonor3_CNhs12593_ctss_rev MastCellD3- bigWig Mast cell, donor3_CNhs12593_11566-120D9_reverse 0 2512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor3_CNhs12593_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ MastCellDonor3_CNhs12593_tpm_rev MastCellD3- bigWig Mast cell, donor3_CNhs12593_11566-120D9_reverse 1 2512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor3.CNhs12593.11566-120D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor3_CNhs12593_11566-120D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11566-120D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor3_CNhs12593_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11566-120D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF122VBA ENCSR315NNL Signal bigWig K562 CHAMP1 ENCSR315NNL signal 2 2513 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/933dedc6-7721-41ff-924e-8e8283e711f5/ENCFF122VBA.bigWig\ color 254,75,173\ longLabel K562 CHAMP1 ENCSR315NNL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315NNL Signal\ track wgEncodeReg4TfChip_ENCFF122VBA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF851OYI ENCSR324NVG Signal bigWig Posterior vena cava tissue female adult 47 years DNase signal 2 2513 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/520b7661-c8a4-430a-8018-127d21fc670c/ENCFF851OYI.bigWig\ color 6,218,147\ longLabel Posterior vena cava tissue female adult 47 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324NVG Signal\ track wgEncodeReg4Epigenetics_ENCFF851OYI\ type bigWig\ visibility full\ MastCellDonor4_CNhs12592_ctss_fwd MastCellD4+ bigWig Mast cell, donor4_CNhs12592_11567-120E1_forward 0 2513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor4_CNhs12592_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_tpm_fwd MastCellD4+ bigWig Mast cell, donor4_CNhs12592_11567-120E1_forward 1 2513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellDonor4_CNhs12592_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF525EUW ENCSR315VYZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A PHF21A peaks 4 2514 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/df9c5413-fbf4-4ce0-9409-37c1c8baadfc/ENCFF525EUW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A PHF21A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315VYZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF525EUW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF216XCN ENCSR324OTS Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 39 years treated with 100 ng/mL Interleukin-2 for 4 hours DNase peak 4 2514 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/fc7f783b-4a57-4a38-ab6f-ee2666ac323e/ENCFF216XCN.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with 100 ng/mL Interleukin-2 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324OTS Peak\ track wgEncodeReg4Epigenetics_ENCFF216XCN\ type bigBed 5\ visibility squish\ MastCellDonor4_CNhs12592_ctss_rev MastCellD4- bigWig Mast cell, donor4_CNhs12592_11567-120E1_reverse 0 2514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor4_CNhs12592_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ MastCellDonor4_CNhs12592_tpm_rev MastCellD4- bigWig Mast cell, donor4_CNhs12592_11567-120E1_reverse 1 2514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20donor4.CNhs12592.11567-120E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, donor4_CNhs12592_11567-120E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11567-120E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellDonor4_CNhs12592_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11567-120E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF371KXS ENCSR315VYZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A PHF21A ENCSR315VYZ signal 2 2515 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/fcebd380-c459-4762-bdb8-4bf14209260d/ENCFF371KXS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF21A PHF21A ENCSR315VYZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR315VYZ Signal\ track wgEncodeReg4TfChip_ENCFF371KXS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF813XWD ENCSR324OTS Signal bigWig CD4-positive, alpha-beta T cell female adult 39 years treated with 100 ng/mL Interleukin-2 for 4 hours DNase signal 2 2515 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/e89b82b3-76e1-4aa5-8222-1363f982cb7a/ENCFF813XWD.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with 100 ng/mL Interleukin-2 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324OTS Signal\ track wgEncodeReg4Epigenetics_ENCFF813XWD\ type bigWig\ visibility full\ MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_fwd MastCellExpD5+ bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward 0 2515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_fwd MastCellExpD5+ bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward 1 2515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF044DWL ENCSR318LVG Peak bigBed 5 MCF-7 ZBTB40 peaks 4 2516 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/f5bfa577-2b5d-411c-8e0e-479ada334c94/ENCFF044DWL.bigBed\ labelFields none\ longLabel MCF-7 ZBTB40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR318LVG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF044DWL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF218ZCB ENCSR324SGE Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase peak 4 2516 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c1766960-2575-4835-9e1d-83f48e560b87/ENCFF218ZCB.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324SGE Peak\ track wgEncodeReg4Epigenetics_ENCFF218ZCB\ type bigBed 5\ visibility squish\ MastCellExpandedDonor5_CNhs13924_ctss_fwd MastCellExpD5+ bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward 0 2516 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor5_CNhs13924_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_tpm_fwd MastCellExpD5+ bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward 1 2516 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor5_CNhs13924_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF670HVB ENCSR318LVG Signal bigWig MCF-7 ZBTB40 ENCSR318LVG signal 2 2517 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/35a3c8a2-d64b-46c7-a074-f4ea1cd3fb9b/ENCFF670HVB.bigWig\ color 65,171,173\ longLabel MCF-7 ZBTB40 ENCSR318LVG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR318LVG Signal\ track wgEncodeReg4TfChip_ENCFF670HVB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF765JZP ENCSR324SGE Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase signal 2 2517 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/756c41ec-0029-448e-a385-646d992546fe/ENCFF765JZP.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324SGE Signal\ track wgEncodeReg4Epigenetics_ENCFF765JZP\ type bigWig\ visibility full\ MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_rev MastCellExpD5- bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse 0 2517 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_rev MastCellExpD5- bigWig Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse 1 2517 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor5.CNhs13925.11940-126A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor5_CNhs13925_11940-126A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11940-126A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor5_CNhs13925_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11940-126A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF509WYZ ENCSR321MSF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB21 ZBTB21 peaks 4 2518 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/446cf88a-7b8e-4294-9b21-9520a95e951f/ENCFF509WYZ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB21 ZBTB21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR321MSF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF509WYZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF650VUB ENCSR324ZNP Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K27ac peak 4 2518 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/c027da29-bf8e-4284-a57d-bebca3504e48/ENCFF650VUB.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324ZNP Peak\ track wgEncodeReg4Epigenetics_ENCFF650VUB\ type bigBed 5\ visibility squish\ MastCellExpandedDonor5_CNhs13924_ctss_rev MastCellExpD5- bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse 0 2518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor5_CNhs13924_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor5_CNhs13924_tpm_rev MastCellExpD5- bigWig Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse 1 2518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor5.CNhs13924.11939-126A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor5_CNhs13924_11939-126A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11939-126A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor5_CNhs13924_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11939-126A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF834NQD ENCSR321MSF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB21 ZBTB21 ENCSR321MSF signal 2 2519 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/205d7de2-54d1-4194-a54d-0ef17795260b/ENCFF834NQD.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB21 ZBTB21 ENCSR321MSF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR321MSF Signal\ track wgEncodeReg4TfChip_ENCFF834NQD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF729LUC ENCSR324ZNP Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K27ac signal 2 2519 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/7424dfa3-c89c-4564-b26a-933be08506f2/ENCFF729LUC.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR324ZNP Signal\ track wgEncodeReg4Epigenetics_ENCFF729LUC\ type bigWig\ visibility full\ MastCellExpandedDonor8_CNhs13926_ctss_fwd MastCellExpD8+ bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward 0 2519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor8_CNhs13926_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_fwd MastCellExpD8+ bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward 1 2519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF088FIR ENCSR321OAA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO1 FOXO1 peaks 4 2520 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/5b784812-4e77-44a8-8846-329b9e234ca7/ENCFF088FIR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO1 FOXO1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR321OAA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF088FIR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF164KZS ENCSR325FWM Peak bigBed 5 Adrenal gland tissue female adult 41 years DNase peak 4 2520 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/f6bbaaed-b7c5-44e5-826b-af5b3abea568/ENCFF164KZS.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR325FWM Peak\ track wgEncodeReg4Epigenetics_ENCFF164KZS\ type bigBed 5\ visibility squish\ MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_fwd MastCellExpD8+ bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward 0 2520 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_tpm_fwd MastCellExpD8+ bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward 1 2520 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellExpandedDonor8_CNhs13926_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF774JXC ENCSR321OAA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO1 FOXO1 ENCSR321OAA signal 2 2521 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/8f4a7d28-7a72-443f-b38e-68f6a4b83b2c/ENCFF774JXC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO1 FOXO1 ENCSR321OAA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR321OAA Signal\ track wgEncodeReg4TfChip_ENCFF774JXC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF237KCK ENCSR325FWM Signal bigWig Adrenal gland tissue female adult 41 years DNase signal 2 2521 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/0b29344f-4f86-47e3-b001-ef63cf987708/ENCFF237KCK.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR325FWM Signal\ track wgEncodeReg4Epigenetics_ENCFF237KCK\ type bigWig\ visibility full\ MastCellExpandedDonor8_CNhs13926_ctss_rev MastCellExpD8- bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse 0 2521 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor8_CNhs13926_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_rev MastCellExpD8- bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse 1 2521 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF367ZWV ENCSR321VGW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF1 ELF1 peaks 4 2522 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/7ccdc7bc-5165-4425-9e8a-f0db32a7ec44/ENCFF367ZWV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF1 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR321VGW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF367ZWV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF225RVB ENCSR326ESM Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours ATAC peak 4 2522 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/41a5ecc2-50f3-4455-a9cb-489d6b816959/ENCFF225RVB.bigBed\ color 2,199,185\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326ESM Peak\ track wgEncodeReg4Epigenetics_ENCFF225RVB\ type bigBed 5\ visibility squish\ MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_rev MastCellExpD8- bigWig Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse 0 2522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%20and%20stimulated%2c%20donor8.CNhs13927.11942-126A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded and stimulated, donor8_CNhs13927_11942-126A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11942-126A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedAndStimulatedDonor8_CNhs13927_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11942-126A7\ urlLabel FANTOM5 Details:\ MastCellExpandedDonor8_CNhs13926_tpm_rev MastCellExpD8- bigWig Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse 1 2522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%2c%20expanded%2c%20donor8.CNhs13926.11941-126A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell, expanded, donor8_CNhs13926_11941-126A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11941-126A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellExpD8-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellExpandedDonor8_CNhs13926_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11941-126A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF409LJA ENCSR321VGW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF1 ELF1 ENCSR321VGW signal 2 2523 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/0a309162-d17d-4165-b3b8-7eb3e61f01b0/ENCFF409LJA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF1 ELF1 ENCSR321VGW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR321VGW Signal\ track wgEncodeReg4TfChip_ENCFF409LJA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF021KYU ENCSR326ESM Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours ATAC signal 2 2523 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/0702dd70-61b2-4dd3-9425-8df152643087/ENCFF021KYU.bigWig\ color 2,199,185\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours, 100 ng/mL Interleukin-15 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326ESM Signal\ track wgEncodeReg4Epigenetics_ENCFF021KYU\ type bigWig\ visibility full\ MastCellStimulatedDonor1_CNhs11073_ctss_fwd MastCellStimulatedD1+ bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward 0 2523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellStimulatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellStimulatedDonor1_CNhs11073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_tpm_fwd MastCellStimulatedD1+ bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward 1 2523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellStimulatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MastCellStimulatedDonor1_CNhs11073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF975RXS ENCSR322CFO Peak bigBed 5 K562 ZEB2 peaks 4 2524 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/afd2b048-270a-4cab-8545-ccc0a1b8664f/ENCFF975RXS.bigBed\ labelFields none\ longLabel K562 ZEB2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR322CFO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF975RXS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF295GSL ENCSR326JGI Peak bigBed 5 Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 peak 4 2524 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/55d7588c-6519-47c9-94a3-60fb5864b752/ENCFF295GSL.bigBed\ color 255,0,0\ longLabel Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326JGI Peak\ track wgEncodeReg4Epigenetics_ENCFF295GSL\ type bigBed 5\ visibility squish\ MastCellStimulatedDonor1_CNhs11073_ctss_rev MastCellStimulatedD1- bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse 0 2524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MastCellStimulatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellStimulatedDonor1_CNhs11073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ MastCellStimulatedDonor1_CNhs11073_tpm_rev MastCellStimulatedD1- bigWig Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse 1 2524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mast%20cell%20-%20stimulated%2c%20donor1.CNhs11073.11487-119E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mast cell - stimulated, donor1_CNhs11073_11487-119E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11487-119E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MastCellStimulatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MastCellStimulatedDonor1_CNhs11073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11487-119E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF191SLC ENCSR322CFO Signal bigWig K562 ZEB2 ENCSR322CFO signal 2 2525 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/e73aba61-13d2-4310-b435-954972f94446/ENCFF191SLC.bigWig\ color 254,75,173\ longLabel K562 ZEB2 ENCSR322CFO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR322CFO Signal\ track wgEncodeReg4TfChip_ENCFF191SLC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF207RGC ENCSR326JGI Signal bigWig Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 signal 2 2525 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/87c1e9c3-66ed-4f6c-ba39-f77dba80991c/ENCFF207RGC.bigWig\ color 255,0,0\ longLabel Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326JGI Signal\ track wgEncodeReg4Epigenetics_ENCFF207RGC\ type bigWig\ visibility full\ MelanocyteDarkDonor1_CNhs12591_ctss_fwd MelanocyteDarkD1+ bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward 0 2525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor1_CNhs12591_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_tpm_fwd MelanocyteDarkD1+ bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward 1 2525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor1_CNhs12591_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF302JAZ ENCSR322JEO Peak bigBed 5 Sigmoid colon tissue female adult (53 years) POLR2A peaks 4 2526 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/cb850d16-2992-4db1-8180-1d9dc2e2f81f/ENCFF302JAZ.bigBed\ labelFields none\ longLabel Sigmoid colon tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR322JEO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF302JAZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF048CEZ ENCSR326TID Peak bigBed 5 Naive B cell DNase peak 4 2526 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/f17f7c03-9604-4b54-a2cb-00e4585c8bdf/ENCFF048CEZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive B cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326TID Peak\ track wgEncodeReg4Epigenetics_ENCFF048CEZ\ type bigBed 5\ visibility squish\ MelanocyteDarkDonor1_CNhs12591_ctss_rev MelanocyteDarkD1- bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse 0 2526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor1_CNhs12591_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor1_CNhs12591_tpm_rev MelanocyteDarkD1- bigWig Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse 1 2526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor1.CNhs12591.11502-119F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor1_CNhs12591_11502-119F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11502-119F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor1_CNhs12591_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11502-119F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF091IEW ENCSR322JEO Signal bigWig Sigmoid colon tissue female adult (53 years) POLR2A ENCSR322JEO signal 2 2527 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/d0801107-f2fe-4fd8-af4f-d3743211b3f6/ENCFF091IEW.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (53 years) POLR2A ENCSR322JEO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR322JEO Signal\ track wgEncodeReg4TfChip_ENCFF091IEW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF580UOH ENCSR326TID Signal bigWig Naive B cell DNase signal 2 2527 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/b2ab8738-49f9-42e3-8852-1232ac7f81ea/ENCFF580UOH.bigWig\ color 6,218,147\ longLabel Naive B cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326TID Signal\ track wgEncodeReg4Epigenetics_ENCFF580UOH\ type bigWig\ visibility full\ MelanocyteDarkDonor2_CNhs12346_ctss_fwd MelanocyteDarkD2+ bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward 0 2527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor2_CNhs12346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_tpm_fwd MelanocyteDarkD2+ bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward 1 2527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor2_CNhs12346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF763OCV ENCSR322ULL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7B ZBTB7B peaks 4 2528 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/8371bcd0-b0f0-4fc0-be15-98dd8ec93072/ENCFF763OCV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7B ZBTB7B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR322ULL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF763OCV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF334JJX ENCSR326YRW Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 2528 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/94f36c5e-b07a-491b-b50b-c0b74ec23467/ENCFF334JJX.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326YRW Peak\ track wgEncodeReg4Epigenetics_ENCFF334JJX\ type bigBed 5\ visibility squish\ MelanocyteDarkDonor2_CNhs12346_ctss_rev MelanocyteDarkD2- bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse 0 2528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor2_CNhs12346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor2_CNhs12346_tpm_rev MelanocyteDarkD2- bigWig Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse 1 2528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor2.CNhs12346.11582-120F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor2_CNhs12346_11582-120F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11582-120F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor2_CNhs12346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11582-120F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF085VRT ENCSR322ULL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7B ZBTB7B ENCSR322ULL signal 2 2529 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/367bf41a-7cdc-41bd-b80a-7562213b5b0e/ENCFF085VRT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7B ZBTB7B ENCSR322ULL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR322ULL Signal\ track wgEncodeReg4TfChip_ENCFF085VRT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF750UAD ENCSR326YRW Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 2529 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/43b944eb-97b8-4838-850c-bd6ed2b9efb0/ENCFF750UAD.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326YRW Signal\ track wgEncodeReg4Epigenetics_ENCFF750UAD\ type bigWig\ visibility full\ MelanocyteDarkDonor3_CNhs12570_ctss_fwd MelanocyteDarkD3+ bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward 0 2529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor3_CNhs12570_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_tpm_fwd MelanocyteDarkD3+ bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward 1 2529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteDarkDonor3_CNhs12570_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF767XJQ ENCSR323ZAP Peak bigBed 5 Heart right ventricle tissue female adult (56 years) CTCF peaks 4 2530 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/732dd330-f187-422c-89e2-1d6650a07222/ENCFF767XJQ.bigBed\ labelFields none\ longLabel Heart right ventricle tissue female adult (56 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR323ZAP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF767XJQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF084YLD ENCSR326YSR Peak bigBed 5 Natural killer cell female adult 41 years H3K4me3 peak 4 2530 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/d28c089e-a7b5-4ba0-9eb9-04b36bd2b32d/ENCFF084YLD.bigBed\ color 255,0,0\ longLabel Natural killer cell female adult 41 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326YSR Peak\ track wgEncodeReg4Epigenetics_ENCFF084YLD\ type bigBed 5\ visibility squish\ MelanocyteDarkDonor3_CNhs12570_ctss_rev MelanocyteDarkD3- bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse 0 2530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteDarkD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor3_CNhs12570_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ MelanocyteDarkDonor3_CNhs12570_tpm_rev MelanocyteDarkD3- bigWig Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse 1 2530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20dark%2c%20donor3.CNhs12570.11663-122F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - dark, donor3_CNhs12570_11663-122F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11663-122F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteDarkD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteDarkDonor3_CNhs12570_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11663-122F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF257ODJ ENCSR323ZAP Signal bigWig Heart right ventricle tissue female adult (56 years) CTCF ENCSR323ZAP signal 2 2531 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/d0b28b0e-1ac6-40e1-b472-b46cb7c211bd/ENCFF257ODJ.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (56 years) CTCF ENCSR323ZAP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR323ZAP Signal\ track wgEncodeReg4TfChip_ENCFF257ODJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF029NUW ENCSR326YSR Signal bigWig Natural killer cell female adult 41 years H3K4me3 signal 2 2531 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/d9e56b62-bdcd-46d7-80c7-130f29db12b7/ENCFF029NUW.bigWig\ color 255,0,0\ longLabel Natural killer cell female adult 41 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR326YSR Signal\ track wgEncodeReg4Epigenetics_ENCFF029NUW\ type bigWig\ visibility full\ MelanocyteLightDonor1_CNhs11303_ctss_fwd MelanocyteLightD1+ bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_forward 0 2531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor1_CNhs11303_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_tpm_fwd MelanocyteLightD1+ bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_forward 1 2531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor1_CNhs11303_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF875BDB ENCSR324LTM Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OSR2 OSR2 peaks 4 2532 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/617e504d-9ee3-4534-8f70-38a8bfbe9ee9/ENCFF875BDB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OSR2 OSR2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR324LTM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF875BDB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF575VJE ENCSR327XTS Peak bigBed 5 Colonic mucosa tissue female adult 73 years H3K27ac peak 4 2532 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3e154daa-0db7-4c29-b3d8-0600e294eef5/ENCFF575VJE.bigBed\ color 181,145,0\ longLabel Colonic mucosa tissue female adult 73 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR327XTS Peak\ track wgEncodeReg4Epigenetics_ENCFF575VJE\ type bigBed 5\ visibility squish\ MelanocyteLightDonor1_CNhs11303_ctss_rev MelanocyteLightD1- bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse 0 2532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor1_CNhs11303_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor1_CNhs11303_tpm_rev MelanocyteLightD1- bigWig Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse 1 2532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor1.CNhs11303.11274-116H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor1_CNhs11303_11274-116H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11274-116H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor1_CNhs11303_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11274-116H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF612QEP ENCSR324LTM Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OSR2 OSR2 ENCSR324LTM signal 2 2533 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/ebce03f7-22b3-4637-a4c4-520f4b04a58a/ENCFF612QEP.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OSR2 OSR2 ENCSR324LTM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR324LTM Signal\ track wgEncodeReg4TfChip_ENCFF612QEP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF650EZM ENCSR327XTS Signal bigWig Colonic mucosa tissue female adult 73 years H3K27ac signal 2 2533 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5a28a13a-e3b1-4152-8801-031f72c3cb28/ENCFF650EZM.bigWig\ color 181,145,0\ longLabel Colonic mucosa tissue female adult 73 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR327XTS Signal\ track wgEncodeReg4Epigenetics_ENCFF650EZM\ type bigWig\ visibility full\ MelanocyteLightDonor2_CNhs11383_ctss_fwd MelanocyteLightD2+ bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_forward 0 2533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor2_CNhs11383_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_tpm_fwd MelanocyteLightD2+ bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_forward 1 2533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor2_CNhs11383_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF537QZV ENCSR324RCI Peak bigBed 5 Liver tissue female child (4 years) FOXA1 peaks 4 2534 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/c5e54c2c-7b74-4341-9cf7-5baa8f96bfda/ENCFF537QZV.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) FOXA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR324RCI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF537QZV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF978XYZ ENCSR328JGW Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF ATAC peak 4 2534 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/b43f0bc5-2433-4cdf-a222-6a7111c583a4/ENCFF978XYZ.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR328JGW Peak\ track wgEncodeReg4Epigenetics_ENCFF978XYZ\ type bigBed 5\ visibility squish\ MelanocyteLightDonor2_CNhs11383_ctss_rev MelanocyteLightD2- bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse 0 2534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor2_CNhs11383_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor2_CNhs11383_tpm_rev MelanocyteLightD2- bigWig Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse 1 2534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor2.CNhs11383.11351-117H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor2_CNhs11383_11351-117H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11351-117H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor2_CNhs11383_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11351-117H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF169JJZ ENCSR324RCI Signal bigWig Liver tissue female child (4 years) FOXA1 ENCSR324RCI signal 2 2535 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/0885bb98-b7a4-4ea3-921f-f736b816ed27/ENCFF169JJZ.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) FOXA1 ENCSR324RCI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR324RCI Signal\ track wgEncodeReg4TfChip_ENCFF169JJZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF129VSO ENCSR328JGW Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF ATAC signal 2 2535 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/723792ee-c1a6-4f45-bca3-88bde1f6f914/ENCFF129VSO.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR328JGW Signal\ track wgEncodeReg4Epigenetics_ENCFF129VSO\ type bigWig\ visibility full\ MelanocyteLightDonor3_CNhs12033_ctss_fwd MelanocyteLightD3+ bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_forward 0 2535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor3_CNhs12033_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_tpm_fwd MelanocyteLightD3+ bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_forward 1 2535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MelanocyteLightDonor3_CNhs12033_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF131SMT ENCSR325QLX Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF8 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF8 peaks 4 2536 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/467446b3-0bbe-49b6-915e-76441cc2ed08/ENCFF131SMT.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF8 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR325QLX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF131SMT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF895BCX ENCSR328UMC Peak bigBed 5 Hematopoietic multipotent progenitor cell DNase peak 4 2536 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/1dd0e970-a869-4402-a8cf-057fc6003db7/ENCFF895BCX.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR328UMC Peak\ track wgEncodeReg4Epigenetics_ENCFF895BCX\ type bigBed 5\ visibility squish\ MelanocyteLightDonor3_CNhs12033_ctss_rev MelanocyteLightD3- bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse 0 2536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteLightD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor3_CNhs12033_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ MelanocyteLightDonor3_CNhs12033_tpm_rev MelanocyteLightD3- bigWig Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse 1 2536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%20-%20light%2c%20donor3.CNhs12033.11423-118G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte - light, donor3_CNhs12033_11423-118G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11423-118G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteLightD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MelanocyteLightDonor3_CNhs12033_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11423-118G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF939IHV ENCSR325QLX Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF8 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF8 ENCSR325QLX signal 2 2537 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/c5c4f180-fbd7-47af-9265-8ea010de653d/ENCFF939IHV.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF8 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF8 ENCSR325QLX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR325QLX Signal\ track wgEncodeReg4TfChip_ENCFF939IHV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF567PRD ENCSR328UMC Signal bigWig Hematopoietic multipotent progenitor cell DNase signal 2 2537 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/b2ed24b3-ba83-4555-a59a-f77389519d7e/ENCFF567PRD.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR328UMC Signal\ track wgEncodeReg4Epigenetics_ENCFF567PRD\ type bigWig\ visibility full\ MeningealCellsDonor1_CNhs11320_ctss_fwd MeningealCellsD1+ bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_forward 0 2537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor1_CNhs11320_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_tpm_fwd MeningealCellsD1+ bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_forward 1 2537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor1_CNhs11320_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF513ENO ENCSR325RLL Peak bigBed 5 K562 POLR2B peaks 4 2538 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/fb724a18-a0b9-4159-a92b-8f9dcbe71988/ENCFF513ENO.bigBed\ labelFields none\ longLabel K562 POLR2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR325RLL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF513ENO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF883QSX ENCSR329FAP Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase peak 4 2538 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/4f6247b9-b2ae-4595-a076-2b5cf50b57f8/ENCFF883QSX.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329FAP Peak\ track wgEncodeReg4Epigenetics_ENCFF883QSX\ type bigBed 5\ visibility squish\ MeningealCellsDonor1_CNhs11320_ctss_rev MeningealCellsD1- bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse 0 2538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor1_CNhs11320_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ MeningealCellsDonor1_CNhs11320_tpm_rev MeningealCellsD1- bigWig Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse 1 2538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor1.CNhs11320.11493-119E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor1_CNhs11320_11493-119E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11493-119E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor1_CNhs11320_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11493-119E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF331WPU ENCSR325RLL Signal bigWig K562 POLR2B ENCSR325RLL signal 2 2539 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/b3653c6a-cfa5-459e-860c-815efd69d958/ENCFF331WPU.bigWig\ color 254,75,173\ longLabel K562 POLR2B ENCSR325RLL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR325RLL Signal\ track wgEncodeReg4TfChip_ENCFF331WPU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF554VOU ENCSR329FAP Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase signal 2 2539 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/fd03a51c-342f-4d51-b37b-2d670570adcc/ENCFF554VOU.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329FAP Signal\ track wgEncodeReg4Epigenetics_ENCFF554VOU\ type bigWig\ visibility full\ MeningealCellsDonor2_CNhs12080_ctss_fwd MeningealCellsD2+ bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_forward 0 2539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor2_CNhs12080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_tpm_fwd MeningealCellsD2+ bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_forward 1 2539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor2_CNhs12080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF590SZW ENCSR325VYA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF557 ZNF557 peaks 4 2540 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2259c3b1-04b7-45da-822d-96c867757656/ENCFF590SZW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF557 ZNF557 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR325VYA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF590SZW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF297KPC ENCSR329FHR Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak 4 2540 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/9c0870f6-0e31-4cca-8a03-bf0834122f7a/ENCFF297KPC.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329FHR Peak\ track wgEncodeReg4Epigenetics_ENCFF297KPC\ type bigBed 5\ visibility squish\ MeningealCellsDonor2_CNhs12080_ctss_rev MeningealCellsD2- bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse 0 2540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor2_CNhs12080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor2_CNhs12080_tpm_rev MeningealCellsD2- bigWig Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse 1 2540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor2.CNhs12080.11573-120E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor2_CNhs12080_11573-120E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11573-120E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor2_CNhs12080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11573-120E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF752BOF ENCSR325VYA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF557 ZNF557 ENCSR325VYA signal 2 2541 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/6a0dcc02-25bb-4797-96d4-738650127550/ENCFF752BOF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF557 ZNF557 ENCSR325VYA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR325VYA Signal\ track wgEncodeReg4TfChip_ENCFF752BOF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF463EIN ENCSR329FHR Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 2541 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/217167f8-424b-4367-ba24-85a58cd7e381/ENCFF463EIN.bigWig\ color 6,218,147\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329FHR Signal\ track wgEncodeReg4Epigenetics_ENCFF463EIN\ type bigWig\ visibility full\ MeningealCellsDonor3_CNhs12731_ctss_fwd MeningealCellsD3+ bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_forward 0 2541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor3_CNhs12731_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_tpm_fwd MeningealCellsD3+ bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_forward 1 2541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MeningealCellsDonor3_CNhs12731_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF870VDS ENCSR326AQV Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXS1 FOXS1 peaks 4 2542 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/7a770ed5-4cf5-4f86-91af-d1d913dcdc9d/ENCFF870VDS.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXS1 FOXS1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR326AQV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF870VDS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF402DHH ENCSR329FXI Peak bigBed 5 Skeletal muscle tissue tissue female adult 72 years H3K27ac peak 4 2542 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/a49d21c8-e0ff-49c8-9064-e65e8c397774/ENCFF402DHH.bigBed\ color 181,145,0\ longLabel Skeletal muscle tissue tissue female adult 72 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329FXI Peak\ track wgEncodeReg4Epigenetics_ENCFF402DHH\ type bigBed 5\ visibility squish\ MeningealCellsDonor3_CNhs12731_ctss_rev MeningealCellsD3- bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse 0 2542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MeningealCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor3_CNhs12731_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ MeningealCellsDonor3_CNhs12731_tpm_rev MeningealCellsD3- bigWig Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse 1 2542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Meningeal%20Cells%2c%20donor3.CNhs12731.11654-122E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Meningeal Cells, donor3_CNhs12731_11654-122E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11654-122E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MeningealCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MeningealCellsDonor3_CNhs12731_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11654-122E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF434ZMN ENCSR326AQV Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXS1 FOXS1 ENCSR326AQV signal 2 2543 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/5377d850-c97b-44fc-b96d-9c39d0fe0e42/ENCFF434ZMN.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXS1 FOXS1 ENCSR326AQV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR326AQV Signal\ track wgEncodeReg4TfChip_ENCFF434ZMN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF962HWM ENCSR329FXI Signal bigWig Skeletal muscle tissue tissue female adult 72 years H3K27ac signal 2 2543 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/99e1383d-6e28-460c-b2c3-89c410e52fd5/ENCFF962HWM.bigWig\ color 181,145,0\ longLabel Skeletal muscle tissue tissue female adult 72 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329FXI Signal\ track wgEncodeReg4Epigenetics_ENCFF962HWM\ type bigWig\ visibility full\ MesothelialCellsDonor1_CNhs10850_ctss_fwd MesothelialCellsD1+ bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward 0 2543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor1_CNhs10850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_tpm_fwd MesothelialCellsD1+ bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward 1 2543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor1_CNhs10850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF949UAN ENCSR327RFM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAF1 PAF1 peaks 4 2544 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/cad81f15-8389-4c0a-8e8e-529c61b8fd0b/ENCFF949UAN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAF1 PAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR327RFM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF949UAN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF267VHH ENCSR329KRE Peak bigBed 5 Middle frontal area 46 tissue female adult 89 years CTCF peak 4 2544 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/cefdeca0-3eba-4e86-8b81-ac49e706ad25/ENCFF267VHH.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 89 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329KRE Peak\ track wgEncodeReg4Epigenetics_ENCFF267VHH\ type bigBed 5\ visibility squish\ MesothelialCellsDonor1_CNhs10850_ctss_rev MesothelialCellsD1- bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse 0 2544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor1_CNhs10850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor1_CNhs10850_tpm_rev MesothelialCellsD1- bigWig Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse 1 2544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor1.CNhs10850.11247-116E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor1_CNhs10850_11247-116E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11247-116E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor1_CNhs10850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11247-116E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF825ZDL ENCSR327RFM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAF1 PAF1 ENCSR327RFM signal 2 2545 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/9927ff9b-6ecc-44db-9bb3-e12abf523dbb/ENCFF825ZDL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAF1 PAF1 ENCSR327RFM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR327RFM Signal\ track wgEncodeReg4TfChip_ENCFF825ZDL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF450HJC ENCSR329KRE Signal bigWig Middle frontal area 46 tissue female adult 89 years CTCF signal 2 2545 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/98540c49-2db3-40bf-9488-397c9fa165c3/ENCFF450HJC.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 89 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR329KRE Signal\ track wgEncodeReg4Epigenetics_ENCFF450HJC\ type bigWig\ visibility full\ MesothelialCellsDonor3_CNhs12012_ctss_fwd MesothelialCellsD3+ bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward 0 2545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor3_CNhs12012_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_tpm_fwd MesothelialCellsD3+ bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward 1 2545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesothelialCellsDonor3_CNhs12012_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF784SLD ENCSR328SUD Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF335 ZNF335 peaks 4 2546 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f811797e-84cf-41d2-a7f0-ea340f3523cf/ENCFF784SLD.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF335 ZNF335 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR328SUD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF784SLD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF794MBT ENCSR330JXM Peak bigBed 5 Brain organoid male adult 53 years, 90 days post differentiation DNase peak 4 2546 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/d92b309e-cea2-450c-b39e-c372a56da4d8/ENCFF794MBT.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain organoid male adult 53 years, 90 days post differentiation DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330JXM Peak\ track wgEncodeReg4Epigenetics_ENCFF794MBT\ type bigBed 5\ visibility squish\ MesothelialCellsDonor3_CNhs12012_ctss_rev MesothelialCellsD3- bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse 0 2546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MesothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor3_CNhs12012_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ MesothelialCellsDonor3_CNhs12012_tpm_rev MesothelialCellsD3- bigWig Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse 1 2546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesothelial%20Cells%2c%20donor3.CNhs12012.11402-118D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesothelial Cells, donor3_CNhs12012_11402-118D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11402-118D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MesothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesothelialCellsDonor3_CNhs12012_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11402-118D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF195VEO ENCSR328SUD Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF335 ZNF335 ENCSR328SUD signal 2 2547 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/6b71fef8-e3ff-406d-a8b4-72094edfa74c/ENCFF195VEO.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF335 ZNF335 ENCSR328SUD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR328SUD Signal\ track wgEncodeReg4TfChip_ENCFF195VEO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF157RLF ENCSR330JXM Signal bigWig Brain organoid male adult 53 years, 90 days post differentiation DNase signal 2 2547 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/678be0e5-53c3-4762-a8ce-3d2f73f8bd0e/ENCFF157RLF.bigWig\ color 6,218,147\ longLabel Brain organoid male adult 53 years, 90 days post differentiation DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330JXM Signal\ track wgEncodeReg4Epigenetics_ENCFF157RLF\ type bigWig\ visibility full\ MigratoryLangerhansCellsDonor1_CNhs13535_ctss_fwd MigratoryLangerhansCellsD1+ bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward 0 2547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor1_CNhs13535_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_tpm_fwd MigratoryLangerhansCellsD1+ bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward 1 2547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor1_CNhs13535_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF267VHH ENCSR329KRE Peak bigBed 5 Middle frontal area 46 tissue female adult (89 years) CTCF peaks 4 2548 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/cefdeca0-3eba-4e86-8b81-ac49e706ad25/ENCFF267VHH.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (89 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR329KRE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF267VHH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF138WQY ENCSR330LFP Peak bigBed 5 Posterior cingulate gyrus tissue female adult 82 years DNase peak 4 2548 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/cbd21a1e-a7b7-49cf-b004-73d9a265b351/ENCFF138WQY.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330LFP Peak\ track wgEncodeReg4Epigenetics_ENCFF138WQY\ type bigBed 5\ visibility squish\ MigratoryLangerhansCellsDonor1_CNhs13535_ctss_rev MigratoryLangerhansCellsD1- bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse 0 2548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor1_CNhs13535_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor1_CNhs13535_tpm_rev MigratoryLangerhansCellsD1- bigWig migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse 1 2548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor1.CNhs13535.11901-125F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor1_CNhs13535_11901-125F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11901-125F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor1_CNhs13535_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11901-125F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF450HJC ENCSR329KRE Signal bigWig Middle frontal area 46 tissue female adult (89 years) CTCF ENCSR329KRE signal 2 2549 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/98540c49-2db3-40bf-9488-397c9fa165c3/ENCFF450HJC.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (89 years) CTCF ENCSR329KRE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR329KRE Signal\ track wgEncodeReg4TfChip_ENCFF450HJC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF394GBX ENCSR330LFP Signal bigWig Posterior cingulate gyrus tissue female adult 82 years DNase signal 2 2549 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/2d8f6a03-a771-4ec3-8cdb-ae7e7c1a0cc3/ENCFF394GBX.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330LFP Signal\ track wgEncodeReg4Epigenetics_ENCFF394GBX\ type bigWig\ visibility full\ MigratoryLangerhansCellsDonor2_CNhs13536_ctss_fwd MigratoryLangerhansCellsD2+ bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward 0 2549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor2_CNhs13536_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_tpm_fwd MigratoryLangerhansCellsD2+ bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward 1 2549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor2_CNhs13536_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF142TOQ ENCSR330ADN Peak bigBed 5 MCF-7 DDX20 peaks 4 2550 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/c1a8f635-53af-4d34-b780-caa73e3a9aec/ENCFF142TOQ.bigBed\ labelFields none\ longLabel MCF-7 DDX20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR330ADN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF142TOQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF534WGH ENCSR330OUU Peak bigBed 5 T-cell male adult 42 years H3K4me3 peak 4 2550 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/a3ea4935-0654-4ed1-8fd7-4286e6299397/ENCFF534WGH.bigBed\ color 255,0,0\ longLabel T-cell male adult 42 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330OUU Peak\ track wgEncodeReg4Epigenetics_ENCFF534WGH\ type bigBed 5\ visibility squish\ MigratoryLangerhansCellsDonor2_CNhs13536_ctss_rev MigratoryLangerhansCellsD2- bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse 0 2550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor2_CNhs13536_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor2_CNhs13536_tpm_rev MigratoryLangerhansCellsD2- bigWig migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse 1 2550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor2.CNhs13536.11902-125F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor2_CNhs13536_11902-125F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11902-125F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor2_CNhs13536_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11902-125F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF163XTE ENCSR330ADN Signal bigWig MCF-7 DDX20 ENCSR330ADN signal 2 2551 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/05ed8e42-d40d-41e1-9270-fb430085c57b/ENCFF163XTE.bigWig\ color 65,171,173\ longLabel MCF-7 DDX20 ENCSR330ADN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR330ADN Signal\ track wgEncodeReg4TfChip_ENCFF163XTE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF863YFO ENCSR330OUU Signal bigWig T-cell male adult 42 years H3K4me3 signal 2 2551 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/58b33cae-f5fc-4fb7-a314-97d27a4b1584/ENCFF863YFO.bigWig\ color 255,0,0\ longLabel T-cell male adult 42 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330OUU Signal\ track wgEncodeReg4Epigenetics_ENCFF863YFO\ type bigWig\ visibility full\ MigratoryLangerhansCellsDonor3_CNhs13547_ctss_fwd MigratoryLangerhansCellsD3+ bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward 0 2551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor3_CNhs13547_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_tpm_fwd MigratoryLangerhansCellsD3+ bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward 1 2551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MigratoryLangerhansCellsDonor3_CNhs13547_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF948EED ENCSR330ZBO Peak bigBed 5 Ovary tissue female adult 59 years DNase peak 4 2552 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/962497b4-0d1e-4fdd-9974-92a771e4e132/ENCFF948EED.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330ZBO Peak\ track wgEncodeReg4Epigenetics_ENCFF948EED\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF815TQL ENCSR331BDJ Peak bigBed 5 K562 NKRF peaks 4 2552 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/44637b28-2490-4e26-8ebe-8cd0f585f208/ENCFF815TQL.bigBed\ labelFields none\ longLabel K562 NKRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331BDJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF815TQL\ type bigBed 5\ useScore 1\ visibility squish\ MigratoryLangerhansCellsDonor3_CNhs13547_ctss_rev MigratoryLangerhansCellsD3- bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse 0 2552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MigratoryLangerhansCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor3_CNhs13547_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ MigratoryLangerhansCellsDonor3_CNhs13547_tpm_rev MigratoryLangerhansCellsD3- bigWig migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse 1 2552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/migratory%20langerhans%20cells%2c%20donor3.CNhs13547.11903-125F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel migratory langerhans cells, donor3_CNhs13547_11903-125F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11903-125F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MigratoryLangerhansCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MigratoryLangerhansCellsDonor3_CNhs13547_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11903-125F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF635IQN ENCSR330ZBO Signal bigWig Ovary tissue female adult 59 years DNase signal 2 2553 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/8c492c99-7d69-4b16-afa5-9d4bff9f7a04/ENCFF635IQN.bigWig\ color 6,218,147\ longLabel Ovary tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR330ZBO Signal\ track wgEncodeReg4Epigenetics_ENCFF635IQN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF323QAI ENCSR331BDJ Signal bigWig K562 NKRF ENCSR331BDJ signal 2 2553 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/72b5328c-d050-4d0c-b728-928f84d7a213/ENCFF323QAI.bigWig\ color 254,75,173\ longLabel K562 NKRF ENCSR331BDJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331BDJ Signal\ track wgEncodeReg4TfChip_ENCFF323QAI\ type bigWig\ visibility full\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_fwd MpcAdiposeD1+ bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward 0 2553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_fwd MpcAdiposeD1+ bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward 1 2553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF648EZG ENCSR331GDC Peak bigBed 5 K562 ZBTB11 peaks 4 2554 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/d95c3e63-6d23-4dfc-82fc-16bf36c26e35/ENCFF648EZG.bigBed\ labelFields none\ longLabel K562 ZBTB11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331GDC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF648EZG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF982IVE ENCSR331GZV Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 2554 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/6fdb24e9-2173-4180-9e5f-e8d4edbb24ac/ENCFF982IVE.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR331GZV Peak\ track wgEncodeReg4Epigenetics_ENCFF982IVE\ type bigBed 5\ visibility squish\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_rev MpcAdiposeD1- bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse 0 2554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_rev MpcAdiposeD1- bigWig mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse 1 2554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor1.CNhs12363.11747-123G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor1_CNhs12363_11747-123G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11747-123G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor1_CNhs12363_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11747-123G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF625DNM ENCSR331GDC Signal bigWig K562 ZBTB11 ENCSR331GDC signal 2 2555 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/f9abb290-6318-4723-95be-3eb0a027bc99/ENCFF625DNM.bigWig\ color 254,75,173\ longLabel K562 ZBTB11 ENCSR331GDC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331GDC Signal\ track wgEncodeReg4TfChip_ENCFF625DNM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF457FEX ENCSR331GZV Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal 2 2555 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/3fce9b9d-1dad-4d5a-b773-6ac07318269f/ENCFF457FEX.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR331GZV Signal\ track wgEncodeReg4Epigenetics_ENCFF457FEX\ type bigWig\ visibility full\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_fwd MpcAdiposeD2+ bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward 0 2555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_fwd MpcAdiposeD2+ bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward 1 2555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF872TWR ENCSR331HPA Peak bigBed 5 GM12878 GABPA peaks 4 2556 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/d72eb522-3981-4f7e-9f35-8c5fffd7c23a/ENCFF872TWR.bigBed\ labelFields none\ longLabel GM12878 GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331HPA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF872TWR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF533AKS ENCSR331JFZ Peak bigBed 5 HG03575 ATAC peak 4 2556 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/1e89eb59-cf8b-4114-bd19-109e760a27d0/ENCFF533AKS.bigBed\ color 2,199,185\ longLabel HG03575 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR331JFZ Peak\ track wgEncodeReg4Epigenetics_ENCFF533AKS\ type bigBed 5\ visibility squish\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_rev MpcAdiposeD2- bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse 0 2556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_rev MpcAdiposeD2- bigWig mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse 1 2556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor2.CNhs12364.11748-123G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor2_CNhs12364_11748-123G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11748-123G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor2_CNhs12364_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11748-123G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF959CKU ENCSR331HPA Signal bigWig GM12878 GABPA ENCSR331HPA signal 2 2557 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/d2130ae0-90ae-4e59-9eea-d3fb2559faa6/ENCFF959CKU.bigWig\ color 254,75,173\ longLabel GM12878 GABPA ENCSR331HPA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331HPA Signal\ track wgEncodeReg4TfChip_ENCFF959CKU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF474BDV ENCSR331JFZ Signal bigWig HG03575 ATAC signal 2 2557 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/0270560e-93ec-47f8-aebe-753cecf7d11d/ENCFF474BDV.bigWig\ color 2,199,185\ longLabel HG03575 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR331JFZ Signal\ track wgEncodeReg4Epigenetics_ENCFF474BDV\ type bigWig\ visibility full\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_fwd MpcAdiposeD3+ bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward 0 2557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_fwd MpcAdiposeD3+ bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward 1 2557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF905YHF ENCSR331OGX Peak bigBed 5 Thyroid gland tissue female adult (53 years) CTCF peaks 4 2558 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1df7fb4d-c39c-4f8b-9eb9-7f3226521018/ENCFF905YHF.bigBed\ labelFields none\ longLabel Thyroid gland tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331OGX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF905YHF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF782FOT ENCSR331WMS Peak bigBed 5 Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak 4 2558 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/7aec8135-007c-4fb8-9e0b-7508e97fb8d4/ENCFF782FOT.bigBed\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR331WMS Peak\ track wgEncodeReg4Epigenetics_ENCFF782FOT\ type bigBed 5\ visibility squish\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_rev MpcAdiposeD3- bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse 0 2558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_rev MpcAdiposeD3- bigWig mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse 1 2558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20adipose%2c%20donor3.CNhs12365.11749-123G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - adipose, donor3_CNhs12365_11749-123G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11749-123G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellAdiposeDonor3_CNhs12365_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11749-123G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF452ZPE ENCSR331OGX Signal bigWig Thyroid gland tissue female adult (53 years) CTCF ENCSR331OGX signal 2 2559 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/315e152f-77a3-4981-b940-7af227cff4cc/ENCFF452ZPE.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (53 years) CTCF ENCSR331OGX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331OGX Signal\ track wgEncodeReg4TfChip_ENCFF452ZPE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF958HFA ENCSR331WMS Signal bigWig Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal 2 2559 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/1ea667a4-dcc2-42de-a8a1-f8386d6ed8f9/ENCFF958HFA.bigWig\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR331WMS Signal\ track wgEncodeReg4Epigenetics_ENCFF958HFA\ type bigWig\ visibility full\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_fwd MpcBoneMarrowD1+ bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward 0 2559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_fwd MpcBoneMarrowD1+ bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward 1 2559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF576ERP ENCSR331ORD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 peaks 4 2560 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/d1836e53-1aaa-41af-a3c1-69d974232b5c/ENCFF576ERP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331ORD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF576ERP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF909OLY ENCSR332BSB Peak bigBed 5 Right kidney tissue male embryo 87 days DNase peak 4 2560 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/88683d26-1bf4-4d02-8bac-f1566864e0b8/ENCFF909OLY.bigBed\ color 6,218,147\ labelFields none\ longLabel Right kidney tissue male embryo 87 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332BSB Peak\ track wgEncodeReg4Epigenetics_ENCFF909OLY\ type bigBed 5\ visibility squish\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_rev MpcBoneMarrowD1- bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse 0 2560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_rev MpcBoneMarrowD1- bigWig mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse 1 2560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor1.CNhs12366.11750-123G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor1_CNhs12366_11750-123G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11750-123G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor1_CNhs12366_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11750-123G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4TfChip_ENCFF848MFJ ENCSR331ORD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 ENCSR331ORD signal 2 2561 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/8e964aa6-ff38-49c8-8d5a-ea31c304d309/ENCFF848MFJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB1 CREB1 ENCSR331ORD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR331ORD Signal\ track wgEncodeReg4TfChip_ENCFF848MFJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF833OSP ENCSR332BSB Signal bigWig Right kidney tissue male embryo 87 days DNase signal 2 2561 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/860044ac-1121-42ee-9082-c45604f655db/ENCFF833OSP.bigWig\ color 6,218,147\ longLabel Right kidney tissue male embryo 87 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332BSB Signal\ track wgEncodeReg4Epigenetics_ENCFF833OSP\ type bigWig\ visibility full\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_fwd MpcBoneMarrowD2+ bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward 0 2561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_fwd MpcBoneMarrowD2+ bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward 1 2561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF869RPR ENCSR332BVN Peak bigBed 5 Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 peak 4 2562 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/4757a5fb-f72f-4286-927e-26c535b6f5bf/ENCFF869RPR.bigBed\ color 255,0,0\ longLabel Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332BVN Peak\ track wgEncodeReg4Epigenetics_ENCFF869RPR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF655XMZ ENCSR332EYT Peak bigBed 5 GM12878 STAT1 peaks 4 2562 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/d8466c15-519e-439a-9dc3-c7a730962fd2/ENCFF655XMZ.bigBed\ labelFields none\ longLabel GM12878 STAT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR332EYT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF655XMZ\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_rev MpcBoneMarrowD2- bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse 0 2562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_rev MpcBoneMarrowD2- bigWig mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse 1 2562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor2.CNhs12367.11751-123G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor2_CNhs12367_11751-123G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11751-123G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor2_CNhs12367_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11751-123G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF081XPP ENCSR332BVN Signal bigWig Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 signal 2 2563 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/370b518a-0b36-4349-b3d5-1f52d498489a/ENCFF081XPP.bigWig\ color 255,0,0\ longLabel Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332BVN Signal\ track wgEncodeReg4Epigenetics_ENCFF081XPP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF116UVP ENCSR332EYT Signal bigWig GM12878 STAT1 ENCSR332EYT signal 2 2563 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/3b0e708a-c085-4716-b495-0267ac09e368/ENCFF116UVP.bigWig\ color 254,75,173\ longLabel GM12878 STAT1 ENCSR332EYT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR332EYT Signal\ track wgEncodeReg4TfChip_ENCFF116UVP\ type bigWig\ visibility full\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_fwd MpcBoneMarrowD3+ bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward 0 2563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_fwd MpcBoneMarrowD3+ bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward 1 2563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF199PSQ ENCSR332HAD Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 56 years DNase peak 4 2564 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/e302567b-48a7-47ea-bdcf-26b696106836/ENCFF199PSQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 56 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332HAD Peak\ track wgEncodeReg4Epigenetics_ENCFF199PSQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF311KBD ENCSR332WTG Peak bigBed 5 Middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 2564 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ff88f54d-0e97-4929-952e-49d431a4bc61/ENCFF311KBD.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR332WTG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF311KBD\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_rev MpcBoneMarrowD3- bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse 0 2564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_rev MpcBoneMarrowD3- bigWig mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse 1 2564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20bone%20marrow%2c%20donor3.CNhs13098.11840-124H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - bone marrow, donor3_CNhs13098_11840-124H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11840-124H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellBoneMarrowDonor3_CNhs13098_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11840-124H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF201XEO ENCSR332HAD Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 56 years DNase signal 2 2565 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/dd9da6d5-269a-41f1-a485-f22e40efd60c/ENCFF201XEO.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 56 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332HAD Signal\ track wgEncodeReg4Epigenetics_ENCFF201XEO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF554FTX ENCSR332WTG Signal bigWig Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR332WTG signal 2 2565 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/47382960-80d2-4ee5-93fb-d348bfcae64e/ENCFF554FTX.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR332WTG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR332WTG Signal\ track wgEncodeReg4TfChip_ENCFF554FTX\ type bigWig\ visibility full\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_fwd MpcCardiacD1+ bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward 0 2565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_fwd MpcCardiacD1+ bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward 1 2565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF311KBD ENCSR332WTG Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 2566 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ff88f54d-0e97-4929-952e-49d431a4bc61/ENCFF311KBD.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332WTG Peak\ track wgEncodeReg4Epigenetics_ENCFF311KBD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF896CCA ENCSR334UWP Peak bigBed 5 GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF462 ZNF462 peaks 4 2566 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/8d60e2bf-7673-4f28-a0db-03699372df08/ENCFF896CCA.bigBed\ labelFields none\ longLabel GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF462 ZNF462 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR334UWP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF896CCA\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_rev MpcCardiacD1- bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse 0 2566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_rev MpcCardiacD1- bigWig mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse 1 2566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor1.CNhs12368.11752-123G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor1_CNhs12368_11752-123G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11752-123G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor1_CNhs12368_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11752-123G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF554FTX ENCSR332WTG Signal bigWig Middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 2567 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/47382960-80d2-4ee5-93fb-d348bfcae64e/ENCFF554FTX.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR332WTG Signal\ track wgEncodeReg4Epigenetics_ENCFF554FTX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF166JMP ENCSR334UWP Signal bigWig GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF462 ZNF462 ENCSR334UWP signal 2 2567 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/c564d144-ddc4-4b97-a6c6-242d017a10bb/ENCFF166JMP.bigWig\ color 127,133,209\ longLabel GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF462 ZNF462 ENCSR334UWP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR334UWP Signal\ track wgEncodeReg4TfChip_ENCFF166JMP\ type bigWig\ visibility full\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_fwd MpcCardiacD2+ bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward 0 2567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_fwd MpcCardiacD2+ bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward 1 2567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF429DMJ ENCSR333BUP Peak bigBed 5 Cognitive impairment head of caudate nucleus tissue female adult 86 years DNase peak 4 2568 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/6e137723-dd0a-48a4-bc37-9e5da1b66160/ENCFF429DMJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment head of caudate nucleus tissue female adult 86 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR333BUP Peak\ track wgEncodeReg4Epigenetics_ENCFF429DMJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF560QSF ENCSR336DXE Peak bigBed 5 K562 SKIL peaks 4 2568 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/99ac49be-38f1-4e1c-aede-561915ac5735/ENCFF560QSF.bigBed\ labelFields none\ longLabel K562 SKIL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR336DXE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF560QSF\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_rev MpcCardiacD2- bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse 0 2568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_rev MpcCardiacD2- bigWig mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse 1 2568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor2.CNhs12369.11753-123G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor2_CNhs12369_11753-123G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11753-123G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor2_CNhs12369_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11753-123G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF513HRB ENCSR333BUP Signal bigWig Cognitive impairment head of caudate nucleus tissue female adult 86 years DNase signal 2 2569 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/834f5f97-2ad5-4741-99c9-2617dd70a7ef/ENCFF513HRB.bigWig\ color 6,218,147\ longLabel Cognitive impairment head of caudate nucleus tissue female adult 86 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR333BUP Signal\ track wgEncodeReg4Epigenetics_ENCFF513HRB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF449BPO ENCSR336DXE Signal bigWig K562 SKIL ENCSR336DXE signal 2 2569 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a4f4009a-0a30-43ab-b8a0-e10bc0e1b5bf/ENCFF449BPO.bigWig\ color 254,75,173\ longLabel K562 SKIL ENCSR336DXE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR336DXE Signal\ track wgEncodeReg4TfChip_ENCFF449BPO\ type bigWig\ visibility full\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_fwd MpcCardiacD3+ bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward 0 2569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_fwd MpcCardiacD3+ bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward 1 2569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF854YAV ENCSR334DRN Peak bigBed 5 Skin epidermis tissue male adult 67 years H3K27ac peak 4 2570 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/44374ef3-c594-40cc-b3ba-16a8b8e05077/ENCFF854YAV.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue male adult 67 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR334DRN Peak\ track wgEncodeReg4Epigenetics_ENCFF854YAV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF173NJK ENCSR336PTS Peak bigBed 5 Parathyroid adenoma tissue male adult (65 years) CTCF peaks 4 2570 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a2eb565c-c5be-43b1-a9f3-136bf8557d6d/ENCFF173NJK.bigBed\ labelFields none\ longLabel Parathyroid adenoma tissue male adult (65 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR336PTS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF173NJK\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_rev MpcCardiacD3- bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse 0 2570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_rev MpcCardiacD3- bigWig mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse 1 2570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor3.CNhs12370.11754-123G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor3_CNhs12370_11754-123G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11754-123G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor3_CNhs12370_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11754-123G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF974KMJ ENCSR334DRN Signal bigWig Skin epidermis tissue male adult 67 years H3K27ac signal 2 2571 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/3422df04-105f-4334-9ff1-63d374540a6c/ENCFF974KMJ.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue male adult 67 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR334DRN Signal\ track wgEncodeReg4Epigenetics_ENCFF974KMJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF289MJC ENCSR336PTS Signal bigWig Parathyroid adenoma tissue male adult (65 years) CTCF ENCSR336PTS signal 2 2571 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/5166efcb-749c-4e66-bc08-8e4fc2599601/ENCFF289MJC.bigWig\ color 0,176,240\ longLabel Parathyroid adenoma tissue male adult (65 years) CTCF ENCSR336PTS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR336PTS Signal\ track wgEncodeReg4TfChip_ENCFF289MJC\ type bigWig\ visibility full\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_fwd MpcCardiacD4+ bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward 0 2571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_fwd MpcCardiacD4+ bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward 1 2571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF103ZSA ENCSR334MDJ Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 89 years DNase peak 4 2572 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/34292c23-fb00-410b-a6b5-8be8588188f1/ENCFF103ZSA.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 89 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR334MDJ Peak\ track wgEncodeReg4Epigenetics_ENCFF103ZSA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF591JWH ENCSR336YRS Peak bigBed 5 Heart left ventricle tissue female adult (53 years) POLR2A peaks 4 2572 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/6260d01a-2d8d-4104-a24a-0f82f79f210c/ENCFF591JWH.bigBed\ labelFields none\ longLabel Heart left ventricle tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR336YRS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF591JWH\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_rev MpcCardiacD4- bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse 0 2572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_rev MpcCardiacD4- bigWig mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse 1 2572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20cardiac%2c%20donor4.CNhs12371.11755-123G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - cardiac, donor4_CNhs12371_11755-123G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11755-123G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcCardiacD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellCardiacDonor4_CNhs12371_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11755-123G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF193ZCX ENCSR334MDJ Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 89 years DNase signal 2 2573 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/7cc8bcb0-e888-4daa-a0c7-dc4d45afd87b/ENCFF193ZCX.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR334MDJ Signal\ track wgEncodeReg4Epigenetics_ENCFF193ZCX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF555KGL ENCSR336YRS Signal bigWig Heart left ventricle tissue female adult (53 years) POLR2A ENCSR336YRS signal 2 2573 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/7a4b9f02-eb47-4a3c-801e-04d7c8941a4b/ENCFF555KGL.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (53 years) POLR2A ENCSR336YRS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR336YRS Signal\ track wgEncodeReg4TfChip_ENCFF555KGL\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_fwd MpcOvarianCancerLeftOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward 0 2573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_fwd MpcOvarianCancerLeftOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward 1 2573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF682EDG ENCSR335EYA Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour DNase peak 4 2574 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/16c50d81-007a-4242-b034-c069bc4fdef7/ENCFF682EDG.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335EYA Peak\ track wgEncodeReg4Epigenetics_ENCFF682EDG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF429WTD ENCSR337NWW Peak bigBed 5 HepG2 HDAC2 peaks 4 2574 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/363745d3-24d7-4274-88bd-6f377633fa9c/ENCFF429WTD.bigBed\ labelFields none\ longLabel HepG2 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR337NWW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF429WTD\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_rev MpcOvarianCancerLeftOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse 0 2574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_rev MpcOvarianCancerLeftOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse 1 2574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor1.CNhs12372.11756-123H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor1_CNhs12372_11756-123H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11756-123H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor1_CNhs12372_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11756-123H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF199TWN ENCSR335EYA Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour DNase signal 2 2575 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/7e9a7422-4f2f-4d53-92ed-50343e1cb4ea/ENCFF199TWN.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-12 subunit alpha for 1 hour, 100 ng/mL Interleukin-12 subunit beta for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335EYA Signal\ track wgEncodeReg4Epigenetics_ENCFF199TWN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF711QQB ENCSR338DGO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT2 SCRT2 peaks 4 2575 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/75d5d1de-4509-4157-b774-651747784e08/ENCFF711QQB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT2 SCRT2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR338DGO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF711QQB\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_fwd MpcOvarianCancerLeftOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward 0 2575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_fwd MpcOvarianCancerLeftOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward 1 2575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF476SPY ENCSR335JVB Peak bigBed 5 GM19372 ATAC peak 4 2576 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/a67c87da-990c-4447-8f9b-d35a6a10289f/ENCFF476SPY.bigBed\ color 2,199,185\ longLabel GM19372 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335JVB Peak\ track wgEncodeReg4Epigenetics_ENCFF476SPY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF498VXM ENCSR338DGO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT2 SCRT2 ENCSR338DGO signal 2 2576 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/ed2fa31d-cce3-431a-9ce8-e202b5ff7f19/ENCFF498VXM.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT2 SCRT2 ENCSR338DGO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR338DGO Signal\ track wgEncodeReg4TfChip_ENCFF498VXM\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_rev MpcOvarianCancerLeftOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse 0 2576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_rev MpcOvarianCancerLeftOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse 1 2576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor2.CNhs13092.11833-124G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor2_CNhs13092_11833-124G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11833-124G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor2_CNhs13092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11833-124G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF840DXB ENCSR335JVB Signal bigWig GM19372 ATAC signal 2 2577 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/fd63fd2e-ad18-4fae-bd66-cce555456ac6/ENCFF840DXB.bigWig\ color 2,199,185\ longLabel GM19372 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335JVB Signal\ track wgEncodeReg4Epigenetics_ENCFF840DXB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF916QGM ENCSR338DUC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 peaks 4 2577 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/272f64dc-5674-4989-8624-b81a4eb05e01/ENCFF916QGM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR338DUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF916QGM\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_fwd MpcOvarianCancerLeftOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward 0 2577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_fwd MpcOvarianCancerLeftOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward 1 2577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF670PIL ENCSR335LHS Signal bigWig Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours 2 2578 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/6ee468ab-e760-4bf6-b970-e8a84841c07a/ENCFF670PIL.bigWig\ color 2,199,185\ longLabel Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 33 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335LHS Signal\ track wgEncodeReg4Epigenetics_ENCFF670PIL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF068EJE ENCSR338DUC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 ENCSR338DUC signal 2 2578 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/a60e4a11-a1d2-4a46-bb28-4f4dd4926dfb/ENCFF068EJE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 ENCSR338DUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR338DUC Signal\ track wgEncodeReg4TfChip_ENCFF068EJE\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_rev MpcOvarianCancerLeftOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse 0 2578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_rev MpcOvarianCancerLeftOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse 1 2578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor3.CNhs12376.11760-123H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor3_CNhs12376_11760-123H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11760-123H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor3_CNhs12376_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11760-123H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF532EYR ENCSR335LOQ Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase peak 4 2579 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/47d07869-e679-465f-bb83-201ca070a8bf/ENCFF532EYR.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335LOQ Peak\ track wgEncodeReg4Epigenetics_ENCFF532EYR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF427MRU ENCSR338MMB Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) NR2F2 peaks 4 2579 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/31cbee0e-6d7c-4ef2-bc85-f9ae25185d12/ENCFF427MRU.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) NR2F2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR338MMB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF427MRU\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_fwd MpcOvarianCancerLeftOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward 0 2579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_fwd MpcOvarianCancerLeftOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward 1 2579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF330JQQ ENCSR335LOQ Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase signal 2 2580 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0105c862-ed80-4462-a378-a8f11783f29d/ENCFF330JQQ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-7 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335LOQ Signal\ track wgEncodeReg4Epigenetics_ENCFF330JQQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF885IVJ ENCSR338MMB Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) NR2F2 ENCSR338MMB signal 2 2580 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/7bd7331c-ff83-48c9-90bd-b3bfa2cbce1d/ENCFF885IVJ.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) NR2F2 ENCSR338MMB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR338MMB Signal\ track wgEncodeReg4TfChip_ENCFF885IVJ\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_rev MpcOvarianCancerLeftOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse 0 2580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerLeftOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_rev MpcOvarianCancerLeftOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse 1 2580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20left%20ovary%2c%20donor4.CNhs13094.11836-124G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer left ovary, donor4_CNhs13094_11836-124G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11836-124G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerLeftOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerLeftOvaryDonor4_CNhs13094_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11836-124G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF941KRS ENCSR335XRZ Peak bigBed 5 Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 36 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours 4 2581 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/091f4919-2ba2-4f82-938f-c3db4787d8ea/ENCFF941KRS.bigBed\ color 2,199,185\ longLabel Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 36 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335XRZ Peak\ track wgEncodeReg4Epigenetics_ENCFF941KRS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF801JUH ENCSR339JTP Peak bigBed 5 HepG2 RBM39 peaks 4 2581 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/f68991f6-5bb6-43c2-ae69-6ea7e5fe3a94/ENCFF801JUH.bigBed\ labelFields none\ longLabel HepG2 RBM39 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR339JTP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF801JUH\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_fwd MpcOvarianCancerMetastasisD1+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward 0 2581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_fwd MpcOvarianCancerMetastasisD1+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward 1 2581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF471TZT ENCSR335XRZ Signal bigWig Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 36 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours 2 2582 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/d415aa6e-d075-4dd2-accb-c668a429c4dc/ENCFF471TZT.bigWig\ color 2,199,185\ longLabel Stimulated activated effector memory CD8-positive, alpha-beta T cell male adult 36 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335XRZ Signal\ track wgEncodeReg4Epigenetics_ENCFF471TZT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF830QBU ENCSR339JTP Signal bigWig HepG2 RBM39 ENCSR339JTP signal 2 2582 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/cf4bfb81-bd3f-4acd-9f06-2ddfc2d61d36/ENCFF830QBU.bigWig\ color 137,152,82\ longLabel HepG2 RBM39 ENCSR339JTP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR339JTP Signal\ track wgEncodeReg4TfChip_ENCFF830QBU\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_rev MpcOvarianCancerMetastasisD1- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse 0 2582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_rev MpcOvarianCancerMetastasisD1- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse 1 2582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor1.CNhs12374.11758-123H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor1_CNhs12374_11758-123H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11758-123H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor1_CNhs12374_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11758-123H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF291AKW ENCSR335YEH Peak bigBed 5 Middle frontal area 46 tissue male adult 71 years H3K4me3 peak 4 2583 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/3af875b9-00c6-4d0b-9b4f-88f9dfb0de7c/ENCFF291AKW.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 71 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335YEH Peak\ track wgEncodeReg4Epigenetics_ENCFF291AKW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF613PTN ENCSR340BXT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7 KAT7 peaks 4 2583 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e422deb2-aaec-4734-85fa-02a5e3fa676e/ENCFF613PTN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7 KAT7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR340BXT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF613PTN\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_ctss_fwd MpcOvarianCancerMetastasisD2+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward 0 2583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor2.CNhs13093.11835-124G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11835-124G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_fwd MpcOvarianCancerMetastasisD2+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward 1 2583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor2.CNhs13093.11835-124G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11835-124G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF752DGV ENCSR335YEH Signal bigWig Middle frontal area 46 tissue male adult 71 years H3K4me3 signal 2 2584 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/197b21d3-860a-4a97-a01f-9631028d2150/ENCFF752DGV.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 71 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR335YEH Signal\ track wgEncodeReg4Epigenetics_ENCFF752DGV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF511BID ENCSR340BXT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7 KAT7 ENCSR340BXT signal 2 2584 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/351e6f51-dd6a-4a02-8ca2-e59a4040eb43/ENCFF511BID.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT7 KAT7 ENCSR340BXT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR340BXT Signal\ track wgEncodeReg4TfChip_ENCFF511BID\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_ctss_rev MpcOvarianCancerMetastasisD2- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_reverse 0 2584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor2.CNhs13093.11835-124G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11835-124G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_rev MpcOvarianCancerMetastasisD2- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_reverse 1 2584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor2.CNhs13093.11835-124G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor2_CNhs13093_11835-124G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11835-124G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor2_CNhs13093_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11835-124G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF173NJK ENCSR336PTS Peak bigBed 5 Parathyroid adenoma tissue male adult 65 years CTCF peak 4 2585 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a2eb565c-c5be-43b1-a9f3-136bf8557d6d/ENCFF173NJK.bigBed\ color 0,176,240\ labelFields none\ longLabel Parathyroid adenoma tissue male adult 65 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR336PTS Peak\ track wgEncodeReg4Epigenetics_ENCFF173NJK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF118DKH ENCSR341VYI Peak bigBed 5 Hepatocyte originated from H9 EZH2phosphoT487 peaks 4 2585 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/d76adc70-9ecf-4a34-abc0-ee79eec69b3e/ENCFF118DKH.bigBed\ labelFields none\ longLabel Hepatocyte originated from H9 EZH2phosphoT487 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR341VYI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF118DKH\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_ctss_fwd MpcOvarianCancerMetastasisD3+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_forward 0 2585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor3.CNhs12378.11762-123H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11762-123H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_tpm_fwd MpcOvarianCancerMetastasisD3+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_forward 1 2585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor3.CNhs12378.11762-123H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11762-123H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF289MJC ENCSR336PTS Signal bigWig Parathyroid adenoma tissue male adult 65 years CTCF signal 2 2586 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/5166efcb-749c-4e66-bc08-8e4fc2599601/ENCFF289MJC.bigWig\ color 0,176,240\ longLabel Parathyroid adenoma tissue male adult 65 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR336PTS Signal\ track wgEncodeReg4Epigenetics_ENCFF289MJC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF600DXR ENCSR341VYI Signal bigWig Hepatocyte originated from H9 EZH2phosphoT487 ENCSR341VYI signal 2 2586 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/2b9749b2-b916-4f2b-a49c-157fcedc4cff/ENCFF600DXR.bigWig\ color 137,152,82\ longLabel Hepatocyte originated from H9 EZH2phosphoT487 ENCSR341VYI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR341VYI Signal\ track wgEncodeReg4TfChip_ENCFF600DXR\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_ctss_rev MpcOvarianCancerMetastasisD3- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_reverse 0 2586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor3.CNhs12378.11762-123H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11762-123H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_tpm_rev MpcOvarianCancerMetastasisD3- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_reverse 1 2586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor3.CNhs12378.11762-123H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor3_CNhs12378_11762-123H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11762-123H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor3_CNhs12378_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11762-123H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF598KVU ENCSR336QAO Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 26 years treated with Interferon gamma for 1 hour DNase peak 4 2587 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/6309dfbf-f16c-4328-bafa-7a6ebd4301a5/ENCFF598KVU.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 26 years treated with Interferon gamma for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR336QAO Peak\ track wgEncodeReg4Epigenetics_ENCFF598KVU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF655JCD ENCSR342THD Peak bigBed 5 GM12878 BCLAF1 peaks 4 2587 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/7d4b1d89-2480-4e31-8c07-3d402994979e/ENCFF655JCD.bigBed\ labelFields none\ longLabel GM12878 BCLAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR342THD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF655JCD\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_ctss_fwd MpcOvarianCancerMetastasisD4+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_forward 0 2587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor4.CNhs13097.11838-124H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11838-124H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_tpm_fwd MpcOvarianCancerMetastasisD4+ bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_forward 1 2587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor4.CNhs13097.11838-124H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11838-124H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF469QBP ENCSR336QAO Signal bigWig CD4-positive, alpha-beta T cell female adult 26 years treated with Interferon gamma for 1 hour DNase signal 2 2588 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/876f34ad-d600-4c39-8713-03962f036fc8/ENCFF469QBP.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 26 years treated with Interferon gamma for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR336QAO Signal\ track wgEncodeReg4Epigenetics_ENCFF469QBP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF605HHD ENCSR342THD Signal bigWig GM12878 BCLAF1 ENCSR342THD signal 2 2588 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/9ab529bc-05b5-424d-8bce-343edc5b223d/ENCFF605HHD.bigWig\ color 254,75,173\ longLabel GM12878 BCLAF1 ENCSR342THD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR342THD Signal\ track wgEncodeReg4TfChip_ENCFF605HHD\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_ctss_rev MpcOvarianCancerMetastasisD4- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_reverse 0 2588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor4.CNhs13097.11838-124H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11838-124H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerMetastasisD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_tpm_rev MpcOvarianCancerMetastasisD4- bigWig mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_reverse 1 2588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20metastasis%2c%20donor4.CNhs13097.11838-124H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer metastasis, donor4_CNhs13097_11838-124H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11838-124H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerMetastasisD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerMetastasisDonor4_CNhs13097_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11838-124H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF419OAR ENCSR336RGT Peak bigBed 5 Placenta tissue male embryo DNase peak 4 2589 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/409540ea-e8b7-4583-bb2b-63a8bea955df/ENCFF419OAR.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR336RGT Peak\ track wgEncodeReg4Epigenetics_ENCFF419OAR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF198WCP ENCSR343ELW Peak bigBed 5 K562 LEF1 peaks 4 2589 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/51225a34-a000-4a94-8758-ed39f4bb5683/ENCFF198WCP.bigBed\ labelFields none\ longLabel K562 LEF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343ELW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF198WCP\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_ctss_fwd MpcOvarianCancerRightOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_forward 0 2589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor1.CNhs12373.11757-123H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11757-123H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_tpm_fwd MpcOvarianCancerRightOvaryD1+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_forward 1 2589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor1.CNhs12373.11757-123H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11757-123H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF456JKS ENCSR336RGT Signal bigWig Placenta tissue male embryo DNase signal 2 2590 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/fe9d0fdc-4e29-4f3d-a10f-0d4152e9efe4/ENCFF456JKS.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR336RGT Signal\ track wgEncodeReg4Epigenetics_ENCFF456JKS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF757PUB ENCSR343ELW Signal bigWig K562 LEF1 ENCSR343ELW signal 2 2590 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/fabf9880-3a20-4235-a29a-378e8bbf584b/ENCFF757PUB.bigWig\ color 254,75,173\ longLabel K562 LEF1 ENCSR343ELW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343ELW Signal\ track wgEncodeReg4TfChip_ENCFF757PUB\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_ctss_rev MpcOvarianCancerRightOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_reverse 0 2590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor1.CNhs12373.11757-123H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11757-123H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_tpm_rev MpcOvarianCancerRightOvaryD1- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_reverse 1 2590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor1.CNhs12373.11757-123H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor1_CNhs12373_11757-123H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11757-123H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor1_CNhs12373_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11757-123H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF713NGZ ENCSR337IRF Peak bigBed 5 RCC DNase peak 4 2591 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/49e55ec1-f8df-405b-a7e5-f469b07f3144/ENCFF713NGZ.bigBed\ color 6,218,147\ labelFields none\ longLabel RCC DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR337IRF Peak\ track wgEncodeReg4Epigenetics_ENCFF713NGZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF567XUT ENCSR343IFJ Peak bigBed 5 K562 CC2D1A peaks 4 2591 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/29c3820d-afe5-4989-acad-d1f9531e1087/ENCFF567XUT.bigBed\ labelFields none\ longLabel K562 CC2D1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343IFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF567XUT\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_ctss_fwd MpcOvarianCancerRightOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_forward 0 2591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor2.CNhs12375.11759-123H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11759-123H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_tpm_fwd MpcOvarianCancerRightOvaryD2+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_forward 1 2591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor2.CNhs12375.11759-123H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11759-123H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF582QOS ENCSR337IRF Signal bigWig RCC DNase signal 2 2592 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/03760167-1bc8-4515-ae37-670752366366/ENCFF582QOS.bigWig\ color 6,218,147\ longLabel RCC DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR337IRF Signal\ track wgEncodeReg4Epigenetics_ENCFF582QOS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF592ZQX ENCSR343IFJ Signal bigWig K562 CC2D1A ENCSR343IFJ signal 2 2592 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/28/5496b20a-d81e-46d9-b83b-afb6d550ca30/ENCFF592ZQX.bigWig\ color 254,75,173\ longLabel K562 CC2D1A ENCSR343IFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343IFJ Signal\ track wgEncodeReg4TfChip_ENCFF592ZQX\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_ctss_rev MpcOvarianCancerRightOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_reverse 0 2592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor2.CNhs12375.11759-123H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11759-123H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_tpm_rev MpcOvarianCancerRightOvaryD2- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_reverse 1 2592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor2.CNhs12375.11759-123H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor2_CNhs12375_11759-123H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11759-123H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor2_CNhs12375_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11759-123H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF906PME ENCSR337UIU Peak bigBed 5 Stomach tissue female adult 53 years ATAC peak 4 2593 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/0313f232-34ab-4318-9a98-22d0f37ea859/ENCFF906PME.bigBed\ color 2,199,185\ longLabel Stomach tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR337UIU Peak\ track wgEncodeReg4Epigenetics_ENCFF906PME\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF369KXU ENCSR343RJH Peak bigBed 5 Spleen tissue male adult (37 years) CTCF peaks 4 2593 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/09/07/62d1e59f-7610-438a-8483-349d05b80654/ENCFF369KXU.bigBed\ labelFields none\ longLabel Spleen tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343RJH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF369KXU\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_fwd MpcOvarianCancerRightOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_forward 0 2593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_tpm_fwd MpcOvarianCancerRightOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_forward 1 2593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF868ZCL ENCSR337UIU Signal bigWig Stomach tissue female adult 53 years ATAC signal 2 2594 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/380fbc08-efe4-4b8d-ab5b-eb88df749f27/ENCFF868ZCL.bigWig\ color 2,199,185\ longLabel Stomach tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR337UIU Signal\ track wgEncodeReg4Epigenetics_ENCFF868ZCL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF688NHG ENCSR343RJH Signal bigWig Spleen tissue male adult (37 years) CTCF ENCSR343RJH signal 2 2594 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1558bd4d-8af6-4110-b2a9-ebf2bce00f16/ENCFF688NHG.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (37 years) CTCF ENCSR343RJH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343RJH Signal\ track wgEncodeReg4TfChip_ENCFF688NHG\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_fwd MpcOvarianCancerRightOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_forward 0 2594 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_fwd MpcOvarianCancerRightOvaryD3+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_forward 1 2594 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF492GYB ENCSR338NEI Peak bigBed 5 Pancreas tissue female adult 41 years DNase peak 4 2595 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/1c79cdcb-99a1-4fd3-8132-a36c98fe9f4b/ENCFF492GYB.bigBed\ color 6,218,147\ labelFields none\ longLabel Pancreas tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR338NEI Peak\ track wgEncodeReg4Epigenetics_ENCFF492GYB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF585LUC ENCSR343RJR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 peaks 4 2595 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/7cf0d262-7581-4e92-8aad-733d40dca68e/ENCFF585LUC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343RJR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF585LUC\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse 0 2595 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_tpm_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse 1 2595 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF330ZGD ENCSR338NEI Signal bigWig Pancreas tissue female adult 41 years DNase signal 2 2596 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/59932e0e-2860-4cc7-a551-44a4ecb5cb60/ENCFF330ZGD.bigWig\ color 6,218,147\ longLabel Pancreas tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR338NEI Signal\ track wgEncodeReg4Epigenetics_ENCFF330ZGD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF133FPU ENCSR343RJR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 ENCSR343RJR signal 2 2596 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/829e7ca5-1a1a-4e52-8764-66a56371e984/ENCFF133FPU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 ENCSR343RJR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR343RJR Signal\ track wgEncodeReg4TfChip_ENCFF133FPU\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse 0 2596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02%29.CNhs12377.11761-123H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)_CNhs12377_11761-123H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11761-123H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702_CNhs12377_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11761-123H6\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_rev MpcOvarianCancerRightOvaryD3- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse 1 2596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor3%20%28SOC-57-02-G%29.CNhs13507.11842-124H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G)_CNhs13507_11842-124H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11842-124H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor3SOC5702G_CNhs13507_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11842-124H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF419ZAY ENCSR339TAQ Peak bigBed 5 Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K4me3 peak 4 2597 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/44edfc94-830c-48c8-b9e4-89d472298281/ENCFF419ZAY.bigBed\ color 255,0,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR339TAQ Peak\ track wgEncodeReg4Epigenetics_ENCFF419ZAY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF854MGB ENCSR344SBD Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF596 ZNF596 peaks 4 2597 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/31/8bbb466f-0b71-4031-8d82-65cba1bcd7b4/ENCFF854MGB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF596 ZNF596 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR344SBD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF854MGB\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_fwd MpcOvarianCancerRightOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward 0 2597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_fwd MpcOvarianCancerRightOvaryD4+ bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward 1 2597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF745ELD ENCSR339TAQ Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K4me3 signal 2 2598 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/99a44882-e879-490f-a9c4-6899c1b9b9b7/ENCFF745ELD.bigWig\ color 255,0,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR339TAQ Signal\ track wgEncodeReg4Epigenetics_ENCFF745ELD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF051SNX ENCSR344SBD Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF596 ZNF596 ENCSR344SBD signal 2 2598 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/31/09045e67-2057-4942-bca2-c9559cea6c41/ENCFF051SNX.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF596 ZNF596 ENCSR344SBD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR344SBD Signal\ track wgEncodeReg4TfChip_ENCFF051SNX\ type bigWig\ visibility full\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_rev MpcOvarianCancerRightOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse 0 2598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MpcOvarianCancerRightOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_rev MpcOvarianCancerRightOvaryD4- bigWig mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse 1 2598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20precursor%20cell%20-%20ovarian%20cancer%20right%20ovary%2c%20donor4.CNhs13096.11837-124H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal precursor cell - ovarian cancer right ovary, donor4_CNhs13096_11837-124H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11837-124H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MpcOvarianCancerRightOvaryD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalPrecursorCellOvarianCancerRightOvaryDonor4_CNhs13096_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11837-124H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF066NJO ENCSR339TVH Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 2599 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/67a49850-a97f-4256-a85e-9dc5014a6404/ENCFF066NJO.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR339TVH Peak\ track wgEncodeReg4Epigenetics_ENCFF066NJO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF542CIC ENCSR345YWJ Peak bigBed 5 Liver tissue female child (4 years) ZBTB33 peaks 4 2599 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/46cb880b-b6b2-4200-be4a-e8b93281c85c/ENCFF542CIC.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR345YWJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF542CIC\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_fwd MscAdiposeD0+ bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward 0 2599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_fwd MscAdiposeD0+ bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward 1 2599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF576ZEH ENCSR339TVH Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2600 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/ba9eed46-dbcb-49b0-8d02-5bc70ac89b62/ENCFF576ZEH.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR339TVH Signal\ track wgEncodeReg4Epigenetics_ENCFF576ZEH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF204GJZ ENCSR345YWJ Signal bigWig Liver tissue female child (4 years) ZBTB33 ENCSR345YWJ signal 2 2600 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/62e902de-37e5-468c-be5d-7270fb774525/ENCFF204GJZ.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) ZBTB33 ENCSR345YWJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR345YWJ Signal\ track wgEncodeReg4TfChip_ENCFF204GJZ\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_rev MscAdiposeD0- bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse 0 2600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_rev MscAdiposeD0- bigWig Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse 1 2600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20adipose%2c%20donor0.CNhs10844.11217-116B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - adipose, donor0_CNhs10844_11217-116B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11217-116B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor0_CNhs10844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11217-116B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF199VOU ENCSR339XMR Peak bigBed 5 Basal cell carcinoma skin epidermis tissue male adult 58 years H3K27ac peak 4 2601 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/61f74668-6fb1-4213-81a0-40e08fb096ed/ENCFF199VOU.bigBed\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 58 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR339XMR Peak\ track wgEncodeReg4Epigenetics_ENCFF199VOU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF510OLG ENCSR346BOD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2 TCF7L2 peaks 4 2601 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ef7675b1-5d32-4829-9a92-6e32bd74dc0b/ENCFF510OLG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR346BOD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF510OLG\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_fwd MscAdiposeD1+ bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward 0 2601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_fwd MscAdiposeD1+ bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward 1 2601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF763SFH ENCSR339XMR Signal bigWig Basal cell carcinoma skin epidermis tissue male adult 58 years H3K27ac signal 2 2602 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/4672ccb3-eeea-438f-aa17-c88f20e0203f/ENCFF763SFH.bigWig\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 58 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR339XMR Signal\ track wgEncodeReg4Epigenetics_ENCFF763SFH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF798KNW ENCSR346BOD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2 TCF7L2 ENCSR346BOD signal 2 2602 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/601f03f9-03c4-4cc3-971e-61bc70a4f471/ENCFF798KNW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF7L2 TCF7L2 ENCSR346BOD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR346BOD Signal\ track wgEncodeReg4TfChip_ENCFF798KNW\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_rev MscAdiposeD1- bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse 0 2602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_rev MscAdiposeD1- bigWig Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse 1 2602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor1.CNhs11345.11537-120A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor1_CNhs11345_11537-120A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11537-120A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor1_CNhs11345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11537-120A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF523JXA ENCSR340FUG Peak bigBed 5 Middle frontal area 46 tissue female adult 87 years H3K4me3 peak 4 2603 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/d266ea59-7801-4058-ba93-0037e27c7a4b/ENCFF523JXA.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 87 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340FUG Peak\ track wgEncodeReg4Epigenetics_ENCFF523JXA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF374BUN ENCSR347HAM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221 ZNF221 peaks 4 2603 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/00ebc153-59d3-4314-92a5-d3351d5c5181/ENCFF374BUN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221 ZNF221 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR347HAM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF374BUN\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_fwd MscAdiposeD2+ bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward 0 2603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_fwd MscAdiposeD2+ bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward 1 2603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF981HHV ENCSR340FUG Signal bigWig Middle frontal area 46 tissue female adult 87 years H3K4me3 signal 2 2604 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ab45c8d5-8c58-4d02-b608-f2c94eff319a/ENCFF981HHV.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 87 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340FUG Signal\ track wgEncodeReg4Epigenetics_ENCFF981HHV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF983GHV ENCSR347HAM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221 ZNF221 ENCSR347HAM signal 2 2604 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/6cea0e98-134a-4588-8edc-df619a18cd86/ENCFF983GHV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF221 ZNF221 ENCSR347HAM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR347HAM Signal\ track wgEncodeReg4TfChip_ENCFF983GHV\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_rev MscAdiposeD2- bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse 0 2604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_rev MscAdiposeD2- bigWig Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse 1 2604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor2.CNhs12101.11617-122A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor2_CNhs12101_11617-122A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11617-122A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor2_CNhs12101_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11617-122A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF971PDZ ENCSR340MRJ Peak bigBed 5 Transverse colon tissue male adult 54 years DNase peak 4 2605 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/4d33357b-8af0-4505-b6e8-17420dd66362/ENCFF971PDZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Transverse colon tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340MRJ Peak\ track wgEncodeReg4Epigenetics_ENCFF971PDZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF932XBQ ENCSR347NOB Peak bigBed 5 GM12878 CEBPZ peaks 4 2605 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3a9eed9b-be5d-4417-abbd-8ef1bfbe2ebe/ENCFF932XBQ.bigBed\ labelFields none\ longLabel GM12878 CEBPZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR347NOB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF932XBQ\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_fwd MscAdiposeD3+ bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward 0 2605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_fwd MscAdiposeD3+ bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward 1 2605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF405NTZ ENCSR340MRJ Signal bigWig Transverse colon tissue male adult 54 years DNase signal 2 2606 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/69939f20-574f-4df6-9abd-d3f229eb4bff/ENCFF405NTZ.bigWig\ color 6,218,147\ longLabel Transverse colon tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340MRJ Signal\ track wgEncodeReg4Epigenetics_ENCFF405NTZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF420SKF ENCSR347NOB Signal bigWig GM12878 CEBPZ ENCSR347NOB signal 2 2606 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e7d8d1f9-4506-46cf-a675-1be5833163b0/ENCFF420SKF.bigWig\ color 254,75,173\ longLabel GM12878 CEBPZ ENCSR347NOB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR347NOB Signal\ track wgEncodeReg4TfChip_ENCFF420SKF\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_rev MscAdiposeD3- bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse 0 2606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_rev MscAdiposeD3- bigWig Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse 1 2606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20adipose%2c%20donor3.CNhs12922.11698-123A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - adipose, donor3_CNhs12922_11698-123A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11698-123A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdiposeD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAdiposeDonor3_CNhs12922_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11698-123A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF290FYV ENCSR340WQU Peak bigBed 5 HeLa-S3 H3K4me3 peak 4 2607 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/3acee1a5-db6b-4cda-a128-b926eca82a7b/ENCFF290FYV.bigBed\ color 255,0,0\ longLabel HeLa-S3 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340WQU Peak\ track wgEncodeReg4Epigenetics_ENCFF290FYV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF164JES ENCSR347PUQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC ZXDC peaks 4 2607 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/61df37dc-c7ed-49a8-8184-263b8bd874da/ENCFF164JES.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC ZXDC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR347PUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF164JES\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_fwd MscAmnioticMembraneD1+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward 0 2607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_fwd MscAmnioticMembraneD1+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward 1 2607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF432PYK ENCSR340WQU Signal bigWig HeLa-S3 H3K4me3 signal 2 2608 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/992a6f64-bb73-4fc9-8bdc-4b4e1c0f16c5/ENCFF432PYK.bigWig\ color 255,0,0\ longLabel HeLa-S3 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340WQU Signal\ track wgEncodeReg4Epigenetics_ENCFF432PYK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF805VXG ENCSR347PUQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC ZXDC ENCSR347PUQ signal 2 2608 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/3f7c8a65-873c-4b89-8423-5ed6df6a3f5d/ENCFF805VXG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZXDC ZXDC ENCSR347PUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR347PUQ Signal\ track wgEncodeReg4TfChip_ENCFF805VXG\ type bigWig\ visibility full\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_rev MscAmnioticMembraneD1- bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse 0 2608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_rev MscAmnioticMembraneD1- bigWig Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse 1 2608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor1.CNhs11349.11547-120B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor1_CNhs11349_11547-120B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11547-120B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor1_CNhs11349_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11547-120B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF281NSV ENCSR340XQX Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak 4 2609 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/f1b8eae0-457a-43a2-a24b-1b90781711b2/ENCFF281NSV.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340XQX Peak\ track wgEncodeReg4Epigenetics_ENCFF281NSV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF676PLV ENCSR348AGV Peak bigBed 5 HEK293 SETDB1 peaks 4 2609 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/508dff03-59f7-4927-9d2e-0bbd4f0a2959/ENCFF676PLV.bigBed\ labelFields none\ longLabel HEK293 SETDB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR348AGV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF676PLV\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_fwd MscAmnioticMembraneD2+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward 0 2609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_fwd MscAmnioticMembraneD2+ bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward 1 2609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF032ITK ENCSR340XQX Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal 2 2610 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/c6a92439-db25-4671-a1ee-5bec0b3ef27a/ENCFF032ITK.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340XQX Signal\ track wgEncodeReg4Epigenetics_ENCFF032ITK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF818NCB ENCSR348AGV Signal bigWig HEK293 SETDB1 ENCSR348AGV signal 2 2610 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/b5106042-6f02-4fe5-b24a-b6917fad7cd9/ENCFF818NCB.bigWig\ color 92,161,153\ longLabel HEK293 SETDB1 ENCSR348AGV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR348AGV Signal\ track wgEncodeReg4TfChip_ENCFF818NCB\ type bigWig\ visibility full\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_rev MscAmnioticMembraneD2- bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse 0 2610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAmnioticMembraneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_rev MscAmnioticMembraneD2- bigWig Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse 1 2610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20amniotic%20membrane%2c%20donor2.CNhs12104.11627-122B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - amniotic membrane, donor2_CNhs12104_11627-122B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11627-122B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAmnioticMembraneD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsAmnioticMembraneDonor2_CNhs12104_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11627-122B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF083WGK ENCSR340ZTB Peak bigBed 5 Skin epidermis tissue female adult 80 years H3K27ac peak 4 2611 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/c8a7dc76-cc59-4ee6-8559-8927506f29b9/ENCFF083WGK.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue female adult 80 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340ZTB Peak\ track wgEncodeReg4Epigenetics_ENCFF083WGK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF365KTT ENCSR348JOJ Peak bigBed 5 MCF-7 MTA1 peaks 4 2611 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/cc2ef03e-0cfa-4304-8fcb-3541810abb35/ENCFF365KTT.bigBed\ labelFields none\ longLabel MCF-7 MTA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR348JOJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF365KTT\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_fwd MscBoneMarrowD1+ bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward 0 2611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_fwd MscBoneMarrowD1+ bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward 1 2611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF306MNM ENCSR340ZTB Signal bigWig Skin epidermis tissue female adult 80 years H3K27ac signal 2 2612 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/3375c71e-c6fa-424c-b8d2-c07f4c7f3862/ENCFF306MNM.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue female adult 80 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR340ZTB Signal\ track wgEncodeReg4Epigenetics_ENCFF306MNM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF857OAI ENCSR348JOJ Signal bigWig MCF-7 MTA1 ENCSR348JOJ signal 2 2612 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/bbabe403-9a64-44d6-9117-d0e3f82e8ed6/ENCFF857OAI.bigWig\ color 65,171,173\ longLabel MCF-7 MTA1 ENCSR348JOJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR348JOJ Signal\ track wgEncodeReg4TfChip_ENCFF857OAI\ type bigWig\ visibility full\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_rev MscBoneMarrowD1- bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse 0 2612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_rev MscBoneMarrowD1- bigWig Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse 1 2612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor1.CNhs11344.11536-120A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor1_CNhs11344_11536-120A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11536-120A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor1_CNhs11344_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11536-120A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF556NIR ENCSR341QLC Peak bigBed 5 Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 2613 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9a0c08cd-d19d-45aa-af93-fe287d916ec0/ENCFF556NIR.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR341QLC Peak\ track wgEncodeReg4Epigenetics_ENCFF556NIR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF365JLH ENCSR349TZO Peak bigBed 5 K562 NCOA2 peaks 4 2613 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/09b7b518-1273-4f35-98f5-561d4a1d2649/ENCFF365JLH.bigBed\ labelFields none\ longLabel K562 NCOA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR349TZO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF365JLH\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_fwd MscBoneMarrowD2+ bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward 0 2613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_fwd MscBoneMarrowD2+ bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward 1 2613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF202ADM ENCSR341QLC Signal bigWig Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 2614 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/cbcc31c2-84fa-4cc2-99ee-e81678c66973/ENCFF202ADM.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR341QLC Signal\ track wgEncodeReg4Epigenetics_ENCFF202ADM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF323ZHL ENCSR349TZO Signal bigWig K562 NCOA2 ENCSR349TZO signal 2 2614 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/cb95b486-7ee7-420e-ad54-be1543185e89/ENCFF323ZHL.bigWig\ color 254,75,173\ longLabel K562 NCOA2 ENCSR349TZO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR349TZO Signal\ track wgEncodeReg4TfChip_ENCFF323ZHL\ type bigWig\ visibility full\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_rev MscBoneMarrowD2- bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse 0 2614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_rev MscBoneMarrowD2- bigWig Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse 1 2614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor2.CNhs12100.11616-122A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor2_CNhs12100_11616-122A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11616-122A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor2_CNhs12100_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11616-122A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF366JRK ENCSR342FPJ Peak bigBed 5 Tibial artery tissue male adult 54 years H3K4me3 peak 4 2615 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/ea4a4d02-c80a-4323-9434-a73a88466d24/ENCFF366JRK.bigBed\ color 255,0,0\ longLabel Tibial artery tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342FPJ Peak\ track wgEncodeReg4Epigenetics_ENCFF366JRK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF244ZHV ENCSR350NBQ Peak bigBed 5 Heart left ventricle tissue male adult (54 years) CTCF peaks 4 2615 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/37acf077-74fb-4534-9c84-860f75bd3a06/ENCFF244ZHV.bigBed\ labelFields none\ longLabel Heart left ventricle tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350NBQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF244ZHV\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_fwd MscBoneMarrowD3+ bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward 0 2615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_fwd MscBoneMarrowD3+ bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward 1 2615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF571BDF ENCSR342FPJ Signal bigWig Tibial artery tissue male adult 54 years H3K4me3 signal 2 2616 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/db187e3b-519a-4697-9451-95d1aa46a87f/ENCFF571BDF.bigWig\ color 255,0,0\ longLabel Tibial artery tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342FPJ Signal\ track wgEncodeReg4Epigenetics_ENCFF571BDF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF797NQV ENCSR350NBQ Signal bigWig Heart left ventricle tissue male adult (54 years) CTCF ENCSR350NBQ signal 2 2616 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ad5ca35e-d727-4d38-b9e2-11e247f8263f/ENCFF797NQV.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (54 years) CTCF ENCSR350NBQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350NBQ Signal\ track wgEncodeReg4TfChip_ENCFF797NQV\ type bigWig\ visibility full\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_rev MscBoneMarrowD3- bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse 0 2616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_rev MscBoneMarrowD3- bigWig Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse 1 2616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor3.CNhs12126.11697-123A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor3_CNhs12126_11697-123A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11697-123A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor3_CNhs12126_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11697-123A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF523KNW ENCSR342GFK Peak bigBed 5 K562 treated with 10 nM Vorinostat for 4 hours ATAC peak 4 2617 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/10819ab2-996a-4dfa-8532-d236232abd25/ENCFF523KNW.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Vorinostat for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342GFK Peak\ track wgEncodeReg4Epigenetics_ENCFF523KNW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF027VSJ ENCSR350ORK Peak bigBed 5 Liver tissue female child (4 years) GABPA peaks 4 2617 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/3d152773-5e6d-4ee8-bd3b-ab2530255d24/ENCFF027VSJ.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) GABPA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350ORK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF027VSJ\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_fwd MscBoneMarrowD4+ bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward 0 2617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_fwd MscBoneMarrowD4+ bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward 1 2617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF430YIV ENCSR342GFK Signal bigWig K562 treated with 10 nM Vorinostat for 4 hours ATAC signal 2 2618 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/2dbea174-f515-4ea1-b062-074743d5b24c/ENCFF430YIV.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Vorinostat for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342GFK Signal\ track wgEncodeReg4Epigenetics_ENCFF430YIV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF589SES ENCSR350ORK Signal bigWig Liver tissue female child (4 years) GABPA ENCSR350ORK signal 2 2618 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/9b0c0849-6fb4-4955-a381-aac59743a9da/ENCFF589SES.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) GABPA ENCSR350ORK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350ORK Signal\ track wgEncodeReg4TfChip_ENCFF589SES\ type bigWig\ visibility full\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_rev MscBoneMarrowD4- bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse 0 2618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscBoneMarrowD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_rev MscBoneMarrowD4- bigWig Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse 1 2618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20bone%20marrow%2c%20donor4.CNhs11316.11464-119B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - bone marrow, donor4_CNhs11316_11464-119B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11464-119B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscBoneMarrowD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsBoneMarrowDonor4_CNhs11316_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11464-119B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF960UGA ENCSR342KXD Peak bigBed 5 Heart right ventricle tissue male adult 43 years H3K27ac peak 4 2619 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/b4442d29-544b-4f01-9889-26698086656c/ENCFF960UGA.bigBed\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 43 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342KXD Peak\ track wgEncodeReg4Epigenetics_ENCFF960UGA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF446ZGT ENCSR350PUV Peak bigBed 5 Spleen tissue female adult (51 years) POLR2AphosphoS5 peaks 4 2619 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/2031c54d-e42d-481f-9fd9-bc92859792c2/ENCFF446ZGT.bigBed\ labelFields none\ longLabel Spleen tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350PUV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF446ZGT\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_fwd MscHepaticD0+ bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward 0 2619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_fwd MscHepaticD0+ bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward 1 2619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF982IVZ ENCSR342KXD Signal bigWig Heart right ventricle tissue male adult 43 years H3K27ac signal 2 2620 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ace63b3d-f0ec-404c-a21f-366c10ad424f/ENCFF982IVZ.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 43 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342KXD Signal\ track wgEncodeReg4Epigenetics_ENCFF982IVZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF525GJZ ENCSR350PUV Signal bigWig Spleen tissue female adult (51 years) POLR2AphosphoS5 ENCSR350PUV signal 2 2620 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/ff4fe4e6-f3e7-4a10-b8b9-2ddfeffbcef5/ENCFF525GJZ.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (51 years) POLR2AphosphoS5 ENCSR350PUV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350PUV Signal\ track wgEncodeReg4TfChip_ENCFF525GJZ\ type bigWig\ visibility full\ MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_rev MscHepaticD0- bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse 0 2620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_rev MscHepaticD0- bigWig Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse 1 2620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20hepatic%2c%20donor0.CNhs10845.11218-116B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - hepatic, donor0_CNhs10845_11218-116B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11218-116B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor0_CNhs10845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11218-116B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF040XSQ ENCSR342NCX Peak bigBed 5 Thymus tissue female embryo 113 days DNase peak 4 2621 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/3f635721-86f8-4efc-9657-6e1388fd16af/ENCFF040XSQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Thymus tissue female embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342NCX Peak\ track wgEncodeReg4Epigenetics_ENCFF040XSQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF511ZZZ ENCSR350XWY Peak bigBed 5 K562 C11orf30 peaks 4 2621 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/62e1d3d3-6d08-4ae6-b8bd-a5d93abaffca/ENCFF511ZZZ.bigBed\ labelFields none\ longLabel K562 C11orf30 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350XWY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF511ZZZ\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_fwd MscHepaticD1+ bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward 0 2621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_fwd MscHepaticD1+ bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward 1 2621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF203ACG ENCSR342NCX Signal bigWig Thymus tissue female embryo 113 days DNase signal 2 2622 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/32a55bd3-aaf8-410f-a185-0dc7894b2ea3/ENCFF203ACG.bigWig\ color 6,218,147\ longLabel Thymus tissue female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342NCX Signal\ track wgEncodeReg4Epigenetics_ENCFF203ACG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF690SBF ENCSR350XWY Signal bigWig K562 C11orf30 ENCSR350XWY signal 2 2622 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/cc27b4df-e7a7-4a69-896b-a6d8395f331a/ENCFF690SBF.bigWig\ color 254,75,173\ longLabel K562 C11orf30 ENCSR350XWY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR350XWY Signal\ track wgEncodeReg4TfChip_ENCFF690SBF\ type bigWig\ visibility full\ MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_rev MscHepaticD1- bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse 0 2622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_rev MscHepaticD1- bigWig Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse 1 2622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor1.CNhs11346.11538-120A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor1_CNhs11346_11538-120A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11538-120A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor1_CNhs11346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11538-120A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF299PGI ENCSR342OGI Peak bigBed 5 T-cell male adult 27 years DNase peak 4 2623 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/9cb5eb9f-6827-4889-b490-5c83f9cf2269/ENCFF299PGI.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 27 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342OGI Peak\ track wgEncodeReg4Epigenetics_ENCFF299PGI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF096ELQ ENCSR351NON Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF629 ZNF629 peaks 4 2623 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f4558a49-45a9-4430-b77d-293b5f863eaf/ENCFF096ELQ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF629 ZNF629 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR351NON Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF096ELQ\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_fwd MscHepaticD2+ bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward 0 2623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_fwd MscHepaticD2+ bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward 1 2623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF300VIJ ENCSR342OGI Signal bigWig T-cell male adult 27 years DNase signal 2 2624 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/82dca5b5-150d-46c3-a742-17c9e9e5d8c8/ENCFF300VIJ.bigWig\ color 6,218,147\ longLabel T-cell male adult 27 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR342OGI Signal\ track wgEncodeReg4Epigenetics_ENCFF300VIJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF671NEU ENCSR351NON Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF629 ZNF629 ENCSR351NON signal 2 2624 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/a15cd14e-ca8a-4bab-a507-3bfa3d35814b/ENCFF671NEU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF629 ZNF629 ENCSR351NON signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR351NON Signal\ track wgEncodeReg4TfChip_ENCFF671NEU\ type bigWig\ visibility full\ MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_rev MscHepaticD2- bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse 0 2624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscHepaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_rev MscHepaticD2- bigWig Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse 1 2624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20hepatic%2c%20donor2.CNhs12730.11618-122A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - hepatic, donor2_CNhs12730_11618-122A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11618-122A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscHepaticD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsHepaticDonor2_CNhs12730_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11618-122A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF239FOF ENCSR343DFX Peak bigBed 5 Spleen tissue female adult 41 years H3K27ac peak 4 2625 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/73e6e71f-6fb8-469e-94d6-95f7a7ca146d/ENCFF239FOF.bigBed\ color 181,145,0\ longLabel Spleen tissue female adult 41 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343DFX Peak\ track wgEncodeReg4Epigenetics_ENCFF239FOF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF394MUG ENCSR351SWL Peak bigBed 5 Middle frontal area 46 tissue female adult (79 years) CTCF peaks 4 2625 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/814da548-5c0e-4d04-818d-420b12473bc2/ENCFF394MUG.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (79 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR351SWL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF394MUG\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_fwd MscUmbilicalD0+ bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward 0 2625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_fwd MscUmbilicalD0+ bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward 1 2625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF634AAL ENCSR343DFX Signal bigWig Spleen tissue female adult 41 years H3K27ac signal 2 2626 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/9a172243-88e3-44ed-ac13-6d25e10401f0/ENCFF634AAL.bigWig\ color 181,145,0\ longLabel Spleen tissue female adult 41 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343DFX Signal\ track wgEncodeReg4Epigenetics_ENCFF634AAL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF924IJQ ENCSR351SWL Signal bigWig Middle frontal area 46 tissue female adult (79 years) CTCF ENCSR351SWL signal 2 2626 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/0aaa5f9f-d577-458c-ba02-d2d9f33b1522/ENCFF924IJQ.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (79 years) CTCF ENCSR351SWL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR351SWL Signal\ track wgEncodeReg4TfChip_ENCFF924IJQ\ type bigWig\ visibility full\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_rev MscUmbilicalD0- bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse 0 2626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_rev MscUmbilicalD0- bigWig Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse 1 2626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20stem%20cells%20-%20umbilical%2c%20donor0.CNhs12492.11214-116A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal stem cells - umbilical, donor0_CNhs12492_11214-116A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11214-116A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor0_CNhs12492_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11214-116A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF520HPZ ENCSR343RJH Peak bigBed 5 Spleen tissue male adult 37 years CTCF peak 4 2627 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/9a46598d-f8fe-4acf-bbdd-ff58f5992a2d/ENCFF520HPZ.bigBed\ color 0,176,240\ labelFields none\ longLabel Spleen tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343RJH Peak\ track wgEncodeReg4Epigenetics_ENCFF520HPZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF592QGS ENCSR352BJL Peak bigBed 5 K562 ZNF318 peaks 4 2627 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/4a5c0f42-b908-40a2-8cd3-0d645da7ee30/ENCFF592QGS.bigBed\ labelFields none\ longLabel K562 ZNF318 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR352BJL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF592QGS\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_fwd MscUmbilicalD1+ bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward 0 2627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_fwd MscUmbilicalD1+ bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward 1 2627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF688NHG ENCSR343RJH Signal bigWig Spleen tissue male adult 37 years CTCF signal 2 2628 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1558bd4d-8af6-4110-b2a9-ebf2bce00f16/ENCFF688NHG.bigWig\ color 0,176,240\ longLabel Spleen tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343RJH Signal\ track wgEncodeReg4Epigenetics_ENCFF688NHG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF868RTI ENCSR352BJL Signal bigWig K562 ZNF318 ENCSR352BJL signal 2 2628 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/f94b095e-fbb7-449e-845e-f2bae45229e5/ENCFF868RTI.bigWig\ color 254,75,173\ longLabel K562 ZNF318 ENCSR352BJL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR352BJL Signal\ track wgEncodeReg4TfChip_ENCFF868RTI\ type bigWig\ visibility full\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_rev MscUmbilicalD1- bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse 0 2628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_rev MscUmbilicalD1- bigWig Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse 1 2628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor1.CNhs11347.11539-120A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor1_CNhs11347_11539-120A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11539-120A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor1_CNhs11347_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11539-120A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF005OCP ENCSR343TQX Peak bigBed 5 K562 treated with 10 nM Bortezomib for 24 hours ATAC peak 4 2629 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/f99c50d6-e293-4a1f-8f5e-871a9b3b26aa/ENCFF005OCP.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Bortezomib for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343TQX Peak\ track wgEncodeReg4Epigenetics_ENCFF005OCP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF077DAP ENCSR352QSB Peak bigBed 5 Liver tissue female child (4 years) RXRA peaks 4 2629 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/56d999de-967e-40ef-ba84-6fd0bb8de3ac/ENCFF077DAP.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) RXRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR352QSB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF077DAP\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_fwd MscUmbilicalD2+ bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward 0 2629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_fwd MscUmbilicalD2+ bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward 1 2629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF439VLY ENCSR343TQX Signal bigWig K562 treated with 10 nM Bortezomib for 24 hours ATAC signal 2 2630 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/ef4e4387-b18b-4ebf-8e5b-e64f7e472233/ENCFF439VLY.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Bortezomib for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343TQX Signal\ track wgEncodeReg4Epigenetics_ENCFF439VLY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF859ZKV ENCSR352QSB Signal bigWig Liver tissue female child (4 years) RXRA ENCSR352QSB signal 2 2630 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/d92f0c4a-7a96-451f-8579-18d99201faaa/ENCFF859ZKV.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) RXRA ENCSR352QSB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR352QSB Signal\ track wgEncodeReg4TfChip_ENCFF859ZKV\ type bigWig\ visibility full\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_rev MscUmbilicalD2- bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse 0 2630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_rev MscUmbilicalD2- bigWig Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse 1 2630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor2.CNhs12102.11619-122A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor2_CNhs12102_11619-122A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11619-122A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor2_CNhs12102_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11619-122A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF364GJA ENCSR343ZOV Peak bigBed 5 Coronary artery tissue female adult 53 years H3K4me3 peak 4 2631 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/0d95ee2f-f624-4158-bcc6-4d2ec021f59a/ENCFF364GJA.bigBed\ color 255,0,0\ longLabel Coronary artery tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343ZOV Peak\ track wgEncodeReg4Epigenetics_ENCFF364GJA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF544GAS ENCSR353DFU Peak bigBed 5 Esophagus muscularis mucosa tissue female adult (51 years) CTCF peaks 4 2631 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/ebd7a670-6304-4800-9892-339f96389753/ENCFF544GAS.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR353DFU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF544GAS\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_fwd MscUmbilicalD3+ bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward 0 2631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_fwd MscUmbilicalD3+ bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward 1 2631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF811RQX ENCSR343ZOV Signal bigWig Coronary artery tissue female adult 53 years H3K4me3 signal 2 2632 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5ff838b2-59e4-4016-9ffd-1b70b492f321/ENCFF811RQX.bigWig\ color 255,0,0\ longLabel Coronary artery tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR343ZOV Signal\ track wgEncodeReg4Epigenetics_ENCFF811RQX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF398DDY ENCSR353DFU Signal bigWig Esophagus muscularis mucosa tissue female adult (51 years) CTCF ENCSR353DFU signal 2 2632 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1afdb21f-3876-4200-a8ad-8432ded6d92c/ENCFF398DDY.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) CTCF ENCSR353DFU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR353DFU Signal\ track wgEncodeReg4TfChip_ENCFF398DDY\ type bigWig\ visibility full\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_rev MscUmbilicalD3- bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse 0 2632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscUmbilicalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_rev MscUmbilicalD3- bigWig Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse 1 2632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20umbilical%2c%20donor3.CNhs12127.11700-123A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - umbilical, donor3_CNhs12127_11700-123A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11700-123A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscUmbilicalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsUmbilicalDonor3_CNhs12127_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11700-123A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF644NQV ENCSR344FLH Peak bigBed 5 Brain tissue female embryo 109 days DNase peak 4 2633 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c17afcbf-b6bd-447a-9dca-70fcc77d9d3a/ENCFF644NQV.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue female embryo 109 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR344FLH Peak\ track wgEncodeReg4Epigenetics_ENCFF644NQV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF623QJS ENCSR353HEP Peak bigBed 5 K562 TARDBP peaks 4 2633 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a9d97679-df6b-4e19-8f6f-0f12b33f3170/ENCFF623QJS.bigBed\ labelFields none\ longLabel K562 TARDBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR353HEP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF623QJS\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_fwd MscVertebralD1+ bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward 0 2633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscVertebralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_fwd MscVertebralD1+ bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward 1 2633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscVertebralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF055RCC ENCSR344FLH Signal bigWig Brain tissue female embryo 109 days DNase signal 2 2634 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/479d08ef-9fd5-41ba-800c-0df6926073a8/ENCFF055RCC.bigWig\ color 6,218,147\ longLabel Brain tissue female embryo 109 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR344FLH Signal\ track wgEncodeReg4Epigenetics_ENCFF055RCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF719FMY ENCSR353HEP Signal bigWig K562 TARDBP ENCSR353HEP signal 2 2634 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/0cd4e643-e3af-460b-873a-e0d994d04a3f/ENCFF719FMY.bigWig\ color 254,75,173\ longLabel K562 TARDBP ENCSR353HEP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR353HEP Signal\ track wgEncodeReg4TfChip_ENCFF719FMY\ type bigWig\ visibility full\ MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_rev MscVertebralD1- bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse 0 2634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscVertebralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_rev MscVertebralD1- bigWig Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse 1 2634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Vertebral%2c%20donor1.CNhs10846.11219-116B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Vertebral, donor1_CNhs10846_11219-116B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11219-116B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscVertebralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsVertebralDonor1_CNhs10846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11219-116B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF183BLP ENCSR344PHP Peak bigBed 5 Middle frontal area 46 tissue female adult 88 years H3K27ac peak 4 2635 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/f5f3eb35-98d8-4951-930c-3873600462d9/ENCFF183BLP.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 88 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR344PHP Peak\ track wgEncodeReg4Epigenetics_ENCFF183BLP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF116OUV ENCSR354FPG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B STAT5B peaks 4 2635 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/7f7f52d4-fc64-4c18-9531-672c7e098d5e/ENCFF116OUV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B STAT5B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR354FPG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF116OUV\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_fwd MscWharton'sJellyD1+ bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward 0 2635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscWharton'sJellyD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_fwd MscWharton'sJellyD1+ bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward 1 2635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscWharton'sJellyD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF371ZKC ENCSR344PHP Signal bigWig Middle frontal area 46 tissue female adult 88 years H3K27ac signal 2 2636 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/b3556db2-6f75-4a90-a302-f4ed38de93c2/ENCFF371ZKC.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 88 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR344PHP Signal\ track wgEncodeReg4Epigenetics_ENCFF371ZKC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF639TFO ENCSR354FPG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B STAT5B ENCSR354FPG signal 2 2636 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/965982ea-258b-4325-b7e1-b0f852d5f4dc/ENCFF639TFO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens STAT5B STAT5B ENCSR354FPG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR354FPG Signal\ track wgEncodeReg4TfChip_ENCFF639TFO\ type bigWig\ visibility full\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_rev MscWharton'sJellyD1- bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse 0 2636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscWharton'sJellyD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_rev MscWharton'sJellyD1- bigWig Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse 1 2636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Mesenchymal%20Stem%20Cells%20-%20Wharton%27s%20Jelly%2c%20donor1.CNhs11057.11548-120B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Mesenchymal Stem Cells - Wharton's Jelly, donor1_CNhs11057_11548-120B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11548-120B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscWharton'sJellyD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MesenchymalStemCellsWhartonsJellyDonor1_CNhs11057_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11548-120B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF220KFL ENCSR344TLI Peak bigBed 5 Right lobe of liver tissue female adult 53 years H3K4me3 peak 4 2637 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/81fd5901-43c3-4dfa-aa5d-a528c53ffd2b/ENCFF220KFL.bigBed\ color 255,0,0\ longLabel Right lobe of liver tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR344TLI Peak\ track wgEncodeReg4Epigenetics_ENCFF220KFL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF452YOY ENCSR355ALW Peak bigBed 5 Gastrocnemius medialis tissue female adult (51 years) CTCF peaks 4 2637 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/09/10/4395c27b-8c8e-45ed-986d-8c2e19f2ad44/ENCFF452YOY.bigBed\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR355ALW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF452YOY\ type bigBed 5\ useScore 1\ visibility squish\ MyoblastDonor1_CNhs10870_ctss_fwd MyoblastD1+ bigWig Myoblast, donor1_CNhs10870_11241-116D8_forward 0 2637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor1_CNhs10870_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_tpm_fwd MyoblastD1+ bigWig Myoblast, donor1_CNhs10870_11241-116D8_forward 1 2637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor1_CNhs10870_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF917LFF ENCSR344TLI Signal bigWig Right lobe of liver tissue female adult 53 years H3K4me3 signal 2 2638 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5308a223-8516-4e49-9eed-ef73fe2218ce/ENCFF917LFF.bigWig\ color 255,0,0\ longLabel Right lobe of liver tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR344TLI Signal\ track wgEncodeReg4Epigenetics_ENCFF917LFF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF643VTS ENCSR355ALW Signal bigWig Gastrocnemius medialis tissue female adult (51 years) CTCF ENCSR355ALW signal 2 2638 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9499e244-5792-4c57-a14c-2249ba17be9a/ENCFF643VTS.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (51 years) CTCF ENCSR355ALW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR355ALW Signal\ track wgEncodeReg4TfChip_ENCFF643VTS\ type bigWig\ visibility full\ MyoblastDonor1_CNhs10870_ctss_rev MyoblastD1- bigWig Myoblast, donor1_CNhs10870_11241-116D8_reverse 0 2638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor1_CNhs10870_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ MyoblastDonor1_CNhs10870_tpm_rev MyoblastD1- bigWig Myoblast, donor1_CNhs10870_11241-116D8_reverse 1 2638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor1.CNhs10870.11241-116D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor1_CNhs10870_11241-116D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11241-116D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor1_CNhs10870_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11241-116D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF719YRB ENCSR344ZTM Peak bigBed 5 Thoracic aorta tissue male adult 54 years ATAC peak 4 2639 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/f8809e61-a01c-4435-ac3a-4143ed30a64e/ENCFF719YRB.bigBed\ color 2,199,185\ longLabel Thoracic aorta tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR344ZTM Peak\ track wgEncodeReg4Epigenetics_ENCFF719YRB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF505HGD ENCSR355PMV Peak bigBed 5 Heart left ventricle tissue male adult (40 years) CTCF peaks 4 2639 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7dbf30a5-3986-4b45-a01f-abbe37e5d2da/ENCFF505HGD.bigBed\ labelFields none\ longLabel Heart left ventricle tissue male adult (40 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR355PMV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF505HGD\ type bigBed 5\ useScore 1\ visibility squish\ MyoblastDonor2_CNhs11965_ctss_fwd MyoblastD2+ bigWig Myoblast, donor2_CNhs11965_11322-117D8_forward 0 2639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor2_CNhs11965_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_tpm_fwd MyoblastD2+ bigWig Myoblast, donor2_CNhs11965_11322-117D8_forward 1 2639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor2_CNhs11965_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF101QQB ENCSR344ZTM Signal bigWig Thoracic aorta tissue male adult 54 years ATAC signal 2 2640 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/bb311070-f0d7-4727-986e-252dac90a508/ENCFF101QQB.bigWig\ color 2,199,185\ longLabel Thoracic aorta tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR344ZTM Signal\ track wgEncodeReg4Epigenetics_ENCFF101QQB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF843XSG ENCSR355PMV Signal bigWig Heart left ventricle tissue male adult (40 years) CTCF ENCSR355PMV signal 2 2640 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/660a43da-02a4-4ebc-8ab0-6ad4fadc305c/ENCFF843XSG.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (40 years) CTCF ENCSR355PMV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR355PMV Signal\ track wgEncodeReg4TfChip_ENCFF843XSG\ type bigWig\ visibility full\ MyoblastDonor2_CNhs11965_ctss_rev MyoblastD2- bigWig Myoblast, donor2_CNhs11965_11322-117D8_reverse 0 2640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor2_CNhs11965_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ MyoblastDonor2_CNhs11965_tpm_rev MyoblastD2- bigWig Myoblast, donor2_CNhs11965_11322-117D8_reverse 1 2640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor2.CNhs11965.11322-117D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor2_CNhs11965_11322-117D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11322-117D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor2_CNhs11965_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11322-117D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF110JJB ENCSR345NVR Peak bigBed 5 HG03460 ATAC peak 4 2641 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/5061939e-60fc-47e3-a2cc-dcfe1f13a332/ENCFF110JJB.bigBed\ color 2,199,185\ longLabel HG03460 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR345NVR Peak\ track wgEncodeReg4Epigenetics_ENCFF110JJB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF561IAJ ENCSR356ECR Peak bigBed 5 HepG2 RBM22 peaks 4 2641 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/8855234f-fab9-436e-9172-a6c2c60137be/ENCFF561IAJ.bigBed\ labelFields none\ longLabel HepG2 RBM22 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR356ECR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF561IAJ\ type bigBed 5\ useScore 1\ visibility squish\ MyoblastDonor3_CNhs11908_ctss_fwd MyoblastD3+ bigWig Myoblast, donor3_CNhs11908_11398-118D3_forward 0 2641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor3_CNhs11908_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_tpm_fwd MyoblastD3+ bigWig Myoblast, donor3_CNhs11908_11398-118D3_forward 1 2641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track MyoblastDonor3_CNhs11908_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF413WLZ ENCSR345NVR Signal bigWig HG03460 ATAC signal 2 2642 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/af428018-1ccd-4681-81c5-1b9131c7bbb2/ENCFF413WLZ.bigWig\ color 2,199,185\ longLabel HG03460 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR345NVR Signal\ track wgEncodeReg4Epigenetics_ENCFF413WLZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF632OSR ENCSR356ECR Signal bigWig HepG2 RBM22 ENCSR356ECR signal 2 2642 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/334d1225-eeb3-4c9e-9a0f-e139064e35c3/ENCFF632OSR.bigWig\ color 137,152,82\ longLabel HepG2 RBM22 ENCSR356ECR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR356ECR Signal\ track wgEncodeReg4TfChip_ENCFF632OSR\ type bigWig\ visibility full\ MyoblastDonor3_CNhs11908_ctss_rev MyoblastD3- bigWig Myoblast, donor3_CNhs11908_11398-118D3_reverse 0 2642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor3_CNhs11908_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ MyoblastDonor3_CNhs11908_tpm_rev MyoblastD3- bigWig Myoblast, donor3_CNhs11908_11398-118D3_reverse 1 2642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%2c%20donor3.CNhs11908.11398-118D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast, donor3_CNhs11908_11398-118D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11398-118D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track MyoblastDonor3_CNhs11908_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11398-118D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF627HXF ENCSR345QKG Peak bigBed 5 Placental basal plate tissue male embryo 38 weeks H3K4me3 peak 4 2643 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/32ecaa9d-7971-4bfb-9161-813ec323e9f0/ENCFF627HXF.bigBed\ color 255,0,0\ longLabel Placental basal plate tissue male embryo 38 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR345QKG Peak\ track wgEncodeReg4Epigenetics_ENCFF627HXF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF610EME ENCSR357QJR Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5A ZSCAN5A peaks 4 2643 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/81b26b96-d307-4e6d-8f55-9c47ac84444c/ENCFF610EME.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5A ZSCAN5A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR357QJR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF610EME\ type bigBed 5\ useScore 1\ visibility squish\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_fwd NasalEpithelialCellsD1Tr1+ bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward 0 2643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_fwd NasalEpithelialCellsD1Tr1+ bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward 1 2643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF137PGF ENCSR345QKG Signal bigWig Placental basal plate tissue male embryo 38 weeks H3K4me3 signal 2 2644 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c1b06cee-7037-4264-946a-37b141d6ef11/ENCFF137PGF.bigWig\ color 255,0,0\ longLabel Placental basal plate tissue male embryo 38 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR345QKG Signal\ track wgEncodeReg4Epigenetics_ENCFF137PGF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF257GZJ ENCSR357QJR Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5A ZSCAN5A ENCSR357QJR signal 2 2644 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/2deb33e1-9bdf-49c3-b80c-3e89f937165a/ENCFF257GZJ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5A ZSCAN5A ENCSR357QJR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR357QJR Signal\ track wgEncodeReg4TfChip_ENCFF257GZJ\ type bigWig\ visibility full\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_rev NasalEpithelialCellsD1Tr1- bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse 0 2644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_rev NasalEpithelialCellsD1Tr1- bigWig nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse 1 2644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor1%2c%20tech_rep1.CNhs12589.12226-129F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor1, tech_rep1_CNhs12589_12226-129F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12226-129F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD1Tr1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor1TechRep1_CNhs12589_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12226-129F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF241CKK ENCSR345XUN Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H ATAC peak 4 2645 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/1d47e6f0-de84-4937-935a-4d5e57a2e0eb/ENCFF241CKK.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR345XUN Peak\ track wgEncodeReg4Epigenetics_ENCFF241CKK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF764EFJ ENCSR357YPP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF124 ZNF124 peaks 4 2645 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/de765b85-f9d2-4b09-bbb2-0803189f9837/ENCFF764EFJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF124 ZNF124 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR357YPP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF764EFJ\ type bigBed 5\ useScore 1\ visibility squish\ NasalEpithelialCellsDonor2_CNhs12574_ctss_fwd NasalEpithelialCellsD2+ bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward 0 2645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor2_CNhs12574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_tpm_fwd NasalEpithelialCellsD2+ bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward 1 2645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NasalEpithelialCellsDonor2_CNhs12574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF472DVQ ENCSR345XUN Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H ATAC signal 2 2646 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/d4855250-3cb2-465e-a8ab-946208a14d7e/ENCFF472DVQ.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR345XUN Signal\ track wgEncodeReg4Epigenetics_ENCFF472DVQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF765AQE ENCSR357YPP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF124 ZNF124 ENCSR357YPP signal 2 2646 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/dc5689b7-1c62-4794-bb33-44aa7197225e/ENCFF765AQE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF124 ZNF124 ENCSR357YPP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR357YPP Signal\ track wgEncodeReg4TfChip_ENCFF765AQE\ type bigWig\ visibility full\ NasalEpithelialCellsDonor2_CNhs12574_ctss_rev NasalEpithelialCellsD2- bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse 0 2646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NasalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor2_CNhs12574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ NasalEpithelialCellsDonor2_CNhs12574_tpm_rev NasalEpithelialCellsD2- bigWig nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse 1 2646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nasal%20epithelial%20cells%2c%20donor2.CNhs12574.12227-129F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nasal epithelial cells, donor2_CNhs12574_12227-129F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12227-129F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NasalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NasalEpithelialCellsDonor2_CNhs12574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12227-129F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF672EGG ENCSR346FVK Peak bigBed 5 Vagina tissue female adult 51 years H3K27ac peak 4 2647 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/4515717f-6ad4-42f1-863c-e00d792798d9/ENCFF672EGG.bigBed\ color 181,145,0\ longLabel Vagina tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346FVK Peak\ track wgEncodeReg4Epigenetics_ENCFF672EGG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF487TUI ENCSR359LOD Peak bigBed 5 PC-3 CTCF peaks 4 2647 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/93a68bd5-1e90-4400-93ad-27708be5f40a/ENCFF487TUI.bigBed\ labelFields none\ longLabel PC-3 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR359LOD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF487TUI\ type bigBed 5\ useScore 1\ visibility squish\ NaturalKillerCellsDonor1_CNhs10859_ctss_fwd NaturalKillerCellsD1+ bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward 0 2647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor1_CNhs10859_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_tpm_fwd NaturalKillerCellsD1+ bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward 1 2647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor1_CNhs10859_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF092VQF ENCSR346FVK Signal bigWig Vagina tissue female adult 51 years H3K27ac signal 2 2648 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/7ba5063f-c33e-41af-8a04-18026bb5d3cc/ENCFF092VQF.bigWig\ color 181,145,0\ longLabel Vagina tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346FVK Signal\ track wgEncodeReg4Epigenetics_ENCFF092VQF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF756ESH ENCSR359LOD Signal bigWig PC-3 CTCF ENCSR359LOD signal 2 2648 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/57b1ad73-2dee-4113-816c-cb2cae7ef5de/ENCFF756ESH.bigWig\ color 140,140,140\ longLabel PC-3 CTCF ENCSR359LOD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR359LOD Signal\ track wgEncodeReg4TfChip_ENCFF756ESH\ type bigWig\ visibility full\ NaturalKillerCellsDonor1_CNhs10859_ctss_rev NaturalKillerCellsD1- bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse 0 2648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor1_CNhs10859_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor1_CNhs10859_tpm_rev NaturalKillerCellsD1- bigWig Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse 1 2648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor1.CNhs10859.11230-116C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor1_CNhs10859_11230-116C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11230-116C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor1_CNhs10859_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11230-116C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF017VJJ ENCSR346IHH Peak bigBed 5 Daoy DNase peak 4 2649 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/1b462985-c9fc-4c69-912c-d6f9996ce96d/ENCFF017VJJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Daoy DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346IHH Peak\ track wgEncodeReg4Epigenetics_ENCFF017VJJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF306QPU ENCSR359NFW Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 peaks 4 2649 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d2398a3e-385f-4926-86aa-ec801cec6bc6/ENCFF306QPU.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR359NFW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF306QPU\ type bigBed 5\ useScore 1\ visibility squish\ NaturalKillerCellsDonor2_CNhs11957_ctss_fwd NaturalKillerCellsD2+ bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward 0 2649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor2_CNhs11957_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_tpm_fwd NaturalKillerCellsD2+ bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward 1 2649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor2_CNhs11957_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF119HYJ ENCSR346IHH Signal bigWig Daoy DNase signal 2 2650 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/c2ad5c3c-a601-476f-9020-576c8992ad79/ENCFF119HYJ.bigWig\ color 6,218,147\ longLabel Daoy DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346IHH Signal\ track wgEncodeReg4Epigenetics_ENCFF119HYJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF594UNZ ENCSR359NFW Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 ENCSR359NFW signal 2 2650 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/8a542037-acbe-4217-8909-1ff0980313a5/ENCFF594UNZ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 ENCSR359NFW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR359NFW Signal\ track wgEncodeReg4TfChip_ENCFF594UNZ\ type bigWig\ visibility full\ NaturalKillerCellsDonor2_CNhs11957_ctss_rev NaturalKillerCellsD2- bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse 0 2650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor2_CNhs11957_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor2_CNhs11957_tpm_rev NaturalKillerCellsD2- bigWig Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse 1 2650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor2.CNhs11957.11311-117C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor2_CNhs11957_11311-117C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11311-117C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor2_CNhs11957_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11311-117C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF814LKB ENCSR346JWH Peak bigBed 5 A673 DNase peak 4 2651 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/8c7be7ea-4a4b-44f5-be85-20ff93bd21a7/ENCFF814LKB.bigBed\ color 6,218,147\ labelFields none\ longLabel A673 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346JWH Peak\ track wgEncodeReg4Epigenetics_ENCFF814LKB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF462DCD ENCSR359TWG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXD1 HOXD1 peaks 4 2651 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/74d8e722-80c3-46ef-b76e-a55cabf920b4/ENCFF462DCD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXD1 HOXD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR359TWG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF462DCD\ type bigBed 5\ useScore 1\ visibility squish\ NaturalKillerCellsDonor3_CNhs12001_ctss_fwd NaturalKillerCellsD3+ bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward 0 2651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor3_CNhs12001_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor3_CNhs12001_tpm_fwd NaturalKillerCellsD3+ bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward 1 2651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NaturalKillerCellsDonor3_CNhs12001_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF816IIS ENCSR346JWH Signal bigWig A673 DNase signal 2 2652 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/5d617f00-eccf-4a12-bf93-98e0614c9386/ENCFF816IIS.bigWig\ color 6,218,147\ longLabel A673 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346JWH Signal\ track wgEncodeReg4Epigenetics_ENCFF816IIS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF391RIX ENCSR359TWG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXD1 HOXD1 ENCSR359TWG signal 2 2652 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4271d78a-bdac-41eb-860c-06936b1cb5b8/ENCFF391RIX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXD1 HOXD1 ENCSR359TWG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR359TWG Signal\ track wgEncodeReg4TfChip_ENCFF391RIX\ type bigWig\ visibility full\ NaturalKillerCellsDonor3_CNhs12001_ctss_rev NaturalKillerCellsD3- bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse 0 2652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NaturalKillerCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor3_CNhs12001_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ NaturalKillerCellsDonor3_CNhs12001_tpm_rev NaturalKillerCellsD3- bigWig Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse 1 2652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Natural%20Killer%20Cells%2c%20donor3.CNhs12001.11387-118C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Natural Killer Cells, donor3_CNhs12001_11387-118C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11387-118C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NaturalKillerCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NaturalKillerCellsDonor3_CNhs12001_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11387-118C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF906KBR ENCSR346KKE Peak bigBed 5 Skeletal muscle tissue tissue male adult 54 years H3K4me3 peak 4 2653 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/933d7ce8-4436-418e-a938-f1e32596e79b/ENCFF906KBR.bigBed\ color 255,0,0\ longLabel Skeletal muscle tissue tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346KKE Peak\ track wgEncodeReg4Epigenetics_ENCFF906KBR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF406RGZ ENCSR360BLQ Peak bigBed 5 Esophagus muscularis mucosa tissue male adult (37 years) EP300 peaks 4 2653 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/c0cc4b8c-bdff-48e2-8a49-98038ad297b0/ENCFF406RGZ.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR360BLQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF406RGZ\ type bigBed 5\ useScore 1\ visibility squish\ NeuralStemCellsDonor1_CNhs11063_ctss_fwd NeuralStemCellsD1+ bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_forward 0 2653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuralStemCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuralStemCellsDonor1_CNhs11063_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_tpm_fwd NeuralStemCellsD1+ bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_forward 1 2653 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuralStemCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuralStemCellsDonor1_CNhs11063_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF288QMN ENCSR346KKE Signal bigWig Skeletal muscle tissue tissue male adult 54 years H3K4me3 signal 2 2654 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/72ed4293-acc2-4768-8e6a-1fb35c87927e/ENCFF288QMN.bigWig\ color 255,0,0\ longLabel Skeletal muscle tissue tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346KKE Signal\ track wgEncodeReg4Epigenetics_ENCFF288QMN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF013TEG ENCSR360BLQ Signal bigWig Esophagus muscularis mucosa tissue male adult (37 years) EP300 ENCSR360BLQ signal 2 2654 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/72f7e081-e04f-4367-a2fc-f60140b465ad/ENCFF013TEG.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) EP300 ENCSR360BLQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR360BLQ Signal\ track wgEncodeReg4TfChip_ENCFF013TEG\ type bigWig\ visibility full\ NeuralStemCellsDonor1_CNhs11063_ctss_rev NeuralStemCellsD1- bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_reverse 0 2654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuralStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor1_CNhs11063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor1_CNhs11063_tpm_rev NeuralStemCellsD1- bigWig Neural stem cells, donor1_CNhs11063_11275-116H6_reverse 1 2654 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor1.CNhs11063.11275-116H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor1_CNhs11063_11275-116H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11275-116H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuralStemCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor1_CNhs11063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11275-116H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF128LEM ENCSR346UYQ Peak bigBed 5 IgD-negative memory B cell H3K27ac peak 4 2655 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/40f8cb97-f46c-4f9a-8dda-7232a7f11931/ENCFF128LEM.bigBed\ color 181,145,0\ longLabel IgD-negative memory B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346UYQ Peak\ track wgEncodeReg4Epigenetics_ENCFF128LEM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF133OLU ENCSR360HRA Peak bigBed 5 K562 KDM1A peaks 4 2655 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/5b630c25-f228-4567-ae59-107b020b0332/ENCFF133OLU.bigBed\ labelFields none\ longLabel K562 KDM1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR360HRA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF133OLU\ type bigBed 5\ useScore 1\ visibility squish\ NeuralStemCellsDonor2_CNhs11384_ctss_fwd NeuralStemCellsD2+ bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_forward 0 2655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11352-117H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuralStemCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuralStemCellsDonor2_CNhs11384_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor2_CNhs11384_tpm_fwd NeuralStemCellsD2+ bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_forward 1 2655 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11352-117H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuralStemCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuralStemCellsDonor2_CNhs11384_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF116HTK ENCSR346UYQ Signal bigWig IgD-negative memory B cell H3K27ac signal 2 2656 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/4fa7fcaf-0d7c-42fc-9560-f52abb664093/ENCFF116HTK.bigWig\ color 181,145,0\ longLabel IgD-negative memory B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR346UYQ Signal\ track wgEncodeReg4Epigenetics_ENCFF116HTK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF557GFQ ENCSR360HRA Signal bigWig K562 KDM1A ENCSR360HRA signal 2 2656 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/20b4d211-f8f2-4a3d-a323-717926c8cba7/ENCFF557GFQ.bigWig\ color 254,75,173\ longLabel K562 KDM1A ENCSR360HRA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR360HRA Signal\ track wgEncodeReg4TfChip_ENCFF557GFQ\ type bigWig\ visibility full\ NeuralStemCellsDonor2_CNhs11384_ctss_rev NeuralStemCellsD2- bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_reverse 0 2656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11352-117H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuralStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor2_CNhs11384_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ NeuralStemCellsDonor2_CNhs11384_tpm_rev NeuralStemCellsD2- bigWig Neural stem cells, donor2_CNhs11384_11352-117H2_reverse 1 2656 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neural%20stem%20cells%2c%20donor2.CNhs11384.11352-117H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neural stem cells, donor2_CNhs11384_11352-117H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11352-117H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuralStemCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuralStemCellsDonor2_CNhs11384_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11352-117H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF158YHJ ENCSR348YRH Peak bigBed 5 Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak 4 2657 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/07e5214c-5090-4d6f-be25-9792d22b5d13/ENCFF158YHJ.bigBed\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR348YRH Peak\ track wgEncodeReg4Epigenetics_ENCFF158YHJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF937PTG ENCSR360JOC Peak bigBed 5 MCF-7 CHD1 peaks 4 2657 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/60a41a58-400e-4941-9cc0-2921e83ea7aa/ENCFF937PTG.bigBed\ labelFields none\ longLabel MCF-7 CHD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR360JOC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF937PTG\ type bigBed 5\ useScore 1\ visibility squish\ NeuronsDonor1_CNhs12338_ctss_fwd NeuronsD1+ bigWig Neurons, donor1_CNhs12338_11494-119E9_forward 0 2657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neurons, donor1_CNhs12338_11494-119E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor1_CNhs12338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ NeuronsDonor1_CNhs12338_tpm_fwd NeuronsD1+ bigWig Neurons, donor1_CNhs12338_11494-119E9_forward 1 2657 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neurons, donor1_CNhs12338_11494-119E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor1_CNhs12338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF415QNO ENCSR348YRH Signal bigWig Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal 2 2658 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/3429d76f-3100-4cb9-8b08-0cacd139eb05/ENCFF415QNO.bigWig\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR348YRH Signal\ track wgEncodeReg4Epigenetics_ENCFF415QNO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF838MOX ENCSR360JOC Signal bigWig MCF-7 CHD1 ENCSR360JOC signal 2 2658 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/47c3c7ef-a475-4e61-8a83-25307d1c5fab/ENCFF838MOX.bigWig\ color 65,171,173\ longLabel MCF-7 CHD1 ENCSR360JOC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR360JOC Signal\ track wgEncodeReg4TfChip_ENCFF838MOX\ type bigWig\ visibility full\ NeuronsDonor1_CNhs12338_ctss_rev NeuronsD1- bigWig Neurons, donor1_CNhs12338_11494-119E9_reverse 0 2658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neurons, donor1_CNhs12338_11494-119E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor1_CNhs12338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ NeuronsDonor1_CNhs12338_tpm_rev NeuronsD1- bigWig Neurons, donor1_CNhs12338_11494-119E9_reverse 1 2658 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor1.CNhs12338.11494-119E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neurons, donor1_CNhs12338_11494-119E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11494-119E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor1_CNhs12338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11494-119E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF664APD ENCSR349GPJ Peak bigBed 5 Peyer's patch tissue male adult 37 years H3K4me3 peak 4 2659 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/d1388b0c-afed-4adc-b463-a20c504dbdf1/ENCFF664APD.bigBed\ color 255,0,0\ longLabel Peyer's patch tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR349GPJ Peak\ track wgEncodeReg4Epigenetics_ENCFF664APD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF767CVC ENCSR361KVZ Peak bigBed 5 Stomach tissue female adult (51 years) CTCF peaks 4 2659 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/3c529427-8f3f-4099-96c8-7d758857fc97/ENCFF767CVC.bigBed\ labelFields none\ longLabel Stomach tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR361KVZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF767CVC\ type bigBed 5\ useScore 1\ visibility squish\ NeuronsDonor2_CNhs12726_ctss_fwd NeuronsD2+ bigWig Neurons, donor2_CNhs12726_11574-120E8_forward 0 2659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neurons, donor2_CNhs12726_11574-120E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor2_CNhs12726_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8\ urlLabel FANTOM5 Details:\ NeuronsDonor2_CNhs12726_tpm_fwd NeuronsD2+ bigWig Neurons, donor2_CNhs12726_11574-120E8_forward 1 2659 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neurons, donor2_CNhs12726_11574-120E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor2_CNhs12726_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF996ZNX ENCSR349GPJ Signal bigWig Peyer's patch tissue male adult 37 years H3K4me3 signal 2 2660 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/e0455b7b-cad1-4b96-938a-5d14dabb750c/ENCFF996ZNX.bigWig\ color 255,0,0\ longLabel Peyer's patch tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR349GPJ Signal\ track wgEncodeReg4Epigenetics_ENCFF996ZNX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF919OEF ENCSR361KVZ Signal bigWig Stomach tissue female adult (51 years) CTCF ENCSR361KVZ signal 2 2660 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/5797e03c-ae21-4706-b653-78f56ae5bc40/ENCFF919OEF.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (51 years) CTCF ENCSR361KVZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR361KVZ Signal\ track wgEncodeReg4TfChip_ENCFF919OEF\ type bigWig\ visibility full\ NeuronsDonor2_CNhs12726_ctss_rev NeuronsD2- bigWig Neurons, donor2_CNhs12726_11574-120E8_reverse 0 2660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neurons, donor2_CNhs12726_11574-120E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor2_CNhs12726_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8\ urlLabel FANTOM5 Details:\ NeuronsDonor2_CNhs12726_tpm_rev NeuronsD2- bigWig Neurons, donor2_CNhs12726_11574-120E8_reverse 1 2660 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor2.CNhs12726.11574-120E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neurons, donor2_CNhs12726_11574-120E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11574-120E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor2_CNhs12726_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11574-120E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF527PGO ENCSR349NAK Peak bigBed 5 Endodermal cell originated from H1 H3K27ac peak 4 2661 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/740f9791-3a07-434e-86b7-b6042ea928fe/ENCFF527PGO.bigBed\ color 181,145,0\ longLabel Endodermal cell originated from H1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR349NAK Peak\ track wgEncodeReg4Epigenetics_ENCFF527PGO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF750ZWM ENCSR362CPB Peak bigBed 5 HepG2 HDAC1 peaks 4 2661 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/e08a413f-2902-417b-8156-33e6b49ca465/ENCFF750ZWM.bigBed\ labelFields none\ longLabel HepG2 HDAC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR362CPB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF750ZWM\ type bigBed 5\ useScore 1\ visibility squish\ NeuronsDonor3_CNhs13815_ctss_fwd NeuronsD3+ bigWig Neurons, donor3_CNhs13815_11655-122E8_forward 0 2661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor3.CNhs13815.11655-122E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neurons, donor3_CNhs13815_11655-122E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11655-122E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor3_CNhs13815_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8\ urlLabel FANTOM5 Details:\ NeuronsDonor3_CNhs13815_tpm_fwd NeuronsD3+ bigWig Neurons, donor3_CNhs13815_11655-122E8_forward 1 2661 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor3.CNhs13815.11655-122E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neurons, donor3_CNhs13815_11655-122E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11655-122E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeuronsDonor3_CNhs13815_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF466QNQ ENCSR349NAK Signal bigWig Endodermal cell originated from H1 H3K27ac signal 2 2662 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/a9001f35-967c-4bfc-86ca-c9bf8433b162/ENCFF466QNQ.bigWig\ color 181,145,0\ longLabel Endodermal cell originated from H1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR349NAK Signal\ track wgEncodeReg4Epigenetics_ENCFF466QNQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF750JYD ENCSR362CPB Signal bigWig HepG2 HDAC1 ENCSR362CPB signal 2 2662 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/b91ed726-5b82-47bd-8675-25fd8afafab9/ENCFF750JYD.bigWig\ color 137,152,82\ longLabel HepG2 HDAC1 ENCSR362CPB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR362CPB Signal\ track wgEncodeReg4TfChip_ENCFF750JYD\ type bigWig\ visibility full\ NeuronsDonor3_CNhs13815_ctss_rev NeuronsD3- bigWig Neurons, donor3_CNhs13815_11655-122E8_reverse 0 2662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor3.CNhs13815.11655-122E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neurons, donor3_CNhs13815_11655-122E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11655-122E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeuronsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor3_CNhs13815_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8\ urlLabel FANTOM5 Details:\ NeuronsDonor3_CNhs13815_tpm_rev NeuronsD3- bigWig Neurons, donor3_CNhs13815_11655-122E8_reverse 1 2662 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neurons%2c%20donor3.CNhs13815.11655-122E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neurons, donor3_CNhs13815_11655-122E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11655-122E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeuronsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeuronsDonor3_CNhs13815_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11655-122E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF796LGR ENCSR349VAW Peak bigBed 5 SJSA1 H3K27ac peak 4 2663 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/bddd9cde-5464-4630-9492-a5a27f5a313a/ENCFF796LGR.bigBed\ color 181,145,0\ longLabel SJSA1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR349VAW Peak\ track wgEncodeReg4Epigenetics_ENCFF796LGR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF086UMQ ENCSR362NWP Peak bigBed 5 HepG2 ZNF24 peaks 4 2663 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8f76d531-a894-48cd-a6e0-abab4a3ee6a6/ENCFF086UMQ.bigBed\ labelFields none\ longLabel HepG2 ZNF24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR362NWP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF086UMQ\ type bigBed 5\ useScore 1\ visibility squish\ NeutrophilsDonor1_CNhs10862_ctss_fwd NeutrophilsD1+ bigWig Neutrophils, donor1_CNhs10862_11233-116C9_forward 0 2663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor1.CNhs10862.11233-116C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor1_CNhs10862_11233-116C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11233-116C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor1_CNhs10862_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor1_CNhs10862_tpm_fwd NeutrophilsD1+ bigWig Neutrophils, donor1_CNhs10862_11233-116C9_forward 1 2663 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor1.CNhs10862.11233-116C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor1_CNhs10862_11233-116C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11233-116C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor1_CNhs10862_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF194JWL ENCSR349VAW Signal bigWig SJSA1 H3K27ac signal 2 2664 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/7391a4d5-8c17-4c37-958d-a34963c1cd25/ENCFF194JWL.bigWig\ color 181,145,0\ longLabel SJSA1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR349VAW Signal\ track wgEncodeReg4Epigenetics_ENCFF194JWL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF768CSJ ENCSR362NWP Signal bigWig HepG2 ZNF24 ENCSR362NWP signal 2 2664 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/cfa3e1af-c526-45f3-ab6e-04c4dcb34099/ENCFF768CSJ.bigWig\ color 137,152,82\ longLabel HepG2 ZNF24 ENCSR362NWP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR362NWP Signal\ track wgEncodeReg4TfChip_ENCFF768CSJ\ type bigWig\ visibility full\ NeutrophilsDonor1_CNhs10862_ctss_rev NeutrophilsD1- bigWig Neutrophils, donor1_CNhs10862_11233-116C9_reverse 0 2664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor1.CNhs10862.11233-116C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor1_CNhs10862_11233-116C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11233-116C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor1_CNhs10862_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor1_CNhs10862_tpm_rev NeutrophilsD1- bigWig Neutrophils, donor1_CNhs10862_11233-116C9_reverse 1 2664 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor1.CNhs10862.11233-116C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor1_CNhs10862_11233-116C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11233-116C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor1_CNhs10862_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11233-116C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF188RSZ ENCSR350JZR Peak bigBed 5 Foreskin melanocyte male newborn H3K4me3 peak 4 2665 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6fc6176c-55c4-4342-80a9-706e3968c4c3/ENCFF188RSZ.bigBed\ color 255,0,0\ longLabel Foreskin melanocyte male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR350JZR Peak\ track wgEncodeReg4Epigenetics_ENCFF188RSZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF490FFQ ENCSR363ASY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF629 ZNF629 peaks 4 2665 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/b3ee6a38-1b19-44c8-83d5-d7a6dde4cbcd/ENCFF490FFQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF629 ZNF629 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR363ASY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF490FFQ\ type bigBed 5\ useScore 1\ visibility squish\ NeutrophilsDonor2_CNhs11959_ctss_fwd NeutrophilsD2+ bigWig Neutrophils, donor2_CNhs11959_11314-117C9_forward 0 2665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor2.CNhs11959.11314-117C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor2_CNhs11959_11314-117C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11314-117C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor2_CNhs11959_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor2_CNhs11959_tpm_fwd NeutrophilsD2+ bigWig Neutrophils, donor2_CNhs11959_11314-117C9_forward 1 2665 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor2.CNhs11959.11314-117C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor2_CNhs11959_11314-117C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11314-117C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor2_CNhs11959_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF261DSX ENCSR350JZR Signal bigWig Foreskin melanocyte male newborn H3K4me3 signal 2 2666 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7d03771e-450d-47ad-9b68-8571916ccdd1/ENCFF261DSX.bigWig\ color 255,0,0\ longLabel Foreskin melanocyte male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR350JZR Signal\ track wgEncodeReg4Epigenetics_ENCFF261DSX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF118BGF ENCSR363ASY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF629 ZNF629 ENCSR363ASY signal 2 2666 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/6fb25fe7-31ec-401f-82dc-176bba6a3ad8/ENCFF118BGF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF629 ZNF629 ENCSR363ASY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR363ASY Signal\ track wgEncodeReg4TfChip_ENCFF118BGF\ type bigWig\ visibility full\ NeutrophilsDonor2_CNhs11959_ctss_rev NeutrophilsD2- bigWig Neutrophils, donor2_CNhs11959_11314-117C9_reverse 0 2666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor2.CNhs11959.11314-117C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor2_CNhs11959_11314-117C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11314-117C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor2_CNhs11959_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9\ urlLabel FANTOM5 Details:\ NeutrophilsDonor2_CNhs11959_tpm_rev NeutrophilsD2- bigWig Neutrophils, donor2_CNhs11959_11314-117C9_reverse 1 2666 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor2.CNhs11959.11314-117C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor2_CNhs11959_11314-117C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11314-117C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor2_CNhs11959_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11314-117C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF244ZHV ENCSR350NBQ Peak bigBed 5 Heart left ventricle tissue male adult 54 years CTCF peak 4 2667 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/37acf077-74fb-4534-9c84-860f75bd3a06/ENCFF244ZHV.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart left ventricle tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR350NBQ Peak\ track wgEncodeReg4Epigenetics_ENCFF244ZHV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF780TIG ENCSR363XBR Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF488 ZNF488 peaks 4 2667 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/d8739cd8-0980-4515-88c4-e8c265e713a9/ENCFF780TIG.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF488 ZNF488 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR363XBR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF780TIG\ type bigBed 5\ useScore 1\ visibility squish\ NeutrophilsDonor3_CNhs11905_ctss_fwd NeutrophilsD3+ bigWig Neutrophils, donor3_CNhs11905_11390-118C4_forward 0 2667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor3.CNhs11905.11390-118C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor3_CNhs11905_11390-118C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11390-118C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor3_CNhs11905_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4\ urlLabel FANTOM5 Details:\ NeutrophilsDonor3_CNhs11905_tpm_fwd NeutrophilsD3+ bigWig Neutrophils, donor3_CNhs11905_11390-118C4_forward 1 2667 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor3.CNhs11905.11390-118C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Neutrophils, donor3_CNhs11905_11390-118C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11390-118C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NeutrophilsDonor3_CNhs11905_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF797NQV ENCSR350NBQ Signal bigWig Heart left ventricle tissue male adult 54 years CTCF signal 2 2668 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ad5ca35e-d727-4d38-b9e2-11e247f8263f/ENCFF797NQV.bigWig\ color 0,176,240\ longLabel Heart left ventricle tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR350NBQ Signal\ track wgEncodeReg4Epigenetics_ENCFF797NQV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF158QII ENCSR363XBR Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF488 ZNF488 ENCSR363XBR signal 2 2668 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/cfda3928-ddaa-4a6e-b1b8-54a6e50ffa06/ENCFF158QII.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF488 ZNF488 ENCSR363XBR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR363XBR Signal\ track wgEncodeReg4TfChip_ENCFF158QII\ type bigWig\ visibility full\ NeutrophilsDonor3_CNhs11905_ctss_rev NeutrophilsD3- bigWig Neutrophils, donor3_CNhs11905_11390-118C4_reverse 0 2668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor3.CNhs11905.11390-118C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor3_CNhs11905_11390-118C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11390-118C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NeutrophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor3_CNhs11905_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4\ urlLabel FANTOM5 Details:\ NeutrophilsDonor3_CNhs11905_tpm_rev NeutrophilsD3- bigWig Neutrophils, donor3_CNhs11905_11390-118C4_reverse 1 2668 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Neutrophils%2c%20donor3.CNhs11905.11390-118C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Neutrophils, donor3_CNhs11905_11390-118C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11390-118C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NeutrophilsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NeutrophilsDonor3_CNhs11905_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11390-118C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF718ZSS ENCSR350UKV Peak bigBed 5 Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak 4 2669 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/6ec51b37-4b31-4962-827f-e1c2aad10404/ENCFF718ZSS.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR350UKV Peak\ track wgEncodeReg4Epigenetics_ENCFF718ZSS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF200ZII ENCSR363XHT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HES4 HES4 peaks 4 2669 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/bb91a0dd-39c2-4549-8aff-bcd9d7b3772b/ENCFF200ZII.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HES4 HES4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR363XHT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF200ZII\ type bigBed 5\ useScore 1\ visibility squish\ NucleusPulposusCellDonor1_CNhs10881_ctss_fwd NucleusPulposusCellD1+ bigWig Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_forward 0 2669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor1.CNhs10881.11252-116F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11252-116F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor1_CNhs10881_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor1_CNhs10881_tpm_fwd NucleusPulposusCellD1+ bigWig Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_forward 1 2669 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor1.CNhs10881.11252-116F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11252-116F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor1_CNhs10881_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF979YMP ENCSR350UKV Signal bigWig Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal 2 2670 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/8ebf36bf-fb25-4526-8646-a9ac23118e5f/ENCFF979YMP.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR350UKV Signal\ track wgEncodeReg4Epigenetics_ENCFF979YMP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF195BNN ENCSR363XHT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HES4 HES4 ENCSR363XHT signal 2 2670 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/630b805d-a16e-40c4-b49f-ee1c7d1a5a00/ENCFF195BNN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HES4 HES4 ENCSR363XHT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR363XHT Signal\ track wgEncodeReg4TfChip_ENCFF195BNN\ type bigWig\ visibility full\ NucleusPulposusCellDonor1_CNhs10881_ctss_rev NucleusPulposusCellD1- bigWig Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse 0 2670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor1.CNhs10881.11252-116F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11252-116F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor1_CNhs10881_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor1_CNhs10881_tpm_rev NucleusPulposusCellD1- bigWig Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse 1 2670 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor1.CNhs10881.11252-116F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor1_CNhs10881_11252-116F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11252-116F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor1_CNhs10881_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11252-116F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF616JAE ENCSR351FWN Peak bigBed 5 Middle frontal area 46 tissue female adult 88 years DNase peak 4 2671 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/db1d6078-8b3b-4f15-8355-b80bc63c12f6/ENCFF616JAE.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 88 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR351FWN Peak\ track wgEncodeReg4Epigenetics_ENCFF616JAE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF968PWB ENCSR365GRX Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP37 ZFP37 peaks 4 2671 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/45046660-51e9-49bb-bedc-d40f4c3be421/ENCFF968PWB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP37 ZFP37 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR365GRX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF968PWB\ type bigBed 5\ useScore 1\ visibility squish\ NucleusPulposusCellDonor2_CNhs12019_ctss_fwd NucleusPulposusCellD2+ bigWig Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_forward 0 2671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor2.CNhs12019.11409-118E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11409-118E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor2_CNhs12019_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor2_CNhs12019_tpm_fwd NucleusPulposusCellD2+ bigWig Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_forward 1 2671 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor2.CNhs12019.11409-118E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11409-118E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor2_CNhs12019_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF052CPA ENCSR351FWN Signal bigWig Middle frontal area 46 tissue female adult 88 years DNase signal 2 2672 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/8105868a-2d0a-44ae-8714-6c43f6dcaa04/ENCFF052CPA.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 88 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR351FWN Signal\ track wgEncodeReg4Epigenetics_ENCFF052CPA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF562PMZ ENCSR365GRX Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP37 ZFP37 ENCSR365GRX signal 2 2672 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/04c22435-8e5e-4f15-997a-a231a68d3fd1/ENCFF562PMZ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP37 ZFP37 ENCSR365GRX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR365GRX Signal\ track wgEncodeReg4TfChip_ENCFF562PMZ\ type bigWig\ visibility full\ NucleusPulposusCellDonor2_CNhs12019_ctss_rev NucleusPulposusCellD2- bigWig Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_reverse 0 2672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor2.CNhs12019.11409-118E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11409-118E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor2_CNhs12019_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor2_CNhs12019_tpm_rev NucleusPulposusCellD2- bigWig Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_reverse 1 2672 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor2.CNhs12019.11409-118E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor2_CNhs12019_11409-118E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11409-118E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor2_CNhs12019_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11409-118E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF394MUG ENCSR351SWL Peak bigBed 5 Middle frontal area 46 tissue female adult 79 years CTCF peak 4 2673 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/814da548-5c0e-4d04-818d-420b12473bc2/ENCFF394MUG.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 79 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR351SWL Peak\ track wgEncodeReg4Epigenetics_ENCFF394MUG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF710YJO ENCSR365YCX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219 RNF219 peaks 4 2673 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/0bd362dd-cec6-49bc-823a-ddfd656f73c0/ENCFF710YJO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219 RNF219 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR365YCX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF710YJO\ type bigBed 5\ useScore 1\ visibility squish\ NucleusPulposusCellDonor3_CNhs12063_ctss_fwd NucleusPulposusCellD3+ bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward 0 2673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor3_CNhs12063_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor3_CNhs12063_tpm_fwd NucleusPulposusCellD3+ bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward 1 2673 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track NucleusPulposusCellDonor3_CNhs12063_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF924IJQ ENCSR351SWL Signal bigWig Middle frontal area 46 tissue female adult 79 years CTCF signal 2 2674 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/0aaa5f9f-d577-458c-ba02-d2d9f33b1522/ENCFF924IJQ.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 79 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR351SWL Signal\ track wgEncodeReg4Epigenetics_ENCFF924IJQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF801DHQ ENCSR365YCX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219 RNF219 ENCSR365YCX signal 2 2674 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/4803175d-e3c1-40cb-bd37-77449df46450/ENCFF801DHQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219 RNF219 ENCSR365YCX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR365YCX Signal\ track wgEncodeReg4TfChip_ENCFF801DHQ\ type bigWig\ visibility full\ NucleusPulposusCellDonor3_CNhs12063_ctss_rev NucleusPulposusCellD3- bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse 0 2674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusPulposusCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor3_CNhs12063_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ NucleusPulposusCellDonor3_CNhs12063_tpm_rev NucleusPulposusCellD3- bigWig Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse 1 2674 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Nucleus%20Pulposus%20Cell%2c%20donor3.CNhs12063.11462-119B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Nucleus Pulposus Cell, donor3_CNhs12063_11462-119B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11462-119B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusPulposusCellD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track NucleusPulposusCellDonor3_CNhs12063_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11462-119B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF544GAS ENCSR353DFU Peak bigBed 5 Esophagus muscularis mucosa tissue female adult 51 years CTCF peak 4 2675 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/ebd7a670-6304-4800-9892-339f96389753/ENCFF544GAS.bigBed\ color 0,176,240\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR353DFU Peak\ track wgEncodeReg4Epigenetics_ENCFF544GAS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF631YWI ENCSR367KYL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX3 ZHX3 peaks 4 2675 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/1e2ea9bf-4de5-47da-a87d-57362645b328/ENCFF631YWI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX3 ZHX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR367KYL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF631YWI\ type bigBed 5\ useScore 1\ visibility squish\ OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_fwd OlfactoryEpithelialCellsD1+ bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward 0 2675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_fwd OlfactoryEpithelialCellsD1+ bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward 1 2675 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF398DDY ENCSR353DFU Signal bigWig Esophagus muscularis mucosa tissue female adult 51 years CTCF signal 2 2676 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1afdb21f-3876-4200-a8ad-8432ded6d92c/ENCFF398DDY.bigWig\ color 0,176,240\ longLabel Esophagus muscularis mucosa tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR353DFU Signal\ track wgEncodeReg4Epigenetics_ENCFF398DDY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF837TKI ENCSR367KYL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX3 ZHX3 ENCSR367KYL signal 2 2676 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/818c5a86-8e0b-4d0a-a9bc-1478e3d63cb8/ENCFF837TKI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX3 ZHX3 ENCSR367KYL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR367KYL Signal\ track wgEncodeReg4TfChip_ENCFF837TKI\ type bigWig\ visibility full\ OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_rev OlfactoryEpithelialCellsD1- bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse 0 2676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor1_CNhs13816_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_rev OlfactoryEpithelialCellsD1- bigWig Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse 1 2676 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor1.CNhs13816.11933-125I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor1_CNhs13816_11933-125I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11933-125I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor1_CNhs13816_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11933-125I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF920REI ENCSR354FBA Peak bigBed 5 Small intestine tissue male embryo 115 days DNase peak 4 2677 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/84ba434a-65ce-48de-976c-5eae3653fb4f/ENCFF920REI.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue male embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR354FBA Peak\ track wgEncodeReg4Epigenetics_ENCFF920REI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF826EZZ ENCSR367UUC Peak bigBed 5 Gastroesophageal sphincter tissue female adult (51 years) POLR2A peaks 4 2677 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/f8861670-67d0-4aa0-a357-6fd610bf087f/ENCFF826EZZ.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR367UUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF826EZZ\ type bigBed 5\ useScore 1\ visibility squish\ OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_fwd OlfactoryEpithelialCellsD2+ bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward 0 2677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_fwd OlfactoryEpithelialCellsD2+ bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward 1 2677 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF236NXW ENCSR354FBA Signal bigWig Small intestine tissue male embryo 115 days DNase signal 2 2678 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/469f2e8e-a294-4e45-83fb-a0fe20a0aa95/ENCFF236NXW.bigWig\ color 6,218,147\ longLabel Small intestine tissue male embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR354FBA Signal\ track wgEncodeReg4Epigenetics_ENCFF236NXW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF665PFN ENCSR367UUC Signal bigWig Gastroesophageal sphincter tissue female adult (51 years) POLR2A ENCSR367UUC signal 2 2678 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/652de9d9-f0be-4ba4-86e4-ccd5def803a9/ENCFF665PFN.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue female adult (51 years) POLR2A ENCSR367UUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR367UUC Signal\ track wgEncodeReg4TfChip_ENCFF665PFN\ type bigWig\ visibility full\ OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_rev OlfactoryEpithelialCellsD2- bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse 0 2678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor2_CNhs13817_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_rev OlfactoryEpithelialCellsD2- bigWig Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse 1 2678 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor2.CNhs13817.11934-125I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor2_CNhs13817_11934-125I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11934-125I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor2_CNhs13817_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11934-125I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF353LSK ENCSR354XWM Peak bigBed 5 Neuronal stem cell originated from H9 H3K4me3 peak 4 2679 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/d1fd2954-8731-4021-bdfb-210299ef41d0/ENCFF353LSK.bigBed\ color 255,0,0\ longLabel Neuronal stem cell originated from H9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR354XWM Peak\ track wgEncodeReg4Epigenetics_ENCFF353LSK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF450WCS ENCSR369NGL Peak bigBed 5 GM23338 originated from GM23248 POLR2AphosphoS5 peaks 4 2679 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/757dd9fa-540c-456e-9dd8-e7c6881589ac/ENCFF450WCS.bigBed\ labelFields none\ longLabel GM23338 originated from GM23248 POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369NGL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF450WCS\ type bigBed 5\ useScore 1\ visibility squish\ OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_fwd OlfactoryEpithelialCellsD3+ bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward 0 2679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_fwd OlfactoryEpithelialCellsD3+ bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward 1 2679 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF679ECN ENCSR354XWM Signal bigWig Neuronal stem cell originated from H9 H3K4me3 signal 2 2680 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/c6c2c140-be7c-4fc4-9b78-ad8c418aeba2/ENCFF679ECN.bigWig\ color 255,0,0\ longLabel Neuronal stem cell originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR354XWM Signal\ track wgEncodeReg4Epigenetics_ENCFF679ECN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF779AEM ENCSR369NGL Signal bigWig GM23338 originated from GM23248 POLR2AphosphoS5 ENCSR369NGL signal 2 2680 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/e760937e-101b-48bc-b88f-8c86ce220a65/ENCFF779AEM.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 POLR2AphosphoS5 ENCSR369NGL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369NGL Signal\ track wgEncodeReg4TfChip_ENCFF779AEM\ type bigWig\ visibility full\ OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_rev OlfactoryEpithelialCellsD3- bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse 0 2680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor3_CNhs13818_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_rev OlfactoryEpithelialCellsD3- bigWig Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse 1 2680 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor3.CNhs13818.11935-125I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor3_CNhs13818_11935-125I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11935-125I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor3_CNhs13818_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11935-125I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF020XRA ENCSR354ZUG Peak bigBed 5 Uterus tissue female adult 53 years H3K4me3 peak 4 2681 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/d3ccd3e9-6ccc-4404-b437-ee78026611c0/ENCFF020XRA.bigBed\ color 255,0,0\ longLabel Uterus tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR354ZUG Peak\ track wgEncodeReg4Epigenetics_ENCFF020XRA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF433UFM ENCSR369RRE Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (74 years) CTCF peaks 4 2681 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/099b7155-698d-4403-82ff-13c233cc3232/ENCFF433UFM.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (74 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369RRE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF433UFM\ type bigBed 5\ useScore 1\ visibility squish\ OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_fwd OlfactoryEpithelialCellsD4+ bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward 0 2681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_fwd OlfactoryEpithelialCellsD4+ bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward 1 2681 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF370WIV ENCSR354ZUG Signal bigWig Uterus tissue female adult 53 years H3K4me3 signal 2 2682 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/44bc1470-6540-48cb-86b5-41865a94669f/ENCFF370WIV.bigWig\ color 255,0,0\ longLabel Uterus tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR354ZUG Signal\ track wgEncodeReg4Epigenetics_ENCFF370WIV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF326PAG ENCSR369RRE Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (74 years) CTCF ENCSR369RRE signal 2 2682 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/3b1c6281-7d0f-4049-ba92-93848ed3ede8/ENCFF326PAG.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (74 years) CTCF ENCSR369RRE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369RRE Signal\ track wgEncodeReg4TfChip_ENCFF326PAG\ type bigWig\ visibility full\ OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_rev OlfactoryEpithelialCellsD4- bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse 0 2682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryEpithelialCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor4_CNhs13819_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_rev OlfactoryEpithelialCellsD4- bigWig Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse 1 2682 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Olfactory%20epithelial%20cells%2c%20donor4.CNhs13819.11936-126A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Olfactory epithelial cells, donor4_CNhs13819_11936-126A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11936-126A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryEpithelialCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OlfactoryEpithelialCellsDonor4_CNhs13819_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11936-126A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF071DIF ENCSR355ALW Peak bigBed 5 Gastrocnemius medialis tissue female adult 51 years CTCF peak 4 2683 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/90e6f5a4-eead-4e9f-8d81-22fd1d195e9c/ENCFF071DIF.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355ALW Peak\ track wgEncodeReg4Epigenetics_ENCFF071DIF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF842SZN ENCSR369TCR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 peaks 4 2683 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2fbf8cdf-52af-44bf-9ae2-e6ca15d66863/ENCFF842SZN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369TCR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF842SZN\ type bigBed 5\ useScore 1\ visibility squish\ OligodendrocytePrecursorsDonor1_CNhs12586_ctss_fwd OligodendrocytePrecursorsD1+ bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward 0 2683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OligodendrocytePrecursorsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OligodendrocytePrecursorsDonor1_CNhs12586_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_tpm_fwd OligodendrocytePrecursorsD1+ bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward 1 2683 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OligodendrocytePrecursorsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OligodendrocytePrecursorsDonor1_CNhs12586_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF643VTS ENCSR355ALW Signal bigWig Gastrocnemius medialis tissue female adult 51 years CTCF signal 2 2684 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9499e244-5792-4c57-a14c-2249ba17be9a/ENCFF643VTS.bigWig\ color 0,176,240\ longLabel Gastrocnemius medialis tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355ALW Signal\ track wgEncodeReg4Epigenetics_ENCFF643VTS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF525OOB ENCSR369TCR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 ENCSR369TCR signal 2 2684 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/23842689-ed31-467d-9ef5-a5465cc2d77e/ENCFF525OOB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 ENCSR369TCR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369TCR Signal\ track wgEncodeReg4TfChip_ENCFF525OOB\ type bigWig\ visibility full\ OligodendrocytePrecursorsDonor1_CNhs12586_ctss_rev OligodendrocytePrecursorsD1- bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse 0 2684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OligodendrocytePrecursorsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OligodendrocytePrecursorsDonor1_CNhs12586_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ OligodendrocytePrecursorsDonor1_CNhs12586_tpm_rev OligodendrocytePrecursorsD1- bigWig Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse 1 2684 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Oligodendrocyte%20-%20precursors%2c%20donor1.CNhs12586.11496-119F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Oligodendrocyte - precursors, donor1_CNhs12586_11496-119F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11496-119F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OligodendrocytePrecursorsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OligodendrocytePrecursorsDonor1_CNhs12586_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11496-119F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF495KXZ ENCSR355ARR Peak bigBed 5 Effector CD4-positive, alpha-beta T cell male adult 56 years DNase peak 4 2685 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/46739212-abfe-4cb5-993a-3a2106a8f0cf/ENCFF495KXZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Effector CD4-positive, alpha-beta T cell male adult 56 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355ARR Peak\ track wgEncodeReg4Epigenetics_ENCFF495KXZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF823ERM ENCSR369YUK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 peaks 4 2685 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/fcabd8b9-2f1d-4095-bcd4-3369310d5417/ENCFF823ERM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369YUK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF823ERM\ type bigBed 5\ useScore 1\ visibility squish\ OsteoblastDonor1_CNhs11078_ctss_fwd OsteoblastD1+ bigWig Osteoblast, donor1_CNhs11078_11277-116H8_forward 0 2685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor1_CNhs11078_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_tpm_fwd OsteoblastD1+ bigWig Osteoblast, donor1_CNhs11078_11277-116H8_forward 1 2685 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor1_CNhs11078_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF376LFQ ENCSR355ARR Signal bigWig Effector CD4-positive, alpha-beta T cell male adult 56 years DNase signal 2 2686 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/b354b5fb-c4da-4dde-8d8c-ecfadc4d1bd1/ENCFF376LFQ.bigWig\ color 6,218,147\ longLabel Effector CD4-positive, alpha-beta T cell male adult 56 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355ARR Signal\ track wgEncodeReg4Epigenetics_ENCFF376LFQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF832YNR ENCSR369YUK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 ENCSR369YUK signal 2 2686 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f9b7049a-1441-4d3a-81b2-69a689bbf154/ENCFF832YNR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 ENCSR369YUK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR369YUK Signal\ track wgEncodeReg4TfChip_ENCFF832YNR\ type bigWig\ visibility full\ OsteoblastDonor1_CNhs11078_ctss_rev OsteoblastD1- bigWig Osteoblast, donor1_CNhs11078_11277-116H8_reverse 0 2686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor1_CNhs11078_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ OsteoblastDonor1_CNhs11078_tpm_rev OsteoblastD1- bigWig Osteoblast, donor1_CNhs11078_11277-116H8_reverse 1 2686 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor1.CNhs11078.11277-116H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor1_CNhs11078_11277-116H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11277-116H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor1_CNhs11078_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11277-116H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF683HKV ENCSR355GNZ Peak bigBed 5 Coronary artery tissue female adult 51 years H3K27ac peak 4 2687 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/ef48429c-5fe3-4efb-a87b-c82002e858c8/ENCFF683HKV.bigBed\ color 181,145,0\ longLabel Coronary artery tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355GNZ Peak\ track wgEncodeReg4Epigenetics_ENCFF683HKV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF706EWX ENCSR370NFS Peak bigBed 5 K562 ZNF280A peaks 4 2687 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/e982d606-3400-49f5-8002-77fa8be4c40b/ENCFF706EWX.bigBed\ labelFields none\ longLabel K562 ZNF280A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR370NFS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF706EWX\ type bigBed 5\ useScore 1\ visibility squish\ OsteoblastDonor2_CNhs11385_ctss_fwd OsteoblastD2+ bigWig Osteoblast, donor2_CNhs11385_11354-117H4_forward 0 2687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor2_CNhs11385_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_tpm_fwd OsteoblastD2+ bigWig Osteoblast, donor2_CNhs11385_11354-117H4_forward 1 2687 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor2_CNhs11385_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF476MBG ENCSR355GNZ Signal bigWig Coronary artery tissue female adult 51 years H3K27ac signal 2 2688 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/d94f31fb-66b7-44f0-a506-b556b05cf08b/ENCFF476MBG.bigWig\ color 181,145,0\ longLabel Coronary artery tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355GNZ Signal\ track wgEncodeReg4Epigenetics_ENCFF476MBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF242FVI ENCSR370NFS Signal bigWig K562 ZNF280A ENCSR370NFS signal 2 2688 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/2bfb1270-b4fa-4abc-be29-121cdaed9e5a/ENCFF242FVI.bigWig\ color 254,75,173\ longLabel K562 ZNF280A ENCSR370NFS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR370NFS Signal\ track wgEncodeReg4TfChip_ENCFF242FVI\ type bigWig\ visibility full\ OsteoblastDonor2_CNhs11385_ctss_rev OsteoblastD2- bigWig Osteoblast, donor2_CNhs11385_11354-117H4_reverse 0 2688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor2_CNhs11385_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ OsteoblastDonor2_CNhs11385_tpm_rev OsteoblastD2- bigWig Osteoblast, donor2_CNhs11385_11354-117H4_reverse 1 2688 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor2.CNhs11385.11354-117H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor2_CNhs11385_11354-117H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11354-117H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor2_CNhs11385_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11354-117H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF505HGD ENCSR355PMV Peak bigBed 5 Heart left ventricle tissue male adult 40 years CTCF peak 4 2689 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7dbf30a5-3986-4b45-a01f-abbe37e5d2da/ENCFF505HGD.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart left ventricle tissue male adult 40 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355PMV Peak\ track wgEncodeReg4Epigenetics_ENCFF505HGD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF542UDC ENCSR372GIN Peak bigBed 5 GM12878 CBX5 peaks 4 2689 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9b89edd2-b0f1-413b-b1b0-eed568ce98ba/ENCFF542UDC.bigBed\ labelFields none\ longLabel GM12878 CBX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR372GIN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF542UDC\ type bigBed 5\ useScore 1\ visibility squish\ OsteoblastDonor3_CNhs12036_ctss_fwd OsteoblastD3+ bigWig Osteoblast, donor3_CNhs12036_11426-118G4_forward 0 2689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor3_CNhs12036_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_tpm_fwd OsteoblastD3+ bigWig Osteoblast, donor3_CNhs12036_11426-118G4_forward 1 2689 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDonor3_CNhs12036_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF843XSG ENCSR355PMV Signal bigWig Heart left ventricle tissue male adult 40 years CTCF signal 2 2690 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/660a43da-02a4-4ebc-8ab0-6ad4fadc305c/ENCFF843XSG.bigWig\ color 0,176,240\ longLabel Heart left ventricle tissue male adult 40 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355PMV Signal\ track wgEncodeReg4Epigenetics_ENCFF843XSG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF771TRB ENCSR372GIN Signal bigWig GM12878 CBX5 ENCSR372GIN signal 2 2690 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c7858358-8997-48d8-8745-e7ae3669aa77/ENCFF771TRB.bigWig\ color 254,75,173\ longLabel GM12878 CBX5 ENCSR372GIN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR372GIN Signal\ track wgEncodeReg4TfChip_ENCFF771TRB\ type bigWig\ visibility full\ OsteoblastDonor3_CNhs12036_ctss_rev OsteoblastD3- bigWig Osteoblast, donor3_CNhs12036_11426-118G4_reverse 0 2690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor3_CNhs12036_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ OsteoblastDonor3_CNhs12036_tpm_rev OsteoblastD3- bigWig Osteoblast, donor3_CNhs12036_11426-118G4_reverse 1 2690 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%2c%20donor3.CNhs12036.11426-118G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast, donor3_CNhs12036_11426-118G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11426-118G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDonor3_CNhs12036_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11426-118G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF931NSL ENCSR355PNF Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 2691 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/02dbf871-043f-4459-9ee3-0b223b3233f5/ENCFF931NSL.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355PNF Signal\ track wgEncodeReg4Epigenetics_ENCFF931NSL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF245PVD ENCSR372JWF Peak bigBed 5 Middle frontal area 46 tissue male adult (71 years) CTCF peaks 4 2691 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/89d07e78-acb4-4361-af84-6eec6da26010/ENCFF245PVD.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue male adult (71 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR372JWF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF245PVD\ type bigBed 5\ useScore 1\ visibility squish\ OsteoblastDifferentiatedDonor1_CNhs11311_ctss_fwd OsteoblastDifferentiatedD1+ bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward 0 2691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor1_CNhs11311_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_tpm_fwd OsteoblastDifferentiatedD1+ bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward 1 2691 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor1_CNhs11311_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF592INT ENCSR355SGJ Peak bigBed 5 Sigmoid colon tissue female adult 51 years ATAC peak 4 2692 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/492f72a3-f3a8-43b1-83c2-ff2277481ab2/ENCFF592INT.bigBed\ color 2,199,185\ longLabel Sigmoid colon tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355SGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF592INT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF816YAI ENCSR372JWF Signal bigWig Middle frontal area 46 tissue male adult (71 years) CTCF ENCSR372JWF signal 2 2692 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/794c8f1b-713c-43df-8013-950b4c99fd91/ENCFF816YAI.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue male adult (71 years) CTCF ENCSR372JWF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR372JWF Signal\ track wgEncodeReg4TfChip_ENCFF816YAI\ type bigWig\ visibility full\ OsteoblastDifferentiatedDonor1_CNhs11311_ctss_rev OsteoblastDifferentiatedD1- bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse 0 2692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor1_CNhs11311_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor1_CNhs11311_tpm_rev OsteoblastDifferentiatedD1- bigWig Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse 1 2692 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor1.CNhs11311.11276-116H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor1_CNhs11311_11276-116H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11276-116H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor1_CNhs11311_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11276-116H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF961XDO ENCSR355SGJ Signal bigWig Sigmoid colon tissue female adult 51 years ATAC signal 2 2693 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/62a25cfa-afb1-4160-a1dd-cd4a4b7c9624/ENCFF961XDO.bigWig\ color 2,199,185\ longLabel Sigmoid colon tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355SGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF961XDO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF579NKA ENCSR372JXR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511 ZNF511 peaks 4 2693 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/83d7a345-556c-4b06-add4-7239910d3e41/ENCFF579NKA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511 ZNF511 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR372JXR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF579NKA\ type bigBed 5\ useScore 1\ visibility squish\ OsteoblastDifferentiatedDonor2_CNhs11980_ctss_fwd OsteoblastDifferentiatedD2+ bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward 0 2693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor2_CNhs11980_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_tpm_fwd OsteoblastDifferentiatedD2+ bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward 1 2693 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor2_CNhs11980_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF697ULR ENCSR355UYP Peak bigBed 5 Cingulate gyrus tissue male adult 81 years H3K27ac peak 4 2694 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/cd12f728-0ffa-4e66-bc74-d0f423931134/ENCFF697ULR.bigBed\ color 181,145,0\ longLabel Cingulate gyrus tissue male adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355UYP Peak\ track wgEncodeReg4Epigenetics_ENCFF697ULR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF869RJH ENCSR372JXR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511 ZNF511 ENCSR372JXR signal 2 2694 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/59af6b1f-5b85-42c6-aac9-18ae883f264e/ENCFF869RJH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF511 ZNF511 ENCSR372JXR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR372JXR Signal\ track wgEncodeReg4TfChip_ENCFF869RJH\ type bigWig\ visibility full\ OsteoblastDifferentiatedDonor2_CNhs11980_ctss_rev OsteoblastDifferentiatedD2- bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse 0 2694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor2_CNhs11980_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor2_CNhs11980_tpm_rev OsteoblastDifferentiatedD2- bigWig Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse 1 2694 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor2.CNhs11980.11353-117H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor2_CNhs11980_11353-117H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11353-117H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor2_CNhs11980_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11353-117H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF692LNN ENCSR355UYP Signal bigWig Cingulate gyrus tissue male adult 81 years H3K27ac signal 2 2695 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/212ba5e7-6515-41cc-9201-36fb5aa969c9/ENCFF692LNN.bigWig\ color 181,145,0\ longLabel Cingulate gyrus tissue male adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355UYP Signal\ track wgEncodeReg4Epigenetics_ENCFF692LNN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF468QTQ ENCSR374MAS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PITX1 PITX1 peaks 4 2695 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/783adfb4-4943-442f-a82e-771a6026adae/ENCFF468QTQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PITX1 PITX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR374MAS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF468QTQ\ type bigBed 5\ useScore 1\ visibility squish\ OsteoblastDifferentiatedDonor3_CNhs12035_ctss_fwd OsteoblastDifferentiatedD3+ bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward 0 2695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor3_CNhs12035_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_tpm_fwd OsteoblastDifferentiatedD3+ bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward 1 2695 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track OsteoblastDifferentiatedDonor3_CNhs12035_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF205NIQ ENCSR355WAJ Peak bigBed 5 Left ventricle myocardium superior tissue male adult 60 years DNase peak 4 2696 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/8efbe70e-a83a-43fd-954d-7d1754f42690/ENCFF205NIQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Left ventricle myocardium superior tissue male adult 60 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355WAJ Peak\ track wgEncodeReg4Epigenetics_ENCFF205NIQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF379YZX ENCSR374MAS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PITX1 PITX1 ENCSR374MAS signal 2 2696 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/83377ab3-850c-42c1-98aa-18a739787cde/ENCFF379YZX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PITX1 PITX1 ENCSR374MAS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR374MAS Signal\ track wgEncodeReg4TfChip_ENCFF379YZX\ type bigWig\ visibility full\ OsteoblastDifferentiatedDonor3_CNhs12035_ctss_rev OsteoblastDifferentiatedD3- bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse 0 2696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OsteoblastDifferentiatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor3_CNhs12035_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ OsteoblastDifferentiatedDonor3_CNhs12035_tpm_rev OsteoblastDifferentiatedD3- bigWig Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse 1 2696 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Osteoblast%20-%20differentiated%2c%20donor3.CNhs12035.11425-118G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Osteoblast - differentiated, donor3_CNhs12035_11425-118G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11425-118G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OsteoblastDifferentiatedD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track OsteoblastDifferentiatedDonor3_CNhs12035_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11425-118G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF909PMD ENCSR355WAJ Signal bigWig Left ventricle myocardium superior tissue male adult 60 years DNase signal 2 2697 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/5b1d9557-fc42-48fd-8119-8a54356630c3/ENCFF909PMD.bigWig\ color 6,218,147\ longLabel Left ventricle myocardium superior tissue male adult 60 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR355WAJ Signal\ track wgEncodeReg4Epigenetics_ENCFF909PMD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF046GNG ENCSR374PKX Peak bigBed 5 Middle frontal area 46 tissue male adult (83 years) CTCF peaks 4 2697 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/317dac77-8d1e-4276-b3b7-bc0c577889b5/ENCFF046GNG.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue male adult (83 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR374PKX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF046GNG\ type bigBed 5\ useScore 1\ visibility squish\ PancreaticStromalCellsDonor1_CNhs10877_ctss_fwd PancreaticStromalCellsD1+ bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward 0 2697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreaticStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PancreaticStromalCellsDonor1_CNhs10877_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_tpm_fwd PancreaticStromalCellsD1+ bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward 1 2697 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreaticStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PancreaticStromalCellsDonor1_CNhs10877_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF055NDP ENCSR356EWB Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 2698 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/958c405c-55d4-483f-9fa7-5542863ec0fa/ENCFF055NDP.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR356EWB Peak\ track wgEncodeReg4Epigenetics_ENCFF055NDP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF280OBE ENCSR374PKX Signal bigWig Middle frontal area 46 tissue male adult (83 years) CTCF ENCSR374PKX signal 2 2698 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/ea859882-9b71-4de7-9b88-684af1ec2552/ENCFF280OBE.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue male adult (83 years) CTCF ENCSR374PKX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR374PKX Signal\ track wgEncodeReg4TfChip_ENCFF280OBE\ type bigWig\ visibility full\ PancreaticStromalCellsDonor1_CNhs10877_ctss_rev PancreaticStromalCellsD1- bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse 0 2698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreaticStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PancreaticStromalCellsDonor1_CNhs10877_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ PancreaticStromalCellsDonor1_CNhs10877_tpm_rev PancreaticStromalCellsD1- bigWig Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse 1 2698 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pancreatic%20stromal%20cells%2c%20donor1.CNhs10877.11249-116E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Pancreatic stromal cells, donor1_CNhs10877_11249-116E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11249-116E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreaticStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PancreaticStromalCellsDonor1_CNhs10877_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11249-116E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF917XEI ENCSR356EWB Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal 2 2699 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/f2615953-c6b2-4d65-935c-2c444551bd13/ENCFF917XEI.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR356EWB Signal\ track wgEncodeReg4Epigenetics_ENCFF917XEI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF746TCR ENCSR375VXU Peak bigBed 5 Peyer's patch tissue female adult (53 years) CTCF peaks 4 2699 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/7303b6d5-ac6d-45ad-a95b-5eae5fa1dae3/ENCFF746TCR.bigBed\ labelFields none\ longLabel Peyer's patch tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR375VXU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF746TCR\ type bigBed 5\ useScore 1\ visibility squish\ PericytesDonor1_CNhs11317_ctss_fwd PericytesD1+ bigWig Pericytes, donor1_CNhs11317_11491-119E6_forward 0 2699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor1_CNhs11317_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ PericytesDonor1_CNhs11317_tpm_fwd PericytesD1+ bigWig Pericytes, donor1_CNhs11317_11491-119E6_forward 1 2699 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor1_CNhs11317_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF604VRO ENCSR356QCD Peak bigBed 5 Muscle of arm tissue male embryo 101 days DNase peak 4 2700 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/14b0409e-2097-4b43-9f39-5a506da21f04/ENCFF604VRO.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue male embryo 101 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR356QCD Peak\ track wgEncodeReg4Epigenetics_ENCFF604VRO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF945PHV ENCSR375VXU Signal bigWig Peyer's patch tissue female adult (53 years) CTCF ENCSR375VXU signal 2 2700 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/0ee23308-5e1b-40d0-893f-3940e3cb73ba/ENCFF945PHV.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (53 years) CTCF ENCSR375VXU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR375VXU Signal\ track wgEncodeReg4TfChip_ENCFF945PHV\ type bigWig\ visibility full\ PericytesDonor1_CNhs11317_ctss_rev PericytesD1- bigWig Pericytes, donor1_CNhs11317_11491-119E6_reverse 0 2700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor1_CNhs11317_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ PericytesDonor1_CNhs11317_tpm_rev PericytesD1- bigWig Pericytes, donor1_CNhs11317_11491-119E6_reverse 1 2700 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor1.CNhs11317.11491-119E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Pericytes, donor1_CNhs11317_11491-119E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11491-119E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor1_CNhs11317_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11491-119E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF677VFH ENCSR356QCD Signal bigWig Muscle of arm tissue male embryo 101 days DNase signal 2 2701 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e3c5b529-fc8e-4e9c-8167-5d253c119d22/ENCFF677VFH.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue male embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR356QCD Signal\ track wgEncodeReg4Epigenetics_ENCFF677VFH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF725NNJ ENCSR376EOW Peak bigBed 5 Heart right ventricle tissue male adult (66 years) CTCF peaks 4 2701 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/12f6a44f-5f94-40dd-b465-eb484671161d/ENCFF725NNJ.bigBed\ labelFields none\ longLabel Heart right ventricle tissue male adult (66 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376EOW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF725NNJ\ type bigBed 5\ useScore 1\ visibility squish\ PericytesDonor2_CNhs12079_ctss_fwd PericytesD2+ bigWig Pericytes, donor2_CNhs12079_11571-120E5_forward 0 2701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor2_CNhs12079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ PericytesDonor2_CNhs12079_tpm_fwd PericytesD2+ bigWig Pericytes, donor2_CNhs12079_11571-120E5_forward 1 2701 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor2_CNhs12079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF717JNO ENCSR356RNZ Peak bigBed 5 Heart right ventricle tissue female adult 46 years DNase peak 4 2702 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/feb4d110-6c04-44b8-920b-ceee92249656/ENCFF717JNO.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue female adult 46 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR356RNZ Peak\ track wgEncodeReg4Epigenetics_ENCFF717JNO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF430LIA ENCSR376EOW Signal bigWig Heart right ventricle tissue male adult (66 years) CTCF ENCSR376EOW signal 2 2702 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/fef9e9e8-f312-4d17-82b6-984f0cd07710/ENCFF430LIA.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (66 years) CTCF ENCSR376EOW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376EOW Signal\ track wgEncodeReg4TfChip_ENCFF430LIA\ type bigWig\ visibility full\ PericytesDonor2_CNhs12079_ctss_rev PericytesD2- bigWig Pericytes, donor2_CNhs12079_11571-120E5_reverse 0 2702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor2_CNhs12079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ PericytesDonor2_CNhs12079_tpm_rev PericytesD2- bigWig Pericytes, donor2_CNhs12079_11571-120E5_reverse 1 2702 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor2.CNhs12079.11571-120E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Pericytes, donor2_CNhs12079_11571-120E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11571-120E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor2_CNhs12079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11571-120E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF270GCR ENCSR356RNZ Signal bigWig Heart right ventricle tissue female adult 46 years DNase signal 2 2703 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/7cac6b20-ac3e-4177-8bac-331a23d7134d/ENCFF270GCR.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue female adult 46 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR356RNZ Signal\ track wgEncodeReg4Epigenetics_ENCFF270GCR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF004KYI ENCSR376FMN Peak bigBed 5 HepG2 EHMT2 peaks 4 2703 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/6c99cb66-233b-41a5-a7ff-9edb0b90702c/ENCFF004KYI.bigBed\ labelFields none\ longLabel HepG2 EHMT2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376FMN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF004KYI\ type bigBed 5\ useScore 1\ visibility squish\ PericytesDonor3_CNhs12116_ctss_fwd PericytesD3+ bigWig Pericytes, donor3_CNhs12116_11652-122E5_forward 0 2703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor3.CNhs12116.11652-122E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor3_CNhs12116_11652-122E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11652-122E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor3_CNhs12116_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5\ urlLabel FANTOM5 Details:\ PericytesDonor3_CNhs12116_tpm_fwd PericytesD3+ bigWig Pericytes, donor3_CNhs12116_11652-122E5_forward 1 2703 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor3.CNhs12116.11652-122E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Pericytes, donor3_CNhs12116_11652-122E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11652-122E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PericytesDonor3_CNhs12116_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF865PJD ENCSR357AWH Peak bigBed 5 Upper lobe of right lung tissue male adult 60 years DNase peak 4 2704 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/7114d27b-cb6e-406c-a355-7914039cdc0c/ENCFF865PJD.bigBed\ color 6,218,147\ labelFields none\ longLabel Upper lobe of right lung tissue male adult 60 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357AWH Peak\ track wgEncodeReg4Epigenetics_ENCFF865PJD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF388YHU ENCSR376FMN Signal bigWig HepG2 EHMT2 ENCSR376FMN signal 2 2704 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/9ad32801-cd1b-47ee-80d4-f22c771a83c3/ENCFF388YHU.bigWig\ color 137,152,82\ longLabel HepG2 EHMT2 ENCSR376FMN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376FMN Signal\ track wgEncodeReg4TfChip_ENCFF388YHU\ type bigWig\ visibility full\ PericytesDonor3_CNhs12116_ctss_rev PericytesD3- bigWig Pericytes, donor3_CNhs12116_11652-122E5_reverse 0 2704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor3.CNhs12116.11652-122E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Pericytes, donor3_CNhs12116_11652-122E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11652-122E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PericytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor3_CNhs12116_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5\ urlLabel FANTOM5 Details:\ PericytesDonor3_CNhs12116_tpm_rev PericytesD3- bigWig Pericytes, donor3_CNhs12116_11652-122E5_reverse 1 2704 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Pericytes%2c%20donor3.CNhs12116.11652-122E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Pericytes, donor3_CNhs12116_11652-122E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11652-122E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PericytesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PericytesDonor3_CNhs12116_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11652-122E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF807ZJE ENCSR357AWH Signal bigWig Upper lobe of right lung tissue male adult 60 years DNase signal 2 2705 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/c16a07b0-7299-4395-b9cf-0bc8774549c7/ENCFF807ZJE.bigWig\ color 6,218,147\ longLabel Upper lobe of right lung tissue male adult 60 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357AWH Signal\ track wgEncodeReg4Epigenetics_ENCFF807ZJE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF679VBB ENCSR376RCX Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 peaks 4 2705 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/53777ff8-4aba-4c01-928f-58fd06bc6702/ENCFF679VBB.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376RCX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF679VBB\ type bigBed 5\ useScore 1\ visibility squish\ PerineurialCellsDonor1_CNhs12587_ctss_fwd PerineurialCellsD1+ bigWig Perineurial Cells, donor1_CNhs12587_11499-119F5_forward 0 2705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor1.CNhs12587.11499-119F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Perineurial Cells, donor1_CNhs12587_11499-119F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11499-119F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PerineurialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PerineurialCellsDonor1_CNhs12587_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5\ urlLabel FANTOM5 Details:\ PerineurialCellsDonor1_CNhs12587_tpm_fwd PerineurialCellsD1+ bigWig Perineurial Cells, donor1_CNhs12587_11499-119F5_forward 1 2705 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor1.CNhs12587.11499-119F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Perineurial Cells, donor1_CNhs12587_11499-119F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11499-119F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PerineurialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PerineurialCellsDonor1_CNhs12587_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF936LTX ENCSR357PMV Peak bigBed 5 Muscle of arm tissue female embryo 120 days DNase peak 4 2706 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/b2e768c1-0012-41fb-bb52-fcc6d85f970a/ENCFF936LTX.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue female embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357PMV Peak\ track wgEncodeReg4Epigenetics_ENCFF936LTX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF094FEC ENCSR376RCX Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 ENCSR376RCX signal 2 2706 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/3ae4c939-394c-4c09-acf1-6c1b876ab418/ENCFF094FEC.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 ENCSR376RCX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376RCX Signal\ track wgEncodeReg4TfChip_ENCFF094FEC\ type bigWig\ visibility full\ PerineurialCellsDonor1_CNhs12587_ctss_rev PerineurialCellsD1- bigWig Perineurial Cells, donor1_CNhs12587_11499-119F5_reverse 0 2706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor1.CNhs12587.11499-119F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Perineurial Cells, donor1_CNhs12587_11499-119F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11499-119F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PerineurialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PerineurialCellsDonor1_CNhs12587_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5\ urlLabel FANTOM5 Details:\ PerineurialCellsDonor1_CNhs12587_tpm_rev PerineurialCellsD1- bigWig Perineurial Cells, donor1_CNhs12587_11499-119F5_reverse 1 2706 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor1.CNhs12587.11499-119F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Perineurial Cells, donor1_CNhs12587_11499-119F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11499-119F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PerineurialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PerineurialCellsDonor1_CNhs12587_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11499-119F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF346VKE ENCSR357PMV Signal bigWig Muscle of arm tissue female embryo 120 days DNase signal 2 2707 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c6d2b63b-ef61-45ea-b613-05762500aece/ENCFF346VKE.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue female embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357PMV Signal\ track wgEncodeReg4Epigenetics_ENCFF346VKE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF365MNT ENCSR376UMR Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF84 ZNF84 peaks 4 2707 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/25373f0a-b2f2-4f7e-9ad0-2e96be273ea9/ENCFF365MNT.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF84 ZNF84 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376UMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF365MNT\ type bigBed 5\ useScore 1\ visibility squish\ PerineurialCellsDonor2_CNhs12590_ctss_fwd PerineurialCellsD2+ bigWig Perineurial Cells, donor2_CNhs12590_11579-120F4_forward 0 2707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor2.CNhs12590.11579-120F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Perineurial Cells, donor2_CNhs12590_11579-120F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11579-120F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PerineurialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PerineurialCellsDonor2_CNhs12590_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4\ urlLabel FANTOM5 Details:\ PerineurialCellsDonor2_CNhs12590_tpm_fwd PerineurialCellsD2+ bigWig Perineurial Cells, donor2_CNhs12590_11579-120F4_forward 1 2707 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor2.CNhs12590.11579-120F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Perineurial Cells, donor2_CNhs12590_11579-120F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11579-120F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PerineurialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PerineurialCellsDonor2_CNhs12590_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF691GSF ENCSR357RED Peak bigBed 5 Muscle of back tissue male embryo 105 days DNase peak 4 2708 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/65d4f007-61e7-41e4-bca1-a6d948e5a9e0/ENCFF691GSF.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357RED Peak\ track wgEncodeReg4Epigenetics_ENCFF691GSF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF018GMI ENCSR376UMR Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF84 ZNF84 ENCSR376UMR signal 2 2708 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/6117a951-ee43-491d-a394-6c091b167159/ENCFF018GMI.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF84 ZNF84 ENCSR376UMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376UMR Signal\ track wgEncodeReg4TfChip_ENCFF018GMI\ type bigWig\ visibility full\ PerineurialCellsDonor2_CNhs12590_ctss_rev PerineurialCellsD2- bigWig Perineurial Cells, donor2_CNhs12590_11579-120F4_reverse 0 2708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor2.CNhs12590.11579-120F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Perineurial Cells, donor2_CNhs12590_11579-120F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11579-120F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PerineurialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PerineurialCellsDonor2_CNhs12590_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4\ urlLabel FANTOM5 Details:\ PerineurialCellsDonor2_CNhs12590_tpm_rev PerineurialCellsD2- bigWig Perineurial Cells, donor2_CNhs12590_11579-120F4_reverse 1 2708 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Perineurial%20Cells%2c%20donor2.CNhs12590.11579-120F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Perineurial Cells, donor2_CNhs12590_11579-120F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11579-120F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PerineurialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PerineurialCellsDonor2_CNhs12590_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11579-120F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF839XJQ ENCSR357RED Signal bigWig Muscle of back tissue male embryo 105 days DNase signal 2 2709 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/d4c717a1-5e97-4151-9b60-a1ef81119fc6/ENCFF839XJQ.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357RED Signal\ track wgEncodeReg4Epigenetics_ENCFF839XJQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF248LJZ ENCSR376WCJ Peak bigBed 5 K562 IRF2 peaks 4 2709 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/74d04594-f59d-42eb-bb8b-1ea5e0111898/ENCFF248LJZ.bigBed\ labelFields none\ longLabel K562 IRF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376WCJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF248LJZ\ type bigBed 5\ useScore 1\ visibility squish\ PeripheralBloodMononuclearCellsDonor1_CNhs10860_ctss_fwd PeripheralBloodMononuclearCellsD1+ bigWig Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_forward 0 2709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor1.CNhs10860.11231-116C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11231-116C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor1_CNhs10860_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor1_CNhs10860_tpm_fwd PeripheralBloodMononuclearCellsD1+ bigWig Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_forward 1 2709 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor1.CNhs10860.11231-116C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11231-116C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor1_CNhs10860_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF091WME ENCSR357WQH Peak bigBed 5 GM18508 ATAC peak 4 2710 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/ea1e5dd5-4f05-4dbc-90e3-46d65e25048c/ENCFF091WME.bigBed\ color 2,199,185\ longLabel GM18508 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357WQH Peak\ track wgEncodeReg4Epigenetics_ENCFF091WME\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF102RGH ENCSR376WCJ Signal bigWig K562 IRF2 ENCSR376WCJ signal 2 2710 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/30df07e2-2ce2-4d3a-b7bc-48f441c0660e/ENCFF102RGH.bigWig\ color 254,75,173\ longLabel K562 IRF2 ENCSR376WCJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376WCJ Signal\ track wgEncodeReg4TfChip_ENCFF102RGH\ type bigWig\ visibility full\ PeripheralBloodMononuclearCellsDonor1_CNhs10860_ctss_rev PeripheralBloodMononuclearCellsD1- bigWig Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_reverse 0 2710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor1.CNhs10860.11231-116C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11231-116C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor1_CNhs10860_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor1_CNhs10860_tpm_rev PeripheralBloodMononuclearCellsD1- bigWig Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_reverse 1 2710 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor1.CNhs10860.11231-116C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor1_CNhs10860_11231-116C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11231-116C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor1_CNhs10860_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11231-116C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF879GGI ENCSR357WQH Signal bigWig GM18508 ATAC signal 2 2711 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/e0cd9e71-5b55-440c-a48a-ae78a5ff6802/ENCFF879GGI.bigWig\ color 2,199,185\ longLabel GM18508 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR357WQH Signal\ track wgEncodeReg4Epigenetics_ENCFF879GGI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF885DQE ENCSR376XAV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 SMAD3 peaks 4 2711 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/102537e8-07d8-49a8-8046-3786b35a325f/ENCFF885DQE.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 SMAD3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376XAV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF885DQE\ type bigBed 5\ useScore 1\ visibility squish\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_fwd PeripheralBloodMononuclearCellsD2+ bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward 0 2711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_fwd PeripheralBloodMononuclearCellsD2+ bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward 1 2711 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF035KTO ENCSR358NBC Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 2712 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/992fc22a-c43c-4276-81f7-a38a516288f7/ENCFF035KTO.bigBed\ color 255,0,0\ longLabel Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR358NBC Peak\ track wgEncodeReg4Epigenetics_ENCFF035KTO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF295IHA ENCSR376XAV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 SMAD3 ENCSR376XAV signal 2 2712 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/5c39cbc4-6021-4d03-9adb-daebc4e5265e/ENCFF295IHA.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 SMAD3 ENCSR376XAV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR376XAV Signal\ track wgEncodeReg4TfChip_ENCFF295IHA\ type bigWig\ visibility full\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_rev PeripheralBloodMononuclearCellsD2- bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse 0 2712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_rev PeripheralBloodMononuclearCellsD2- bigWig Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse 1 2712 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor2.CNhs11958.11312-117C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor2_CNhs11958_11312-117C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11312-117C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor2_CNhs11958_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11312-117C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF556AWF ENCSR358NBC Signal bigWig Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 2713 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/5f2f00ac-7f81-431c-894e-ab8dd00ab4dd/ENCFF556AWF.bigWig\ color 255,0,0\ longLabel Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR358NBC Signal\ track wgEncodeReg4Epigenetics_ENCFF556AWF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF940JZP ENCSR377BLZ Peak bigBed 5 K562 GTF2F1 peaks 4 2713 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/56cd7a11-ef01-477f-9dc9-1ff6f1317fb6/ENCFF940JZP.bigBed\ labelFields none\ longLabel K562 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR377BLZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF940JZP\ type bigBed 5\ useScore 1\ visibility squish\ PeripheralBloodMononuclearCellsDonor3_CNhs12002_ctss_fwd PeripheralBloodMononuclearCellsD3+ bigWig Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_forward 0 2713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor3.CNhs12002.11388-118C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11388-118C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor3_CNhs12002_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor3_CNhs12002_tpm_fwd PeripheralBloodMononuclearCellsD3+ bigWig Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_forward 1 2713 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor3.CNhs12002.11388-118C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11388-118C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PeripheralBloodMononuclearCellsDonor3_CNhs12002_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF265MYB ENCSR358RVW Peak bigBed 5 Heart tissue male embryo 91 days H3K4me3 peak 4 2714 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/13/0a47afbd-161b-41ab-9954-9c110d4f435b/ENCFF265MYB.bigBed\ color 255,0,0\ longLabel Heart tissue male embryo 91 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR358RVW Peak\ track wgEncodeReg4Epigenetics_ENCFF265MYB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF436CSN ENCSR377BLZ Signal bigWig K562 GTF2F1 ENCSR377BLZ signal 2 2714 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/cde145c2-a659-4044-ba68-f996b41cbaa6/ENCFF436CSN.bigWig\ color 254,75,173\ longLabel K562 GTF2F1 ENCSR377BLZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR377BLZ Signal\ track wgEncodeReg4TfChip_ENCFF436CSN\ type bigWig\ visibility full\ PeripheralBloodMononuclearCellsDonor3_CNhs12002_ctss_rev PeripheralBloodMononuclearCellsD3- bigWig Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse 0 2714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor3.CNhs12002.11388-118C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11388-118C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PeripheralBloodMononuclearCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor3_CNhs12002_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2\ urlLabel FANTOM5 Details:\ PeripheralBloodMononuclearCellsDonor3_CNhs12002_tpm_rev PeripheralBloodMononuclearCellsD3- bigWig Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse 1 2714 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Peripheral%20Blood%20Mononuclear%20Cells%2c%20donor3.CNhs12002.11388-118C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Peripheral Blood Mononuclear Cells, donor3_CNhs12002_11388-118C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11388-118C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PeripheralBloodMononuclearCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PeripheralBloodMononuclearCellsDonor3_CNhs12002_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11388-118C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF513OZY ENCSR358RVW Signal bigWig Heart tissue male embryo 91 days H3K4me3 signal 2 2715 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/13/147f8cdb-1fb8-4188-b101-4f31c0fc976a/ENCFF513OZY.bigWig\ color 255,0,0\ longLabel Heart tissue male embryo 91 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR358RVW Signal\ track wgEncodeReg4Epigenetics_ENCFF513OZY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF696ASB ENCSR378BVM Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF peaks 4 2715 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/3b937a90-e3ec-42e0-bc24-d945bfdcbb41/ENCFF696ASB.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR378BVM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF696ASB\ type bigBed 5\ useScore 1\ visibility squish\ PlacentalEpithelialCellsDonor1_CNhs11079_ctss_fwd PlacentalEpithelialCellsD1+ bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward 0 2715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor1_CNhs11079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_tpm_fwd PlacentalEpithelialCellsD1+ bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward 1 2715 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor1_CNhs11079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF480BAH ENCSR359HFH Peak bigBed 5 HG03095 ATAC peak 4 2716 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8c63c150-7cba-49c7-8658-0e1db1a25ba6/ENCFF480BAH.bigBed\ color 2,199,185\ longLabel HG03095 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR359HFH Peak\ track wgEncodeReg4Epigenetics_ENCFF480BAH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF888DOQ ENCSR378BVM Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF ENCSR378BVM signal 2 2716 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/ff11ec67-dccb-44fd-912e-e6ffbe3e87d9/ENCFF888DOQ.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (87 years) CTCF ENCSR378BVM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR378BVM Signal\ track wgEncodeReg4TfChip_ENCFF888DOQ\ type bigWig\ visibility full\ PlacentalEpithelialCellsDonor1_CNhs11079_ctss_rev PlacentalEpithelialCellsD1- bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse 0 2716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor1_CNhs11079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor1_CNhs11079_tpm_rev PlacentalEpithelialCellsD1- bigWig Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse 1 2716 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor1.CNhs11079.11278-116H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor1_CNhs11079_11278-116H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11278-116H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor1_CNhs11079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11278-116H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF966MMP ENCSR359HFH Signal bigWig HG03095 ATAC signal 2 2717 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/3fa2112b-8640-495b-bd99-8f10664e3f4b/ENCFF966MMP.bigWig\ color 2,199,185\ longLabel HG03095 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR359HFH Signal\ track wgEncodeReg4Epigenetics_ENCFF966MMP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF041CKA ENCSR378KET Peak bigBed 5 Middle frontal area 46 tissue male adult (83 years) CTCF peaks 4 2717 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/1cd8d45b-3e54-432e-be30-19cda02e6569/ENCFF041CKA.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue male adult (83 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR378KET Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF041CKA\ type bigBed 5\ useScore 1\ visibility squish\ PlacentalEpithelialCellsDonor2_CNhs11386_ctss_fwd PlacentalEpithelialCellsD2+ bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward 0 2717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor2_CNhs11386_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_tpm_fwd PlacentalEpithelialCellsD2+ bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward 1 2717 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor2_CNhs11386_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF487TUI ENCSR359LOD Peak bigBed 5 PC-3 CTCF peak 4 2718 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/93a68bd5-1e90-4400-93ad-27708be5f40a/ENCFF487TUI.bigBed\ color 0,176,240\ labelFields none\ longLabel PC-3 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR359LOD Peak\ track wgEncodeReg4Epigenetics_ENCFF487TUI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF394BNS ENCSR378KET Signal bigWig Middle frontal area 46 tissue male adult (83 years) CTCF ENCSR378KET signal 2 2718 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/db3a2241-ce61-402a-8fcd-e74922497e02/ENCFF394BNS.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue male adult (83 years) CTCF ENCSR378KET signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR378KET Signal\ track wgEncodeReg4TfChip_ENCFF394BNS\ type bigWig\ visibility full\ PlacentalEpithelialCellsDonor2_CNhs11386_ctss_rev PlacentalEpithelialCellsD2- bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse 0 2718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor2_CNhs11386_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor2_CNhs11386_tpm_rev PlacentalEpithelialCellsD2- bigWig Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse 1 2718 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor2.CNhs11386.11355-117H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor2_CNhs11386_11355-117H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11355-117H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor2_CNhs11386_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11355-117H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF756ESH ENCSR359LOD Signal bigWig PC-3 CTCF signal 2 2719 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/57b1ad73-2dee-4113-816c-cb2cae7ef5de/ENCFF756ESH.bigWig\ color 0,176,240\ longLabel PC-3 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR359LOD Signal\ track wgEncodeReg4Epigenetics_ENCFF756ESH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF319RUN ENCSR380WJL Peak bigBed 5 Colonic mucosa tissue female adult (41 years) CTCF peaks 4 2719 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6b0fe999-7f7c-4d2b-bbef-f9efe9d34ee6/ENCFF319RUN.bigBed\ labelFields none\ longLabel Colonic mucosa tissue female adult (41 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR380WJL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF319RUN\ type bigBed 5\ useScore 1\ visibility squish\ PlacentalEpithelialCellsDonor3_CNhs12037_ctss_fwd PlacentalEpithelialCellsD3+ bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward 0 2719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor3_CNhs12037_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_tpm_fwd PlacentalEpithelialCellsD3+ bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward 1 2719 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PlacentalEpithelialCellsDonor3_CNhs12037_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF428TUM ENCSR360IRQ Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak 4 2720 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/e8af59cf-c037-4992-a66f-420f05aada44/ENCFF428TUM.bigBed\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR360IRQ Peak\ track wgEncodeReg4Epigenetics_ENCFF428TUM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF546ZNQ ENCSR380WJL Signal bigWig Colonic mucosa tissue female adult (41 years) CTCF ENCSR380WJL signal 2 2720 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/f1eab703-67fb-498c-832b-346f36fb71fb/ENCFF546ZNQ.bigWig\ color 86,86,36\ longLabel Colonic mucosa tissue female adult (41 years) CTCF ENCSR380WJL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR380WJL Signal\ track wgEncodeReg4TfChip_ENCFF546ZNQ\ type bigWig\ visibility full\ PlacentalEpithelialCellsDonor3_CNhs12037_ctss_rev PlacentalEpithelialCellsD3- bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse 0 2720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor3_CNhs12037_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ PlacentalEpithelialCellsDonor3_CNhs12037_tpm_rev PlacentalEpithelialCellsD3- bigWig Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse 1 2720 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Placental%20Epithelial%20Cells%2c%20donor3.CNhs12037.11427-118G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Placental Epithelial Cells, donor3_CNhs12037_11427-118G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11427-118G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PlacentalEpithelialCellsDonor3_CNhs12037_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11427-118G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF329UOR ENCSR360IRQ Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal 2 2721 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/f57e602c-97fc-4b4b-91c2-c3d8f5528ab9/ENCFF329UOR.bigWig\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR360IRQ Signal\ track wgEncodeReg4Epigenetics_ENCFF329UOR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF942LFP ENCSR381VYR Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP69B ZFP69B peaks 4 2721 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/559bd8f2-8c11-41c1-b822-ca6b9e675d72/ENCFF942LFP.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP69B ZFP69B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR381VYR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF942LFP\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteBreastDonor1_CNhs11052_ctss_fwd PreadipocyteBreastD1+ bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward 0 2721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor1_CNhs11052_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_tpm_fwd PreadipocyteBreastD1+ bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward 1 2721 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor1_CNhs11052_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF256LWT ENCSR360XIS Peak bigBed 5 Ecto neural progenitor cell originated from H9 DNase peak 4 2722 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/bb5f39e8-a402-4a43-bc4d-8a8585405cf9/ENCFF256LWT.bigBed\ color 6,218,147\ labelFields none\ longLabel Ecto neural progenitor cell originated from H9 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR360XIS Peak\ track wgEncodeReg4Epigenetics_ENCFF256LWT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF391GVN ENCSR381VYR Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP69B ZFP69B ENCSR381VYR signal 2 2722 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/52eaacd4-34ec-4422-a2bc-f7ed6f3bd1da/ENCFF391GVN.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFP69B ZFP69B ENCSR381VYR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR381VYR Signal\ track wgEncodeReg4TfChip_ENCFF391GVN\ type bigWig\ visibility full\ PreadipocyteBreastDonor1_CNhs11052_ctss_rev PreadipocyteBreastD1- bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse 0 2722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor1_CNhs11052_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor1_CNhs11052_tpm_rev PreadipocyteBreastD1- bigWig Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse 1 2722 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor1.CNhs11052.11467-119B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor1_CNhs11052_11467-119B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11467-119B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor1_CNhs11052_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11467-119B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF453BOK ENCSR360XIS Signal bigWig Ecto neural progenitor cell originated from H9 DNase signal 2 2723 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/946795ab-d432-4905-a288-1cebefebdb77/ENCFF453BOK.bigWig\ color 6,218,147\ longLabel Ecto neural progenitor cell originated from H9 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR360XIS Signal\ track wgEncodeReg4Epigenetics_ENCFF453BOK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF373BEC ENCSR382AIB Peak bigBed 5 K562 stably expressing DDX20 DDX20 peaks 4 2723 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/19643baf-d43c-4f7f-9bbb-5ef0554493b4/ENCFF373BEC.bigBed\ labelFields none\ longLabel K562 stably expressing DDX20 DDX20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382AIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF373BEC\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteBreastDonor2_CNhs11971_ctss_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward 0 2723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor2_CNhs11971_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_tpm_fwd PreadipocyteBreastD2+ bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward 1 2723 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteBreastDonor2_CNhs11971_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF396EDI ENCSR360XNZ Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 2724 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/fb206de0-19d8-49a7-b452-4f342b055955/ENCFF396EDI.bigBed\ color 181,145,0\ longLabel Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR360XNZ Peak\ track wgEncodeReg4Epigenetics_ENCFF396EDI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF452QDE ENCSR382AIB Signal bigWig K562 stably expressing DDX20 DDX20 ENCSR382AIB signal 2 2724 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/12127d5f-6b7d-4547-beab-37ddb5450155/ENCFF452QDE.bigWig\ color 254,75,173\ longLabel K562 stably expressing DDX20 DDX20 ENCSR382AIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382AIB Signal\ track wgEncodeReg4TfChip_ENCFF452QDE\ type bigWig\ visibility full\ PreadipocyteBreastDonor2_CNhs11971_ctss_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse 0 2724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor2_CNhs11971_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ PreadipocyteBreastDonor2_CNhs11971_tpm_rev PreadipocyteBreastD2- bigWig Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse 1 2724 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20breast%2c%20donor2.CNhs11971.11328-117E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - breast, donor2_CNhs11971_11328-117E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11328-117E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteBreastD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteBreastDonor2_CNhs11971_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11328-117E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF151LJA ENCSR360XNZ Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 2725 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/5d50190f-7fec-4759-967f-afa6f02d365b/ENCFF151LJA.bigWig\ color 181,145,0\ longLabel Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR360XNZ Signal\ track wgEncodeReg4Epigenetics_ENCFF151LJA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF008ZWC ENCSR382GSF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens INSM2 INSM2 peaks 4 2725 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/8b2a76b0-c169-48e2-9f1a-fc0df9695fc5/ENCFF008ZWC.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens INSM2 INSM2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382GSF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF008ZWC\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteOmentalDonor1_CNhs11065_ctss_fwd PreadipocyteOmentalD1+ bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward 0 2725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor1_CNhs11065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_tpm_fwd PreadipocyteOmentalD1+ bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward 1 2725 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor1_CNhs11065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF226NMW ENCSR361DND Peak bigBed 5 Lower leg skin tissue male adult 37 years DNase peak 4 2726 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/3b1cf023-301c-4878-89e0-edef070c8714/ENCFF226NMW.bigBed\ color 6,218,147\ labelFields none\ longLabel Lower leg skin tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR361DND Peak\ track wgEncodeReg4Epigenetics_ENCFF226NMW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF319PGX ENCSR382GSF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens INSM2 INSM2 ENCSR382GSF signal 2 2726 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/4caa9a94-0343-4912-8cdb-fee8d2fcbafa/ENCFF319PGX.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens INSM2 INSM2 ENCSR382GSF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382GSF Signal\ track wgEncodeReg4TfChip_ENCFF319PGX\ type bigWig\ visibility full\ PreadipocyteOmentalDonor1_CNhs11065_ctss_rev PreadipocyteOmentalD1- bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse 0 2726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor1_CNhs11065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor1_CNhs11065_tpm_rev PreadipocyteOmentalD1- bigWig Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse 1 2726 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor1.CNhs11065.11468-119C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor1_CNhs11065_11468-119C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11468-119C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor1_CNhs11065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11468-119C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF241LIT ENCSR361DND Signal bigWig Lower leg skin tissue male adult 37 years DNase signal 2 2727 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/2d336496-6533-4659-a65c-3ccab74847c1/ENCFF241LIT.bigWig\ color 6,218,147\ longLabel Lower leg skin tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR361DND Signal\ track wgEncodeReg4Epigenetics_ENCFF241LIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF400MBC ENCSR382MOM Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) YY1 peaks 4 2727 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/939ed221-336f-4298-a1de-28570eaa3dd1/ENCFF400MBC.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382MOM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF400MBC\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteOmentalDonor2_CNhs11902_ctss_fwd PreadipocyteOmentalD2+ bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward 0 2727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor2_CNhs11902_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_tpm_fwd PreadipocyteOmentalD2+ bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward 1 2727 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor2_CNhs11902_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF970LMB ENCSR361FWQ Signal bigWig MM.1S H3K4me3 signal 2 2728 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/214bb95c-c053-410a-8cea-ce4e8c366d20/ENCFF970LMB.bigWig\ color 255,0,0\ longLabel MM.1S H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR361FWQ Signal\ track wgEncodeReg4Epigenetics_ENCFF970LMB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF449HXE ENCSR382MOM Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) YY1 ENCSR382MOM signal 2 2728 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/8fc915f5-db8c-41ff-bdab-4f28b3689b4c/ENCFF449HXE.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) YY1 ENCSR382MOM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382MOM Signal\ track wgEncodeReg4TfChip_ENCFF449HXE\ type bigWig\ visibility full\ PreadipocyteOmentalDonor2_CNhs11902_ctss_rev PreadipocyteOmentalD2- bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse 0 2728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor2_CNhs11902_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor2_CNhs11902_tpm_rev PreadipocyteOmentalD2- bigWig Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse 1 2728 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor2.CNhs11902.11329-117E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor2_CNhs11902_11329-117E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11329-117E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor2_CNhs11902_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11329-117E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF767CVC ENCSR361KVZ Peak bigBed 5 Stomach tissue female adult 51 years CTCF peak 4 2729 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/3c529427-8f3f-4099-96c8-7d758857fc97/ENCFF767CVC.bigBed\ color 0,176,240\ labelFields none\ longLabel Stomach tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR361KVZ Peak\ track wgEncodeReg4Epigenetics_ENCFF767CVC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF918PMU ENCSR382PVA Peak bigBed 5 HepG2 GTF2F1 peaks 4 2729 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9b325edf-9584-4650-9723-444820fa7060/ENCFF918PMU.bigBed\ labelFields none\ longLabel HepG2 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382PVA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF918PMU\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteOmentalDonor3_CNhs12013_ctss_fwd PreadipocyteOmentalD3+ bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward 0 2729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor3_CNhs12013_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_tpm_fwd PreadipocyteOmentalD3+ bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward 1 2729 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteOmentalDonor3_CNhs12013_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF919OEF ENCSR361KVZ Signal bigWig Stomach tissue female adult 51 years CTCF signal 2 2730 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/5797e03c-ae21-4706-b653-78f56ae5bc40/ENCFF919OEF.bigWig\ color 0,176,240\ longLabel Stomach tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR361KVZ Signal\ track wgEncodeReg4Epigenetics_ENCFF919OEF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF890BML ENCSR382PVA Signal bigWig HepG2 GTF2F1 ENCSR382PVA signal 2 2730 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/eed33a78-3662-4322-a103-d02e83a4f06b/ENCFF890BML.bigWig\ color 137,152,82\ longLabel HepG2 GTF2F1 ENCSR382PVA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382PVA Signal\ track wgEncodeReg4TfChip_ENCFF890BML\ type bigWig\ visibility full\ PreadipocyteOmentalDonor3_CNhs12013_ctss_rev PreadipocyteOmentalD3- bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse 0 2730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor3_CNhs12013_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ PreadipocyteOmentalDonor3_CNhs12013_tpm_rev PreadipocyteOmentalD3- bigWig Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse 1 2730 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20omental%2c%20donor3.CNhs12013.11403-118D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - omental, donor3_CNhs12013_11403-118D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11403-118D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteOmentalD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteOmentalDonor3_CNhs12013_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11403-118D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF989HPW ENCSR362JSZ Peak bigBed 5 Hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days DNase peak 4 2731 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ecd7deca-da10-4b3f-9770-91856b0c51ca/ENCFF989HPW.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR362JSZ Peak\ track wgEncodeReg4Epigenetics_ENCFF989HPW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF013WSV ENCSR382WLL Peak bigBed 5 MCF-7 ELK1 peaks 4 2731 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/75d3e1da-2c66-4838-9eb2-ead5f068a882/ENCFF013WSV.bigBed\ labelFields none\ longLabel MCF-7 ELK1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382WLL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF013WSV\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocytePerirenalDonor1_CNhs12065_ctss_fwd PreadipocytePerirenalD1+ bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward 0 2731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocytePerirenalDonor1_CNhs12065_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_tpm_fwd PreadipocytePerirenalD1+ bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward 1 2731 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocytePerirenalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocytePerirenalDonor1_CNhs12065_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF841CYA ENCSR362JSZ Signal bigWig Hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days DNase signal 2 2732 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/164e687f-85af-439e-8296-f05fa680da61/ENCFF841CYA.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 17 days, kit ligand for 17 days, hydrocortisone succinate for 17 days, erythropoietin for 17 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR362JSZ Signal\ track wgEncodeReg4Epigenetics_ENCFF841CYA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF123KER ENCSR382WLL Signal bigWig MCF-7 ELK1 ENCSR382WLL signal 2 2732 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/71ed64c5-f153-4d8d-b625-87a8348dfc80/ENCFF123KER.bigWig\ color 65,171,173\ longLabel MCF-7 ELK1 ENCSR382WLL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382WLL Signal\ track wgEncodeReg4TfChip_ENCFF123KER\ type bigWig\ visibility full\ PreadipocytePerirenalDonor1_CNhs12065_ctss_rev PreadipocytePerirenalD1- bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse 0 2732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocytePerirenalDonor1_CNhs12065_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ PreadipocytePerirenalDonor1_CNhs12065_tpm_rev PreadipocytePerirenalD1- bigWig Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse 1 2732 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20perirenal%2c%20donor1.CNhs12065.11469-119C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - perirenal, donor1_CNhs12065_11469-119C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11469-119C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocytePerirenalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocytePerirenalDonor1_CNhs12065_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11469-119C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF197XAQ ENCSR362QYU Peak bigBed 5 Suprapubic skin tissue male adult 37 years H3K4me3 peak 4 2733 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/2db2b0b2-abef-46c8-8fc9-ee68da2587c5/ENCFF197XAQ.bigBed\ color 255,0,0\ longLabel Suprapubic skin tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR362QYU Peak\ track wgEncodeReg4Epigenetics_ENCFF197XAQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF486SQU ENCSR382XLA Peak bigBed 5 HepG2 ZFP36 peaks 4 2733 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ea1a46ac-a9d2-48ca-a1fc-1d6ec33a125d/ENCFF486SQU.bigBed\ labelFields none\ longLabel HepG2 ZFP36 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382XLA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF486SQU\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_fwd PreadipocyteSubcutaneousD1+ bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward 0 2733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_fwd PreadipocyteSubcutaneousD1+ bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward 1 2733 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF508OUM ENCSR362QYU Signal bigWig Suprapubic skin tissue male adult 37 years H3K4me3 signal 2 2734 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/b3213487-18d2-48fb-bc1a-cc2293919610/ENCFF508OUM.bigWig\ color 255,0,0\ longLabel Suprapubic skin tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR362QYU Signal\ track wgEncodeReg4Epigenetics_ENCFF508OUM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF695ZSP ENCSR382XLA Signal bigWig HepG2 ZFP36 ENCSR382XLA signal 2 2734 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/5370768b-b9d4-4f69-a83a-7eaede7c40e4/ENCFF695ZSP.bigWig\ color 137,152,82\ longLabel HepG2 ZFP36 ENCSR382XLA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR382XLA Signal\ track wgEncodeReg4TfChip_ENCFF695ZSP\ type bigWig\ visibility full\ PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_rev PreadipocyteSubcutaneousD1- bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse 0 2734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor1_CNhs11081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_rev PreadipocyteSubcutaneousD1- bigWig Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse 1 2734 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor1.CNhs11081.11279-116I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor1_CNhs11081_11279-116I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11279-116I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor1_CNhs11081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11279-116I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF412KXN ENCSR362ZFC Peak bigBed 5 Type B pancreatic cell DNase peak 4 2735 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/1aea2d41-ec48-41d4-8195-218fa188b284/ENCFF412KXN.bigBed\ color 6,218,147\ labelFields none\ longLabel Type B pancreatic cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR362ZFC Peak\ track wgEncodeReg4Epigenetics_ENCFF412KXN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF552DZB ENCSR384LYW Peak bigBed 5 Hepatocyte originated from H9 EZH2 peaks 4 2735 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f8d093ef-6d51-46d8-815a-9734bd30acfd/ENCFF552DZB.bigBed\ labelFields none\ longLabel Hepatocyte originated from H9 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR384LYW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF552DZB\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_fwd PreadipocyteSubcutaneousD2+ bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward 0 2735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_fwd PreadipocyteSubcutaneousD2+ bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward 1 2735 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF647HDA ENCSR362ZFC Signal bigWig Type B pancreatic cell DNase signal 2 2736 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/deb8f985-0692-4406-ba9e-b2409a52942d/ENCFF647HDA.bigWig\ color 6,218,147\ longLabel Type B pancreatic cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR362ZFC Signal\ track wgEncodeReg4Epigenetics_ENCFF647HDA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF731WMD ENCSR384LYW Signal bigWig Hepatocyte originated from H9 EZH2 ENCSR384LYW signal 2 2736 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/417ffb0c-7c03-4068-8948-61881d8bd644/ENCFF731WMD.bigWig\ color 137,152,82\ longLabel Hepatocyte originated from H9 EZH2 ENCSR384LYW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR384LYW Signal\ track wgEncodeReg4TfChip_ENCFF731WMD\ type bigWig\ visibility full\ PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_rev PreadipocyteSubcutaneousD2- bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse 0 2736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor2_CNhs11981_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_rev PreadipocyteSubcutaneousD2- bigWig Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse 1 2736 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor2.CNhs11981.11356-117H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor2_CNhs11981_11356-117H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11356-117H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor2_CNhs11981_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11356-117H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF737FYL ENCSR363BTB Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years DNase peak 4 2737 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/809ce405-2d1f-47fa-8cf7-bac24730fa46/ENCFF737FYL.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta T cell male adult 21 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR363BTB Peak\ track wgEncodeReg4Epigenetics_ENCFF737FYL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF254ILB ENCSR384SQB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25 ZNF25 peaks 4 2737 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/997528df-ea85-4825-91b5-15e6d66f25e7/ENCFF254ILB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25 ZNF25 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR384SQB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF254ILB\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_fwd PreadipocyteSubcutaneousD3+ bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward 0 2737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_fwd PreadipocyteSubcutaneousD3+ bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward 1 2737 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF641UWX ENCSR363BTB Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years DNase signal 2 2738 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/1b4a7b23-0701-46e8-9de2-e351c167eeef/ENCFF641UWX.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta T cell male adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR363BTB Signal\ track wgEncodeReg4Epigenetics_ENCFF641UWX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF730RWY ENCSR384SQB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25 ZNF25 ENCSR384SQB signal 2 2738 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/f58a9cd3-ec6c-43ce-9206-fff56d3dc953/ENCFF730RWY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF25 ZNF25 ENCSR384SQB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR384SQB Signal\ track wgEncodeReg4TfChip_ENCFF730RWY\ type bigWig\ visibility full\ PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_rev PreadipocyteSubcutaneousD3- bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse 0 2738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor3_CNhs12038_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_rev PreadipocyteSubcutaneousD3- bigWig Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse 1 2738 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20subcutaneous%2c%20donor3.CNhs12038.11428-118G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - subcutaneous, donor3_CNhs12038_11428-118G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11428-118G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteSubcutaneousD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteSubcutaneousDonor3_CNhs12038_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11428-118G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF757CXO ENCSR363LUK Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 26 years treated with Interleukin-15 for 1 hour DNase peak 4 2739 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/374b9108-d832-4663-8519-cbb654e58190/ENCFF757CXO.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 26 years treated with Interleukin-15 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR363LUK Peak\ track wgEncodeReg4Epigenetics_ENCFF757CXO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF781QQQ ENCSR385AHH Peak bigBed 5 K562 ZNF24 peaks 4 2739 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/b786e75f-218f-45a4-ace8-a95b0654c8b2/ENCFF781QQQ.bigBed\ labelFields none\ longLabel K562 ZNF24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR385AHH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF781QQQ\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteVisceralDonor1_CNhs11082_ctss_fwd PreadipocyteVisceralD1+ bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward 0 2739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor1_CNhs11082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_tpm_fwd PreadipocyteVisceralD1+ bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward 1 2739 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor1_CNhs11082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF869HAF ENCSR363LUK Signal bigWig CD4-positive, alpha-beta T cell female adult 26 years treated with Interleukin-15 for 1 hour DNase signal 2 2740 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/fca1162a-b81a-4bfb-ba5f-3bb1826ce237/ENCFF869HAF.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 26 years treated with Interleukin-15 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR363LUK Signal\ track wgEncodeReg4Epigenetics_ENCFF869HAF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF578KUT ENCSR385AHH Signal bigWig K562 ZNF24 ENCSR385AHH signal 2 2740 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/6cb94d74-5467-4dff-9486-5d09b7f70728/ENCFF578KUT.bigWig\ color 254,75,173\ longLabel K562 ZNF24 ENCSR385AHH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR385AHH Signal\ track wgEncodeReg4TfChip_ENCFF578KUT\ type bigWig\ visibility full\ PreadipocyteVisceralDonor1_CNhs11082_ctss_rev PreadipocyteVisceralD1- bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse 0 2740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor1_CNhs11082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor1_CNhs11082_tpm_rev PreadipocyteVisceralD1- bigWig Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse 1 2740 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor1.CNhs11082.11280-116I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor1_CNhs11082_11280-116I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11280-116I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor1_CNhs11082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11280-116I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF435UYX ENCSR364MFN Peak bigBed 5 Hepatocyte originated from H9 DNase peak 4 2741 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/84c62519-9fe9-46cd-b486-7a272de6a13b/ENCFF435UYX.bigBed\ color 6,218,147\ labelFields none\ longLabel Hepatocyte originated from H9 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR364MFN Peak\ track wgEncodeReg4Epigenetics_ENCFF435UYX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF473CJK ENCSR385IUC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBX18 TBX18 peaks 4 2741 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/6c6bf36e-f6dc-435f-a44d-7d3d2458bcc8/ENCFF473CJK.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBX18 TBX18 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR385IUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF473CJK\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteVisceralDonor2_CNhs11982_ctss_fwd PreadipocyteVisceralD2+ bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward 0 2741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor2_CNhs11982_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_tpm_fwd PreadipocyteVisceralD2+ bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward 1 2741 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor2_CNhs11982_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF902EEH ENCSR364MFN Signal bigWig Hepatocyte originated from H9 DNase signal 2 2742 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/cf2997e6-27fe-49e2-a4f4-47b3b8f16d5f/ENCFF902EEH.bigWig\ color 6,218,147\ longLabel Hepatocyte originated from H9 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR364MFN Signal\ track wgEncodeReg4Epigenetics_ENCFF902EEH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF987SVV ENCSR385IUC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBX18 TBX18 ENCSR385IUC signal 2 2742 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/c3220401-d238-4c0d-9094-5e3230f32e6d/ENCFF987SVV.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBX18 TBX18 ENCSR385IUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR385IUC Signal\ track wgEncodeReg4TfChip_ENCFF987SVV\ type bigWig\ visibility full\ PreadipocyteVisceralDonor2_CNhs11982_ctss_rev PreadipocyteVisceralD2- bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse 0 2742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor2_CNhs11982_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor2_CNhs11982_tpm_rev PreadipocyteVisceralD2- bigWig Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse 1 2742 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor2.CNhs11982.11357-117H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor2_CNhs11982_11357-117H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11357-117H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor2_CNhs11982_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11357-117H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF619KVP ENCSR364OIK Peak bigBed 5 Multiple sclerosis naive B cell H3K27ac peak 4 2743 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d3d38660-1b0e-4f1c-91ec-ea7022d93e80/ENCFF619KVP.bigBed\ color 181,145,0\ longLabel Multiple sclerosis naive B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR364OIK Peak\ track wgEncodeReg4Epigenetics_ENCFF619KVP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF142DIE ENCSR386UBO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A ARID4A peaks 4 2743 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/10239c6d-6a68-4449-a281-13d301ad2544/ENCFF142DIE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A ARID4A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR386UBO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF142DIE\ type bigBed 5\ useScore 1\ visibility squish\ PreadipocyteVisceralDonor3_CNhs12039_ctss_fwd PreadipocyteVisceralD3+ bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward 0 2743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor3_CNhs12039_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_tpm_fwd PreadipocyteVisceralD3+ bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward 1 2743 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track PreadipocyteVisceralDonor3_CNhs12039_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF515AFJ ENCSR364OIK Signal bigWig Multiple sclerosis naive B cell H3K27ac signal 2 2744 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/fbf91d96-8368-4e21-bca2-82b3ff5fddff/ENCFF515AFJ.bigWig\ color 181,145,0\ longLabel Multiple sclerosis naive B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR364OIK Signal\ track wgEncodeReg4Epigenetics_ENCFF515AFJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF961AWI ENCSR386UBO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A ARID4A ENCSR386UBO signal 2 2744 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/b6e1284c-f4eb-457a-b4cb-9d88e3452e50/ENCFF961AWI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4A ARID4A ENCSR386UBO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR386UBO Signal\ track wgEncodeReg4TfChip_ENCFF961AWI\ type bigWig\ visibility full\ PreadipocyteVisceralDonor3_CNhs12039_ctss_rev PreadipocyteVisceralD3- bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse 0 2744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PreadipocyteVisceralD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor3_CNhs12039_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ PreadipocyteVisceralDonor3_CNhs12039_tpm_rev PreadipocyteVisceralD3- bigWig Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse 1 2744 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Preadipocyte%20-%20visceral%2c%20donor3.CNhs12039.11429-118G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Preadipocyte - visceral, donor3_CNhs12039_11429-118G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11429-118G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PreadipocyteVisceralD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track PreadipocyteVisceralDonor3_CNhs12039_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11429-118G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF578VIF ENCSR364TKL Peak bigBed 5 Renal pelvis tissue male embryo 97 days DNase peak 4 2745 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/db226cb6-6c9f-4b61-8def-df502036b512/ENCFF578VIF.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal pelvis tissue male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR364TKL Peak\ track wgEncodeReg4Epigenetics_ENCFF578VIF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF769YSM ENCSR386YIH Peak bigBed 5 Liver tissue female child (4 years) SP1 peaks 4 2745 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/8e6b5135-0ec5-41a1-b2d7-674c812e6787/ENCFF769YSM.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR386YIH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF769YSM\ type bigBed 5\ useScore 1\ visibility squish\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_fwd ProstateEpithelialCellsD1+ bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward 0 2745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_fwd ProstateEpithelialCellsD1+ bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward 1 2745 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF159MCJ ENCSR364TKL Signal bigWig Renal pelvis tissue male embryo 97 days DNase signal 2 2746 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/fd43db65-2050-44a2-9ffe-2bcf9c9287d9/ENCFF159MCJ.bigWig\ color 6,218,147\ longLabel Renal pelvis tissue male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR364TKL Signal\ track wgEncodeReg4Epigenetics_ENCFF159MCJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF320GQX ENCSR386YIH Signal bigWig Liver tissue female child (4 years) SP1 ENCSR386YIH signal 2 2746 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/5ef188c5-d6f2-41b9-870d-34769ad36e01/ENCFF320GQX.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) SP1 ENCSR386YIH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR386YIH Signal\ track wgEncodeReg4TfChip_ENCFF320GQX\ type bigWig\ visibility full\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_rev ProstateEpithelialCellsD1- bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse 0 2746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_rev ProstateEpithelialCellsD1- bigWig Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse 1 2746 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%20%28polarized%29%2c%20donor1.CNhs10882.11253-116F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells (polarized), donor1_CNhs10882_11253-116F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11253-116F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsPolarizedDonor1_CNhs10882_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11253-116F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF939GDD ENCSR365CUB Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads DNase peak 4 2747 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/18/ced537a2-6144-4c1d-8603-b58b0b129755/ENCFF939GDD.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR365CUB Peak\ track wgEncodeReg4Epigenetics_ENCFF939GDD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF341NJI ENCSR387BVC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3 DDIT3 peaks 4 2747 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/06a28c0c-d703-4cf4-986a-c18f7227afee/ENCFF341NJI.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3 DDIT3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387BVC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF341NJI\ type bigBed 5\ useScore 1\ visibility squish\ ProstateEpithelialCellsDonor2_CNhs11972_ctss_fwd ProstateEpithelialCellsD2+ bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward 0 2747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor2_CNhs11972_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_tpm_fwd ProstateEpithelialCellsD2+ bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward 1 2747 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor2_CNhs11972_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF600IHC ENCSR365CUB Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads DNase signal 2 2748 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/18/7308b430-67d0-46d8-bddc-2fe6732f1e87/ENCFF600IHC.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 35 years treated with anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR365CUB Signal\ track wgEncodeReg4Epigenetics_ENCFF600IHC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF643MLR ENCSR387BVC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3 DDIT3 ENCSR387BVC signal 2 2748 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/d38541f1-e864-4979-9b63-cc530620bf8f/ENCFF643MLR.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens DDIT3 DDIT3 ENCSR387BVC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387BVC Signal\ track wgEncodeReg4TfChip_ENCFF643MLR\ type bigWig\ visibility full\ ProstateEpithelialCellsDonor2_CNhs11972_ctss_rev ProstateEpithelialCellsD2- bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse 0 2748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor2_CNhs11972_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor2_CNhs11972_tpm_rev ProstateEpithelialCellsD2- bigWig Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse 1 2748 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor2.CNhs11972.11331-117E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor2_CNhs11972_11331-117E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11331-117E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor2_CNhs11972_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11331-117E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF827PQP ENCSR365FVU Peak bigBed 5 Posterior cingulate gyrus tissue male adult 78 years DNase peak 4 2749 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/ac351ff0-d912-410a-acf5-acec3ce294ad/ENCFF827PQP.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue male adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR365FVU Peak\ track wgEncodeReg4Epigenetics_ENCFF827PQP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF077DXQ ENCSR387JKT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM3A KDM3A peaks 4 2749 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/eaa7ab8a-3aeb-42f8-ab1b-a7d4d13813e7/ENCFF077DXQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM3A KDM3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387JKT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF077DXQ\ type bigBed 5\ useScore 1\ visibility squish\ ProstateEpithelialCellsDonor3_CNhs12014_ctss_fwd ProstateEpithelialCellsD3+ bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward 0 2749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor3_CNhs12014_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_tpm_fwd ProstateEpithelialCellsD3+ bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward 1 2749 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateEpithelialCellsDonor3_CNhs12014_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF148TKD ENCSR365FVU Signal bigWig Posterior cingulate gyrus tissue male adult 78 years DNase signal 2 2750 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/4379361e-8858-452e-b1cb-010ed1feafa3/ENCFF148TKD.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue male adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR365FVU Signal\ track wgEncodeReg4Epigenetics_ENCFF148TKD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF911YHV ENCSR387JKT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM3A KDM3A ENCSR387JKT signal 2 2750 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/65a725ea-26f4-4970-b749-c7ffff5b723e/ENCFF911YHV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM3A KDM3A ENCSR387JKT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387JKT Signal\ track wgEncodeReg4TfChip_ENCFF911YHV\ type bigWig\ visibility full\ ProstateEpithelialCellsDonor3_CNhs12014_ctss_rev ProstateEpithelialCellsD3- bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse 0 2750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor3_CNhs12014_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ ProstateEpithelialCellsDonor3_CNhs12014_tpm_rev ProstateEpithelialCellsD3- bigWig Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse 1 2750 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Epithelial%20Cells%2c%20donor3.CNhs12014.11404-118D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Epithelial Cells, donor3_CNhs12014_11404-118D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11404-118D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateEpithelialCellsDonor3_CNhs12014_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11404-118D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF336CEG ENCSR365NDK Peak bigBed 5 Ovary tissue female adult 51 years DNase peak 4 2751 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/49c51402-1fb3-472b-b32c-1b72ae3db172/ENCFF336CEG.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR365NDK Peak\ track wgEncodeReg4Epigenetics_ENCFF336CEG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF217ADF ENCSR387QUV Peak bigBed 5 GM12878 RELB peaks 4 2751 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/57a3317d-e24e-4e1e-9e21-03821b346c10/ENCFF217ADF.bigBed\ labelFields none\ longLabel GM12878 RELB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387QUV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF217ADF\ type bigBed 5\ useScore 1\ visibility squish\ ProstateStromalCellsDonor1_CNhs10883_ctss_fwd ProstateStromalCellsD1+ bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward 0 2751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor1_CNhs10883_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_tpm_fwd ProstateStromalCellsD1+ bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward 1 2751 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor1_CNhs10883_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF887BVC ENCSR365NDK Signal bigWig Ovary tissue female adult 51 years DNase signal 2 2752 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/e442cc35-82ea-48b0-8dfc-a4257f87b9ea/ENCFF887BVC.bigWig\ color 6,218,147\ longLabel Ovary tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR365NDK Signal\ track wgEncodeReg4Epigenetics_ENCFF887BVC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF099LLQ ENCSR387QUV Signal bigWig GM12878 RELB ENCSR387QUV signal 2 2752 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/3fb0aa78-3a8c-4638-9e63-6f07804db582/ENCFF099LLQ.bigWig\ color 254,75,173\ longLabel GM12878 RELB ENCSR387QUV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387QUV Signal\ track wgEncodeReg4TfChip_ENCFF099LLQ\ type bigWig\ visibility full\ ProstateStromalCellsDonor1_CNhs10883_ctss_rev ProstateStromalCellsD1- bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse 0 2752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor1_CNhs10883_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor1_CNhs10883_tpm_rev ProstateStromalCellsD1- bigWig Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse 1 2752 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor1.CNhs10883.11254-116F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor1_CNhs10883_11254-116F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11254-116F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor1_CNhs10883_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11254-116F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF727USP ENCSR366CEQ Peak bigBed 5 K562 treated with 1 μM AR-42 for 4 hours ATAC peak 4 2753 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/f8bfd6ba-0e3a-4d63-af4e-2cabeef37a5e/ENCFF727USP.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366CEQ Peak\ track wgEncodeReg4Epigenetics_ENCFF727USP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF251RVO ENCSR387SYS Peak bigBed 5 K562 DEAF1 peaks 4 2753 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/84a61d59-30c4-47c8-985d-d0ffd0aafe76/ENCFF251RVO.bigBed\ labelFields none\ longLabel K562 DEAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387SYS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF251RVO\ type bigBed 5\ useScore 1\ visibility squish\ ProstateStromalCellsDonor2_CNhs11973_ctss_fwd ProstateStromalCellsD2+ bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward 0 2753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor2_CNhs11973_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_tpm_fwd ProstateStromalCellsD2+ bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward 1 2753 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor2_CNhs11973_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF239OWJ ENCSR366CEQ Signal bigWig K562 treated with 1 μM AR-42 for 4 hours ATAC signal 2 2754 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/7910a89c-2009-4cbd-8ecc-823d00d8e345/ENCFF239OWJ.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM AR-42 for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366CEQ Signal\ track wgEncodeReg4Epigenetics_ENCFF239OWJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF981JSV ENCSR387SYS Signal bigWig K562 DEAF1 ENCSR387SYS signal 2 2754 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/fca57899-c62b-4c21-b8a8-cb18ff84eab0/ENCFF981JSV.bigWig\ color 254,75,173\ longLabel K562 DEAF1 ENCSR387SYS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387SYS Signal\ track wgEncodeReg4TfChip_ENCFF981JSV\ type bigWig\ visibility full\ ProstateStromalCellsDonor2_CNhs11973_ctss_rev ProstateStromalCellsD2- bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse 0 2754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor2_CNhs11973_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor2_CNhs11973_tpm_rev ProstateStromalCellsD2- bigWig Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse 1 2754 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor2.CNhs11973.11332-117E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor2_CNhs11973_11332-117E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11332-117E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor2_CNhs11973_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11332-117E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF047RIJ ENCSR366EGE Peak bigBed 5 Heart tissue embryo 101 days DNase peak 4 2755 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/cf7946ba-5ebe-46be-86d6-254f5ba2bb49/ENCFF047RIJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue embryo 101 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366EGE Peak\ track wgEncodeReg4Epigenetics_ENCFF047RIJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF958VUU ENCSR387TUH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EEA1 EEA1 peaks 4 2755 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/9acf7d78-031e-430a-9bc8-2a96b659be67/ENCFF958VUU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EEA1 EEA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387TUH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF958VUU\ type bigBed 5\ useScore 1\ visibility squish\ ProstateStromalCellsDonor3_CNhs12015_ctss_fwd ProstateStromalCellsD3+ bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward 0 2755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor3_CNhs12015_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_tpm_fwd ProstateStromalCellsD3+ bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward 1 2755 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track ProstateStromalCellsDonor3_CNhs12015_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF567OUR ENCSR366EGE Signal bigWig Heart tissue embryo 101 days DNase signal 2 2756 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/4cc5f549-3fbe-4fd6-b38e-2f9c99115663/ENCFF567OUR.bigWig\ color 6,218,147\ longLabel Heart tissue embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366EGE Signal\ track wgEncodeReg4Epigenetics_ENCFF567OUR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF247SAZ ENCSR387TUH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EEA1 EEA1 ENCSR387TUH signal 2 2756 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/1024d457-376e-42b5-b4d0-1ad49dec9118/ENCFF247SAZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EEA1 EEA1 ENCSR387TUH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387TUH Signal\ track wgEncodeReg4TfChip_ENCFF247SAZ\ type bigWig\ visibility full\ ProstateStromalCellsDonor3_CNhs12015_ctss_rev ProstateStromalCellsD3- bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse 0 2756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateStromalCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor3_CNhs12015_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ ProstateStromalCellsDonor3_CNhs12015_tpm_rev ProstateStromalCellsD3- bigWig Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse 1 2756 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Prostate%20Stromal%20Cells%2c%20donor3.CNhs12015.11405-118E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Prostate Stromal Cells, donor3_CNhs12015_11405-118E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11405-118E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateStromalCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track ProstateStromalCellsDonor3_CNhs12015_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11405-118E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF939GDE ENCSR366EQH Peak bigBed 5 Large intestine tissue male embryo 115 days DNase peak 4 2757 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/2c9fbc14-90cc-4043-acbe-a4c86c8c2a43/ENCFF939GDE.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue male embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366EQH Peak\ track wgEncodeReg4Epigenetics_ENCFF939GDE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF968WBH ENCSR387UWP Peak bigBed 5 K562 HDAC1 peaks 4 2757 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/c4bceac7-fadc-4869-b267-f6c5cb9fa584/ENCFF968WBH.bigBed\ labelFields none\ longLabel K562 HDAC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387UWP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF968WBH\ type bigBed 5\ useScore 1\ visibility squish\ RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_fwd RcecD1+ bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward 0 2757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_fwd RcecD1+ bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward 1 2757 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF995LSG ENCSR366EQH Signal bigWig Large intestine tissue male embryo 115 days DNase signal 2 2758 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ed8f776d-00fa-4fa1-940c-50de8bb9faff/ENCFF995LSG.bigWig\ color 6,218,147\ longLabel Large intestine tissue male embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366EQH Signal\ track wgEncodeReg4Epigenetics_ENCFF995LSG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF633KJU ENCSR387UWP Signal bigWig K562 HDAC1 ENCSR387UWP signal 2 2758 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/9c8dc047-f75d-4b58-8eb8-74be949efdbe/ENCFF633KJU.bigWig\ color 254,75,173\ longLabel K562 HDAC1 ENCSR387UWP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR387UWP Signal\ track wgEncodeReg4TfChip_ENCFF633KJU\ type bigWig\ visibility full\ RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_rev RcecD1- bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse 0 2758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_rev RcecD1- bigWig Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse 1 2758 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor1.CNhs11331.11516-119H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor1_CNhs11331_11516-119H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11516-119H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor1_CNhs11331_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11516-119H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF199QQE ENCSR366NBE Peak bigBed 5 Calu3 DNase peak 4 2759 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/d0874ad9-38bb-4458-8745-2c073db46bc5/ENCFF199QQE.bigBed\ color 6,218,147\ labelFields none\ longLabel Calu3 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366NBE Peak\ track wgEncodeReg4Epigenetics_ENCFF199QQE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF215CWW ENCSR388QZF Peak bigBed 5 K562 POLR2A peaks 4 2759 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/054b4aa3-ee84-4641-88f5-c69df1625d8b/ENCFF215CWW.bigBed\ labelFields none\ longLabel K562 POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR388QZF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF215CWW\ type bigBed 5\ useScore 1\ visibility squish\ RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_fwd RcecD2+ bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward 0 2759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_fwd RcecD2+ bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward 1 2759 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF097WPE ENCSR366NBE Signal bigWig Calu3 DNase signal 2 2760 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/811cd93e-d04f-485a-86d9-b070a6c85bd1/ENCFF097WPE.bigWig\ color 6,218,147\ longLabel Calu3 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366NBE Signal\ track wgEncodeReg4Epigenetics_ENCFF097WPE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF806LCJ ENCSR388QZF Signal bigWig K562 POLR2A ENCSR388QZF signal 2 2760 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/20a4fadf-8455-4a10-bc8c-cae5f2200d56/ENCFF806LCJ.bigWig\ color 254,75,173\ longLabel K562 POLR2A ENCSR388QZF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR388QZF Signal\ track wgEncodeReg4TfChip_ENCFF806LCJ\ type bigWig\ visibility full\ RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_rev RcecD2- bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse 0 2760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RcecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_rev RcecD2- bigWig Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse 1 2760 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Cortical%20Epithelial%20Cells%2c%20donor2.CNhs12728.11596-120H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Cortical Epithelial Cells, donor2_CNhs12728_11596-120H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11596-120H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RcecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalCorticalEpithelialCellsDonor2_CNhs12728_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11596-120H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF083NBI ENCSR366YTD Peak bigBed 5 T-cell male adult 37 years DNase peak 4 2761 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/df0d70ab-b040-4ddf-85bf-e16a166c1f6b/ENCFF083NBI.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366YTD Peak\ track wgEncodeReg4Epigenetics_ENCFF083NBI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF986QSP ENCSR388ZRV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF311 ZNF311 peaks 4 2761 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/32b1e51b-aae2-4229-9db7-c588cecb055a/ENCFF986QSP.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF311 ZNF311 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR388ZRV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF986QSP\ type bigBed 5\ useScore 1\ visibility squish\ RenalEpithelialCellsDonor1_CNhs11332_ctss_fwd RenalEpithelialCellsD1+ bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward 0 2761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor1_CNhs11332_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_tpm_fwd RenalEpithelialCellsD1+ bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward 1 2761 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor1_CNhs11332_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF470NUO ENCSR366YTD Signal bigWig T-cell male adult 37 years DNase signal 2 2762 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/5b28c898-2e2b-4d14-a330-2ed967aeb5e8/ENCFF470NUO.bigWig\ color 6,218,147\ longLabel T-cell male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR366YTD Signal\ track wgEncodeReg4Epigenetics_ENCFF470NUO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF334LHK ENCSR388ZRV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF311 ZNF311 ENCSR388ZRV signal 2 2762 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/a621225f-a2f1-41cd-9960-3546a94835f0/ENCFF334LHK.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF311 ZNF311 ENCSR388ZRV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR388ZRV Signal\ track wgEncodeReg4TfChip_ENCFF334LHK\ type bigWig\ visibility full\ RenalEpithelialCellsDonor1_CNhs11332_ctss_rev RenalEpithelialCellsD1- bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse 0 2762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor1_CNhs11332_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor1_CNhs11332_tpm_rev RenalEpithelialCellsD1- bigWig Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse 1 2762 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor1.CNhs11332.11517-119H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor1_CNhs11332_11517-119H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11517-119H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor1_CNhs11332_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11517-119H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF801IGF ENCSR367EKE Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 peak 4 2763 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/34deeb8b-1785-4071-a8f2-6cbb8af94ea9/ENCFF801IGF.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR367EKE Peak\ track wgEncodeReg4Epigenetics_ENCFF801IGF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF683TPZ ENCSR389PWB Peak bigBed 5 K562 ZBTB5 peaks 4 2763 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6c43bcd7-7c72-410b-8bfb-1c4f345e3ab8/ENCFF683TPZ.bigBed\ labelFields none\ longLabel K562 ZBTB5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR389PWB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF683TPZ\ type bigBed 5\ useScore 1\ visibility squish\ RenalEpithelialCellsDonor2_CNhs12088_ctss_fwd RenalEpithelialCellsD2+ bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward 0 2763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor2_CNhs12088_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor2_CNhs12088_tpm_fwd RenalEpithelialCellsD2+ bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward 1 2763 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor2_CNhs12088_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF507AEW ENCSR367EKE Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 signal 2 2764 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/3dbdb4a4-2038-4c16-a823-8d82320aad8b/ENCFF507AEW.bigWig\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR367EKE Signal\ track wgEncodeReg4Epigenetics_ENCFF507AEW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF808GHX ENCSR389PWB Signal bigWig K562 ZBTB5 ENCSR389PWB signal 2 2764 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/deb3b3b2-65f6-489e-9c98-4c5c9b952084/ENCFF808GHX.bigWig\ color 254,75,173\ longLabel K562 ZBTB5 ENCSR389PWB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR389PWB Signal\ track wgEncodeReg4TfChip_ENCFF808GHX\ type bigWig\ visibility full\ RenalEpithelialCellsDonor2_CNhs12088_ctss_rev RenalEpithelialCellsD2- bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse 0 2764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor2_CNhs12088_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor2_CNhs12088_tpm_rev RenalEpithelialCellsD2- bigWig Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse 1 2764 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor2.CNhs12088.11597-120H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor2_CNhs12088_11597-120H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11597-120H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor2_CNhs12088_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11597-120H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF433HUG ENCSR367VRA Peak bigBed 5 Adipocyte originated from mesenchymal stem cell H3K4me3 peak 4 2765 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5bf72b1b-964b-44ca-bda9-bbf0433fc797/ENCFF433HUG.bigBed\ color 255,0,0\ longLabel Adipocyte originated from mesenchymal stem cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR367VRA Peak\ track wgEncodeReg4Epigenetics_ENCFF433HUG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF820IGH ENCSR390VGH Peak bigBed 5 K562 MNT peaks 4 2765 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/3f14b6c2-3edb-4f74-8fe7-46ccd09a50a5/ENCFF820IGH.bigBed\ labelFields none\ longLabel K562 MNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR390VGH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF820IGH\ type bigBed 5\ useScore 1\ visibility squish\ RenalEpithelialCellsDonor3_CNhs12732_ctss_fwd RenalEpithelialCellsD3+ bigWig Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward 0 2765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor3.CNhs12732.11678-122H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11678-122H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor3_CNhs12732_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor3_CNhs12732_tpm_fwd RenalEpithelialCellsD3+ bigWig Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward 1 2765 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor3.CNhs12732.11678-122H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11678-122H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalEpithelialCellsDonor3_CNhs12732_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF968LWB ENCSR367VRA Signal bigWig Adipocyte originated from mesenchymal stem cell H3K4me3 signal 2 2766 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c7f816b3-db9e-4542-9275-bfe469ad1e5d/ENCFF968LWB.bigWig\ color 255,0,0\ longLabel Adipocyte originated from mesenchymal stem cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR367VRA Signal\ track wgEncodeReg4Epigenetics_ENCFF968LWB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF611RGV ENCSR390VGH Signal bigWig K562 MNT ENCSR390VGH signal 2 2766 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/fcebfd23-2a85-4a72-85b4-df278e514d6c/ENCFF611RGV.bigWig\ color 254,75,173\ longLabel K562 MNT ENCSR390VGH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR390VGH Signal\ track wgEncodeReg4TfChip_ENCFF611RGV\ type bigWig\ visibility full\ RenalEpithelialCellsDonor3_CNhs12732_ctss_rev RenalEpithelialCellsD3- bigWig Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_reverse 0 2766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor3.CNhs12732.11678-122H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11678-122H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor3_CNhs12732_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4\ urlLabel FANTOM5 Details:\ RenalEpithelialCellsDonor3_CNhs12732_tpm_rev RenalEpithelialCellsD3- bigWig Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_reverse 1 2766 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Epithelial%20Cells%2c%20donor3.CNhs12732.11678-122H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Epithelial Cells, donor3_CNhs12732_11678-122H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11678-122H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalEpithelialCellsDonor3_CNhs12732_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11678-122H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF123CUF ENCSR367WYJ Peak bigBed 5 Psoas muscle tissue male child 3 years H3K27ac peak 4 2767 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8be70700-0508-4ed7-8a23-f83d7fb9f027/ENCFF123CUF.bigBed\ color 181,145,0\ longLabel Psoas muscle tissue male child 3 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR367WYJ Peak\ track wgEncodeReg4Epigenetics_ENCFF123CUF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF833PNP ENCSR391JII Peak bigBed 5 MCF-7 RCOR1 peaks 4 2767 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/970895d4-c91b-40eb-bc93-60965185781f/ENCFF833PNP.bigBed\ labelFields none\ longLabel MCF-7 RCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR391JII Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF833PNP\ type bigBed 5\ useScore 1\ visibility squish\ RenalMesangialCellsDonor1_CNhs11333_ctss_fwd RenalMesangialCellsD1+ bigWig Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_forward 0 2767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor1.CNhs11333.11518-119H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11518-119H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalMesangialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalMesangialCellsDonor1_CNhs11333_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6\ urlLabel FANTOM5 Details:\ RenalMesangialCellsDonor1_CNhs11333_tpm_fwd RenalMesangialCellsD1+ bigWig Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_forward 1 2767 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor1.CNhs11333.11518-119H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11518-119H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalMesangialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalMesangialCellsDonor1_CNhs11333_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF375UAV ENCSR367WYJ Signal bigWig Psoas muscle tissue male child 3 years H3K27ac signal 2 2768 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/bdab95ca-9df4-4cfb-a1e8-fa3d86b3e892/ENCFF375UAV.bigWig\ color 181,145,0\ longLabel Psoas muscle tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR367WYJ Signal\ track wgEncodeReg4Epigenetics_ENCFF375UAV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF422YPM ENCSR391JII Signal bigWig MCF-7 RCOR1 ENCSR391JII signal 2 2768 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/9777302f-d443-49a1-8cce-225c5eac70ce/ENCFF422YPM.bigWig\ color 65,171,173\ longLabel MCF-7 RCOR1 ENCSR391JII signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR391JII Signal\ track wgEncodeReg4TfChip_ENCFF422YPM\ type bigWig\ visibility full\ RenalMesangialCellsDonor1_CNhs11333_ctss_rev RenalMesangialCellsD1- bigWig Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_reverse 0 2768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor1.CNhs11333.11518-119H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11518-119H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalMesangialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalMesangialCellsDonor1_CNhs11333_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6\ urlLabel FANTOM5 Details:\ RenalMesangialCellsDonor1_CNhs11333_tpm_rev RenalMesangialCellsD1- bigWig Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_reverse 1 2768 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor1.CNhs11333.11518-119H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Mesangial Cells, donor1_CNhs11333_11518-119H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11518-119H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalMesangialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalMesangialCellsDonor1_CNhs11333_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11518-119H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF127JRR ENCSR368BOE Peak bigBed 5 Lower lobe of left lung tissue male adult 60 years H3K4me3 peak 4 2769 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/1623fb8b-6f2b-480a-a3ef-8535e7900845/ENCFF127JRR.bigBed\ color 255,0,0\ longLabel Lower lobe of left lung tissue male adult 60 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368BOE Peak\ track wgEncodeReg4Epigenetics_ENCFF127JRR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF355KAI ENCSR391KQC Peak bigBed 5 MCF-7 MTA3 peaks 4 2769 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/3699476e-febe-4306-9a91-fdeac5bc1582/ENCFF355KAI.bigBed\ labelFields none\ longLabel MCF-7 MTA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR391KQC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF355KAI\ type bigBed 5\ useScore 1\ visibility squish\ RenalMesangialCellsDonor2_CNhs12089_ctss_fwd RenalMesangialCellsD2+ bigWig Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_forward 0 2769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor2.CNhs12089.11598-120H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11598-120H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalMesangialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalMesangialCellsDonor2_CNhs12089_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5\ urlLabel FANTOM5 Details:\ RenalMesangialCellsDonor2_CNhs12089_tpm_fwd RenalMesangialCellsD2+ bigWig Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_forward 1 2769 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor2.CNhs12089.11598-120H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11598-120H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalMesangialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalMesangialCellsDonor2_CNhs12089_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF032IZZ ENCSR368BOE Signal bigWig Lower lobe of left lung tissue male adult 60 years H3K4me3 signal 2 2770 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/7b36a828-788c-437d-842d-8b0d51f5d2df/ENCFF032IZZ.bigWig\ color 255,0,0\ longLabel Lower lobe of left lung tissue male adult 60 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368BOE Signal\ track wgEncodeReg4Epigenetics_ENCFF032IZZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF020TLN ENCSR391KQC Signal bigWig MCF-7 MTA3 ENCSR391KQC signal 2 2770 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/6e67163d-44c9-4808-9c00-d0b0f82a629e/ENCFF020TLN.bigWig\ color 65,171,173\ longLabel MCF-7 MTA3 ENCSR391KQC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR391KQC Signal\ track wgEncodeReg4TfChip_ENCFF020TLN\ type bigWig\ visibility full\ RenalMesangialCellsDonor2_CNhs12089_ctss_rev RenalMesangialCellsD2- bigWig Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_reverse 0 2770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor2.CNhs12089.11598-120H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11598-120H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalMesangialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalMesangialCellsDonor2_CNhs12089_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5\ urlLabel FANTOM5 Details:\ RenalMesangialCellsDonor2_CNhs12089_tpm_rev RenalMesangialCellsD2- bigWig Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_reverse 1 2770 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor2.CNhs12089.11598-120H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Mesangial Cells, donor2_CNhs12089_11598-120H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11598-120H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalMesangialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalMesangialCellsDonor2_CNhs12089_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11598-120H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF093IEJ ENCSR368CYW Peak bigBed 5 NCI-H929 H3K27ac peak 4 2771 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/15/4e5b97ed-0056-474d-8a4a-d5c773586cc9/ENCFF093IEJ.bigBed\ color 181,145,0\ longLabel NCI-H929 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368CYW Peak\ track wgEncodeReg4Epigenetics_ENCFF093IEJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF849HUG ENCSR391ZKN Peak bigBed 5 Peyer's patch tissue female adult (51 years) CTCF peaks 4 2771 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/7977fa82-4d18-4ba1-8528-b2c44ba98b5f/ENCFF849HUG.bigBed\ labelFields none\ longLabel Peyer's patch tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR391ZKN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF849HUG\ type bigBed 5\ useScore 1\ visibility squish\ RenalMesangialCellsDonor3_CNhs12121_ctss_fwd RenalMesangialCellsD3+ bigWig Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_forward 0 2771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor3.CNhs12121.11679-122H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11679-122H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalMesangialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalMesangialCellsDonor3_CNhs12121_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5\ urlLabel FANTOM5 Details:\ RenalMesangialCellsDonor3_CNhs12121_tpm_fwd RenalMesangialCellsD3+ bigWig Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_forward 1 2771 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor3.CNhs12121.11679-122H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11679-122H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalMesangialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalMesangialCellsDonor3_CNhs12121_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF900UMO ENCSR368CYW Signal bigWig NCI-H929 H3K27ac signal 2 2772 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/15/ccd40088-a846-41bc-a418-7403dbb31061/ENCFF900UMO.bigWig\ color 181,145,0\ longLabel NCI-H929 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368CYW Signal\ track wgEncodeReg4Epigenetics_ENCFF900UMO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF715AGA ENCSR391ZKN Signal bigWig Peyer's patch tissue female adult (51 years) CTCF ENCSR391ZKN signal 2 2772 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/67daca48-a961-4037-a349-5968c8d1f025/ENCFF715AGA.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (51 years) CTCF ENCSR391ZKN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR391ZKN Signal\ track wgEncodeReg4TfChip_ENCFF715AGA\ type bigWig\ visibility full\ RenalMesangialCellsDonor3_CNhs12121_ctss_rev RenalMesangialCellsD3- bigWig Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_reverse 0 2772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor3.CNhs12121.11679-122H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11679-122H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RenalMesangialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalMesangialCellsDonor3_CNhs12121_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5\ urlLabel FANTOM5 Details:\ RenalMesangialCellsDonor3_CNhs12121_tpm_rev RenalMesangialCellsD3- bigWig Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_reverse 1 2772 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Mesangial%20Cells%2c%20donor3.CNhs12121.11679-122H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Mesangial Cells, donor3_CNhs12121_11679-122H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11679-122H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RenalMesangialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalMesangialCellsDonor3_CNhs12121_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11679-122H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF584SYY ENCSR368FYV Peak bigBed 5 HG02852 ATAC peak 4 2773 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/71584619-a253-4cf9-9b39-3cba664df1aa/ENCFF584SYY.bigBed\ color 2,199,185\ longLabel HG02852 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368FYV Peak\ track wgEncodeReg4Epigenetics_ENCFF584SYY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF826JTX ENCSR392SFJ Peak bigBed 5 Uterus tissue female adult (53 years) CTCF peaks 4 2773 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/08/11/aad5774f-e8c0-4193-837f-a0112e5111cb/ENCFF826JTX.bigBed\ labelFields none\ longLabel Uterus tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR392SFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF826JTX\ type bigBed 5\ useScore 1\ visibility squish\ RenalGlomerularEndothelialCellsDonor1_CNhs12074_ctss_fwd RgecD1+ bigWig Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_forward 0 2773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor1.CNhs12074.11514-119H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11514-119H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor1_CNhs12074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor1_CNhs12074_tpm_fwd RgecD1+ bigWig Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_forward 1 2773 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor1.CNhs12074.11514-119H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11514-119H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor1_CNhs12074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF893KEJ ENCSR368FYV Signal bigWig HG02852 ATAC signal 2 2774 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/9c3e3c6a-9f09-4bc4-90c3-5ce96ddf92a0/ENCFF893KEJ.bigWig\ color 2,199,185\ longLabel HG02852 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368FYV Signal\ track wgEncodeReg4Epigenetics_ENCFF893KEJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF685VPJ ENCSR392SFJ Signal bigWig Uterus tissue female adult (53 years) CTCF ENCSR392SFJ signal 2 2774 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/3e0b0d85-895a-4737-8734-338310c6897a/ENCFF685VPJ.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (53 years) CTCF ENCSR392SFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR392SFJ Signal\ track wgEncodeReg4TfChip_ENCFF685VPJ\ type bigWig\ visibility full\ RenalGlomerularEndothelialCellsDonor1_CNhs12074_ctss_rev RgecD1- bigWig Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse 0 2774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor1.CNhs12074.11514-119H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11514-119H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor1_CNhs12074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor1_CNhs12074_tpm_rev RgecD1- bigWig Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse 1 2774 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor1.CNhs12074.11514-119H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor1_CNhs12074_11514-119H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11514-119H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor1_CNhs12074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11514-119H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF023FOB ENCSR368YPC Peak bigBed 5 Peripheral blood mononuclear cell male adult 32 years H3K4me3 peak 4 2775 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3e3b63dc-c96d-4e46-b2d2-eb44d2847452/ENCFF023FOB.bigBed\ color 255,0,0\ longLabel Peripheral blood mononuclear cell male adult 32 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368YPC Peak\ track wgEncodeReg4Epigenetics_ENCFF023FOB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF348IBL ENCSR395HWC Peak bigBed 5 K562 IKZF1 peaks 4 2775 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/255b8dcd-e67d-4092-aed0-b25b4381c0aa/ENCFF348IBL.bigBed\ labelFields none\ longLabel K562 IKZF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR395HWC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF348IBL\ type bigBed 5\ useScore 1\ visibility squish\ RenalGlomerularEndothelialCellsDonor2_CNhs12086_ctss_fwd RgecD2+ bigWig Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_forward 0 2775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor2.CNhs12086.11594-120H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11594-120H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor2_CNhs12086_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor2_CNhs12086_tpm_fwd RgecD2+ bigWig Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_forward 1 2775 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor2.CNhs12086.11594-120H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11594-120H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor2_CNhs12086_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF677KJI ENCSR368YPC Signal bigWig Peripheral blood mononuclear cell male adult 32 years H3K4me3 signal 2 2776 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6ef533ba-a1e5-4f96-9117-aeb5ea7d532b/ENCFF677KJI.bigWig\ color 255,0,0\ longLabel Peripheral blood mononuclear cell male adult 32 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR368YPC Signal\ track wgEncodeReg4Epigenetics_ENCFF677KJI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF053QLR ENCSR395HWC Signal bigWig K562 IKZF1 ENCSR395HWC signal 2 2776 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/634ebbf3-ea59-4902-b819-64f70a8e2466/ENCFF053QLR.bigWig\ color 254,75,173\ longLabel K562 IKZF1 ENCSR395HWC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR395HWC Signal\ track wgEncodeReg4TfChip_ENCFF053QLR\ type bigWig\ visibility full\ RenalGlomerularEndothelialCellsDonor2_CNhs12086_ctss_rev RgecD2- bigWig Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_reverse 0 2776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor2.CNhs12086.11594-120H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11594-120H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor2_CNhs12086_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor2_CNhs12086_tpm_rev RgecD2- bigWig Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_reverse 1 2776 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor2.CNhs12086.11594-120H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor2_CNhs12086_11594-120H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11594-120H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor2_CNhs12086_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11594-120H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF433UFM ENCSR369RRE Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 74 years CTCF peak 4 2777 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/099b7155-698d-4403-82ff-13c233cc3232/ENCFF433UFM.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 74 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR369RRE Peak\ track wgEncodeReg4Epigenetics_ENCFF433UFM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF607HXA ENCSR395MHA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 BRD4 peaks 4 2777 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/a1afae10-c86c-4c50-8403-fdcbecc2471c/ENCFF607HXA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 BRD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR395MHA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF607HXA\ type bigBed 5\ useScore 1\ visibility squish\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_fwd RgecD3+ bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward 0 2777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_fwd RgecD3+ bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward 1 2777 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF326PAG ENCSR369RRE Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 74 years CTCF signal 2 2778 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/3b1c6281-7d0f-4049-ba92-93848ed3ede8/ENCFF326PAG.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 74 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR369RRE Signal\ track wgEncodeReg4Epigenetics_ENCFF326PAG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF944FDJ ENCSR395MHA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 BRD4 ENCSR395MHA signal 2 2778 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/8d710176-37df-452f-ab5d-742f6f5f4683/ENCFF944FDJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 BRD4 ENCSR395MHA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR395MHA Signal\ track wgEncodeReg4TfChip_ENCFF944FDJ\ type bigWig\ visibility full\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_rev RgecD3- bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse 0 2778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_rev RgecD3- bigWig Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse 1 2778 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor3.CNhs12624.11675-122H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor3_CNhs12624_11675-122H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11675-122H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor3_CNhs12624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11675-122H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF503XXP ENCSR369WMO Peak bigBed 5 Immature natural killer cell H3K4me3 peak 4 2779 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/8c6fd066-c34d-4630-bf70-11b76fc3071a/ENCFF503XXP.bigBed\ color 255,0,0\ longLabel Immature natural killer cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR369WMO Peak\ track wgEncodeReg4Epigenetics_ENCFF503XXP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF348VDD ENCSR396QWK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 peaks 4 2779 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a3f95502-5e0c-4192-b328-5bd3d6820d63/ENCFF348VDD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR396QWK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF348VDD\ type bigBed 5\ useScore 1\ visibility squish\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_fwd RgecD4+ bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward 0 2779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_fwd RgecD4+ bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward 1 2779 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF934KNB ENCSR369WMO Signal bigWig Immature natural killer cell H3K4me3 signal 2 2780 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/40f42669-8aef-4356-a500-b079a8f992e5/ENCFF934KNB.bigWig\ color 255,0,0\ longLabel Immature natural killer cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR369WMO Signal\ track wgEncodeReg4Epigenetics_ENCFF934KNB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF977UIV ENCSR396QWK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 ENCSR396QWK signal 2 2780 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d75b07bd-e094-4ae8-a03b-477903a94dc2/ENCFF977UIV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBD1 MBD1 ENCSR396QWK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR396QWK Signal\ track wgEncodeReg4TfChip_ENCFF977UIV\ type bigWig\ visibility full\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_rev RgecD4- bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse 0 2780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RgecD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_rev RgecD4- bigWig Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse 1 2780 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Glomerular%20Endothelial%20Cells%2c%20donor4.CNhs13080.11783-124B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Glomerular Endothelial Cells, donor4_CNhs13080_11783-124B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11783-124B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RgecD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalGlomerularEndothelialCellsDonor4_CNhs13080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11783-124B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF805GMZ ENCSR370JJY Peak bigBed 5 GM23338 H3K27ac peak 4 2781 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/26/670be60f-3d61-4b33-8892-ce5ce2c76e6f/ENCFF805GMZ.bigBed\ color 181,145,0\ longLabel GM23338 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR370JJY Peak\ track wgEncodeReg4Epigenetics_ENCFF805GMZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF825WPU ENCSR396SOH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF792 ZNF792 peaks 4 2781 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/66072a16-6326-4f55-bb83-fcdd1651d3c9/ENCFF825WPU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF792 ZNF792 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR396SOH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF825WPU\ type bigBed 5\ useScore 1\ visibility squish\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_fwd RpecD0+ bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward 0 2781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_fwd RpecD0+ bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward 1 2781 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF114QME ENCSR370JJY Signal bigWig GM23338 H3K27ac signal 2 2782 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a4e9374b-d693-4ae3-90d3-84bbde3fa148/ENCFF114QME.bigWig\ color 181,145,0\ longLabel GM23338 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR370JJY Signal\ track wgEncodeReg4Epigenetics_ENCFF114QME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF761GWE ENCSR396SOH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF792 ZNF792 ENCSR396SOH signal 2 2782 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4975f5b4-659c-4dbc-b466-16117fa9bf22/ENCFF761GWE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF792 ZNF792 ENCSR396SOH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR396SOH Signal\ track wgEncodeReg4TfChip_ENCFF761GWE\ type bigWig\ visibility full\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_rev RpecD0- bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_reverse 0 2782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_rev RpecD0- bigWig Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_reverse 1 2782 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor0.CNhs10842.11215-116A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor0_CNhs10842_11215-116A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11215-116A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor0_CNhs10842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11215-116A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF890OSD ENCSR370OQJ Peak bigBed 5 Heart right ventricle tissue male adult 40 years H3K27ac peak 4 2783 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/ada9cd16-d674-43c6-ac01-ca3f9652f1eb/ENCFF890OSD.bigBed\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 40 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR370OQJ Peak\ track wgEncodeReg4Epigenetics_ENCFF890OSD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF390FEL ENCSR396XDF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24 ZBTB24 peaks 4 2783 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/3a15d3c3-7654-49cf-84aa-80fc358e4113/ENCFF390FEL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24 ZBTB24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR396XDF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF390FEL\ type bigBed 5\ useScore 1\ visibility squish\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_fwd RpecD1+ bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward 0 2783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_fwd RpecD1+ bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward 1 2783 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF378PDO ENCSR370OQJ Signal bigWig Heart right ventricle tissue male adult 40 years H3K27ac signal 2 2784 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/b9230097-6283-4a26-8918-149e94b13658/ENCFF378PDO.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 40 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR370OQJ Signal\ track wgEncodeReg4Epigenetics_ENCFF378PDO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF369FAQ ENCSR396XDF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24 ZBTB24 ENCSR396XDF signal 2 2784 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/6eb7c179-16fb-4107-ae08-37a17369902d/ENCFF369FAQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB24 ZBTB24 ENCSR396XDF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR396XDF Signal\ track wgEncodeReg4TfChip_ENCFF369FAQ\ type bigWig\ visibility full\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_rev RpecD1- bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse 0 2784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_rev RpecD1- bigWig Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse 1 2784 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor1.CNhs11338.11528-119I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor1_CNhs11338_11528-119I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11528-119I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor1_CNhs11338_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11528-119I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF315QVY ENCSR371CCL Peak bigBed 5 Suppressor macrophage male adult 21 years and male adult 40 years DNase peak 4 2785 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/c4aef8f8-185d-40c9-8bc7-c5d54fb9e2ed/ENCFF315QVY.bigBed\ color 6,218,147\ labelFields none\ longLabel Suppressor macrophage male adult 21 years and male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR371CCL Peak\ track wgEncodeReg4Epigenetics_ENCFF315QVY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF558HSJ ENCSR397DQC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF16 KLF16 peaks 4 2785 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/83790b9d-4a21-4565-9608-076d5ac9247f/ENCFF558HSJ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF16 KLF16 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR397DQC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF558HSJ\ type bigBed 5\ useScore 1\ visibility squish\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_fwd RpecD2+ bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward 0 2785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_fwd RpecD2+ bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward 1 2785 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF703OAE ENCSR371CCL Signal bigWig Suppressor macrophage male adult 21 years and male adult 40 years DNase signal 2 2786 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/43783b8a-106c-4882-a210-09f9caa8dcce/ENCFF703OAE.bigWig\ color 6,218,147\ longLabel Suppressor macrophage male adult 21 years and male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR371CCL Signal\ track wgEncodeReg4Epigenetics_ENCFF703OAE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF277FMH ENCSR397DQC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF16 KLF16 ENCSR397DQC signal 2 2786 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/6767533f-6227-4de8-92d4-c5e185ce2468/ENCFF277FMH.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF16 KLF16 ENCSR397DQC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR397DQC Signal\ track wgEncodeReg4TfChip_ENCFF277FMH\ type bigWig\ visibility full\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_rev RpecD2- bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse 0 2786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_rev RpecD2- bigWig Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse 1 2786 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor2.CNhs12096.11608-120I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor2_CNhs12096_11608-120I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11608-120I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor2_CNhs12096_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11608-120I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF171JYV ENCSR371KRY Peak bigBed 5 Fibroblast of skin of left quadriceps male embryo 97 days DNase peak 4 2787 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/f2004bcd-2951-4c92-89d9-ed4e3bd76610/ENCFF171JYV.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of skin of left quadriceps male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR371KRY Peak\ track wgEncodeReg4Epigenetics_ENCFF171JYV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF471YCZ ENCSR398RET Peak bigBed 5 Endodermal cell CTCF peaks 4 2787 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/bdb270e2-b3ef-4aec-bdac-5b596b9bd9a7/ENCFF471YCZ.bigBed\ labelFields none\ longLabel Endodermal cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR398RET Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF471YCZ\ type bigBed 5\ useScore 1\ visibility squish\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_fwd RpecD3+ bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward 0 2787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_fwd RpecD3+ bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward 1 2787 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF475BKV ENCSR371KRY Signal bigWig Fibroblast of skin of left quadriceps male embryo 97 days DNase signal 2 2788 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/2d14f5ab-d602-46e3-be93-28f8206de35e/ENCFF475BKV.bigWig\ color 6,218,147\ longLabel Fibroblast of skin of left quadriceps male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR371KRY Signal\ track wgEncodeReg4Epigenetics_ENCFF475BKV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF976GAM ENCSR398RET Signal bigWig Endodermal cell CTCF ENCSR398RET signal 2 2788 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/da4b751c-dae2-41f9-be5d-b776077f5961/ENCFF976GAM.bigWig\ color 118,158,101\ longLabel Endodermal cell CTCF ENCSR398RET signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR398RET Signal\ track wgEncodeReg4TfChip_ENCFF976GAM\ type bigWig\ visibility full\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_rev RpecD3- bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse 0 2788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RpecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_rev RpecD3- bigWig Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse 1 2788 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Retinal%20Pigment%20Epithelial%20Cells%2c%20donor3.CNhs12733.11689-122I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Retinal Pigment Epithelial Cells, donor3_CNhs12733_11689-122I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11689-122I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RpecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RetinalPigmentEpithelialCellsDonor3_CNhs12733_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11689-122I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF497XYX ENCSR372FFA Peak bigBed 5 H9 H3K27ac peak 4 2789 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/03/a91528a3-9bda-48e3-b703-2105ac514059/ENCFF497XYX.bigBed\ color 181,145,0\ longLabel H9 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR372FFA Peak\ track wgEncodeReg4Epigenetics_ENCFF497XYX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF076KPB ENCSR398TMP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN MYNN peaks 4 2789 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/309b4026-5157-4cb6-8657-ceb9f7176996/ENCFF076KPB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN MYNN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR398TMP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF076KPB\ type bigBed 5\ useScore 1\ visibility squish\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_fwd RptecD1+ bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward 0 2789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_fwd RptecD1+ bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward 1 2789 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF988WEQ ENCSR372FFA Signal bigWig H9 H3K27ac signal 2 2790 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/ec2f22ad-ae23-445e-b230-1d5d247a6c29/ENCFF988WEQ.bigWig\ color 181,145,0\ longLabel H9 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR372FFA Signal\ track wgEncodeReg4Epigenetics_ENCFF988WEQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF731GRK ENCSR398TMP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN MYNN ENCSR398TMP signal 2 2790 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/27bf20d5-9dd2-456c-9f29-c849d3d30b03/ENCFF731GRK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYNN MYNN ENCSR398TMP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR398TMP Signal\ track wgEncodeReg4TfChip_ENCFF731GRK\ type bigWig\ visibility full\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_rev RptecD1- bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse 0 2790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_rev RptecD1- bigWig Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse 1 2790 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor1.CNhs11330.11515-119H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor1_CNhs11330_11515-119H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11515-119H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor1_CNhs11330_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11515-119H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF308JQS ENCSR372IGW Peak bigBed 5 GM19395 ATAC peak 4 2791 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/3ce24fb9-2d59-4451-a575-0e27efa3dd65/ENCFF308JQS.bigBed\ color 2,199,185\ longLabel GM19395 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR372IGW Peak\ track wgEncodeReg4Epigenetics_ENCFF308JQS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF377NHG ENCSR400FSM Peak bigBed 5 K562 stably expressing POLR2H POLR2H peaks 4 2791 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/405d5c74-6d1a-4bd6-8b29-8202b61fa0b2/ENCFF377NHG.bigBed\ labelFields none\ longLabel K562 stably expressing POLR2H POLR2H peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR400FSM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF377NHG\ type bigBed 5\ useScore 1\ visibility squish\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_fwd RptecD2+ bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward 0 2791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_fwd RptecD2+ bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward 1 2791 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF060JKX ENCSR372IGW Signal bigWig GM19395 ATAC signal 2 2792 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/33b6636c-16b6-4dc3-99b6-fba0adc8735e/ENCFF060JKX.bigWig\ color 2,199,185\ longLabel GM19395 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR372IGW Signal\ track wgEncodeReg4Epigenetics_ENCFF060JKX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF828GWR ENCSR400FSM Signal bigWig K562 stably expressing POLR2H POLR2H ENCSR400FSM signal 2 2792 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/7174164a-01c0-4e74-b98c-c0d5f7b7a6aa/ENCFF828GWR.bigWig\ color 254,75,173\ longLabel K562 stably expressing POLR2H POLR2H ENCSR400FSM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR400FSM Signal\ track wgEncodeReg4TfChip_ENCFF828GWR\ type bigWig\ visibility full\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_rev RptecD2- bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse 0 2792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_rev RptecD2- bigWig Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse 1 2792 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor2.CNhs12087.11595-120H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor2_CNhs12087_11595-120H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11595-120H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor2_CNhs12087_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11595-120H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF245PVD ENCSR372JWF Peak bigBed 5 Middle frontal area 46 tissue male adult 71 years CTCF peak 4 2793 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/89d07e78-acb4-4361-af84-6eec6da26010/ENCFF245PVD.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 71 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR372JWF Peak\ track wgEncodeReg4Epigenetics_ENCFF245PVD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF597PHF ENCSR400JHG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF703 ZNF703 peaks 4 2793 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/1ced3045-a9e3-44a7-8159-6d9b94f48d06/ENCFF597PHF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF703 ZNF703 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR400JHG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF597PHF\ type bigBed 5\ useScore 1\ visibility squish\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_fwd RptecD3+ bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward 0 2793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_fwd RptecD3+ bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward 1 2793 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF816YAI ENCSR372JWF Signal bigWig Middle frontal area 46 tissue male adult 71 years CTCF signal 2 2794 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/794c8f1b-713c-43df-8013-950b4c99fd91/ENCFF816YAI.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue male adult 71 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR372JWF Signal\ track wgEncodeReg4Epigenetics_ENCFF816YAI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF562QLV ENCSR400JHG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF703 ZNF703 ENCSR400JHG signal 2 2794 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/ccdc4d48-97cf-4055-a046-87649f4d7dcc/ENCFF562QLV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF703 ZNF703 ENCSR400JHG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR400JHG Signal\ track wgEncodeReg4TfChip_ENCFF562QLV\ type bigWig\ visibility full\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_rev RptecD3- bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse 0 2794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RptecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_rev RptecD3- bigWig Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse 1 2794 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Renal%20Proximal%20Tubular%20Epithelial%20Cell%2c%20donor3.CNhs12120.11676-122H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Renal Proximal Tubular Epithelial Cell, donor3_CNhs12120_11676-122H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11676-122H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RptecD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track RenalProximalTubularEpithelialCellDonor3_CNhs12120_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11676-122H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF322ZQP ENCSR373BIX Peak bigBed 5 CD1c-positive myeloid dendritic cell DNase peak 4 2795 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/efe3fcfe-918d-4d98-befe-4bd1de24f530/ENCFF322ZQP.bigBed\ color 6,218,147\ labelFields none\ longLabel CD1c-positive myeloid dendritic cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373BIX Peak\ track wgEncodeReg4Epigenetics_ENCFF322ZQP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF045XXN ENCSR400WEK Peak bigBed 5 Breast epithelium tissue female adult (51 years) POLR2AphosphoS5 peaks 4 2795 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/d917ca00-4a46-40a4-902b-a31e5947d2c9/ENCFF045XXN.bigBed\ labelFields none\ longLabel Breast epithelium tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR400WEK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF045XXN\ type bigBed 5\ useScore 1\ visibility squish\ SalivaryAcinarCellsDonor1_CNhs12810_ctss_fwd SalivaryAcinarCellsD1+ bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_forward 0 2795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor1_CNhs12810_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_tpm_fwd SalivaryAcinarCellsD1+ bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_forward 1 2795 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor1_CNhs12810_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF389RQE ENCSR373BIX Signal bigWig CD1c-positive myeloid dendritic cell DNase signal 2 2796 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b72beb68-04b8-490f-8b09-01e4b80dca68/ENCFF389RQE.bigWig\ color 6,218,147\ longLabel CD1c-positive myeloid dendritic cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373BIX Signal\ track wgEncodeReg4Epigenetics_ENCFF389RQE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF854QDY ENCSR400WEK Signal bigWig Breast epithelium tissue female adult (51 years) POLR2AphosphoS5 ENCSR400WEK signal 2 2796 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/ec04d13f-5d81-45c4-b8dc-bcdb9bc5aa2c/ENCFF854QDY.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (51 years) POLR2AphosphoS5 ENCSR400WEK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR400WEK Signal\ track wgEncodeReg4TfChip_ENCFF854QDY\ type bigWig\ visibility full\ SalivaryAcinarCellsDonor1_CNhs12810_ctss_rev SalivaryAcinarCellsD1- bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse 0 2796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor1_CNhs12810_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor1_CNhs12810_tpm_rev SalivaryAcinarCellsD1- bigWig salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse 1 2796 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor1.CNhs12810.11771-123I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor1_CNhs12810_11771-123I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11771-123I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor1_CNhs12810_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11771-123I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF169IJH ENCSR373GMM Peak bigBed 5 Natural killer cell male adult 33 years ATAC peak 4 2797 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/9d5bc705-3a72-4f28-aab1-adf7a8bb6563/ENCFF169IJH.bigBed\ color 2,199,185\ longLabel Natural killer cell male adult 33 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373GMM Peak\ track wgEncodeReg4Epigenetics_ENCFF169IJH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF471FFM ENCSR401KRN Peak bigBed 5 Right atrium auricular region tissue female adult (53 years) CTCF peaks 4 2797 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/ff348813-9bad-45fd-bdd6-601f30d30c6f/ENCFF471FFM.bigBed\ labelFields none\ longLabel Right atrium auricular region tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR401KRN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF471FFM\ type bigBed 5\ useScore 1\ visibility squish\ SalivaryAcinarCellsDonor2_CNhs12811_ctss_fwd SalivaryAcinarCellsD2+ bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_forward 0 2797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor2_CNhs12811_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_tpm_fwd SalivaryAcinarCellsD2+ bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_forward 1 2797 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor2_CNhs12811_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF466HAO ENCSR373GMM Signal bigWig Natural killer cell male adult 33 years ATAC signal 2 2798 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/e1490993-0600-4969-9cc1-9abbaa3c71a3/ENCFF466HAO.bigWig\ color 2,199,185\ longLabel Natural killer cell male adult 33 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373GMM Signal\ track wgEncodeReg4Epigenetics_ENCFF466HAO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF760IZU ENCSR401KRN Signal bigWig Right atrium auricular region tissue female adult (53 years) CTCF ENCSR401KRN signal 2 2798 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/3999dbe5-bdaf-4afa-ba15-5fcd8e8397ee/ENCFF760IZU.bigWig\ color 116,50,165\ longLabel Right atrium auricular region tissue female adult (53 years) CTCF ENCSR401KRN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR401KRN Signal\ track wgEncodeReg4TfChip_ENCFF760IZU\ type bigWig\ visibility full\ SalivaryAcinarCellsDonor2_CNhs12811_ctss_rev SalivaryAcinarCellsD2- bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse 0 2798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor2_CNhs12811_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor2_CNhs12811_tpm_rev SalivaryAcinarCellsD2- bigWig salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse 1 2798 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor2.CNhs12811.11772-123I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor2_CNhs12811_11772-123I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11772-123I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor2_CNhs12811_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11772-123I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF203FIU ENCSR373MTM Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 2799 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/bf008dd3-74b8-4420-93a4-a0ec699fe556/ENCFF203FIU.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373MTM Peak\ track wgEncodeReg4Epigenetics_ENCFF203FIU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF216BYP ENCSR401ORC Peak bigBed 5 Vagina tissue female adult (53 years) POLR2A peaks 4 2799 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/5c5f55bc-da03-4c1f-ba57-553856177ddf/ENCFF216BYP.bigBed\ labelFields none\ longLabel Vagina tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR401ORC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF216BYP\ type bigBed 5\ useScore 1\ visibility squish\ SalivaryAcinarCellsDonor3_CNhs12812_ctss_fwd SalivaryAcinarCellsD3+ bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_forward 0 2799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor3_CNhs12812_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_tpm_fwd SalivaryAcinarCellsD3+ bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_forward 1 2799 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SalivaryAcinarCellsDonor3_CNhs12812_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF868CTT ENCSR373MTM Signal bigWig CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 2800 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/23e80420-eeef-4be1-be6b-1938361f5b27/ENCFF868CTT.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373MTM Signal\ track wgEncodeReg4Epigenetics_ENCFF868CTT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF455WXA ENCSR401ORC Signal bigWig Vagina tissue female adult (53 years) POLR2A ENCSR401ORC signal 2 2800 255 101 174 255 178 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/74218984-b932-4d8b-af53-4d8fba8334cb/ENCFF455WXA.bigWig\ color 255,101,174\ longLabel Vagina tissue female adult (53 years) POLR2A ENCSR401ORC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR401ORC Signal\ track wgEncodeReg4TfChip_ENCFF455WXA\ type bigWig\ visibility full\ SalivaryAcinarCellsDonor3_CNhs12812_ctss_rev SalivaryAcinarCellsD3- bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse 0 2800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryAcinarCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor3_CNhs12812_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ SalivaryAcinarCellsDonor3_CNhs12812_tpm_rev SalivaryAcinarCellsD3- bigWig salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse 1 2800 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20acinar%20cells%2c%20donor3.CNhs12812.11773-123I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary acinar cells, donor3_CNhs12812_11773-123I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11773-123I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryAcinarCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SalivaryAcinarCellsDonor3_CNhs12812_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11773-123I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF495FUG ENCSR373NFA Peak bigBed 5 Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak 4 2801 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/a9baa961-7440-4cdb-99fd-6158ed1f50c3/ENCFF495FUG.bigBed\ color 2,199,185\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373NFA Peak\ track wgEncodeReg4Epigenetics_ENCFF495FUG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF614TEV ENCSR401VBM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX2 ZHX2 peaks 4 2801 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/e14d24c2-05cc-421e-8c60-99d3b69620cf/ENCFF614TEV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX2 ZHX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR401VBM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF614TEV\ type bigBed 5\ useScore 1\ visibility squish\ SchwannCellsDonor1_CNhs12073_ctss_fwd SchwannCellsD1+ bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_forward 0 2801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor1_CNhs12073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_tpm_fwd SchwannCellsD1+ bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_forward 1 2801 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor1_CNhs12073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF093FUQ ENCSR373NFA Signal bigWig Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal 2 2802 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/add2f153-9b14-4cd1-8a9b-bfb19fd87e5e/ENCFF093FUQ.bigWig\ color 2,199,185\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373NFA Signal\ track wgEncodeReg4Epigenetics_ENCFF093FUQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF938CPV ENCSR401VBM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX2 ZHX2 ENCSR401VBM signal 2 2802 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/dadba3fa-c5ad-48fa-9150-6734bc917a88/ENCFF938CPV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZHX2 ZHX2 ENCSR401VBM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR401VBM Signal\ track wgEncodeReg4TfChip_ENCFF938CPV\ type bigWig\ visibility full\ SchwannCellsDonor1_CNhs12073_ctss_rev SchwannCellsD1- bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_reverse 0 2802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor1_CNhs12073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ SchwannCellsDonor1_CNhs12073_tpm_rev SchwannCellsD1- bigWig Schwann Cells, donor1_CNhs12073_11498-119F4_reverse 1 2802 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor1.CNhs12073.11498-119F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor1_CNhs12073_11498-119F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11498-119F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor1_CNhs12073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11498-119F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF981RSM ENCSR373TDL Peak bigBed 5 Right lobe of liver tissue female adult 53 years ATAC peak 4 2803 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/f056f07a-b718-4509-9742-995a8fdff582/ENCFF981RSM.bigBed\ color 2,199,185\ longLabel Right lobe of liver tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR373TDL Peak\ track wgEncodeReg4Epigenetics_ENCFF981RSM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF869JMQ ENCSR402IDP Peak bigBed 5 MM.1S CTCF peaks 4 2803 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/28166395-b523-42ae-9642-2c398cc25ce8/ENCFF869JMQ.bigBed\ labelFields none\ longLabel MM.1S CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402IDP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF869JMQ\ type bigBed 5\ useScore 1\ visibility squish\ SchwannCellsDonor2_CNhs12345_ctss_fwd SchwannCellsD2+ bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_forward 0 2803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor2_CNhs12345_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_tpm_fwd SchwannCellsD2+ bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_forward 1 2803 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor2_CNhs12345_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF614WHB ENCSR373TDL Signal bigWig Right lobe of liver tissue female adult 53 years ATAC signal 2 2804 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/23a4e1bc-fceb-4426-9e01-16a64bd90a3f/ENCFF614WHB.bigWig\ color 2,199,185\ longLabel Right lobe of liver tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR373TDL Signal\ track wgEncodeReg4Epigenetics_ENCFF614WHB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF838OJW ENCSR402IDP Signal bigWig MM.1S CTCF ENCSR402IDP signal 2 2804 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8eb45816-0445-4512-b14d-8b655994d2c6/ENCFF838OJW.bigWig\ color 254,75,173\ longLabel MM.1S CTCF ENCSR402IDP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402IDP Signal\ track wgEncodeReg4TfChip_ENCFF838OJW\ type bigWig\ visibility full\ SchwannCellsDonor2_CNhs12345_ctss_rev SchwannCellsD2- bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_reverse 0 2804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor2_CNhs12345_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor2_CNhs12345_tpm_rev SchwannCellsD2- bigWig Schwann Cells, donor2_CNhs12345_11578-120F3_reverse 1 2804 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor2.CNhs12345.11578-120F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor2_CNhs12345_11578-120F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11578-120F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor2_CNhs12345_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11578-120F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF291ORY ENCSR373TLU Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 86 years DNase peak 4 2805 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/126fed68-e34c-4b34-8f05-9db033c5223c/ENCFF291ORY.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 86 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373TLU Peak\ track wgEncodeReg4Epigenetics_ENCFF291ORY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF293CGZ ENCSR402JAC Peak bigBed 5 MCF-7 ZNF574 peaks 4 2805 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ce0d896c-83b3-42cf-8f6e-1b2b6b5eee60/ENCFF293CGZ.bigBed\ labelFields none\ longLabel MCF-7 ZNF574 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402JAC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF293CGZ\ type bigBed 5\ useScore 1\ visibility squish\ SchwannCellsDonor3_CNhs12621_ctss_fwd SchwannCellsD3+ bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_forward 0 2805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor3_CNhs12621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_tpm_fwd SchwannCellsD3+ bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_forward 1 2805 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SchwannCellsDonor3_CNhs12621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF108VDE ENCSR373TLU Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 86 years DNase signal 2 2806 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/6c40ea00-adfc-4518-a653-0c24bad93f15/ENCFF108VDE.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 86 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR373TLU Signal\ track wgEncodeReg4Epigenetics_ENCFF108VDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF901XZY ENCSR402JAC Signal bigWig MCF-7 ZNF574 ENCSR402JAC signal 2 2806 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/15b40b94-2f42-494e-b130-e33f6f8e6274/ENCFF901XZY.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF574 ENCSR402JAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402JAC Signal\ track wgEncodeReg4TfChip_ENCFF901XZY\ type bigWig\ visibility full\ SchwannCellsDonor3_CNhs12621_ctss_rev SchwannCellsD3- bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_reverse 0 2806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SchwannCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor3_CNhs12621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ SchwannCellsDonor3_CNhs12621_tpm_rev SchwannCellsD3- bigWig Schwann Cells, donor3_CNhs12621_11659-122F3_reverse 1 2806 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Schwann%20Cells%2c%20donor3.CNhs12621.11659-122F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Schwann Cells, donor3_CNhs12621_11659-122F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11659-122F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SchwannCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SchwannCellsDonor3_CNhs12621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11659-122F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF046GNG ENCSR374PKX Peak bigBed 5 Middle frontal area 46 tissue male adult 83 years CTCF peak 4 2807 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/317dac77-8d1e-4276-b3b7-bc0c577889b5/ENCFF046GNG.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 83 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR374PKX Peak\ track wgEncodeReg4Epigenetics_ENCFF046GNG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF746ZBJ ENCSR402OYZ Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA7 HOXA7 peaks 4 2807 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/28982d19-4014-48de-aeec-f4f079fdcced/ENCFF746ZBJ.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA7 HOXA7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402OYZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF746ZBJ\ type bigBed 5\ useScore 1\ visibility squish\ SebocyteDonor1_CNhs10847_ctss_fwd SebocyteD1+ bigWig Sebocyte, donor1_CNhs10847_11220-116B5_forward 0 2807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor1_CNhs10847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_tpm_fwd SebocyteD1+ bigWig Sebocyte, donor1_CNhs10847_11220-116B5_forward 1 2807 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor1_CNhs10847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF280OBE ENCSR374PKX Signal bigWig Middle frontal area 46 tissue male adult 83 years CTCF signal 2 2808 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/ea859882-9b71-4de7-9b88-684af1ec2552/ENCFF280OBE.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue male adult 83 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR374PKX Signal\ track wgEncodeReg4Epigenetics_ENCFF280OBE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF560VTI ENCSR402OYZ Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA7 HOXA7 ENCSR402OYZ signal 2 2808 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/8c5ce704-9291-4ef4-9651-bfb2e8da430a/ENCFF560VTI.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA7 HOXA7 ENCSR402OYZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402OYZ Signal\ track wgEncodeReg4TfChip_ENCFF560VTI\ type bigWig\ visibility full\ SebocyteDonor1_CNhs10847_ctss_rev SebocyteD1- bigWig Sebocyte, donor1_CNhs10847_11220-116B5_reverse 0 2808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor1_CNhs10847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ SebocyteDonor1_CNhs10847_tpm_rev SebocyteD1- bigWig Sebocyte, donor1_CNhs10847_11220-116B5_reverse 1 2808 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor1.CNhs10847.11220-116B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor1_CNhs10847_11220-116B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11220-116B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor1_CNhs10847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11220-116B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF603OCI ENCSR374VQC Peak bigBed 5 Right cardiac atrium tissue female adult 46 years DNase peak 4 2809 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/90d1715c-813f-45f5-a62b-b430a8ebe1be/ENCFF603OCI.bigBed\ color 6,218,147\ labelFields none\ longLabel Right cardiac atrium tissue female adult 46 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR374VQC Peak\ track wgEncodeReg4Epigenetics_ENCFF603OCI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF313FYC ENCSR402XII Peak bigBed 5 K562 CSDE1 peaks 4 2809 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/b73c61f7-3498-4daa-9863-5b9dbfff9ecd/ENCFF313FYC.bigBed\ labelFields none\ longLabel K562 CSDE1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402XII Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF313FYC\ type bigBed 5\ useScore 1\ visibility squish\ SebocyteDonor2_CNhs11951_ctss_fwd SebocyteD2+ bigWig Sebocyte, donor2_CNhs11951_11301-117B5_forward 0 2809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor2_CNhs11951_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_tpm_fwd SebocyteD2+ bigWig Sebocyte, donor2_CNhs11951_11301-117B5_forward 1 2809 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor2_CNhs11951_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF954QGZ ENCSR374VQC Signal bigWig Right cardiac atrium tissue female adult 46 years DNase signal 2 2810 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/1f07b28b-7d8f-43f4-be29-c2de11419ae2/ENCFF954QGZ.bigWig\ color 6,218,147\ longLabel Right cardiac atrium tissue female adult 46 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR374VQC Signal\ track wgEncodeReg4Epigenetics_ENCFF954QGZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF933MBF ENCSR402XII Signal bigWig K562 CSDE1 ENCSR402XII signal 2 2810 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9bce2175-a618-4c94-89fe-d26026fd6c27/ENCFF933MBF.bigWig\ color 254,75,173\ longLabel K562 CSDE1 ENCSR402XII signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402XII Signal\ track wgEncodeReg4TfChip_ENCFF933MBF\ type bigWig\ visibility full\ SebocyteDonor2_CNhs11951_ctss_rev SebocyteD2- bigWig Sebocyte, donor2_CNhs11951_11301-117B5_reverse 0 2810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor2_CNhs11951_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ SebocyteDonor2_CNhs11951_tpm_rev SebocyteD2- bigWig Sebocyte, donor2_CNhs11951_11301-117B5_reverse 1 2810 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor2.CNhs11951.11301-117B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor2_CNhs11951_11301-117B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11301-117B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor2_CNhs11951_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11301-117B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF746TCR ENCSR375VXU Peak bigBed 5 Peyer's patch tissue female adult 53 years CTCF peak 4 2811 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/7303b6d5-ac6d-45ad-a95b-5eae5fa1dae3/ENCFF746TCR.bigBed\ color 0,176,240\ labelFields none\ longLabel Peyer's patch tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR375VXU Peak\ track wgEncodeReg4Epigenetics_ENCFF746TCR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF832LTU ENCSR402ZCY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF3 ATF3 peaks 4 2811 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/3067f128-fb79-4958-8280-0f9fdf109b07/ENCFF832LTU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF3 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402ZCY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF832LTU\ type bigBed 5\ useScore 1\ visibility squish\ SebocyteDonor3_CNhs11995_ctss_fwd SebocyteD3+ bigWig Sebocyte, donor3_CNhs11995_11378-118B1_forward 0 2811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor3_CNhs11995_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_tpm_fwd SebocyteD3+ bigWig Sebocyte, donor3_CNhs11995_11378-118B1_forward 1 2811 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SebocyteDonor3_CNhs11995_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF945PHV ENCSR375VXU Signal bigWig Peyer's patch tissue female adult 53 years CTCF signal 2 2812 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/0ee23308-5e1b-40d0-893f-3940e3cb73ba/ENCFF945PHV.bigWig\ color 0,176,240\ longLabel Peyer's patch tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR375VXU Signal\ track wgEncodeReg4Epigenetics_ENCFF945PHV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF795MFC ENCSR402ZCY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF3 ATF3 ENCSR402ZCY signal 2 2812 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/19db2ce8-bb8d-45f1-b8db-39e50221da8a/ENCFF795MFC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF3 ATF3 ENCSR402ZCY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR402ZCY Signal\ track wgEncodeReg4TfChip_ENCFF795MFC\ type bigWig\ visibility full\ SebocyteDonor3_CNhs11995_ctss_rev SebocyteD3- bigWig Sebocyte, donor3_CNhs11995_11378-118B1_reverse 0 2812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SebocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor3_CNhs11995_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ SebocyteDonor3_CNhs11995_tpm_rev SebocyteD3- bigWig Sebocyte, donor3_CNhs11995_11378-118B1_reverse 1 2812 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sebocyte%2c%20donor3.CNhs11995.11378-118B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sebocyte, donor3_CNhs11995_11378-118B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11378-118B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SebocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SebocyteDonor3_CNhs11995_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11378-118B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF571LEJ ENCSR376DAE Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 20 years DNase peak 4 2813 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/56c4ff4a-7bb1-4d4c-92ba-2194ba80972a/ENCFF571LEJ.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell male adult 20 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR376DAE Peak\ track wgEncodeReg4Epigenetics_ENCFF571LEJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF585QNU ENCSR403MJY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 peaks 4 2813 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/87efe968-4cdd-4638-bd16-9dc9f4eac4da/ENCFF585QNU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR403MJY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF585QNU\ type bigBed 5\ useScore 1\ visibility squish\ SertoliCellsDonor1_CNhs10851_ctss_fwd SertoliCellsD1+ bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_forward 0 2813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor1_CNhs10851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_tpm_fwd SertoliCellsD1+ bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_forward 1 2813 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor1_CNhs10851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF753JMD ENCSR376DAE Signal bigWig CD4-positive, alpha-beta T cell male adult 20 years DNase signal 2 2814 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/fdeaa9f9-de5f-42af-ad9b-1d152d2e88ed/ENCFF753JMD.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell male adult 20 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR376DAE Signal\ track wgEncodeReg4Epigenetics_ENCFF753JMD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF183LVZ ENCSR403MJY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 ENCSR403MJY signal 2 2814 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/62862f16-55fd-41a8-acd9-f79730fb764a/ENCFF183LVZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 ZNF281 ENCSR403MJY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR403MJY Signal\ track wgEncodeReg4TfChip_ENCFF183LVZ\ type bigWig\ visibility full\ SertoliCellsDonor1_CNhs10851_ctss_rev SertoliCellsD1- bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse 0 2814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor1_CNhs10851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ SertoliCellsDonor1_CNhs10851_tpm_rev SertoliCellsD1- bigWig Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse 1 2814 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor1.CNhs10851.11255-116F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor1_CNhs10851_11255-116F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11255-116F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor1_CNhs10851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11255-116F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF725NNJ ENCSR376EOW Peak bigBed 5 Heart right ventricle tissue male adult 66 years CTCF peak 4 2815 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/12f6a44f-5f94-40dd-b465-eb484671161d/ENCFF725NNJ.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart right ventricle tissue male adult 66 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR376EOW Peak\ track wgEncodeReg4Epigenetics_ENCFF725NNJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF101ILL ENCSR403USE Peak bigBed 5 Sigmoid colon tissue female adult (53 years) POLR2AphosphoS5 peaks 4 2815 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/5e84eb23-3939-4b1d-9402-4885305e4d23/ENCFF101ILL.bigBed\ labelFields none\ longLabel Sigmoid colon tissue female adult (53 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR403USE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF101ILL\ type bigBed 5\ useScore 1\ visibility squish\ SertoliCellsDonor2_CNhs11974_ctss_fwd SertoliCellsD2+ bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_forward 0 2815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor2_CNhs11974_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ SertoliCellsDonor2_CNhs11974_tpm_fwd SertoliCellsD2+ bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_forward 1 2815 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SertoliCellsDonor2_CNhs11974_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF430LIA ENCSR376EOW Signal bigWig Heart right ventricle tissue male adult 66 years CTCF signal 2 2816 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/fef9e9e8-f312-4d17-82b6-984f0cd07710/ENCFF430LIA.bigWig\ color 0,176,240\ longLabel Heart right ventricle tissue male adult 66 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR376EOW Signal\ track wgEncodeReg4Epigenetics_ENCFF430LIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF686LQI ENCSR403USE Signal bigWig Sigmoid colon tissue female adult (53 years) POLR2AphosphoS5 ENCSR403USE signal 2 2816 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/ce760a83-ac24-4fce-98ac-119f6ca09064/ENCFF686LQI.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (53 years) POLR2AphosphoS5 ENCSR403USE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR403USE Signal\ track wgEncodeReg4TfChip_ENCFF686LQI\ type bigWig\ visibility full\ SertoliCellsDonor2_CNhs11974_ctss_rev SertoliCellsD2- bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse 0 2816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SertoliCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor2_CNhs11974_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ SertoliCellsDonor2_CNhs11974_tpm_rev SertoliCellsD2- bigWig Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse 1 2816 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Sertoli%20Cells%2c%20donor2.CNhs11974.11333-117F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Sertoli Cells, donor2_CNhs11974_11333-117F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11333-117F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SertoliCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SertoliCellsDonor2_CNhs11974_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11333-117F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF790YUH ENCSR376YMU Peak bigBed 5 HG03439 ATAC peak 4 2817 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/4cc46e9c-bb49-4352-89a2-30936ebfd6da/ENCFF790YUH.bigBed\ color 2,199,185\ longLabel HG03439 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR376YMU Peak\ track wgEncodeReg4Epigenetics_ENCFF790YUH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF795YGY ENCSR404BPV Peak bigBed 5 Neural cell originated from H1 SMC3 peaks 4 2817 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d6525e8c-d1d1-4de6-8fac-310dcb441bb1/ENCFF795YGY.bigBed\ labelFields none\ longLabel Neural cell originated from H1 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR404BPV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF795YGY\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDonor1_CNhs11083_ctss_fwd SkeletalMuscleCellsD1+ bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward 0 2817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor1_CNhs11083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor1_CNhs11083_tpm_fwd SkeletalMuscleCellsD1+ bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward 1 2817 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor1_CNhs11083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF120TUR ENCSR376YMU Signal bigWig HG03439 ATAC signal 2 2818 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/bb8c3dfc-35b6-4920-9368-1046f5f89c64/ENCFF120TUR.bigWig\ color 2,199,185\ longLabel HG03439 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR376YMU Signal\ track wgEncodeReg4Epigenetics_ENCFF120TUR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF536OEA ENCSR404BPV Signal bigWig Neural cell originated from H1 SMC3 ENCSR404BPV signal 2 2818 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/7f673f84-e49d-4d3b-be74-ad776ff24ea4/ENCFF536OEA.bigWig\ color 155,155,18\ longLabel Neural cell originated from H1 SMC3 ENCSR404BPV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR404BPV Signal\ track wgEncodeReg4TfChip_ENCFF536OEA\ type bigWig\ visibility full\ SkeletalMuscleCellsDonor1_CNhs11083_ctss_rev SkeletalMuscleCellsD1- bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse 0 2818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor1_CNhs11083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor1_CNhs11083_tpm_rev SkeletalMuscleCellsD1- bigWig Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse 1 2818 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor1.CNhs11083.11281-116I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor1_CNhs11083_11281-116I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11281-116I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor1_CNhs11083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11281-116I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF070MFL ENCSR377CRU Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours DNase peak 4 2819 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/f32b7bea-6ed7-4c5e-adb5-656cca9f7f3b/ENCFF070MFL.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR377CRU Peak\ track wgEncodeReg4Epigenetics_ENCFF070MFL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF881OMH ENCSR404VWY Peak bigBed 5 Prostate gland tissue male adult (37 years) POLR2AphosphoS5 peaks 4 2819 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f5a82ee6-5c80-42ac-b132-78b2d2aa2264/ENCFF881OMH.bigBed\ labelFields none\ longLabel Prostate gland tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR404VWY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF881OMH\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDonor2_CNhs11983_ctss_fwd SkeletalMuscleCellsD2+ bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward 0 2819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor2_CNhs11983_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor2_CNhs11983_tpm_fwd SkeletalMuscleCellsD2+ bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward 1 2819 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor2_CNhs11983_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF512INR ENCSR377CRU Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours DNase signal 2 2820 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/f663374d-11ea-49d6-8529-a88fad24180d/ENCFF512INR.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR377CRU Signal\ track wgEncodeReg4Epigenetics_ENCFF512INR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF678MXF ENCSR404VWY Signal bigWig Prostate gland tissue male adult (37 years) POLR2AphosphoS5 ENCSR404VWY signal 2 2820 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/1528e268-da45-49c9-9de2-031bb95abe84/ENCFF678MXF.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (37 years) POLR2AphosphoS5 ENCSR404VWY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR404VWY Signal\ track wgEncodeReg4TfChip_ENCFF678MXF\ type bigWig\ visibility full\ SkeletalMuscleCellsDonor2_CNhs11983_ctss_rev SkeletalMuscleCellsD2- bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_reverse 0 2820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor2_CNhs11983_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor2_CNhs11983_tpm_rev SkeletalMuscleCellsD2- bigWig Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_reverse 1 2820 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor2.CNhs11983.11358-117H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor2_CNhs11983_11358-117H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11358-117H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor2_CNhs11983_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11358-117H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF690JBP ENCSR377ILM Peak bigBed 5 Spleen tissue male adult 54 years H3K4me3 peak 4 2821 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/32fd9bb5-962f-4f1e-ab16-ed99c14956ec/ENCFF690JBP.bigBed\ color 255,0,0\ longLabel Spleen tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR377ILM Peak\ track wgEncodeReg4Epigenetics_ENCFF690JBP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF878CNQ ENCSR407BEZ Peak bigBed 5 HepG2 ZHX2 peaks 4 2821 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/679bae70-387e-48dd-9573-840f2b483253/ENCFF878CNQ.bigBed\ labelFields none\ longLabel HepG2 ZHX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR407BEZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF878CNQ\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDonor3_CNhs12040_ctss_fwd SkeletalMuscleCellsD3+ bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward 0 2821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor3.CNhs12040.11430-118G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11430-118G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor3_CNhs12040_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor3_CNhs12040_tpm_fwd SkeletalMuscleCellsD3+ bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward 1 2821 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor3.CNhs12040.11430-118G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11430-118G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor3_CNhs12040_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF187WMV ENCSR377ILM Signal bigWig Spleen tissue male adult 54 years H3K4me3 signal 2 2822 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/b0cf3cc7-e360-4b5b-9b5a-79002e9b28b9/ENCFF187WMV.bigWig\ color 255,0,0\ longLabel Spleen tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR377ILM Signal\ track wgEncodeReg4Epigenetics_ENCFF187WMV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF931PNP ENCSR407BEZ Signal bigWig HepG2 ZHX2 ENCSR407BEZ signal 2 2822 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/52b88b25-b66a-4031-8e52-12136ec58fce/ENCFF931PNP.bigWig\ color 137,152,82\ longLabel HepG2 ZHX2 ENCSR407BEZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR407BEZ Signal\ track wgEncodeReg4TfChip_ENCFF931PNP\ type bigWig\ visibility full\ SkeletalMuscleCellsDonor3_CNhs12040_ctss_rev SkeletalMuscleCellsD3- bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_reverse 0 2822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor3.CNhs12040.11430-118G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11430-118G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor3_CNhs12040_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor3_CNhs12040_tpm_rev SkeletalMuscleCellsD3- bigWig Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_reverse 1 2822 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor3.CNhs12040.11430-118G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor3_CNhs12040_11430-118G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11430-118G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor3_CNhs12040_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11430-118G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF321MCE ENCSR377KDN Peak bigBed 5 Heart left ventricle tissue male child 3 years H3K4me3 peak 4 2823 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/c479f182-3fd3-4390-aa28-e0c574334b33/ENCFF321MCE.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue male child 3 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR377KDN Peak\ track wgEncodeReg4Epigenetics_ENCFF321MCE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF900FRP ENCSR407BPU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609 ZNF609 peaks 4 2823 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/1c0b0ff0-4565-48a8-b6b3-cbeafa69d8d5/ENCFF900FRP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609 ZNF609 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR407BPU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF900FRP\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDonor4_CNhs12053_ctss_fwd SkeletalMuscleCellsD4+ bigWig Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_forward 0 2823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor4.CNhs12053.11451-119A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11451-119A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor4_CNhs12053_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor4_CNhs12053_tpm_fwd SkeletalMuscleCellsD4+ bigWig Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_forward 1 2823 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor4.CNhs12053.11451-119A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11451-119A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor4_CNhs12053_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF190UNW ENCSR377KDN Signal bigWig Heart left ventricle tissue male child 3 years H3K4me3 signal 2 2824 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b120b5c9-a19c-427e-988d-69abd5f45c60/ENCFF190UNW.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue male child 3 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR377KDN Signal\ track wgEncodeReg4Epigenetics_ENCFF190UNW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF594WXP ENCSR407BPU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609 ZNF609 ENCSR407BPU signal 2 2824 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/7c68d302-adda-4488-8c1d-0eb81fe188d8/ENCFF594WXP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF609 ZNF609 ENCSR407BPU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR407BPU Signal\ track wgEncodeReg4TfChip_ENCFF594WXP\ type bigWig\ visibility full\ SkeletalMuscleCellsDonor4_CNhs12053_ctss_rev SkeletalMuscleCellsD4- bigWig Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_reverse 0 2824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor4.CNhs12053.11451-119A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11451-119A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor4_CNhs12053_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor4_CNhs12053_tpm_rev SkeletalMuscleCellsD4- bigWig Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_reverse 1 2824 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor4.CNhs12053.11451-119A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor4_CNhs12053_11451-119A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11451-119A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor4_CNhs12053_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11451-119A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF696ASB ENCSR378BVM Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF peak 4 2825 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/3b937a90-e3ec-42e0-bc24-d945bfdcbb41/ENCFF696ASB.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR378BVM Peak\ track wgEncodeReg4Epigenetics_ENCFF696ASB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF475ZIG ENCSR408JQO Peak bigBed 5 GM12878 IRF3 peaks 4 2825 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c07672a5-287c-4997-88d7-77c9801fb94e/ENCFF475ZIG.bigBed\ labelFields none\ longLabel GM12878 IRF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR408JQO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF475ZIG\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDonor5_CNhs12056_ctss_fwd SkeletalMuscleCellsD5+ bigWig Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_forward 0 2825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor5.CNhs12056.11455-119A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11455-119A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor5_CNhs12056_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor5_CNhs12056_tpm_fwd SkeletalMuscleCellsD5+ bigWig Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_forward 1 2825 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor5.CNhs12056.11455-119A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11455-119A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor5_CNhs12056_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF888DOQ ENCSR378BVM Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF signal 2 2826 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/ff11ec67-dccb-44fd-912e-e6ffbe3e87d9/ENCFF888DOQ.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 87 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR378BVM Signal\ track wgEncodeReg4Epigenetics_ENCFF888DOQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF355PER ENCSR408JQO Signal bigWig GM12878 IRF3 ENCSR408JQO signal 2 2826 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6b9c25fd-4dd9-491b-b6a6-119e819eae12/ENCFF355PER.bigWig\ color 254,75,173\ longLabel GM12878 IRF3 ENCSR408JQO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR408JQO Signal\ track wgEncodeReg4TfChip_ENCFF355PER\ type bigWig\ visibility full\ SkeletalMuscleCellsDonor5_CNhs12056_ctss_rev SkeletalMuscleCellsD5- bigWig Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_reverse 0 2826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor5.CNhs12056.11455-119A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11455-119A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor5_CNhs12056_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor5_CNhs12056_tpm_rev SkeletalMuscleCellsD5- bigWig Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_reverse 1 2826 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor5.CNhs12056.11455-119A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor5_CNhs12056_11455-119A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11455-119A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor5_CNhs12056_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11455-119A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF188BNI ENCSR378EPS Peak bigBed 5 Multiple sclerosis CD14-positive monocyte H3K27ac peak 4 2827 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/6fe33af2-867e-48cd-95ef-5b7d1d578aea/ENCFF188BNI.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD14-positive monocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR378EPS Peak\ track wgEncodeReg4Epigenetics_ENCFF188BNI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF875SAZ ENCSR408XTO Peak bigBed 5 Body of pancreas tissue female adult (51 years) CTCF peaks 4 2827 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/08/11/22213350-3e90-4d88-b9a2-f2506dff0ca5/ENCFF875SAZ.bigBed\ labelFields none\ longLabel Body of pancreas tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR408XTO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF875SAZ\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDonor6_CNhs12060_ctss_fwd SkeletalMuscleCellsD6+ bigWig Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward 0 2827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor6.CNhs12060.11459-119B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11459-119B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor6_CNhs12060_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor6_CNhs12060_tpm_fwd SkeletalMuscleCellsD6+ bigWig Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward 1 2827 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor6.CNhs12060.11459-119B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11459-119B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDonor6_CNhs12060_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF091GNW ENCSR378EPS Signal bigWig Multiple sclerosis CD14-positive monocyte H3K27ac signal 2 2828 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/bd3083a0-b8ea-48e7-a716-907591b2c91b/ENCFF091GNW.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD14-positive monocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR378EPS Signal\ track wgEncodeReg4Epigenetics_ENCFF091GNW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF893BCC ENCSR408XTO Signal bigWig Body of pancreas tissue female adult (51 years) CTCF ENCSR408XTO signal 2 2828 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2d98af56-c6d8-4244-bbce-1484f55add6f/ENCFF893BCC.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (51 years) CTCF ENCSR408XTO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR408XTO Signal\ track wgEncodeReg4TfChip_ENCFF893BCC\ type bigWig\ visibility full\ SkeletalMuscleCellsDonor6_CNhs12060_ctss_rev SkeletalMuscleCellsD6- bigWig Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_reverse 0 2828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor6.CNhs12060.11459-119B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11459-119B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor6_CNhs12060_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDonor6_CNhs12060_tpm_rev SkeletalMuscleCellsD6- bigWig Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_reverse 1 2828 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Cells%2c%20donor6.CNhs12060.11459-119B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Cells, donor6_CNhs12060_11459-119B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11459-119B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDonor6_CNhs12060_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11459-119B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF041CKA ENCSR378KET Peak bigBed 5 Middle frontal area 46 tissue male adult 83 years CTCF peak 4 2829 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/1cd8d45b-3e54-432e-be30-19cda02e6569/ENCFF041CKA.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 83 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR378KET Peak\ track wgEncodeReg4Epigenetics_ENCFF041CKA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF723HUU ENCSR408ZEE Peak bigBed 5 Adrenal gland tissue female adult (51 years) CTCF peaks 4 2829 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/df850b5b-6602-40ca-8be3-4b97993779d0/ENCFF723HUU.bigBed\ labelFields none\ longLabel Adrenal gland tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR408ZEE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF723HUU\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_ctss_fwd SkeletalMuscleCellsIntoMyotubesD1+ bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_forward 0 2829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor1.CNhs11084.11282-116I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11282-116I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsIntoMyotubesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_tpm_fwd SkeletalMuscleCellsIntoMyotubesD1+ bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_forward 1 2829 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor1.CNhs11084.11282-116I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11282-116I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsIntoMyotubesD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF394BNS ENCSR378KET Signal bigWig Middle frontal area 46 tissue male adult 83 years CTCF signal 2 2830 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/db3a2241-ce61-402a-8fcd-e74922497e02/ENCFF394BNS.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue male adult 83 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR378KET Signal\ track wgEncodeReg4Epigenetics_ENCFF394BNS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF846NEP ENCSR408ZEE Signal bigWig Adrenal gland tissue female adult (51 years) CTCF ENCSR408ZEE signal 2 2830 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/a21a781f-1323-4549-a3dc-58345526a8d1/ENCFF846NEP.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (51 years) CTCF ENCSR408ZEE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR408ZEE Signal\ track wgEncodeReg4TfChip_ENCFF846NEP\ type bigWig\ visibility full\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_ctss_rev SkeletalMuscleCellsIntoMyotubesD1- bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_reverse 0 2830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor1.CNhs11084.11282-116I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11282-116I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsIntoMyotubesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_tpm_rev SkeletalMuscleCellsIntoMyotubesD1- bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_reverse 1 2830 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor1.CNhs11084.11282-116I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1_CNhs11084_11282-116I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11282-116I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsIntoMyotubesD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor1_CNhs11084_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11282-116I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF936JXA ENCSR379DNM Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 2831 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/81a85e19-ce3d-41da-a192-10f7010ed0ae/ENCFF936JXA.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR379DNM Peak\ track wgEncodeReg4Epigenetics_ENCFF936JXA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF157CDZ ENCSR409PMR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED4 ZBED4 peaks 4 2831 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/cf65a10c-9bdb-4169-b963-72edce472964/ENCFF157CDZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED4 ZBED4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR409PMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF157CDZ\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_ctss_fwd SkeletalMuscleCellsIntoMyotubesD2+ bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_forward 0 2831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor2.CNhs11984.11359-117H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11359-117H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsIntoMyotubesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_tpm_fwd SkeletalMuscleCellsIntoMyotubesD2+ bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_forward 1 2831 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor2.CNhs11984.11359-117H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11359-117H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsIntoMyotubesD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF280YLT ENCSR379DNM Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 2832 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/9d3b24a8-4925-49e9-8087-021228c7c7e1/ENCFF280YLT.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR379DNM Signal\ track wgEncodeReg4Epigenetics_ENCFF280YLT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF323OOF ENCSR409PMR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED4 ZBED4 ENCSR409PMR signal 2 2832 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b5d33011-c92c-4c36-b37c-00e02ea37654/ENCFF323OOF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED4 ZBED4 ENCSR409PMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR409PMR Signal\ track wgEncodeReg4TfChip_ENCFF323OOF\ type bigWig\ visibility full\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_ctss_rev SkeletalMuscleCellsIntoMyotubesD2- bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_reverse 0 2832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor2.CNhs11984.11359-117H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11359-117H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsIntoMyotubesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_tpm_rev SkeletalMuscleCellsIntoMyotubesD2- bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_reverse 1 2832 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor2.CNhs11984.11359-117H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor2_CNhs11984_11359-117H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11359-117H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsIntoMyotubesD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor2_CNhs11984_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11359-117H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF107XEN ENCSR379NMT Peak bigBed 5 Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC peak 4 2833 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/9e4dc7e5-5c76-44d8-bb44-fcb2792528ee/ENCFF107XEN.bigBed\ color 2,199,185\ longLabel Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR379NMT Peak\ track wgEncodeReg4Epigenetics_ENCFF107XEN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF458IIA ENCSR410DWC Peak bigBed 5 K562 stably expressing PYGO2 PYGO2 peaks 4 2833 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d52de82e-6e92-40f1-ae7a-d41aaffcc21c/ENCFF458IIA.bigBed\ labelFields none\ longLabel K562 stably expressing PYGO2 PYGO2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR410DWC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF458IIA\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_ctss_fwd SkeletalMuscleCellsIntoMyotubesD3+ bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_forward 0 2833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor3.CNhs12041.11431-118G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11431-118G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsIntoMyotubesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_tpm_fwd SkeletalMuscleCellsIntoMyotubesD3+ bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_forward 1 2833 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor3.CNhs12041.11431-118G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11431-118G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsIntoMyotubesD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF934HGD ENCSR379NMT Signal bigWig Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC signal 2 2834 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/b5cd8c18-57c6-4f03-ba61-e95e4343ed94/ENCFF934HGD.bigWig\ color 2,199,185\ longLabel Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR379NMT Signal\ track wgEncodeReg4Epigenetics_ENCFF934HGD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF892HGA ENCSR410DWC Signal bigWig K562 stably expressing PYGO2 PYGO2 ENCSR410DWC signal 2 2834 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c5985ff9-e93a-4ff0-a852-ca7a3e198315/ENCFF892HGA.bigWig\ color 254,75,173\ longLabel K562 stably expressing PYGO2 PYGO2 ENCSR410DWC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR410DWC Signal\ track wgEncodeReg4TfChip_ENCFF892HGA\ type bigWig\ visibility full\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_ctss_rev SkeletalMuscleCellsIntoMyotubesD3- bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_reverse 0 2834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor3.CNhs12041.11431-118G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11431-118G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleCellsIntoMyotubesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9\ urlLabel FANTOM5 Details:\ SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_tpm_rev SkeletalMuscleCellsIntoMyotubesD3- bigWig Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_reverse 1 2834 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor3.CNhs12041.11431-118G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal muscle cells differentiated into Myotubes - multinucleated, donor3_CNhs12041_11431-118G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11431-118G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleCellsIntoMyotubesD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleCellsDifferentiatedIntoMyotubesMultinucleatedDonor3_CNhs12041_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11431-118G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF768LFO ENCSR379WXM Peak bigBed 5 Neurosphere embryo 15 weeks originated from ganglionic eminence H3K27ac peak 4 2835 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/536eff96-877f-4584-87fe-b89101bb785d/ENCFF768LFO.bigBed\ color 181,145,0\ longLabel Neurosphere embryo 15 weeks originated from ganglionic eminence H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR379WXM Peak\ track wgEncodeReg4Epigenetics_ENCFF768LFO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF811TLA ENCSR410FEH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBX2 TBX2 peaks 4 2835 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/161ff43d-facc-433d-a880-b6a4c916cb04/ENCFF811TLA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBX2 TBX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR410FEH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF811TLA\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleSatelliteCellsDonor1_CNhs10869_ctss_fwd SkeletalMuscleSatelliteCellsD1+ bigWig Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_forward 0 2835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor1.CNhs10869.11240-116D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11240-116D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSatelliteCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleSatelliteCellsDonor1_CNhs10869_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7\ urlLabel FANTOM5 Details:\ SkeletalMuscleSatelliteCellsDonor1_CNhs10869_tpm_fwd SkeletalMuscleSatelliteCellsD1+ bigWig Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_forward 1 2835 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor1.CNhs10869.11240-116D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11240-116D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSatelliteCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleSatelliteCellsDonor1_CNhs10869_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF177VFG ENCSR379WXM Signal bigWig Neurosphere embryo 15 weeks originated from ganglionic eminence H3K27ac signal 2 2836 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d481b9c9-e42d-44e0-a2fa-618280212085/ENCFF177VFG.bigWig\ color 181,145,0\ longLabel Neurosphere embryo 15 weeks originated from ganglionic eminence H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR379WXM Signal\ track wgEncodeReg4Epigenetics_ENCFF177VFG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF225OTG ENCSR410FEH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBX2 TBX2 ENCSR410FEH signal 2 2836 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/9bcc6a66-5228-4dc7-b28c-c9ede172f978/ENCFF225OTG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBX2 TBX2 ENCSR410FEH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR410FEH Signal\ track wgEncodeReg4TfChip_ENCFF225OTG\ type bigWig\ visibility full\ SkeletalMuscleSatelliteCellsDonor1_CNhs10869_ctss_rev SkeletalMuscleSatelliteCellsD1- bigWig Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_reverse 0 2836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor1.CNhs10869.11240-116D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11240-116D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSatelliteCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleSatelliteCellsDonor1_CNhs10869_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7\ urlLabel FANTOM5 Details:\ SkeletalMuscleSatelliteCellsDonor1_CNhs10869_tpm_rev SkeletalMuscleSatelliteCellsD1- bigWig Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_reverse 1 2836 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor1.CNhs10869.11240-116D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Satellite Cells, donor1_CNhs10869_11240-116D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11240-116D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSatelliteCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleSatelliteCellsDonor1_CNhs10869_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11240-116D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF088YOL ENCSR380KOO Peak bigBed 5 Angular gyrus tissue male adult 81 years H3K27ac peak 4 2837 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/43ab3e7c-a179-4205-8b6c-dfaabccdfc9d/ENCFF088YOL.bigBed\ color 181,145,0\ longLabel Angular gyrus tissue male adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR380KOO Peak\ track wgEncodeReg4Epigenetics_ENCFF088YOL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF441KCP ENCSR411UYA Peak bigBed 5 K562 MTA2 peaks 4 2837 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/d1346c99-73e0-4296-8b56-1a537dddf745/ENCFF441KCP.bigBed\ labelFields none\ longLabel K562 MTA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR411UYA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF441KCP\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleSatelliteCellsDonor2_CNhs11964_ctss_fwd SkeletalMuscleSatelliteCellsD2+ bigWig Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_forward 0 2837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor2.CNhs11964.11321-117D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11321-117D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSatelliteCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleSatelliteCellsDonor2_CNhs11964_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7\ urlLabel FANTOM5 Details:\ SkeletalMuscleSatelliteCellsDonor2_CNhs11964_tpm_fwd SkeletalMuscleSatelliteCellsD2+ bigWig Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_forward 1 2837 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor2.CNhs11964.11321-117D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11321-117D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSatelliteCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleSatelliteCellsDonor2_CNhs11964_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF721FMJ ENCSR380KOO Signal bigWig Angular gyrus tissue male adult 81 years H3K27ac signal 2 2838 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c2773190-7557-4d57-b786-c22572ee0bc9/ENCFF721FMJ.bigWig\ color 181,145,0\ longLabel Angular gyrus tissue male adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR380KOO Signal\ track wgEncodeReg4Epigenetics_ENCFF721FMJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF687OPZ ENCSR411UYA Signal bigWig K562 MTA2 ENCSR411UYA signal 2 2838 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/d573ec36-ced2-4648-b23e-533d5e29b03b/ENCFF687OPZ.bigWig\ color 254,75,173\ longLabel K562 MTA2 ENCSR411UYA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR411UYA Signal\ track wgEncodeReg4TfChip_ENCFF687OPZ\ type bigWig\ visibility full\ SkeletalMuscleSatelliteCellsDonor2_CNhs11964_ctss_rev SkeletalMuscleSatelliteCellsD2- bigWig Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_reverse 0 2838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor2.CNhs11964.11321-117D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11321-117D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSatelliteCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleSatelliteCellsDonor2_CNhs11964_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7\ urlLabel FANTOM5 Details:\ SkeletalMuscleSatelliteCellsDonor2_CNhs11964_tpm_rev SkeletalMuscleSatelliteCellsD2- bigWig Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_reverse 1 2838 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor2.CNhs11964.11321-117D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Satellite Cells, donor2_CNhs11964_11321-117D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11321-117D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSatelliteCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleSatelliteCellsDonor2_CNhs11964_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11321-117D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF796JNW ENCSR380TXB Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase peak 4 2839 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/c83887cd-cf78-4ea0-bc92-6d75d355177f/ENCFF796JNW.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR380TXB Peak\ track wgEncodeReg4Epigenetics_ENCFF796JNW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF944TWT ENCSR412CTM Peak bigBed 5 K562 SUZ12 peaks 4 2839 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/84965def-fdd8-4e60-8a29-c9c8035ad6ed/ENCFF944TWT.bigBed\ labelFields none\ longLabel K562 SUZ12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412CTM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF944TWT\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleSatelliteCellsDonor3_CNhs12008_ctss_fwd SkeletalMuscleSatelliteCellsD3+ bigWig Skeletal Muscle Satellite Cells, donor3_CNhs12008_11397-118D2_forward 0 2839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11397-118D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor3.CNhs12008.11397-118D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Satellite Cells, donor3_CNhs12008_11397-118D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11397-118D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSatelliteCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleSatelliteCellsDonor3_CNhs12008_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11397-118D2\ urlLabel FANTOM5 Details:\ SkeletalMuscleSatelliteCellsDonor3_CNhs12008_tpm_fwd SkeletalMuscleSatelliteCellsD3+ bigWig Skeletal Muscle Satellite Cells, donor3_CNhs12008_11397-118D2_forward 1 2839 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11397-118D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor3.CNhs12008.11397-118D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skeletal Muscle Satellite Cells, donor3_CNhs12008_11397-118D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11397-118D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSatelliteCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SkeletalMuscleSatelliteCellsDonor3_CNhs12008_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11397-118D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF990VDF ENCSR380TXB Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase signal 2 2840 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/39b06c8e-1a05-4fd4-8218-b75e419cb8f5/ENCFF990VDF.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR380TXB Signal\ track wgEncodeReg4Epigenetics_ENCFF990VDF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF219FGQ ENCSR412CTM Signal bigWig K562 SUZ12 ENCSR412CTM signal 2 2840 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl 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category=primaryCell strand=reverse\ track SkeletalMuscleSatelliteCellsDonor3_CNhs12008_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11397-118D2\ urlLabel FANTOM5 Details:\ SkeletalMuscleSatelliteCellsDonor3_CNhs12008_tpm_rev SkeletalMuscleSatelliteCellsD3- bigWig Skeletal Muscle Satellite Cells, donor3_CNhs12008_11397-118D2_reverse 1 2840 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11397-118D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skeletal%20Muscle%20Satellite%20Cells%2c%20donor3.CNhs12008.11397-118D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skeletal Muscle Satellite Cells, donor3_CNhs12008_11397-118D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11397-118D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSatelliteCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SkeletalMuscleSatelliteCellsDonor3_CNhs12008_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11397-118D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF319RUN ENCSR380WJL Peak bigBed 5 Colonic mucosa tissue female adult 41 years CTCF peak 4 2841 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6b0fe999-7f7c-4d2b-bbef-f9efe9d34ee6/ENCFF319RUN.bigBed\ color 0,176,240\ labelFields none\ longLabel Colonic mucosa tissue female adult 41 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR380WJL Peak\ track wgEncodeReg4Epigenetics_ENCFF319RUN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF866POT ENCSR412QBS Peak bigBed 5 GM12878 TARDBP peaks 4 2841 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d87134da-4f6d-4675-b962-5a68dff1b8b8/ENCFF866POT.bigBed\ labelFields none\ longLabel GM12878 TARDBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412QBS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF866POT\ type bigBed 5\ useScore 1\ visibility squish\ SmallAirwayEpithelialCellsDonor1_CNhs10884_ctss_fwd SmallAirwayEpithelialCellsD1+ bigWig Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_forward 0 2841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor1.CNhs10884.11256-116F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11256-116F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmallAirwayEpithelialCellsDonor1_CNhs10884_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor1_CNhs10884_tpm_fwd SmallAirwayEpithelialCellsD1+ bigWig Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_forward 1 2841 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor1.CNhs10884.11256-116F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11256-116F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmallAirwayEpithelialCellsDonor1_CNhs10884_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF546ZNQ ENCSR380WJL Signal bigWig Colonic mucosa tissue female adult 41 years CTCF signal 2 2842 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/f1eab703-67fb-498c-832b-346f36fb71fb/ENCFF546ZNQ.bigWig\ color 0,176,240\ longLabel Colonic mucosa tissue female adult 41 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR380WJL Signal\ track wgEncodeReg4Epigenetics_ENCFF546ZNQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF531XDV ENCSR412QBS Signal bigWig GM12878 TARDBP ENCSR412QBS signal 2 2842 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/703c26d4-74fe-4051-8a52-df7e80f4ea05/ENCFF531XDV.bigWig\ color 254,75,173\ longLabel GM12878 TARDBP ENCSR412QBS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412QBS Signal\ track wgEncodeReg4TfChip_ENCFF531XDV\ type bigWig\ visibility full\ SmallAirwayEpithelialCellsDonor1_CNhs10884_ctss_rev SmallAirwayEpithelialCellsD1- bigWig Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_reverse 0 2842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor1.CNhs10884.11256-116F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11256-116F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmallAirwayEpithelialCellsDonor1_CNhs10884_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor1_CNhs10884_tpm_rev SmallAirwayEpithelialCellsD1- bigWig Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_reverse 1 2842 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor1.CNhs10884.11256-116F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells, donor1_CNhs10884_11256-116F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11256-116F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmallAirwayEpithelialCellsDonor1_CNhs10884_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11256-116F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF113TCR ENCSR381LJX Peak bigBed 5 HG03039 ATAC peak 4 2843 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/393952c9-72ae-4571-acd9-08e1fc7da679/ENCFF113TCR.bigBed\ color 2,199,185\ longLabel HG03039 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR381LJX Peak\ track wgEncodeReg4Epigenetics_ENCFF113TCR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF843OBJ ENCSR412QGD Peak bigBed 5 Adrenal gland tissue female adult (51 years) POLR2A peaks 4 2843 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/adc5fbae-21dc-4473-a5b9-dd124f62091f/ENCFF843OBJ.bigBed\ labelFields none\ longLabel Adrenal gland tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412QGD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF843OBJ\ type bigBed 5\ useScore 1\ visibility squish\ SmallAirwayEpithelialCellsDonor2_CNhs11975_ctss_fwd SmallAirwayEpithelialCellsD2+ bigWig Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_forward 0 2843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor2.CNhs11975.11334-117F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11334-117F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmallAirwayEpithelialCellsDonor2_CNhs11975_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor2_CNhs11975_tpm_fwd SmallAirwayEpithelialCellsD2+ bigWig Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_forward 1 2843 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor2.CNhs11975.11334-117F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11334-117F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmallAirwayEpithelialCellsDonor2_CNhs11975_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF690ERQ ENCSR381LJX Signal bigWig HG03039 ATAC signal 2 2844 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/eebc29ae-d390-4c27-a478-31e9e33e374f/ENCFF690ERQ.bigWig\ color 2,199,185\ longLabel HG03039 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR381LJX Signal\ track wgEncodeReg4Epigenetics_ENCFF690ERQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF498VGK ENCSR412QGD Signal bigWig Adrenal gland tissue female adult (51 years) POLR2A ENCSR412QGD signal 2 2844 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/83abc5cf-ee14-4811-95ca-0ca3ce08c565/ENCFF498VGK.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (51 years) POLR2A ENCSR412QGD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412QGD Signal\ track wgEncodeReg4TfChip_ENCFF498VGK\ type bigWig\ visibility full\ SmallAirwayEpithelialCellsDonor2_CNhs11975_ctss_rev SmallAirwayEpithelialCellsD2- bigWig Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_reverse 0 2844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor2.CNhs11975.11334-117F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11334-117F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmallAirwayEpithelialCellsDonor2_CNhs11975_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor2_CNhs11975_tpm_rev SmallAirwayEpithelialCellsD2- bigWig Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_reverse 1 2844 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor2.CNhs11975.11334-117F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells, donor2_CNhs11975_11334-117F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11334-117F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmallAirwayEpithelialCellsDonor2_CNhs11975_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11334-117F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF079OIA ENCSR381PXW Peak bigBed 5 B cell male adult 21 years DNase peak 4 2845 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/36e4ca9b-44ae-4cd6-9e9f-5fd6887edd09/ENCFF079OIA.bigBed\ color 6,218,147\ labelFields none\ longLabel B cell male adult 21 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR381PXW Peak\ track wgEncodeReg4Epigenetics_ENCFF079OIA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF983OKU ENCSR412YGM Peak bigBed 5 GM12878 ZSCAN29 peaks 4 2845 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/b94835d5-bd73-4fc9-a30f-7dbbeebe1af8/ENCFF983OKU.bigBed\ labelFields none\ longLabel GM12878 ZSCAN29 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412YGM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF983OKU\ type bigBed 5\ useScore 1\ visibility squish\ SmallAirwayEpithelialCellsDonor3_CNhs12016_ctss_fwd SmallAirwayEpithelialCellsD3+ bigWig Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_forward 0 2845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor3.CNhs12016.11406-118E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11406-118E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmallAirwayEpithelialCellsDonor3_CNhs12016_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor3_CNhs12016_tpm_fwd SmallAirwayEpithelialCellsD3+ bigWig Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_forward 1 2845 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor3.CNhs12016.11406-118E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11406-118E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmallAirwayEpithelialCellsDonor3_CNhs12016_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF134KAD ENCSR381PXW Signal bigWig B cell male adult 21 years DNase signal 2 2846 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/7b8f4b37-1480-4a08-90f6-a4e17e7e4aea/ENCFF134KAD.bigWig\ color 6,218,147\ longLabel B cell male adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR381PXW Signal\ track wgEncodeReg4Epigenetics_ENCFF134KAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF843PHT ENCSR412YGM Signal bigWig GM12878 ZSCAN29 ENCSR412YGM signal 2 2846 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f906651d-a872-48ed-b924-88365a9be45e/ENCFF843PHT.bigWig\ color 254,75,173\ longLabel GM12878 ZSCAN29 ENCSR412YGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412YGM Signal\ track wgEncodeReg4TfChip_ENCFF843PHT\ type bigWig\ visibility full\ SmallAirwayEpithelialCellsDonor3_CNhs12016_ctss_rev SmallAirwayEpithelialCellsD3- bigWig Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_reverse 0 2846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor3.CNhs12016.11406-118E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11406-118E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallAirwayEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmallAirwayEpithelialCellsDonor3_CNhs12016_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2\ urlLabel FANTOM5 Details:\ SmallAirwayEpithelialCellsDonor3_CNhs12016_tpm_rev SmallAirwayEpithelialCellsD3- bigWig Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_reverse 1 2846 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Small%20Airway%20Epithelial%20Cells%2c%20donor3.CNhs12016.11406-118E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Small Airway Epithelial Cells, donor3_CNhs12016_11406-118E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11406-118E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallAirwayEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmallAirwayEpithelialCellsDonor3_CNhs12016_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11406-118E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF828UCX ENCSR382JUJ Peak bigBed 5 Superior temporal gyrus tissue male adult 84 years DNase peak 4 2847 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ae70c356-dfb3-4b9e-88f8-5bc4cd608076/ENCFF828UCX.bigBed\ color 6,218,147\ labelFields none\ longLabel Superior temporal gyrus tissue male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR382JUJ Peak\ track wgEncodeReg4Epigenetics_ENCFF828UCX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF889AMU ENCSR412ZDC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHR AHR peaks 4 2847 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/5a6ed373-7f86-4b5d-adb7-78f784b312f2/ENCFF889AMU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHR AHR peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412ZDC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF889AMU\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_ctss_fwd SmcAirwayAsthmaD1+ bigWig Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_forward 0 2847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor1.CNhs14183.11960-126C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11960-126C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_tpm_fwd SmcAirwayAsthmaD1+ bigWig Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_forward 1 2847 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor1.CNhs14183.11960-126C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11960-126C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF239CTO ENCSR382JUJ Signal bigWig Superior temporal gyrus tissue male adult 84 years DNase signal 2 2848 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e94d3152-aa45-40cf-8a7d-e8f80a2016a1/ENCFF239CTO.bigWig\ color 6,218,147\ longLabel Superior temporal gyrus tissue male adult 84 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR382JUJ Signal\ track wgEncodeReg4Epigenetics_ENCFF239CTO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF808SMN ENCSR412ZDC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHR AHR ENCSR412ZDC signal 2 2848 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/55643c2b-b6c5-4af2-b956-b01da2da69ec/ENCFF808SMN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHR AHR ENCSR412ZDC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR412ZDC Signal\ track wgEncodeReg4TfChip_ENCFF808SMN\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_ctss_rev SmcAirwayAsthmaD1- bigWig Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_reverse 0 2848 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor1.CNhs14183.11960-126C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11960-126C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_tpm_rev SmcAirwayAsthmaD1- bigWig Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_reverse 1 2848 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor1.CNhs14183.11960-126C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor1_CNhs14183_11960-126C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11960-126C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor1_CNhs14183_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11960-126C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF273DIB ENCSR382LBS Peak bigBed 5 NCI-H929 ATAC peak 4 2849 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/308f0476-8f3b-443d-944c-768d0441de8c/ENCFF273DIB.bigBed\ color 2,199,185\ longLabel NCI-H929 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR382LBS Peak\ track wgEncodeReg4Epigenetics_ENCFF273DIB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF430OSX ENCSR413AJG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 peaks 4 2849 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/c6d53481-5e12-4ff7-bc14-df74c151472e/ENCFF430OSX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR413AJG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF430OSX\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_ctss_fwd SmcAirwayAsthmaD2+ bigWig Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_forward 0 2849 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor2.CNhs14184.11961-126C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11961-126C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_tpm_fwd SmcAirwayAsthmaD2+ bigWig Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_forward 1 2849 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor2.CNhs14184.11961-126C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11961-126C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF573SLV ENCSR382LBS Signal bigWig NCI-H929 ATAC signal 2 2850 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/ffe65f6c-50aa-4617-b30e-3a88dd1deaf5/ENCFF573SLV.bigWig\ color 2,199,185\ longLabel NCI-H929 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR382LBS Signal\ track wgEncodeReg4Epigenetics_ENCFF573SLV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF871HCD ENCSR413AJG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 ENCSR413AJG signal 2 2850 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/6275ef3f-0916-417e-bd21-0b498b6dfbcd/ENCFF871HCD.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 ENCSR413AJG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR413AJG Signal\ track wgEncodeReg4TfChip_ENCFF871HCD\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_ctss_rev SmcAirwayAsthmaD2- bigWig Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_reverse 0 2850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor2.CNhs14184.11961-126C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11961-126C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_tpm_rev SmcAirwayAsthmaD2- bigWig Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_reverse 1 2850 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor2.CNhs14184.11961-126C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor2_CNhs14184_11961-126C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11961-126C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor2_CNhs14184_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11961-126C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF239LAM ENCSR383AEO Peak bigBed 5 Layer of hippocampus tissue male adult 73 years H3K4me3 peak 4 2851 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8d5fea7d-826f-4aed-9127-f3e58ac9339b/ENCFF239LAM.bigBed\ color 255,0,0\ longLabel Layer of hippocampus tissue male adult 73 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383AEO Peak\ track wgEncodeReg4Epigenetics_ENCFF239LAM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF574PBR ENCSR413CVQ Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF423 ZNF423 peaks 4 2851 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/2e26b52c-dd31-455d-8744-16ab836eb6ad/ENCFF574PBR.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF423 ZNF423 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR413CVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF574PBR\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_ctss_fwd SmcAirwayAsthmaD3+ bigWig Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_forward 0 2851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor3.CNhs14186.11962-126C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11962-126C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_tpm_fwd SmcAirwayAsthmaD3+ bigWig Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_forward 1 2851 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor3.CNhs14186.11962-126C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11962-126C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF231KHQ ENCSR383AEO Signal bigWig Layer of hippocampus tissue male adult 73 years H3K4me3 signal 2 2852 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2f7028f9-8cf6-4588-8be2-cbce03769fe6/ENCFF231KHQ.bigWig\ color 255,0,0\ longLabel Layer of hippocampus tissue male adult 73 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383AEO Signal\ track wgEncodeReg4Epigenetics_ENCFF231KHQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF124JPD ENCSR413CVQ Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF423 ZNF423 ENCSR413CVQ signal 2 2852 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/d081beae-83da-456e-8def-dad406cc3b5b/ENCFF124JPD.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF423 ZNF423 ENCSR413CVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR413CVQ Signal\ track wgEncodeReg4TfChip_ENCFF124JPD\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_ctss_rev SmcAirwayAsthmaD3- bigWig Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_reverse 0 2852 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor3.CNhs14186.11962-126C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11962-126C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_tpm_rev SmcAirwayAsthmaD3- bigWig Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_reverse 1 2852 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor3.CNhs14186.11962-126C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor3_CNhs14186_11962-126C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11962-126C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor3_CNhs14186_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11962-126C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF241XVV ENCSR383BLX Peak bigBed 5 Fibroblast of skin of right biceps male embryo 97 days DNase peak 4 2853 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/224af05b-2818-4538-a2c5-845afc1a8a73/ENCFF241XVV.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of skin of right biceps male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383BLX Peak\ track wgEncodeReg4Epigenetics_ENCFF241XVV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF145VIB ENCSR414SWG Peak bigBed 5 Gastrocnemius medialis tissue female adult (51 years) POLR2A peaks 4 2853 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a300aa0f-2e75-4d77-9804-16810085b559/ENCFF145VIB.bigBed\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR414SWG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF145VIB\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_ctss_fwd SmcAirwayAsthmaD4+ bigWig Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_forward 0 2853 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor4.CNhs14187.11963-126D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11963-126D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_tpm_fwd SmcAirwayAsthmaD4+ bigWig Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_forward 1 2853 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor4.CNhs14187.11963-126D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11963-126D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF027NBT ENCSR383BLX Signal bigWig Fibroblast of skin of right biceps male embryo 97 days DNase signal 2 2854 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/84f558de-eae7-44d9-80ec-a2f892349489/ENCFF027NBT.bigWig\ color 6,218,147\ longLabel Fibroblast of skin of right biceps male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383BLX Signal\ track wgEncodeReg4Epigenetics_ENCFF027NBT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF912MTT ENCSR414SWG Signal bigWig Gastrocnemius medialis tissue female adult (51 years) POLR2A ENCSR414SWG signal 2 2854 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/0be0f382-6eb7-4364-880e-810a3fd34793/ENCFF912MTT.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (51 years) POLR2A ENCSR414SWG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR414SWG Signal\ track wgEncodeReg4TfChip_ENCFF912MTT\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_ctss_rev SmcAirwayAsthmaD4- bigWig Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_reverse 0 2854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor4.CNhs14187.11963-126D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11963-126D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_tpm_rev SmcAirwayAsthmaD4- bigWig Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_reverse 1 2854 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor4.CNhs14187.11963-126D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor4_CNhs14187_11963-126D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11963-126D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor4_CNhs14187_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11963-126D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF875OKM ENCSR383RDZ Peak bigBed 5 GM19328 ATAC peak 4 2855 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/2fb1237e-5d8a-419e-9986-c66f1a439fd2/ENCFF875OKM.bigBed\ color 2,199,185\ longLabel GM19328 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383RDZ Peak\ track wgEncodeReg4Epigenetics_ENCFF875OKM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF043KAM ENCSR414TPL Peak bigBed 5 Gastroesophageal sphincter tissue male adult (37 years) POLR2A peaks 4 2855 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/2c1a3d86-76ee-4870-a4e2-4f062864d8fa/ENCFF043KAM.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR414TPL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF043KAM\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_ctss_fwd SmcAirwayAsthmaD5+ bigWig Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_forward 0 2855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor5.CNhs14188.11964-126D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11964-126D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_tpm_fwd SmcAirwayAsthmaD5+ bigWig Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_forward 1 2855 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor5.CNhs14188.11964-126D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11964-126D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD5+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF580WZB ENCSR383RDZ Signal bigWig GM19328 ATAC signal 2 2856 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/94f4d114-fa60-431a-b899-032eb8100423/ENCFF580WZB.bigWig\ color 2,199,185\ longLabel GM19328 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383RDZ Signal\ track wgEncodeReg4Epigenetics_ENCFF580WZB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF465WJS ENCSR414TPL Signal bigWig Gastroesophageal sphincter tissue male adult (37 years) POLR2A ENCSR414TPL signal 2 2856 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/1b108e7d-0c7d-45ed-84b7-7e66086690f5/ENCFF465WJS.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (37 years) POLR2A ENCSR414TPL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR414TPL Signal\ track wgEncodeReg4TfChip_ENCFF465WJS\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_ctss_rev SmcAirwayAsthmaD5- bigWig Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_reverse 0 2856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor5.CNhs14188.11964-126D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11964-126D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_tpm_rev SmcAirwayAsthmaD5- bigWig Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_reverse 1 2856 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor5.CNhs14188.11964-126D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor5_CNhs14188_11964-126D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11964-126D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD5-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor5_CNhs14188_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11964-126D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF470TCA ENCSR383SNM Peak bigBed 5 IPS DF 19.11 DNase peak 4 2857 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/c6df822d-875d-4ea8-ac73-a0d784f40884/ENCFF470TCA.bigBed\ color 6,218,147\ labelFields none\ longLabel IPS DF 19.11 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383SNM Peak\ track wgEncodeReg4Epigenetics_ENCFF470TCA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF738EUI ENCSR414TYY Peak bigBed 5 K562 RUNX1 peaks 4 2857 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/0cf26158-f619-41a2-87c7-1cd924029283/ENCFF738EUI.bigBed\ labelFields none\ longLabel K562 RUNX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR414TYY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF738EUI\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_ctss_fwd SmcAirwayAsthmaD6+ bigWig Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_forward 0 2857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor6.CNhs14189.11965-126D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11965-126D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_tpm_fwd SmcAirwayAsthmaD6+ bigWig Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_forward 1 2857 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor6.CNhs14189.11965-126D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11965-126D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD6+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF167NIE ENCSR383SNM Signal bigWig IPS DF 19.11 DNase signal 2 2858 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/27b98b5b-2a50-4e3a-a736-775bbe0d2eff/ENCFF167NIE.bigWig\ color 6,218,147\ longLabel IPS DF 19.11 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR383SNM Signal\ track wgEncodeReg4Epigenetics_ENCFF167NIE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF654QOE ENCSR414TYY Signal bigWig K562 RUNX1 ENCSR414TYY signal 2 2858 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/726eb7d9-97d4-4379-9f44-833b3d5b2cea/ENCFF654QOE.bigWig\ color 254,75,173\ longLabel K562 RUNX1 ENCSR414TYY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR414TYY Signal\ track wgEncodeReg4TfChip_ENCFF654QOE\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_ctss_rev SmcAirwayAsthmaD6- bigWig Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_reverse 0 2858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor6.CNhs14189.11965-126D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11965-126D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayAsthmaD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_tpm_rev SmcAirwayAsthmaD6- bigWig Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_reverse 1 2858 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20asthmatic%2c%20donor6.CNhs14189.11965-126D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, asthmatic, donor6_CNhs14189_11965-126D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11965-126D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayAsthmaD6-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayAsthmaticDonor6_CNhs14189_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11965-126D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF283NFW ENCSR384AIT Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K27ac peak 4 2859 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/f4f88a2e-ea1a-4cb9-b7e9-46c3d4bd0e0f/ENCFF283NFW.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR384AIT Peak\ track wgEncodeReg4Epigenetics_ENCFF283NFW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF362CDQ ENCSR415AEB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF48 ZNF48 peaks 4 2859 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3ed58a79-4246-448e-8f8a-31dcf0398ab2/ENCFF362CDQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF48 ZNF48 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR415AEB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF362CDQ\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayControlDonor1_CNhs14190_ctss_fwd SmcAirwayControlD1+ bigWig Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_forward 0 2859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor1.CNhs14190.11966-126D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11966-126D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor1_CNhs14190_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor1_CNhs14190_tpm_fwd SmcAirwayControlD1+ bigWig Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_forward 1 2859 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor1.CNhs14190.11966-126D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11966-126D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor1_CNhs14190_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF436NYF ENCSR384AIT Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K27ac signal 2 2860 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/5d876611-707b-47cb-8d88-ae10c260aeb5/ENCFF436NYF.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR384AIT Signal\ track wgEncodeReg4Epigenetics_ENCFF436NYF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF377BFH ENCSR415AEB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF48 ZNF48 ENCSR415AEB signal 2 2860 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c26c43ae-2ffd-4bb1-8272-5bb26595b32f/ENCFF377BFH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF48 ZNF48 ENCSR415AEB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR415AEB Signal\ track wgEncodeReg4TfChip_ENCFF377BFH\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayControlDonor1_CNhs14190_ctss_rev SmcAirwayControlD1- bigWig Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_reverse 0 2860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor1.CNhs14190.11966-126D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11966-126D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor1_CNhs14190_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor1_CNhs14190_tpm_rev SmcAirwayControlD1- bigWig Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_reverse 1 2860 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor1.CNhs14190.11966-126D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor1_CNhs14190_11966-126D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11966-126D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor1_CNhs14190_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11966-126D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF924OWK ENCSR384GGJ Peak bigBed 5 T-helper 1 cell male adult 38 years DNase peak 4 2861 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/362e04fa-984f-4020-af6b-56aac5125a3e/ENCFF924OWK.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell male adult 38 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR384GGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF924OWK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF026NCK ENCSR415MOW Peak bigBed 5 Right lobe of liver tissue female adult (53 years) POLR2A peaks 4 2861 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6e1e0e64-e72a-4e78-aa5b-e32033101113/ENCFF026NCK.bigBed\ labelFields none\ longLabel Right lobe of liver tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR415MOW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF026NCK\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayControlDonor2_CNhs14191_ctss_fwd SmcAirwayControlD2+ bigWig Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_forward 0 2861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor2.CNhs14191.11967-126D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11967-126D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor2_CNhs14191_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor2_CNhs14191_tpm_fwd SmcAirwayControlD2+ bigWig Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_forward 1 2861 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor2.CNhs14191.11967-126D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11967-126D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor2_CNhs14191_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF906SNG ENCSR384GGJ Signal bigWig T-helper 1 cell male adult 38 years DNase signal 2 2862 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/7e144f66-f3d6-49af-8e5b-05cd3bd6ff05/ENCFF906SNG.bigWig\ color 6,218,147\ longLabel T-helper 1 cell male adult 38 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR384GGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF906SNG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF263FLJ ENCSR415MOW Signal bigWig Right lobe of liver tissue female adult (53 years) POLR2A ENCSR415MOW signal 2 2862 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/71caae66-3701-49a3-a980-e360207e2ef8/ENCFF263FLJ.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (53 years) POLR2A ENCSR415MOW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR415MOW Signal\ track wgEncodeReg4TfChip_ENCFF263FLJ\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayControlDonor2_CNhs14191_ctss_rev SmcAirwayControlD2- bigWig Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_reverse 0 2862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor2.CNhs14191.11967-126D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11967-126D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor2_CNhs14191_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor2_CNhs14191_tpm_rev SmcAirwayControlD2- bigWig Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_reverse 1 2862 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor2.CNhs14191.11967-126D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor2_CNhs14191_11967-126D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11967-126D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor2_CNhs14191_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11967-126D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF678TFU ENCSR384MUF Peak bigBed 5 Tibial nerve tissue male adult 37 years H3K4me3 peak 4 2863 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/bd8c5758-01c2-43bd-b574-8ffbeff3fee1/ENCFF678TFU.bigBed\ color 255,0,0\ longLabel Tibial nerve tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR384MUF Peak\ track wgEncodeReg4Epigenetics_ENCFF678TFU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF453OQF ENCSR415NNQ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP12 THAP12 peaks 4 2863 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/04/8390c84b-8ae8-4dfd-b5d1-7479443170e9/ENCFF453OQF.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP12 THAP12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR415NNQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF453OQF\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayControlDonor3_CNhs14192_ctss_fwd SmcAirwayControlD3+ bigWig Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_forward 0 2863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor3.CNhs14192.11968-126D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11968-126D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor3_CNhs14192_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor3_CNhs14192_tpm_fwd SmcAirwayControlD3+ bigWig Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_forward 1 2863 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor3.CNhs14192.11968-126D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11968-126D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor3_CNhs14192_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF201UPO ENCSR384MUF Signal bigWig Tibial nerve tissue male adult 37 years H3K4me3 signal 2 2864 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/75291376-0475-43c8-bb43-2f70a41262a1/ENCFF201UPO.bigWig\ color 255,0,0\ longLabel Tibial nerve tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR384MUF Signal\ track wgEncodeReg4Epigenetics_ENCFF201UPO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF376WFQ ENCSR415NNQ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP12 THAP12 ENCSR415NNQ signal 2 2864 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/04/c1f7c2c9-e814-40ac-92b6-6e026b1ff7cd/ENCFF376WFQ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens THAP12 THAP12 ENCSR415NNQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR415NNQ Signal\ track wgEncodeReg4TfChip_ENCFF376WFQ\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayControlDonor3_CNhs14192_ctss_rev SmcAirwayControlD3- bigWig Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_reverse 0 2864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor3.CNhs14192.11968-126D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11968-126D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor3_CNhs14192_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor3_CNhs14192_tpm_rev SmcAirwayControlD3- bigWig Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_reverse 1 2864 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor3.CNhs14192.11968-126D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor3_CNhs14192_11968-126D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11968-126D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor3_CNhs14192_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11968-126D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF952KRU ENCSR385AMY Peak bigBed 5 Hindlimb muscle tissue male embryo 120 days DNase peak 4 2865 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/1a779e80-e65d-4ccc-a5b9-13948c76c904/ENCFF952KRU.bigBed\ color 6,218,147\ labelFields none\ longLabel Hindlimb muscle tissue male embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR385AMY Peak\ track wgEncodeReg4Epigenetics_ENCFF952KRU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF782TAA ENCSR415TXN Peak bigBed 5 K562 NONO peaks 4 2865 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ba2330fc-db4d-4989-a938-79e01afbac79/ENCFF782TAA.bigBed\ labelFields none\ longLabel K562 NONO peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR415TXN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF782TAA\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAirwayControlDonor4_CNhs14193_ctss_fwd SmcAirwayControlD4+ bigWig Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_forward 0 2865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor4.CNhs14193.11969-126D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11969-126D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor4_CNhs14193_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor4_CNhs14193_tpm_fwd SmcAirwayControlD4+ bigWig Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_forward 1 2865 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor4.CNhs14193.11969-126D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11969-126D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD4+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAirwayControlDonor4_CNhs14193_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF641EOS ENCSR385AMY Signal bigWig Hindlimb muscle tissue male embryo 120 days DNase signal 2 2866 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/d5d52d54-d5ba-454c-af12-213afe593e16/ENCFF641EOS.bigWig\ color 6,218,147\ longLabel Hindlimb muscle tissue male embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR385AMY Signal\ track wgEncodeReg4Epigenetics_ENCFF641EOS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF758RLK ENCSR415TXN Signal bigWig K562 NONO ENCSR415TXN signal 2 2866 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/498a2291-0dae-4285-889f-fa3a06dc31c3/ENCFF758RLK.bigWig\ color 254,75,173\ longLabel K562 NONO ENCSR415TXN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR415TXN Signal\ track wgEncodeReg4TfChip_ENCFF758RLK\ type bigWig\ visibility full\ SmoothMuscleCellsAirwayControlDonor4_CNhs14193_ctss_rev SmcAirwayControlD4- bigWig Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_reverse 0 2866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor4.CNhs14193.11969-126D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11969-126D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAirwayControlD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor4_CNhs14193_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAirwayControlDonor4_CNhs14193_tpm_rev SmcAirwayControlD4- bigWig Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_reverse 1 2866 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20muscle%20cells%20-%20airway%2c%20control%2c%20donor4.CNhs14193.11969-126D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth muscle cells - airway, control, donor4_CNhs14193_11969-126D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11969-126D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAirwayControlD4-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAirwayControlDonor4_CNhs14193_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11969-126D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF956TSB ENCSR385SZQ Peak bigBed 5 MCF 10A treated with 1 μM tamoxifen for 6 hours DNase peak 4 2867 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/a94f3973-312a-4063-a789-dfcd5b2233c6/ENCFF956TSB.bigBed\ color 6,218,147\ labelFields none\ longLabel MCF 10A treated with 1 μM tamoxifen for 6 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR385SZQ Peak\ track wgEncodeReg4Epigenetics_ENCFF956TSB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF763IEA ENCSR416HDG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRA RXRA peaks 4 2867 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/12/dec256a6-3499-4fcb-9ce1-64aaf8804a3d/ENCFF763IEA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRA RXRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR416HDG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF763IEA\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAorticDonor0_CNhs10838_ctss_fwd SmcAorticCytofracD0+ bigWig Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_forward 0 2867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0.CNhs10838.11210-116A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11210-116A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor0_CNhs10838_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor0_CNhs10838_tpm_fwd SmcAorticCytofracD0+ bigWig Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_forward 1 2867 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0.CNhs10838.11210-116A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11210-116A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor0_CNhs10838_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF230JUW ENCSR385SZQ Signal bigWig MCF 10A treated with 1 μM tamoxifen for 6 hours DNase signal 2 2868 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ec0e9d3f-9ecf-40ac-a7ed-cced16eba33d/ENCFF230JUW.bigWig\ color 6,218,147\ longLabel MCF 10A treated with 1 μM tamoxifen for 6 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR385SZQ Signal\ track wgEncodeReg4Epigenetics_ENCFF230JUW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF006APV ENCSR416HDG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRA RXRA ENCSR416HDG signal 2 2868 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/12/8870ff84-f165-4949-b81b-3bd40b41cce0/ENCFF006APV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRA RXRA ENCSR416HDG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR416HDG Signal\ track wgEncodeReg4TfChip_ENCFF006APV\ type bigWig\ visibility full\ SmoothMuscleCellsAorticDonor0_CNhs10838_ctss_rev SmcAorticCytofracD0- bigWig Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_reverse 0 2868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0.CNhs10838.11210-116A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11210-116A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor0_CNhs10838_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor0_CNhs10838_tpm_rev SmcAorticCytofracD0- bigWig Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_reverse 1 2868 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0.CNhs10838.11210-116A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor0_CNhs10838_11210-116A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11210-116A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor0_CNhs10838_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11210-116A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF556HBF ENCSR385XHV Peak bigBed 5 T-cell female adult 31 years DNase peak 4 2869 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/6b866c65-2b06-4d56-86f7-30162ad1c153/ENCFF556HBF.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 31 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR385XHV Peak\ track wgEncodeReg4Epigenetics_ENCFF556HBF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF584CTB ENCSR416QLJ Peak bigBed 5 K562 stably expressing CEBPB CEBPB peaks 4 2869 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/b1363b32-7c6e-4d96-b222-f1e05a74d5d9/ENCFF584CTB.bigBed\ labelFields none\ longLabel K562 stably expressing CEBPB CEBPB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR416QLJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF584CTB\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAorticDonor1_CNhs11085_ctss_fwd SmcAorticCytofracD1+ bigWig Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_forward 0 2869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor1.CNhs11085.11283-116I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11283-116I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor1_CNhs11085_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor1_CNhs11085_tpm_fwd SmcAorticCytofracD1+ bigWig Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_forward 1 2869 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor1.CNhs11085.11283-116I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11283-116I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor1_CNhs11085_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF091ALI ENCSR385XHV Signal bigWig T-cell female adult 31 years DNase signal 2 2870 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/48fe3d26-ccd7-4de2-a9dd-97fc5180dc00/ENCFF091ALI.bigWig\ color 6,218,147\ longLabel T-cell female adult 31 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR385XHV Signal\ track wgEncodeReg4Epigenetics_ENCFF091ALI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF751PZT ENCSR416QLJ Signal bigWig K562 stably expressing CEBPB CEBPB ENCSR416QLJ signal 2 2870 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/3d6eead7-73a0-4f3b-a8c6-cab70c191453/ENCFF751PZT.bigWig\ color 254,75,173\ longLabel K562 stably expressing CEBPB CEBPB ENCSR416QLJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR416QLJ Signal\ track wgEncodeReg4TfChip_ENCFF751PZT\ type bigWig\ visibility full\ SmoothMuscleCellsAorticDonor1_CNhs11085_ctss_rev SmcAorticCytofracD1- bigWig Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_reverse 0 2870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor1.CNhs11085.11283-116I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11283-116I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor1_CNhs11085_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor1_CNhs11085_tpm_rev SmcAorticCytofracD1- bigWig Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_reverse 1 2870 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor1.CNhs11085.11283-116I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor1_CNhs11085_11283-116I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11283-116I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor1_CNhs11085_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11283-116I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF516VCH ENCSR386BOX Peak bigBed 5 Activated CD4 positive, naive alpha-beta T cell male adult 48 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak 4 2871 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/7c19892b-bd53-407e-9670-997faf3e3114/ENCFF516VCH.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 48 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386BOX Peak\ track wgEncodeReg4Epigenetics_ENCFF516VCH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF281RQN ENCSR417EWD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3 FUBP3 peaks 4 2871 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/60a2ec18-62b9-4a7f-962b-4ddbdca900f4/ENCFF281RQN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3 FUBP3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR417EWD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF281RQN\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAorticDonor2_CNhs11305_ctss_fwd SmcAorticCytofracD2+ bigWig Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_forward 0 2871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor2.CNhs11305.11360-117I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11360-117I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor2_CNhs11305_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor2_CNhs11305_tpm_fwd SmcAorticCytofracD2+ bigWig Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_forward 1 2871 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor2.CNhs11305.11360-117I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11360-117I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor2_CNhs11305_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF950TCX ENCSR386BOX Signal bigWig Activated CD4 positive, naive alpha-beta T cell male adult 48 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal 2 2872 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/96997e90-9d84-463b-bcba-e41283ecb2eb/ENCFF950TCX.bigWig\ color 6,218,147\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 48 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386BOX Signal\ track wgEncodeReg4Epigenetics_ENCFF950TCX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF456OBL ENCSR417EWD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3 FUBP3 ENCSR417EWD signal 2 2872 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/84ec1422-cfcf-4724-bd87-7abcef476f5f/ENCFF456OBL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FUBP3 FUBP3 ENCSR417EWD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR417EWD Signal\ track wgEncodeReg4TfChip_ENCFF456OBL\ type bigWig\ visibility full\ SmoothMuscleCellsAorticDonor2_CNhs11305_ctss_rev SmcAorticCytofracD2- bigWig Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_reverse 0 2872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor2.CNhs11305.11360-117I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11360-117I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor2_CNhs11305_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor2_CNhs11305_tpm_rev SmcAorticCytofracD2- bigWig Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_reverse 1 2872 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor2.CNhs11305.11360-117I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor2_CNhs11305_11360-117I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11360-117I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor2_CNhs11305_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11360-117I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF401VHL ENCSR386CKJ Peak bigBed 5 Skin epidermis tissue male adult 75 years H3K27ac peak 4 2873 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/440869f0-0b19-4de5-8073-4c91a1fa98f8/ENCFF401VHL.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue male adult 75 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386CKJ Peak\ track wgEncodeReg4Epigenetics_ENCFF401VHL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF847JIE ENCSR417VWF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZEB2 ZEB2 peaks 4 2873 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/0b515482-5e39-4230-a6c5-9b9c79b0f606/ENCFF847JIE.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZEB2 ZEB2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR417VWF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF847JIE\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsAorticDonor3_CNhs11309_ctss_fwd SmcAorticCytofracD3+ bigWig Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_forward 0 2873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor3.CNhs11309.11432-118H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11432-118H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor3_CNhs11309_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor3_CNhs11309_tpm_fwd SmcAorticCytofracD3+ bigWig Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_forward 1 2873 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor3.CNhs11309.11432-118H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11432-118H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsAorticDonor3_CNhs11309_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF492ROW ENCSR386CKJ Signal bigWig Skin epidermis tissue male adult 75 years H3K27ac signal 2 2874 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/8a34f9d1-2877-45df-afa7-801bf47395b5/ENCFF492ROW.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue male adult 75 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386CKJ Signal\ track wgEncodeReg4Epigenetics_ENCFF492ROW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF933MVK ENCSR417VWF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZEB2 ZEB2 ENCSR417VWF signal 2 2874 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/a5cd3bbb-8901-401f-87c0-87f0e8d4f658/ENCFF933MVK.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZEB2 ZEB2 ENCSR417VWF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR417VWF Signal\ track wgEncodeReg4TfChip_ENCFF933MVK\ type bigWig\ visibility full\ SmoothMuscleCellsAorticDonor3_CNhs11309_ctss_rev SmcAorticCytofracD3- bigWig Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_reverse 0 2874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor3.CNhs11309.11432-118H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11432-118H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcAorticCytofracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor3_CNhs11309_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsAorticDonor3_CNhs11309_tpm_rev SmcAorticCytofracD3- bigWig Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_reverse 1 2874 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor3.CNhs11309.11432-118H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Aortic, donor3_CNhs11309_11432-118H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11432-118H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcAorticCytofracD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsAorticDonor3_CNhs11309_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11432-118H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF759TEF ENCSR386HAZ Peak bigBed 5 Transverse colon tissue female adult 51 years ATAC peak 4 2875 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/7d9a8910-fc91-492e-bbad-9a0d73c39bad/ENCFF759TEF.bigBed\ color 2,199,185\ longLabel Transverse colon tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386HAZ Peak\ track wgEncodeReg4Epigenetics_ENCFF759TEF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF040AZE ENCSR418MKG Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF692 ZNF692 peaks 4 2875 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/1d4af285-05a3-4254-b7c3-ed2fd38a8797/ENCFF040AZE.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF692 ZNF692 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR418MKG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF040AZE\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBladderDonor1_CNhs12893_ctss_fwd SmcBladderD1+ bigWig Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_forward 0 2875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bladder%2c%20donor1.CNhs12893.11519-119H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11519-119H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBladderD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBladderDonor1_CNhs12893_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBladderDonor1_CNhs12893_tpm_fwd SmcBladderD1+ bigWig Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_forward 1 2875 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bladder%2c%20donor1.CNhs12893.11519-119H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11519-119H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBladderD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBladderDonor1_CNhs12893_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF668GUI ENCSR386HAZ Signal bigWig Transverse colon tissue female adult 51 years ATAC signal 2 2876 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/f9d4f77d-a061-41a5-a853-bdbaaaa8401c/ENCFF668GUI.bigWig\ color 2,199,185\ longLabel Transverse colon tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386HAZ Signal\ track wgEncodeReg4Epigenetics_ENCFF668GUI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF892LEJ ENCSR418MKG Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF692 ZNF692 ENCSR418MKG signal 2 2876 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/31a50751-16c1-4c56-b879-c99a9edd045e/ENCFF892LEJ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF692 ZNF692 ENCSR418MKG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR418MKG Signal\ track wgEncodeReg4TfChip_ENCFF892LEJ\ type bigWig\ visibility full\ SmoothMuscleCellsBladderDonor1_CNhs12893_ctss_rev SmcBladderD1- bigWig Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_reverse 0 2876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bladder%2c%20donor1.CNhs12893.11519-119H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11519-119H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBladderD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBladderDonor1_CNhs12893_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBladderDonor1_CNhs12893_tpm_rev SmcBladderD1- bigWig Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_reverse 1 2876 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bladder%2c%20donor1.CNhs12893.11519-119H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Bladder, donor1_CNhs12893_11519-119H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11519-119H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBladderD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBladderDonor1_CNhs12893_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11519-119H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF337AWR ENCSR386KFO Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K4me3 peak 4 2877 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/9f128771-a3af-479c-86c9-41bc7403f01d/ENCFF337AWR.bigBed\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386KFO Peak\ track wgEncodeReg4Epigenetics_ENCFF337AWR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF696SGD ENCSR418RRF Peak bigBed 5 H1 KDM1A peaks 4 2877 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/1a6cbfc4-19a1-4707-a88a-f2f7db69936f/ENCFF696SGD.bigBed\ labelFields none\ longLabel H1 KDM1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR418RRF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF696SGD\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_ctss_fwd SmcBrachiocephalicD1+ bigWig Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_forward 0 2877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor1.CNhs11086.11284-116I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11284-116I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrachiocephalicD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_tpm_fwd SmcBrachiocephalicD1+ bigWig Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_forward 1 2877 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor1.CNhs11086.11284-116I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11284-116I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrachiocephalicD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF914PSJ ENCSR386KFO Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K4me3 signal 2 2878 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6edc4765-affa-471b-90bb-d6655579a4cf/ENCFF914PSJ.bigWig\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386KFO Signal\ track wgEncodeReg4Epigenetics_ENCFF914PSJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF424JXD ENCSR418RRF Signal bigWig H1 KDM1A ENCSR418RRF signal 2 2878 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/a437b68a-e155-47d4-926b-922358262ecd/ENCFF424JXD.bigWig\ color 118,158,101\ longLabel H1 KDM1A ENCSR418RRF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR418RRF Signal\ track wgEncodeReg4TfChip_ENCFF424JXD\ type bigWig\ visibility full\ SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_ctss_rev SmcBrachiocephalicD1- bigWig Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_reverse 0 2878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor1.CNhs11086.11284-116I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11284-116I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrachiocephalicD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_tpm_rev SmcBrachiocephalicD1- bigWig Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_reverse 1 2878 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor1.CNhs11086.11284-116I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brachiocephalic, donor1_CNhs11086_11284-116I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11284-116I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrachiocephalicD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrachiocephalicDonor1_CNhs11086_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11284-116I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF153PKZ ENCSR386XPD Peak bigBed 5 Middle frontal area 46 tissue female adult 82 years DNase peak 4 2879 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/28/a0e92aae-257e-4c8c-a635-07ccd629270a/ENCFF153PKZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386XPD Peak\ track wgEncodeReg4Epigenetics_ENCFF153PKZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF701KWW ENCSR419ANE Peak bigBed 5 Peyer's patch tissue male adult (37 years) CTCF peaks 4 2879 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/b54ea2cb-99e6-47fb-ab79-78efd2ee8efa/ENCFF701KWW.bigBed\ labelFields none\ longLabel Peyer's patch tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419ANE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF701KWW\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_ctss_fwd SmcBrachiocephalicD2+ bigWig Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_forward 0 2879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor2.CNhs11985.11361-117I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11361-117I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrachiocephalicD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_tpm_fwd SmcBrachiocephalicD2+ bigWig Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_forward 1 2879 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor2.CNhs11985.11361-117I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11361-117I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrachiocephalicD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF497DIH ENCSR386XPD Signal bigWig Middle frontal area 46 tissue female adult 82 years DNase signal 2 2880 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/28/94e1edcc-841c-4439-91e9-62944608a7bb/ENCFF497DIH.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR386XPD Signal\ track wgEncodeReg4Epigenetics_ENCFF497DIH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF758HAD ENCSR419ANE Signal bigWig Peyer's patch tissue male adult (37 years) CTCF ENCSR419ANE signal 2 2880 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/297f8c17-80ca-4d10-a67e-12325264843e/ENCFF758HAD.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (37 years) CTCF ENCSR419ANE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419ANE Signal\ track wgEncodeReg4TfChip_ENCFF758HAD\ type bigWig\ visibility full\ SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_ctss_rev SmcBrachiocephalicD2- bigWig Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_reverse 0 2880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor2.CNhs11985.11361-117I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11361-117I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrachiocephalicD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_tpm_rev SmcBrachiocephalicD2- bigWig Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_reverse 1 2880 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor2.CNhs11985.11361-117I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brachiocephalic, donor2_CNhs11985_11361-117I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11361-117I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrachiocephalicD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrachiocephalicDonor2_CNhs11985_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11361-117I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF449TRL ENCSR387EYA Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years DNase peak 4 2881 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/8b2aba0e-c345-4e29-a71e-509b096c4a3e/ENCFF449TRL.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR387EYA Peak\ track wgEncodeReg4Epigenetics_ENCFF449TRL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF343JOP ENCSR419CNA Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H4 ZC3H4 peaks 4 2881 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/b8d42018-0afa-4da2-a4a6-1e8f0372fbe8/ENCFF343JOP.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H4 ZC3H4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419CNA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF343JOP\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_ctss_fwd SmcBrachiocephalicD3+ bigWig Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_forward 0 2881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor3.CNhs12043.11433-118H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11433-118H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrachiocephalicD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_tpm_fwd SmcBrachiocephalicD3+ bigWig Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_forward 1 2881 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor3.CNhs12043.11433-118H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11433-118H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrachiocephalicD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF399QIW ENCSR387EYA Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years DNase signal 2 2882 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/c7cd46ed-b421-4b1b-8464-b12353ba9bdf/ENCFF399QIW.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 43 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR387EYA Signal\ track wgEncodeReg4Epigenetics_ENCFF399QIW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF024ZVX ENCSR419CNA Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H4 ZC3H4 ENCSR419CNA signal 2 2882 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/0f9c066f-ad64-4dcd-a042-98cbe58ec206/ENCFF024ZVX.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H4 ZC3H4 ENCSR419CNA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419CNA Signal\ track wgEncodeReg4TfChip_ENCFF024ZVX\ type bigWig\ visibility full\ SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_ctss_rev SmcBrachiocephalicD3- bigWig Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_reverse 0 2882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor3.CNhs12043.11433-118H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11433-118H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrachiocephalicD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_tpm_rev SmcBrachiocephalicD3- bigWig Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_reverse 1 2882 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brachiocephalic%2c%20donor3.CNhs12043.11433-118H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brachiocephalic, donor3_CNhs12043_11433-118H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11433-118H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrachiocephalicD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrachiocephalicDonor3_CNhs12043_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11433-118H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF904AUX ENCSR388DHS Peak bigBed 5 Psoas muscle tissue female adult 59 years DNase peak 4 2883 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/59ee554f-9ba3-4f69-ac44-011e5cac9c72/ENCFF904AUX.bigBed\ color 6,218,147\ labelFields none\ longLabel Psoas muscle tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR388DHS Peak\ track wgEncodeReg4Epigenetics_ENCFF904AUX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF685NAH ENCSR419KSZ Peak bigBed 5 HepG2 NCOR1 peaks 4 2883 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/5ad563c9-77fa-42f5-865c-0398be3b7079/ENCFF685NAH.bigBed\ labelFields none\ longLabel HepG2 NCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419KSZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF685NAH\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBrainVascularDonor1_CNhs10863_ctss_fwd SmcBrainVascularD1+ bigWig Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_forward 0 2883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor1.CNhs10863.11234-116D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11234-116D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrainVascularD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrainVascularDonor1_CNhs10863_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrainVascularDonor1_CNhs10863_tpm_fwd SmcBrainVascularD1+ bigWig Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_forward 1 2883 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor1.CNhs10863.11234-116D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11234-116D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrainVascularD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrainVascularDonor1_CNhs10863_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF804POQ ENCSR388DHS Signal bigWig Psoas muscle tissue female adult 59 years DNase signal 2 2884 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/9ca90003-47e1-420f-803d-7526018b5e49/ENCFF804POQ.bigWig\ color 6,218,147\ longLabel Psoas muscle tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR388DHS Signal\ track wgEncodeReg4Epigenetics_ENCFF804POQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF072IMY ENCSR419KSZ Signal bigWig HepG2 NCOR1 ENCSR419KSZ signal 2 2884 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/ea4ef5b6-ca83-4966-b9a0-b87c5a6e0d1b/ENCFF072IMY.bigWig\ color 137,152,82\ longLabel HepG2 NCOR1 ENCSR419KSZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419KSZ Signal\ track wgEncodeReg4TfChip_ENCFF072IMY\ type bigWig\ visibility full\ SmoothMuscleCellsBrainVascularDonor1_CNhs10863_ctss_rev SmcBrainVascularD1- bigWig Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_reverse 0 2884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor1.CNhs10863.11234-116D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11234-116D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrainVascularD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrainVascularDonor1_CNhs10863_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrainVascularDonor1_CNhs10863_tpm_rev SmcBrainVascularD1- bigWig Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_reverse 1 2884 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor1.CNhs10863.11234-116D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brain Vascular, donor1_CNhs10863_11234-116D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11234-116D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrainVascularD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrainVascularDonor1_CNhs10863_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11234-116D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF530GUP ENCSR388HWB Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 peak 4 2885 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/6ef51311-9a6b-4fd7-9f56-1a0d898d91aa/ENCFF530GUP.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR388HWB Peak\ track wgEncodeReg4Epigenetics_ENCFF530GUP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF080XWY ENCSR419ODQ Peak bigBed 5 MCF-7 ZNF507 peaks 4 2885 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/707ec73c-b177-4fd7-9132-bdb209fbb30a/ENCFF080XWY.bigBed\ labelFields none\ longLabel MCF-7 ZNF507 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419ODQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF080XWY\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBrainVascularDonor2_CNhs11900_ctss_fwd SmcBrainVascularD2+ bigWig Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_forward 0 2885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor2.CNhs11900.11315-117D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11315-117D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrainVascularD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrainVascularDonor2_CNhs11900_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrainVascularDonor2_CNhs11900_tpm_fwd SmcBrainVascularD2+ bigWig Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_forward 1 2885 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor2.CNhs11900.11315-117D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11315-117D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrainVascularD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrainVascularDonor2_CNhs11900_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF766SOD ENCSR388HWB Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 signal 2 2886 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/74c577b3-3c54-4f37-a4f4-48d8bdb1dd56/ENCFF766SOD.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR388HWB Signal\ track wgEncodeReg4Epigenetics_ENCFF766SOD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF713BHQ ENCSR419ODQ Signal bigWig MCF-7 ZNF507 ENCSR419ODQ signal 2 2886 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c3ead531-1fb2-46e5-b657-4a2801e6b007/ENCFF713BHQ.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF507 ENCSR419ODQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419ODQ Signal\ track wgEncodeReg4TfChip_ENCFF713BHQ\ type bigWig\ visibility full\ SmoothMuscleCellsBrainVascularDonor2_CNhs11900_ctss_rev SmcBrainVascularD2- bigWig Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_reverse 0 2886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor2.CNhs11900.11315-117D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11315-117D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrainVascularD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrainVascularDonor2_CNhs11900_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrainVascularDonor2_CNhs11900_tpm_rev SmcBrainVascularD2- bigWig Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_reverse 1 2886 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor2.CNhs11900.11315-117D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brain Vascular, donor2_CNhs11900_11315-117D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11315-117D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrainVascularD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrainVascularDonor2_CNhs11900_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11315-117D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF843OKX ENCSR388NOI Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-17A for 1 hour DNase peak 4 2887 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/ddf53177-fcdf-4556-b6db-12f2acd8dc33/ENCFF843OKX.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-17A for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR388NOI Peak\ track wgEncodeReg4Epigenetics_ENCFF843OKX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF802OXN ENCSR419VVI Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624 ZNF624 peaks 4 2887 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/1fc5e6a5-494a-47be-8aa9-66e26d36ef20/ENCFF802OXN.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624 ZNF624 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419VVI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF802OXN\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBrainVascularDonor3_CNhs12004_ctss_fwd SmcBrainVascularD3+ bigWig Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_forward 0 2887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor3.CNhs12004.11391-118C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11391-118C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrainVascularD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrainVascularDonor3_CNhs12004_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrainVascularDonor3_CNhs12004_tpm_fwd SmcBrainVascularD3+ bigWig Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_forward 1 2887 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor3.CNhs12004.11391-118C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11391-118C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrainVascularD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBrainVascularDonor3_CNhs12004_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF181ZVA ENCSR388NOI Signal bigWig CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-17A for 1 hour DNase signal 2 2888 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/3da83d61-2794-44bc-bb9d-b260c4a90975/ENCFF181ZVA.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-17A for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR388NOI Signal\ track wgEncodeReg4Epigenetics_ENCFF181ZVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF984XAZ ENCSR419VVI Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624 ZNF624 ENCSR419VVI signal 2 2888 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/e696a1e5-9017-4720-8f80-b8e50bfbdafc/ENCFF984XAZ.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF624 ZNF624 ENCSR419VVI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR419VVI Signal\ track wgEncodeReg4TfChip_ENCFF984XAZ\ type bigWig\ visibility full\ SmoothMuscleCellsBrainVascularDonor3_CNhs12004_ctss_rev SmcBrainVascularD3- bigWig Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_reverse 0 2888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor3.CNhs12004.11391-118C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11391-118C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBrainVascularD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrainVascularDonor3_CNhs12004_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBrainVascularDonor3_CNhs12004_tpm_rev SmcBrainVascularD3- bigWig Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_reverse 1 2888 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Brain%20Vascular%2c%20donor3.CNhs12004.11391-118C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Brain Vascular, donor3_CNhs12004_11391-118C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11391-118C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBrainVascularD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBrainVascularDonor3_CNhs12004_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11391-118C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF783BCZ ENCSR389IHS Peak bigBed 5 T-cell male adult 24 years DNase peak 4 2889 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/4e03c976-38da-4f52-8b2b-f67f190c6780/ENCFF783BCZ.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR389IHS Peak\ track wgEncodeReg4Epigenetics_ENCFF783BCZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF778UKV ENCSR421DAO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33 ZBTB33 peaks 4 2889 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/e2bbc6c7-c80d-4041-8335-d168afff04f8/ENCFF778UKV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR421DAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF778UKV\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBronchialDonor1_CNhs11328_ctss_fwd SmcBronchialD1+ bigWig Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_forward 0 2889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor1.CNhs11328.11512-119G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11512-119G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBronchialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBronchialDonor1_CNhs11328_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBronchialDonor1_CNhs11328_tpm_fwd SmcBronchialD1+ bigWig Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_forward 1 2889 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor1.CNhs11328.11512-119G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11512-119G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBronchialD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBronchialDonor1_CNhs11328_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF789RFF ENCSR389IHS Signal bigWig T-cell male adult 24 years DNase signal 2 2890 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/8be1a0be-5a72-4491-95b6-6ba2d8507654/ENCFF789RFF.bigWig\ color 6,218,147\ longLabel T-cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR389IHS Signal\ track wgEncodeReg4Epigenetics_ENCFF789RFF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF563QFI ENCSR421DAO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33 ZBTB33 ENCSR421DAO signal 2 2890 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/7ed91fb9-c657-4055-8bf1-101c258d389b/ENCFF563QFI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB33 ZBTB33 ENCSR421DAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR421DAO Signal\ track wgEncodeReg4TfChip_ENCFF563QFI\ type bigWig\ visibility full\ SmoothMuscleCellsBronchialDonor1_CNhs11328_ctss_rev SmcBronchialD1- bigWig Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_reverse 0 2890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor1.CNhs11328.11512-119G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11512-119G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBronchialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBronchialDonor1_CNhs11328_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBronchialDonor1_CNhs11328_tpm_rev SmcBronchialD1- bigWig Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_reverse 1 2890 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor1.CNhs11328.11512-119G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Bronchial, donor1_CNhs11328_11512-119G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11512-119G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBronchialD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBronchialDonor1_CNhs11328_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11512-119G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF978HDZ ENCSR389WJO Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 ATAC peak 4 2891 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/23cea68e-5d4f-4745-9cf7-b2c21a00b823/ENCFF978HDZ.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR389WJO Peak\ track wgEncodeReg4Epigenetics_ENCFF978HDZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF212SBM ENCSR422VAG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN29 ZSCAN29 peaks 4 2891 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/5aa78b0e-a53e-41cc-8913-f6ef8b10147f/ENCFF212SBM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN29 ZSCAN29 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR422VAG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF212SBM\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsBronchialDonor2_CNhs12348_ctss_fwd SmcBronchialD2+ bigWig Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_forward 0 2891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor2.CNhs12348.11592-120G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11592-120G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBronchialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBronchialDonor2_CNhs12348_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBronchialDonor2_CNhs12348_tpm_fwd SmcBronchialD2+ bigWig Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_forward 1 2891 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor2.CNhs12348.11592-120G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11592-120G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBronchialD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsBronchialDonor2_CNhs12348_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF322YJM ENCSR389WJO Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 ATAC signal 2 2892 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/bb08ffec-e2f5-4ee4-9ed0-08a79c0da923/ENCFF322YJM.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR389WJO Signal\ track wgEncodeReg4Epigenetics_ENCFF322YJM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF535DQL ENCSR422VAG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN29 ZSCAN29 ENCSR422VAG signal 2 2892 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/95f17596-ad9d-4a65-9472-d37e04707c14/ENCFF535DQL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN29 ZSCAN29 ENCSR422VAG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR422VAG Signal\ track wgEncodeReg4TfChip_ENCFF535DQL\ type bigWig\ visibility full\ SmoothMuscleCellsBronchialDonor2_CNhs12348_ctss_rev SmcBronchialD2- bigWig Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_reverse 0 2892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor2.CNhs12348.11592-120G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11592-120G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcBronchialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBronchialDonor2_CNhs12348_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsBronchialDonor2_CNhs12348_tpm_rev SmcBronchialD2- bigWig Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_reverse 1 2892 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Bronchial%2c%20donor2.CNhs12348.11592-120G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Bronchial, donor2_CNhs12348_11592-120G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11592-120G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcBronchialD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsBronchialDonor2_CNhs12348_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11592-120G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF163NMR ENCSR390SLL Peak bigBed 5 Left cardiac atrium tissue female adult 42 years ATAC peak 4 2893 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/a0c49440-5770-43a0-a043-ccc52a89d01c/ENCFF163NMR.bigBed\ color 2,199,185\ longLabel Left cardiac atrium tissue female adult 42 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR390SLL Peak\ track wgEncodeReg4Epigenetics_ENCFF163NMR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF921DIM ENCSR422ZAO Peak bigBed 5 SK-N-SH IRF3 peaks 4 2893 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/2b2acf89-5a73-4e44-a35b-50d80a23c772/ENCFF921DIM.bigBed\ labelFields none\ longLabel SK-N-SH IRF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR422ZAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF921DIM\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsCarotidDonor1_CNhs11087_ctss_fwd SmcCarotidD1+ bigWig Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_forward 0 2893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor1.CNhs11087.11285-116I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11285-116I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCarotidD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCarotidDonor1_CNhs11087_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor1_CNhs11087_tpm_fwd SmcCarotidD1+ bigWig Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_forward 1 2893 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor1.CNhs11087.11285-116I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11285-116I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCarotidD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCarotidDonor1_CNhs11087_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF834ZKF ENCSR390SLL Signal bigWig Left cardiac atrium tissue female adult 42 years ATAC signal 2 2894 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/ba1ebb43-4aa4-4d2c-8148-4ee3a55556c3/ENCFF834ZKF.bigWig\ color 2,199,185\ longLabel Left cardiac atrium tissue female adult 42 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR390SLL Signal\ track wgEncodeReg4Epigenetics_ENCFF834ZKF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF746KEC ENCSR422ZAO Signal bigWig SK-N-SH IRF3 ENCSR422ZAO signal 2 2894 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/b86e3773-6665-480d-9c86-15dccc807feb/ENCFF746KEC.bigWig\ color 155,155,18\ longLabel SK-N-SH IRF3 ENCSR422ZAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR422ZAO Signal\ track wgEncodeReg4TfChip_ENCFF746KEC\ type bigWig\ visibility full\ SmoothMuscleCellsCarotidDonor1_CNhs11087_ctss_rev SmcCarotidD1- bigWig Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_reverse 0 2894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor1.CNhs11087.11285-116I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11285-116I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCarotidD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCarotidDonor1_CNhs11087_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor1_CNhs11087_tpm_rev SmcCarotidD1- bigWig Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_reverse 1 2894 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor1.CNhs11087.11285-116I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Carotid, donor1_CNhs11087_11285-116I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11285-116I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCarotidD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCarotidDonor1_CNhs11087_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11285-116I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF837EJL ENCSR390UVH Peak bigBed 5 K562 treated with 2.5 μM Galeterone for 12 hours ATAC peak 4 2895 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/31e6550b-45b0-4751-8ae6-fda78935dfcb/ENCFF837EJL.bigBed\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 12 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR390UVH Peak\ track wgEncodeReg4Epigenetics_ENCFF837EJL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF118FCO ENCSR423FCW Peak bigBed 5 K562 RBM14 peaks 4 2895 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3769411f-e572-4e23-81a2-75c7e4171643/ENCFF118FCO.bigBed\ labelFields none\ longLabel K562 RBM14 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423FCW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF118FCO\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsCarotidDonor2_CNhs11986_ctss_fwd SmcCarotidD2+ bigWig Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_forward 0 2895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor2.CNhs11986.11362-117I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11362-117I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCarotidD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCarotidDonor2_CNhs11986_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor2_CNhs11986_tpm_fwd SmcCarotidD2+ bigWig Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_forward 1 2895 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor2.CNhs11986.11362-117I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11362-117I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCarotidD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCarotidDonor2_CNhs11986_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF628DWA ENCSR390UVH Signal bigWig K562 treated with 2.5 μM Galeterone for 12 hours ATAC signal 2 2896 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/8e9806c2-6944-4d18-95e1-7d0116fa95cd/ENCFF628DWA.bigWig\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 12 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR390UVH Signal\ track wgEncodeReg4Epigenetics_ENCFF628DWA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF449EAD ENCSR423FCW Signal bigWig K562 RBM14 ENCSR423FCW signal 2 2896 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d8bf0c58-848f-456a-9f84-17025b48f5b8/ENCFF449EAD.bigWig\ color 254,75,173\ longLabel K562 RBM14 ENCSR423FCW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423FCW Signal\ track wgEncodeReg4TfChip_ENCFF449EAD\ type bigWig\ visibility full\ SmoothMuscleCellsCarotidDonor2_CNhs11986_ctss_rev SmcCarotidD2- bigWig Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_reverse 0 2896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor2.CNhs11986.11362-117I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11362-117I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCarotidD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCarotidDonor2_CNhs11986_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor2_CNhs11986_tpm_rev SmcCarotidD2- bigWig Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_reverse 1 2896 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor2.CNhs11986.11362-117I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Carotid, donor2_CNhs11986_11362-117I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11362-117I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCarotidD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCarotidDonor2_CNhs11986_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11362-117I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF938PPI ENCSR391EQV Peak bigBed 5 Natural killer cell male adult 37 years H3K27ac peak 4 2897 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/bcbe2a9c-9feb-464f-a8fd-41ad81664dd6/ENCFF938PPI.bigBed\ color 181,145,0\ longLabel Natural killer cell male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391EQV Peak\ track wgEncodeReg4Epigenetics_ENCFF938PPI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF099ASU ENCSR423MQG Peak bigBed 5 Brain organoid male adult (53 years) CTCF peaks 4 2897 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/18/5532f395-bc7c-478f-9720-2137b7b4b813/ENCFF099ASU.bigBed\ labelFields none\ longLabel Brain organoid male adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423MQG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF099ASU\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsCarotidDonor3_CNhs12044_ctss_fwd SmcCarotidD3+ bigWig Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_forward 0 2897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor3.CNhs12044.11434-118H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11434-118H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCarotidD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCarotidDonor3_CNhs12044_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor3_CNhs12044_tpm_fwd SmcCarotidD3+ bigWig Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_forward 1 2897 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor3.CNhs12044.11434-118H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11434-118H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCarotidD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCarotidDonor3_CNhs12044_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF608XPJ ENCSR391EQV Signal bigWig Natural killer cell male adult 37 years H3K27ac signal 2 2898 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/67aead5a-500e-46be-b0a5-5b46d6d63fd5/ENCFF608XPJ.bigWig\ color 181,145,0\ longLabel Natural killer cell male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391EQV Signal\ track wgEncodeReg4Epigenetics_ENCFF608XPJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF065GAN ENCSR423MQG Signal bigWig Brain organoid male adult (53 years) CTCF ENCSR423MQG signal 2 2898 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/18/bc6dd2c9-06b1-4233-a4d2-e547bc4d3f97/ENCFF065GAN.bigWig\ color 155,155,18\ longLabel Brain organoid male adult (53 years) CTCF ENCSR423MQG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423MQG Signal\ track wgEncodeReg4TfChip_ENCFF065GAN\ type bigWig\ visibility full\ SmoothMuscleCellsCarotidDonor3_CNhs12044_ctss_rev SmcCarotidD3- bigWig Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_reverse 0 2898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor3.CNhs12044.11434-118H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11434-118H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCarotidD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCarotidDonor3_CNhs12044_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCarotidDonor3_CNhs12044_tpm_rev SmcCarotidD3- bigWig Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_reverse 1 2898 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Carotid%2c%20donor3.CNhs12044.11434-118H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Carotid, donor3_CNhs12044_11434-118H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11434-118H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCarotidD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCarotidDonor3_CNhs12044_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11434-118H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF634VUA ENCSR391NPE Peak bigBed 5 22Rv1 H3K27ac peak 4 2899 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/0c362cf8-333d-4a45-bc2d-df6aa82c4c2e/ENCFF634VUA.bigBed\ color 181,145,0\ longLabel 22Rv1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391NPE Peak\ track wgEncodeReg4Epigenetics_ENCFF634VUA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF352QVM ENCSR423RTK Peak bigBed 5 MCF-7 GATA3 peaks 4 2899 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4dfaa966-edc8-48dd-8074-e8367d1fcb5e/ENCFF352QVM.bigBed\ labelFields none\ longLabel MCF-7 GATA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423RTK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF352QVM\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsColonicDonor1_CNhs10868_ctss_fwd SmcColonicD1+ bigWig Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_forward 0 2899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor1.CNhs10868.11239-116D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11239-116D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor1_CNhs10868_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor1_CNhs10868_tpm_fwd SmcColonicD1+ bigWig Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_forward 1 2899 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor1.CNhs10868.11239-116D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11239-116D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor1_CNhs10868_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF206VZR ENCSR391NPE Signal bigWig 22Rv1 H3K27ac signal 2 2900 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/7c5acdf4-d5e9-4e3a-8b42-516e27778b99/ENCFF206VZR.bigWig\ color 181,145,0\ longLabel 22Rv1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391NPE Signal\ track wgEncodeReg4Epigenetics_ENCFF206VZR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF384CPN ENCSR423RTK Signal bigWig MCF-7 GATA3 ENCSR423RTK signal 2 2900 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/0160daeb-861f-473b-a39b-aa90ec56d6ef/ENCFF384CPN.bigWig\ color 65,171,173\ longLabel MCF-7 GATA3 ENCSR423RTK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423RTK Signal\ track wgEncodeReg4TfChip_ENCFF384CPN\ type bigWig\ visibility full\ SmoothMuscleCellsColonicDonor1_CNhs10868_ctss_rev SmcColonicD1- bigWig Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_reverse 0 2900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor1.CNhs10868.11239-116D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11239-116D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor1_CNhs10868_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor1_CNhs10868_tpm_rev SmcColonicD1- bigWig Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_reverse 1 2900 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor1.CNhs10868.11239-116D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor1_CNhs10868_11239-116D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11239-116D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor1_CNhs10868_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11239-116D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF444HXP ENCSR391YAV Peak bigBed 5 Sigmoid colon tissue male adult 54 years DNase peak 4 2901 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/03eb7a96-a09f-40cc-bca8-ff843a6d7e3d/ENCFF444HXP.bigBed\ color 6,218,147\ labelFields none\ longLabel Sigmoid colon tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391YAV Peak\ track wgEncodeReg4Epigenetics_ENCFF444HXP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF595WAL ENCSR423ZUM Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 2901 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/53ff29e5-777a-4fc9-b10e-86dc8e4b6aa2/ENCFF595WAL.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423ZUM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF595WAL\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsColonicDonor2_CNhs11963_ctss_fwd SmcColonicD2+ bigWig Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_forward 0 2901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor2.CNhs11963.11320-117D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11320-117D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor2_CNhs11963_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor2_CNhs11963_tpm_fwd SmcColonicD2+ bigWig Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_forward 1 2901 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor2.CNhs11963.11320-117D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11320-117D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor2_CNhs11963_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF028FLY ENCSR391YAV Signal bigWig Sigmoid colon tissue male adult 54 years DNase signal 2 2902 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/0db33731-320b-421f-9127-afde7266ebe7/ENCFF028FLY.bigWig\ color 6,218,147\ longLabel Sigmoid colon tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391YAV Signal\ track wgEncodeReg4Epigenetics_ENCFF028FLY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF111MOL ENCSR423ZUM Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR423ZUM signal 2 2902 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/84e9fa21-2ed7-4ce9-8a23-9406f2f519f7/ENCFF111MOL.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR423ZUM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR423ZUM Signal\ track wgEncodeReg4TfChip_ENCFF111MOL\ type bigWig\ visibility full\ SmoothMuscleCellsColonicDonor2_CNhs11963_ctss_rev SmcColonicD2- bigWig Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_reverse 0 2902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor2.CNhs11963.11320-117D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11320-117D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor2_CNhs11963_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor2_CNhs11963_tpm_rev SmcColonicD2- bigWig Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_reverse 1 2902 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor2.CNhs11963.11320-117D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor2_CNhs11963_11320-117D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11320-117D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor2_CNhs11963_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11320-117D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF849HUG ENCSR391ZKN Peak bigBed 5 Peyer's patch tissue female adult 51 years CTCF peak 4 2903 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/7977fa82-4d18-4ba1-8528-b2c44ba98b5f/ENCFF849HUG.bigBed\ color 0,176,240\ labelFields none\ longLabel Peyer's patch tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391ZKN Peak\ track wgEncodeReg4Epigenetics_ENCFF849HUG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF584AYC ENCSR426MDV Peak bigBed 5 K562 MIER1 peaks 4 2903 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a7fcf3d3-20b3-4ab6-a64b-c33557756c0d/ENCFF584AYC.bigBed\ labelFields none\ longLabel K562 MIER1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR426MDV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF584AYC\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_fwd SmcColonicD3+ bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward 0 2903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor3.CNhs12007.11396-118D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11396-118D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor3_CNhs12007_tpm_fwd SmcColonicD3+ bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward 1 2903 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor3.CNhs12007.11396-118D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11396-118D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsColonicDonor3_CNhs12007_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF715AGA ENCSR391ZKN Signal bigWig Peyer's patch tissue female adult 51 years CTCF signal 2 2904 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/67daca48-a961-4037-a349-5968c8d1f025/ENCFF715AGA.bigWig\ color 0,176,240\ longLabel Peyer's patch tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR391ZKN Signal\ track wgEncodeReg4Epigenetics_ENCFF715AGA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF313DTO ENCSR426MDV Signal bigWig K562 MIER1 ENCSR426MDV signal 2 2904 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/84aa9938-7f11-40e4-a2bb-80b803205a4b/ENCFF313DTO.bigWig\ color 254,75,173\ longLabel K562 MIER1 ENCSR426MDV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR426MDV Signal\ track wgEncodeReg4TfChip_ENCFF313DTO\ type bigWig\ visibility full\ SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_rev SmcColonicD3- bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_reverse 0 2904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor3.CNhs12007.11396-118D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11396-118D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcColonicD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor3_CNhs12007_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsColonicDonor3_CNhs12007_tpm_rev SmcColonicD3- bigWig Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_reverse 1 2904 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Colonic%2c%20donor3.CNhs12007.11396-118D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Colonic, donor3_CNhs12007_11396-118D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11396-118D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcColonicD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsColonicDonor3_CNhs12007_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11396-118D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF525QAW ENCSR392GCE Peak bigBed 5 Heart tissue male embryo 120 days DNase peak 4 2905 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/3f107798-453a-4d60-802a-0dad5cd09b78/ENCFF525QAW.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue male embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR392GCE Peak\ track wgEncodeReg4Epigenetics_ENCFF525QAW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF296NLF ENCSR426PTT Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO4 FOXO4 peaks 4 2905 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/bf40973c-fdfb-4fad-b942-be402df59af8/ENCFF296NLF.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO4 FOXO4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR426PTT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF296NLF\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_ctss_fwd SmcCoronaryArteryD1+ bigWig Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_forward 0 2905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor1.CNhs11088.11286-116I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11286-116I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCoronaryArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_tpm_fwd SmcCoronaryArteryD1+ bigWig Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_forward 1 2905 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor1.CNhs11088.11286-116I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11286-116I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCoronaryArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF238VZG ENCSR392GCE Signal bigWig Heart tissue male embryo 120 days DNase signal 2 2906 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/821587f5-d379-4456-9a70-4661306c7df5/ENCFF238VZG.bigWig\ color 6,218,147\ longLabel Heart tissue male embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR392GCE Signal\ track wgEncodeReg4Epigenetics_ENCFF238VZG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF786KED ENCSR426PTT Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO4 FOXO4 ENCSR426PTT signal 2 2906 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/3c13ba8b-8fae-4f36-9a9b-d55863f44193/ENCFF786KED.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXO4 FOXO4 ENCSR426PTT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR426PTT Signal\ track wgEncodeReg4TfChip_ENCFF786KED\ type bigWig\ visibility full\ SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_ctss_rev SmcCoronaryArteryD1- bigWig Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_reverse 0 2906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor1.CNhs11088.11286-116I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11286-116I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCoronaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_tpm_rev SmcCoronaryArteryD1- bigWig Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_reverse 1 2906 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor1.CNhs11088.11286-116I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Coronary Artery, donor1_CNhs11088_11286-116I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11286-116I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCoronaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCoronaryArteryDonor1_CNhs11088_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11286-116I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF117BJT ENCSR392UJM Peak bigBed 5 Ovary tissue female adult 61 years ATAC peak 4 2907 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/30a62e2f-8a3b-4049-8944-075becf2a858/ENCFF117BJT.bigBed\ color 2,199,185\ longLabel Ovary tissue female adult 61 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR392UJM Peak\ track wgEncodeReg4Epigenetics_ENCFF117BJT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF583EEH ENCSR426URK Peak bigBed 5 K562 AFF1 peaks 4 2907 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9c39f412-cff1-4dd7-aa6c-50f4f5dfd426/ENCFF583EEH.bigBed\ labelFields none\ longLabel K562 AFF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR426URK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF583EEH\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_ctss_fwd SmcCoronaryArteryD2+ bigWig Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_forward 0 2907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor2.CNhs11987.11363-117I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11363-117I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCoronaryArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_tpm_fwd SmcCoronaryArteryD2+ bigWig Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_forward 1 2907 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor2.CNhs11987.11363-117I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11363-117I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCoronaryArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF187FSZ ENCSR392UJM Signal bigWig Ovary tissue female adult 61 years ATAC signal 2 2908 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/2cff01d8-70f2-4369-971f-3d60ef924f77/ENCFF187FSZ.bigWig\ color 2,199,185\ longLabel Ovary tissue female adult 61 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR392UJM Signal\ track wgEncodeReg4Epigenetics_ENCFF187FSZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF085LMT ENCSR426URK Signal bigWig K562 AFF1 ENCSR426URK signal 2 2908 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/65f3e88a-5216-4406-a0c8-cb81563b07e4/ENCFF085LMT.bigWig\ color 254,75,173\ longLabel K562 AFF1 ENCSR426URK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR426URK Signal\ track wgEncodeReg4TfChip_ENCFF085LMT\ type bigWig\ visibility full\ SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_ctss_rev SmcCoronaryArteryD2- bigWig Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_reverse 0 2908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor2.CNhs11987.11363-117I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11363-117I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCoronaryArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_tpm_rev SmcCoronaryArteryD2- bigWig Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_reverse 1 2908 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor2.CNhs11987.11363-117I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Coronary Artery, donor2_CNhs11987_11363-117I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11363-117I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCoronaryArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCoronaryArteryDonor2_CNhs11987_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11363-117I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF848BOT ENCSR392YGP Peak bigBed 5 Effector memory CD8-positive, alpha-beta T cell male adult 33 years ATAC peak 4 2909 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/4d5d9040-ed30-42a6-aecd-89043d8d9260/ENCFF848BOT.bigBed\ color 2,199,185\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 33 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR392YGP Peak\ track wgEncodeReg4Epigenetics_ENCFF848BOT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF198JJP ENCSR427BBI Peak bigBed 5 MCF-7 MLLT1 peaks 4 2909 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/3fe3dfb2-1179-4126-b3b9-68515ca6de1f/ENCFF198JJP.bigBed\ labelFields none\ longLabel MCF-7 MLLT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR427BBI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF198JJP\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_ctss_fwd SmcCoronaryArteryD3+ bigWig Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_forward 0 2909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor3.CNhs12045.11435-118H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11435-118H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCoronaryArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_tpm_fwd SmcCoronaryArteryD3+ bigWig Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_forward 1 2909 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor3.CNhs12045.11435-118H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11435-118H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCoronaryArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF428KAK ENCSR392YGP Signal bigWig Effector memory CD8-positive, alpha-beta T cell male adult 33 years ATAC signal 2 2910 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/260636d9-c117-4c6c-8666-e7fbc71248e9/ENCFF428KAK.bigWig\ color 2,199,185\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 33 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR392YGP Signal\ track wgEncodeReg4Epigenetics_ENCFF428KAK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF405OYO ENCSR427BBI Signal bigWig MCF-7 MLLT1 ENCSR427BBI signal 2 2910 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/83ab12b2-17c7-4970-a167-3430f26ac165/ENCFF405OYO.bigWig\ color 65,171,173\ longLabel MCF-7 MLLT1 ENCSR427BBI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR427BBI Signal\ track wgEncodeReg4TfChip_ENCFF405OYO\ type bigWig\ visibility full\ SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_ctss_rev SmcCoronaryArteryD3- bigWig Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_reverse 0 2910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor3.CNhs12045.11435-118H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11435-118H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcCoronaryArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_tpm_rev SmcCoronaryArteryD3- bigWig Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_reverse 1 2910 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Coronary%20Artery%2c%20donor3.CNhs12045.11435-118H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Coronary Artery, donor3_CNhs12045_11435-118H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11435-118H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcCoronaryArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsCoronaryArteryDonor3_CNhs12045_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11435-118H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF637VWP ENCSR393SYU Peak bigBed 5 Neutrophil H3K4me3 peak 4 2911 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/7ae6c389-4df2-4c42-8f0c-e53d5ac618f7/ENCFF637VWP.bigBed\ color 255,0,0\ longLabel Neutrophil H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR393SYU Peak\ track wgEncodeReg4Epigenetics_ENCFF637VWP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF554TVF ENCSR427WZJ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 peaks 4 2911 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/40ad743d-7aff-41c2-9b7d-ef22bf530545/ENCFF554TVF.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR427WZJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF554TVF\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsEsophagealDonor1_CNhs11324_ctss_fwd SmcEsophagealD1+ bigWig Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_forward 0 2911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor1.CNhs11324.11508-119G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11508-119G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcEsophagealD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsEsophagealDonor1_CNhs11324_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsEsophagealDonor1_CNhs11324_tpm_fwd SmcEsophagealD1+ bigWig Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_forward 1 2911 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor1.CNhs11324.11508-119G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11508-119G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcEsophagealD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsEsophagealDonor1_CNhs11324_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF685DZI ENCSR393SYU Signal bigWig Neutrophil H3K4me3 signal 2 2912 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/394632a4-c95f-4bd2-8f2f-16b558e237c0/ENCFF685DZI.bigWig\ color 255,0,0\ longLabel Neutrophil H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR393SYU Signal\ track wgEncodeReg4Epigenetics_ENCFF685DZI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF594FWL ENCSR427WZJ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 ENCSR427WZJ signal 2 2912 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/2e864dea-ec3b-4b88-93d7-a52b8d60297b/ENCFF594FWL.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF143 ZNF143 ENCSR427WZJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR427WZJ Signal\ track wgEncodeReg4TfChip_ENCFF594FWL\ type bigWig\ visibility full\ SmoothMuscleCellsEsophagealDonor1_CNhs11324_ctss_rev SmcEsophagealD1- bigWig Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_reverse 0 2912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor1.CNhs11324.11508-119G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11508-119G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcEsophagealD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsEsophagealDonor1_CNhs11324_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsEsophagealDonor1_CNhs11324_tpm_rev SmcEsophagealD1- bigWig Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_reverse 1 2912 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor1.CNhs11324.11508-119G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Esophageal, donor1_CNhs11324_11508-119G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11508-119G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcEsophagealD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsEsophagealDonor1_CNhs11324_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11508-119G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF307IFQ ENCSR394JFQ Peak bigBed 5 Immature natural killer cell H3K4me3 peak 4 2913 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/de4b79fd-6fd2-47d2-bc66-f0ddf38025b7/ENCFF307IFQ.bigBed\ color 255,0,0\ longLabel Immature natural killer cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR394JFQ Peak\ track wgEncodeReg4Epigenetics_ENCFF307IFQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF410RHW ENCSR428BKN Peak bigBed 5 Gastrocnemius medialis tissue female adult (53 years) CTCF peaks 4 2913 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/81d1ec81-fef2-4adc-ba03-26e3355ed89c/ENCFF410RHW.bigBed\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR428BKN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF410RHW\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsEsophagealDonor2_CNhs12727_ctss_fwd SmcEsophagealD2+ bigWig Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_forward 0 2913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor2.CNhs12727.11588-120G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11588-120G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcEsophagealD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsEsophagealDonor2_CNhs12727_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsEsophagealDonor2_CNhs12727_tpm_fwd SmcEsophagealD2+ bigWig Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_forward 1 2913 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor2.CNhs12727.11588-120G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11588-120G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcEsophagealD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsEsophagealDonor2_CNhs12727_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF222VSV ENCSR394JFQ Signal bigWig Immature natural killer cell H3K4me3 signal 2 2914 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/313dcb45-f08a-4168-983a-e305475d4934/ENCFF222VSV.bigWig\ color 255,0,0\ longLabel Immature natural killer cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR394JFQ Signal\ track wgEncodeReg4Epigenetics_ENCFF222VSV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF055HAN ENCSR428BKN Signal bigWig Gastrocnemius medialis tissue female adult (53 years) CTCF ENCSR428BKN signal 2 2914 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a23e07cf-2b40-40b5-a19f-9597f06d3383/ENCFF055HAN.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue female adult (53 years) CTCF ENCSR428BKN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR428BKN Signal\ track wgEncodeReg4TfChip_ENCFF055HAN\ type bigWig\ visibility full\ SmoothMuscleCellsEsophagealDonor2_CNhs12727_ctss_rev SmcEsophagealD2- bigWig Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_reverse 0 2914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor2.CNhs12727.11588-120G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11588-120G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcEsophagealD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsEsophagealDonor2_CNhs12727_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsEsophagealDonor2_CNhs12727_tpm_rev SmcEsophagealD2- bigWig Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_reverse 1 2914 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Esophageal%2c%20donor2.CNhs12727.11588-120G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Esophageal, donor2_CNhs12727_11588-120G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11588-120G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcEsophagealD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsEsophagealDonor2_CNhs12727_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11588-120G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF557PFX ENCSR395EZY Peak bigBed 5 Placenta tissue male embryo DNase peak 4 2915 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/afd8dc18-9c8c-462c-9e61-c5145de5e674/ENCFF557PFX.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR395EZY Peak\ track wgEncodeReg4Epigenetics_ENCFF557PFX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF784AAE ENCSR428LOB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3 ZZZ3 peaks 4 2915 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d269459f-38a8-42c1-9177-ff814d4bfc14/ENCFF784AAE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3 ZZZ3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR428LOB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF784AAE\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_ctss_fwd SmcInternalThoracicArteryD1+ bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_forward 0 2915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor1.CNhs11067.11287-116I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11287-116I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcInternalThoracicArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_tpm_fwd SmcInternalThoracicArteryD1+ bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_forward 1 2915 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor1.CNhs11067.11287-116I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11287-116I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcInternalThoracicArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF556ECX ENCSR395EZY Signal bigWig Placenta tissue male embryo DNase signal 2 2916 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/e528d0e8-f8ba-4662-91c4-79bf678f475c/ENCFF556ECX.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR395EZY Signal\ track wgEncodeReg4Epigenetics_ENCFF556ECX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF599UAF ENCSR428LOB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3 ZZZ3 ENCSR428LOB signal 2 2916 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/f775f13c-5191-4615-9586-3a98734942d4/ENCFF599UAF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZZZ3 ZZZ3 ENCSR428LOB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR428LOB Signal\ track wgEncodeReg4TfChip_ENCFF599UAF\ type bigWig\ visibility full\ SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_ctss_rev SmcInternalThoracicArteryD1- bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_reverse 0 2916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor1.CNhs11067.11287-116I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11287-116I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcInternalThoracicArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_tpm_rev SmcInternalThoracicArteryD1- bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_reverse 1 2916 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor1.CNhs11067.11287-116I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor1_CNhs11067_11287-116I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11287-116I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcInternalThoracicArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsInternalThoracicArteryDonor1_CNhs11067_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11287-116I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF484GHQ ENCSR395HAE Peak bigBed 5 Heart left ventricle tissue female adult 59 years DNase peak 4 2917 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/f51260c9-e139-4066-90fa-aaa4a419acaf/ENCFF484GHQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart left ventricle tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR395HAE Peak\ track wgEncodeReg4Epigenetics_ENCFF484GHQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF258CAS ENCSR429JTR Peak bigBed 5 Transverse colon tissue male adult (37 years) EP300 peaks 4 2917 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/8a5763fe-910b-4731-b60a-145ec6775d97/ENCFF258CAS.bigBed\ labelFields none\ longLabel Transverse colon tissue male adult (37 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR429JTR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF258CAS\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_ctss_fwd SmcInternalThoracicArteryD2+ bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_forward 0 2917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor2.CNhs11988.11364-117I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11364-117I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcInternalThoracicArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_tpm_fwd SmcInternalThoracicArteryD2+ bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_forward 1 2917 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor2.CNhs11988.11364-117I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11364-117I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcInternalThoracicArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF414ADM ENCSR395HAE Signal bigWig Heart left ventricle tissue female adult 59 years DNase signal 2 2918 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/6cf84fc0-7c87-4988-9da0-1954fa3e5343/ENCFF414ADM.bigWig\ color 6,218,147\ longLabel Heart left ventricle tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR395HAE Signal\ track wgEncodeReg4Epigenetics_ENCFF414ADM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF540GPN ENCSR429JTR Signal bigWig Transverse colon tissue male adult (37 years) EP300 ENCSR429JTR signal 2 2918 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/75ac6fd8-1ac3-4e50-a849-2e6d6bad7cca/ENCFF540GPN.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (37 years) EP300 ENCSR429JTR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR429JTR Signal\ track wgEncodeReg4TfChip_ENCFF540GPN\ type bigWig\ visibility full\ SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_ctss_rev SmcInternalThoracicArteryD2- bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_reverse 0 2918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor2.CNhs11988.11364-117I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11364-117I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcInternalThoracicArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_tpm_rev SmcInternalThoracicArteryD2- bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_reverse 1 2918 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor2.CNhs11988.11364-117I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor2_CNhs11988_11364-117I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11364-117I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcInternalThoracicArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsInternalThoracicArteryDonor2_CNhs11988_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11364-117I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF604AFM ENCSR395YXN Peak bigBed 5 T-cell male adult 37 years H3K4me3 peak 4 2919 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a36a347f-da02-4d2c-922f-e0e7acc93a06/ENCFF604AFM.bigBed\ color 255,0,0\ longLabel T-cell male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR395YXN Peak\ track wgEncodeReg4Epigenetics_ENCFF604AFM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF255RHV ENCSR429QPP Peak bigBed 5 K562 FOXM1 peaks 4 2919 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/afd11611-8ee2-4995-bc2a-55e5852765fb/ENCFF255RHV.bigBed\ labelFields none\ longLabel K562 FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR429QPP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF255RHV\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_ctss_fwd SmcInternalThoracicArteryD3+ bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_forward 0 2919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor3.CNhs12046.11436-118H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11436-118H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcInternalThoracicArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_tpm_fwd SmcInternalThoracicArteryD3+ bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_forward 1 2919 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor3.CNhs12046.11436-118H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11436-118H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcInternalThoracicArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF540TKM ENCSR395YXN Signal bigWig T-cell male adult 37 years H3K4me3 signal 2 2920 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/309117c0-7e7e-40f8-8b6b-dc7a09169685/ENCFF540TKM.bigWig\ color 255,0,0\ longLabel T-cell male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR395YXN Signal\ track wgEncodeReg4Epigenetics_ENCFF540TKM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF762JVU ENCSR429QPP Signal bigWig K562 FOXM1 ENCSR429QPP signal 2 2920 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a64841af-9cb7-4207-bb12-63d84af9af76/ENCFF762JVU.bigWig\ color 254,75,173\ longLabel K562 FOXM1 ENCSR429QPP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR429QPP Signal\ track wgEncodeReg4TfChip_ENCFF762JVU\ type bigWig\ visibility full\ SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_ctss_rev SmcInternalThoracicArteryD3- bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_reverse 0 2920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor3.CNhs12046.11436-118H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11436-118H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcInternalThoracicArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_tpm_rev SmcInternalThoracicArteryD3- bigWig Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_reverse 1 2920 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Internal%20Thoracic%20Artery%2c%20donor3.CNhs12046.11436-118H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Internal Thoracic Artery, donor3_CNhs12046_11436-118H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11436-118H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcInternalThoracicArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsInternalThoracicArteryDonor3_CNhs12046_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11436-118H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF383WCH ENCSR396EWH Peak bigBed 5 Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase peak 4 2921 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/51f074ae-ddf2-4273-8710-418f34f8d2ec/ENCFF383WCH.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR396EWH Peak\ track wgEncodeReg4Epigenetics_ENCFF383WCH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF059WCS ENCSR429XTR Peak bigBed 5 K562 TARDBP peaks 4 2921 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a7e23a54-1dc3-4b4b-b0d3-08c388bed229/ENCFF059WCS.bigBed\ labelFields none\ longLabel K562 TARDBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR429XTR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF059WCS\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsIntestinalDonor1_CNhs12595_ctss_fwd SmcIntestinalD1+ bigWig Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_forward 0 2921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Intestinal%2c%20donor1.CNhs12595.11509-119G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11509-119G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcIntestinalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsIntestinalDonor1_CNhs12595_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsIntestinalDonor1_CNhs12595_tpm_fwd SmcIntestinalD1+ bigWig Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_forward 1 2921 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Intestinal%2c%20donor1.CNhs12595.11509-119G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11509-119G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcIntestinalD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsIntestinalDonor1_CNhs12595_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF229FLG ENCSR396EWH Signal bigWig Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase signal 2 2922 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f50f73ca-0bf2-4b3a-bfd1-82b19485754d/ENCFF229FLG.bigWig\ color 6,218,147\ longLabel Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR396EWH Signal\ track wgEncodeReg4Epigenetics_ENCFF229FLG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF499TQE ENCSR429XTR Signal bigWig K562 TARDBP ENCSR429XTR signal 2 2922 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/7983821f-27da-4f63-9a73-20443736d7ef/ENCFF499TQE.bigWig\ color 254,75,173\ longLabel K562 TARDBP ENCSR429XTR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR429XTR Signal\ track wgEncodeReg4TfChip_ENCFF499TQE\ type bigWig\ visibility full\ SmoothMuscleCellsIntestinalDonor1_CNhs12595_ctss_rev SmcIntestinalD1- bigWig Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_reverse 0 2922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Intestinal%2c%20donor1.CNhs12595.11509-119G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11509-119G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcIntestinalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsIntestinalDonor1_CNhs12595_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsIntestinalDonor1_CNhs12595_tpm_rev SmcIntestinalD1- bigWig Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_reverse 1 2922 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Intestinal%2c%20donor1.CNhs12595.11509-119G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Intestinal, donor1_CNhs12595_11509-119G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11509-119G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcIntestinalD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsIntestinalDonor1_CNhs12595_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11509-119G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF268UCI ENCSR396RXX Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 20 years H3K27ac peak 4 2923 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d607efc3-da63-42e7-b3af-8427fa2ede5c/ENCFF268UCI.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta T cell male adult 20 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR396RXX Peak\ track wgEncodeReg4Epigenetics_ENCFF268UCI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF476INC ENCSR430JGJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRB THRB peaks 4 2923 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/0ec119c7-f28a-44e0-91d5-e1ba08e23441/ENCFF476INC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRB THRB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR430JGJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF476INC\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsProstateDonor1_CNhs11920_ctss_fwd SmcProstateD1+ bigWig Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward 0 2923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor1.CNhs11920.11257-116F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11257-116F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor1_CNhs11920_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor1_CNhs11920_tpm_fwd SmcProstateD1+ bigWig Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward 1 2923 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor1.CNhs11920.11257-116F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11257-116F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor1_CNhs11920_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF427RME ENCSR396RXX Signal bigWig CD4-positive, alpha-beta T cell male adult 20 years H3K27ac signal 2 2924 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/6620c7c1-509f-44ac-86ec-7f620df63365/ENCFF427RME.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta T cell male adult 20 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR396RXX Signal\ track wgEncodeReg4Epigenetics_ENCFF427RME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF713AVR ENCSR430JGJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRB THRB ENCSR430JGJ signal 2 2924 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4a1d9648-222f-4c69-be3d-5dc94add65a5/ENCFF713AVR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRB THRB ENCSR430JGJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR430JGJ Signal\ track wgEncodeReg4TfChip_ENCFF713AVR\ type bigWig\ visibility full\ SmoothMuscleCellsProstateDonor1_CNhs11920_ctss_rev SmcProstateD1- bigWig Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_reverse 0 2924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor1.CNhs11920.11257-116F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11257-116F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor1_CNhs11920_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor1_CNhs11920_tpm_rev SmcProstateD1- bigWig Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_reverse 1 2924 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor1.CNhs11920.11257-116F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor1_CNhs11920_11257-116F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11257-116F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor1_CNhs11920_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11257-116F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF442DUZ ENCSR396ZIN Peak bigBed 5 T-cell female adult 35 years DNase peak 4 2925 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e498143d-8d76-4eae-b0d6-479c603f783c/ENCFF442DUZ.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 35 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR396ZIN Peak\ track wgEncodeReg4Epigenetics_ENCFF442DUZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF853JKX ENCSR430YRJ Peak bigBed 5 KMS-11 CTCF peaks 4 2925 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/4326b7ce-8398-4cd2-8d40-ef06ea808ca9/ENCFF853JKX.bigBed\ labelFields none\ longLabel KMS-11 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR430YRJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF853JKX\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_fwd SmcProstateD2+ bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward 0 2925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_fwd SmcProstateD2+ bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward 1 2925 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF011IOW ENCSR396ZIN Signal bigWig T-cell female adult 35 years DNase signal 2 2926 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/061e4e32-a866-4792-a002-6f174845292e/ENCFF011IOW.bigWig\ color 6,218,147\ longLabel T-cell female adult 35 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR396ZIN Signal\ track wgEncodeReg4Epigenetics_ENCFF011IOW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF650WNL ENCSR430YRJ Signal bigWig KMS-11 CTCF ENCSR430YRJ signal 2 2926 121 147 150 188 201 202 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/fa716651-aefa-47d2-877d-1fbf082782fa/ENCFF650WNL.bigWig\ color 121,147,150\ longLabel KMS-11 CTCF ENCSR430YRJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR430YRJ Signal\ track wgEncodeReg4TfChip_ENCFF650WNL\ type bigWig\ visibility full\ SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_rev SmcProstateD2- bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse 0 2926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor2_CNhs11976_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_rev SmcProstateD2- bigWig Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse 1 2926 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor2.CNhs11976.11335-117F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor2_CNhs11976_11335-117F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11335-117F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor2_CNhs11976_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11335-117F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF924QWP ENCSR397NQK Peak bigBed 5 Basal cell carcinoma skin epidermis tissue male adult 65 years H3K27ac peak 4 2927 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/68aba1f3-81bd-4935-a266-4c1a3de94796/ENCFF924QWP.bigBed\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 65 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR397NQK Peak\ track wgEncodeReg4Epigenetics_ENCFF924QWP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF661AMI ENCSR431EHE Peak bigBed 5 Sigmoid colon tissue male adult (37 years) POLR2A peaks 4 2927 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/6322f395-127e-4a0a-8f96-e93049b23913/ENCFF661AMI.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431EHE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF661AMI\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsProstateDonor3_CNhs11910_ctss_fwd SmcProstateD3+ bigWig Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward 0 2927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor3.CNhs11910.11465-119B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11465-119B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor3_CNhs11910_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor3_CNhs11910_tpm_fwd SmcProstateD3+ bigWig Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward 1 2927 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor3.CNhs11910.11465-119B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11465-119B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsProstateDonor3_CNhs11910_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF906LLL ENCSR397NQK Signal bigWig Basal cell carcinoma skin epidermis tissue male adult 65 years H3K27ac signal 2 2928 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/48dab5b7-4443-45f8-af15-2583e82c3342/ENCFF906LLL.bigWig\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 65 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR397NQK Signal\ track wgEncodeReg4Epigenetics_ENCFF906LLL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF611UNB ENCSR431EHE Signal bigWig Sigmoid colon tissue male adult (37 years) POLR2A ENCSR431EHE signal 2 2928 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/0ccf493e-37b6-4916-a9df-8f62196da91d/ENCFF611UNB.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (37 years) POLR2A ENCSR431EHE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431EHE Signal\ track wgEncodeReg4TfChip_ENCFF611UNB\ type bigWig\ visibility full\ SmoothMuscleCellsProstateDonor3_CNhs11910_ctss_rev SmcProstateD3- bigWig Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_reverse 0 2928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor3.CNhs11910.11465-119B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11465-119B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcProstateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor3_CNhs11910_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsProstateDonor3_CNhs11910_tpm_rev SmcProstateD3- bigWig Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_reverse 1 2928 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Prostate%2c%20donor3.CNhs11910.11465-119B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Prostate, donor3_CNhs11910_11465-119B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11465-119B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcProstateD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsProstateDonor3_CNhs11910_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11465-119B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF545DGR ENCSR398CXD Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 24 years DNase peak 4 2929 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/da83f32c-c3b6-4fce-a43c-f7b4c5e24bcc/ENCFF545DGR.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398CXD Peak\ track wgEncodeReg4Epigenetics_ENCFF545DGR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF615GUT ENCSR431FOF Peak bigBed 5 HepG2 CHD4 peaks 4 2929 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/91056262-b490-49c5-8a80-01a6ba268576/ENCFF615GUT.bigBed\ labelFields none\ longLabel HepG2 CHD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431FOF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF615GUT\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_ctss_fwd SmcPulmonaryArteryD1+ bigWig Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_forward 0 2929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor1.CNhs11089.11288-117A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11288-117A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcPulmonaryArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_tpm_fwd SmcPulmonaryArteryD1+ bigWig Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_forward 1 2929 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor1.CNhs11089.11288-117A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11288-117A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcPulmonaryArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF408JGY ENCSR398CXD Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 24 years DNase signal 2 2930 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/e28627e3-0e78-4bcc-8418-842ce794ae31/ENCFF408JGY.bigWig\ color 6,218,147\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398CXD Signal\ track wgEncodeReg4Epigenetics_ENCFF408JGY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF711QFA ENCSR431FOF Signal bigWig HepG2 CHD4 ENCSR431FOF signal 2 2930 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/c692fcd1-4730-4609-8fab-95fbcd64f319/ENCFF711QFA.bigWig\ color 137,152,82\ longLabel HepG2 CHD4 ENCSR431FOF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431FOF Signal\ track wgEncodeReg4TfChip_ENCFF711QFA\ type bigWig\ visibility full\ SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_ctss_rev SmcPulmonaryArteryD1- bigWig Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_reverse 0 2930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor1.CNhs11089.11288-117A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11288-117A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcPulmonaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_tpm_rev SmcPulmonaryArteryD1- bigWig Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_reverse 1 2930 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor1.CNhs11089.11288-117A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor1_CNhs11089_11288-117A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11288-117A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcPulmonaryArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsPulmonaryArteryDonor1_CNhs11089_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11288-117A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF890VKL ENCSR398JUP Peak bigBed 5 Ureter tissue female adult 47 years DNase peak 4 2931 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/fb814b87-b339-44b6-ac6b-d1ab08f70746/ENCFF890VKL.bigBed\ color 6,218,147\ labelFields none\ longLabel Ureter tissue female adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398JUP Peak\ track wgEncodeReg4Epigenetics_ENCFF890VKL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF251BPG ENCSR431LRW Peak bigBed 5 A549 JUNB peaks 4 2931 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/b5ddeba8-7b03-468a-96b6-55863c09786c/ENCFF251BPG.bigBed\ labelFields none\ longLabel A549 JUNB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431LRW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF251BPG\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_ctss_fwd SmcPulmonaryArteryD2+ bigWig Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_forward 0 2931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor2.CNhs11989.11365-117I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11365-117I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcPulmonaryArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_tpm_fwd SmcPulmonaryArteryD2+ bigWig Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_forward 1 2931 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor2.CNhs11989.11365-117I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11365-117I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcPulmonaryArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF770ONG ENCSR398JUP Signal bigWig Ureter tissue female adult 47 years DNase signal 2 2932 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/0bc8ff4c-f324-427e-8fdf-c4aeaba9472f/ENCFF770ONG.bigWig\ color 6,218,147\ longLabel Ureter tissue female adult 47 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398JUP Signal\ track wgEncodeReg4Epigenetics_ENCFF770ONG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF949SGB ENCSR431LRW Signal bigWig A549 JUNB ENCSR431LRW signal 2 2932 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/56033fe8-dbc6-4353-ba07-3aac8835e314/ENCFF949SGB.bigWig\ color 130,163,45\ longLabel A549 JUNB ENCSR431LRW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431LRW Signal\ track wgEncodeReg4TfChip_ENCFF949SGB\ type bigWig\ visibility full\ SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_ctss_rev SmcPulmonaryArteryD2- bigWig Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_reverse 0 2932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor2.CNhs11989.11365-117I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11365-117I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcPulmonaryArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_tpm_rev SmcPulmonaryArteryD2- bigWig Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_reverse 1 2932 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor2.CNhs11989.11365-117I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor2_CNhs11989_11365-117I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11365-117I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcPulmonaryArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsPulmonaryArteryDonor2_CNhs11989_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11365-117I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF602KUC ENCSR398QLU Peak bigBed 5 CD8-positive, alpha-beta memory T cell H3K27ac peak 4 2933 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/97515656-8342-4753-8b21-619a7a6fd22c/ENCFF602KUC.bigBed\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398QLU Peak\ track wgEncodeReg4Epigenetics_ENCFF602KUC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF890MHF ENCSR431TLD Peak bigBed 5 MCF-7 SMARCE1 peaks 4 2933 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3781b0cf-c3cd-4990-9453-15445dab46a2/ENCFF890MHF.bigBed\ labelFields none\ longLabel MCF-7 SMARCE1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431TLD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF890MHF\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_ctss_fwd SmcPulmonaryArteryD3+ bigWig Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_forward 0 2933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor3.CNhs12047.11437-118H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11437-118H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcPulmonaryArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_tpm_fwd SmcPulmonaryArteryD3+ bigWig Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_forward 1 2933 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor3.CNhs12047.11437-118H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11437-118H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcPulmonaryArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF310XQG ENCSR398QLU Signal bigWig CD8-positive, alpha-beta memory T cell H3K27ac signal 2 2934 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/4c011085-e031-438e-bc90-c543e1036cce/ENCFF310XQG.bigWig\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398QLU Signal\ track wgEncodeReg4Epigenetics_ENCFF310XQG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF312SND ENCSR431TLD Signal bigWig MCF-7 SMARCE1 ENCSR431TLD signal 2 2934 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e9022647-fa8a-4360-acc0-9340933a7297/ENCFF312SND.bigWig\ color 65,171,173\ longLabel MCF-7 SMARCE1 ENCSR431TLD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431TLD Signal\ track wgEncodeReg4TfChip_ENCFF312SND\ type bigWig\ visibility full\ SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_ctss_rev SmcPulmonaryArteryD3- bigWig Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse 0 2934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor3.CNhs12047.11437-118H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11437-118H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcPulmonaryArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_tpm_rev SmcPulmonaryArteryD3- bigWig Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse 1 2934 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Pulmonary%20Artery%2c%20donor3.CNhs12047.11437-118H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Pulmonary Artery, donor3_CNhs12047_11437-118H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11437-118H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcPulmonaryArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsPulmonaryArteryDonor3_CNhs12047_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11437-118H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF471YCZ ENCSR398RET Peak bigBed 5 Endodermal cell CTCF peak 4 2935 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/bdb270e2-b3ef-4aec-bdac-5b596b9bd9a7/ENCFF471YCZ.bigBed\ color 0,176,240\ labelFields none\ longLabel Endodermal cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398RET Peak\ track wgEncodeReg4Epigenetics_ENCFF471YCZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF414HHT ENCSR431XGJ Peak bigBed 5 K562 PYGO2 peaks 4 2935 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/a0e219d1-e566-4397-8784-eaf41eb1b9bd/ENCFF414HHT.bigBed\ labelFields none\ longLabel K562 PYGO2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431XGJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF414HHT\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_ctss_fwd SmcSubclavianArteryD1+ bigWig Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_forward 0 2935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor1.CNhs11090.11289-117A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11289-117A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_tpm_fwd SmcSubclavianArteryD1+ bigWig Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_forward 1 2935 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor1.CNhs11090.11289-117A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11289-117A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcSubclavianArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF976GAM ENCSR398RET Signal bigWig Endodermal cell CTCF signal 2 2936 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/da4b751c-dae2-41f9-be5d-b776077f5961/ENCFF976GAM.bigWig\ color 0,176,240\ longLabel Endodermal cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR398RET Signal\ track wgEncodeReg4Epigenetics_ENCFF976GAM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF066QHQ ENCSR431XGJ Signal bigWig K562 PYGO2 ENCSR431XGJ signal 2 2936 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/fbf619c0-523c-4de5-b676-bbc3bd75cdab/ENCFF066QHQ.bigWig\ color 254,75,173\ longLabel K562 PYGO2 ENCSR431XGJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR431XGJ Signal\ track wgEncodeReg4TfChip_ENCFF066QHQ\ type bigWig\ visibility full\ SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_ctss_rev SmcSubclavianArteryD1- bigWig Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_reverse 0 2936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor1.CNhs11090.11289-117A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11289-117A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_tpm_rev SmcSubclavianArteryD1- bigWig Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_reverse 1 2936 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor1.CNhs11090.11289-117A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor1_CNhs11090_11289-117A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11289-117A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcSubclavianArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor1_CNhs11090_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11289-117A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF784DTK ENCSR399OSE Peak bigBed 5 Heart left ventricle tissue female adult 47 years ATAC peak 4 2937 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/806b3b8f-a914-4304-8227-fd645d61791f/ENCFF784DTK.bigBed\ color 2,199,185\ longLabel Heart left ventricle tissue female adult 47 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR399OSE Peak\ track wgEncodeReg4Epigenetics_ENCFF784DTK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF979LRR ENCSR432GAO Peak bigBed 5 Thyroid gland tissue female adult (51 years) POLR2A peaks 4 2937 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/5ee1d291-2f2f-429c-ac47-6ec0dd880b42/ENCFF979LRR.bigBed\ labelFields none\ longLabel Thyroid gland tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR432GAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF979LRR\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_ctss_fwd SmcSubclavianArteryD2+ bigWig Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_forward 0 2937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor2.CNhs11990.11366-117I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11366-117I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_tpm_fwd SmcSubclavianArteryD2+ bigWig Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_forward 1 2937 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor2.CNhs11990.11366-117I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11366-117I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcSubclavianArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF016KCE ENCSR399OSE Signal bigWig Heart left ventricle tissue female adult 47 years ATAC signal 2 2938 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/413d170c-7480-4ee8-9ac4-036975d7c23b/ENCFF016KCE.bigWig\ color 2,199,185\ longLabel Heart left ventricle tissue female adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR399OSE Signal\ track wgEncodeReg4Epigenetics_ENCFF016KCE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF693TUJ ENCSR432GAO Signal bigWig Thyroid gland tissue female adult (51 years) POLR2A ENCSR432GAO signal 2 2938 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3e4ad547-c163-4991-8d3f-252fb9afa185/ENCFF693TUJ.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (51 years) POLR2A ENCSR432GAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR432GAO Signal\ track wgEncodeReg4TfChip_ENCFF693TUJ\ type bigWig\ visibility full\ SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_ctss_rev SmcSubclavianArteryD2- bigWig Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_reverse 0 2938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor2.CNhs11990.11366-117I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11366-117I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_tpm_rev SmcSubclavianArteryD2- bigWig Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_reverse 1 2938 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor2.CNhs11990.11366-117I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor2_CNhs11990_11366-117I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11366-117I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcSubclavianArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor2_CNhs11990_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11366-117I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF893XIF ENCSR400ISH Peak bigBed 5 HG02571 ATAC peak 4 2939 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/1003f828-6359-43b9-858e-3f10927258fc/ENCFF893XIF.bigBed\ color 2,199,185\ longLabel HG02571 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR400ISH Peak\ track wgEncodeReg4Epigenetics_ENCFF893XIF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF539IIQ ENCSR432QMW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF335 ZNF335 peaks 4 2939 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/6b4737b6-79f8-4ec8-b9e4-b2f91a28e624/ENCFF539IIQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF335 ZNF335 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR432QMW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF539IIQ\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_ctss_fwd SmcSubclavianArteryD3+ bigWig Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_forward 0 2939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor3.CNhs12048.11438-118H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11438-118H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_tpm_fwd SmcSubclavianArteryD3+ bigWig Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_forward 1 2939 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor3.CNhs12048.11438-118H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11438-118H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcSubclavianArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF008HZU ENCSR400ISH Signal bigWig HG02571 ATAC signal 2 2940 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/5c0593b6-ea02-4f3a-9b02-a6212a0dbc79/ENCFF008HZU.bigWig\ color 2,199,185\ longLabel HG02571 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR400ISH Signal\ track wgEncodeReg4Epigenetics_ENCFF008HZU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF454HHU ENCSR432QMW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF335 ZNF335 ENCSR432QMW signal 2 2940 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/9de0caf6-f0f3-43e7-8926-f90d37c1e7ac/ENCFF454HHU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF335 ZNF335 ENCSR432QMW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR432QMW Signal\ track wgEncodeReg4TfChip_ENCFF454HHU\ type bigWig\ visibility full\ SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_ctss_rev SmcSubclavianArteryD3- bigWig Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_reverse 0 2940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor3.CNhs12048.11438-118H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11438-118H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcSubclavianArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_tpm_rev SmcSubclavianArteryD3- bigWig Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_reverse 1 2940 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Subclavian%20Artery%2c%20donor3.CNhs12048.11438-118H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Subclavian Artery, donor3_CNhs12048_11438-118H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11438-118H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcSubclavianArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsSubclavianArteryDonor3_CNhs12048_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11438-118H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF889EST ENCSR400MOP Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase peak 4 2941 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/0edc06e8-7776-4592-90f8-3bebdea553c4/ENCFF889EST.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR400MOP Peak\ track wgEncodeReg4Epigenetics_ENCFF889EST\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF857SLT ENCSR434XLP Peak bigBed 5 Tibial nerve tissue male adult (37 years) CTCF peaks 4 2941 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4f5135f2-598b-49bc-86a6-5e546acc5942/ENCFF857SLT.bigBed\ labelFields none\ longLabel Tibial nerve tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR434XLP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF857SLT\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsTrachealDonor1_CNhs11329_ctss_fwd SmcTrachealD1+ bigWig Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward 0 2941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor1.CNhs11329.11513-119H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11513-119H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor1_CNhs11329_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor1_CNhs11329_tpm_fwd SmcTrachealD1+ bigWig Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward 1 2941 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor1.CNhs11329.11513-119H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11513-119H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcTrachealD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor1_CNhs11329_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF873DKH ENCSR400MOP Signal bigWig Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase signal 2 2942 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/c0552724-c0db-41db-b925-f9f146854198/ENCFF873DKH.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR400MOP Signal\ track wgEncodeReg4Epigenetics_ENCFF873DKH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF670BZH ENCSR434XLP Signal bigWig Tibial nerve tissue male adult (37 years) CTCF ENCSR434XLP signal 2 2942 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/0a05395e-a222-433e-8ce1-a4e5289d88e9/ENCFF670BZH.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue male adult (37 years) CTCF ENCSR434XLP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR434XLP Signal\ track wgEncodeReg4TfChip_ENCFF670BZH\ type bigWig\ visibility full\ SmoothMuscleCellsTrachealDonor1_CNhs11329_ctss_rev SmcTrachealD1- bigWig Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_reverse 0 2942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor1.CNhs11329.11513-119H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11513-119H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsTrachealDonor1_CNhs11329_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor1_CNhs11329_tpm_rev SmcTrachealD1- bigWig Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_reverse 1 2942 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor1.CNhs11329.11513-119H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Tracheal, donor1_CNhs11329_11513-119H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11513-119H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcTrachealD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsTrachealDonor1_CNhs11329_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11513-119H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF907YBT ENCSR400YJR Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell DNase peak 4 2943 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/076f68b9-8edf-470e-9b56-96f1cf760af2/ENCFF907YBT.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR400YJR Peak\ track wgEncodeReg4Epigenetics_ENCFF907YBT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF559CYZ ENCSR434ZNS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens WIZ WIZ peaks 4 2943 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/e7032b61-b7ca-4607-88b0-79301ec8dd03/ENCFF559CYZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens WIZ WIZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR434ZNS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF559CYZ\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsTrachealDonor2_CNhs12567_ctss_fwd SmcTrachealD2+ bigWig Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_forward 0 2943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor2.CNhs12567.11593-120G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11593-120G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor2_CNhs12567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor2_CNhs12567_tpm_fwd SmcTrachealD2+ bigWig Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_forward 1 2943 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor2.CNhs12567.11593-120G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11593-120G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcTrachealD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor2_CNhs12567_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF563KPE ENCSR400YJR Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell DNase signal 2 2944 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/5277e6c7-27f0-4e7d-9d63-9d37097d6535/ENCFF563KPE.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR400YJR Signal\ track wgEncodeReg4Epigenetics_ENCFF563KPE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF741KAL ENCSR434ZNS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens WIZ WIZ ENCSR434ZNS signal 2 2944 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/835aeb5d-1b5b-4457-ae74-f63effb406d1/ENCFF741KAL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens WIZ WIZ ENCSR434ZNS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR434ZNS Signal\ track wgEncodeReg4TfChip_ENCFF741KAL\ type bigWig\ visibility full\ SmoothMuscleCellsTrachealDonor2_CNhs12567_ctss_rev SmcTrachealD2- bigWig Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_reverse 0 2944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor2.CNhs12567.11593-120G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11593-120G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsTrachealDonor2_CNhs12567_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor2_CNhs12567_tpm_rev SmcTrachealD2- bigWig Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_reverse 1 2944 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor2.CNhs12567.11593-120G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Tracheal, donor2_CNhs12567_11593-120G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11593-120G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcTrachealD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsTrachealDonor2_CNhs12567_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11593-120G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF695UWH ENCSR401ESD Peak bigBed 5 Tibial nerve tissue female adult 51 years DNase peak 4 2945 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/6a0ca132-ddc6-4167-b296-a7147bb513f4/ENCFF695UWH.bigBed\ color 6,218,147\ labelFields none\ longLabel Tibial nerve tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401ESD Peak\ track wgEncodeReg4Epigenetics_ENCFF695UWH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF570CKY ENCSR435ARI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 peaks 4 2945 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/58b31918-4eac-46c6-a73e-a71fd3b6c3ff/ENCFF570CKY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR435ARI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF570CKY\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsTrachealDonor3_CNhs12894_ctss_fwd SmcTrachealD3+ bigWig Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_forward 0 2945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor3.CNhs12894.11674-122G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11674-122G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor3_CNhs12894_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor3_CNhs12894_tpm_fwd SmcTrachealD3+ bigWig Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_forward 1 2945 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor3.CNhs12894.11674-122G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11674-122G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcTrachealD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsTrachealDonor3_CNhs12894_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF639UGW ENCSR401ESD Signal bigWig Tibial nerve tissue female adult 51 years DNase signal 2 2946 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/6235f370-0274-4daf-9edf-79ade5dccb8a/ENCFF639UGW.bigWig\ color 6,218,147\ longLabel Tibial nerve tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401ESD Signal\ track wgEncodeReg4Epigenetics_ENCFF639UGW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF665DQA ENCSR435ARI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 ENCSR435ARI signal 2 2946 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/deb0be36-6d5b-4f7f-bf44-d736534e6b7a/ENCFF665DQA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 ENCSR435ARI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR435ARI Signal\ track wgEncodeReg4TfChip_ENCFF665DQA\ type bigWig\ visibility full\ SmoothMuscleCellsTrachealDonor3_CNhs12894_ctss_rev SmcTrachealD3- bigWig Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_reverse 0 2946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor3.CNhs12894.11674-122G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11674-122G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcTrachealD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsTrachealDonor3_CNhs12894_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsTrachealDonor3_CNhs12894_tpm_rev SmcTrachealD3- bigWig Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_reverse 1 2946 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Tracheal%2c%20donor3.CNhs12894.11674-122G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Tracheal, donor3_CNhs12894_11674-122G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11674-122G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcTrachealD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsTrachealDonor3_CNhs12894_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11674-122G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF112KGV ENCSR401KZW Peak bigBed 5 Spleen tissue male adult 26 years H3K27ac peak 4 2947 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/8154c336-8b14-45d9-96f5-a78c068381d9/ENCFF112KGV.bigBed\ color 181,145,0\ longLabel Spleen tissue male adult 26 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401KZW Peak\ track wgEncodeReg4Epigenetics_ENCFF112KGV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF009NAJ ENCSR435OQD Peak bigBed 5 MCF-7 ZFX peaks 4 2947 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a4fe3b62-58bf-4a09-96a0-5e2023784da8/ENCFF009NAJ.bigBed\ labelFields none\ longLabel MCF-7 ZFX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR435OQD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF009NAJ\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_ctss_fwd SmcUmbilicalArteryD0+ bigWig Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_forward 0 2947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20artery%2c%20donor0.CNhs10839.11212-116A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11212-116A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_tpm_fwd SmcUmbilicalArteryD0+ bigWig Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_forward 1 2947 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20artery%2c%20donor0.CNhs10839.11212-116A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11212-116A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF709HME ENCSR401KZW Signal bigWig Spleen tissue male adult 26 years H3K27ac signal 2 2948 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/7cdf398a-1732-4bf2-9158-f8eb2edc9ba0/ENCFF709HME.bigWig\ color 181,145,0\ longLabel Spleen tissue male adult 26 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401KZW Signal\ track wgEncodeReg4Epigenetics_ENCFF709HME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF429AXS ENCSR435OQD Signal bigWig MCF-7 ZFX ENCSR435OQD signal 2 2948 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e5eede89-ac9d-49e9-8ede-7b91f38bdcf4/ENCFF429AXS.bigWig\ color 65,171,173\ longLabel MCF-7 ZFX ENCSR435OQD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR435OQD Signal\ track wgEncodeReg4TfChip_ENCFF429AXS\ type bigWig\ visibility full\ SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_ctss_rev SmcUmbilicalArteryD0- bigWig Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_reverse 0 2948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20artery%2c%20donor0.CNhs10839.11212-116A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11212-116A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_tpm_rev SmcUmbilicalArteryD0- bigWig Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_reverse 1 2948 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20artery%2c%20donor0.CNhs10839.11212-116A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical artery, donor0_CNhs10839_11212-116A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11212-116A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor0_CNhs10839_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11212-116A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF893XHV ENCSR401UZL Peak bigBed 5 Middle frontal area 46 tissue male adult 78 years DNase peak 4 2949 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/adbf6b34-c144-47a6-a89d-79cc80280dab/ENCFF893XHV.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401UZL Peak\ track wgEncodeReg4Epigenetics_ENCFF893XHV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF464ZKH ENCSR436PIH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF483 ZNF483 peaks 4 2949 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/492e05c2-c7a8-4cb6-bf34-8a36b45b2c19/ENCFF464ZKH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF483 ZNF483 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR436PIH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF464ZKH\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_ctss_fwd SmcUmbilicalArteryD1+ bigWig Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_forward 0 2949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor1.CNhs11091.11290-117A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11290-117A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_tpm_fwd SmcUmbilicalArteryD1+ bigWig Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_forward 1 2949 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor1.CNhs11091.11290-117A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11290-117A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF284PMB ENCSR401UZL Signal bigWig Middle frontal area 46 tissue male adult 78 years DNase signal 2 2950 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9505c6d4-a6dc-40bb-b54a-5f5994e6a07f/ENCFF284PMB.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue male adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401UZL Signal\ track wgEncodeReg4Epigenetics_ENCFF284PMB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF077WIM ENCSR436PIH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF483 ZNF483 ENCSR436PIH signal 2 2950 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/281ed2be-bf5b-49ce-96e5-927405da61cf/ENCFF077WIM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF483 ZNF483 ENCSR436PIH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR436PIH Signal\ track wgEncodeReg4TfChip_ENCFF077WIM\ type bigWig\ visibility full\ SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_ctss_rev SmcUmbilicalArteryD1- bigWig Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_reverse 0 2950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor1.CNhs11091.11290-117A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11290-117A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_tpm_rev SmcUmbilicalArteryD1- bigWig Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_reverse 1 2950 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor1.CNhs11091.11290-117A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Artery, donor1_CNhs11091_11290-117A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11290-117A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor1_CNhs11091_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11290-117A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF506EFM ENCSR401VZL Peak bigBed 5 Middle frontal area 46 tissue male adult 81 years H3K4me3 peak 4 2951 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/66eb3f26-6648-41e6-864b-7eb145fa71b1/ENCFF506EFM.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 81 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401VZL Peak\ track wgEncodeReg4Epigenetics_ENCFF506EFM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF340KVJ ENCSR437GBJ Peak bigBed 5 GM12878 NFATC3 peaks 4 2951 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/683b48f7-da9c-4243-b8ca-4d928f21b902/ENCFF340KVJ.bigBed\ labelFields none\ longLabel GM12878 NFATC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR437GBJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF340KVJ\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_ctss_fwd SmcUmbilicalArteryD2+ bigWig Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_forward 0 2951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor2.CNhs11991.11367-117I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11367-117I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_tpm_fwd SmcUmbilicalArteryD2+ bigWig Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_forward 1 2951 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor2.CNhs11991.11367-117I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11367-117I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF084JUK ENCSR401VZL Signal bigWig Middle frontal area 46 tissue male adult 81 years H3K4me3 signal 2 2952 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/53ec1dba-e83e-4363-8eec-0b5a72573071/ENCFF084JUK.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR401VZL Signal\ track wgEncodeReg4Epigenetics_ENCFF084JUK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF309YZY ENCSR437GBJ Signal bigWig GM12878 NFATC3 ENCSR437GBJ signal 2 2952 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/5d555d47-dad5-46a5-9756-51c907f0cbfa/ENCFF309YZY.bigWig\ color 254,75,173\ longLabel GM12878 NFATC3 ENCSR437GBJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR437GBJ Signal\ track wgEncodeReg4TfChip_ENCFF309YZY\ type bigWig\ visibility full\ SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_ctss_rev SmcUmbilicalArteryD2- bigWig Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_reverse 0 2952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor2.CNhs11991.11367-117I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11367-117I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_tpm_rev SmcUmbilicalArteryD2- bigWig Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_reverse 1 2952 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor2.CNhs11991.11367-117I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Artery, donor2_CNhs11991_11367-117I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11367-117I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor2_CNhs11991_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11367-117I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF092QWV ENCSR402HFW Peak bigBed 5 Pancreas tissue female adult 30 years H3K27ac peak 4 2953 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/3ae9bd15-cc59-4802-ac8b-7a1144abd826/ENCFF092QWV.bigBed\ color 181,145,0\ longLabel Pancreas tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR402HFW Peak\ track wgEncodeReg4Epigenetics_ENCFF092QWV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF490XGT ENCSR438RRM Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 peaks 4 2953 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/cdc79941-8200-4da6-9856-68d846bcbf23/ENCFF490XGT.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR438RRM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF490XGT\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_ctss_fwd SmcUmbilicalArteryD3+ bigWig Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_forward 0 2953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor3.CNhs12049.11439-118H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11439-118H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_tpm_fwd SmcUmbilicalArteryD3+ bigWig Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_forward 1 2953 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor3.CNhs12049.11439-118H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11439-118H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF907EJV ENCSR402HFW Signal bigWig Pancreas tissue female adult 30 years H3K27ac signal 2 2954 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/cb4bfd6b-99ca-487c-9880-529e7f685f7a/ENCFF907EJV.bigWig\ color 181,145,0\ longLabel Pancreas tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR402HFW Signal\ track wgEncodeReg4Epigenetics_ENCFF907EJV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF272TVG ENCSR438RRM Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 ENCSR438RRM signal 2 2954 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/bd2b0ae3-7328-4ac5-b779-76f12c95242c/ENCFF272TVG.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXM1 FOXM1 ENCSR438RRM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR438RRM Signal\ track wgEncodeReg4TfChip_ENCFF272TVG\ type bigWig\ visibility full\ SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_ctss_rev SmcUmbilicalArteryD3- bigWig Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_reverse 0 2954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor3.CNhs12049.11439-118H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11439-118H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_tpm_rev SmcUmbilicalArteryD3- bigWig Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_reverse 1 2954 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Artery%2c%20donor3.CNhs12049.11439-118H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Artery, donor3_CNhs12049_11439-118H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11439-118H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalArteryD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalArteryDonor3_CNhs12049_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11439-118H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF869JMQ ENCSR402IDP Peak bigBed 5 MM.1S CTCF peak 4 2955 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/28166395-b523-42ae-9642-2c398cc25ce8/ENCFF869JMQ.bigBed\ color 0,176,240\ labelFields none\ longLabel MM.1S CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR402IDP Peak\ track wgEncodeReg4Epigenetics_ENCFF869JMQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF893ASX ENCSR439OCL Peak bigBed 5 K562 ZNF407 peaks 4 2955 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9f80a5b4-4a11-4568-9c86-ed8b9fde0833/ENCFF893ASX.bigBed\ labelFields none\ longLabel K562 ZNF407 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR439OCL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF893ASX\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_ctss_fwd SmcUmbilicalVeinD1+ bigWig Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_forward 0 2955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor1.CNhs12597.11541-120B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11541-120B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_tpm_fwd SmcUmbilicalVeinD1+ bigWig Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_forward 1 2955 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor1.CNhs12597.11541-120B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11541-120B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalVeinD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF838OJW ENCSR402IDP Signal bigWig MM.1S CTCF signal 2 2956 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8eb45816-0445-4512-b14d-8b655994d2c6/ENCFF838OJW.bigWig\ color 0,176,240\ longLabel MM.1S CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR402IDP Signal\ track wgEncodeReg4Epigenetics_ENCFF838OJW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF291YGU ENCSR439OCL Signal bigWig K562 ZNF407 ENCSR439OCL signal 2 2956 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/7f97538c-63c0-4331-9ae8-3bb4eb44f885/ENCFF291YGU.bigWig\ color 254,75,173\ longLabel K562 ZNF407 ENCSR439OCL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR439OCL Signal\ track wgEncodeReg4TfChip_ENCFF291YGU\ type bigWig\ visibility full\ SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_ctss_rev SmcUmbilicalVeinD1- bigWig Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_reverse 0 2956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor1.CNhs12597.11541-120B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11541-120B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalVeinD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_tpm_rev SmcUmbilicalVeinD1- bigWig Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_reverse 1 2956 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor1.CNhs12597.11541-120B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Vein, donor1_CNhs12597_11541-120B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11541-120B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalVeinD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalVeinDonor1_CNhs12597_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11541-120B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF487WWX ENCSR402JWL Peak bigBed 5 Heart left ventricle tissue male adult 73 years H3K27ac peak 4 2957 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/158e8e74-2d56-46f8-a6b1-f75d08284490/ENCFF487WWX.bigBed\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 73 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR402JWL Peak\ track wgEncodeReg4Epigenetics_ENCFF487WWX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF007QKJ ENCSR439WAF Peak bigBed 5 GM12878 E4F1 peaks 4 2957 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/6d8c87fc-92ea-4c2a-b656-14bc194fa09d/ENCFF007QKJ.bigBed\ labelFields none\ longLabel GM12878 E4F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR439WAF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF007QKJ\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_ctss_fwd SmcUmbilicalVeinD2+ bigWig Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_forward 0 2957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor2.CNhs12569.11621-122B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11621-122B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_tpm_fwd SmcUmbilicalVeinD2+ bigWig Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_forward 1 2957 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor2.CNhs12569.11621-122B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11621-122B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalVeinD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF593RGX ENCSR402JWL Signal bigWig Heart left ventricle tissue male adult 73 years H3K27ac signal 2 2958 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/e19faadd-e8a1-4a65-8e8b-f9e4159c1330/ENCFF593RGX.bigWig\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 73 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR402JWL Signal\ track wgEncodeReg4Epigenetics_ENCFF593RGX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF188UFJ ENCSR439WAF Signal bigWig GM12878 E4F1 ENCSR439WAF signal 2 2958 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/16853625-03cd-48c8-8634-6b208f09a738/ENCFF188UFJ.bigWig\ color 254,75,173\ longLabel GM12878 E4F1 ENCSR439WAF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR439WAF Signal\ track wgEncodeReg4TfChip_ENCFF188UFJ\ type bigWig\ visibility full\ SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_ctss_rev SmcUmbilicalVeinD2- bigWig Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_reverse 0 2958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor2.CNhs12569.11621-122B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11621-122B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_tpm_rev SmcUmbilicalVeinD2- bigWig Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_reverse 1 2958 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor2.CNhs12569.11621-122B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Vein, donor2_CNhs12569_11621-122B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11621-122B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalVeinD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalVeinDonor2_CNhs12569_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11621-122B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF735HKP ENCSR403KAA Peak bigBed 5 Fibroblast of breast female adult 17 years H3K4me3 peak 4 2959 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/97708b38-e66d-4da4-a2aa-47c8f0cca2f3/ENCFF735HKP.bigBed\ color 255,0,0\ longLabel Fibroblast of breast female adult 17 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR403KAA Peak\ track wgEncodeReg4Epigenetics_ENCFF735HKP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF850XGU ENCSR440COG Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF239 ZNF239 peaks 4 2959 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/7085e5ff-72bc-4b19-9638-715d2be35487/ENCFF850XGU.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF239 ZNF239 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR440COG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF850XGU\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_ctss_fwd SmcUmbilicalVeinD3+ bigWig Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_forward 0 2959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor3.CNhs13076.11702-123B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11702-123B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_tpm_fwd SmcUmbilicalVeinD3+ bigWig Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_forward 1 2959 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor3.CNhs13076.11702-123B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11702-123B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalVeinD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF244FXK ENCSR403KAA Signal bigWig Fibroblast of breast female adult 17 years H3K4me3 signal 2 2960 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/aa1661b5-dbfd-476b-8464-2df69d8ffaaf/ENCFF244FXK.bigWig\ color 255,0,0\ longLabel Fibroblast of breast female adult 17 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR403KAA Signal\ track wgEncodeReg4Epigenetics_ENCFF244FXK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF062SJC ENCSR440COG Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF239 ZNF239 ENCSR440COG signal 2 2960 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/58fd89a1-3a6d-4d6b-ae4c-afa22859cc20/ENCFF062SJC.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF239 ZNF239 ENCSR440COG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR440COG Signal\ track wgEncodeReg4TfChip_ENCFF062SJC\ type bigWig\ visibility full\ SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_ctss_rev SmcUmbilicalVeinD3- bigWig Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_reverse 0 2960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor3.CNhs13076.11702-123B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11702-123B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUmbilicalVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_tpm_rev SmcUmbilicalVeinD3- bigWig Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_reverse 1 2960 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Umbilical%20Vein%2c%20donor3.CNhs13076.11702-123B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Umbilical Vein, donor3_CNhs13076_11702-123B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11702-123B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUmbilicalVeinD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUmbilicalVeinDonor3_CNhs13076_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11702-123B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF108JBO ENCSR403PEI Peak bigBed 5 Esophagus muscularis mucosa tissue female adult 51 years H3K4me3 peak 4 2961 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/fa0ce3f8-fcf5-4297-9fb5-00b33b8b42cd/ENCFF108JBO.bigBed\ color 255,0,0\ longLabel Esophagus muscularis mucosa tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR403PEI Peak\ track wgEncodeReg4Epigenetics_ENCFF108JBO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF692RZJ ENCSR440UPD Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EMX1 EMX1 peaks 4 2961 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/20022f18-949e-4667-b5c1-f5d2f0bfa98a/ENCFF692RZJ.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EMX1 EMX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR440UPD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF692RZJ\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUterineDonor1_CNhs11921_ctss_fwd SmcUterineD1+ bigWig Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_forward 0 2961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor1.CNhs11921.11258-116F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11258-116F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUterineD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUterineDonor1_CNhs11921_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor1_CNhs11921_tpm_fwd SmcUterineD1+ bigWig Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_forward 1 2961 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor1.CNhs11921.11258-116F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11258-116F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUterineD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUterineDonor1_CNhs11921_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF061HFF ENCSR403PEI Signal bigWig Esophagus muscularis mucosa tissue female adult 51 years H3K4me3 signal 2 2962 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/1743e070-b84e-47fa-b809-3710c8ec2fce/ENCFF061HFF.bigWig\ color 255,0,0\ longLabel Esophagus muscularis mucosa tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR403PEI Signal\ track wgEncodeReg4Epigenetics_ENCFF061HFF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070ATS ENCSR440UPD Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EMX1 EMX1 ENCSR440UPD signal 2 2962 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/6281cbe7-09f5-4317-bcc2-7bef02aad822/ENCFF070ATS.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens EMX1 EMX1 ENCSR440UPD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR440UPD Signal\ track wgEncodeReg4TfChip_ENCFF070ATS\ type bigWig\ visibility full\ SmoothMuscleCellsUterineDonor1_CNhs11921_ctss_rev SmcUterineD1- bigWig Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_reverse 0 2962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor1.CNhs11921.11258-116F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11258-116F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUterineD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUterineDonor1_CNhs11921_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor1_CNhs11921_tpm_rev SmcUterineD1- bigWig Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_reverse 1 2962 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor1.CNhs11921.11258-116F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Uterine, donor1_CNhs11921_11258-116F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11258-116F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUterineD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUterineDonor1_CNhs11921_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11258-116F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF726VPF ENCSR403PHS Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K4me3 peak 4 2963 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/5bc9ae4d-7bd1-4d32-84a3-51311a45da17/ENCFF726VPF.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR403PHS Peak\ track wgEncodeReg4Epigenetics_ENCFF726VPF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF492SKF ENCSR440VKE Peak bigBed 5 K562 stably expressing ADNP ADNP peaks 4 2963 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ddd64b54-7aad-4a2d-9270-ce677581b64b/ENCFF492SKF.bigBed\ labelFields none\ longLabel K562 stably expressing ADNP ADNP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR440VKE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF492SKF\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleCellsUterineDonor3_CNhs11927_ctss_fwd SmcUterineD3+ bigWig Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_forward 0 2963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor3.CNhs11927.11466-119B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11466-119B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUterineD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUterineDonor3_CNhs11927_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor3_CNhs11927_tpm_fwd SmcUterineD3+ bigWig Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_forward 1 2963 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor3.CNhs11927.11466-119B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11466-119B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUterineD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SmoothMuscleCellsUterineDonor3_CNhs11927_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF666VNK ENCSR403PHS Signal bigWig Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K4me3 signal 2 2964 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/9ab7114b-0959-43df-8de3-faff25ec1577/ENCFF666VNK.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR403PHS Signal\ track wgEncodeReg4Epigenetics_ENCFF666VNK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF852FRV ENCSR440VKE Signal bigWig K562 stably expressing ADNP ADNP ENCSR440VKE signal 2 2964 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/7a861d77-d1b2-4b4d-97f8-dd35f2385db4/ENCFF852FRV.bigWig\ color 254,75,173\ longLabel K562 stably expressing ADNP ADNP ENCSR440VKE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR440VKE Signal\ track wgEncodeReg4TfChip_ENCFF852FRV\ type bigWig\ visibility full\ SmoothMuscleCellsUterineDonor3_CNhs11927_ctss_rev SmcUterineD3- bigWig Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse 0 2964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor3.CNhs11927.11466-119B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11466-119B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmcUterineD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUterineDonor3_CNhs11927_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8\ urlLabel FANTOM5 Details:\ SmoothMuscleCellsUterineDonor3_CNhs11927_tpm_rev SmcUterineD3- bigWig Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse 1 2964 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Smooth%20Muscle%20Cells%20-%20Uterine%2c%20donor3.CNhs11927.11466-119B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Smooth Muscle Cells - Uterine, donor3_CNhs11927_11466-119B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11466-119B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmcUterineD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SmoothMuscleCellsUterineDonor3_CNhs11927_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11466-119B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF196BRS ENCSR404LLJ Peak bigBed 5 Transverse colon tissue female adult 53 years ATAC peak 4 2965 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/535b5bb5-449a-424a-9268-07fbcf2c9825/ENCFF196BRS.bigBed\ color 2,199,185\ longLabel Transverse colon tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR404LLJ Peak\ track wgEncodeReg4Epigenetics_ENCFF196BRS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF308ELA ENCSR441KFW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD4 MXD4 peaks 4 2965 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/9e7c1786-dcce-4666-91ba-243f9b637688/ENCFF308ELA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD4 MXD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR441KFW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF308ELA\ type bigBed 5\ useScore 1\ visibility squish\ SynoviocyteDonor1_CNhs11068_ctss_fwd SynoviocyteD1+ bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_forward 0 2965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor1_CNhs11068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ SynoviocyteDonor1_CNhs11068_tpm_fwd SynoviocyteD1+ bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_forward 1 2965 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor1_CNhs11068_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF033RPN ENCSR404LLJ Signal bigWig Transverse colon tissue female adult 53 years ATAC signal 2 2966 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/c35de220-6126-460c-9e47-366a9b0c7a30/ENCFF033RPN.bigWig\ color 2,199,185\ longLabel Transverse colon tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR404LLJ Signal\ track wgEncodeReg4Epigenetics_ENCFF033RPN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF599CGU ENCSR441KFW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD4 MXD4 ENCSR441KFW signal 2 2966 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d69a704f-d4ad-4db2-8167-66cd91ec2df7/ENCFF599CGU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD4 MXD4 ENCSR441KFW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR441KFW Signal\ track wgEncodeReg4TfChip_ENCFF599CGU\ type bigWig\ visibility full\ SynoviocyteDonor1_CNhs11068_ctss_rev SynoviocyteD1- bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_reverse 0 2966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor1_CNhs11068_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ SynoviocyteDonor1_CNhs11068_tpm_rev SynoviocyteD1- bigWig Synoviocyte, donor1_CNhs11068_11291-117A4_reverse 1 2966 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor1.CNhs11068.11291-117A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor1_CNhs11068_11291-117A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11291-117A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor1_CNhs11068_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11291-117A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF838TQA ENCSR404OEO Peak bigBed 5 HG02763 ATAC peak 4 2967 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/0f19789a-5a0f-4194-83ab-d1752cbd1b4f/ENCFF838TQA.bigBed\ color 2,199,185\ longLabel HG02763 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR404OEO Peak\ track wgEncodeReg4Epigenetics_ENCFF838TQA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF824TGK ENCSR441VHN Peak bigBed 5 GM12878 IKZF1 peaks 4 2967 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ba57becf-1d3e-4f64-afb2-aeb6f2fa8940/ENCFF824TGK.bigBed\ labelFields none\ longLabel GM12878 IKZF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR441VHN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF824TGK\ type bigBed 5\ useScore 1\ visibility squish\ SynoviocyteDonor2_CNhs11992_ctss_fwd SynoviocyteD2+ bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_forward 0 2967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor2_CNhs11992_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_tpm_fwd SynoviocyteD2+ bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_forward 1 2967 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor2_CNhs11992_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF997MUT ENCSR404OEO Signal bigWig HG02763 ATAC signal 2 2968 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/dddcdd5f-987a-405f-888a-676df2ac2811/ENCFF997MUT.bigWig\ color 2,199,185\ longLabel HG02763 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR404OEO Signal\ track wgEncodeReg4Epigenetics_ENCFF997MUT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF096PPW ENCSR441VHN Signal bigWig GM12878 IKZF1 ENCSR441VHN signal 2 2968 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/facb62ce-127f-4d3c-8b19-4b4f6884503e/ENCFF096PPW.bigWig\ color 254,75,173\ longLabel GM12878 IKZF1 ENCSR441VHN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR441VHN Signal\ track wgEncodeReg4TfChip_ENCFF096PPW\ type bigWig\ visibility full\ SynoviocyteDonor2_CNhs11992_ctss_rev SynoviocyteD2- bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_reverse 0 2968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor2_CNhs11992_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor2_CNhs11992_tpm_rev SynoviocyteD2- bigWig Synoviocyte, donor2_CNhs11992_11368-117I9_reverse 1 2968 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor2.CNhs11992.11368-117I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor2_CNhs11992_11368-117I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11368-117I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor2_CNhs11992_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11368-117I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF590QBX ENCSR404TSP Peak bigBed 5 Mucosa of descending colon tissue female adult 61 years DNase peak 4 2969 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/284622fe-86f1-4744-af56-ab6c66a817a9/ENCFF590QBX.bigBed\ color 6,218,147\ labelFields none\ longLabel Mucosa of descending colon tissue female adult 61 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR404TSP Peak\ track wgEncodeReg4Epigenetics_ENCFF590QBX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF545MVF ENCSR442CIF Peak bigBed 5 Prostate gland tissue male adult (54 years) POLR2AphosphoS5 peaks 4 2969 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/24/3bc0e0a0-dc94-4706-ad3f-e152b28ce998/ENCFF545MVF.bigBed\ labelFields none\ longLabel Prostate gland tissue male adult (54 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR442CIF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF545MVF\ type bigBed 5\ useScore 1\ visibility squish\ SynoviocyteDonor3_CNhs12050_ctss_fwd SynoviocyteD3+ bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_forward 0 2969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor3_CNhs12050_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_tpm_fwd SynoviocyteD3+ bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_forward 1 2969 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track SynoviocyteDonor3_CNhs12050_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF755FPE ENCSR404TSP Signal bigWig Mucosa of descending colon tissue female adult 61 years DNase signal 2 2970 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/4b6d867d-abcd-4b7d-b3c9-e5759defad57/ENCFF755FPE.bigWig\ color 6,218,147\ longLabel Mucosa of descending colon tissue female adult 61 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR404TSP Signal\ track wgEncodeReg4Epigenetics_ENCFF755FPE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF338DNJ ENCSR442CIF Signal bigWig Prostate gland tissue male adult (54 years) POLR2AphosphoS5 ENCSR442CIF signal 2 2970 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/24/748d3cbd-0d7b-4855-8291-a7500a468eaa/ENCFF338DNJ.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (54 years) POLR2AphosphoS5 ENCSR442CIF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR442CIF Signal\ track wgEncodeReg4TfChip_ENCFF338DNJ\ type bigWig\ visibility full\ SynoviocyteDonor3_CNhs12050_ctss_rev SynoviocyteD3- bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_reverse 0 2970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SynoviocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor3_CNhs12050_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ SynoviocyteDonor3_CNhs12050_tpm_rev SynoviocyteD3- bigWig Synoviocyte, donor3_CNhs12050_11440-118H9_reverse 1 2970 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Synoviocyte%2c%20donor3.CNhs12050.11440-118H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Synoviocyte, donor3_CNhs12050_11440-118H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11440-118H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SynoviocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track SynoviocyteDonor3_CNhs12050_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11440-118H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF545VRH ENCSR405ESP Peak bigBed 5 Adrenal gland tissue male adult 34 years H3K27ac peak 4 2971 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f1d64417-9ea4-492f-9ecc-57d40f9f177e/ENCFF545VRH.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR405ESP Peak\ track wgEncodeReg4Epigenetics_ENCFF545VRH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF128SEB ENCSR442VBJ Peak bigBed 5 MCF-7 RAD51 peaks 4 2971 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/6b27090f-a4f5-45d6-92ff-46f47fcdf63d/ENCFF128SEB.bigBed\ labelFields none\ longLabel MCF-7 RAD51 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR442VBJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF128SEB\ type bigBed 5\ useScore 1\ visibility squish\ TenocyteDonor1_CNhs12639_ctss_fwd TenocyteD1+ bigWig tenocyte, donor1_CNhs12639_11763-123H8_forward 0 2971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor1_CNhs12639_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_tpm_fwd TenocyteD1+ bigWig tenocyte, donor1_CNhs12639_11763-123H8_forward 1 2971 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor1_CNhs12639_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF659XPV ENCSR405ESP Signal bigWig Adrenal gland tissue male adult 34 years H3K27ac signal 2 2972 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/6412acd4-8d3d-45c6-9dc9-2695e6058e31/ENCFF659XPV.bigWig\ color 181,145,0\ longLabel Adrenal gland tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR405ESP Signal\ track wgEncodeReg4Epigenetics_ENCFF659XPV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF491ULK ENCSR442VBJ Signal bigWig MCF-7 RAD51 ENCSR442VBJ signal 2 2972 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/adb59b17-ef9c-44d7-b543-ec912e1bd9eb/ENCFF491ULK.bigWig\ color 65,171,173\ longLabel MCF-7 RAD51 ENCSR442VBJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR442VBJ Signal\ track wgEncodeReg4TfChip_ENCFF491ULK\ type bigWig\ visibility full\ TenocyteDonor1_CNhs12639_ctss_rev TenocyteD1- bigWig tenocyte, donor1_CNhs12639_11763-123H8_reverse 0 2972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor1_CNhs12639_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ TenocyteDonor1_CNhs12639_tpm_rev TenocyteD1- bigWig tenocyte, donor1_CNhs12639_11763-123H8_reverse 1 2972 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor1.CNhs12639.11763-123H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor1_CNhs12639_11763-123H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11763-123H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor1_CNhs12639_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11763-123H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF300XQV ENCSR405FZE Signal bigWig Duodenal mucosa tissue male adult 59 years H3K27ac signal 2 2973 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/81b84333-faa7-4c8c-bcce-e380f750716a/ENCFF300XQV.bigWig\ color 181,145,0\ longLabel Duodenal mucosa tissue male adult 59 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR405FZE Signal\ track wgEncodeReg4Epigenetics_ENCFF300XQV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF759BBR ENCSR442ZTI Peak bigBed 5 Esophagus muscularis mucosa tissue female adult (51 years) POLR2AphosphoS5 peaks 4 2973 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/dacd67c4-5381-4d3c-83f2-d5e966b3543a/ENCFF759BBR.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR442ZTI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF759BBR\ type bigBed 5\ useScore 1\ visibility squish\ TenocyteDonor2_CNhs12640_ctss_fwd TenocyteD2+ bigWig tenocyte, donor2_CNhs12640_11765-123I1_forward 0 2973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor2_CNhs12640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_tpm_fwd TenocyteD2+ bigWig tenocyte, donor2_CNhs12640_11765-123I1_forward 1 2973 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor2_CNhs12640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF925MHH ENCSR405TXU Peak bigBed 5 Adipocyte DNase peak 4 2974 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b2f98497-4e21-4743-9d47-ae1dc5905648/ENCFF925MHH.bigBed\ color 6,218,147\ labelFields none\ longLabel Adipocyte DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR405TXU Peak\ track wgEncodeReg4Epigenetics_ENCFF925MHH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF976HHF ENCSR442ZTI Signal bigWig Esophagus muscularis mucosa tissue female adult (51 years) POLR2AphosphoS5 ENCSR442ZTI signal 2 2974 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/200d9f86-900d-4385-b85f-133327a07f58/ENCFF976HHF.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) POLR2AphosphoS5 ENCSR442ZTI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR442ZTI Signal\ track wgEncodeReg4TfChip_ENCFF976HHF\ type bigWig\ visibility full\ TenocyteDonor2_CNhs12640_ctss_rev TenocyteD2- bigWig tenocyte, donor2_CNhs12640_11765-123I1_reverse 0 2974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor2_CNhs12640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ TenocyteDonor2_CNhs12640_tpm_rev TenocyteD2- bigWig tenocyte, donor2_CNhs12640_11765-123I1_reverse 1 2974 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor2.CNhs12640.11765-123I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor2_CNhs12640_11765-123I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11765-123I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor2_CNhs12640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11765-123I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF776FME ENCSR405TXU Signal bigWig Adipocyte DNase signal 2 2975 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/83dd9ec9-b725-472b-b4f2-9d468e5b5c02/ENCFF776FME.bigWig\ color 6,218,147\ longLabel Adipocyte DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR405TXU Signal\ track wgEncodeReg4Epigenetics_ENCFF776FME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF069PHD ENCSR443MVV Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM4 PRDM4 peaks 4 2975 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/a3e9316e-d780-417a-820a-31a15e805195/ENCFF069PHD.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM4 PRDM4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR443MVV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF069PHD\ type bigBed 5\ useScore 1\ visibility squish\ TenocyteDonor3_CNhs12641_ctss_fwd TenocyteD3+ bigWig tenocyte, donor3_CNhs12641_11768-123I4_forward 0 2975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor3_CNhs12641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_tpm_fwd TenocyteD3+ bigWig tenocyte, donor3_CNhs12641_11768-123I4_forward 1 2975 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TenocyteDonor3_CNhs12641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF261FVF ENCSR405YLV Peak bigBed 5 Body of pancreas tissue female adult 51 years DNase peak 4 2976 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/74e188f5-0ec8-44fe-9091-6a53232e3a79/ENCFF261FVF.bigBed\ color 6,218,147\ labelFields none\ longLabel Body of pancreas tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR405YLV Peak\ track wgEncodeReg4Epigenetics_ENCFF261FVF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF234PYO ENCSR443MVV Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM4 PRDM4 ENCSR443MVV signal 2 2976 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/a2d7b047-25ca-4bdd-9208-fae1310dc014/ENCFF234PYO.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM4 PRDM4 ENCSR443MVV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR443MVV Signal\ track wgEncodeReg4TfChip_ENCFF234PYO\ type bigWig\ visibility full\ TenocyteDonor3_CNhs12641_ctss_rev TenocyteD3- bigWig tenocyte, donor3_CNhs12641_11768-123I4_reverse 0 2976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TenocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor3_CNhs12641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ TenocyteDonor3_CNhs12641_tpm_rev TenocyteD3- bigWig tenocyte, donor3_CNhs12641_11768-123I4_reverse 1 2976 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tenocyte%2c%20donor3.CNhs12641.11768-123I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tenocyte, donor3_CNhs12641_11768-123I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11768-123I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TenocyteD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TenocyteDonor3_CNhs12641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11768-123I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF225DKL ENCSR405YLV Signal bigWig Body of pancreas tissue female adult 51 years DNase signal 2 2977 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/1ed9f0d1-3f2b-4268-8b18-1a3bfb04ce76/ENCFF225DKL.bigWig\ color 6,218,147\ longLabel Body of pancreas tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR405YLV Signal\ track wgEncodeReg4Epigenetics_ENCFF225DKL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF277CZQ ENCSR443NWG Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 2977 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/96a121d8-0cc1-47d4-9c51-ea984bc11ef6/ENCFF277CZQ.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR443NWG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF277CZQ\ type bigBed 5\ useScore 1\ visibility squish\ TrabecularMeshworkCellsDonor1_CNhs11340_ctss_fwd TrabecularMeshworkCellsD1+ bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward 0 2977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor1_CNhs11340_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_tpm_fwd TrabecularMeshworkCellsD1+ bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward 1 2977 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor1_CNhs11340_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF658FMU ENCSR406AJH Peak bigBed 5 Middle frontal area 46 tissue female adult 82 years H3K4me3 peak 4 2978 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/10ab284e-9ae4-464c-8220-0ce10a372657/ENCFF658FMU.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 82 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR406AJH Peak\ track wgEncodeReg4Epigenetics_ENCFF658FMU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF548SBE ENCSR443NWG Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR443NWG signal 2 2978 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/5f1f40ef-f291-473d-b7b2-ae3422a77b11/ENCFF548SBE.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR443NWG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR443NWG Signal\ track wgEncodeReg4TfChip_ENCFF548SBE\ type bigWig\ visibility full\ TrabecularMeshworkCellsDonor1_CNhs11340_ctss_rev TrabecularMeshworkCellsD1- bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse 0 2978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor1_CNhs11340_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor1_CNhs11340_tpm_rev TrabecularMeshworkCellsD1- bigWig Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse 1 2978 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor1.CNhs11340.11532-120A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor1_CNhs11340_11532-120A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11532-120A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor1_CNhs11340_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11532-120A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF616FVZ ENCSR406AJH Signal bigWig Middle frontal area 46 tissue female adult 82 years H3K4me3 signal 2 2979 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/2ddd410e-c173-4270-9754-ad0bd2b925ff/ENCFF616FVZ.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 82 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR406AJH Signal\ track wgEncodeReg4Epigenetics_ENCFF616FVZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF045JBW ENCSR443WKD Peak bigBed 5 Esophagus muscularis mucosa tissue female adult (51 years) CTCF peaks 4 2979 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/6940acf4-ab0e-4bcc-bd1e-5b7486ae92df/ENCFF045JBW.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR443WKD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF045JBW\ type bigBed 5\ useScore 1\ visibility squish\ TrabecularMeshworkCellsDonor2_CNhs12097_ctss_fwd TrabecularMeshworkCellsD2+ bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward 0 2979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor2_CNhs12097_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_tpm_fwd TrabecularMeshworkCellsD2+ bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward 1 2979 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor2_CNhs12097_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF040HXB ENCSR406DUQ Peak bigBed 5 CD14-positive monocyte male adult 51 years H3K4me3 peak 4 2980 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/d5c06e87-6d15-4342-9275-aa4f3e98fa99/ENCFF040HXB.bigBed\ color 255,0,0\ longLabel CD14-positive monocyte male adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR406DUQ Peak\ track wgEncodeReg4Epigenetics_ENCFF040HXB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF385AXR ENCSR443WKD Signal bigWig Esophagus muscularis mucosa tissue female adult (51 years) CTCF ENCSR443WKD signal 2 2980 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/0ff9cb90-6d13-4e9c-a0c5-0814f56b1bac/ENCFF385AXR.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (51 years) CTCF ENCSR443WKD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR443WKD Signal\ track wgEncodeReg4TfChip_ENCFF385AXR\ type bigWig\ visibility full\ TrabecularMeshworkCellsDonor2_CNhs12097_ctss_rev TrabecularMeshworkCellsD2- bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse 0 2980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor2_CNhs12097_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor2_CNhs12097_tpm_rev TrabecularMeshworkCellsD2- bigWig Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse 1 2980 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor2.CNhs12097.11612-122A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor2_CNhs12097_11612-122A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11612-122A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor2_CNhs12097_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11612-122A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF412XPV ENCSR406DUQ Signal bigWig CD14-positive monocyte male adult 51 years H3K4me3 signal 2 2981 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/7980169b-464b-44e5-ae77-dda8c28958c1/ENCFF412XPV.bigWig\ color 255,0,0\ longLabel CD14-positive monocyte male adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR406DUQ Signal\ track wgEncodeReg4Epigenetics_ENCFF412XPV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF373VBX ENCSR444BFV Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532 ZNF532 peaks 4 2981 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/27/03e59633-5c69-4320-9f3b-5b88d5f26251/ENCFF373VBX.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532 ZNF532 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR444BFV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF373VBX\ type bigBed 5\ useScore 1\ visibility squish\ TrabecularMeshworkCellsDonor3_CNhs12124_ctss_fwd TrabecularMeshworkCellsD3+ bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward 0 2981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor3_CNhs12124_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_tpm_fwd TrabecularMeshworkCellsD3+ bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward 1 2981 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrabecularMeshworkCellsDonor3_CNhs12124_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF984OPI ENCSR406RTH Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak 4 2982 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/e036c208-9567-4089-9ff9-4136963d3d0a/ENCFF984OPI.bigBed\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR406RTH Peak\ track wgEncodeReg4Epigenetics_ENCFF984OPI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF204REI ENCSR444BFV Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532 ZNF532 ENCSR444BFV signal 2 2982 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/27/92a37ee4-aef2-4831-9231-08ec7724cd1b/ENCFF204REI.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF532 ZNF532 ENCSR444BFV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR444BFV Signal\ track wgEncodeReg4TfChip_ENCFF204REI\ type bigWig\ visibility full\ TrabecularMeshworkCellsDonor3_CNhs12124_ctss_rev TrabecularMeshworkCellsD3- bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse 0 2982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrabecularMeshworkCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor3_CNhs12124_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ TrabecularMeshworkCellsDonor3_CNhs12124_tpm_rev TrabecularMeshworkCellsD3- bigWig Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse 1 2982 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Trabecular%20Meshwork%20Cells%2c%20donor3.CNhs12124.11693-123A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Trabecular Meshwork Cells, donor3_CNhs12124_11693-123A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11693-123A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrabecularMeshworkCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrabecularMeshworkCellsDonor3_CNhs12124_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11693-123A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF999RBA ENCSR406RTH Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal 2 2983 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3a039a6d-71af-4a04-ac2b-6576d1b181b2/ENCFF999RBA.bigWig\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR406RTH Signal\ track wgEncodeReg4Epigenetics_ENCFF999RBA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF628OFQ ENCSR444LIN Peak bigBed 5 HepG2 TCF7 peaks 4 2983 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8b7c9e3b-02c7-4bc5-a93d-38b108cc40ae/ENCFF628OFQ.bigBed\ labelFields none\ longLabel HepG2 TCF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR444LIN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF628OFQ\ type bigBed 5\ useScore 1\ visibility squish\ TrachealEpithelialCellsDonor1_CNhs11092_ctss_fwd TrachealEpithelialCellsD1+ bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward 0 2983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor1_CNhs11092_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_tpm_fwd TrachealEpithelialCellsD1+ bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward 1 2983 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor1_CNhs11092_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF180DCG ENCSR407QDX Peak bigBed 5 Activated T-cell male adult 38 years H3K27ac peak 4 2984 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/27/2df9e52d-8363-430d-8720-a1dde8d8ac55/ENCFF180DCG.bigBed\ color 181,145,0\ longLabel Activated T-cell male adult 38 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR407QDX Peak\ track wgEncodeReg4Epigenetics_ENCFF180DCG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF103BGK ENCSR444LIN Signal bigWig HepG2 TCF7 ENCSR444LIN signal 2 2984 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/7ad93f5d-2077-4196-9f2c-81d58ffeb6cc/ENCFF103BGK.bigWig\ color 137,152,82\ longLabel HepG2 TCF7 ENCSR444LIN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR444LIN Signal\ track wgEncodeReg4TfChip_ENCFF103BGK\ type bigWig\ visibility full\ TrachealEpithelialCellsDonor1_CNhs11092_ctss_rev TrachealEpithelialCellsD1- bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse 0 2984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor1_CNhs11092_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor1_CNhs11092_tpm_rev TrachealEpithelialCellsD1- bigWig Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse 1 2984 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor1.CNhs11092.11292-117A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor1_CNhs11092_11292-117A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11292-117A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor1_CNhs11092_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11292-117A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF356ZKI ENCSR407QDX Signal bigWig Activated T-cell male adult 38 years H3K27ac signal 2 2985 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/886d42a6-8217-4bab-8180-6ff40d9ceba2/ENCFF356ZKI.bigWig\ color 181,145,0\ longLabel Activated T-cell male adult 38 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR407QDX Signal\ track wgEncodeReg4Epigenetics_ENCFF356ZKI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF231PAK ENCSR445ACU Peak bigBed 5 HepG2 SOX13 peaks 4 2985 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/7a228bba-4b8a-4281-805a-d861d91242f0/ENCFF231PAK.bigBed\ labelFields none\ longLabel HepG2 SOX13 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445ACU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF231PAK\ type bigBed 5\ useScore 1\ visibility squish\ TrachealEpithelialCellsDonor2_CNhs11993_ctss_fwd TrachealEpithelialCellsD2+ bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward 0 2985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor2.CNhs11993.11369-118A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11369-118A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor2_CNhs11993_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor2_CNhs11993_tpm_fwd TrachealEpithelialCellsD2+ bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward 1 2985 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor2.CNhs11993.11369-118A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11369-118A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor2_CNhs11993_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF169UNI ENCSR407WGG Peak bigBed 5 Natural killer cell female adult 41 years DNase peak 4 2986 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/b5d92aef-5ab6-4afd-b534-ac0d46f43b0c/ENCFF169UNI.bigBed\ color 6,218,147\ labelFields none\ longLabel Natural killer cell female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR407WGG Peak\ track wgEncodeReg4Epigenetics_ENCFF169UNI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF836RVM ENCSR445ACU Signal bigWig HepG2 SOX13 ENCSR445ACU signal 2 2986 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/aa13e9d9-7e56-4f28-b2b4-ea31c1f29009/ENCFF836RVM.bigWig\ color 137,152,82\ longLabel HepG2 SOX13 ENCSR445ACU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445ACU Signal\ track wgEncodeReg4TfChip_ENCFF836RVM\ type bigWig\ visibility full\ TrachealEpithelialCellsDonor2_CNhs11993_ctss_rev TrachealEpithelialCellsD2- bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_reverse 0 2986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor2.CNhs11993.11369-118A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11369-118A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor2_CNhs11993_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor2_CNhs11993_tpm_rev TrachealEpithelialCellsD2- bigWig Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_reverse 1 2986 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor2.CNhs11993.11369-118A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor2_CNhs11993_11369-118A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11369-118A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor2_CNhs11993_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11369-118A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF342GNP ENCSR407WGG Signal bigWig Natural killer cell female adult 41 years DNase signal 2 2987 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/8ea2611c-ebd0-4b62-9754-3a3801d04333/ENCFF342GNP.bigWig\ color 6,218,147\ longLabel Natural killer cell female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR407WGG Signal\ track wgEncodeReg4Epigenetics_ENCFF342GNP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF148XDC ENCSR445FHB Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXF2 FOXF2 peaks 4 2987 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/0023d3db-90c0-4cf7-8160-bfd92fbfe32a/ENCFF148XDC.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXF2 FOXF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445FHB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF148XDC\ type bigBed 5\ useScore 1\ visibility squish\ TrachealEpithelialCellsDonor3_CNhs12051_ctss_fwd TrachealEpithelialCellsD3+ bigWig Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_forward 0 2987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor3.CNhs12051.11441-118I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11441-118I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor3_CNhs12051_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor3_CNhs12051_tpm_fwd TrachealEpithelialCellsD3+ bigWig Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_forward 1 2987 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor3.CNhs12051.11441-118I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11441-118I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track TrachealEpithelialCellsDonor3_CNhs12051_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF551MLS ENCSR408CSV Peak bigBed 5 Brain organoid female embryo 5 days, 30 days post differentiation H3K27ac peak 4 2988 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/e8d7d8fe-9dbb-4cbf-9365-5bf76ff60b3a/ENCFF551MLS.bigBed\ color 181,145,0\ longLabel Brain organoid female embryo 5 days, 30 days post differentiation H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408CSV Peak\ track wgEncodeReg4Epigenetics_ENCFF551MLS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF495AQV ENCSR445FHB Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXF2 FOXF2 ENCSR445FHB signal 2 2988 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/db893b0d-8f0b-4e38-aff7-ec892a93dbce/ENCFF495AQV.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOXF2 FOXF2 ENCSR445FHB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445FHB Signal\ track wgEncodeReg4TfChip_ENCFF495AQV\ type bigWig\ visibility full\ TrachealEpithelialCellsDonor3_CNhs12051_ctss_rev TrachealEpithelialCellsD3- bigWig Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_reverse 0 2988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor3.CNhs12051.11441-118I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11441-118I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TrachealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor3_CNhs12051_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1\ urlLabel FANTOM5 Details:\ TrachealEpithelialCellsDonor3_CNhs12051_tpm_rev TrachealEpithelialCellsD3- bigWig Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_reverse 1 2988 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Tracheal%20Epithelial%20Cells%2c%20donor3.CNhs12051.11441-118I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Tracheal Epithelial Cells, donor3_CNhs12051_11441-118I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11441-118I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TrachealEpithelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track TrachealEpithelialCellsDonor3_CNhs12051_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11441-118I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF768ANE ENCSR408CSV Signal bigWig Brain organoid female embryo 5 days, 30 days post differentiation H3K27ac signal 2 2989 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/bd4aa399-5b78-40c4-a82b-920923060b7d/ENCFF768ANE.bigWig\ color 181,145,0\ longLabel Brain organoid female embryo 5 days, 30 days post differentiation H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408CSV Signal\ track wgEncodeReg4Epigenetics_ENCFF768ANE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF282ONV ENCSR445NJB Peak bigBed 5 Middle frontal area 46 tissue female adult (78 years) CTCF peaks 4 2989 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/a5fee8ef-c234-4abd-ae5b-1c0e8e6cfa66/ENCFF282ONV.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (78 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445NJB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF282ONV\ type bigBed 5\ useScore 1\ visibility squish\ UrothelialCellsDonor0_CNhs10843_ctss_fwd UrothelialCellsD0+ bigWig Urothelial cells, donor0_CNhs10843_11216-116B1_forward 0 2989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20cells%2c%20donor0.CNhs10843.11216-116B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Urothelial cells, donor0_CNhs10843_11216-116B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11216-116B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor0_CNhs10843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor0_CNhs10843_tpm_fwd UrothelialCellsD0+ bigWig Urothelial cells, donor0_CNhs10843_11216-116B1_forward 1 2989 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20cells%2c%20donor0.CNhs10843.11216-116B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Urothelial cells, donor0_CNhs10843_11216-116B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11216-116B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD0+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor0_CNhs10843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF907NNX ENCSR408GYQ Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-17A for 4 hours DNase peak 4 2990 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/9d6e8f01-29b1-416e-88fd-68175eb68896/ENCFF907NNX.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-17A for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408GYQ Peak\ track wgEncodeReg4Epigenetics_ENCFF907NNX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF203LSD ENCSR445NJB Signal bigWig Middle frontal area 46 tissue female adult (78 years) CTCF ENCSR445NJB signal 2 2990 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/c2e63863-d2e3-4a32-8d24-ee2ec71ae233/ENCFF203LSD.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (78 years) CTCF ENCSR445NJB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445NJB Signal\ track wgEncodeReg4TfChip_ENCFF203LSD\ type bigWig\ visibility full\ UrothelialCellsDonor0_CNhs10843_ctss_rev UrothelialCellsD0- bigWig Urothelial cells, donor0_CNhs10843_11216-116B1_reverse 0 2990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20cells%2c%20donor0.CNhs10843.11216-116B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Urothelial cells, donor0_CNhs10843_11216-116B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11216-116B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor0_CNhs10843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor0_CNhs10843_tpm_rev UrothelialCellsD0- bigWig Urothelial cells, donor0_CNhs10843_11216-116B1_reverse 1 2990 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20cells%2c%20donor0.CNhs10843.11216-116B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Urothelial cells, donor0_CNhs10843_11216-116B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11216-116B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD0-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor0_CNhs10843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11216-116B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF253YZY ENCSR408GYQ Signal bigWig CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-17A for 4 hours DNase signal 2 2991 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/8f341a60-bbc5-4d7d-a19b-41f5b7aba9d3/ENCFF253YZY.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-17A for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408GYQ Signal\ track wgEncodeReg4Epigenetics_ENCFF253YZY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF264FBS ENCSR445PDR Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GFI1B GFI1B peaks 4 2991 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/b94eda1b-fae6-433e-ade4-38829161cceb/ENCFF264FBS.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GFI1B GFI1B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445PDR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF264FBS\ type bigBed 5\ useScore 1\ visibility squish\ UrothelialCellsDonor1_CNhs11334_ctss_fwd UrothelialCellsD1+ bigWig Urothelial Cells, donor1_CNhs11334_11520-119H8_forward 0 2991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor1.CNhs11334.11520-119H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Urothelial Cells, donor1_CNhs11334_11520-119H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11520-119H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor1_CNhs11334_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor1_CNhs11334_tpm_fwd UrothelialCellsD1+ bigWig Urothelial Cells, donor1_CNhs11334_11520-119H8_forward 1 2991 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor1.CNhs11334.11520-119H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Urothelial Cells, donor1_CNhs11334_11520-119H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11520-119H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor1_CNhs11334_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF628NXP ENCSR408IVU Peak bigBed 5 GM21526 ATAC peak 4 2992 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e311e3c5-84af-4a18-a955-6538ad9eab62/ENCFF628NXP.bigBed\ color 2,199,185\ longLabel GM21526 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408IVU Peak\ track wgEncodeReg4Epigenetics_ENCFF628NXP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF128NOO ENCSR445PDR Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GFI1B GFI1B ENCSR445PDR signal 2 2992 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/8cabfdea-4b4b-4dd5-a0ca-b6d48aecb072/ENCFF128NOO.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GFI1B GFI1B ENCSR445PDR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445PDR Signal\ track wgEncodeReg4TfChip_ENCFF128NOO\ type bigWig\ visibility full\ UrothelialCellsDonor1_CNhs11334_ctss_rev UrothelialCellsD1- bigWig Urothelial Cells, donor1_CNhs11334_11520-119H8_reverse 0 2992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor1.CNhs11334.11520-119H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Urothelial Cells, donor1_CNhs11334_11520-119H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11520-119H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor1_CNhs11334_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor1_CNhs11334_tpm_rev UrothelialCellsD1- bigWig Urothelial Cells, donor1_CNhs11334_11520-119H8_reverse 1 2992 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor1.CNhs11334.11520-119H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Urothelial Cells, donor1_CNhs11334_11520-119H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11520-119H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor1_CNhs11334_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11520-119H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF903JQB ENCSR408IVU Signal bigWig GM21526 ATAC signal 2 2993 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/bd2f909c-af36-4a01-9919-8bbb7ad4f424/ENCFF903JQB.bigWig\ color 2,199,185\ longLabel GM21526 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408IVU Signal\ track wgEncodeReg4Epigenetics_ENCFF903JQB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF449HPV ENCSR445QRF Peak bigBed 5 Liver tissue female child (4 years) HNF4A peaks 4 2993 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/aa9b143a-8fc6-4ac8-8571-cc9bc098c0bd/ENCFF449HPV.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) HNF4A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445QRF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF449HPV\ type bigBed 5\ useScore 1\ visibility squish\ UrothelialCellsDonor2_CNhs12091_ctss_fwd UrothelialCellsD2+ bigWig Urothelial Cells, donor2_CNhs12091_11600-120H7_forward 0 2993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor2.CNhs12091.11600-120H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Urothelial Cells, donor2_CNhs12091_11600-120H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11600-120H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor2_CNhs12091_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor2_CNhs12091_tpm_fwd UrothelialCellsD2+ bigWig Urothelial Cells, donor2_CNhs12091_11600-120H7_forward 1 2993 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor2.CNhs12091.11600-120H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Urothelial Cells, donor2_CNhs12091_11600-120H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11600-120H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor2_CNhs12091_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF798MEO ENCSR408XTO Peak bigBed 5 Body of pancreas tissue female adult 51 years CTCF peak 4 2994 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/aa46fc27-f288-4a23-9e19-ece988f301c2/ENCFF798MEO.bigBed\ color 0,176,240\ labelFields none\ longLabel Body of pancreas tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408XTO Peak\ track wgEncodeReg4Epigenetics_ENCFF798MEO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF920KHC ENCSR445QRF Signal bigWig Liver tissue female child (4 years) HNF4A ENCSR445QRF signal 2 2994 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/f32057b8-e426-487e-966d-9b065fa5826c/ENCFF920KHC.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) HNF4A ENCSR445QRF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR445QRF Signal\ track wgEncodeReg4TfChip_ENCFF920KHC\ type bigWig\ visibility full\ UrothelialCellsDonor2_CNhs12091_ctss_rev UrothelialCellsD2- bigWig Urothelial Cells, donor2_CNhs12091_11600-120H7_reverse 0 2994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor2.CNhs12091.11600-120H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Urothelial Cells, donor2_CNhs12091_11600-120H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11600-120H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor2_CNhs12091_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor2_CNhs12091_tpm_rev UrothelialCellsD2- bigWig Urothelial Cells, donor2_CNhs12091_11600-120H7_reverse 1 2994 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor2.CNhs12091.11600-120H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Urothelial Cells, donor2_CNhs12091_11600-120H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11600-120H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor2_CNhs12091_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11600-120H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF893BCC ENCSR408XTO Signal bigWig Body of pancreas tissue female adult 51 years CTCF signal 2 2995 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2d98af56-c6d8-4244-bbce-1484f55add6f/ENCFF893BCC.bigWig\ color 0,176,240\ longLabel Body of pancreas tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR408XTO Signal\ track wgEncodeReg4Epigenetics_ENCFF893BCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF205RDN ENCSR446LAV Peak bigBed 5 K562 DDX20 peaks 4 2995 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/49253e97-a095-4dfe-9745-f6f1a235463e/ENCFF205RDN.bigBed\ labelFields none\ longLabel K562 DDX20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR446LAV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF205RDN\ type bigBed 5\ useScore 1\ visibility squish\ UrothelialCellsDonor3_CNhs12122_ctss_fwd UrothelialCellsD3+ bigWig Urothelial Cells, donor3_CNhs12122_11681-122H7_forward 0 2995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor3.CNhs12122.11681-122H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Urothelial Cells, donor3_CNhs12122_11681-122H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11681-122H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor3_CNhs12122_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor3_CNhs12122_tpm_fwd UrothelialCellsD3+ bigWig Urothelial Cells, donor3_CNhs12122_11681-122H7_forward 1 2995 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor3.CNhs12122.11681-122H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Urothelial Cells, donor3_CNhs12122_11681-122H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=11681-122H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track UrothelialCellsDonor3_CNhs12122_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF701KTT ENCSR409YCK Peak bigBed 5 GM19043 ATAC peak 4 2996 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/64b50515-9066-4cf9-aec7-22c0a68c59d0/ENCFF701KTT.bigBed\ color 2,199,185\ longLabel GM19043 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR409YCK Peak\ track wgEncodeReg4Epigenetics_ENCFF701KTT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF215WHM ENCSR446LAV Signal bigWig K562 DDX20 ENCSR446LAV signal 2 2996 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/9642ea81-2a11-4818-b720-81322024c8e3/ENCFF215WHM.bigWig\ color 254,75,173\ longLabel K562 DDX20 ENCSR446LAV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR446LAV Signal\ track wgEncodeReg4TfChip_ENCFF215WHM\ type bigWig\ visibility full\ UrothelialCellsDonor3_CNhs12122_ctss_rev UrothelialCellsD3- bigWig Urothelial Cells, donor3_CNhs12122_11681-122H7_reverse 0 2996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor3.CNhs12122.11681-122H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Urothelial Cells, donor3_CNhs12122_11681-122H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11681-122H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor3_CNhs12122_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7\ urlLabel FANTOM5 Details:\ UrothelialCellsDonor3_CNhs12122_tpm_rev UrothelialCellsD3- bigWig Urothelial Cells, donor3_CNhs12122_11681-122H7_reverse 1 2996 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urothelial%20Cells%2c%20donor3.CNhs12122.11681-122H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Urothelial Cells, donor3_CNhs12122_11681-122H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=11681-122H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrothelialCellsD3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track UrothelialCellsDonor3_CNhs12122_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:11681-122H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF575ZRJ ENCSR409YCK Signal bigWig GM19043 ATAC signal 2 2997 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a0971ba6-ebf5-4951-adaa-1cd581fb5976/ENCFF575ZRJ.bigWig\ color 2,199,185\ longLabel GM19043 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR409YCK Signal\ track wgEncodeReg4Epigenetics_ENCFF575ZRJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF383OZM ENCSR447ANW Peak bigBed 5 Coronary artery tissue female adult (51 years) CTCF peaks 4 2997 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/57ee69e6-e74c-469b-8ee8-49ab4f6a0180/ENCFF383OZM.bigBed\ labelFields none\ longLabel Coronary artery tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR447ANW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF383OZM\ type bigBed 5\ useScore 1\ visibility squish\ WholeBloodRibopureDonor090309Donation1_CNhs11675_ctss_fwd WholeBloodD090309Dn1+ bigWig Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_forward 0 2997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation1.CNhs11675.12179-129A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12179-129A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090309Dn1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090309Donation1_CNhs11675_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090309Donation1_CNhs11675_tpm_fwd WholeBloodD090309Dn1+ bigWig Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_forward 1 2997 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation1.CNhs11675.12179-129A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12179-129A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090309Dn1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090309Donation1_CNhs11675_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF884KXS ENCSR409ZBD Peak bigBed 5 Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase peak 4 2998 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/0de9cb81-0ae9-419b-9b05-037918b767c2/ENCFF884KXS.bigBed\ color 6,218,147\ labelFields none\ longLabel Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR409ZBD Peak\ track wgEncodeReg4Epigenetics_ENCFF884KXS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF481WXK ENCSR447ANW Signal bigWig Coronary artery tissue female adult (51 years) CTCF ENCSR447ANW signal 2 2998 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/b64e8703-ab44-4d76-8e39-9e01bb7bb981/ENCFF481WXK.bigWig\ color 255,37,41\ longLabel Coronary artery tissue female adult (51 years) CTCF ENCSR447ANW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR447ANW Signal\ track wgEncodeReg4TfChip_ENCFF481WXK\ type bigWig\ visibility full\ WholeBloodRibopureDonor090309Donation1_CNhs11675_ctss_rev WholeBloodD090309Dn1- bigWig Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_reverse 0 2998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation1.CNhs11675.12179-129A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12179-129A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090309Dn1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090309Donation1_CNhs11675_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090309Donation1_CNhs11675_tpm_rev WholeBloodD090309Dn1- bigWig Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_reverse 1 2998 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation1.CNhs11675.12179-129A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090309, donation1_CNhs11675_12179-129A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12179-129A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090309Dn1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090309Donation1_CNhs11675_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12179-129A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF119DCK ENCSR409ZBD Signal bigWig Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase signal 2 2999 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/4795d704-a913-4a72-86b2-13c7248a9ed8/ENCFF119DCK.bigWig\ color 6,218,147\ longLabel Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR409ZBD Signal\ track wgEncodeReg4Epigenetics_ENCFF119DCK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF994JWH ENCSR447ZTA Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF558 ZNF558 peaks 4 2999 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/97337dd2-638f-441a-824b-efd7180ce13c/ENCFF994JWH.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF558 ZNF558 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR447ZTA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF994JWH\ type bigBed 5\ useScore 1\ visibility squish\ WholeBloodRibopureDonor090309Donation2_CNhs11671_ctss_fwd WholeBloodD090309Dn2+ bigWig Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_forward 0 2999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation2.CNhs11671.12180-129A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12180-129A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090309Dn2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090309Donation2_CNhs11671_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090309Donation2_CNhs11671_tpm_fwd WholeBloodD090309Dn2+ bigWig Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_forward 1 2999 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation2.CNhs11671.12180-129A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12180-129A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090309Dn2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090309Donation2_CNhs11671_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF323KMY ENCSR410DWV Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 3000 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/ad91729b-ef5c-4f62-8171-4c70fe4c73e6/ENCFF323KMY.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR410DWV Peak\ track wgEncodeReg4Epigenetics_ENCFF323KMY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF434UKF ENCSR447ZTA Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF558 ZNF558 ENCSR447ZTA signal 2 3000 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/a80ad93b-aa2f-473c-a36a-da1c298fb0f9/ENCFF434UKF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF558 ZNF558 ENCSR447ZTA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR447ZTA Signal\ track wgEncodeReg4TfChip_ENCFF434UKF\ type bigWig\ visibility full\ WholeBloodRibopureDonor090309Donation2_CNhs11671_ctss_rev WholeBloodD090309Dn2- bigWig Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_reverse 0 3000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation2.CNhs11671.12180-129A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12180-129A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090309Dn2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090309Donation2_CNhs11671_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090309Donation2_CNhs11671_tpm_rev WholeBloodD090309Dn2- bigWig Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_reverse 1 3000 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation2.CNhs11671.12180-129A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090309, donation2_CNhs11671_12180-129A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12180-129A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090309Dn2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090309Donation2_CNhs11671_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12180-129A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF345PTN ENCSR410DWV Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 3001 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/783a9a9b-fe26-4ac7-a5d8-e0fae4ee914b/ENCFF345PTN.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR410DWV Signal\ track wgEncodeReg4Epigenetics_ENCFF345PTN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF747BVA ENCSR448RAP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552 ZNF552 peaks 4 3001 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/6f94e679-cab8-4fd9-9615-2dbc6d8f79f2/ENCFF747BVA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552 ZNF552 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR448RAP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF747BVA\ type bigBed 5\ useScore 1\ visibility squish\ WholeBloodRibopureDonor090309Donation3_CNhs11948_ctss_fwd WholeBloodD090309Dn3+ bigWig Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_forward 0 3001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation3.CNhs11948.12181-129A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12181-129A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090309Dn3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090309Donation3_CNhs11948_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090309Donation3_CNhs11948_tpm_fwd WholeBloodD090309Dn3+ bigWig Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_forward 1 3001 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation3.CNhs11948.12181-129A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12181-129A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090309Dn3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090309Donation3_CNhs11948_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF506YHJ ENCSR410IYF Peak bigBed 5 T-cell male adult 28 years DNase peak 4 3002 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c4ae860d-989e-4f84-8145-6319fcd29c0c/ENCFF506YHJ.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 28 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR410IYF Peak\ track wgEncodeReg4Epigenetics_ENCFF506YHJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF309QDX ENCSR448RAP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552 ZNF552 ENCSR448RAP signal 2 3002 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/ee34da77-b6ce-4e11-bfcc-787668e679c5/ENCFF309QDX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF552 ZNF552 ENCSR448RAP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR448RAP Signal\ track wgEncodeReg4TfChip_ENCFF309QDX\ type bigWig\ visibility full\ WholeBloodRibopureDonor090309Donation3_CNhs11948_ctss_rev WholeBloodD090309Dn3- bigWig Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_reverse 0 3002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation3.CNhs11948.12181-129A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12181-129A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090309Dn3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090309Donation3_CNhs11948_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090309Donation3_CNhs11948_tpm_rev WholeBloodD090309Dn3- bigWig Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_reverse 1 3002 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090309%2c%20donation3.CNhs11948.12181-129A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090309, donation3_CNhs11948_12181-129A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12181-129A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090309Dn3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090309Donation3_CNhs11948_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12181-129A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF319JVY ENCSR410IYF Signal bigWig T-cell male adult 28 years DNase signal 2 3003 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/e1e7779b-1bc1-4e7b-b661-3eaf9caa8734/ENCFF319JVY.bigWig\ color 6,218,147\ longLabel T-cell male adult 28 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR410IYF Signal\ track wgEncodeReg4Epigenetics_ENCFF319JVY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF195CES ENCSR448TVS Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 peaks 4 3003 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5f2f4d6e-0ac9-4c3d-a6d1-088400200966/ENCFF195CES.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR448TVS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF195CES\ type bigBed 5\ useScore 1\ visibility squish\ WholeBloodRibopureDonor090325Donation1_CNhs11075_ctss_fwd WholeBloodD090325Dn1+ bigWig Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_forward 0 3003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation1.CNhs11075.12176-128I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12176-128I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090325Dn1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090325Donation1_CNhs11075_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090325Donation1_CNhs11075_tpm_fwd WholeBloodD090325Dn1+ bigWig Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_forward 1 3003 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation1.CNhs11075.12176-128I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12176-128I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090325Dn1+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090325Donation1_CNhs11075_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF333PRU ENCSR410MFU Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 88 years DNase peak 4 3004 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/39174825-2688-4edc-85fb-07052c661c49/ENCFF333PRU.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 88 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR410MFU Peak\ track wgEncodeReg4Epigenetics_ENCFF333PRU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF606VQQ ENCSR448TVS Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 ENCSR448TVS signal 2 3004 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/0b284ddd-0e7a-486e-829e-3a596420077e/ENCFF606VQQ.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL2 FOSL2 ENCSR448TVS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR448TVS Signal\ track wgEncodeReg4TfChip_ENCFF606VQQ\ type bigWig\ visibility full\ WholeBloodRibopureDonor090325Donation1_CNhs11075_ctss_rev WholeBloodD090325Dn1- bigWig Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_reverse 0 3004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation1.CNhs11075.12176-128I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12176-128I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090325Dn1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090325Donation1_CNhs11075_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090325Donation1_CNhs11075_tpm_rev WholeBloodD090325Dn1- bigWig Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_reverse 1 3004 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation1.CNhs11075.12176-128I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090325, donation1_CNhs11075_12176-128I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12176-128I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090325Dn1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090325Donation1_CNhs11075_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12176-128I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF308ARF ENCSR410MFU Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 88 years DNase signal 2 3005 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/a837e96d-d9a2-47f4-81c1-e21047024bec/ENCFF308ARF.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 88 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR410MFU Signal\ track wgEncodeReg4Epigenetics_ENCFF308ARF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF387ETI ENCSR448UKK Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8 ZKSCAN8 peaks 4 3005 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d6d4ce99-bea0-4a50-9815-bcca47b9ca88/ENCFF387ETI.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8 ZKSCAN8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR448UKK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF387ETI\ type bigBed 5\ useScore 1\ visibility squish\ WholeBloodRibopureDonor090325Donation2_CNhs11076_ctss_fwd WholeBloodD090325Dn2+ bigWig Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_forward 0 3005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation2.CNhs11076.12177-128I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12177-128I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090325Dn2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090325Donation2_CNhs11076_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090325Donation2_CNhs11076_tpm_fwd WholeBloodD090325Dn2+ bigWig Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_forward 1 3005 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation2.CNhs11076.12177-128I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12177-128I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090325Dn2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090325Donation2_CNhs11076_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF324DLM ENCSR411MGY Signal bigWig Muscle of trunk tissue female embryo 121 days DNase signal 2 3006 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/512cfcae-6feb-4d54-8afa-b9b0ebbdd9cf/ENCFF324DLM.bigWig\ color 6,218,147\ longLabel Muscle of trunk tissue female embryo 121 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR411MGY Signal\ track wgEncodeReg4Epigenetics_ENCFF324DLM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF972YFP ENCSR448UKK Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8 ZKSCAN8 ENCSR448UKK signal 2 3006 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a4d1a55c-575c-4eff-b8a3-b1909ad80c67/ENCFF972YFP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8 ZKSCAN8 ENCSR448UKK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR448UKK Signal\ track wgEncodeReg4TfChip_ENCFF972YFP\ type bigWig\ visibility full\ WholeBloodRibopureDonor090325Donation2_CNhs11076_ctss_rev WholeBloodD090325Dn2- bigWig Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_reverse 0 3006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation2.CNhs11076.12177-128I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12177-128I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090325Dn2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090325Donation2_CNhs11076_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090325Donation2_CNhs11076_tpm_rev WholeBloodD090325Dn2- bigWig Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_reverse 1 3006 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation2.CNhs11076.12177-128I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090325, donation2_CNhs11076_12177-128I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12177-128I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090325Dn2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090325Donation2_CNhs11076_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12177-128I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF693GXV ENCSR411NFB Peak bigBed 5 Activated T-cell female adult 33 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours ATAC peak 4 3007 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/18958492-1947-41b1-a726-67e01b462678/ENCFF693GXV.bigBed\ color 2,199,185\ longLabel Activated T-cell female adult 33 years treated with 50 U/mL Interleukin-2 for 4 hours, anti-CD3 and anti-CD28 coated beads for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR411NFB Peak\ track wgEncodeReg4Epigenetics_ENCFF693GXV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF986BNJ ENCSR449SEF Peak bigBed 5 Transverse colon tissue female adult (51 years) CTCF peaks 4 3007 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/09/07/7257c906-c3c6-40ee-a080-9f35876eeb0e/ENCFF986BNJ.bigBed\ labelFields none\ longLabel Transverse colon tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
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longLabel Transverse colon tissue female adult (51 years) CTCF ENCSR449SEF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR449SEF Signal\ track wgEncodeReg4TfChip_ENCFF626YRZ\ type bigWig\ visibility full\ WholeBloodRibopureDonor090612Donation1_CNhs11672_ctss_rev WholeBloodD090612Dn1- bigWig Whole blood (ribopure), donor090612, donation1_CNhs11672_12182-129A4_reverse 0 3008 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12182-129A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation1.CNhs11672.12182-129A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090612, donation1_CNhs11672_12182-129A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12182-129A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090612Dn1-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track 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FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF395NGH ENCSR412NMI Peak bigBed 5 Left cardiac atrium tissue female embryo 101 days DNase peak 4 3009 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/1f93d129-2bf9-422c-b7f5-6d3ac78be32f/ENCFF395NGH.bigBed\ color 6,218,147\ labelFields none\ longLabel Left cardiac atrium tissue female embryo 101 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR412NMI Peak\ track wgEncodeReg4Epigenetics_ENCFF395NGH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF247MBY ENCSR449UFF Peak bigBed 5 MCF-7 ZKSCAN1 peaks 4 3009 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/6be8c9fa-7b77-4376-8220-9dc5324a29ec/ENCFF247MBY.bigBed\ labelFields none\ longLabel MCF-7 ZKSCAN1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR449UFF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF247MBY\ type bigBed 5\ useScore 1\ visibility squish\ WholeBloodRibopureDonor090612Donation2_CNhs11673_ctss_fwd WholeBloodD090612Dn2+ bigWig Whole blood (ribopure), donor090612, donation2_CNhs11673_12183-129A5_forward 0 3009 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12183-129A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation2.CNhs11673.12183-129A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090612, donation2_CNhs11673_12183-129A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12183-129A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090612Dn2+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090612Donation2_CNhs11673_ctss_fwd\ type bigWig\ url 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Left cardiac atrium tissue female embryo 101 days DNase signal 2 3010 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/eccd1867-65d0-4fd6-80b2-8fea49e79953/ENCFF584XQY.bigWig\ color 6,218,147\ longLabel Left cardiac atrium tissue female embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR412NMI Signal\ track wgEncodeReg4Epigenetics_ENCFF584XQY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF333UMV ENCSR449UFF Signal bigWig MCF-7 ZKSCAN1 ENCSR449UFF signal 2 3010 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/bd0bbd1a-859e-4913-8d1f-3ae7ba49358e/ENCFF333UMV.bigWig\ color 65,171,173\ longLabel MCF-7 ZKSCAN1 ENCSR449UFF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR449UFF Signal\ track wgEncodeReg4TfChip_ENCFF333UMV\ type bigWig\ visibility full\ WholeBloodRibopureDonor090612Donation2_CNhs11673_ctss_rev WholeBloodD090612Dn2- bigWig Whole blood (ribopure), donor090612, donation2_CNhs11673_12183-129A5_reverse 0 3010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12183-129A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation2.CNhs11673.12183-129A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090612, donation2_CNhs11673_12183-129A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12183-129A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090612Dn2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090612Donation2_CNhs11673_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12183-129A5\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090612Donation2_CNhs11673_tpm_rev WholeBloodD090612Dn2- bigWig Whole blood (ribopure), donor090612, donation2_CNhs11673_12183-129A5_reverse 1 3010 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12183-129A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation2.CNhs11673.12183-129A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090612, donation2_CNhs11673_12183-129A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12183-129A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090612Dn2-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090612Donation2_CNhs11673_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12183-129A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF449BZQ ENCSR413QLR Peak bigBed 5 Suprapubic skin tissue male adult 37 years H3K27ac peak 4 3011 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/e62ede4c-ec05-41fc-a0ab-4972f63c873f/ENCFF449BZQ.bigBed\ color 181,145,0\ longLabel Suprapubic skin tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR413QLR Peak\ track wgEncodeReg4Epigenetics_ENCFF449BZQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF886WNR ENCSR450BLH Peak bigBed 5 Adrenal gland tissue male adult (54 years) CTCF peaks 4 3011 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f4fb2288-f5a9-43cd-9bd9-e6a617c0693b/ENCFF886WNR.bigBed\ labelFields none\ longLabel Adrenal gland tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
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http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090612Donation3_CNhs11949_tpm_fwd WholeBloodD090612Dn3+ bigWig Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_forward 1 3011 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation3.CNhs11949.12184-129A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12184-129A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090612Dn3+\ subGroups sequenceTech=hCAGE category=primaryCell strand=forward\ track WholeBloodRibopureDonor090612Donation3_CNhs11949_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF634LYO ENCSR413QLR Signal bigWig Suprapubic skin tissue male adult 37 years H3K27ac signal 2 3012 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f44a018c-8214-44ee-8634-38702c89fb89/ENCFF634LYO.bigWig\ color 181,145,0\ longLabel Suprapubic skin tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR413QLR Signal\ track wgEncodeReg4Epigenetics_ENCFF634LYO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF035TJC ENCSR450BLH Signal bigWig Adrenal gland tissue male adult (54 years) CTCF ENCSR450BLH signal 2 3012 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/965cf543-e0d6-4c07-bbad-2b131c64c799/ENCFF035TJC.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue male adult (54 years) CTCF ENCSR450BLH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR450BLH Signal\ track wgEncodeReg4TfChip_ENCFF035TJC\ type bigWig\ visibility full\ WholeBloodRibopureDonor090612Donation3_CNhs11949_ctss_rev WholeBloodD090612Dn3- bigWig Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_reverse 0 3012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation3.CNhs11949.12184-129A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12184-129A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel WholeBloodD090612Dn3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090612Donation3_CNhs11949_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6\ urlLabel FANTOM5 Details:\ WholeBloodRibopureDonor090612Donation3_CNhs11949_tpm_rev WholeBloodD090612Dn3- bigWig Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_reverse 1 3012 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Whole%20blood%20%28ribopure%29%2c%20donor090612%2c%20donation3.CNhs11949.12184-129A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Whole blood (ribopure), donor090612, donation3_CNhs11949_12184-129A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12184-129A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel WholeBloodD090612Dn3-\ subGroups sequenceTech=hCAGE category=primaryCell strand=reverse\ track WholeBloodRibopureDonor090612Donation3_CNhs11949_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12184-129A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF853NOM ENCSR413QXO Peak bigBed 5 Large intestine tissue male embryo 108 days H3K4me3 peak 4 3013 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e4b45401-0d50-4266-b58e-0f5429cf38cd/ENCFF853NOM.bigBed\ color 255,0,0\ longLabel Large intestine tissue male embryo 108 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR413QXO Peak\ track wgEncodeReg4Epigenetics_ENCFF853NOM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF037IYT ENCSR450FRI Peak bigBed 5 Esophagus squamous epithelium tissue male adult (54 years) CTCF peaks 4 3013 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/af37433a-d312-47c9-8292-7d13d85be34b/ENCFF037IYT.bigBed\ labelFields none\ longLabel Esophagus squamous epithelium tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
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MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_tpm_fwd Mcf7ToEgf1_00hr00minBr1+ bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_forward 1 3013 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep1.CNhs12564.13031-139E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13031-139E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr1+\ subGroups sequenceTech=LQhCAGE category=timecourse strand=forward\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF839JMI ENCSR413QXO Signal bigWig Large intestine tissue male embryo 108 days H3K4me3 signal 2 3014 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d070b997-c10a-4591-b8a0-700e6bc8e65f/ENCFF839JMI.bigWig\ color 255,0,0\ longLabel Large intestine tissue male embryo 108 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR413QXO Signal\ track wgEncodeReg4Epigenetics_ENCFF839JMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF529SUF ENCSR450FRI Signal bigWig Esophagus squamous epithelium tissue male adult (54 years) CTCF ENCSR450FRI signal 2 3014 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/813d93d7-7675-4f24-bf0a-dd48dbcacf96/ENCFF529SUF.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue male adult (54 years) CTCF ENCSR450FRI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR450FRI Signal\ track wgEncodeReg4TfChip_ENCFF529SUF\ type bigWig\ visibility full\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_ctss_rev Mcf7ToEgf1_00hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse 0 3014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep1.CNhs12564.13031-139E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13031-139E7 sequence_tech=LQhCAGE\ parent TSS_activity_read_counts off\ shortLabel Mcf7ToEgf1_00hr00minBr1-\ subGroups sequenceTech=LQhCAGE category=timecourse strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7\ urlLabel FANTOM5 Details:\ MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_tpm_rev Mcf7ToEgf1_00hr00minBr1- bigWig MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse 1 3014 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/MCF7%20breast%20cancer%20cell%20line%20response%20to%20EGF1%2c%2000hr00min%2c%20biol_rep1.CNhs12564.13031-139E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1_CNhs12564_13031-139E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13031-139E7 sequence_tech=LQhCAGE\ parent TSS_activity_TPM off\ shortLabel Mcf7ToEgf1_00hr00minBr1-\ subGroups sequenceTech=LQhCAGE category=timecourse strand=reverse\ track MCF7BreastCancerCellLineResponseToEGF100hr00minBiolRep1_CNhs12564_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13031-139E7\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_fwd AorticSmsToFgf2_00hr00minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward 0 3015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_fwd AorticSmsToFgf2_00hr00minBr3+ bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward 1 3015 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF864GPE ENCSR413WJD Peak bigBed 5 Lung tissue embryo 101 days H3K4me3 peak 4 3015 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/86a7fcb0-c194-43ae-81f6-d6bb8d8c9934/ENCFF864GPE.bigBed\ color 255,0,0\ longLabel Lung tissue embryo 101 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR413WJD Peak\ track wgEncodeReg4Epigenetics_ENCFF864GPE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF420AXB ENCSR451CYX Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF280D ZNF280D peaks 4 3015 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/9ecaca41-7369-4e68-909c-fdec5691bfa7/ENCFF420AXB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF280D ZNF280D peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR451CYX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF420AXB\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_rev AorticSmsToFgf2_00hr00minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse 0 3016 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_rev AorticSmsToFgf2_00hr00minBr3- bigWig Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse 1 3016 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2000hr00min%2c%20biol_rep3%20%28LK3%29.CNhs13567.12838-137B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 00hr00min, biol_rep3 (LK3)_CNhs13567_12838-137B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12838-137B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF200hr00minBiolRep3LK3_CNhs13567_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12838-137B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF939ELA ENCSR413WJD Signal bigWig Lung tissue embryo 101 days H3K4me3 signal 2 3016 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/bec0ccb2-abb1-46e4-873d-d3712b27e388/ENCFF939ELA.bigWig\ color 255,0,0\ longLabel Lung tissue embryo 101 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR413WJD Signal\ track wgEncodeReg4Epigenetics_ENCFF939ELA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF737LJJ ENCSR451CYX Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF280D ZNF280D ENCSR451CYX signal 2 3016 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/815862b8-b265-457f-9f5d-5a07fd229101/ENCFF737LJJ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF280D ZNF280D ENCSR451CYX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR451CYX Signal\ track wgEncodeReg4TfChip_ENCFF737LJJ\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_fwd AorticSmsToFgf2_01hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward 0 3017 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_fwd AorticSmsToFgf2_01hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward 1 3017 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF099KMD ENCSR414DVK Peak bigBed 5 Adrenal gland tissue female adult 51 years ATAC peak 4 3017 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/1cdeb70d-722c-4494-aee7-4959fce2f52c/ENCFF099KMD.bigBed\ color 2,199,185\ longLabel Adrenal gland tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414DVK Peak\ track wgEncodeReg4Epigenetics_ENCFF099KMD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF662EUG ENCSR452KYY Peak bigBed 5 Middle frontal area 46 tissue male adult (84 years) CTCF peaks 4 3017 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/db233dee-bab4-4da0-8470-d4342f67877d/ENCFF662EUG.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue male adult (84 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR452KYY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF662EUG\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_rev AorticSmsToFgf2_01hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse 0 3018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_01hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_rev AorticSmsToFgf2_01hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse 1 3018 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2001hr%2c%20biol_rep2%20%28LK14%29.CNhs13362.12744-135I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 01hr, biol_rep2 (LK14)_CNhs13362_12744-135I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12744-135I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_01hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF201hrBiolRep2LK14_CNhs13362_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12744-135I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF096NDM ENCSR414DVK Signal bigWig Adrenal gland tissue female adult 51 years ATAC signal 2 3018 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/b4767f9a-43e8-4c7c-a061-efa672396744/ENCFF096NDM.bigWig\ color 2,199,185\ longLabel Adrenal gland tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414DVK Signal\ track wgEncodeReg4Epigenetics_ENCFF096NDM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF496PUD ENCSR452KYY Signal bigWig Middle frontal area 46 tissue male adult (84 years) CTCF ENCSR452KYY signal 2 3018 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/9a11e317-0bbf-4b15-92bf-3f839cc86b56/ENCFF496PUD.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue male adult (84 years) CTCF ENCSR452KYY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR452KYY Signal\ track wgEncodeReg4TfChip_ENCFF496PUD\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_fwd AorticSmsToFgf2_04hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward 0 3019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_fwd AorticSmsToFgf2_04hrBr1+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward 1 3019 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF993PAU ENCSR414IHC Peak bigBed 5 T-cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase peak 4 3019 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/b90daaa9-5ea8-4872-9792-84c7e02871f1/ENCFF993PAU.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414IHC Peak\ track wgEncodeReg4Epigenetics_ENCFF993PAU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF939VPY ENCSR452UFJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SPEN SPEN peaks 4 3019 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/169568bf-fa48-4226-9075-6f969824a630/ENCFF939VPY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SPEN SPEN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR452UFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF939VPY\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_rev AorticSmsToFgf2_04hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse 0 3020 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_rev AorticSmsToFgf2_04hrBr1- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse 1 3020 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep1%20%28LK22%29.CNhs13346.12649-134H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep1 (LK22)_CNhs13346_12649-134H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12649-134H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep1LK22_CNhs13346_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12649-134H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF738EYR ENCSR414IHC Signal bigWig T-cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase signal 2 3020 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/9f9a22ed-f59b-4887-a1a4-aee8986bf9ba/ENCFF738EYR.bigWig\ color 6,218,147\ longLabel T-cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414IHC Signal\ track wgEncodeReg4Epigenetics_ENCFF738EYR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF271PJQ ENCSR452UFJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SPEN SPEN ENCSR452UFJ signal 2 3020 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/f63f51ce-9efd-4e3c-9d03-f631dff91ce0/ENCFF271PJQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SPEN SPEN ENCSR452UFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR452UFJ Signal\ track wgEncodeReg4TfChip_ENCFF271PJQ\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_fwd AorticSmsToFgf2_04hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward 0 3021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_fwd AorticSmsToFgf2_04hrBr2+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward 1 3021 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF631VNA ENCSR414QLH Peak bigBed 5 T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 H3K27ac peak 4 3021 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/6aea7833-1426-48ca-ae6f-03f3cf1bcd26/ENCFF631VNA.bigBed\ color 181,145,0\ longLabel T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414QLH Peak\ track wgEncodeReg4Epigenetics_ENCFF631VNA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF606IUR ENCSR452YHM Peak bigBed 5 HepG2 SIN3B peaks 4 3021 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/5e71af60-5aad-415b-a044-c059190a6ae9/ENCFF606IUR.bigBed\ labelFields none\ longLabel HepG2 SIN3B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR452YHM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF606IUR\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_rev AorticSmsToFgf2_04hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse 0 3022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_rev AorticSmsToFgf2_04hrBr2- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse 1 3022 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep2%20%28LK23%29.CNhs13365.12747-136A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep2 (LK23)_CNhs13365_12747-136A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12747-136A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep2LK23_CNhs13365_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12747-136A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF489NSZ ENCSR414QLH Signal bigWig T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 H3K27ac signal 2 3022 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/6af5b362-9d07-4d83-8402-637ea8bd668c/ENCFF489NSZ.bigWig\ color 181,145,0\ longLabel T-helper 2 cell male adult 35 years treated with 5 μg/mL Interferon-gamma antibody , 100 ng/mL Interleukin-4 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414QLH Signal\ track wgEncodeReg4Epigenetics_ENCFF489NSZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF143RXY ENCSR452YHM Signal bigWig HepG2 SIN3B ENCSR452YHM signal 2 3022 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/b7d4c932-7831-4ed7-98f0-32b550529c72/ENCFF143RXY.bigWig\ color 137,152,82\ longLabel HepG2 SIN3B ENCSR452YHM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR452YHM Signal\ track wgEncodeReg4TfChip_ENCFF143RXY\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_fwd AorticSmsToFgf2_04hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward 0 3023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_fwd AorticSmsToFgf2_04hrBr3+ bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward 1 3023 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF741KNQ ENCSR414ZUA Peak bigBed 5 Right kidney tissue male embryo 108 days DNase peak 4 3023 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/bbbe1498-6cb8-45b5-bd8c-b50024dff3dd/ENCFF741KNQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Right kidney tissue male embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414ZUA Peak\ track wgEncodeReg4Epigenetics_ENCFF741KNQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF096OHS ENCSR454SCH Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 peaks 4 3023 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/6f26954e-a411-446f-9781-8cd07afddd58/ENCFF096OHS.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR454SCH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF096OHS\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_rev AorticSmsToFgf2_04hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse 0 3024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToFgf2_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_rev AorticSmsToFgf2_04hrBr3- bigWig Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse 1 3024 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20FGF2%2c%2004hr%2c%20biol_rep3%20%28LK24%29.CNhs13574.12845-137C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to FGF2, 04hr, biol_rep3 (LK24)_CNhs13574_12845-137C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12845-137C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToFgf2_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToFGF204hrBiolRep3LK24_CNhs13574_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12845-137C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF324HQU ENCSR414ZUA Signal bigWig Right kidney tissue male embryo 108 days DNase signal 2 3024 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/20b53d99-e105-4c3f-9b56-ea526b133169/ENCFF324HQU.bigWig\ color 6,218,147\ longLabel Right kidney tissue male embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR414ZUA Signal\ track wgEncodeReg4Epigenetics_ENCFF324HQU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF870SFV ENCSR454SCH Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 ENCSR454SCH signal 2 3024 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/25fa8969-40ab-4c35-a4dd-43ab1028baef/ENCFF870SFV.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 ENCSR454SCH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR454SCH Signal\ track wgEncodeReg4TfChip_ENCFF870SFV\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_fwd AorticSmsToIL1b_01hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward 0 3025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_fwd AorticSmsToIL1b_01hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward 1 3025 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF636NTS ENCSR416AUW Peak bigBed 5 Breast epithelium tissue female adult 53 years H3K4me3 peak 4 3025 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d2be24ab-35f0-41ae-adbc-9adb494c429d/ENCFF636NTS.bigBed\ color 255,0,0\ longLabel Breast epithelium tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR416AUW Peak\ track wgEncodeReg4Epigenetics_ENCFF636NTS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF310RFX ENCSR455DOO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RCOR2 RCOR2 peaks 4 3025 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/449f638c-ecc3-420b-888e-7b41f7dd0610/ENCFF310RFX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RCOR2 RCOR2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR455DOO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF310RFX\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_rev AorticSmsToIL1b_01hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse 0 3026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_01hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_rev AorticSmsToIL1b_01hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse 1 3026 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2001hr%2c%20biol_rep3%20%28LK45%29.CNhs13581.12852-137C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 01hr, biol_rep3 (LK45)_CNhs13581_12852-137C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12852-137C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_01hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b01hrBiolRep3LK45_CNhs13581_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12852-137C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF585QLC ENCSR416AUW Signal bigWig Breast epithelium tissue female adult 53 years H3K4me3 signal 2 3026 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8d991b0c-ca1c-4088-b826-8ba16664536c/ENCFF585QLC.bigWig\ color 255,0,0\ longLabel Breast epithelium tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR416AUW Signal\ track wgEncodeReg4Epigenetics_ENCFF585QLC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF034NUZ ENCSR455DOO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RCOR2 RCOR2 ENCSR455DOO signal 2 3026 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/bf36a0db-1052-4ee9-864c-aa4ffc1f316d/ENCFF034NUZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RCOR2 RCOR2 ENCSR455DOO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR455DOO Signal\ track wgEncodeReg4TfChip_ENCFF034NUZ\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_fwd AorticSmsToIL1b_02hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward 0 3027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_fwd AorticSmsToIL1b_02hrBr1+ bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward 1 3027 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF465VZE ENCSR417LPB Peak bigBed 5 Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 3027 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/9e223aaf-89c2-4395-b16a-0dfe377706f4/ENCFF465VZE.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR417LPB Peak\ track wgEncodeReg4Epigenetics_ENCFF465VZE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF910FNQ ENCSR458PYQ Peak bigBed 5 Type B pancreatic cell CTCF peaks 4 3027 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/1f9b3976-3c3b-4fa6-a8fd-d38a59013c8d/ENCFF910FNQ.bigBed\ labelFields none\ longLabel Type B pancreatic cell CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR458PYQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF910FNQ\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_rev AorticSmsToIL1b_02hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse 0 3028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_02hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_rev AorticSmsToIL1b_02hrBr1- bigWig Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse 1 3028 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2002hr%2c%20biol_rep1%20%28LK46%29.CNhs13354.12657-134I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 02hr, biol_rep1 (LK46)_CNhs13354_12657-134I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12657-134I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_02hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b02hrBiolRep1LK46_CNhs13354_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12657-134I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF706SQR ENCSR417LPB Signal bigWig Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 3028 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/b86bab0b-e99d-4470-af65-9bf081b67c48/ENCFF706SQR.bigWig\ color 6,218,147\ longLabel Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR417LPB Signal\ track wgEncodeReg4Epigenetics_ENCFF706SQR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF973VNM ENCSR458PYQ Signal bigWig Type B pancreatic cell CTCF ENCSR458PYQ signal 2 3028 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/8e05bf0c-b4f5-4a72-adb9-7fb8cbeef36c/ENCFF973VNM.bigWig\ color 175,100,41\ longLabel Type B pancreatic cell CTCF ENCSR458PYQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR458PYQ Signal\ track wgEncodeReg4TfChip_ENCFF973VNM\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_fwd AorticSmsToIL1b_03hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward 0 3029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_fwd AorticSmsToIL1b_03hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward 1 3029 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF507HNU ENCSR418JIS Peak bigBed 5 Layer of hippocampus tissue female adult 75 years H3K4me3 peak 4 3029 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/17c066a7-1220-4498-974e-fb5a6d6b2f8f/ENCFF507HNU.bigBed\ color 255,0,0\ longLabel Layer of hippocampus tissue female adult 75 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR418JIS Peak\ track wgEncodeReg4Epigenetics_ENCFF507HNU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF626IQJ ENCSR459FUE Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF peaks 4 3029 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/f12157e9-df21-491e-b1ff-95a9744e2882/ENCFF626IQJ.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR459FUE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF626IQJ\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_rev AorticSmsToIL1b_03hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse 0 3030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_03hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_rev AorticSmsToIL1b_03hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse 1 3030 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2003hr%2c%20biol_rep3%20%28LK51%29.CNhs13583.12854-137D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 03hr, biol_rep3 (LK51)_CNhs13583_12854-137D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12854-137D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_03hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b03hrBiolRep3LK51_CNhs13583_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12854-137D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF838MXD ENCSR418JIS Signal bigWig Layer of hippocampus tissue female adult 75 years H3K4me3 signal 2 3030 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/b22073a1-94c1-470e-bc81-3ba4cec9009c/ENCFF838MXD.bigWig\ color 255,0,0\ longLabel Layer of hippocampus tissue female adult 75 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR418JIS Signal\ track wgEncodeReg4Epigenetics_ENCFF838MXD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF374CDE ENCSR459FUE Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF ENCSR459FUE signal 2 3030 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/25377539-6a0a-4d13-8ffc-c85737b4f7ec/ENCFF374CDE.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ERF ERF ENCSR459FUE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR459FUE Signal\ track wgEncodeReg4TfChip_ENCFF374CDE\ type bigWig\ visibility full\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_fwd AorticSmsToIL1b_05hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward 0 3031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_fwd AorticSmsToIL1b_05hrBr3+ bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward 1 3031 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF701KWW ENCSR419ANE Peak bigBed 5 Peyer's patch tissue male adult 37 years CTCF peak 4 3031 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/b54ea2cb-99e6-47fb-ab79-78efd2ee8efa/ENCFF701KWW.bigBed\ color 0,176,240\ labelFields none\ longLabel Peyer's patch tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419ANE Peak\ track wgEncodeReg4Epigenetics_ENCFF701KWW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF821XVN ENCSR460LGH Peak bigBed 5 C4-2B CTCF peaks 4 3031 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/19b0c8ee-e69c-42e4-8c5a-7ebaf45da136/ENCFF821XVN.bigBed\ labelFields none\ longLabel C4-2B CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR460LGH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF821XVN\ type bigBed 5\ useScore 1\ visibility squish\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_rev AorticSmsToIL1b_05hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse 0 3032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AorticSmsToIL1b_05hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_rev AorticSmsToIL1b_05hrBr3- bigWig Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse 1 3032 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Aortic%20smooth%20muscle%20cell%20response%20to%20IL1b%2c%2005hr%2c%20biol_rep3%20%28LK57%29.CNhs13585.12856-137D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Aortic smooth muscle cell response to IL1b, 05hr, biol_rep3 (LK57)_CNhs13585_12856-137D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12856-137D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AorticSmsToIL1b_05hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track AorticSmoothMuscleCellResponseToIL1b05hrBiolRep3LK57_CNhs13585_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12856-137D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF758HAD ENCSR419ANE Signal bigWig Peyer's patch tissue male adult 37 years CTCF signal 2 3032 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/297f8c17-80ca-4d10-a67e-12325264843e/ENCFF758HAD.bigWig\ color 0,176,240\ longLabel Peyer's patch tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419ANE Signal\ track wgEncodeReg4Epigenetics_ENCFF758HAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF478SCD ENCSR460LGH Signal bigWig C4-2B CTCF ENCSR460LGH signal 2 3032 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7bc22980-76a6-4394-a801-a426c58d8b89/ENCFF478SCD.bigWig\ color 140,140,140\ longLabel C4-2B CTCF ENCSR460LGH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR460LGH Signal\ track wgEncodeReg4TfChip_ENCFF478SCD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF955JMH ENCSR419BDT Peak bigBed 5 Placenta tissue female embryo 113 days H3K4me3 peak 4 3033 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/06a799e3-cb3e-4621-aa0f-13c192823330/ENCFF955JMH.bigBed\ color 255,0,0\ longLabel Placenta tissue female embryo 113 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419BDT Peak\ track wgEncodeReg4Epigenetics_ENCFF955JMH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF524ADK ENCSR460MBI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB20 ZBTB20 peaks 4 3033 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/fb630f78-ba04-47da-bcd9-dfb62604b73d/ENCFF524ADK.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB20 ZBTB20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR460MBI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF524ADK\ type bigBed 5\ useScore 1\ visibility squish\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_fwd H9EmbryonicStemCellsBr1+ bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward 0 3033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_fwd H9EmbryonicStemCellsBr1+ bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward 1 3033 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF111SZU ENCSR419BDT Signal bigWig Placenta tissue female embryo 113 days H3K4me3 signal 2 3034 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ddd1961a-15a8-4b51-b5f7-8545bb685571/ENCFF111SZU.bigWig\ color 255,0,0\ longLabel Placenta tissue female embryo 113 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419BDT Signal\ track wgEncodeReg4Epigenetics_ENCFF111SZU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF960ARA ENCSR460MBI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB20 ZBTB20 ENCSR460MBI signal 2 3034 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/86a08282-5a88-4da9-bd8e-598bc4603611/ENCFF960ARA.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB20 ZBTB20 ENCSR460MBI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR460MBI Signal\ track wgEncodeReg4TfChip_ENCFF960ARA\ type bigWig\ visibility full\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_rev H9EmbryonicStemCellsBr1- bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse 0 3034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_rev H9EmbryonicStemCellsBr1- bigWig H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse 1 3034 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep1%20%28H9ES-1%29.CNhs11917.12626-134E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep1 (H9ES-1)_CNhs11917_12626-134E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12626-134E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep1H9ES1_CNhs11917_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12626-134E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF777OIW ENCSR419BNY Peak bigBed 5 Heart left ventricle tissue male adult 66 years H3K27ac peak 4 3035 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/b144417c-88a6-42e7-9e4c-3b5ffc2597db/ENCFF777OIW.bigBed\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 66 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419BNY Peak\ track wgEncodeReg4Epigenetics_ENCFF777OIW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF458MVB ENCSR460YAM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP1 SP1 peaks 4 3035 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/cedade83-2d36-4092-aca4-c455c92b1cb2/ENCFF458MVB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP1 SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR460YAM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF458MVB\ type bigBed 5\ useScore 1\ visibility squish\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_fwd H9EmbryonicStemCellsBr2+ bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward 0 3035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_fwd H9EmbryonicStemCellsBr2+ bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward 1 3035 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF111KQW ENCSR419BNY Signal bigWig Heart left ventricle tissue male adult 66 years H3K27ac signal 2 3036 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/7e77691c-4698-4f1e-8166-d281979cfa58/ENCFF111KQW.bigWig\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 66 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419BNY Signal\ track wgEncodeReg4Epigenetics_ENCFF111KQW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF572KHJ ENCSR460YAM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP1 SP1 ENCSR460YAM signal 2 3036 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/66feb8fc-bae2-49e0-8e00-c6f3b1cc9b2e/ENCFF572KHJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP1 SP1 ENCSR460YAM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR460YAM Signal\ track wgEncodeReg4TfChip_ENCFF572KHJ\ type bigWig\ visibility full\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_rev H9EmbryonicStemCellsBr2- bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse 0 3036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_rev H9EmbryonicStemCellsBr2- bigWig H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse 1 3036 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep2%20%28H9ES-2%29.CNhs12824.12724-135G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep2 (H9ES-2)_CNhs12824_12724-135G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12724-135G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep2H9ES2_CNhs12824_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12724-135G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF166XXE ENCSR419CKG Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase peak 4 3037 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/5c0d67ff-7fef-4b9f-ac56-f6c845168f06/ENCFF166XXE.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419CKG Peak\ track wgEncodeReg4Epigenetics_ENCFF166XXE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF837HCQ ENCSR461MQX Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens RARB RARB peaks 4 3037 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/4a5380b4-de96-4076-a7e7-5de6743dd98b/ENCFF837HCQ.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens RARB RARB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR461MQX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF837HCQ\ type bigBed 5\ useScore 1\ visibility squish\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_fwd H9EmbryonicStemCellsBr3+ bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward 0 3037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_fwd H9EmbryonicStemCellsBr3+ bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward 1 3037 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF369LDM ENCSR419CKG Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase signal 2 3038 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/3f6b4a6a-5614-4fa0-8654-047ff9234515/ENCFF369LDM.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419CKG Signal\ track wgEncodeReg4Epigenetics_ENCFF369LDM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF995WZQ ENCSR461MQX Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens RARB RARB ENCSR461MQX signal 2 3038 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/76bbe4b4-1ea0-4049-9ab2-a8116f29c790/ENCFF995WZQ.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens RARB RARB ENCSR461MQX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR461MQX Signal\ track wgEncodeReg4TfChip_ENCFF995WZQ\ type bigWig\ visibility full\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_rev H9EmbryonicStemCellsBr3- bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse 0 3038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel H9EmbryonicStemCellsBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_rev H9EmbryonicStemCellsBr3- bigWig H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse 1 3038 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H9%20Embryonic%20Stem%20cells%2c%20biol_rep3%20%28H9ES-3%29.CNhs12837.12822-136I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H9 Embryonic Stem cells, biol_rep3 (H9ES-3)_CNhs12837_12822-136I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12822-136I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel H9EmbryonicStemCellsBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H9EmbryonicStemCellsBiolRep3H9ES3_CNhs12837_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12822-136I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF079DVR ENCSR419KXU Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak 4 3039 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/7ee92494-a498-4313-803d-915b85de3ef9/ENCFF079DVR.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419KXU Peak\ track wgEncodeReg4Epigenetics_ENCFF079DVR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF558APA ENCSR461VHZ Peak bigBed 5 Astrocyte CTCF peaks 4 3039 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2bf52448-4919-4733-ab76-2edb945f77a5/ENCFF558APA.bigBed\ labelFields none\ longLabel Astrocyte CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR461VHZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF558APA\ type bigBed 5\ useScore 1\ visibility squish\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_fwd Hes3-gfpCardiomyocyticInduction_Day07Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward 0 3039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_fwd Hes3-gfpCardiomyocyticInduction_Day07Br1+ bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward 1 3039 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF675NNX ENCSR419KXU Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal 2 3040 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/9fa1af56-cae9-4c47-b743-84f7da4ea13e/ENCFF675NNX.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419KXU Signal\ track wgEncodeReg4Epigenetics_ENCFF675NNX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF569HGW ENCSR461VHZ Signal bigWig Astrocyte CTCF ENCSR461VHZ signal 2 3040 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/b7f42bfc-cddf-476a-9752-f124047dafaa/ENCFF569HGW.bigWig\ color 155,155,18\ longLabel Astrocyte CTCF ENCSR461VHZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR461VHZ Signal\ track wgEncodeReg4TfChip_ENCFF569HGW\ type bigWig\ visibility full\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_rev Hes3-gfpCardiomyocyticInduction_Day07Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse 0 3040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_rev Hes3-gfpCardiomyocyticInduction_Day07Br1- bigWig HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse 1 3040 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/HES3-GFP%20Embryonic%20Stem%20cells%2c%20cardiomyocytic%20induction%2c%20day07%2c%20biol_rep1.CNhs13659.13334-143C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel HES3-GFP Embryonic Stem cells, cardiomyocytic induction, day07, biol_rep1_CNhs13659_13334-143C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13334-143C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Hes3-gfpCardiomyocyticInduction_Day07Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HES3GFPEmbryonicStemCellsCardiomyocyticInductionDay07BiolRep1_CNhs13659_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13334-143C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF051BCE ENCSR419MZH Peak bigBed 5 Adrenal gland tissue female embryo 108 days DNase peak 4 3041 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/89b8a55e-0ff6-43de-8225-a7ccf6b10df7/ENCFF051BCE.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419MZH Peak\ track wgEncodeReg4Epigenetics_ENCFF051BCE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF066RAQ ENCSR461ZJT Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF501 ZNF501 peaks 4 3041 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/c3a0c7aa-377b-4317-8b83-84e10324f01d/ENCFF066RAQ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF501 ZNF501 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR461ZJT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF066RAQ\ type bigBed 5\ useScore 1\ visibility squish\ MelanocyteDonor1MC1_CNhs12816_ctss_fwd MelanocyteD1+ bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward 0 3041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor1MC1_CNhs12816_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_tpm_fwd MelanocyteD1+ bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward 1 3041 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor1MC1_CNhs12816_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF438OIC ENCSR419MZH Signal bigWig Adrenal gland tissue female embryo 108 days DNase signal 2 3042 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/492bbc90-b30b-4659-b299-c8961607b796/ENCFF438OIC.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419MZH Signal\ track wgEncodeReg4Epigenetics_ENCFF438OIC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF557DWN ENCSR461ZJT Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF501 ZNF501 ENCSR461ZJT signal 2 3042 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/58d1507b-4e69-49e0-9cc5-056af03200b5/ENCFF557DWN.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF501 ZNF501 ENCSR461ZJT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR461ZJT Signal\ track wgEncodeReg4TfChip_ENCFF557DWN\ type bigWig\ visibility full\ MelanocyteDonor1MC1_CNhs12816_ctss_rev MelanocyteD1- bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse 0 3042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor1MC1_CNhs12816_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ MelanocyteDonor1MC1_CNhs12816_tpm_rev MelanocyteD1- bigWig Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse 1 3042 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor1%20%28MC%2b1%29.CNhs12816.12641-134G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor1 (MC+1)_CNhs12816_12641-134G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12641-134G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor1MC1_CNhs12816_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12641-134G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF784JMV ENCSR419OAR Peak bigBed 5 T-cell male adult 24 years DNase peak 4 3043 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e2e66c0a-e6c3-4e84-8847-064eec397130/ENCFF784JMV.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419OAR Peak\ track wgEncodeReg4Epigenetics_ENCFF784JMV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF315AWN ENCSR462KYU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1 GABPB1 peaks 4 3043 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3c4d19c2-eaf6-4a3d-ad12-8c13bf2d201d/ENCFF315AWN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1 GABPB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR462KYU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF315AWN\ type bigBed 5\ useScore 1\ visibility squish\ MelanocyteDonor2MC2_CNhs13156_ctss_fwd MelanocyteD2+ bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward 0 3043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor2MC2_CNhs13156_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ MelanocyteDonor2MC2_CNhs13156_tpm_fwd MelanocyteD2+ bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward 1 3043 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor2MC2_CNhs13156_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF878FQR ENCSR419OAR Signal bigWig T-cell male adult 24 years DNase signal 2 3044 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/f3105994-9352-4566-99ee-a2d16ca9e618/ENCFF878FQR.bigWig\ color 6,218,147\ longLabel T-cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419OAR Signal\ track wgEncodeReg4Epigenetics_ENCFF878FQR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF384QNT ENCSR462KYU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1 GABPB1 ENCSR462KYU signal 2 3044 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/83cbfe2c-1e0f-426d-91a5-afe4dc017a35/ENCFF384QNT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1 GABPB1 ENCSR462KYU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR462KYU Signal\ track wgEncodeReg4TfChip_ENCFF384QNT\ type bigWig\ visibility full\ MelanocyteDonor2MC2_CNhs13156_ctss_rev MelanocyteD2- bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse 0 3044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor2MC2_CNhs13156_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ MelanocyteDonor2MC2_CNhs13156_tpm_rev MelanocyteD2- bigWig Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse 1 3044 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor2%20%28MC%2b2%29.CNhs13156.12739-135I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor2 (MC+2)_CNhs13156_12739-135I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12739-135I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor2MC2_CNhs13156_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12739-135I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF475KJF ENCSR419UYY Signal bigWig GM19025 ATAC signal 2 3045 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/b882c2d4-deec-49a5-84dc-84c7d45626d8/ENCFF475KJF.bigWig\ color 2,199,185\ longLabel GM19025 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR419UYY Signal\ track wgEncodeReg4Epigenetics_ENCFF475KJF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF464EIT ENCSR462QZZ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF395 ZNF395 peaks 4 3045 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/540c2b03-cae3-45b4-a82d-4bd65ea34c47/ENCFF464EIT.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF395 ZNF395 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR462QZZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF464EIT\ type bigBed 5\ useScore 1\ visibility squish\ MelanocyteDonor3MC3_CNhs13406_ctss_fwd MelanocyteD3+ bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward 0 3045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor3MC3_CNhs13406_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ MelanocyteDonor3MC3_CNhs13406_tpm_fwd MelanocyteD3+ bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward 1 3045 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MelanocyteDonor3MC3_CNhs13406_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF006DXR ENCSR420IOA Peak bigBed 5 Amnion tissue male embryo 16 weeks H3K4me3 peak 4 3046 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7fe86828-c31d-4ad1-97a1-174064234371/ENCFF006DXR.bigBed\ color 255,0,0\ longLabel Amnion tissue male embryo 16 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420IOA Peak\ track wgEncodeReg4Epigenetics_ENCFF006DXR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF056UOA ENCSR462QZZ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF395 ZNF395 ENCSR462QZZ signal 2 3046 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4bdfd61d-54d7-424c-aca5-ca8652e0b976/ENCFF056UOA.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF395 ZNF395 ENCSR462QZZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR462QZZ Signal\ track wgEncodeReg4TfChip_ENCFF056UOA\ type bigWig\ visibility full\ MelanocyteDonor3MC3_CNhs13406_ctss_rev MelanocyteD3- bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse 0 3046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MelanocyteD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor3MC3_CNhs13406_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ MelanocyteDonor3MC3_CNhs13406_tpm_rev MelanocyteD3- bigWig Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse 1 3046 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Melanocyte%2c%20donor3%20%28MC%2b3%29.CNhs13406.12837-137B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Melanocyte, donor3 (MC+3)_CNhs13406_12837-137B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12837-137B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MelanocyteD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MelanocyteDonor3MC3_CNhs13406_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12837-137B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF211RIL ENCSR420IOA Signal bigWig Amnion tissue male embryo 16 weeks H3K4me3 signal 2 3047 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/25fbd642-c3b3-40b2-943c-f43a5c491a6b/ENCFF211RIL.bigWig\ color 255,0,0\ longLabel Amnion tissue male embryo 16 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420IOA Signal\ track wgEncodeReg4Epigenetics_ENCFF211RIL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF237BMI ENCSR463DPV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4 AFF4 peaks 4 3047 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/c053094b-14fd-4f98-93eb-543e9e5d5662/ENCFF237BMI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AFF4 AFF4 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420NOA Peak\ track wgEncodeReg4Epigenetics_ENCFF152PRJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF654BFF ENCSR463XCZ Peak bigBed 5 Upper lobe of left lung tissue male adult (54 years) CTCF peaks 4 3050 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/bfe8f1c3-10c2-4133-92ff-9fa1004be8f2/ENCFF654BFF.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR463XCZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF654BFF\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor4227_121Ud_24h_CNhs13643_ctss_rev MonocyteMacrophageUdornInfluenza_24hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor4 (227_121:Ud_24h)_CNhs13643_13314-143A2_reverse 0 3050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13314-143A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aUd_24h%29.CNhs13643.13314-143A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor4 (227_121:Ud_24h)_CNhs13643_13314-143A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13314-143A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD4-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor4227_121Ud_24h_CNhs13643_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13314-143A2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor4227_121Ud_24h_CNhs13643_tpm_rev MonocyteMacrophageUdornInfluenza_24hr00minD4- bigWig Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor4 (227_121:Ud_24h)_CNhs13643_13314-143A2_reverse 1 3050 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13314-143A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20udorn%20influenza%20infection%2c%2024hr00min%2c%20donor4%20%28227_121%3aUd_24h%29.CNhs13643.13314-143A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to udorn influenza infection, 24hr00min, donor4 (227_121:Ud_24h)_CNhs13643_13314-143A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13314-143A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MonocyteMacrophageUdornInfluenza_24hr00minD4-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToUdornInfluenzaInfection24hr00minDonor4227_121Ud_24h_CNhs13643_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13314-143A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF746ODB ENCSR420NOA Signal bigWig Hematopoietic multipotent progenitor cell treated with interleukin-3 for 11 days, kit ligand for 11 days, hydrocortisone succinate for 11 days, erythropoietin for 11 days DNase signal 2 3051 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/70d6b145-3dfb-4f6f-90a8-43eb0c5deeda/ENCFF746ODB.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 11 days, kit ligand for 11 days, hydrocortisone succinate for 11 days, erythropoietin for 11 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420NOA Signal\ track wgEncodeReg4Epigenetics_ENCFF746ODB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF750ENA ENCSR463XCZ Signal bigWig Upper lobe of left lung tissue male adult (54 years) CTCF ENCSR463XCZ signal 2 3051 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/2e94ad77-faaa-433f-9b29-ab8808dc2bb1/ENCFF750ENA.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (54 years) CTCF ENCSR463XCZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR463XCZ Signal\ track wgEncodeReg4TfChip_ENCFF750ENA\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_ctss_fwd MscAdipogenicInduction_00hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_forward 0 3051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep3.CNhs13427.13237-142A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13237-142A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_tpm_fwd MscAdipogenicInduction_00hr30minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_forward 1 3051 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep3.CNhs13427.13237-142A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13237-142A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF911BRT ENCSR420RVW Peak bigBed 5 HG02870 ATAC peak 4 3052 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/545704d2-3432-4998-8a17-cf3759aff60a/ENCFF911BRT.bigBed\ color 2,199,185\ longLabel HG02870 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420RVW Peak\ track wgEncodeReg4Epigenetics_ENCFF911BRT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF748PRQ ENCSR464CSO Peak bigBed 5 Suprapubic skin tissue male adult (37 years) POLR2AphosphoS5 peaks 4 3052 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/8747015c-5211-421c-8ef4-20c6c05ce0ed/ENCFF748PRQ.bigBed\ labelFields none\ longLabel Suprapubic skin tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR464CSO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF748PRQ\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_ctss_rev MscAdipogenicInduction_00hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_reverse 0 3052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep3.CNhs13427.13237-142A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13237-142A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_tpm_rev MscAdipogenicInduction_00hr30minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_reverse 1 3052 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2000hr30min%2c%20biol_rep3.CNhs13427.13237-142A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 00hr30min, biol_rep3_CNhs13427_13237-142A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13237-142A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction00hr30minBiolRep3_CNhs13427_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13237-142A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF684SCN ENCSR420RVW Signal bigWig HG02870 ATAC signal 2 3053 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/c197ce44-7a79-4f97-bb48-c7ae271cd0d3/ENCFF684SCN.bigWig\ color 2,199,185\ longLabel HG02870 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420RVW Signal\ track wgEncodeReg4Epigenetics_ENCFF684SCN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF424MAD ENCSR464CSO Signal bigWig Suprapubic skin tissue male adult (37 years) POLR2AphosphoS5 ENCSR464CSO signal 2 3053 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/7f33a706-d6f2-4f5d-ae4b-5a60e9479f1d/ENCFF424MAD.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (37 years) POLR2AphosphoS5 ENCSR464CSO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR464CSO Signal\ track wgEncodeReg4TfChip_ENCFF424MAD\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_ctss_fwd MscAdipogenicInduction_01hr20minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_forward 0 3053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep1.CNhs13434.13244-142B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13244-142B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_tpm_fwd MscAdipogenicInduction_01hr20minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_forward 1 3053 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep1.CNhs13434.13244-142B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13244-142B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF790QKJ ENCSR420RWU Peak bigBed 5 Brain tissue male embryo 105 days DNase peak 4 3054 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/c4d4e34f-7c96-47d8-b6f0-feae11f44a49/ENCFF790QKJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420RWU Peak\ track wgEncodeReg4Epigenetics_ENCFF790QKJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF423XRG ENCSR464DKE Peak bigBed 5 Loucy CTCF peaks 4 3054 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/03/09/64e9339a-2c46-4200-884b-ecb4f3581778/ENCFF423XRG.bigBed\ labelFields none\ longLabel Loucy CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR464DKE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF423XRG\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_ctss_rev MscAdipogenicInduction_01hr20minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_reverse 0 3054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep1.CNhs13434.13244-142B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13244-142B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_tpm_rev MscAdipogenicInduction_01hr20minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_reverse 1 3054 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep1.CNhs13434.13244-142B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep1_CNhs13434_13244-142B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13244-142B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep1_CNhs13434_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13244-142B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF798GHR ENCSR420RWU Signal bigWig Brain tissue male embryo 105 days DNase signal 2 3055 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/3dd65818-ca44-48f8-b5b1-b4a19f4079a5/ENCFF798GHR.bigWig\ color 6,218,147\ longLabel Brain tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR420RWU Signal\ track wgEncodeReg4Epigenetics_ENCFF798GHR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF699SOM ENCSR464DKE Signal bigWig Loucy CTCF ENCSR464DKE signal 2 3055 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/3b62920a-4735-40da-8cd2-48177cea930d/ENCFF699SOM.bigWig\ color 254,75,173\ longLabel Loucy CTCF ENCSR464DKE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR464DKE Signal\ track wgEncodeReg4TfChip_ENCFF699SOM\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_ctss_fwd MscAdipogenicInduction_01hr20minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_forward 0 3055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep2.CNhs13598.13245-142B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13245-142B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_tpm_fwd MscAdipogenicInduction_01hr20minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_forward 1 3055 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep2.CNhs13598.13245-142B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13245-142B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF820JEG ENCSR421GEN Peak bigBed 5 Heart left ventricle tissue female adult 59 years H3K4me3 peak 4 3056 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/f0749d94-aa47-4e9d-bfa8-021d4ef130e0/ENCFF820JEG.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue female adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR421GEN Peak\ track wgEncodeReg4Epigenetics_ENCFF820JEG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF501RUF ENCSR464KFG Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF140 ZNF140 peaks 4 3056 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ea4e6477-ea23-4146-9749-7e4cd05bf833/ENCFF501RUF.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF140 ZNF140 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR464KFG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF501RUF\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_ctss_rev MscAdipogenicInduction_01hr20minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_reverse 0 3056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep2.CNhs13598.13245-142B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13245-142B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_tpm_rev MscAdipogenicInduction_01hr20minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_reverse 1 3056 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep2.CNhs13598.13245-142B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep2_CNhs13598_13245-142B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13245-142B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep2_CNhs13598_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13245-142B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF614FJF ENCSR421GEN Signal bigWig Heart left ventricle tissue female adult 59 years H3K4me3 signal 2 3057 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/f7652235-cfcf-4cae-a4b8-caff3841c264/ENCFF614FJF.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue female adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR421GEN Signal\ track wgEncodeReg4Epigenetics_ENCFF614FJF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF689AFK ENCSR464KFG Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF140 ZNF140 ENCSR464KFG signal 2 3057 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/c8258c78-c3ba-448c-a3d1-7e6c838b2b07/ENCFF689AFK.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF140 ZNF140 ENCSR464KFG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR464KFG Signal\ track wgEncodeReg4TfChip_ENCFF689AFK\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_ctss_fwd MscAdipogenicInduction_01hr20minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_forward 0 3057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep3.CNhs13599.13246-142B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13246-142B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_tpm_fwd MscAdipogenicInduction_01hr20minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_forward 1 3057 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep3.CNhs13599.13246-142B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13246-142B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF873LHX ENCSR421HUB Peak bigBed 5 Sigmoid colon tissue male adult 34 years H3K4me3 peak 4 3058 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/09f9c0a5-da70-456d-a429-b45aca9e8c09/ENCFF873LHX.bigBed\ color 255,0,0\ longLabel Sigmoid colon tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR421HUB Peak\ track wgEncodeReg4Epigenetics_ENCFF873LHX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF666RVW ENCSR465BWW Peak bigBed 5 HepG2 SRSF1 peaks 4 3058 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/dede58e7-67f8-45cc-8e90-78508aa2b4c7/ENCFF666RVW.bigBed\ labelFields none\ longLabel HepG2 SRSF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR465BWW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF666RVW\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_ctss_rev MscAdipogenicInduction_01hr20minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_reverse 0 3058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep3.CNhs13599.13246-142B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13246-142B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_tpm_rev MscAdipogenicInduction_01hr20minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_reverse 1 3058 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2001hr20min%2c%20biol_rep3.CNhs13599.13246-142B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 01hr20min, biol_rep3_CNhs13599_13246-142B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13246-142B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction01hr20minBiolRep3_CNhs13599_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13246-142B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF423YBA ENCSR421HUB Signal bigWig Sigmoid colon tissue male adult 34 years H3K4me3 signal 2 3059 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/b2c1c0a2-87ac-4f74-b694-77de986c23f8/ENCFF423YBA.bigWig\ color 255,0,0\ longLabel Sigmoid colon tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR421HUB Signal\ track wgEncodeReg4Epigenetics_ENCFF423YBA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF725FTW ENCSR465BWW Signal bigWig HepG2 SRSF1 ENCSR465BWW signal 2 3059 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/2e6bb40a-efd1-415a-b50b-94578127b0f6/ENCFF725FTW.bigWig\ color 137,152,82\ longLabel HepG2 SRSF1 ENCSR465BWW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR465BWW Signal\ track wgEncodeReg4TfChip_ENCFF725FTW\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_ctss_fwd MscAdipogenicInduction_02hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_forward 0 3059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep3.CNhs13605.13252-142C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13252-142C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_tpm_fwd MscAdipogenicInduction_02hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_forward 1 3059 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep3.CNhs13605.13252-142C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13252-142C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF837MGS ENCSR422IIZ Peak bigBed 5 Ascending aorta tissue female adult 51 years DNase peak 4 3060 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/e1c0efc1-957c-41ed-b5a7-c391fa046ee6/ENCFF837MGS.bigBed\ color 6,218,147\ labelFields none\ longLabel Ascending aorta tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422IIZ Peak\ track wgEncodeReg4Epigenetics_ENCFF837MGS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF379OSU ENCSR465XQW Peak bigBed 5 MCF-7 ZNF217 peaks 4 3060 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/dc0a3447-52e9-42ff-8358-1d6378ee3dc9/ENCFF379OSU.bigBed\ labelFields none\ longLabel MCF-7 ZNF217 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR465XQW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF379OSU\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_ctss_rev MscAdipogenicInduction_02hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_reverse 0 3060 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep3.CNhs13605.13252-142C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13252-142C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_tpm_rev MscAdipogenicInduction_02hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_reverse 1 3060 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr00min%2c%20biol_rep3.CNhs13605.13252-142C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr00min, biol_rep3_CNhs13605_13252-142C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13252-142C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr00minBiolRep3_CNhs13605_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13252-142C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF707HLC ENCSR422IIZ Signal bigWig Ascending aorta tissue female adult 51 years DNase signal 2 3061 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/bc2e15ef-9e7e-4755-85b6-26d684441859/ENCFF707HLC.bigWig\ color 6,218,147\ longLabel Ascending aorta tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422IIZ Signal\ track wgEncodeReg4Epigenetics_ENCFF707HLC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF666ESD ENCSR465XQW Signal bigWig MCF-7 ZNF217 ENCSR465XQW signal 2 3061 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/68f9d4b4-1077-4d09-9189-60e9719fe24f/ENCFF666ESD.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF217 ENCSR465XQW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR465XQW Signal\ track wgEncodeReg4TfChip_ENCFF666ESD\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_ctss_fwd MscAdipogenicInduction_02hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_forward 0 3061 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep2.CNhs13607.13254-142C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13254-142C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_tpm_fwd MscAdipogenicInduction_02hr30minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_forward 1 3061 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep2.CNhs13607.13254-142C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13254-142C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF391DRG ENCSR422JNY Peak bigBed 5 OCI-LY1 H3K4me3 peak 4 3062 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/48c62d21-fb88-467e-9514-1a6917a03da8/ENCFF391DRG.bigBed\ color 255,0,0\ longLabel OCI-LY1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422JNY Peak\ track wgEncodeReg4Epigenetics_ENCFF391DRG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF139JDN ENCSR466TNQ Peak bigBed 5 Spleen tissue female adult (61 years) CTCF peaks 4 3062 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ce9e2c06-0c45-44b7-a564-9a3211ee54e4/ENCFF139JDN.bigBed\ labelFields none\ longLabel Spleen tissue female adult (61 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR466TNQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF139JDN\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_ctss_rev MscAdipogenicInduction_02hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_reverse 0 3062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep2.CNhs13607.13254-142C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13254-142C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_tpm_rev MscAdipogenicInduction_02hr30minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_reverse 1 3062 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2002hr30min%2c%20biol_rep2.CNhs13607.13254-142C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 02hr30min, biol_rep2_CNhs13607_13254-142C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13254-142C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction02hr30minBiolRep2_CNhs13607_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13254-142C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF422ACL ENCSR422JNY Signal bigWig OCI-LY1 H3K4me3 signal 2 3063 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/3e012452-67ab-412d-bb0d-d587f482594e/ENCFF422ACL.bigWig\ color 255,0,0\ longLabel OCI-LY1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422JNY Signal\ track wgEncodeReg4Epigenetics_ENCFF422ACL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF806GMH ENCSR466TNQ Signal bigWig Spleen tissue female adult (61 years) CTCF ENCSR466TNQ signal 2 3063 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/4e685eef-bd63-4263-a7c2-5e1ecafb6ee1/ENCFF806GMH.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (61 years) CTCF ENCSR466TNQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR466TNQ Signal\ track wgEncodeReg4TfChip_ENCFF806GMH\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_ctss_fwd MscAdipogenicInduction_03hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_forward 0 3063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep2.CNhs13610.13257-142C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13257-142C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_tpm_fwd MscAdipogenicInduction_03hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_forward 1 3063 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep2.CNhs13610.13257-142C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13257-142C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF575EXE ENCSR422PVL Peak bigBed 5 Left kidney tissue female embryo 147 days DNase peak 4 3064 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/b267a927-b54d-447f-a1fe-47d2e0b3fb06/ENCFF575EXE.bigBed\ color 6,218,147\ labelFields none\ longLabel Left kidney tissue female embryo 147 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422PVL Peak\ track wgEncodeReg4Epigenetics_ENCFF575EXE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF483FIW ENCSR466VYP Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF266 ZNF266 peaks 4 3064 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/b06fdf5b-d152-43ce-90d3-2edf8a5c9dfd/ENCFF483FIW.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF266 ZNF266 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR466VYP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF483FIW\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_ctss_rev MscAdipogenicInduction_03hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_reverse 0 3064 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep2.CNhs13610.13257-142C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13257-142C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_tpm_rev MscAdipogenicInduction_03hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_reverse 1 3064 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2003hr00min%2c%20biol_rep2.CNhs13610.13257-142C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 03hr00min, biol_rep2_CNhs13610_13257-142C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13257-142C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction03hr00minBiolRep2_CNhs13610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13257-142C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF799IDS ENCSR422PVL Signal bigWig Left kidney tissue female embryo 147 days DNase signal 2 3065 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/611fe48a-6fb7-4834-934d-023d7ab1d89c/ENCFF799IDS.bigWig\ color 6,218,147\ longLabel Left kidney tissue female embryo 147 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422PVL Signal\ track wgEncodeReg4Epigenetics_ENCFF799IDS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF769JVM ENCSR466VYP Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF266 ZNF266 ENCSR466VYP signal 2 3065 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/20e6b261-76de-4ed7-bbd6-91c13b329034/ENCFF769JVM.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF266 ZNF266 ENCSR466VYP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR466VYP Signal\ track wgEncodeReg4TfChip_ENCFF769JVM\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_ctss_fwd MscAdipogenicInduction_12hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_forward 0 3065 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep1.CNhs13612.13259-142D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13259-142D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_tpm_fwd MscAdipogenicInduction_12hr00minBr1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_forward 1 3065 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep1.CNhs13612.13259-142D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13259-142D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF963RXJ ENCSR422RPD Peak bigBed 5 GM21717 ATAC peak 4 3066 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/ffcc6947-66ce-4dab-ad94-550a1741a15c/ENCFF963RXJ.bigBed\ color 2,199,185\ longLabel GM21717 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422RPD Peak\ track wgEncodeReg4Epigenetics_ENCFF963RXJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF067KUH ENCSR467EQP Peak bigBed 5 Brain organoid female embryo (5 days): 90 days post differentiation CTCF peaks 4 3066 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/356f46cf-d89b-4d90-91ae-4f6efd66c52f/ENCFF067KUH.bigBed\ labelFields none\ longLabel Brain organoid female embryo (5 days): 90 days post differentiation CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR467EQP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF067KUH\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_ctss_rev MscAdipogenicInduction_12hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_reverse 0 3066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep1.CNhs13612.13259-142D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13259-142D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_tpm_rev MscAdipogenicInduction_12hr00minBr1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_reverse 1 3066 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep1.CNhs13612.13259-142D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep1_CNhs13612_13259-142D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13259-142D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep1_CNhs13612_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13259-142D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF146GHP ENCSR422RPD Signal bigWig GM21717 ATAC signal 2 3067 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/a3862922-667e-4ccb-95c8-8fd37440c595/ENCFF146GHP.bigWig\ color 2,199,185\ longLabel GM21717 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422RPD Signal\ track wgEncodeReg4Epigenetics_ENCFF146GHP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF485XTX ENCSR467EQP Signal bigWig Brain organoid female embryo (5 days): 90 days post differentiation CTCF ENCSR467EQP signal 2 3067 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/19a794d8-50b1-486b-92d7-763db2b448ee/ENCFF485XTX.bigWig\ color 155,155,18\ longLabel Brain organoid female embryo (5 days): 90 days post differentiation CTCF ENCSR467EQP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR467EQP Signal\ track wgEncodeReg4TfChip_ENCFF485XTX\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_ctss_fwd MscAdipogenicInduction_12hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_forward 0 3067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep2.CNhs13613.13260-142D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13260-142D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_tpm_fwd MscAdipogenicInduction_12hr00minBr2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_forward 1 3067 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep2.CNhs13613.13260-142D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13260-142D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF502RTI ENCSR422SUG Peak bigBed 5 MCF-7 ATAC peak 4 3068 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/37a3438e-da3c-4a77-8722-d286cf1f17f0/ENCFF502RTI.bigBed\ color 2,199,185\ longLabel MCF-7 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422SUG Peak\ track wgEncodeReg4Epigenetics_ENCFF502RTI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF733RBE ENCSR468IJT Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP7 SP7 peaks 4 3068 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/01/20950169-0b02-4293-8889-34bfb74b0be1/ENCFF733RBE.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP7 SP7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR468IJT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF733RBE\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_ctss_rev MscAdipogenicInduction_12hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_reverse 0 3068 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep2.CNhs13613.13260-142D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13260-142D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_tpm_rev MscAdipogenicInduction_12hr00minBr2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_reverse 1 3068 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep2.CNhs13613.13260-142D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep2_CNhs13613_13260-142D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13260-142D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep2_CNhs13613_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13260-142D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF782BVX ENCSR422SUG Signal bigWig MCF-7 ATAC signal 2 3069 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/049dbe11-c1a4-4196-92d6-7390c6b91f0c/ENCFF782BVX.bigWig\ color 2,199,185\ longLabel MCF-7 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR422SUG Signal\ track wgEncodeReg4Epigenetics_ENCFF782BVX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF313RMD ENCSR468IJT Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP7 SP7 ENCSR468IJT signal 2 3069 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/01/88d45009-6af6-4de3-9049-972b4fe6b769/ENCFF313RMD.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP7 SP7 ENCSR468IJT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR468IJT Signal\ track wgEncodeReg4TfChip_ENCFF313RMD\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_ctss_fwd MscAdipogenicInduction_12hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_forward 0 3069 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep3.CNhs13614.13261-142D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13261-142D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_tpm_fwd MscAdipogenicInduction_12hr00minBr3+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_forward 1 3069 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep3.CNhs13614.13261-142D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13261-142D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF061PEF ENCSR423AKG Peak bigBed 5 Foreskin melanocyte male newborn H3K4me3 peak 4 3070 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/51d51761-9152-441d-ac34-6d116074a601/ENCFF061PEF.bigBed\ color 255,0,0\ longLabel Foreskin melanocyte male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR423AKG Peak\ track wgEncodeReg4Epigenetics_ENCFF061PEF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF437VFY ENCSR468LUO Peak bigBed 5 MCF-7 SIN3A peaks 4 3070 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/e20acbde-1284-4f13-836b-5304bf23f186/ENCFF437VFY.bigBed\ labelFields none\ longLabel MCF-7 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR468LUO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF437VFY\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_ctss_rev MscAdipogenicInduction_12hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse 0 3070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep3.CNhs13614.13261-142D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13261-142D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_tpm_rev MscAdipogenicInduction_12hr00minBr3- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse 1 3070 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%2012hr00min%2c%20biol_rep3.CNhs13614.13261-142D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, 12hr00min, biol_rep3_CNhs13614_13261-142D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13261-142D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_12hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInduction12hr00minBiolRep3_CNhs13614_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13261-142D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF846SFT ENCSR423AKG Signal bigWig Foreskin melanocyte male newborn H3K4me3 signal 2 3071 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/db214f72-4672-4668-b368-b8d75a8c8272/ENCFF846SFT.bigWig\ color 255,0,0\ longLabel Foreskin melanocyte male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR423AKG Signal\ track wgEncodeReg4Epigenetics_ENCFF846SFT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF885EYZ ENCSR468LUO Signal bigWig MCF-7 SIN3A ENCSR468LUO signal 2 3071 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/53dfa48d-01cf-43da-8804-72e8cfbabb5b/ENCFF885EYZ.bigWig\ color 65,171,173\ longLabel MCF-7 SIN3A ENCSR468LUO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR468LUO Signal\ track wgEncodeReg4TfChip_ENCFF885EYZ\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_fwd MscAdipogenicInduction_Day01Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward 0 3071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_fwd MscAdipogenicInduction_Day01Br1+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward 1 3071 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF099ASU ENCSR423MQG Peak bigBed 5 Brain organoid male adult 53 years CTCF peak 4 3072 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/18/5532f395-bc7c-478f-9720-2137b7b4b813/ENCFF099ASU.bigBed\ color 0,176,240\ labelFields none\ longLabel Brain organoid male adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR423MQG Peak\ track wgEncodeReg4Epigenetics_ENCFF099ASU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF146SSF ENCSR469FBY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF4A HNF4A peaks 4 3072 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/2f1958c3-88c9-4507-b181-898a44aa0074/ENCFF146SSF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF4A HNF4A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469FBY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF146SSF\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_rev MscAdipogenicInduction_Day01Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse 0 3072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_rev MscAdipogenicInduction_Day01Br1- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse 1 3072 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day01%2c%20biol_rep1.CNhs13615.13262-142D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day01, biol_rep1_CNhs13615_13262-142D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13262-142D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day01Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay01BiolRep1_CNhs13615_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13262-142D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF065GAN ENCSR423MQG Signal bigWig Brain organoid male adult 53 years CTCF signal 2 3073 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/18/bc6dd2c9-06b1-4233-a4d2-e547bc4d3f97/ENCFF065GAN.bigWig\ color 0,176,240\ longLabel Brain organoid male adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR423MQG Signal\ track wgEncodeReg4Epigenetics_ENCFF065GAN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF741YLQ ENCSR469FBY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF4A HNF4A ENCSR469FBY signal 2 3073 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/ce1917f6-84b4-49b8-a712-f91ae5d7fec8/ENCFF741YLQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF4A HNF4A ENCSR469FBY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469FBY Signal\ track wgEncodeReg4TfChip_ENCFF741YLQ\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_fwd MscAdipogenicInduction_Day04Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward 0 3073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_fwd MscAdipogenicInduction_Day04Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward 1 3073 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF595WAL ENCSR423ZUM Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 3074 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/53ff29e5-777a-4fc9-b10e-86dc8e4b6aa2/ENCFF595WAL.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR423ZUM Peak\ track wgEncodeReg4Epigenetics_ENCFF595WAL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF499KCU ENCSR469GZL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR LCOR peaks 4 3074 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/85dcec73-fa7b-4b50-8bf7-26d0a486b3ce/ENCFF499KCU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR LCOR peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469GZL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF499KCU\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_rev MscAdipogenicInduction_Day04Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse 0 3074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_rev MscAdipogenicInduction_Day04Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse 1 3074 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day04%2c%20biol_rep2.CNhs13623.13269-142E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day04, biol_rep2_CNhs13623_13269-142E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13269-142E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay04BiolRep2_CNhs13623_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13269-142E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF111MOL ENCSR423ZUM Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 3075 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/84e9fa21-2ed7-4ce9-8a23-9406f2f519f7/ENCFF111MOL.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR423ZUM Signal\ track wgEncodeReg4Epigenetics_ENCFF111MOL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF267ZWK ENCSR469GZL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR LCOR ENCSR469GZL signal 2 3075 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/92def56f-6087-44b7-b09d-114ff3d8ca00/ENCFF267ZWK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCOR LCOR ENCSR469GZL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469GZL Signal\ track wgEncodeReg4TfChip_ENCFF267ZWK\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_fwd MscAdipogenicInduction_Day14Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward 0 3075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_fwd MscAdipogenicInduction_Day14Br2+ bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward 1 3075 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF032TDV ENCSR424IJM Peak bigBed 5 Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 3076 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/134f802b-948d-45c1-a113-fec20107fd08/ENCFF032TDV.bigBed\ color 181,145,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR424IJM Peak\ track wgEncodeReg4Epigenetics_ENCFF032TDV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF477JAK ENCSR469POZ Peak bigBed 5 Tibial nerve tissue female adult (53 years) CTCF peaks 4 3076 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/6f46c393-603b-4c23-b54f-5bd4734ef751/ENCFF477JAK.bigBed\ labelFields none\ longLabel Tibial nerve tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469POZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF477JAK\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_rev MscAdipogenicInduction_Day14Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse 0 3076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MscAdipogenicInduction_Day14Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_rev MscAdipogenicInduction_Day14Br2- bigWig mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse 1 3076 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20adipogenic%20induction%2c%20day14%2c%20biol_rep2.CNhs13631.13278-142F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), adipogenic induction, day14, biol_rep2_CNhs13631_13278-142F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13278-142F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MscAdipogenicInduction_Day14Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedAdipogenicInductionDay14BiolRep2_CNhs13631_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13278-142F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF046NYM ENCSR424IJM Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 3077 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/75389f10-4562-4bf7-a30f-68dfb4a85f93/ENCFF046NYM.bigWig\ color 181,145,0\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR424IJM Signal\ track wgEncodeReg4Epigenetics_ENCFF046NYM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF960DIA ENCSR469POZ Signal bigWig Tibial nerve tissue female adult (53 years) CTCF ENCSR469POZ signal 2 3077 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/840af3e6-e02b-42fd-ae12-695d37d12f53/ENCFF960DIA.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (53 years) CTCF ENCSR469POZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469POZ Signal\ track wgEncodeReg4TfChip_ENCFF960DIA\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward 0 3077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_fwd MyoblastToMyotubes_Day01D2+ bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward 1 3077 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF426IWO ENCSR424KQH Peak bigBed 5 GM21447 ATAC peak 4 3078 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/b883d4f6-6962-42a8-a89b-9824985dd43d/ENCFF426IWO.bigBed\ color 2,199,185\ longLabel GM21447 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR424KQH Peak\ track wgEncodeReg4Epigenetics_ENCFF426IWO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF249AMT ENCSR469WII Peak bigBed 5 GM12878 BMI1 peaks 4 3078 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/2b6c7272-55ce-4159-bbc6-546a80fb7bf8/ENCFF249AMT.bigBed\ labelFields none\ longLabel GM12878 BMI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469WII Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF249AMT\ type bigBed 5\ useScore 1\ visibility squish\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse 0 3078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_rev MyoblastToMyotubes_Day01D2- bigWig Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse 1 3078 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day01%2c%20control%20donor2.CNhs14568.13479-145A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day01, control donor2_CNhs14568_13479-145A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13479-145A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day01D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay01ControlDonor2_CNhs14568_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13479-145A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF616HTW ENCSR424KQH Signal bigWig GM21447 ATAC signal 2 3079 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/f4a5cc70-4080-4e16-b2b0-48e8d5be2d2e/ENCFF616HTW.bigWig\ color 2,199,185\ longLabel GM21447 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR424KQH Signal\ track wgEncodeReg4Epigenetics_ENCFF616HTW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF128CNB ENCSR469WII Signal bigWig GM12878 BMI1 ENCSR469WII signal 2 3079 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/32e646e5-3215-4197-8d44-629331e2aa43/ENCFF128CNB.bigWig\ color 254,75,173\ longLabel GM12878 BMI1 ENCSR469WII signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR469WII Signal\ track wgEncodeReg4TfChip_ENCFF128CNB\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward 0 3079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_fwd MyoblastToMyotubes_Day06D2+ bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward 1 3079 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF028MQN ENCSR424MWH Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-21 for 1 hour DNase peak 4 3080 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/53ad9630-b443-4f91-837c-c400e730d801/ENCFF028MQN.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-21 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR424MWH Peak\ track wgEncodeReg4Epigenetics_ENCFF028MQN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF133ETH ENCSR471VAY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF484 ZNF484 peaks 4 3080 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/7e610665-80db-4ed9-93aa-3a7545833fa2/ENCFF133ETH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF484 ZNF484 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR471VAY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF133ETH\ type bigBed 5\ useScore 1\ visibility squish\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse 0 3080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_rev MyoblastToMyotubes_Day06D2- bigWig Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse 1 3080 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day06%2c%20Duchenne%20Muscular%20Dystrophy%20donor2.CNhs14601.13510-145D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day06, Duchenne Muscular Dystrophy donor2_CNhs14601_13510-145D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13510-145D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day06D2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay06DuchenneMuscularDystrophyDonor2_CNhs14601_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13510-145D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF909CMG ENCSR424MWH Signal bigWig CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-21 for 1 hour DNase signal 2 3081 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/6bf9185d-995d-423a-ac96-a3870c84efb3/ENCFF909CMG.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-21 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR424MWH Signal\ track wgEncodeReg4Epigenetics_ENCFF909CMG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF103LVM ENCSR471VAY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF484 ZNF484 ENCSR471VAY signal 2 3081 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/c7545dcc-7f38-41c2-8c71-6ca856f11e80/ENCFF103LVM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF484 ZNF484 ENCSR471VAY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR471VAY Signal\ track wgEncodeReg4TfChip_ENCFF103LVM\ type bigWig\ visibility full\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward 0 3081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_fwd MyoblastToMyotubes_Day10D3+ bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward 1 3081 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF309IDY ENCSR425FUS Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak 4 3082 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/07c48c83-1adc-4897-90d3-9c74ad3ae621/ENCFF309IDY.bigBed\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425FUS Peak\ track wgEncodeReg4Epigenetics_ENCFF309IDY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF543ARF ENCSR472VBD Peak bigBed 5 Sigmoid colon tissue male adult (54 years) POLR2A peaks 4 3082 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/cce44814-e506-4f51-809e-0e059dda5e7e/ENCFF543ARF.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR472VBD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF543ARF\ type bigBed 5\ useScore 1\ visibility squish\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse 0 3082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_rev MyoblastToMyotubes_Day10D3- bigWig Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse 1 3082 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Myoblast%20differentiation%20to%20myotubes%2c%20day10%2c%20control%20donor3.CNhs14584.13494-145C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Myoblast differentiation to myotubes, day10, control donor3_CNhs14584_13494-145C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13494-145C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MyoblastToMyotubes_Day10D3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MyoblastDifferentiationToMyotubesDay10ControlDonor3_CNhs14584_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13494-145C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF638FPK ENCSR425FUS Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal 2 3083 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/f9defdde-53a7-4be9-9fab-acc04d6bd49e/ENCFF638FPK.bigWig\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425FUS Signal\ track wgEncodeReg4Epigenetics_ENCFF638FPK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF672NUF ENCSR472VBD Signal bigWig Sigmoid colon tissue male adult (54 years) POLR2A ENCSR472VBD signal 2 3083 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/306d6808-19fc-4c57-9586-04bb2fcd2eb5/ENCFF672NUF.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (54 years) POLR2A ENCSR472VBD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR472VBD Signal\ track wgEncodeReg4TfChip_ENCFF672NUF\ type bigWig\ visibility full\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_fwd Tc:ARPE-19Emt_06hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward 0 3083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_fwd Tc:ARPE-19Emt_06hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward 1 3083 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF348NMA ENCSR425MRQ Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 37 years treated with 7.5 μg/kg G-CSF for 4 days DNase peak 4 3084 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/708bc636-96c0-4c97-aa85-51f2f305e512/ENCFF348NMA.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell male adult 37 years treated with 7.5 μg/kg G-CSF for 4 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425MRQ Peak\ track wgEncodeReg4Epigenetics_ENCFF348NMA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF163IJK ENCSR473DVS Peak bigBed 5 Heart right ventricle tissue male adult (40 years) CTCF peaks 4 3084 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/9d189f9a-32de-424e-b9ba-b4b0fe051102/ENCFF163IJK.bigBed\ labelFields none\ longLabel Heart right ventricle tissue male adult (40 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR473DVS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF163IJK\ type bigBed 5\ useScore 1\ visibility squish\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_rev Tc:ARPE-19Emt_06hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse 0 3084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_rev Tc:ARPE-19Emt_06hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse 1 3084 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2006hr00min%2c%20biol_rep2.CNhs14520.13665-147D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2_CNhs14520_13665-147D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13665-147D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_06hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha06hr00minBiolRep2_CNhs14520_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13665-147D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF427BWF ENCSR425MRQ Signal bigWig CD4-positive, alpha-beta T cell male adult 37 years treated with 7.5 μg/kg G-CSF for 4 days DNase signal 2 3085 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e3caa2a5-290b-49b0-b85a-a2b66c78647f/ENCFF427BWF.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell male adult 37 years treated with 7.5 μg/kg G-CSF for 4 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425MRQ Signal\ track wgEncodeReg4Epigenetics_ENCFF427BWF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF170TDI ENCSR473DVS Signal bigWig Heart right ventricle tissue male adult (40 years) CTCF ENCSR473DVS signal 2 3085 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4db82e7d-ccd9-4f07-99f5-059323ea3ab8/ENCFF170TDI.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (40 years) CTCF ENCSR473DVS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR473DVS Signal\ track wgEncodeReg4TfChip_ENCFF170TDI\ type bigWig\ visibility full\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_fwd Tc:ARPE-19Emt_24hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward 0 3085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_fwd Tc:ARPE-19Emt_24hr00minBr2+ bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward 1 3085 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF835LMF ENCSR425NQT Peak bigBed 5 Adrenal gland tissue female adult 30 years H3K4me3 peak 4 3086 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8d0a892a-e7f1-44c5-8526-150a5043f1f3/ENCFF835LMF.bigBed\ color 255,0,0\ longLabel Adrenal gland tissue female adult 30 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425NQT Peak\ track wgEncodeReg4Epigenetics_ENCFF835LMF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF977FTJ ENCSR473SUA Peak bigBed 5 A549 ESRRA peaks 4 3086 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/7001115d-6b73-42da-9481-202e3ab5df75/ENCFF977FTJ.bigBed\ labelFields none\ longLabel A549 ESRRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR473SUA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF977FTJ\ type bigBed 5\ useScore 1\ visibility squish\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_rev Tc:ARPE-19Emt_24hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse 0 3086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_rev Tc:ARPE-19Emt_24hr00minBr2- bigWig ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse 1 3086 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ARPE-19%20EMT%20induced%20with%20TGF-beta%20and%20TNF-alpha%2c%2024hr00min%2c%20biol_rep2.CNhs14536.13680-147E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ARPE-19 EMT induced with TGF-beta and TNF-alpha, 24hr00min, biol_rep2_CNhs14536_13680-147E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13680-147E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:ARPE-19Emt_24hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track ARPE19EMTInducedWithTGFbetaAndTNFalpha24hr00minBiolRep2_CNhs14536_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13680-147E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF623WKE ENCSR425NQT Signal bigWig Adrenal gland tissue female adult 30 years H3K4me3 signal 2 3087 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/1c0e25ca-e94d-4abc-896d-37ed15aea64e/ENCFF623WKE.bigWig\ color 255,0,0\ longLabel Adrenal gland tissue female adult 30 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425NQT Signal\ track wgEncodeReg4Epigenetics_ENCFF623WKE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF567QFD ENCSR473SUA Signal bigWig A549 ESRRA ENCSR473SUA signal 2 3087 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/5efa6303-9b9d-45d0-a67d-37fae7077467/ENCFF567QFD.bigWig\ color 130,163,45\ longLabel A549 ESRRA ENCSR473SUA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR473SUA Signal\ track wgEncodeReg4TfChip_ENCFF567QFD\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_ctss_fwd Tc:H1ToHsc_Day00Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward 0 3087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep1.CNhs14067.13523-145F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13523-145F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day00Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_tpm_fwd Tc:H1ToHsc_Day00Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward 1 3087 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep1.CNhs14067.13523-145F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13523-145F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day00Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF719DFT ENCSR425PQI Peak bigBed 5 Trophoblast cell originated from H1 H3K27ac peak 4 3088 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/132e7a48-b2c6-42d7-9c9f-9d6c7fec2360/ENCFF719DFT.bigBed\ color 181,145,0\ longLabel Trophoblast cell originated from H1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425PQI Peak\ track wgEncodeReg4Epigenetics_ENCFF719DFT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF429WPG ENCSR474CVP Peak bigBed 5 K562 TRIM28 peaks 4 3088 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c368ae7c-ea9e-4255-978c-6118eab82d03/ENCFF429WPG.bigBed\ labelFields none\ longLabel K562 TRIM28 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR474CVP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF429WPG\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_ctss_rev Tc:H1ToHsc_Day00Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_reverse 0 3088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep1.CNhs14067.13523-145F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13523-145F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day00Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_tpm_rev Tc:H1ToHsc_Day00Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_reverse 1 3088 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep1.CNhs14067.13523-145F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep1_CNhs14067_13523-145F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13523-145F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day00Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep1_CNhs14067_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13523-145F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF004BGC ENCSR425PQI Signal bigWig Trophoblast cell originated from H1 H3K27ac signal 2 3089 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/bdbcf6bc-b2e1-48cf-8f2b-359523a1f1d7/ENCFF004BGC.bigWig\ color 181,145,0\ longLabel Trophoblast cell originated from H1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425PQI Signal\ track wgEncodeReg4Epigenetics_ENCFF004BGC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF436LBX ENCSR474CVP Signal bigWig K562 TRIM28 ENCSR474CVP signal 2 3089 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/2a060f35-acb5-4636-b378-2a7c8faff2cf/ENCFF436LBX.bigWig\ color 254,75,173\ longLabel K562 TRIM28 ENCSR474CVP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR474CVP Signal\ track wgEncodeReg4TfChip_ENCFF436LBX\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_ctss_fwd Tc:H1ToHsc_Day00Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_forward 0 3089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep2.CNhs14068.13524-145F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13524-145F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day00Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_tpm_fwd Tc:H1ToHsc_Day00Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_forward 1 3089 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep2.CNhs14068.13524-145F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13524-145F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day00Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF998XYN ENCSR425WQW Signal bigWig GM19324 ATAC signal 2 3090 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/45c930a8-a1b1-4989-b959-2460b2fe5b32/ENCFF998XYN.bigWig\ color 2,199,185\ longLabel GM19324 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR425WQW Signal\ track wgEncodeReg4Epigenetics_ENCFF998XYN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF868MXA ENCSR474KBG Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 μM all-trans-retinoic acid for 48 hours CSDC2 peaks 4 3090 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/689577a4-0ae2-48bd-ad44-5e5e0ac0e5f7/ENCFF868MXA.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 μM all-trans-retinoic acid for 48 hours CSDC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR474KBG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF868MXA\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_ctss_rev Tc:H1ToHsc_Day00Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_reverse 0 3090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep2.CNhs14068.13524-145F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13524-145F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day00Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_tpm_rev Tc:H1ToHsc_Day00Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_reverse 1 3090 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep2.CNhs14068.13524-145F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep2_CNhs14068_13524-145F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13524-145F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day00Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep2_CNhs14068_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13524-145F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF963IKO ENCSR426IEA Peak bigBed 5 KBM-7 DNase peak 4 3091 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/047f40a1-43f4-4c6f-a69b-2a1beddf3687/ENCFF963IKO.bigBed\ color 6,218,147\ labelFields none\ longLabel KBM-7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR426IEA Peak\ track wgEncodeReg4Epigenetics_ENCFF963IKO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF122TYB ENCSR474KBG Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 μM all-trans-retinoic acid for 48 hours CSDC2 ENCSR474KBG signal 2 3091 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/bd548666-1c0b-499f-bb97-7d4e413adab1/ENCFF122TYB.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 μM all-trans-retinoic acid for 48 hours CSDC2 ENCSR474KBG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR474KBG Signal\ track wgEncodeReg4TfChip_ENCFF122TYB\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_ctss_fwd Tc:H1ToHsc_Day00Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_forward 0 3091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep3.CNhs13964.13525-145F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13525-145F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day00Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_tpm_fwd Tc:H1ToHsc_Day00Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_forward 1 3091 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep3.CNhs13964.13525-145F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13525-145F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day00Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF331PBR ENCSR426IEA Signal bigWig KBM-7 DNase signal 2 3092 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/7ad3978f-8be2-4430-9868-719e49635586/ENCFF331PBR.bigWig\ color 6,218,147\ longLabel KBM-7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR426IEA Signal\ track wgEncodeReg4Epigenetics_ENCFF331PBR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF340OIC ENCSR474YDA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4 YEATS4 peaks 4 3092 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/a9b56092-6c98-43c0-a412-98d7c46b93d9/ENCFF340OIC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4 YEATS4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR474YDA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF340OIC\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_ctss_rev Tc:H1ToHsc_Day00Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_reverse 0 3092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep3.CNhs13964.13525-145F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13525-145F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day00Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_tpm_rev Tc:H1ToHsc_Day00Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_reverse 1 3092 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day00%2c%20biol_rep3.CNhs13964.13525-145F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day00, biol_rep3_CNhs13964_13525-145F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13525-145F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day00Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay00BiolRep3_CNhs13964_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13525-145F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF676RAT ENCSR426KLJ Signal bigWig Cognitive impairment, Alzheimer's disease middle frontal area 46 tissue female adult 87 years DNase signal 2 3093 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/1b712e5c-d504-4ed4-a6cb-afb3a5b8ae22/ENCFF676RAT.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease middle frontal area 46 tissue female adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR426KLJ Signal\ track wgEncodeReg4Epigenetics_ENCFF676RAT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF574HNA ENCSR474YDA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4 YEATS4 ENCSR474YDA signal 2 3093 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/a89f4e48-3689-463d-a020-34b788d9c748/ENCFF574HNA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4 YEATS4 ENCSR474YDA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR474YDA Signal\ track wgEncodeReg4TfChip_ENCFF574HNA\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_ctss_fwd Tc:H1ToHsc_Day03Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_forward 0 3093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep1.CNhs13965.13526-145F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13526-145F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day03Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_tpm_fwd Tc:H1ToHsc_Day03Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_forward 1 3093 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep1.CNhs13965.13526-145F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13526-145F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day03Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF768HQU ENCSR426TPQ Peak bigBed 5 Psoas muscle tissue male child 3 years DNase peak 4 3094 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/2c943644-9ddf-4d6c-a12f-461a44fe4c94/ENCFF768HQU.bigBed\ color 6,218,147\ labelFields none\ longLabel Psoas muscle tissue male child 3 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR426TPQ Peak\ track wgEncodeReg4Epigenetics_ENCFF768HQU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF366KVK ENCSR475SOC Peak bigBed 5 MCF-7 stably expressing ELF1 ELF1 peaks 4 3094 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/bf5d050c-242a-429f-ab57-d6de347e5a9c/ENCFF366KVK.bigBed\ labelFields none\ longLabel MCF-7 stably expressing ELF1 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR475SOC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF366KVK\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_ctss_rev Tc:H1ToHsc_Day03Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_reverse 0 3094 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep1.CNhs13965.13526-145F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13526-145F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day03Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_tpm_rev Tc:H1ToHsc_Day03Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_reverse 1 3094 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep1.CNhs13965.13526-145F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep1_CNhs13965_13526-145F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13526-145F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day03Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep1_CNhs13965_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13526-145F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF172AJV ENCSR426TPQ Signal bigWig Psoas muscle tissue male child 3 years DNase signal 2 3095 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/2f199fba-f22a-4264-9e2e-7ea8b6d9a683/ENCFF172AJV.bigWig\ color 6,218,147\ longLabel Psoas muscle tissue male child 3 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR426TPQ Signal\ track wgEncodeReg4Epigenetics_ENCFF172AJV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF297LPJ ENCSR475SOC Signal bigWig MCF-7 stably expressing ELF1 ELF1 ENCSR475SOC signal 2 3095 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/634b7906-a9de-46a6-a14f-dcfeb7ded140/ENCFF297LPJ.bigWig\ color 65,171,173\ longLabel MCF-7 stably expressing ELF1 ELF1 ENCSR475SOC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR475SOC Signal\ track wgEncodeReg4TfChip_ENCFF297LPJ\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_ctss_fwd Tc:H1ToHsc_Day03Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_forward 0 3095 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep2.CNhs13966.13527-145F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13527-145F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day03Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_tpm_fwd Tc:H1ToHsc_Day03Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_forward 1 3095 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep2.CNhs13966.13527-145F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13527-145F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day03Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF778XSL ENCSR426VHO Peak bigBed 5 Spleen tissue male adult 37 years H3K27ac peak 4 3096 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/c5283bb6-33a5-41eb-9da0-ba5d40b0b803/ENCFF778XSL.bigBed\ color 181,145,0\ longLabel Spleen tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR426VHO Peak\ track wgEncodeReg4Epigenetics_ENCFF778XSL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF937QHI ENCSR477OJI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF423 ZNF423 peaks 4 3096 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/8adef7ac-e005-41dd-84c5-a912bb2d8599/ENCFF937QHI.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF423 ZNF423 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR477OJI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF937QHI\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_ctss_rev Tc:H1ToHsc_Day03Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_reverse 0 3096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep2.CNhs13966.13527-145F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13527-145F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day03Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_tpm_rev Tc:H1ToHsc_Day03Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_reverse 1 3096 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep2.CNhs13966.13527-145F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep2_CNhs13966_13527-145F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13527-145F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day03Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep2_CNhs13966_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13527-145F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF837LGD ENCSR426VHO Signal bigWig Spleen tissue male adult 37 years H3K27ac signal 2 3097 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f46d0667-48a3-42c9-868f-976520c15c87/ENCFF837LGD.bigWig\ color 181,145,0\ longLabel Spleen tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR426VHO Signal\ track wgEncodeReg4Epigenetics_ENCFF837LGD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF933BIF ENCSR477OJI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF423 ZNF423 ENCSR477OJI signal 2 3097 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/1d544e28-1829-4540-87fa-01e13d2c1073/ENCFF933BIF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF423 ZNF423 ENCSR477OJI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR477OJI Signal\ track wgEncodeReg4TfChip_ENCFF933BIF\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_ctss_fwd Tc:H1ToHsc_Day03Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_forward 0 3097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep3.CNhs13968.13528-145F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13528-145F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day03Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_tpm_fwd Tc:H1ToHsc_Day03Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_forward 1 3097 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep3.CNhs13968.13528-145F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13528-145F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day03Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF410RHW ENCSR428BKN Peak bigBed 5 Gastrocnemius medialis tissue female adult 53 years CTCF peak 4 3098 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/81d1ec81-fef2-4adc-ba03-26e3355ed89c/ENCFF410RHW.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR428BKN Peak\ track wgEncodeReg4Epigenetics_ENCFF410RHW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF828GZH ENCSR479PRL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4 ZBTB4 peaks 4 3098 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/75da1376-59cc-4e8b-944d-307b4ed0d3c9/ENCFF828GZH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4 ZBTB4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR479PRL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF828GZH\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_ctss_rev Tc:H1ToHsc_Day03Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse 0 3098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep3.CNhs13968.13528-145F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13528-145F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_tpm_rev Tc:H1ToHsc_Day03Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse 1 3098 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day03%2c%20biol_rep3.CNhs13968.13528-145F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day03, biol_rep3_CNhs13968_13528-145F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13528-145F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay03BiolRep3_CNhs13968_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13528-145F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF055HAN ENCSR428BKN Signal bigWig Gastrocnemius medialis tissue female adult 53 years CTCF signal 2 3099 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a23e07cf-2b40-40b5-a19f-9597f06d3383/ENCFF055HAN.bigWig\ color 0,176,240\ longLabel Gastrocnemius medialis tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR428BKN Signal\ track wgEncodeReg4Epigenetics_ENCFF055HAN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF228QGU ENCSR479PRL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4 ZBTB4 ENCSR479PRL signal 2 3099 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/33f11ed6-4ddc-4705-b84b-c686245c68a0/ENCFF228QGU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB4 ZBTB4 ENCSR479PRL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR479PRL Signal\ track wgEncodeReg4TfChip_ENCFF228QGU\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_fwd Tc:H1ToHsc_Day09Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward 0 3099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_fwd Tc:H1ToHsc_Day09Br1+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward 1 3099 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF856YZS ENCSR428XAX Peak bigBed 5 Ovary tissue female embryo DNase peak 4 3100 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/f922304a-56c4-4c1d-94af-f409a25a1cbf/ENCFF856YZS.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR428XAX Peak\ track wgEncodeReg4Epigenetics_ENCFF856YZS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF349HFU ENCSR479RZV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB CBFB peaks 4 3100 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/b55c845c-a202-4d2b-a3eb-cc216f205a2c/ENCFF349HFU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB CBFB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR479RZV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF349HFU\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_rev Tc:H1ToHsc_Day09Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse 0 3100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_rev Tc:H1ToHsc_Day09Br1- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse 1 3100 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep1.CNhs13969.13529-145G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep1_CNhs13969_13529-145G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13529-145G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep1_CNhs13969_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13529-145G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF519ESI ENCSR428XAX Signal bigWig Ovary tissue female embryo DNase signal 2 3101 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/2844abae-acc5-45cf-8639-8c96f5ff6e10/ENCFF519ESI.bigWig\ color 6,218,147\ longLabel Ovary tissue female embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR428XAX Signal\ track wgEncodeReg4Epigenetics_ENCFF519ESI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF332JEM ENCSR479RZV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB CBFB ENCSR479RZV signal 2 3101 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/27b3a9ab-f299-4246-8635-de0b0bf6b7d3/ENCFF332JEM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB CBFB ENCSR479RZV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR479RZV Signal\ track wgEncodeReg4TfChip_ENCFF332JEM\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_fwd Tc:H1ToHsc_Day09Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward 0 3101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_fwd Tc:H1ToHsc_Day09Br2+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward 1 3101 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF973OZS ENCSR428ZCP Signal bigWig Cognitive impairment, Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal 2 3102 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/bebe5acc-07c3-4279-b836-7d5489776b31/ENCFF973OZS.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR428ZCP Signal\ track wgEncodeReg4Epigenetics_ENCFF973OZS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF060TLH ENCSR479WQX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1 GZF1 peaks 4 3102 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/02830cc3-6b3f-486b-922b-e10f73b396a2/ENCFF060TLH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1 GZF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR479WQX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF060TLH\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_rev Tc:H1ToHsc_Day09Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse 0 3102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_rev Tc:H1ToHsc_Day09Br2- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse 1 3102 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep2.CNhs13970.13530-145G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep2_CNhs13970_13530-145G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13530-145G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep2_CNhs13970_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13530-145G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF737LQI ENCSR429RHR Peak bigBed 5 RKO DNase peak 4 3103 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9effba7e-c6b7-44e8-82b9-14b5e6712932/ENCFF737LQI.bigBed\ color 6,218,147\ labelFields none\ longLabel RKO DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR429RHR Peak\ track wgEncodeReg4Epigenetics_ENCFF737LQI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF758QHA ENCSR479WQX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1 GZF1 ENCSR479WQX signal 2 3103 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/16a62027-f5d9-4cb3-acfc-706b652eef25/ENCFF758QHA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GZF1 GZF1 ENCSR479WQX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR479WQX Signal\ track wgEncodeReg4TfChip_ENCFF758QHA\ type bigWig\ visibility full\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_fwd Tc:H1ToHsc_Day09Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward 0 3103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_fwd Tc:H1ToHsc_Day09Br3+ bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward 1 3103 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF393TOX ENCSR429RHR Signal bigWig RKO DNase signal 2 3104 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/c1eb903b-cf7b-41f4-ac1f-c19108aeb7b1/ENCFF393TOX.bigWig\ color 6,218,147\ longLabel RKO DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR429RHR Signal\ track wgEncodeReg4Epigenetics_ENCFF393TOX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF375GID ENCSR480LIS Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) ATF3 peaks 4 3104 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/01a00f9a-77e5-4f26-b10e-e91456cf74ae/ENCFF375GID.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR480LIS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF375GID\ type bigBed 5\ useScore 1\ visibility squish\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_rev Tc:H1ToHsc_Day09Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse 0 3104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:H1ToHsc_Day09Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_rev Tc:H1ToHsc_Day09Br3- bigWig H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse 1 3104 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/H1%20embryonic%20stem%20cells%20differentiation%20to%20CD34%2b%20HSC%2c%20day09%2c%20biol_rep3.CNhs13971.13531-145G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel H1 embryonic stem cells differentiation to CD34+ HSC, day09, biol_rep3_CNhs13971_13531-145G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13531-145G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:H1ToHsc_Day09Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track H1EmbryonicStemCellsDifferentiationToCD34HSCDay09BiolRep3_CNhs13971_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13531-145G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF262NUN ENCSR429VWL Peak bigBed 5 Upper lobe of left lung tissue female adult 51 years H3K4me3 peak 4 3105 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/14f5a782-3495-4691-8e01-1d12d7a9d426/ENCFF262NUN.bigBed\ color 255,0,0\ longLabel Upper lobe of left lung tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR429VWL Peak\ track wgEncodeReg4Epigenetics_ENCFF262NUN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF967RRH ENCSR480LIS Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) ATF3 ENCSR480LIS signal 2 3105 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/8f1473dd-be9c-4f06-b8cb-961ff2a47a66/ENCFF967RRH.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) ATF3 ENCSR480LIS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR480LIS Signal\ track wgEncodeReg4TfChip_ENCFF967RRH\ type bigWig\ visibility full\ HIPSCCl2BiolRep1_CNhs14217_ctss_fwd Tc:hIPS+CCl2Br1+ bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward 0 3105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep1_CNhs14217_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep1_CNhs14217_tpm_fwd Tc:hIPS+CCl2Br1+ bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward 1 3105 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep1_CNhs14217_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF282VQS ENCSR429VWL Signal bigWig Upper lobe of left lung tissue female adult 51 years H3K4me3 signal 2 3106 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/0cf3f93c-39ba-42e2-a1f8-51a7e11bd6fe/ENCFF282VQS.bigWig\ color 255,0,0\ longLabel Upper lobe of left lung tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR429VWL Signal\ track wgEncodeReg4Epigenetics_ENCFF282VQS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF224AQL ENCSR481AIK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB3 ZBTB3 peaks 4 3106 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/1039b66e-28c6-4773-b726-1b219bc3824a/ENCFF224AQL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB3 ZBTB3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR481AIK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF224AQL\ type bigBed 5\ useScore 1\ visibility squish\ HIPSCCl2BiolRep1_CNhs14217_ctss_rev Tc:hIPS+CCl2Br1- bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse 0 3106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep1_CNhs14217_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep1_CNhs14217_tpm_rev Tc:hIPS+CCl2Br1- bigWig hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse 1 3106 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep1.CNhs14217.14383-156B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep1_CNhs14217_14383-156B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14383-156B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep1_CNhs14217_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14383-156B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF340OYR ENCSR429YAE Peak bigBed 5 IPS-18a H3K27ac peak 4 3107 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2e70cb22-559d-407f-a4cf-45683be5ab69/ENCFF340OYR.bigBed\ color 181,145,0\ longLabel IPS-18a H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR429YAE Peak\ track wgEncodeReg4Epigenetics_ENCFF340OYR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF805GDK ENCSR481AIK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB3 ZBTB3 ENCSR481AIK signal 2 3107 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/1af8f66a-31e8-4594-98cc-7396c4928a10/ENCFF805GDK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB3 ZBTB3 ENCSR481AIK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR481AIK Signal\ track wgEncodeReg4TfChip_ENCFF805GDK\ type bigWig\ visibility full\ HIPSCCl2BiolRep2_CNhs14218_ctss_fwd Tc:hIPS+CCl2Br2+ bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward 0 3107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep2_CNhs14218_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep2_CNhs14218_tpm_fwd Tc:hIPS+CCl2Br2+ bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward 1 3107 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep2_CNhs14218_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF071JJT ENCSR429YAE Signal bigWig IPS-18a H3K27ac signal 2 3108 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e38c92b8-0843-4064-a3a4-c04920688a22/ENCFF071JJT.bigWig\ color 181,145,0\ longLabel IPS-18a H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR429YAE Signal\ track wgEncodeReg4Epigenetics_ENCFF071JJT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF303WRD ENCSR481FEC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB8A ZBTB8A peaks 4 3108 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/256ce3d1-e48b-4d6b-89bf-1bc011fbc986/ENCFF303WRD.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB8A ZBTB8A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR481FEC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF303WRD\ type bigBed 5\ useScore 1\ visibility squish\ HIPSCCl2BiolRep2_CNhs14218_ctss_rev Tc:hIPS+CCl2Br2- bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse 0 3108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep2_CNhs14218_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep2_CNhs14218_tpm_rev Tc:hIPS+CCl2Br2- bigWig hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse 1 3108 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep2.CNhs14218.14384-156C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep2_CNhs14218_14384-156C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14384-156C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep2_CNhs14218_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14384-156C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF485JLF ENCSR430RVP Peak bigBed 5 Amnion tissue male embryo 16 weeks H3K27ac peak 4 3109 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/42abfe6f-6424-4865-b840-d2b8969b8bd6/ENCFF485JLF.bigBed\ color 181,145,0\ longLabel Amnion tissue male embryo 16 weeks H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR430RVP Peak\ track wgEncodeReg4Epigenetics_ENCFF485JLF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF261TFA ENCSR481FEC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB8A ZBTB8A ENCSR481FEC signal 2 3109 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/5d9cbda6-b28c-4414-aba9-1e67972025be/ENCFF261TFA.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB8A ZBTB8A ENCSR481FEC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR481FEC Signal\ track wgEncodeReg4TfChip_ENCFF261TFA\ type bigWig\ visibility full\ HIPSCCl2BiolRep3_CNhs14219_ctss_fwd Tc:hIPS+CCl2Br3+ bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward 0 3109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep3_CNhs14219_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep3_CNhs14219_tpm_fwd Tc:hIPS+CCl2Br3+ bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward 1 3109 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSCCl2BiolRep3_CNhs14219_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF437CFO ENCSR430RVP Signal bigWig Amnion tissue male embryo 16 weeks H3K27ac signal 2 3110 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/0de7b58e-a247-47a5-9fdc-c16e3eaa7343/ENCFF437CFO.bigWig\ color 181,145,0\ longLabel Amnion tissue male embryo 16 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR430RVP Signal\ track wgEncodeReg4Epigenetics_ENCFF437CFO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF747SCJ ENCSR481YWD Peak bigBed 5 A549 SMC3 peaks 4 3110 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/9ce9105b-8250-447d-aeed-2ed71ebcc8cd/ENCFF747SCJ.bigBed\ labelFields none\ longLabel A549 SMC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR481YWD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF747SCJ\ type bigBed 5\ useScore 1\ visibility squish\ HIPSCCl2BiolRep3_CNhs14219_ctss_rev Tc:hIPS+CCl2Br3- bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse 0 3110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPS+CCl2Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep3_CNhs14219_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ HIPSCCl2BiolRep3_CNhs14219_tpm_rev Tc:hIPS+CCl2Br3- bigWig hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse 1 3110 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%20%2bCCl2%2c%20biol_rep3.CNhs14219.14385-156C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS +CCl2, biol_rep3_CNhs14219_14385-156C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14385-156C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPS+CCl2Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSCCl2BiolRep3_CNhs14219_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14385-156C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF085HVQ ENCSR430TEE Peak bigBed 5 Lower leg skin tissue female adult 53 years CTCF peak 4 3111 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7db68bc5-7e5e-4ebb-abef-bed94a5407dd/ENCFF085HVQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Lower leg skin tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR430TEE Peak\ track wgEncodeReg4Epigenetics_ENCFF085HVQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF814GLB ENCSR481YWD Signal bigWig A549 SMC3 ENCSR481YWD signal 2 3111 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/81313554-3af6-462f-bb48-9b699ef1a437/ENCFF814GLB.bigWig\ color 130,163,45\ longLabel A549 SMC3 ENCSR481YWD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR481YWD Signal\ track wgEncodeReg4TfChip_ENCFF814GLB\ type bigWig\ visibility full\ HIPSBiolRep1_CNhs14214_ctss_fwd Tc:hIPSBr1+ bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_forward 0 3111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep1_CNhs14214_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_tpm_fwd Tc:hIPSBr1+ bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_forward 1 3111 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep1_CNhs14214_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF206TKN ENCSR430TEE Signal bigWig Lower leg skin tissue female adult 53 years CTCF signal 2 3112 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a1de8330-6fd9-4c05-bf90-01dca6d58a0b/ENCFF206TKN.bigWig\ color 0,176,240\ longLabel Lower leg skin tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR430TEE Signal\ track wgEncodeReg4Epigenetics_ENCFF206TKN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF299RSE ENCSR482BBZ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS1 GLIS1 peaks 4 3112 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/05f50569-1bbf-405f-93d0-d205e9de9d18/ENCFF299RSE.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS1 GLIS1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR482BBZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF299RSE\ type bigBed 5\ useScore 1\ visibility squish\ HIPSBiolRep1_CNhs14214_ctss_rev Tc:hIPSBr1- bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_reverse 0 3112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep1_CNhs14214_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ HIPSBiolRep1_CNhs14214_tpm_rev Tc:hIPSBr1- bigWig hIPS, biol_rep1_CNhs14214_14380-156B6_reverse 1 3112 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep1.CNhs14214.14380-156B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep1_CNhs14214_14380-156B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14380-156B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep1_CNhs14214_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14380-156B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF853JKX ENCSR430YRJ Peak bigBed 5 KMS-11 CTCF peak 4 3113 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/4326b7ce-8398-4cd2-8d40-ef06ea808ca9/ENCFF853JKX.bigBed\ color 0,176,240\ labelFields none\ longLabel KMS-11 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR430YRJ Peak\ track wgEncodeReg4Epigenetics_ENCFF853JKX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF334BKW ENCSR482BBZ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS1 GLIS1 ENCSR482BBZ signal 2 3113 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/bfe1e51b-ef22-4c4b-8614-55283001f68f/ENCFF334BKW.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS1 GLIS1 ENCSR482BBZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR482BBZ Signal\ track wgEncodeReg4TfChip_ENCFF334BKW\ type bigWig\ visibility full\ HIPSBiolRep2_CNhs14215_ctss_fwd Tc:hIPSBr2+ bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_forward 0 3113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep2_CNhs14215_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_tpm_fwd Tc:hIPSBr2+ bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_forward 1 3113 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep2_CNhs14215_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF650WNL ENCSR430YRJ Signal bigWig KMS-11 CTCF signal 2 3114 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/fa716651-aefa-47d2-877d-1fbf082782fa/ENCFF650WNL.bigWig\ color 0,176,240\ longLabel KMS-11 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR430YRJ Signal\ track wgEncodeReg4Epigenetics_ENCFF650WNL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF077XIZ ENCSR482PMN Peak bigBed 5 Spleen tissue female adult (51 years) CTCF peaks 4 3114 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/6e4cd50e-119c-4669-8a02-24460206d048/ENCFF077XIZ.bigBed\ labelFields none\ longLabel Spleen tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR482PMN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF077XIZ\ type bigBed 5\ useScore 1\ visibility squish\ HIPSBiolRep2_CNhs14215_ctss_rev Tc:hIPSBr2- bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_reverse 0 3114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep2_CNhs14215_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ HIPSBiolRep2_CNhs14215_tpm_rev Tc:hIPSBr2- bigWig hIPS, biol_rep2_CNhs14215_14381-156B7_reverse 1 3114 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep2.CNhs14215.14381-156B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep2_CNhs14215_14381-156B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14381-156B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep2_CNhs14215_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14381-156B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF155KPP ENCSR431UEM Signal bigWig Left hindlimb tissue male embryo 81 days DNase signal 2 3115 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/7f5a6dcf-eb80-47b5-9106-885db16d1f19/ENCFF155KPP.bigWig\ color 6,218,147\ longLabel Left hindlimb tissue male embryo 81 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR431UEM Signal\ track wgEncodeReg4Epigenetics_ENCFF155KPP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF101RDN ENCSR482PMN Signal bigWig Spleen tissue female adult (51 years) CTCF ENCSR482PMN signal 2 3115 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/dd00fd7c-8dd2-4c76-b983-581dd8f20524/ENCFF101RDN.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (51 years) CTCF ENCSR482PMN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR482PMN Signal\ track wgEncodeReg4TfChip_ENCFF101RDN\ type bigWig\ visibility full\ HIPSBiolRep3_CNhs14216_ctss_fwd Tc:hIPSBr3+ bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_forward 0 3115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep3_CNhs14216_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_tpm_fwd Tc:hIPSBr3+ bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_forward 1 3115 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track HIPSBiolRep3_CNhs14216_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF246SHS ENCSR432DPY Peak bigBed 5 Body of pancreas tissue female adult 51 years H3K27ac peak 4 3116 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/a682cfbc-94ef-45fc-8dce-18033adc85e2/ENCFF246SHS.bigBed\ color 181,145,0\ longLabel Body of pancreas tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432DPY Peak\ track wgEncodeReg4Epigenetics_ENCFF246SHS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF916JXQ ENCSR482TWQ Peak bigBed 5 GM12878 RAD51 peaks 4 3116 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/411363f8-1c7e-41f5-ba4a-644c206847e4/ENCFF916JXQ.bigBed\ labelFields none\ longLabel GM12878 RAD51 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR482TWQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF916JXQ\ type bigBed 5\ useScore 1\ visibility squish\ HIPSBiolRep3_CNhs14216_ctss_rev Tc:hIPSBr3- bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_reverse 0 3116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:hIPSBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep3_CNhs14216_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ HIPSBiolRep3_CNhs14216_tpm_rev Tc:hIPSBr3- bigWig hIPS, biol_rep3_CNhs14216_14382-156B8_reverse 1 3116 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hIPS%2c%20biol_rep3.CNhs14216.14382-156B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hIPS, biol_rep3_CNhs14216_14382-156B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=14382-156B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:hIPSBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track HIPSBiolRep3_CNhs14216_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:14382-156B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF853NJX ENCSR432DPY Signal bigWig Body of pancreas tissue female adult 51 years H3K27ac signal 2 3117 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f7aab266-0252-4dce-95b9-b978af4bc338/ENCFF853NJX.bigWig\ color 181,145,0\ longLabel Body of pancreas tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432DPY Signal\ track wgEncodeReg4Epigenetics_ENCFF853NJX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF622TBK ENCSR482TWQ Signal bigWig GM12878 RAD51 ENCSR482TWQ signal 2 3117 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/555d675c-5898-41ae-bbd7-85a01e56d30b/ENCFF622TBK.bigWig\ color 254,75,173\ longLabel GM12878 RAD51 ENCSR482TWQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR482TWQ Signal\ track wgEncodeReg4TfChip_ENCFF622TBK\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_fwd Tc:K562ToHemin_00hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward 0 3117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_fwd Tc:K562ToHemin_00hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward 1 3117 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF310MNL ENCSR432GOP Peak bigBed 5 Lower leg skin tissue male adult 37 years H3K4me3 peak 4 3118 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f3976eec-7ffd-4170-80d4-e0052e34c20c/ENCFF310MNL.bigBed\ color 255,0,0\ longLabel Lower leg skin tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432GOP Peak\ track wgEncodeReg4Epigenetics_ENCFF310MNL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF881RGF ENCSR484DDO Peak bigBed 5 Body of pancreas tissue female adult (53 years) CTCF peaks 4 3118 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/edc8a545-eedc-4667-bfe2-80bdba8cfa23/ENCFF881RGF.bigBed\ labelFields none\ longLabel Body of pancreas tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR484DDO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF881RGF\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_rev Tc:K562ToHemin_00hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse 0 3118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_rev Tc:K562ToHemin_00hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse 1 3118 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep1.CNhs12458.13079-140B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep1_CNhs12458_13079-140B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13079-140B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep1_CNhs12458_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13079-140B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF230VWV ENCSR432GOP Signal bigWig Lower leg skin tissue male adult 37 years H3K4me3 signal 2 3119 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/e340390f-ba46-48c4-bb62-465b5d8822f6/ENCFF230VWV.bigWig\ color 255,0,0\ longLabel Lower leg skin tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432GOP Signal\ track wgEncodeReg4Epigenetics_ENCFF230VWV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF049EBZ ENCSR484DDO Signal bigWig Body of pancreas tissue female adult (53 years) CTCF ENCSR484DDO signal 2 3119 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/b55c811b-ee81-411c-b1df-c478183cd225/ENCFF049EBZ.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (53 years) CTCF ENCSR484DDO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR484DDO Signal\ track wgEncodeReg4TfChip_ENCFF049EBZ\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_fwd Tc:K562ToHemin_00hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward 0 3119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_fwd Tc:K562ToHemin_00hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward 1 3119 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF082RJS ENCSR432KIH Peak bigBed 5 Spleen tissue male adult 34 years H3K4me3 peak 4 3120 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/01324944-cb5b-4bcb-8d92-cc618112a310/ENCFF082RJS.bigBed\ color 255,0,0\ longLabel Spleen tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432KIH Peak\ track wgEncodeReg4Epigenetics_ENCFF082RJS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF967QCV ENCSR485BEB Peak bigBed 5 Thyroid gland tissue female adult (53 years) POLR2A peaks 4 3120 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/a6319295-3c07-40f3-8148-8898a4f6b4d8/ENCFF967QCV.bigBed\ labelFields none\ longLabel Thyroid gland tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR485BEB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF967QCV\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_rev Tc:K562ToHemin_00hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse 0 3120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_rev Tc:K562ToHemin_00hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse 1 3120 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep2.CNhs12684.13145-140I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep2_CNhs12684_13145-140I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13145-140I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep2_CNhs12684_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13145-140I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF271FIA ENCSR432KIH Signal bigWig Spleen tissue male adult 34 years H3K4me3 signal 2 3121 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/d301eeb0-f001-41c8-a74b-f229cbf8a8cc/ENCFF271FIA.bigWig\ color 255,0,0\ longLabel Spleen tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432KIH Signal\ track wgEncodeReg4Epigenetics_ENCFF271FIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF114FIM ENCSR485BEB Signal bigWig Thyroid gland tissue female adult (53 years) POLR2A ENCSR485BEB signal 2 3121 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d98255d1-6952-4657-9a3a-e20b0dddd592/ENCFF114FIM.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (53 years) POLR2A ENCSR485BEB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR485BEB Signal\ track wgEncodeReg4TfChip_ENCFF114FIM\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_ctss_fwd Tc:K562ToHemin_00hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_forward 0 3121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep3.CNhs12786.13211-141G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13211-141G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_tpm_fwd Tc:K562ToHemin_00hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_forward 1 3121 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep3.CNhs12786.13211-141G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13211-141G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF456UJK ENCSR432LMR Peak bigBed 5 Mesothelial cell of epicardium H3K27ac peak 4 3122 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/760b65f4-c9eb-4ba8-a33e-668215e6a56c/ENCFF456UJK.bigBed\ color 181,145,0\ longLabel Mesothelial cell of epicardium H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432LMR Peak\ track wgEncodeReg4Epigenetics_ENCFF456UJK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF648SDH ENCSR485OYR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB25 ZBTB25 peaks 4 3122 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/2cb8380a-8567-4e25-bc9c-dbf27101e08d/ENCFF648SDH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB25 ZBTB25 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR485OYR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF648SDH\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_ctss_rev Tc:K562ToHemin_00hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_reverse 0 3122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep3.CNhs12786.13211-141G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13211-141G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_tpm_rev Tc:K562ToHemin_00hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_reverse 1 3122 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr00min%2c%20biol_rep3.CNhs12786.13211-141G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr00min, biol_rep3_CNhs12786_13211-141G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13211-141G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr00minBiolRep3_CNhs12786_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13211-141G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF109WCV ENCSR432LMR Signal bigWig Mesothelial cell of epicardium H3K27ac signal 2 3123 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/9289ffa7-d624-42bb-8324-c4ee32b8caf3/ENCFF109WCV.bigWig\ color 181,145,0\ longLabel Mesothelial cell of epicardium H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432LMR Signal\ track wgEncodeReg4Epigenetics_ENCFF109WCV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF670LNB ENCSR485OYR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB25 ZBTB25 ENCSR485OYR signal 2 3123 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f84b5b5c-46a5-4561-a25b-e7714b47e2a0/ENCFF670LNB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB25 ZBTB25 ENCSR485OYR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR485OYR Signal\ track wgEncodeReg4TfChip_ENCFF670LNB\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_ctss_fwd Tc:K562ToHemin_00hr15minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_forward 0 3123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep1.CNhs12459.13080-140B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13080-140B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_tpm_fwd Tc:K562ToHemin_00hr15minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_forward 1 3123 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep1.CNhs12459.13080-140B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13080-140B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr15minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF820UCJ ENCSR432QFU Signal bigWig Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 73 years DNase signal 2 3124 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/ad100e95-b179-4872-afd7-643508c5a866/ENCFF820UCJ.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue male adult 73 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR432QFU Signal\ track wgEncodeReg4Epigenetics_ENCFF820UCJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF237JBR ENCSR485VQV Peak bigBed 5 Suprapubic skin tissue male adult (37 years) CTCF peaks 4 3124 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/09/07/d8fef0bd-afdb-49c6-a69b-b23b5e167176/ENCFF237JBR.bigBed\ labelFields none\ longLabel Suprapubic skin tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR485VQV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF237JBR\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_ctss_rev Tc:K562ToHemin_00hr15minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_reverse 0 3124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep1.CNhs12459.13080-140B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13080-140B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_tpm_rev Tc:K562ToHemin_00hr15minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_reverse 1 3124 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep1.CNhs12459.13080-140B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep1_CNhs12459_13080-140B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13080-140B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr15minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep1_CNhs12459_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13080-140B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF060IBS ENCSR433NEX Peak bigBed 5 Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 3125 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/39265ffb-67de-43e0-9078-23dcdd255b24/ENCFF060IBS.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR433NEX Peak\ track wgEncodeReg4Epigenetics_ENCFF060IBS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF015NMW ENCSR485VQV Signal bigWig Suprapubic skin tissue male adult (37 years) CTCF ENCSR485VQV signal 2 3125 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/3fe2f05f-199e-477d-bb05-f90cd0f13bec/ENCFF015NMW.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (37 years) CTCF ENCSR485VQV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR485VQV Signal\ track wgEncodeReg4TfChip_ENCFF015NMW\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_ctss_fwd Tc:K562ToHemin_00hr15minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_forward 0 3125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep2.CNhs12686.13146-140I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13146-140I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_tpm_fwd Tc:K562ToHemin_00hr15minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_forward 1 3125 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep2.CNhs12686.13146-140I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13146-140I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr15minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF126WHA ENCSR433NEX Signal bigWig Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 3126 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/6ee8e04c-57ee-4761-a5a4-e660f7d60cb1/ENCFF126WHA.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR433NEX Signal\ track wgEncodeReg4Epigenetics_ENCFF126WHA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF968PEP ENCSR486IFJ Peak bigBed 5 K562 ESRRA peaks 4 3126 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/5f105e19-58b5-410c-b2a3-5d8d70d36168/ENCFF968PEP.bigBed\ labelFields none\ longLabel K562 ESRRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR486IFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF968PEP\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_ctss_rev Tc:K562ToHemin_00hr15minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_reverse 0 3126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep2.CNhs12686.13146-140I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13146-140I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_tpm_rev Tc:K562ToHemin_00hr15minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_reverse 1 3126 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep2.CNhs12686.13146-140I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep2_CNhs12686_13146-140I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13146-140I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr15minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep2_CNhs12686_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13146-140I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF266SRM ENCSR433PUR Peak bigBed 5 Radial glial cell stably expressing HES5 originated from H9 H3K4me3 peak 4 3127 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/bb58cff6-2343-4c72-aabb-f37768055b3c/ENCFF266SRM.bigBed\ color 255,0,0\ longLabel Radial glial cell stably expressing HES5 originated from H9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR433PUR Peak\ track wgEncodeReg4Epigenetics_ENCFF266SRM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF038YZT ENCSR486IFJ Signal bigWig K562 ESRRA ENCSR486IFJ signal 2 3127 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/366b4e08-b47e-4584-bca1-711b6df81f5a/ENCFF038YZT.bigWig\ color 254,75,173\ longLabel K562 ESRRA ENCSR486IFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR486IFJ Signal\ track wgEncodeReg4TfChip_ENCFF038YZT\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_ctss_fwd Tc:K562ToHemin_00hr15minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_forward 0 3127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep3.CNhs12787.13212-141G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13212-141G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_tpm_fwd Tc:K562ToHemin_00hr15minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_forward 1 3127 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep3.CNhs12787.13212-141G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13212-141G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr15minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF986LEV ENCSR433PUR Signal bigWig Radial glial cell stably expressing HES5 originated from H9 H3K4me3 signal 2 3128 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/77506ff9-0af8-4755-bf52-4ca02a40b7c0/ENCFF986LEV.bigWig\ color 255,0,0\ longLabel Radial glial cell stably expressing HES5 originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR433PUR Signal\ track wgEncodeReg4Epigenetics_ENCFF986LEV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF235FGV ENCSR486JYI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 peaks 4 3128 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/41c3f227-c279-4eeb-b27f-dca9ebeb8a20/ENCFF235FGV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR486JYI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF235FGV\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_ctss_rev Tc:K562ToHemin_00hr15minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_reverse 0 3128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep3.CNhs12787.13212-141G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13212-141G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_tpm_rev Tc:K562ToHemin_00hr15minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_reverse 1 3128 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr15min%2c%20biol_rep3.CNhs12787.13212-141G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr15min, biol_rep3_CNhs12787_13212-141G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13212-141G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr15minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr15minBiolRep3_CNhs12787_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13212-141G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF635PVA ENCSR433WOV Peak bigBed 5 Activated T-helper 9 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak 4 3129 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/0db2f97e-8c21-427a-a756-b42cf188293c/ENCFF635PVA.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-helper 9 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR433WOV Peak\ track wgEncodeReg4Epigenetics_ENCFF635PVA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF518RZY ENCSR486JYI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 ENCSR486JYI signal 2 3129 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/786c689d-12bf-45d2-946c-058bb8df472d/ENCFF518RZY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 ENCSR486JYI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR486JYI Signal\ track wgEncodeReg4TfChip_ENCFF518RZY\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_ctss_fwd Tc:K562ToHemin_00hr30minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_forward 0 3129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep1.CNhs12460.13081-140B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13081-140B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_tpm_fwd Tc:K562ToHemin_00hr30minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_forward 1 3129 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep1.CNhs12460.13081-140B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13081-140B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr30minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF760FTT ENCSR433WOV Signal bigWig Activated T-helper 9 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 3130 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/01ee83b7-44d1-4607-aa86-16ad700cb6cd/ENCFF760FTT.bigWig\ color 6,218,147\ longLabel Activated T-helper 9 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR433WOV Signal\ track wgEncodeReg4Epigenetics_ENCFF760FTT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF666AAW ENCSR487ASM Peak bigBed 5 MCF-7 SMARCA5 peaks 4 3130 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/230d44d3-9c2a-4dcf-a121-1f15696ed44d/ENCFF666AAW.bigBed\ labelFields none\ longLabel MCF-7 SMARCA5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR487ASM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF666AAW\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_ctss_rev Tc:K562ToHemin_00hr30minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_reverse 0 3130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep1.CNhs12460.13081-140B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13081-140B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_tpm_rev Tc:K562ToHemin_00hr30minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_reverse 1 3130 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep1.CNhs12460.13081-140B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep1_CNhs12460_13081-140B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13081-140B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr30minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep1_CNhs12460_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13081-140B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF353CRP ENCSR434AFF Peak bigBed 5 Neutrophil male H3K4me3 peak 4 3131 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/b5943420-3e87-403c-a7b5-6491b8a00c4b/ENCFF353CRP.bigBed\ color 255,0,0\ longLabel Neutrophil male H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434AFF Peak\ track wgEncodeReg4Epigenetics_ENCFF353CRP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF297PTK ENCSR487ASM Signal bigWig MCF-7 SMARCA5 ENCSR487ASM signal 2 3131 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/404fb8a2-e1be-4fb8-aa53-ac38987854bf/ENCFF297PTK.bigWig\ color 65,171,173\ longLabel MCF-7 SMARCA5 ENCSR487ASM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR487ASM Signal\ track wgEncodeReg4TfChip_ENCFF297PTK\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_ctss_fwd Tc:K562ToHemin_00hr30minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_forward 0 3131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep2.CNhs12687.13147-140I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13147-140I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_tpm_fwd Tc:K562ToHemin_00hr30minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_forward 1 3131 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep2.CNhs12687.13147-140I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13147-140I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF336XON ENCSR434AFF Signal bigWig Neutrophil male H3K4me3 signal 2 3132 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/b1c2236e-a5c6-49e4-84c1-7501215d3bf2/ENCFF336XON.bigWig\ color 255,0,0\ longLabel Neutrophil male H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434AFF Signal\ track wgEncodeReg4Epigenetics_ENCFF336XON\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF873EPM ENCSR487CPI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP64 ZFP64 peaks 4 3132 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a4340202-15d5-4284-8822-54b5385a62d5/ENCFF873EPM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP64 ZFP64 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR487CPI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF873EPM\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_ctss_rev Tc:K562ToHemin_00hr30minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_reverse 0 3132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep2.CNhs12687.13147-140I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13147-140I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_tpm_rev Tc:K562ToHemin_00hr30minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_reverse 1 3132 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep2.CNhs12687.13147-140I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep2_CNhs12687_13147-140I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13147-140I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep2_CNhs12687_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13147-140I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF383WMO ENCSR434OBM Peak bigBed 5 Foreskin melanocyte male newborn DNase peak 4 3133 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/2b81791a-18af-4753-9737-68897f134ebc/ENCFF383WMO.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin melanocyte male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434OBM Peak\ track wgEncodeReg4Epigenetics_ENCFF383WMO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF997XLE ENCSR487CPI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP64 ZFP64 ENCSR487CPI signal 2 3133 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1d1c6046-192c-4d6a-9c23-9984a597a0aa/ENCFF997XLE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP64 ZFP64 ENCSR487CPI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR487CPI Signal\ track wgEncodeReg4TfChip_ENCFF997XLE\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_ctss_fwd Tc:K562ToHemin_00hr30minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_forward 0 3133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep3.CNhs12788.13213-141G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13213-141G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_tpm_fwd Tc:K562ToHemin_00hr30minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_forward 1 3133 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep3.CNhs12788.13213-141G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13213-141G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF226ROM ENCSR434OBM Signal bigWig Foreskin melanocyte male newborn DNase signal 2 3134 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/cc3eef1f-b065-4cc6-b90b-ff5bcb4eafd2/ENCFF226ROM.bigWig\ color 6,218,147\ longLabel Foreskin melanocyte male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434OBM Signal\ track wgEncodeReg4Epigenetics_ENCFF226ROM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF892HVG ENCSR487LUQ Peak bigBed 5 HepG2 PHF8 peaks 4 3134 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/e068f2b1-71e8-4b69-8988-97f54fc9e5f6/ENCFF892HVG.bigBed\ labelFields none\ longLabel HepG2 PHF8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR487LUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF892HVG\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_ctss_rev Tc:K562ToHemin_00hr30minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_reverse 0 3134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep3.CNhs12788.13213-141G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13213-141G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_tpm_rev Tc:K562ToHemin_00hr30minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_reverse 1 3134 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr30min%2c%20biol_rep3.CNhs12788.13213-141G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr30min, biol_rep3_CNhs12788_13213-141G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13213-141G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr30minBiolRep3_CNhs12788_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13213-141G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF512XYE ENCSR434WEY Peak bigBed 5 Chondrocyte H3K4me3 peak 4 3135 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/d5f6ae46-e10a-4e42-8c78-ca789ad77595/ENCFF512XYE.bigBed\ color 255,0,0\ longLabel Chondrocyte H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434WEY Peak\ track wgEncodeReg4Epigenetics_ENCFF512XYE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF652XYW ENCSR487LUQ Signal bigWig HepG2 PHF8 ENCSR487LUQ signal 2 3135 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/89cae133-e946-4df7-93c8-ba636a5294cd/ENCFF652XYW.bigWig\ color 137,152,82\ longLabel HepG2 PHF8 ENCSR487LUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR487LUQ Signal\ track wgEncodeReg4TfChip_ENCFF652XYW\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_ctss_fwd Tc:K562ToHemin_00hr45minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_forward 0 3135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep1.CNhs12461.13082-140B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13082-140B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_tpm_fwd Tc:K562ToHemin_00hr45minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_forward 1 3135 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep1.CNhs12461.13082-140B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13082-140B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr45minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF466YVQ ENCSR434WEY Signal bigWig Chondrocyte H3K4me3 signal 2 3136 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/770f0afe-14bd-41cd-86df-65c84d1644c8/ENCFF466YVQ.bigWig\ color 255,0,0\ longLabel Chondrocyte H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434WEY Signal\ track wgEncodeReg4Epigenetics_ENCFF466YVQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF178DRC ENCSR488EES Peak bigBed 5 HepG2 NFE2L2 peaks 4 3136 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/507b198d-c4bb-4dca-8e69-8aebf44bcd05/ENCFF178DRC.bigBed\ labelFields none\ longLabel HepG2 NFE2L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR488EES Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF178DRC\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_ctss_rev Tc:K562ToHemin_00hr45minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_reverse 0 3136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep1.CNhs12461.13082-140B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13082-140B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_tpm_rev Tc:K562ToHemin_00hr45minBr1- bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_reverse 1 3136 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep1.CNhs12461.13082-140B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep1_CNhs12461_13082-140B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13082-140B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr45minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep1_CNhs12461_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13082-140B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF857SLT ENCSR434XLP Peak bigBed 5 Tibial nerve tissue male adult 37 years CTCF peak 4 3137 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4f5135f2-598b-49bc-86a6-5e546acc5942/ENCFF857SLT.bigBed\ color 0,176,240\ labelFields none\ longLabel Tibial nerve tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434XLP Peak\ track wgEncodeReg4Epigenetics_ENCFF857SLT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF690PPG ENCSR488EES Signal bigWig HepG2 NFE2L2 ENCSR488EES signal 2 3137 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/0d0aad12-2639-4038-a448-1721a1c5b219/ENCFF690PPG.bigWig\ color 137,152,82\ longLabel HepG2 NFE2L2 ENCSR488EES signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR488EES Signal\ track wgEncodeReg4TfChip_ENCFF690PPG\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_ctss_fwd Tc:K562ToHemin_00hr45minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_forward 0 3137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep2.CNhs12688.13148-140I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13148-140I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_tpm_fwd Tc:K562ToHemin_00hr45minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_forward 1 3137 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep2.CNhs12688.13148-140I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13148-140I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr45minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF670BZH ENCSR434XLP Signal bigWig Tibial nerve tissue male adult 37 years CTCF signal 2 3138 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/0a05395e-a222-433e-8ce1-a4e5289d88e9/ENCFF670BZH.bigWig\ color 0,176,240\ longLabel Tibial nerve tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR434XLP Signal\ track wgEncodeReg4Epigenetics_ENCFF670BZH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF141MBP ENCSR488ZNK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646 ZNF646 peaks 4 3138 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/a9fd3ab9-26b4-4dae-a57a-eaf7882ce2df/ENCFF141MBP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646 ZNF646 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR488ZNK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF141MBP\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_ctss_rev Tc:K562ToHemin_00hr45minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_reverse 0 3138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep2.CNhs12688.13148-140I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13148-140I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_tpm_rev Tc:K562ToHemin_00hr45minBr2- bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_reverse 1 3138 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep2.CNhs12688.13148-140I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep2_CNhs12688_13148-140I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13148-140I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr45minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep2_CNhs12688_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13148-140I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF897MYW ENCSR435FGK Peak bigBed 5 A673 H3K4me3 peak 4 3139 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/5a17eb43-942c-4765-9148-e4a09c7befc1/ENCFF897MYW.bigBed\ color 255,0,0\ longLabel A673 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR435FGK Peak\ track wgEncodeReg4Epigenetics_ENCFF897MYW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF253YSN ENCSR488ZNK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646 ZNF646 ENCSR488ZNK signal 2 3139 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/4faa3a5d-74d2-4a5b-8d3c-3c341a652532/ENCFF253YSN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF646 ZNF646 ENCSR488ZNK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR488ZNK Signal\ track wgEncodeReg4TfChip_ENCFF253YSN\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_ctss_fwd Tc:K562ToHemin_00hr45minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_forward 0 3139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep3.CNhs12789.13214-141H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13214-141H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_tpm_fwd Tc:K562ToHemin_00hr45minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_forward 1 3139 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep3.CNhs12789.13214-141H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13214-141H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr45minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF958CFK ENCSR435FGK Signal bigWig A673 H3K4me3 signal 2 3140 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/71532d4c-f66d-4dbb-96f9-19c773280873/ENCFF958CFK.bigWig\ color 255,0,0\ longLabel A673 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR435FGK Signal\ track wgEncodeReg4Epigenetics_ENCFF958CFK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF816BTR ENCSR489QDF Peak bigBed 5 Excitatory neuron CTCF peaks 4 3140 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/a7e503ff-c215-4ba3-8cef-22930c279dc5/ENCFF816BTR.bigBed\ labelFields none\ longLabel Excitatory neuron CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR489QDF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF816BTR\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_ctss_rev Tc:K562ToHemin_00hr45minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_reverse 0 3140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep3.CNhs12789.13214-141H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13214-141H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_tpm_rev Tc:K562ToHemin_00hr45minBr3- bigWig K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_reverse 1 3140 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2000hr45min%2c%20biol_rep3.CNhs12789.13214-141H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 00hr45min, biol_rep3_CNhs12789_13214-141H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13214-141H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_00hr45minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin00hr45minBiolRep3_CNhs12789_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13214-141H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF145TXU ENCSR435NHO Peak bigBed 5 Embryonic facial prominence tissue embryo 53 days and embryo 58 days DNase peak 4 3141 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0287e7e9-b626-4a07-871e-5c89645314c2/ENCFF145TXU.bigBed\ color 6,218,147\ labelFields none\ longLabel Embryonic facial prominence tissue embryo 53 days and embryo 58 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR435NHO Peak\ track wgEncodeReg4Epigenetics_ENCFF145TXU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF536VOI ENCSR489QDF Signal bigWig Excitatory neuron CTCF ENCSR489QDF signal 2 3141 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/be3bb12c-628f-4b4f-af4c-04a4c6c746d6/ENCFF536VOI.bigWig\ color 155,155,18\ longLabel Excitatory neuron CTCF ENCSR489QDF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR489QDF Signal\ track wgEncodeReg4TfChip_ENCFF536VOI\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_ctss_fwd Tc:K562ToHemin_01hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_forward 0 3141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep1.CNhs12462.13083-140B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13083-140B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_tpm_fwd Tc:K562ToHemin_01hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_forward 1 3141 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep1.CNhs12462.13083-140B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13083-140B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF565SPF ENCSR435NHO Signal bigWig Embryonic facial prominence tissue embryo 53 days and embryo 58 days DNase signal 2 3142 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/c9efc2e7-3d90-4f9a-a889-886ef26e23d4/ENCFF565SPF.bigWig\ color 6,218,147\ longLabel Embryonic facial prominence tissue embryo 53 days and embryo 58 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR435NHO Signal\ track wgEncodeReg4Epigenetics_ENCFF565SPF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF894AYY ENCSR490AMH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA2 FOXA2 peaks 4 3142 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/5b9621ec-9cdb-412b-b4b4-79e13f497819/ENCFF894AYY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA2 FOXA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR490AMH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF894AYY\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_ctss_rev Tc:K562ToHemin_01hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_reverse 0 3142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep1.CNhs12462.13083-140B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13083-140B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_tpm_rev Tc:K562ToHemin_01hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_reverse 1 3142 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep1.CNhs12462.13083-140B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep1_CNhs12462_13083-140B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13083-140B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep1_CNhs12462_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13083-140B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF285XJM ENCSR436JNB Peak bigBed 5 Spleen tissue female adult 61 years H3K27ac peak 4 3143 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/a036efc5-4170-4bb1-be14-36365bffeaa4/ENCFF285XJM.bigBed\ color 181,145,0\ longLabel Spleen tissue female adult 61 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR436JNB Peak\ track wgEncodeReg4Epigenetics_ENCFF285XJM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF637NJN ENCSR490AMH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA2 FOXA2 ENCSR490AMH signal 2 3143 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/3cb67f45-5ba2-49da-9506-5c759354bbf4/ENCFF637NJN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA2 FOXA2 ENCSR490AMH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR490AMH Signal\ track wgEncodeReg4TfChip_ENCFF637NJN\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_ctss_fwd Tc:K562ToHemin_01hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_forward 0 3143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep2.CNhs12689.13149-140I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13149-140I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_tpm_fwd Tc:K562ToHemin_01hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_forward 1 3143 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep2.CNhs12689.13149-140I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13149-140I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF438NSZ ENCSR436JNB Signal bigWig Spleen tissue female adult 61 years H3K27ac signal 2 3144 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/7748ec3a-73a1-44e7-aef1-6ab269d4ac93/ENCFF438NSZ.bigWig\ color 181,145,0\ longLabel Spleen tissue female adult 61 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR436JNB Signal\ track wgEncodeReg4Epigenetics_ENCFF438NSZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF956TPS ENCSR490LWA Peak bigBed 5 K562 stably expressing CEBPG CEBPG peaks 4 3144 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ed663dac-565d-4448-bf49-5f494168310e/ENCFF956TPS.bigBed\ labelFields none\ longLabel K562 stably expressing CEBPG CEBPG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR490LWA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF956TPS\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_ctss_rev Tc:K562ToHemin_01hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_reverse 0 3144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep2.CNhs12689.13149-140I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13149-140I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_tpm_rev Tc:K562ToHemin_01hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_reverse 1 3144 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep2.CNhs12689.13149-140I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep2_CNhs12689_13149-140I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13149-140I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep2_CNhs12689_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13149-140I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF240KIZ ENCSR436JRE Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase peak 4 3145 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/0cbd9e16-fad4-4b26-87ff-67877e7e9719/ENCFF240KIZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR436JRE Peak\ track wgEncodeReg4Epigenetics_ENCFF240KIZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF443SWM ENCSR490LWA Signal bigWig K562 stably expressing CEBPG CEBPG ENCSR490LWA signal 2 3145 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/52b0325b-bad0-4cad-bbc2-0aa9a1117cec/ENCFF443SWM.bigWig\ color 254,75,173\ longLabel K562 stably expressing CEBPG CEBPG ENCSR490LWA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR490LWA Signal\ track wgEncodeReg4TfChip_ENCFF443SWM\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_ctss_fwd Tc:K562ToHemin_01hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_forward 0 3145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep3.CNhs12790.13215-141H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13215-141H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_tpm_fwd Tc:K562ToHemin_01hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_forward 1 3145 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep3.CNhs12790.13215-141H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13215-141H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF663KDS ENCSR436JRE Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase signal 2 3146 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/cc941ad7-98f0-4faf-be83-3389e67b2b72/ENCFF663KDS.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR436JRE Signal\ track wgEncodeReg4Epigenetics_ENCFF663KDS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF099BVK ENCSR491EBY Peak bigBed 5 K562 ARID2 peaks 4 3146 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/82c911b3-3c56-4993-a899-7c22d1e955c2/ENCFF099BVK.bigBed\ labelFields none\ longLabel K562 ARID2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR491EBY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF099BVK\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_ctss_rev Tc:K562ToHemin_01hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_reverse 0 3146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep3.CNhs12790.13215-141H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13215-141H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_tpm_rev Tc:K562ToHemin_01hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_reverse 1 3146 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr00min%2c%20biol_rep3.CNhs12790.13215-141H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr00min, biol_rep3_CNhs12790_13215-141H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13215-141H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr00minBiolRep3_CNhs12790_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13215-141H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF785UIC ENCSR437AYW Peak bigBed 5 Vagina tissue female adult 53 years DNase peak 4 3147 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/8fec4f84-1383-4b73-8186-9f2bf288e53a/ENCFF785UIC.bigBed\ color 6,218,147\ labelFields none\ longLabel Vagina tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437AYW Peak\ track wgEncodeReg4Epigenetics_ENCFF785UIC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF748CGJ ENCSR491EBY Signal bigWig K562 ARID2 ENCSR491EBY signal 2 3147 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/df85ede6-66fc-4d35-82ba-5f9e95c38233/ENCFF748CGJ.bigWig\ color 254,75,173\ longLabel K562 ARID2 ENCSR491EBY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR491EBY Signal\ track wgEncodeReg4TfChip_ENCFF748CGJ\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_ctss_fwd Tc:K562ToHemin_01hr20minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_forward 0 3147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep1.CNhs12463.13084-140B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13084-140B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_tpm_fwd Tc:K562ToHemin_01hr20minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_forward 1 3147 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep1.CNhs12463.13084-140B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13084-140B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr20minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF547JQK ENCSR437AYW Signal bigWig Vagina tissue female adult 53 years DNase signal 2 3148 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/68da207b-57c5-470c-babe-f55525722b60/ENCFF547JQK.bigWig\ color 6,218,147\ longLabel Vagina tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437AYW Signal\ track wgEncodeReg4Epigenetics_ENCFF547JQK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF216JHX ENCSR491PTJ Peak bigBed 5 Suprapubic skin tissue female adult (51 years) POLR2AphosphoS5 peaks 4 3148 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/76b1340d-a1d3-451c-b2dc-744bc90ddcc4/ENCFF216JHX.bigBed\ labelFields none\ longLabel Suprapubic skin tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR491PTJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF216JHX\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_ctss_rev Tc:K562ToHemin_01hr20minBr1- bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_reverse 0 3148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep1.CNhs12463.13084-140B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13084-140B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_tpm_rev Tc:K562ToHemin_01hr20minBr1- bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_reverse 1 3148 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep1.CNhs12463.13084-140B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep1_CNhs12463_13084-140B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13084-140B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr20minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep1_CNhs12463_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13084-140B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF913MOR ENCSR437KLY Peak bigBed 5 Kidney tissue female embryo 85 days DNase peak 4 3149 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/271c47bf-e6a9-4b61-85e8-480c7f2db64b/ENCFF913MOR.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue female embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437KLY Peak\ track wgEncodeReg4Epigenetics_ENCFF913MOR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF670DYE ENCSR491PTJ Signal bigWig Suprapubic skin tissue female adult (51 years) POLR2AphosphoS5 ENCSR491PTJ signal 2 3149 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/167b6294-0316-42f0-9f83-ce01704f56ee/ENCFF670DYE.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (51 years) POLR2AphosphoS5 ENCSR491PTJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR491PTJ Signal\ track wgEncodeReg4TfChip_ENCFF670DYE\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_ctss_fwd Tc:K562ToHemin_01hr20minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_forward 0 3149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep2.CNhs12690.13150-140I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13150-140I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_tpm_fwd Tc:K562ToHemin_01hr20minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_forward 1 3149 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep2.CNhs12690.13150-140I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13150-140I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr20minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF184QPT ENCSR437KLY Signal bigWig Kidney tissue female embryo 85 days DNase signal 2 3150 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/835c4d4c-2d11-462e-bc96-20643fe31d0c/ENCFF184QPT.bigWig\ color 6,218,147\ longLabel Kidney tissue female embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437KLY Signal\ track wgEncodeReg4Epigenetics_ENCFF184QPT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF849YZP ENCSR492FKD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF257 ZNF257 peaks 4 3150 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/213611a1-233d-4e37-a956-377f244189d6/ENCFF849YZP.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF257 ZNF257 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492FKD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF849YZP\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_ctss_rev Tc:K562ToHemin_01hr20minBr2- bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_reverse 0 3150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep2.CNhs12690.13150-140I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13150-140I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_tpm_rev Tc:K562ToHemin_01hr20minBr2- bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_reverse 1 3150 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep2.CNhs12690.13150-140I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep2_CNhs12690_13150-140I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13150-140I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr20minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep2_CNhs12690_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13150-140I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF232HLL ENCSR437OOJ Peak bigBed 5 Heart right ventricle tissue female adult 59 years ATAC peak 4 3151 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/a27e9bc2-4e47-4654-8feb-a89882303480/ENCFF232HLL.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 59 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437OOJ Peak\ track wgEncodeReg4Epigenetics_ENCFF232HLL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF056QUE ENCSR492FKD Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF257 ZNF257 ENCSR492FKD signal 2 3151 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ce6f20cd-714b-42e2-a7e7-6b11bcdabaf7/ENCFF056QUE.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF257 ZNF257 ENCSR492FKD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492FKD Signal\ track wgEncodeReg4TfChip_ENCFF056QUE\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_ctss_fwd Tc:K562ToHemin_01hr20minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_forward 0 3151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep3.CNhs12791.13216-141H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13216-141H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_tpm_fwd Tc:K562ToHemin_01hr20minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_forward 1 3151 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep3.CNhs12791.13216-141H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13216-141H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr20minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF355NHX ENCSR437OOJ Signal bigWig Heart right ventricle tissue female adult 59 years ATAC signal 2 3152 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/641f865b-65e1-4e27-a6d1-5f29381a15b7/ENCFF355NHX.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 59 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437OOJ Signal\ track wgEncodeReg4Epigenetics_ENCFF355NHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF742RIP ENCSR492IHH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISL2 ISL2 peaks 4 3152 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/710211a4-efbc-4874-89f8-0730a9e555db/ENCFF742RIP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISL2 ISL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492IHH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF742RIP\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_ctss_rev Tc:K562ToHemin_01hr20minBr3- bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_reverse 0 3152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep3.CNhs12791.13216-141H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13216-141H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_tpm_rev Tc:K562ToHemin_01hr20minBr3- bigWig K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_reverse 1 3152 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr20min%2c%20biol_rep3.CNhs12791.13216-141H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr20min, biol_rep3_CNhs12791_13216-141H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13216-141H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr20minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr20minBiolRep3_CNhs12791_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13216-141H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF700CNU ENCSR437PXY Peak bigBed 5 Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase peak 4 3153 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/09/adeb5c8d-4715-45af-8e69-d82a0712d480/ENCFF700CNU.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437PXY Peak\ track wgEncodeReg4Epigenetics_ENCFF700CNU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF630JUN ENCSR492IHH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISL2 ISL2 ENCSR492IHH signal 2 3153 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4d75bc0b-09ed-4a04-ba9f-e22bf1ea3f01/ENCFF630JUN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISL2 ISL2 ENCSR492IHH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492IHH Signal\ track wgEncodeReg4TfChip_ENCFF630JUN\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_ctss_fwd Tc:K562ToHemin_01hr40minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_forward 0 3153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep1.CNhs12464.13085-140B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13085-140B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_tpm_fwd Tc:K562ToHemin_01hr40minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_forward 1 3153 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep1.CNhs12464.13085-140B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13085-140B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr40minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF894IKL ENCSR437PXY Signal bigWig Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase signal 2 3154 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/09/268dd8d6-7bf2-4d46-86b2-35172f0e25ea/ENCFF894IKL.bigWig\ color 6,218,147\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437PXY Signal\ track wgEncodeReg4Epigenetics_ENCFF894IKL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF902SHC ENCSR492LTS Peak bigBed 5 K562 BCLAF1 peaks 4 3154 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e8a1f17a-ec9f-4ff9-abe6-bc942884889f/ENCFF902SHC.bigBed\ labelFields none\ longLabel K562 BCLAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492LTS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF902SHC\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_ctss_rev Tc:K562ToHemin_01hr40minBr1- bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_reverse 0 3154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep1.CNhs12464.13085-140B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13085-140B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_tpm_rev Tc:K562ToHemin_01hr40minBr1- bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_reverse 1 3154 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep1.CNhs12464.13085-140B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep1_CNhs12464_13085-140B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13085-140B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr40minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep1_CNhs12464_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13085-140B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF683JKD ENCSR437QMD Peak bigBed 5 Stomach tissue male child 3 years H3K27ac peak 4 3155 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/3d56daf3-2e3b-4949-8e85-0d1a49a999f5/ENCFF683JKD.bigBed\ color 181,145,0\ longLabel Stomach tissue male child 3 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437QMD Peak\ track wgEncodeReg4Epigenetics_ENCFF683JKD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF645TMQ ENCSR492LTS Signal bigWig K562 BCLAF1 ENCSR492LTS signal 2 3155 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/643a8718-70b1-418b-a6c7-0f6da7f56c9f/ENCFF645TMQ.bigWig\ color 254,75,173\ longLabel K562 BCLAF1 ENCSR492LTS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492LTS Signal\ track wgEncodeReg4TfChip_ENCFF645TMQ\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_ctss_fwd Tc:K562ToHemin_01hr40minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_forward 0 3155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep2.CNhs12691.13151-141A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13151-141A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_tpm_fwd Tc:K562ToHemin_01hr40minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_forward 1 3155 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep2.CNhs12691.13151-141A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13151-141A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr40minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF916TLI ENCSR437QMD Signal bigWig Stomach tissue male child 3 years H3K27ac signal 2 3156 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8dee7fd1-82a7-40fc-ae8c-53497f888041/ENCFF916TLI.bigWig\ color 181,145,0\ longLabel Stomach tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR437QMD Signal\ track wgEncodeReg4Epigenetics_ENCFF916TLI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF631QRY ENCSR492ZIW Peak bigBed 5 Thyroid gland tissue male adult (54 years) CTCF peaks 4 3156 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/892d9693-a169-4c07-8d8f-42e80a6c6cd8/ENCFF631QRY.bigBed\ labelFields none\ longLabel Thyroid gland tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492ZIW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF631QRY\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_ctss_rev Tc:K562ToHemin_01hr40minBr2- bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_reverse 0 3156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep2.CNhs12691.13151-141A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13151-141A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_tpm_rev Tc:K562ToHemin_01hr40minBr2- bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_reverse 1 3156 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep2.CNhs12691.13151-141A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep2_CNhs12691_13151-141A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13151-141A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr40minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep2_CNhs12691_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13151-141A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF428OFR ENCSR438BEX Peak bigBed 5 Mucosa of stomach tissue male adult 59 years H3K4me3 peak 4 3157 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/f77f5088-c55a-44fb-ac2d-0c63f354d7c8/ENCFF428OFR.bigBed\ color 255,0,0\ longLabel Mucosa of stomach tissue male adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438BEX Peak\ track wgEncodeReg4Epigenetics_ENCFF428OFR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF510THG ENCSR492ZIW Signal bigWig Thyroid gland tissue male adult (54 years) CTCF ENCSR492ZIW signal 2 3157 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9dcba5d7-25f2-4114-84a3-2c417af4ad2e/ENCFF510THG.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue male adult (54 years) CTCF ENCSR492ZIW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR492ZIW Signal\ track wgEncodeReg4TfChip_ENCFF510THG\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_ctss_fwd Tc:K562ToHemin_01hr40minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_forward 0 3157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep3.CNhs12792.13217-141H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13217-141H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_tpm_fwd Tc:K562ToHemin_01hr40minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_forward 1 3157 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep3.CNhs12792.13217-141H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13217-141H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr40minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF003GBT ENCSR438BEX Signal bigWig Mucosa of stomach tissue male adult 59 years H3K4me3 signal 2 3158 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7e84ea60-456a-4b69-9530-1e365dca1d5b/ENCFF003GBT.bigWig\ color 255,0,0\ longLabel Mucosa of stomach tissue male adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438BEX Signal\ track wgEncodeReg4Epigenetics_ENCFF003GBT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF062XMG ENCSR493APD Peak bigBed 5 Ovary tissue female adult (53 years) CTCF peaks 4 3158 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8f28af79-259b-4b73-b02f-5dbcffb59c4d/ENCFF062XMG.bigBed\ labelFields none\ longLabel Ovary tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR493APD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF062XMG\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_ctss_rev Tc:K562ToHemin_01hr40minBr3- bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_reverse 0 3158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep3.CNhs12792.13217-141H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13217-141H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_tpm_rev Tc:K562ToHemin_01hr40minBr3- bigWig K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_reverse 1 3158 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2001hr40min%2c%20biol_rep3.CNhs12792.13217-141H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 01hr40min, biol_rep3_CNhs12792_13217-141H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13217-141H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_01hr40minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin01hr40minBiolRep3_CNhs12792_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13217-141H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF381ZYH ENCSR438DSO Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult 36 years H3K4me3 peak 4 3159 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/0b97ea8f-bc1e-4839-97ca-6a4bda9bcd84/ENCFF381ZYH.bigBed\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive male adult 36 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438DSO Peak\ track wgEncodeReg4Epigenetics_ENCFF381ZYH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF971DUO ENCSR493APD Signal bigWig Ovary tissue female adult (53 years) CTCF ENCSR493APD signal 2 3159 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/66c0082c-1736-4796-b42c-e25688827b50/ENCFF971DUO.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (53 years) CTCF ENCSR493APD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR493APD Signal\ track wgEncodeReg4TfChip_ENCFF971DUO\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_ctss_fwd Tc:K562ToHemin_02hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_forward 0 3159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep1.CNhs12737.13086-140B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13086-140B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_tpm_fwd Tc:K562ToHemin_02hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_forward 1 3159 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep1.CNhs12737.13086-140B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13086-140B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF939CFQ ENCSR438DSO Signal bigWig Common myeloid progenitor, CD34-positive male adult 36 years H3K4me3 signal 2 3160 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/48c1b224-e8ff-406d-92a6-7e68049f64cb/ENCFF939CFQ.bigWig\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive male adult 36 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438DSO Signal\ track wgEncodeReg4Epigenetics_ENCFF939CFQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF066FRL ENCSR493VBX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN31 ZSCAN31 peaks 4 3160 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/3af9fd0b-f490-45ee-b7bf-364d5b45e7ff/ENCFF066FRL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN31 ZSCAN31 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR493VBX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF066FRL\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_ctss_rev Tc:K562ToHemin_02hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_reverse 0 3160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep1.CNhs12737.13086-140B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13086-140B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_tpm_rev Tc:K562ToHemin_02hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_reverse 1 3160 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep1.CNhs12737.13086-140B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep1_CNhs12737_13086-140B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13086-140B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep1_CNhs12737_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13086-140B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF858XXS ENCSR438KQU Peak bigBed 5 Middle frontal area 46 tissue female adult 83 years H3K27ac peak 4 3161 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/d7cfd590-1dd5-444a-805b-e5ddb996fce8/ENCFF858XXS.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 83 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438KQU Peak\ track wgEncodeReg4Epigenetics_ENCFF858XXS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF649VVD ENCSR493VBX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN31 ZSCAN31 ENCSR493VBX signal 2 3161 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/e335aabb-e6b6-49a1-9401-de08c6240671/ENCFF649VVD.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN31 ZSCAN31 ENCSR493VBX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR493VBX Signal\ track wgEncodeReg4TfChip_ENCFF649VVD\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_ctss_fwd Tc:K562ToHemin_02hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_forward 0 3161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep2.CNhs12692.13152-141A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13152-141A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_tpm_fwd Tc:K562ToHemin_02hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_forward 1 3161 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep2.CNhs12692.13152-141A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13152-141A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF398ITJ ENCSR438KQU Signal bigWig Middle frontal area 46 tissue female adult 83 years H3K27ac signal 2 3162 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/abbb459d-9f30-4091-946b-182e4b5d27f9/ENCFF398ITJ.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 83 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438KQU Signal\ track wgEncodeReg4Epigenetics_ENCFF398ITJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF495URH ENCSR494PWZ Peak bigBed 5 K562 ZC3H8 peaks 4 3162 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/e0879c19-490a-44f9-a9d1-86e4450733c1/ENCFF495URH.bigBed\ labelFields none\ longLabel K562 ZC3H8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494PWZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF495URH\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_ctss_rev Tc:K562ToHemin_02hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_reverse 0 3162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep2.CNhs12692.13152-141A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13152-141A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_tpm_rev Tc:K562ToHemin_02hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_reverse 1 3162 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep2.CNhs12692.13152-141A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep2_CNhs12692_13152-141A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13152-141A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep2_CNhs12692_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13152-141A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF195OAF ENCSR438LZG Peak bigBed 5 Stimulated activated naive B cell female adult 39 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours DNase peak 4 3163 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/ec7ffbc2-c881-413a-a00f-3c463835ebc2/ENCFF195OAF.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated naive B cell female adult 39 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438LZG Peak\ track wgEncodeReg4Epigenetics_ENCFF195OAF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF047UWV ENCSR494PWZ Signal bigWig K562 ZC3H8 ENCSR494PWZ signal 2 3163 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/e7d15b31-2471-46f0-99d3-753970099cb9/ENCFF047UWV.bigWig\ color 254,75,173\ longLabel K562 ZC3H8 ENCSR494PWZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494PWZ Signal\ track wgEncodeReg4TfChip_ENCFF047UWV\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_ctss_fwd Tc:K562ToHemin_02hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_forward 0 3163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep3.CNhs12794.13218-141H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13218-141H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_tpm_fwd Tc:K562ToHemin_02hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_forward 1 3163 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep3.CNhs12794.13218-141H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13218-141H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF086TUD ENCSR438LZG Signal bigWig Stimulated activated naive B cell female adult 39 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours DNase signal 2 3164 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/a7e6b75e-9fca-4594-b3bb-c6dfca8978f7/ENCFF086TUD.bigWig\ color 6,218,147\ longLabel Stimulated activated naive B cell female adult 39 years treated with 10 μg/mL anti-IgM for 72 hours, 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438LZG Signal\ track wgEncodeReg4Epigenetics_ENCFF086TUD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF791UHF ENCSR494TDU Peak bigBed 5 K562 NRF1 peaks 4 3164 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/39b0abaa-0a8e-41af-a71d-c18bc2fd9632/ENCFF791UHF.bigBed\ labelFields none\ longLabel K562 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494TDU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF791UHF\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_ctss_rev Tc:K562ToHemin_02hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_reverse 0 3164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep3.CNhs12794.13218-141H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13218-141H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_tpm_rev Tc:K562ToHemin_02hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_reverse 1 3164 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr00min%2c%20biol_rep3.CNhs12794.13218-141H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr00min, biol_rep3_CNhs12794_13218-141H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13218-141H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr00minBiolRep3_CNhs12794_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13218-141H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF628NZZ ENCSR438NCW Peak bigBed 5 Endocrine pancreas tissue male adult 46 years H3K4me3 peak 4 3165 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/bf92b921-4584-40ed-ab89-f5273376bd48/ENCFF628NZZ.bigBed\ color 255,0,0\ longLabel Endocrine pancreas tissue male adult 46 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438NCW Peak\ track wgEncodeReg4Epigenetics_ENCFF628NZZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF038PRI ENCSR494TDU Signal bigWig K562 NRF1 ENCSR494TDU signal 2 3165 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/23ace979-8170-4724-82e5-71c7932fb1b5/ENCFF038PRI.bigWig\ color 254,75,173\ longLabel K562 NRF1 ENCSR494TDU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494TDU Signal\ track wgEncodeReg4TfChip_ENCFF038PRI\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_ctss_fwd Tc:K562ToHemin_02hr30minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_forward 0 3165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep1.CNhs12465.13087-140B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13087-140B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_tpm_fwd Tc:K562ToHemin_02hr30minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_forward 1 3165 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep1.CNhs12465.13087-140B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13087-140B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr30minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF264ASR ENCSR438NCW Signal bigWig Endocrine pancreas tissue male adult 46 years H3K4me3 signal 2 3166 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/9c9e9ef5-7f6a-4cbf-9fd9-29ba93c520af/ENCFF264ASR.bigWig\ color 255,0,0\ longLabel Endocrine pancreas tissue male adult 46 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438NCW Signal\ track wgEncodeReg4Epigenetics_ENCFF264ASR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF128XQJ ENCSR494TNM Peak bigBed 5 Testis tissue male adult (37 years) CTCF peaks 4 3166 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a4767e01-5af8-48c1-bb09-35d8e2d8b8f0/ENCFF128XQJ.bigBed\ labelFields none\ longLabel Testis tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494TNM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF128XQJ\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_ctss_rev Tc:K562ToHemin_02hr30minBr1- bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_reverse 0 3166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep1.CNhs12465.13087-140B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13087-140B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_tpm_rev Tc:K562ToHemin_02hr30minBr1- bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_reverse 1 3166 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep1.CNhs12465.13087-140B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep1_CNhs12465_13087-140B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13087-140B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr30minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep1_CNhs12465_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13087-140B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF266MBV ENCSR438SPO Peak bigBed 5 Kidney tissue male adult 50 years H3K27ac peak 4 3167 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/83fe5e28-60a6-4f6b-8c5c-141a602de475/ENCFF266MBV.bigBed\ color 181,145,0\ longLabel Kidney tissue male adult 50 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438SPO Peak\ track wgEncodeReg4Epigenetics_ENCFF266MBV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF883KMQ ENCSR494TNM Signal bigWig Testis tissue male adult (37 years) CTCF ENCSR494TNM signal 2 3167 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/0318e0c3-0dca-40d9-83b9-6d9ba917a237/ENCFF883KMQ.bigWig\ color 139,140,140\ longLabel Testis tissue male adult (37 years) CTCF ENCSR494TNM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494TNM Signal\ track wgEncodeReg4TfChip_ENCFF883KMQ\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_ctss_fwd Tc:K562ToHemin_02hr30minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_forward 0 3167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep2.CNhs12693.13153-141A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13153-141A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_tpm_fwd Tc:K562ToHemin_02hr30minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_forward 1 3167 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep2.CNhs12693.13153-141A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13153-141A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF354FYC ENCSR438SPO Signal bigWig Kidney tissue male adult 50 years H3K27ac signal 2 3168 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/dd0cef5b-712b-4933-852a-94a9727e05bb/ENCFF354FYC.bigWig\ color 181,145,0\ longLabel Kidney tissue male adult 50 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438SPO Signal\ track wgEncodeReg4Epigenetics_ENCFF354FYC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF867JPF ENCSR494UQJ Peak bigBed 5 K562 NR3C1 peaks 4 3168 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/0c162100-2544-41e5-964b-abd1339debab/ENCFF867JPF.bigBed\ labelFields none\ longLabel K562 NR3C1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494UQJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF867JPF\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_ctss_rev Tc:K562ToHemin_02hr30minBr2- bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_reverse 0 3168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep2.CNhs12693.13153-141A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13153-141A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_tpm_rev Tc:K562ToHemin_02hr30minBr2- bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_reverse 1 3168 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep2.CNhs12693.13153-141A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep2_CNhs12693_13153-141A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13153-141A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep2_CNhs12693_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13153-141A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF567YTX ENCSR438TWI Peak bigBed 5 Muscle of back tissue male embryo 96 days DNase peak 4 3169 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/33dbcb1e-7d3e-4626-8f4d-989a27341de2/ENCFF567YTX.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue male embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438TWI Peak\ track wgEncodeReg4Epigenetics_ENCFF567YTX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF164ZYG ENCSR494UQJ Signal bigWig K562 NR3C1 ENCSR494UQJ signal 2 3169 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/41759022-7880-492a-a1da-98ef48e41490/ENCFF164ZYG.bigWig\ color 254,75,173\ longLabel K562 NR3C1 ENCSR494UQJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR494UQJ Signal\ track wgEncodeReg4TfChip_ENCFF164ZYG\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_ctss_fwd Tc:K562ToHemin_02hr30minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_forward 0 3169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep3.CNhs12795.13219-141H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13219-141H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_tpm_fwd Tc:K562ToHemin_02hr30minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_forward 1 3169 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep3.CNhs12795.13219-141H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13219-141H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF709VQA ENCSR438TWI Signal bigWig Muscle of back tissue male embryo 96 days DNase signal 2 3170 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/80f2ec84-88c9-4e7f-ad91-39991e26e4e2/ENCFF709VQA.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438TWI Signal\ track wgEncodeReg4Epigenetics_ENCFF709VQA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF661PNM ENCSR497JLX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 peaks 4 3170 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4b59df8a-4337-4625-828d-a27742f05f27/ENCFF661PNM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR497JLX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF661PNM\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_ctss_rev Tc:K562ToHemin_02hr30minBr3- bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_reverse 0 3170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep3.CNhs12795.13219-141H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13219-141H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_tpm_rev Tc:K562ToHemin_02hr30minBr3- bigWig K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_reverse 1 3170 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2002hr30min%2c%20biol_rep3.CNhs12795.13219-141H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 02hr30min, biol_rep3_CNhs12795_13219-141H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13219-141H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_02hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin02hr30minBiolRep3_CNhs12795_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13219-141H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF471DVK ENCSR438USP Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours DNase peak 4 3171 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/63af576f-d609-4762-a4e7-5abbdd4a4840/ENCFF471DVK.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438USP Peak\ track wgEncodeReg4Epigenetics_ENCFF471DVK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF046TEG ENCSR497JLX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 ENCSR497JLX signal 2 3171 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/647a758b-ca87-4ef8-8404-cc264c5ea0b6/ENCFF046TEG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 ENCSR497JLX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR497JLX Signal\ track wgEncodeReg4TfChip_ENCFF046TEG\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_ctss_fwd Tc:K562ToHemin_03hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_forward 0 3171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep1.CNhs12466.13088-140C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13088-140C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_tpm_fwd Tc:K562ToHemin_03hr00minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_forward 1 3171 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep1.CNhs12466.13088-140C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13088-140C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr00minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF751MKF ENCSR438USP Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours DNase signal 2 3172 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f15c02fc-9703-446a-bdc1-f495022a0af5/ENCFF751MKF.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR438USP Signal\ track wgEncodeReg4Epigenetics_ENCFF751MKF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF898FKC ENCSR497VFH Peak bigBed 5 K562 ZNF639 peaks 4 3172 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/8078c03f-fcec-427a-a7e8-714b5aa46f65/ENCFF898FKC.bigBed\ labelFields none\ longLabel K562 ZNF639 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR497VFH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF898FKC\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_ctss_rev Tc:K562ToHemin_03hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_reverse 0 3172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep1.CNhs12466.13088-140C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13088-140C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_tpm_rev Tc:K562ToHemin_03hr00minBr1- bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_reverse 1 3172 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep1.CNhs12466.13088-140C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep1_CNhs12466_13088-140C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13088-140C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr00minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep1_CNhs12466_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13088-140C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF238IKD ENCSR439TZT Peak bigBed 5 Heart right ventricle tissue male adult 66 years ATAC peak 4 3173 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/8b7046de-4d3d-44e0-81cb-bb82defa3300/ENCFF238IKD.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 66 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR439TZT Peak\ track wgEncodeReg4Epigenetics_ENCFF238IKD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF236EGW ENCSR497VFH Signal bigWig K562 ZNF639 ENCSR497VFH signal 2 3173 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/ef7b5890-eb4b-4772-9fcc-7d095f1d1dd8/ENCFF236EGW.bigWig\ color 254,75,173\ longLabel K562 ZNF639 ENCSR497VFH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR497VFH Signal\ track wgEncodeReg4TfChip_ENCFF236EGW\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_ctss_fwd Tc:K562ToHemin_03hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_forward 0 3173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep2.CNhs12694.13154-141A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13154-141A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_tpm_fwd Tc:K562ToHemin_03hr00minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_forward 1 3173 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep2.CNhs12694.13154-141A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13154-141A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr00minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF808EZU ENCSR439TZT Signal bigWig Heart right ventricle tissue male adult 66 years ATAC signal 2 3174 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/4d9e6949-8f92-4d43-b32d-610eefc5800e/ENCFF808EZU.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 66 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR439TZT Signal\ track wgEncodeReg4Epigenetics_ENCFF808EZU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF925PQA ENCSR498TWD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAF1 MAF1 peaks 4 3174 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5e5fead1-27b1-432e-9b8b-5193a29410f3/ENCFF925PQA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAF1 MAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR498TWD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF925PQA\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_ctss_rev Tc:K562ToHemin_03hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_reverse 0 3174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep2.CNhs12694.13154-141A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13154-141A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_tpm_rev Tc:K562ToHemin_03hr00minBr2- bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_reverse 1 3174 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep2.CNhs12694.13154-141A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep2_CNhs12694_13154-141A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13154-141A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr00minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep2_CNhs12694_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13154-141A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF410XJD ENCSR439XYT Peak bigBed 5 Activated T-cell male adult 38 years H3K4me3 peak 4 3175 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/27/ca5b6d09-d89f-4fc2-b700-3e5765098225/ENCFF410XJD.bigBed\ color 255,0,0\ longLabel Activated T-cell male adult 38 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR439XYT Peak\ track wgEncodeReg4Epigenetics_ENCFF410XJD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF545CDZ ENCSR498TWD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAF1 MAF1 ENCSR498TWD signal 2 3175 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/fad95023-6464-4a77-8175-0c4860c5f409/ENCFF545CDZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAF1 MAF1 ENCSR498TWD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR498TWD Signal\ track wgEncodeReg4TfChip_ENCFF545CDZ\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_ctss_fwd Tc:K562ToHemin_03hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_forward 0 3175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep3.CNhs12796.13220-141H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13220-141H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_tpm_fwd Tc:K562ToHemin_03hr00minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_forward 1 3175 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep3.CNhs12796.13220-141H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13220-141H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr00minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF940OQY ENCSR439XYT Signal bigWig Activated T-cell male adult 38 years H3K4me3 signal 2 3176 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/18b8d476-bea1-480b-9638-2c949b2ced30/ENCFF940OQY.bigWig\ color 255,0,0\ longLabel Activated T-cell male adult 38 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR439XYT Signal\ track wgEncodeReg4Epigenetics_ENCFF940OQY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF582XUA ENCSR500WXT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARA RARA peaks 4 3176 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/609226f4-08c3-4cc9-8332-29cfc6f70f0f/ENCFF582XUA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARA RARA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR500WXT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF582XUA\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_ctss_rev Tc:K562ToHemin_03hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_reverse 0 3176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep3.CNhs12796.13220-141H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13220-141H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_tpm_rev Tc:K562ToHemin_03hr00minBr3- bigWig K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_reverse 1 3176 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr00min%2c%20biol_rep3.CNhs12796.13220-141H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr00min, biol_rep3_CNhs12796_13220-141H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13220-141H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr00minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr00minBiolRep3_CNhs12796_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13220-141H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF049THN ENCSR440BPA Peak bigBed 5 Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 87 years DNase peak 4 3177 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/38e3cea8-3c5f-4a03-8be2-f7ffcc8931e9/ENCFF049THN.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440BPA Peak\ track wgEncodeReg4Epigenetics_ENCFF049THN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF445RZD ENCSR500WXT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARA RARA ENCSR500WXT signal 2 3177 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/2dd0f386-8de3-4563-bcf2-f28a08709487/ENCFF445RZD.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARA RARA ENCSR500WXT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR500WXT Signal\ track wgEncodeReg4TfChip_ENCFF445RZD\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_ctss_fwd Tc:K562ToHemin_03hr30minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_forward 0 3177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep1.CNhs12467.13089-140C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13089-140C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_tpm_fwd Tc:K562ToHemin_03hr30minBr1+ bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_forward 1 3177 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep1.CNhs12467.13089-140C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13089-140C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr30minBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF999YON ENCSR440BPA Signal bigWig Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 87 years DNase signal 2 3178 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/cd0672ce-706d-4dba-a88f-0f254ad68c99/ENCFF999YON.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440BPA Signal\ track wgEncodeReg4Epigenetics_ENCFF999YON\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF749DPM ENCSR501DKS Peak bigBed 5 GM12878 TCF7 peaks 4 3178 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/34a1efba-f1a9-46d4-ba43-f7bafc21c737/ENCFF749DPM.bigBed\ labelFields none\ longLabel GM12878 TCF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR501DKS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF749DPM\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_ctss_rev Tc:K562ToHemin_03hr30minBr1- bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_reverse 0 3178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep1.CNhs12467.13089-140C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13089-140C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_tpm_rev Tc:K562ToHemin_03hr30minBr1- bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_reverse 1 3178 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep1.CNhs12467.13089-140C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep1_CNhs12467_13089-140C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13089-140C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr30minBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep1_CNhs12467_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13089-140C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF343GGW ENCSR440FZS Peak bigBed 5 Muscle of trunk tissue female embryo 113 days DNase peak 4 3179 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/beae1dcf-d6cf-4fb2-8e0e-bd759bc5e1c0/ENCFF343GGW.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of trunk tissue female embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440FZS Peak\ track wgEncodeReg4Epigenetics_ENCFF343GGW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF331VPZ ENCSR502GAX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652 ZNF652 peaks 4 3179 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ca8412db-64b8-4280-b482-e3188f25868f/ENCFF331VPZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652 ZNF652 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502GAX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF331VPZ\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_ctss_fwd Tc:K562ToHemin_03hr30minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_forward 0 3179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep2.CNhs12695.13155-141A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13155-141A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_tpm_fwd Tc:K562ToHemin_03hr30minBr2+ bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_forward 1 3179 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep2.CNhs12695.13155-141A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13155-141A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr30minBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF959ITI ENCSR440FZS Signal bigWig Muscle of trunk tissue female embryo 113 days DNase signal 2 3180 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/7b59f0e7-f4ed-44da-af19-37e9f2a94380/ENCFF959ITI.bigWig\ color 6,218,147\ longLabel Muscle of trunk tissue female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440FZS Signal\ track wgEncodeReg4Epigenetics_ENCFF959ITI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF842UYH ENCSR502GAX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652 ZNF652 ENCSR502GAX signal 2 3180 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/715c9fb8-1399-4f23-85f3-bc421ba39b18/ENCFF842UYH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652 ZNF652 ENCSR502GAX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502GAX Signal\ track wgEncodeReg4TfChip_ENCFF842UYH\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_ctss_rev Tc:K562ToHemin_03hr30minBr2- bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_reverse 0 3180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep2.CNhs12695.13155-141A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13155-141A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_tpm_rev Tc:K562ToHemin_03hr30minBr2- bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_reverse 1 3180 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep2.CNhs12695.13155-141A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep2_CNhs12695_13155-141A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13155-141A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr30minBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep2_CNhs12695_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13155-141A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF598NQN ENCSR440PMP Peak bigBed 5 Peyer's patch tissue male adult 37 years H3K27ac peak 4 3181 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f1ca5c6c-a5e7-40de-a458-e6dc9ccade83/ENCFF598NQN.bigBed\ color 181,145,0\ longLabel Peyer's patch tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440PMP Peak\ track wgEncodeReg4Epigenetics_ENCFF598NQN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF241QRH ENCSR502KPJ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF843 ZNF843 peaks 4 3181 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/daa8dfcf-b9fd-4a49-8d39-75881841ffc0/ENCFF241QRH.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF843 ZNF843 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502KPJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF241QRH\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_ctss_fwd Tc:K562ToHemin_03hr30minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_forward 0 3181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep3.CNhs12797.13221-141H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13221-141H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_tpm_fwd Tc:K562ToHemin_03hr30minBr3+ bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_forward 1 3181 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep3.CNhs12797.13221-141H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13221-141H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr30minBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF249ILQ ENCSR440PMP Signal bigWig Peyer's patch tissue male adult 37 years H3K27ac signal 2 3182 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/397a1e64-7cca-4f53-b3f4-9b15421218d0/ENCFF249ILQ.bigWig\ color 181,145,0\ longLabel Peyer's patch tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440PMP Signal\ track wgEncodeReg4Epigenetics_ENCFF249ILQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF872VOH ENCSR502KPJ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF843 ZNF843 ENCSR502KPJ signal 2 3182 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/dad8a661-672d-4060-9f12-532fccd87e4f/ENCFF872VOH.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF843 ZNF843 ENCSR502KPJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502KPJ Signal\ track wgEncodeReg4TfChip_ENCFF872VOH\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_ctss_rev Tc:K562ToHemin_03hr30minBr3- bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_reverse 0 3182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep3.CNhs12797.13221-141H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13221-141H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_tpm_rev Tc:K562ToHemin_03hr30minBr3- bigWig K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_reverse 1 3182 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2003hr30min%2c%20biol_rep3.CNhs12797.13221-141H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 03hr30min, biol_rep3_CNhs12797_13221-141H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13221-141H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_03hr30minBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin03hr30minBiolRep3_CNhs12797_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13221-141H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF472HIK ENCSR440QMR Peak bigBed 5 IPS DF 19.7 DNase peak 4 3183 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/18f31d27-c438-4e83-af82-48efbcdde512/ENCFF472HIK.bigBed\ color 6,218,147\ labelFields none\ longLabel IPS DF 19.7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440QMR Peak\ track wgEncodeReg4Epigenetics_ENCFF472HIK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF305BNP ENCSR502NRF Peak bigBed 5 MCF-7 ELF1 peaks 4 3183 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/21f078bb-2e9a-406d-8c84-829a664c1a43/ENCFF305BNP.bigBed\ labelFields none\ longLabel MCF-7 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502NRF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF305BNP\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_ctss_fwd Tc:K562ToHemin_04hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_forward 0 3183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep1.CNhs12468.13090-140C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13090-140C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_tpm_fwd Tc:K562ToHemin_04hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_forward 1 3183 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep1.CNhs12468.13090-140C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13090-140C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF727CHU ENCSR440QMR Signal bigWig IPS DF 19.7 DNase signal 2 3184 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/6dfbd448-da70-467f-a449-cf3a7813c817/ENCFF727CHU.bigWig\ color 6,218,147\ longLabel IPS DF 19.7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440QMR Signal\ track wgEncodeReg4Epigenetics_ENCFF727CHU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF048UJA ENCSR502NRF Signal bigWig MCF-7 ELF1 ENCSR502NRF signal 2 3184 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/edfdb851-9647-4be0-9c5e-dd2d49f6d8e6/ENCFF048UJA.bigWig\ color 65,171,173\ longLabel MCF-7 ELF1 ENCSR502NRF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502NRF Signal\ track wgEncodeReg4TfChip_ENCFF048UJA\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_ctss_rev Tc:K562ToHemin_04hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_reverse 0 3184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep1.CNhs12468.13090-140C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13090-140C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_tpm_rev Tc:K562ToHemin_04hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_reverse 1 3184 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep1.CNhs12468.13090-140C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep1_CNhs12468_13090-140C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13090-140C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep1_CNhs12468_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13090-140C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF098VRY ENCSR440ZMH Peak bigBed 5 Naive B cell H3K27ac peak 4 3185 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/fb5ff8de-d8c0-46f0-b501-3906dc1acfa8/ENCFF098VRY.bigBed\ color 181,145,0\ longLabel Naive B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440ZMH Peak\ track wgEncodeReg4Epigenetics_ENCFF098VRY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF457KVR ENCSR502OEK Peak bigBed 5 K562 ELF1 peaks 4 3185 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/4c19a65b-f17b-4298-bf34-e9372aecdd88/ENCFF457KVR.bigBed\ labelFields none\ longLabel K562 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502OEK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF457KVR\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_fwd Tc:K562ToHemin_04hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward 0 3185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_fwd Tc:K562ToHemin_04hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward 1 3185 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF464STM ENCSR440ZMH Signal bigWig Naive B cell H3K27ac signal 2 3186 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d5145d45-d268-420c-bd2e-08ab5536560f/ENCFF464STM.bigWig\ color 181,145,0\ longLabel Naive B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR440ZMH Signal\ track wgEncodeReg4Epigenetics_ENCFF464STM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF235IXK ENCSR502OEK Signal bigWig K562 ELF1 ENCSR502OEK signal 2 3186 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/8f17032c-5e70-4b31-9c29-3e52bf09ef43/ENCFF235IXK.bigWig\ color 254,75,173\ longLabel K562 ELF1 ENCSR502OEK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502OEK Signal\ track wgEncodeReg4TfChip_ENCFF235IXK\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_rev Tc:K562ToHemin_04hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse 0 3186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_rev Tc:K562ToHemin_04hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse 1 3186 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep2.CNhs12696.13156-141A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep2_CNhs12696_13156-141A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13156-141A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep2_CNhs12696_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13156-141A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF830CRR ENCSR441BDP Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 ATAC signal 2 3187 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/ce87b85c-7b5c-40f9-92f3-44c3e880743d/ENCFF830CRR.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441BDP Signal\ track wgEncodeReg4Epigenetics_ENCFF830CRR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF099VAH ENCSR502YME Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLI4 GLI4 peaks 4 3187 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/3ec7e691-02aa-42f6-bcea-bf142606e893/ENCFF099VAH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLI4 GLI4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502YME Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF099VAH\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_fwd Tc:K562ToHemin_04hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward 0 3187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_fwd Tc:K562ToHemin_04hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward 1 3187 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF478IQY ENCSR441JWF Peak bigBed 5 PC-9 H3K4me3 peak 4 3188 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/e8469773-8e03-49c1-95c5-a70ef4ec6302/ENCFF478IQY.bigBed\ color 255,0,0\ longLabel PC-9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441JWF Peak\ track wgEncodeReg4Epigenetics_ENCFF478IQY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF848IQI ENCSR502YME Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLI4 GLI4 ENCSR502YME signal 2 3188 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/b32d9ee2-3da1-4715-8546-f271f82853f4/ENCFF848IQI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLI4 GLI4 ENCSR502YME signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR502YME Signal\ track wgEncodeReg4TfChip_ENCFF848IQI\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_rev Tc:K562ToHemin_04hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse 0 3188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_rev Tc:K562ToHemin_04hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse 1 3188 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2004hr%2c%20biol_rep3.CNhs12798.13222-141H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 04hr, biol_rep3_CNhs12798_13222-141H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13222-141H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_04hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin04hrBiolRep3_CNhs12798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13222-141H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF465MDM ENCSR441JWF Signal bigWig PC-9 H3K4me3 signal 2 3189 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/05/e027759f-a129-41c3-b0e1-f76446e482e4/ENCFF465MDM.bigWig\ color 255,0,0\ longLabel PC-9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441JWF Signal\ track wgEncodeReg4Epigenetics_ENCFF465MDM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF457TCC ENCSR503DPC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF513 ZNF513 peaks 4 3189 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f451ffc5-5d6b-43c9-88a3-7308f2a87f05/ENCFF457TCC.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF513 ZNF513 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR503DPC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF457TCC\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_fwd Tc:K562ToHemin_06hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward 0 3189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_fwd Tc:K562ToHemin_06hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward 1 3189 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF172RRR ENCSR441MMO Peak bigBed 5 Right lung tissue female embryo 110 days DNase peak 4 3190 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/2e435b4c-50ed-4e66-87d4-92d1330fd2dc/ENCFF172RRR.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lung tissue female embryo 110 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441MMO Peak\ track wgEncodeReg4Epigenetics_ENCFF172RRR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF544SID ENCSR503DPC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF513 ZNF513 ENCSR503DPC signal 2 3190 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/48840230-2489-4d1c-8198-941b8b4cc503/ENCFF544SID.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF513 ZNF513 ENCSR503DPC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR503DPC Signal\ track wgEncodeReg4TfChip_ENCFF544SID\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_rev Tc:K562ToHemin_06hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse 0 3190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_rev Tc:K562ToHemin_06hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse 1 3190 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep1.CNhs12469.13091-140C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep1_CNhs12469_13091-140C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13091-140C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep1_CNhs12469_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13091-140C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF520RDT ENCSR441MMO Signal bigWig Right lung tissue female embryo 110 days DNase signal 2 3191 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/d5a0f63c-ab98-4a74-b80a-c07d0b7eda75/ENCFF520RDT.bigWig\ color 6,218,147\ longLabel Right lung tissue female embryo 110 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441MMO Signal\ track wgEncodeReg4Epigenetics_ENCFF520RDT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF324IZY ENCSR503GVO Peak bigBed 5 HCT116 ZFX peaks 4 3191 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c69efc0b-acbc-4ade-b016-58f16aef172d/ENCFF324IZY.bigBed\ labelFields none\ longLabel HCT116 ZFX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR503GVO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF324IZY\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_fwd Tc:K562ToHemin_06hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward 0 3191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_fwd Tc:K562ToHemin_06hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward 1 3191 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF344YFU ENCSR441OGH Signal bigWig Left lung tissue male embryo 87 days DNase signal 2 3192 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/5296fafc-1646-4315-830f-498a0faf785a/ENCFF344YFU.bigWig\ color 6,218,147\ longLabel Left lung tissue male embryo 87 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441OGH Signal\ track wgEncodeReg4Epigenetics_ENCFF344YFU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF102UZB ENCSR503GVO Signal bigWig HCT116 ZFX ENCSR503GVO signal 2 3192 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/088551f1-c531-43fb-b3f3-ecc9a8a7f464/ENCFF102UZB.bigWig\ color 86,86,36\ longLabel HCT116 ZFX ENCSR503GVO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR503GVO Signal\ track wgEncodeReg4TfChip_ENCFF102UZB\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_rev Tc:K562ToHemin_06hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse 0 3192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_rev Tc:K562ToHemin_06hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse 1 3192 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep2.CNhs12697.13157-141A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep2_CNhs12697_13157-141A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13157-141A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep2_CNhs12697_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13157-141A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF770PLG ENCSR441SAT Peak bigBed 5 Mesendoderm originated from H1 H3K4me3 peak 4 3193 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/11/9296b907-7da2-4131-92ab-53a4ccdb9a38/ENCFF770PLG.bigBed\ color 255,0,0\ longLabel Mesendoderm originated from H1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441SAT Peak\ track wgEncodeReg4Epigenetics_ENCFF770PLG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF861XIL ENCSR503VTG Peak bigBed 5 MCF-7 ZNF24 peaks 4 3193 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/76f07139-62cb-4ad5-87e6-e5fcc9c57d60/ENCFF861XIL.bigBed\ labelFields none\ longLabel MCF-7 ZNF24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR503VTG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF861XIL\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_fwd Tc:K562ToHemin_06hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward 0 3193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_fwd Tc:K562ToHemin_06hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward 1 3193 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF832ZCY ENCSR441SAT Signal bigWig Mesendoderm originated from H1 H3K4me3 signal 2 3194 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/11/cfd7f7fb-1c9a-41ec-91b2-5948dfefe9ce/ENCFF832ZCY.bigWig\ color 255,0,0\ longLabel Mesendoderm originated from H1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR441SAT Signal\ track wgEncodeReg4Epigenetics_ENCFF832ZCY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF125EBG ENCSR503VTG Signal bigWig MCF-7 ZNF24 ENCSR503VTG signal 2 3194 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/1163dcb3-9b12-4877-bc54-0a70c0d858dc/ENCFF125EBG.bigWig\ color 65,171,173\ longLabel MCF-7 ZNF24 ENCSR503VTG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR503VTG Signal\ track wgEncodeReg4TfChip_ENCFF125EBG\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_rev Tc:K562ToHemin_06hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse 0 3194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_06hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_rev Tc:K562ToHemin_06hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse 1 3194 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2006hr%2c%20biol_rep3.CNhs12799.13223-141I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 06hr, biol_rep3_CNhs12799_13223-141I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13223-141I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_06hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin06hrBiolRep3_CNhs12799_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13223-141I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF523ZSW ENCSR442DWQ Peak bigBed 5 K562 treated with 0.5 μM MB-3 for 24 hours ATAC peak 4 3195 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/8dfcf257-455e-4041-9a2e-18352163b169/ENCFF523ZSW.bigBed\ color 2,199,185\ longLabel K562 treated with 0.5 μM MB-3 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442DWQ Peak\ track wgEncodeReg4Epigenetics_ENCFF523ZSW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF636WIC ENCSR504VDV Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF654 ZNF654 peaks 4 3195 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f3074f58-4015-4451-a33b-19024e0e0901/ENCFF636WIC.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF654 ZNF654 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR504VDV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF636WIC\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_fwd Tc:K562ToHemin_12hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward 0 3195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_fwd Tc:K562ToHemin_12hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward 1 3195 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF366IJY ENCSR442DWQ Signal bigWig K562 treated with 0.5 μM MB-3 for 24 hours ATAC signal 2 3196 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/7697820e-95ce-4776-a3c5-5b3341c33fba/ENCFF366IJY.bigWig\ color 2,199,185\ longLabel K562 treated with 0.5 μM MB-3 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442DWQ Signal\ track wgEncodeReg4Epigenetics_ENCFF366IJY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF866WHQ ENCSR504VDV Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF654 ZNF654 ENCSR504VDV signal 2 3196 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/541b84c0-743f-49cc-9f53-63f49e6b9671/ENCFF866WHQ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF654 ZNF654 ENCSR504VDV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR504VDV Signal\ track wgEncodeReg4TfChip_ENCFF866WHQ\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_rev Tc:K562ToHemin_12hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse 0 3196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_rev Tc:K562ToHemin_12hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse 1 3196 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep1.CNhs12470.13092-140C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep1_CNhs12470_13092-140C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13092-140C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep1_CNhs12470_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13092-140C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF561DSL ENCSR442GKD Signal bigWig T-cell male adult 34 years DNase signal 2 3197 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/5b5e9ea2-5e57-4498-b82e-e5417fa64e3e/ENCFF561DSL.bigWig\ color 6,218,147\ longLabel T-cell male adult 34 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442GKD Signal\ track wgEncodeReg4Epigenetics_ENCFF561DSL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF408KTI ENCSR505DVB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3 ZMYM3 peaks 4 3197 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/4ee82414-33da-482c-9421-99b968b6f40e/ENCFF408KTI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3 ZMYM3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505DVB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF408KTI\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_fwd Tc:K562ToHemin_12hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward 0 3197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_fwd Tc:K562ToHemin_12hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward 1 3197 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF368TRF ENCSR442OAV Peak bigBed 5 GM18517 ATAC peak 4 3198 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/c97c6847-138e-4430-9f1a-f9e3328126ff/ENCFF368TRF.bigBed\ color 2,199,185\ longLabel GM18517 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442OAV Peak\ track wgEncodeReg4Epigenetics_ENCFF368TRF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF827TAE ENCSR505DVB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3 ZMYM3 ENCSR505DVB signal 2 3198 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/c1f6f5ee-5cd8-43a0-aa0a-314ba57c069c/ENCFF827TAE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM3 ZMYM3 ENCSR505DVB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505DVB Signal\ track wgEncodeReg4TfChip_ENCFF827TAE\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_rev Tc:K562ToHemin_12hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse 0 3198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_rev Tc:K562ToHemin_12hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse 1 3198 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep2.CNhs12698.13158-141A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep2_CNhs12698_13158-141A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13158-141A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep2_CNhs12698_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13158-141A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF549PEF ENCSR442OAV Signal bigWig GM18517 ATAC signal 2 3199 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e93e5a37-2132-4661-bdf1-b30b91e1217b/ENCFF549PEF.bigWig\ color 2,199,185\ longLabel GM18517 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442OAV Signal\ track wgEncodeReg4Epigenetics_ENCFF549PEF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF721ZAA ENCSR505LJT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP37 ZFP37 peaks 4 3199 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/7a901a94-2670-4781-8107-8dafa5c3bd7a/ENCFF721ZAA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP37 ZFP37 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505LJT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF721ZAA\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_fwd Tc:K562ToHemin_12hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward 0 3199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_fwd Tc:K562ToHemin_12hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward 1 3199 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF788HTM ENCSR442OSV Peak bigBed 5 Immature natural killer cell H3K27ac peak 4 3200 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a12f1d2c-af7e-49a7-8d2a-4010e1c9a55e/ENCFF788HTM.bigBed\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442OSV Peak\ track wgEncodeReg4Epigenetics_ENCFF788HTM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF567LTP ENCSR505LJT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP37 ZFP37 ENCSR505LJT signal 2 3200 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/5a828cff-c7bd-4710-a094-77f3138c02bb/ENCFF567LTP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP37 ZFP37 ENCSR505LJT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505LJT Signal\ track wgEncodeReg4TfChip_ENCFF567LTP\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_rev Tc:K562ToHemin_12hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse 0 3200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_12hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_rev Tc:K562ToHemin_12hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse 1 3200 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2012hr%2c%20biol_rep3.CNhs12800.13224-141I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 12hr, biol_rep3_CNhs12800_13224-141I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13224-141I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_12hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin12hrBiolRep3_CNhs12800_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13224-141I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF028QQB ENCSR442OSV Signal bigWig Immature natural killer cell H3K27ac signal 2 3201 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d457b1bb-bbf0-4d18-8806-f3b4f18e3ad8/ENCFF028QQB.bigWig\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442OSV Signal\ track wgEncodeReg4Epigenetics_ENCFF028QQB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF022KFI ENCSR505RTK Peak bigBed 5 Heart right ventricle tissue female adult (46 years) CTCF peaks 4 3201 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7be8b94d-234d-48bd-bafb-a9eda2c33e2d/ENCFF022KFI.bigBed\ labelFields none\ longLabel Heart right ventricle tissue female adult (46 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505RTK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF022KFI\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_fwd Tc:K562ToHemin_24hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward 0 3201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_fwd Tc:K562ToHemin_24hrBr1+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward 1 3201 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF496GPO ENCSR442ZOI Peak bigBed 5 Hepatocyte originated from H9 H3K4me3 peak 4 3202 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/62df17ce-7b58-48bb-bad3-fc87fee55f0e/ENCFF496GPO.bigBed\ color 255,0,0\ longLabel Hepatocyte originated from H9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442ZOI Peak\ track wgEncodeReg4Epigenetics_ENCFF496GPO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF803TUM ENCSR505RTK Signal bigWig Heart right ventricle tissue female adult (46 years) CTCF ENCSR505RTK signal 2 3202 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/a3d9ee11-c05f-4fcd-83e4-f63a005e86b6/ENCFF803TUM.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (46 years) CTCF ENCSR505RTK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505RTK Signal\ track wgEncodeReg4TfChip_ENCFF803TUM\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_rev Tc:K562ToHemin_24hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse 0 3202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_rev Tc:K562ToHemin_24hrBr1- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse 1 3202 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep1.CNhs12471.13093-140C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep1_CNhs12471_13093-140C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13093-140C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep1_CNhs12471_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13093-140C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF137IUT ENCSR442ZOI Signal bigWig Hepatocyte originated from H9 H3K4me3 signal 2 3203 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d7b8316d-02f1-444f-a1f1-e13d1fd92d52/ENCFF137IUT.bigWig\ color 255,0,0\ longLabel Hepatocyte originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR442ZOI Signal\ track wgEncodeReg4Epigenetics_ENCFF137IUT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF038JAL ENCSR505UNL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333 ZNF333 peaks 4 3203 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/10b58193-ef73-4d92-8a55-164c1c540214/ENCFF038JAL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333 ZNF333 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505UNL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF038JAL\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_fwd Tc:K562ToHemin_24hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward 0 3203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_fwd Tc:K562ToHemin_24hrBr2+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward 1 3203 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF876KGY ENCSR443JIO Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K4me3 peak 4 3204 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/115cb670-366a-4cef-9686-b8bce5616e55/ENCFF876KGY.bigBed\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443JIO Peak\ track wgEncodeReg4Epigenetics_ENCFF876KGY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF635QKG ENCSR505UNL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333 ZNF333 ENCSR505UNL signal 2 3204 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/28c3a660-9a80-48d6-b949-a727fb244138/ENCFF635QKG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF333 ZNF333 ENCSR505UNL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505UNL Signal\ track wgEncodeReg4TfChip_ENCFF635QKG\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_rev Tc:K562ToHemin_24hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse 0 3204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_rev Tc:K562ToHemin_24hrBr2- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse 1 3204 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep2.CNhs12699.13159-141A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep2_CNhs12699_13159-141A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13159-141A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep2_CNhs12699_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13159-141A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF220GPW ENCSR443JIO Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K4me3 signal 2 3205 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/1ffae3eb-e3cd-4c64-b46b-3466c836428e/ENCFF220GPW.bigWig\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 86 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443JIO Signal\ track wgEncodeReg4Epigenetics_ENCFF220GPW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF877DRR ENCSR505ZGX Peak bigBed 5 Thyroid gland tissue male adult (37 years) CTCF peaks 4 3205 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/8a1d6830-0c6b-4625-900b-963f21a3f379/ENCFF877DRR.bigBed\ labelFields none\ longLabel Thyroid gland tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505ZGX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF877DRR\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_fwd Tc:K562ToHemin_24hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward 0 3205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_fwd Tc:K562ToHemin_24hrBr3+ bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward 1 3205 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF277CZQ ENCSR443NWG Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 3206 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/96a121d8-0cc1-47d4-9c51-ea984bc11ef6/ENCFF277CZQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443NWG Peak\ track wgEncodeReg4Epigenetics_ENCFF277CZQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF874CKO ENCSR505ZGX Signal bigWig Thyroid gland tissue male adult (37 years) CTCF ENCSR505ZGX signal 2 3206 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9a00c793-076f-452b-a290-a18522064985/ENCFF874CKO.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue male adult (37 years) CTCF ENCSR505ZGX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR505ZGX Signal\ track wgEncodeReg4TfChip_ENCFF874CKO\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_rev Tc:K562ToHemin_24hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse 0 3206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_24hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_rev Tc:K562ToHemin_24hrBr3- bigWig K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse 1 3206 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%2024hr%2c%20biol_rep3.CNhs12801.13225-141I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, 24hr, biol_rep3_CNhs12801_13225-141I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13225-141I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_24hrBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHemin24hrBiolRep3_CNhs12801_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13225-141I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF548SBE ENCSR443NWG Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 3207 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/5f1f40ef-f291-473d-b7b2-ae3422a77b11/ENCFF548SBE.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443NWG Signal\ track wgEncodeReg4Epigenetics_ENCFF548SBE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF115CTZ ENCSR506KWJ Peak bigBed 5 K562 XRCC5 peaks 4 3207 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1824d464-ce01-4deb-a13f-ba4a4f73663b/ENCFF115CTZ.bigBed\ labelFields none\ longLabel K562 XRCC5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR506KWJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF115CTZ\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_fwd Tc:K562ToHemin_Day02Br1+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward 0 3207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_fwd Tc:K562ToHemin_Day02Br1+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward 1 3207 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF593QYK ENCSR443SLY Peak bigBed 5 Peripheral blood mononuclear cell male adult 27 years H3K4me3 peak 4 3208 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e0fecb66-256b-4007-8371-a6c58dcbcb9b/ENCFF593QYK.bigBed\ color 255,0,0\ longLabel Peripheral blood mononuclear cell male adult 27 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443SLY Peak\ track wgEncodeReg4Epigenetics_ENCFF593QYK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF544EVA ENCSR506KWJ Signal bigWig K562 XRCC5 ENCSR506KWJ signal 2 3208 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/652c6580-b897-4aa0-b886-2e0a3875164c/ENCFF544EVA.bigWig\ color 254,75,173\ longLabel K562 XRCC5 ENCSR506KWJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR506KWJ Signal\ track wgEncodeReg4TfChip_ENCFF544EVA\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_rev Tc:K562ToHemin_Day02Br1- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse 0 3208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_rev Tc:K562ToHemin_Day02Br1- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse 1 3208 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep1.CNhs12472.13094-140C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep1_CNhs12472_13094-140C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13094-140C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep1_CNhs12472_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13094-140C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF755OEB ENCSR443SLY Signal bigWig Peripheral blood mononuclear cell male adult 27 years H3K4me3 signal 2 3209 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/b2e0f16f-2b0f-4703-8310-bf466c3b757d/ENCFF755OEB.bigWig\ color 255,0,0\ longLabel Peripheral blood mononuclear cell male adult 27 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443SLY Signal\ track wgEncodeReg4Epigenetics_ENCFF755OEB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF371JMA ENCSR506SSQ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354C ZNF354C peaks 4 3209 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/3180dbe4-c180-4dbe-b9de-c482af9949a3/ENCFF371JMA.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354C ZNF354C peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR506SSQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF371JMA\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_fwd Tc:K562ToHemin_Day02Br2+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward 0 3209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_fwd Tc:K562ToHemin_Day02Br2+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward 1 3209 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF210HPC ENCSR443UYU Peak bigBed 5 Coronary artery tissue female adult 53 years H3K27ac peak 4 3210 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/cff017b0-7a48-43a1-9f7e-c5ef5d745f0a/ENCFF210HPC.bigBed\ color 181,145,0\ longLabel Coronary artery tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443UYU Peak\ track wgEncodeReg4Epigenetics_ENCFF210HPC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF424MFP ENCSR506SSQ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354C ZNF354C ENCSR506SSQ signal 2 3210 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/d9bda1c1-fd5f-4b02-8a23-0e83f74607df/ENCFF424MFP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354C ZNF354C ENCSR506SSQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR506SSQ Signal\ track wgEncodeReg4TfChip_ENCFF424MFP\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_rev Tc:K562ToHemin_Day02Br2- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse 0 3210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_rev Tc:K562ToHemin_Day02Br2- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse 1 3210 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep2.CNhs12700.13160-141B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep2_CNhs12700_13160-141B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13160-141B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep2_CNhs12700_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13160-141B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF130NUG ENCSR443UYU Signal bigWig Coronary artery tissue female adult 53 years H3K27ac signal 2 3211 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/12776376-3921-4dc8-ad9d-b8cbaabf4ef0/ENCFF130NUG.bigWig\ color 181,145,0\ longLabel Coronary artery tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443UYU Signal\ track wgEncodeReg4Epigenetics_ENCFF130NUG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF370MHZ ENCSR507BWM Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GLIS3 treated with 6 μM all-trans-retinoic acid for 48 hours GLIS3 peaks 4 3211 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/59d7810f-8a2b-48d9-8bfd-68a1cda458a3/ENCFF370MHZ.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GLIS3 treated with 6 μM all-trans-retinoic acid for 48 hours GLIS3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR507BWM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF370MHZ\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_fwd Tc:K562ToHemin_Day02Br3+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward 0 3211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_fwd Tc:K562ToHemin_Day02Br3+ bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward 1 3211 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF534NGE ENCSR443YJP Peak bigBed 5 MG63 DNase peak 4 3212 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/b6a4fd38-9894-4f70-adad-e1c6c5bbf81c/ENCFF534NGE.bigBed\ color 6,218,147\ labelFields none\ longLabel MG63 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443YJP Peak\ track wgEncodeReg4Epigenetics_ENCFF534NGE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF831NAK ENCSR507BWM Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GLIS3 treated with 6 μM all-trans-retinoic acid for 48 hours GLIS3 ENCSR507BWM signal 2 3212 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/007a64ff-8ff8-4d7d-ac34-1fac91a926d6/ENCFF831NAK.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GLIS3 treated with 6 μM all-trans-retinoic acid for 48 hours GLIS3 ENCSR507BWM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR507BWM Signal\ track wgEncodeReg4TfChip_ENCFF831NAK\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_rev Tc:K562ToHemin_Day02Br3- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse 0 3212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day02Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_rev Tc:K562ToHemin_Day02Br3- bigWig K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse 1 3212 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day02%2c%20biol_rep3.CNhs12802.13226-141I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day02, biol_rep3_CNhs12802_13226-141I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13226-141I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day02Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay02BiolRep3_CNhs12802_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13226-141I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF147AZB ENCSR443YJP Signal bigWig MG63 DNase signal 2 3213 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c2e592fe-cf05-4283-b652-cef2db17e2d2/ENCFF147AZB.bigWig\ color 6,218,147\ longLabel MG63 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR443YJP Signal\ track wgEncodeReg4Epigenetics_ENCFF147AZB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF851PFH ENCSR508DQA Peak bigBed 5 K562 FOXK2 peaks 4 3213 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/2c0911f4-5f06-4144-89b2-e67ddd261ce5/ENCFF851PFH.bigBed\ labelFields none\ longLabel K562 FOXK2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR508DQA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF851PFH\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_fwd Tc:K562ToHemin_Day03Br1+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward 0 3213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_fwd Tc:K562ToHemin_Day03Br1+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward 1 3213 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF623CEM ENCSR444VTC Peak bigBed 5 Large intestine tissue female embryo 105 days DNase peak 4 3214 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/c7731a40-1c1c-46b0-a129-3912b36d24fd/ENCFF623CEM.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR444VTC Peak\ track wgEncodeReg4Epigenetics_ENCFF623CEM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF461BWN ENCSR508DQA Signal bigWig K562 FOXK2 ENCSR508DQA signal 2 3214 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/2a24a7dd-0106-47e1-8f87-e60bd411cb80/ENCFF461BWN.bigWig\ color 254,75,173\ longLabel K562 FOXK2 ENCSR508DQA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR508DQA Signal\ track wgEncodeReg4TfChip_ENCFF461BWN\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_rev Tc:K562ToHemin_Day03Br1- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse 0 3214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_rev Tc:K562ToHemin_Day03Br1- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse 1 3214 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep1.CNhs12473.13095-140C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep1_CNhs12473_13095-140C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13095-140C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep1_CNhs12473_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13095-140C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF700ODC ENCSR444VTC Signal bigWig Large intestine tissue female embryo 105 days DNase signal 2 3215 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e192865a-a65a-4c91-abd0-7e16f2d3f244/ENCFF700ODC.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR444VTC Signal\ track wgEncodeReg4Epigenetics_ENCFF700ODC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF203WSD ENCSR508EEX Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF397 ZNF397 peaks 4 3215 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/279ce37e-bb74-49af-a2f9-5d4324edd15c/ENCFF203WSD.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF397 ZNF397 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR508EEX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF203WSD\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_fwd Tc:K562ToHemin_Day03Br2+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward 0 3215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_fwd Tc:K562ToHemin_Day03Br2+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward 1 3215 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF282ONV ENCSR445NJB Peak bigBed 5 Middle frontal area 46 tissue female adult 78 years CTCF peak 4 3216 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/a5fee8ef-c234-4abd-ae5b-1c0e8e6cfa66/ENCFF282ONV.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 78 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445NJB Peak\ track wgEncodeReg4Epigenetics_ENCFF282ONV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF131AOO ENCSR508EEX Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF397 ZNF397 ENCSR508EEX signal 2 3216 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/41d4fa48-6987-4692-8714-1df34db41752/ENCFF131AOO.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF397 ZNF397 ENCSR508EEX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR508EEX Signal\ track wgEncodeReg4TfChip_ENCFF131AOO\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_rev Tc:K562ToHemin_Day03Br2- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse 0 3216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_rev Tc:K562ToHemin_Day03Br2- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse 1 3216 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep2.CNhs12701.13161-141B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep2_CNhs12701_13161-141B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13161-141B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep2_CNhs12701_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13161-141B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF203LSD ENCSR445NJB Signal bigWig Middle frontal area 46 tissue female adult 78 years CTCF signal 2 3217 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/c2e63863-d2e3-4a32-8d24-ee2ec71ae233/ENCFF203LSD.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 78 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445NJB Signal\ track wgEncodeReg4Epigenetics_ENCFF203LSD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF207QHL ENCSR508LMH Peak bigBed 5 HepG2 ASH2L peaks 4 3217 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/16/38858b5d-8375-410c-9547-fa8e8a61545d/ENCFF207QHL.bigBed\ labelFields none\ longLabel HepG2 ASH2L peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR508LMH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF207QHL\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_fwd Tc:K562ToHemin_Day03Br3+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward 0 3217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_fwd Tc:K562ToHemin_Day03Br3+ bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward 1 3217 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF211USW ENCSR445QDZ Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years DNase peak 4 3218 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/253ad220-9b03-41af-826f-656db32175e7/ENCFF211USW.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445QDZ Peak\ track wgEncodeReg4Epigenetics_ENCFF211USW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF681AJV ENCSR509FWH Peak bigBed 5 GM12878 DPF2 peaks 4 3218 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4ea6de9b-ce40-41e3-be3f-c7b92a7d6f82/ENCFF681AJV.bigBed\ labelFields none\ longLabel GM12878 DPF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR509FWH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF681AJV\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_rev Tc:K562ToHemin_Day03Br3- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse 0 3218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_rev Tc:K562ToHemin_Day03Br3- bigWig K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse 1 3218 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day03%2c%20biol_rep3.CNhs12803.13227-141I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day03, biol_rep3_CNhs12803_13227-141I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13227-141I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day03Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay03BiolRep3_CNhs12803_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13227-141I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF811VKO ENCSR445QDZ Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years DNase signal 2 3219 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/94203381-9bd1-4b0c-8cd6-82b36d4d874f/ENCFF811VKO.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445QDZ Signal\ track wgEncodeReg4Epigenetics_ENCFF811VKO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF197LVJ ENCSR509FWH Signal bigWig GM12878 DPF2 ENCSR509FWH signal 2 3219 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/7f6178ff-4874-4f5d-a7a4-3031e3e2a722/ENCFF197LVJ.bigWig\ color 254,75,173\ longLabel GM12878 DPF2 ENCSR509FWH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR509FWH Signal\ track wgEncodeReg4TfChip_ENCFF197LVJ\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_fwd Tc:K562ToHemin_Day04Br1+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward 0 3219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_fwd Tc:K562ToHemin_Day04Br1+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward 1 3219 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF247NIO ENCSR445VYQ Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A ATAC peak 4 3220 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/287c7f8c-5b0a-4f29-94f8-a7c33996bb6a/ENCFF247NIO.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445VYQ Peak\ track wgEncodeReg4Epigenetics_ENCFF247NIO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF233UVH ENCSR510GKB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770 ZNF770 peaks 4 3220 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/6f397e04-e348-4825-9dec-b93b66a9e6e2/ENCFF233UVH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770 ZNF770 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR510GKB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF233UVH\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_rev Tc:K562ToHemin_Day04Br1- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse 0 3220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_rev Tc:K562ToHemin_Day04Br1- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse 1 3220 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep1.CNhs12474.13096-140C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep1_CNhs12474_13096-140C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13096-140C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep1_CNhs12474_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13096-140C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF758EEF ENCSR445VYQ Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A ATAC signal 2 3221 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/fe151779-41a0-46f5-9637-63a46ffb5074/ENCFF758EEF.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445VYQ Signal\ track wgEncodeReg4Epigenetics_ENCFF758EEF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF606RVI ENCSR510GKB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770 ZNF770 ENCSR510GKB signal 2 3221 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/65e28a18-0042-41bd-9830-2233fe5fe8b4/ENCFF606RVI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF770 ZNF770 ENCSR510GKB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR510GKB Signal\ track wgEncodeReg4TfChip_ENCFF606RVI\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_ctss_fwd Tc:K562ToHemin_Day04Br2+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward 0 3221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep2.CNhs12702.13162-141B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13162-141B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_tpm_fwd Tc:K562ToHemin_Day04Br2+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward 1 3221 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep2.CNhs12702.13162-141B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13162-141B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF315QPH ENCSR445XYW Peak bigBed 5 Right lung tissue female embryo 98 days DNase peak 4 3222 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/9f8e04ba-e3ca-4031-bd3f-019656dea194/ENCFF315QPH.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lung tissue female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445XYW Peak\ track wgEncodeReg4Epigenetics_ENCFF315QPH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF610EPB ENCSR511CUH Peak bigBed 5 Neural cell originated from H1 EZH2 peaks 4 3222 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/9622f9da-1d42-48a7-b562-1f8c09cb889c/ENCFF610EPB.bigBed\ labelFields none\ longLabel Neural cell originated from H1 EZH2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR511CUH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF610EPB\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_ctss_rev Tc:K562ToHemin_Day04Br2- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_reverse 0 3222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep2.CNhs12702.13162-141B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13162-141B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_tpm_rev Tc:K562ToHemin_Day04Br2- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_reverse 1 3222 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep2.CNhs12702.13162-141B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep2_CNhs12702_13162-141B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13162-141B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep2_CNhs12702_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13162-141B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF785AVA ENCSR445XYW Signal bigWig Right lung tissue female embryo 98 days DNase signal 2 3223 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/32e0eff0-9ea9-4e32-a1fe-0d60ffbdfdce/ENCFF785AVA.bigWig\ color 6,218,147\ longLabel Right lung tissue female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR445XYW Signal\ track wgEncodeReg4Epigenetics_ENCFF785AVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF450CAC ENCSR511CUH Signal bigWig Neural cell originated from H1 EZH2 ENCSR511CUH signal 2 3223 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4ff0df9f-6d41-468b-8950-e6c40522e0e9/ENCFF450CAC.bigWig\ color 155,155,18\ longLabel Neural cell originated from H1 EZH2 ENCSR511CUH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR511CUH Signal\ track wgEncodeReg4TfChip_ENCFF450CAC\ type bigWig\ visibility full\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_ctss_fwd Tc:K562ToHemin_Day04Br3+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_forward 0 3223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep3.CNhs12804.13228-141I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13228-141I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_tpm_fwd Tc:K562ToHemin_Day04Br3+ bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_forward 1 3223 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep3.CNhs12804.13228-141I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13228-141I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF013AUH ENCSR446PXV Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak 4 3224 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/7e39cd90-89cd-4294-8782-a5c4ef893f54/ENCFF013AUH.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR446PXV Peak\ track wgEncodeReg4Epigenetics_ENCFF013AUH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF422TCB ENCSR512ECF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF142 ZNF142 peaks 4 3224 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/d921875a-adac-4e7a-8b75-43d220675c86/ENCFF422TCB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF142 ZNF142 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR512ECF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF422TCB\ type bigBed 5\ useScore 1\ visibility squish\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_ctss_rev Tc:K562ToHemin_Day04Br3- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_reverse 0 3224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep3.CNhs12804.13228-141I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13228-141I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:K562ToHemin_Day04Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6\ urlLabel FANTOM5 Details:\ K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_tpm_rev Tc:K562ToHemin_Day04Br3- bigWig K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_reverse 1 3224 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/K562%20erythroblastic%20leukemia%20response%20to%20hemin%2c%20day04%2c%20biol_rep3.CNhs12804.13228-141I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel K562 erythroblastic leukemia response to hemin, day04, biol_rep3_CNhs12804_13228-141I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13228-141I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:K562ToHemin_Day04Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track K562ErythroblasticLeukemiaResponseToHeminDay04BiolRep3_CNhs12804_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13228-141I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF104SXO ENCSR446PXV Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal 2 3225 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/11efc3be-f3c6-4405-b0dc-42c596b4f805/ENCFF104SXO.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR446PXV Signal\ track wgEncodeReg4Epigenetics_ENCFF104SXO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF077CVH ENCSR512ECF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF142 ZNF142 ENCSR512ECF signal 2 3225 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/f5cb427a-a1ad-45ca-be3d-b7da1702e3ef/ENCFF077CVH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF142 ZNF142 ENCSR512ECF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR512ECF Signal\ track wgEncodeReg4TfChip_ENCFF077CVH\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_ctss_fwd Tc:MdmToLps_00hr15minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_forward 0 3225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor1%20%28t2%20Subject1%29.CNhs13145.12699-135D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12699-135D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_tpm_fwd Tc:MdmToLps_00hr15minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_forward 1 3225 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor1%20%28t2%20Subject1%29.CNhs13145.12699-135D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12699-135D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF948FFU ENCSR446UJL Peak bigBed 5 K562 treated with 1 μM NCT-503 for 48 hours ATAC peak 4 3226 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/35b2e141-10f6-471f-8373-7042ec1ed4d2/ENCFF948FFU.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM NCT-503 for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR446UJL Peak\ track wgEncodeReg4Epigenetics_ENCFF948FFU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF450LDL ENCSR512NLO Peak bigBed 5 K562 MNT peaks 4 3226 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/2ea4676c-2109-4e8f-9e59-9c6b4a87a174/ENCFF450LDL.bigBed\ labelFields none\ longLabel K562 MNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR512NLO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF450LDL\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_ctss_rev Tc:MdmToLps_00hr15minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_reverse 0 3226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor1%20%28t2%20Subject1%29.CNhs13145.12699-135D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12699-135D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr15minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_tpm_rev Tc:MdmToLps_00hr15minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_reverse 1 3226 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr15min%2c%20donor1%20%28t2%20Subject1%29.CNhs13145.12699-135D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr15min, donor1 (t2 Subject1)_CNhs13145_12699-135D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12699-135D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr15minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr15minDonor1T2Subject1_CNhs13145_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12699-135D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF518GXR ENCSR446UJL Signal bigWig K562 treated with 1 μM NCT-503 for 48 hours ATAC signal 2 3227 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/25/ce04235e-9caa-4949-905b-567ad54c8dab/ENCFF518GXR.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM NCT-503 for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR446UJL Signal\ track wgEncodeReg4Epigenetics_ENCFF518GXR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF853ZLS ENCSR512NLO Signal bigWig K562 MNT ENCSR512NLO signal 2 3227 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/8d4f130a-08f0-4844-aa85-478b9f0f48d6/ENCFF853ZLS.bigWig\ color 254,75,173\ longLabel K562 MNT ENCSR512NLO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR512NLO Signal\ track wgEncodeReg4TfChip_ENCFF853ZLS\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_ctss_fwd Tc:MdmToLps_00hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_forward 0 3227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor1%20%28t3%20Subject1%29.CNhs13146.12700-135D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12700-135D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_tpm_fwd Tc:MdmToLps_00hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_forward 1 3227 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor1%20%28t3%20Subject1%29.CNhs13146.12700-135D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12700-135D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF107VKS ENCSR446ZCY Peak bigBed 5 Endodermal cell originated from HUES64 H3K4me3 peak 4 3228 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/fe1fbf0a-f28e-440c-94c7-633d3888ce57/ENCFF107VKS.bigBed\ color 255,0,0\ longLabel Endodermal cell originated from HUES64 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR446ZCY Peak\ track wgEncodeReg4Epigenetics_ENCFF107VKS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF081LTD ENCSR513NBU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713 ZNF713 peaks 4 3228 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/36038918-e5b7-4a27-9705-38494fc3feda/ENCFF081LTD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713 ZNF713 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR513NBU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF081LTD\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_ctss_rev Tc:MdmToLps_00hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_reverse 0 3228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor1%20%28t3%20Subject1%29.CNhs13146.12700-135D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12700-135D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr30minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_tpm_rev Tc:MdmToLps_00hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_reverse 1 3228 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr30min%2c%20donor1%20%28t3%20Subject1%29.CNhs13146.12700-135D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr30min, donor1 (t3 Subject1)_CNhs13146_12700-135D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12700-135D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr30minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr30minDonor1T3Subject1_CNhs13146_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12700-135D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF084BWL ENCSR446ZCY Signal bigWig Endodermal cell originated from HUES64 H3K4me3 signal 2 3229 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/f4beaedb-954d-4095-bc69-0304bffa37ce/ENCFF084BWL.bigWig\ color 255,0,0\ longLabel Endodermal cell originated from HUES64 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR446ZCY Signal\ track wgEncodeReg4Epigenetics_ENCFF084BWL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF488RON ENCSR513NBU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713 ZNF713 ENCSR513NBU signal 2 3229 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/bdf5c91e-6f7d-4af5-a25e-fa18de8d97db/ENCFF488RON.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713 ZNF713 ENCSR513NBU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR513NBU Signal\ track wgEncodeReg4TfChip_ENCFF488RON\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_ctss_fwd Tc:MdmToLps_00hr45minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_forward 0 3229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor1%20%28t4%20Subject1%29.CNhs13147.12701-135E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12701-135E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_tpm_fwd Tc:MdmToLps_00hr45minD1+ bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_forward 1 3229 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor1%20%28t4%20Subject1%29.CNhs13147.12701-135E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12701-135E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF383OZM ENCSR447ANW Peak bigBed 5 Coronary artery tissue female adult 51 years CTCF peak 4 3230 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/57ee69e6-e74c-469b-8ee8-49ab4f6a0180/ENCFF383OZM.bigBed\ color 0,176,240\ labelFields none\ longLabel Coronary artery tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR447ANW Peak\ track wgEncodeReg4Epigenetics_ENCFF383OZM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF438KUN ENCSR513UQG Peak bigBed 5 IMR-90 USF2 peaks 4 3230 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/eaf6db9e-07fa-4e45-83bc-58f66dd36ab7/ENCFF438KUN.bigBed\ labelFields none\ longLabel IMR-90 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR513UQG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF438KUN\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_ctss_rev Tc:MdmToLps_00hr45minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_reverse 0 3230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor1%20%28t4%20Subject1%29.CNhs13147.12701-135E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12701-135E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_00hr45minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_tpm_rev Tc:MdmToLps_00hr45minD1- bigWig Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_reverse 1 3230 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2000hr45min%2c%20donor1%20%28t4%20Subject1%29.CNhs13147.12701-135E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 00hr45min, donor1 (t4 Subject1)_CNhs13147_12701-135E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12701-135E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_00hr45minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS00hr45minDonor1T4Subject1_CNhs13147_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12701-135E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF481WXK ENCSR447ANW Signal bigWig Coronary artery tissue female adult 51 years CTCF signal 2 3231 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/b64e8703-ab44-4d76-8e39-9e01bb7bb981/ENCFF481WXK.bigWig\ color 0,176,240\ longLabel Coronary artery tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR447ANW Signal\ track wgEncodeReg4Epigenetics_ENCFF481WXK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF909JSQ ENCSR513UQG Signal bigWig IMR-90 USF2 ENCSR513UQG signal 2 3231 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/af2d0af4-536b-4a61-91fc-d3b5f4e25f5f/ENCFF909JSQ.bigWig\ color 130,163,45\ longLabel IMR-90 USF2 ENCSR513UQG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR513UQG Signal\ track wgEncodeReg4TfChip_ENCFF909JSQ\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_ctss_fwd Tc:MdmToLps_01hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_forward 0 3231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor1%20%28t5%20Subject1%29.CNhs13148.12702-135E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12702-135E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_tpm_fwd Tc:MdmToLps_01hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_forward 1 3231 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor1%20%28t5%20Subject1%29.CNhs13148.12702-135E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12702-135E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF774TRX ENCSR447OHF Peak bigBed 5 Mucosa of rectum tissue female adult 61 years H3K27ac peak 4 3232 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/cbea3b99-a21b-4592-ab05-7be462cb5618/ENCFF774TRX.bigBed\ color 181,145,0\ longLabel Mucosa of rectum tissue female adult 61 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR447OHF Peak\ track wgEncodeReg4Epigenetics_ENCFF774TRX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF752ATT ENCSR513XQX Peak bigBed 5 A549 SIN3A peaks 4 3232 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/78be5756-c2f7-4458-a8d1-4c0f9a41e8ba/ENCFF752ATT.bigBed\ labelFields none\ longLabel A549 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR513XQX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF752ATT\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_ctss_rev Tc:MdmToLps_01hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_reverse 0 3232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor1%20%28t5%20Subject1%29.CNhs13148.12702-135E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12702-135E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr00minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_tpm_rev Tc:MdmToLps_01hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_reverse 1 3232 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr00min%2c%20donor1%20%28t5%20Subject1%29.CNhs13148.12702-135E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr00min, donor1 (t5 Subject1)_CNhs13148_12702-135E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12702-135E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr00minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr00minDonor1T5Subject1_CNhs13148_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12702-135E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF705FGY ENCSR447OHF Signal bigWig Mucosa of rectum tissue female adult 61 years H3K27ac signal 2 3233 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/9a78c212-78e0-4980-b2e6-53d62412b9f0/ENCFF705FGY.bigWig\ color 181,145,0\ longLabel Mucosa of rectum tissue female adult 61 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR447OHF Signal\ track wgEncodeReg4Epigenetics_ENCFF705FGY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF508BKS ENCSR513XQX Signal bigWig A549 SIN3A ENCSR513XQX signal 2 3233 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/a5cb4ecd-1bee-46aa-a2c7-1cfd37a3d8d8/ENCFF508BKS.bigWig\ color 130,163,45\ longLabel A549 SIN3A ENCSR513XQX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR513XQX Signal\ track wgEncodeReg4TfChip_ENCFF508BKS\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_ctss_fwd Tc:MdmToLps_01hr20minD1+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_forward 0 3233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor1%20%28t6%20Subject1%29.CNhs13149.12703-135E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12703-135E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_tpm_fwd Tc:MdmToLps_01hr20minD1+ bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_forward 1 3233 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor1%20%28t6%20Subject1%29.CNhs13149.12703-135E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12703-135E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF115HIB ENCSR447ZGY Peak bigBed 5 OCI-LY7 H3K27ac peak 4 3234 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/503782c3-4fe9-4550-92a8-72d801828eb8/ENCFF115HIB.bigBed\ color 181,145,0\ longLabel OCI-LY7 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR447ZGY Peak\ track wgEncodeReg4Epigenetics_ENCFF115HIB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF443VVF ENCSR514EOE Peak bigBed 5 HepG2 BRD4 peaks 4 3234 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/7220755f-8cb8-4123-bcb5-ec4ec42bb898/ENCFF443VVF.bigBed\ labelFields none\ longLabel HepG2 BRD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514EOE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF443VVF\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_ctss_rev Tc:MdmToLps_01hr20minD1- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_reverse 0 3234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor1%20%28t6%20Subject1%29.CNhs13149.12703-135E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12703-135E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr20minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_tpm_rev Tc:MdmToLps_01hr20minD1- bigWig Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_reverse 1 3234 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr20min%2c%20donor1%20%28t6%20Subject1%29.CNhs13149.12703-135E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr20min, donor1 (t6 Subject1)_CNhs13149_12703-135E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12703-135E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr20minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr20minDonor1T6Subject1_CNhs13149_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12703-135E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF611XLA ENCSR447ZGY Signal bigWig OCI-LY7 H3K27ac signal 2 3235 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/1940c3dd-6769-4265-a0cd-385391588946/ENCFF611XLA.bigWig\ color 181,145,0\ longLabel OCI-LY7 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR447ZGY Signal\ track wgEncodeReg4Epigenetics_ENCFF611XLA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF094ETW ENCSR514EOE Signal bigWig HepG2 BRD4 ENCSR514EOE signal 2 3235 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0a6e0788-70f0-454b-92dc-74a9c14749f5/ENCFF094ETW.bigWig\ color 137,152,82\ longLabel HepG2 BRD4 ENCSR514EOE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514EOE Signal\ track wgEncodeReg4TfChip_ENCFF094ETW\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_ctss_fwd Tc:MdmToLps_01hr40minD1+ bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_forward 0 3235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor1%20%28t7%20Subject1%29.CNhs13150.12704-135E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12704-135E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr40minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_tpm_fwd Tc:MdmToLps_01hr40minD1+ bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_forward 1 3235 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor1%20%28t7%20Subject1%29.CNhs13150.12704-135E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12704-135E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr40minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF469TNB ENCSR448CEK Peak bigBed 5 Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 3236 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/13d2c936-f049-4346-ae6d-93234914f844/ENCFF469TNB.bigBed\ color 255,0,0\ longLabel Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR448CEK Peak\ track wgEncodeReg4Epigenetics_ENCFF469TNB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF989AQH ENCSR514RAH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARG RARG peaks 4 3236 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/c54274d2-98c5-4c5f-bab6-48d1df2d7711/ENCFF989AQH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARG RARG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514RAH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF989AQH\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_ctss_rev Tc:MdmToLps_01hr40minD1- bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_reverse 0 3236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor1%20%28t7%20Subject1%29.CNhs13150.12704-135E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12704-135E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr40minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_tpm_rev Tc:MdmToLps_01hr40minD1- bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_reverse 1 3236 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor1%20%28t7%20Subject1%29.CNhs13150.12704-135E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor1 (t7 Subject1)_CNhs13150_12704-135E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12704-135E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr40minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor1T7Subject1_CNhs13150_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12704-135E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF800EYR ENCSR448CEK Signal bigWig Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 3237 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/9d85a059-e93a-414b-9f5d-713a63c73b81/ENCFF800EYR.bigWig\ color 255,0,0\ longLabel Stimulated activated naive CD4-positive, alpha-beta T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR448CEK Signal\ track wgEncodeReg4Epigenetics_ENCFF800EYR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF012KST ENCSR514RAH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARG RARG ENCSR514RAH signal 2 3237 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/20da27a5-2d64-4cbc-9f51-bfe113cbce59/ENCFF012KST.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RARG RARG ENCSR514RAH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514RAH Signal\ track wgEncodeReg4TfChip_ENCFF012KST\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_ctss_fwd Tc:MdmToLps_01hr40minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_forward 0 3237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor2%20%28t7%20Subject2%29.CNhs13385.12802-136G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12802-136G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr40minD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_tpm_fwd Tc:MdmToLps_01hr40minD2+ bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_forward 1 3237 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor2%20%28t7%20Subject2%29.CNhs13385.12802-136G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12802-136G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr40minD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF541ZET ENCSR448FZC Peak bigBed 5 Spleen tissue male child 3 years H3K4me3 peak 4 3238 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/7ab0ca27-e622-44cb-a58a-052e37a33277/ENCFF541ZET.bigBed\ color 255,0,0\ longLabel Spleen tissue male child 3 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR448FZC Peak\ track wgEncodeReg4Epigenetics_ENCFF541ZET\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF372SXO ENCSR514VAY Peak bigBed 5 GM12878 HCFC1 peaks 4 3238 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/6078eaf6-af69-4a82-bbe3-773eb535003b/ENCFF372SXO.bigBed\ labelFields none\ longLabel GM12878 HCFC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514VAY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF372SXO\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_ctss_rev Tc:MdmToLps_01hr40minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_reverse 0 3238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor2%20%28t7%20Subject2%29.CNhs13385.12802-136G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12802-136G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr40minD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_tpm_rev Tc:MdmToLps_01hr40minD2- bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_reverse 1 3238 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor2%20%28t7%20Subject2%29.CNhs13385.12802-136G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor2 (t7 Subject2)_CNhs13385_12802-136G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12802-136G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr40minD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor2T7Subject2_CNhs13385_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12802-136G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF735OIS ENCSR448FZC Signal bigWig Spleen tissue male child 3 years H3K4me3 signal 2 3239 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/3f16d4d7-83f5-42a8-bbd8-ab7afeb54ce0/ENCFF735OIS.bigWig\ color 255,0,0\ longLabel Spleen tissue male child 3 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR448FZC Signal\ track wgEncodeReg4Epigenetics_ENCFF735OIS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF887BNK ENCSR514VAY Signal bigWig GM12878 HCFC1 ENCSR514VAY signal 2 3239 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/86257339-942b-4ab0-94a3-0e37cc44f7db/ENCFF887BNK.bigWig\ color 254,75,173\ longLabel GM12878 HCFC1 ENCSR514VAY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514VAY Signal\ track wgEncodeReg4TfChip_ENCFF887BNK\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_ctss_fwd Tc:MdmToLps_01hr40minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_forward 0 3239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor3%20%28t7%20Subject3%29.CNhs13180.12900-137I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12900-137I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr40minD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_tpm_fwd Tc:MdmToLps_01hr40minD3+ bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_forward 1 3239 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor3%20%28t7%20Subject3%29.CNhs13180.12900-137I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12900-137I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr40minD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF679HCC ENCSR449AUD Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K27ac signal 2 3240 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ea6069fb-0f6f-4758-bc13-12d67d4bd16f/ENCFF679HCC.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR449AUD Signal\ track wgEncodeReg4Epigenetics_ENCFF679HCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF273VKX ENCSR514VYD Peak bigBed 5 GM12878 NR2F1 peaks 4 3240 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/673a6f4d-bd56-411f-abf0-e892518a6b53/ENCFF273VKX.bigBed\ labelFields none\ longLabel GM12878 NR2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514VYD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF273VKX\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_ctss_rev Tc:MdmToLps_01hr40minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_reverse 0 3240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor3%20%28t7%20Subject3%29.CNhs13180.12900-137I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12900-137I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_01hr40minD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_tpm_rev Tc:MdmToLps_01hr40minD3- bigWig Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_reverse 1 3240 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2001hr40min%2c%20donor3%20%28t7%20Subject3%29.CNhs13180.12900-137I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 01hr40min, donor3 (t7 Subject3)_CNhs13180_12900-137I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12900-137I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_01hr40minD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS01hr40minDonor3T7Subject3_CNhs13180_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12900-137I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF591PJW ENCSR449AXO Peak bigBed 5 Neural progenitor cell originated from H9 H3K27ac peak 4 3241 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b9c18be7-3155-4888-ae24-ea171def259a/ENCFF591PJW.bigBed\ color 181,145,0\ longLabel Neural progenitor cell originated from H9 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR449AXO Peak\ track wgEncodeReg4Epigenetics_ENCFF591PJW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF553SLZ ENCSR514VYD Signal bigWig GM12878 NR2F1 ENCSR514VYD signal 2 3241 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/d43834ac-9702-4950-a538-6aee2de42667/ENCFF553SLZ.bigWig\ color 254,75,173\ longLabel GM12878 NR2F1 ENCSR514VYD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR514VYD Signal\ track wgEncodeReg4TfChip_ENCFF553SLZ\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_ctss_fwd Tc:MdmToLps_02hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_forward 0 3241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor1%20%28t8%20Subject1%29.CNhs13151.12705-135E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12705-135E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_tpm_fwd Tc:MdmToLps_02hr00minD1+ bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_forward 1 3241 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor1%20%28t8%20Subject1%29.CNhs13151.12705-135E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12705-135E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF618RAO ENCSR449AXO Signal bigWig Neural progenitor cell originated from H9 H3K27ac signal 2 3242 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ec16b78e-78b1-41a1-ade1-de6e108074f9/ENCFF618RAO.bigWig\ color 181,145,0\ longLabel Neural progenitor cell originated from H9 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR449AXO Signal\ track wgEncodeReg4Epigenetics_ENCFF618RAO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF916QXW ENCSR515LRI Peak bigBed 5 Suprapubic skin tissue female adult (53 years) CTCF peaks 4 3242 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/32051349-abf3-49da-bb8b-9b4a5bd9d90c/ENCFF916QXW.bigBed\ labelFields none\ longLabel Suprapubic skin tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR515LRI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF916QXW\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_ctss_rev Tc:MdmToLps_02hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_reverse 0 3242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor1%20%28t8%20Subject1%29.CNhs13151.12705-135E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12705-135E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_02hr00minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_tpm_rev Tc:MdmToLps_02hr00minD1- bigWig Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_reverse 1 3242 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2002hr00min%2c%20donor1%20%28t8%20Subject1%29.CNhs13151.12705-135E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 02hr00min, donor1 (t8 Subject1)_CNhs13151_12705-135E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12705-135E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_02hr00minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS02hr00minDonor1T8Subject1_CNhs13151_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12705-135E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF521CRS ENCSR449HOQ Peak bigBed 5 Right hindlimb tissue male embryo 81 days DNase peak 4 3243 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/f276e844-5e73-4a96-9047-5f37597914bc/ENCFF521CRS.bigBed\ color 6,218,147\ labelFields none\ longLabel Right hindlimb tissue male embryo 81 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR449HOQ Peak\ track wgEncodeReg4Epigenetics_ENCFF521CRS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF081ZME ENCSR515LRI Signal bigWig Suprapubic skin tissue female adult (53 years) CTCF ENCSR515LRI signal 2 3243 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f4c76821-f98d-41c6-8631-b5c680103979/ENCFF081ZME.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (53 years) CTCF ENCSR515LRI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR515LRI Signal\ track wgEncodeReg4TfChip_ENCFF081ZME\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_ctss_fwd Tc:MdmToLps_03hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_forward 0 3243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor1%20%28t11%20Subject1%29.CNhs13153.12708-135E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12708-135E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_tpm_fwd Tc:MdmToLps_03hr30minD1+ bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_forward 1 3243 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor1%20%28t11%20Subject1%29.CNhs13153.12708-135E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12708-135E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF207ZFW ENCSR449HOQ Signal bigWig Right hindlimb tissue male embryo 81 days DNase signal 2 3244 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/2051b4d6-08f4-424c-ab31-4dc282faa84b/ENCFF207ZFW.bigWig\ color 6,218,147\ longLabel Right hindlimb tissue male embryo 81 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR449HOQ Signal\ track wgEncodeReg4Epigenetics_ENCFF207ZFW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF589EBD ENCSR516DDO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7 ATF7 peaks 4 3244 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/918afddf-5495-4bab-9285-9092935ff5ff/ENCFF589EBD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7 ATF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR516DDO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF589EBD\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_ctss_rev Tc:MdmToLps_03hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_reverse 0 3244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor1%20%28t11%20Subject1%29.CNhs13153.12708-135E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12708-135E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_03hr30minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_tpm_rev Tc:MdmToLps_03hr30minD1- bigWig Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_reverse 1 3244 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2003hr30min%2c%20donor1%20%28t11%20Subject1%29.CNhs13153.12708-135E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 03hr30min, donor1 (t11 Subject1)_CNhs13153_12708-135E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12708-135E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_03hr30minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS03hr30minDonor1T11Subject1_CNhs13153_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12708-135E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF046SHF ENCSR449SEF Peak bigBed 5 Transverse colon tissue female adult 51 years CTCF peak 4 3245 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/8f22ced4-6b06-4d87-b4cd-1b6a5680b96e/ENCFF046SHF.bigBed\ color 0,176,240\ labelFields none\ longLabel Transverse colon tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR449SEF Peak\ track wgEncodeReg4Epigenetics_ENCFF046SHF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF523YQA ENCSR516DDO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7 ATF7 ENCSR516DDO signal 2 3245 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/4148158b-bd84-43b1-aa8b-219df6abe4f2/ENCFF523YQA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF7 ATF7 ENCSR516DDO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR516DDO Signal\ track wgEncodeReg4TfChip_ENCFF523YQA\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_ctss_fwd Tc:MdmToLps_04hrD1+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_forward 0 3245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor1%20%28t12%20Subject1%29.CNhs13154.12709-135E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12709-135E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_tpm_fwd Tc:MdmToLps_04hrD1+ bigWig Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_forward 1 3245 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor1%20%28t12%20Subject1%29.CNhs13154.12709-135E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12709-135E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF626YRZ ENCSR449SEF Signal bigWig Transverse colon tissue female adult 51 years CTCF signal 2 3246 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/983a748a-20f8-4aba-bd64-7487d7a44fd8/ENCFF626YRZ.bigWig\ color 0,176,240\ longLabel Transverse colon tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR449SEF Signal\ track wgEncodeReg4Epigenetics_ENCFF626YRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF592BJA ENCSR516HUP Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) ZBTB33 peaks 4 3246 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/b22777da-46de-4553-9610-6c23a26d4276/ENCFF592BJA.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR516HUP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF592BJA\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_ctss_rev Tc:MdmToLps_04hrD1- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_reverse 0 3246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor1%20%28t12%20Subject1%29.CNhs13154.12709-135E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12709-135E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_04hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_tpm_rev Tc:MdmToLps_04hrD1- bigWig Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_reverse 1 3246 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2004hr%2c%20donor1%20%28t12%20Subject1%29.CNhs13154.12709-135E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 04hr, donor1 (t12 Subject1)_CNhs13154_12709-135E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12709-135E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_04hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS04hrDonor1T12Subject1_CNhs13154_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12709-135E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF886WNR ENCSR450BLH Peak bigBed 5 Adrenal gland tissue male adult 54 years CTCF peak 4 3247 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f4fb2288-f5a9-43cd-9bd9-e6a617c0693b/ENCFF886WNR.bigBed\ color 0,176,240\ labelFields none\ longLabel Adrenal gland tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450BLH Peak\ track wgEncodeReg4Epigenetics_ENCFF886WNR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF451OTO ENCSR516HUP Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) ZBTB33 ENCSR516HUP signal 2 3247 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/f249dcb7-5305-4875-844a-b23c9f55b206/ENCFF451OTO.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) ZBTB33 ENCSR516HUP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR516HUP Signal\ track wgEncodeReg4TfChip_ENCFF451OTO\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_ctss_fwd Tc:MdmToLps_06hrD1+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_forward 0 3247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor1%20%28t14%20Subject1%29.CNhs12925.12711-135F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12711-135F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_tpm_fwd Tc:MdmToLps_06hrD1+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_forward 1 3247 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor1%20%28t14%20Subject1%29.CNhs12925.12711-135F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12711-135F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF035TJC ENCSR450BLH Signal bigWig Adrenal gland tissue male adult 54 years CTCF signal 2 3248 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/965cf543-e0d6-4c07-bbad-2b131c64c799/ENCFF035TJC.bigWig\ color 0,176,240\ longLabel Adrenal gland tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450BLH Signal\ track wgEncodeReg4Epigenetics_ENCFF035TJC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF234ZEU ENCSR516SMM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF peaks 4 3248 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/25/81a462c2-2a5f-4283-b6aa-4e296501aac4/ENCFF234ZEU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR516SMM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF234ZEU\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_ctss_rev Tc:MdmToLps_06hrD1- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_reverse 0 3248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor1%20%28t14%20Subject1%29.CNhs12925.12711-135F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12711-135F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_tpm_rev Tc:MdmToLps_06hrD1- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_reverse 1 3248 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor1%20%28t14%20Subject1%29.CNhs12925.12711-135F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor1 (t14 Subject1)_CNhs12925_12711-135F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12711-135F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor1T14Subject1_CNhs12925_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12711-135F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF161KWY ENCSR450CSM Peak bigBed 5 Nephron progenitor cell, 8 days post differentiation H3K27ac peak 4 3249 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/12/845feebd-0d0b-4f65-82b3-431222b676ed/ENCFF161KWY.bigBed\ color 181,145,0\ longLabel Nephron progenitor cell, 8 days post differentiation H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450CSM Peak\ track wgEncodeReg4Epigenetics_ENCFF161KWY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF661THK ENCSR516SMM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF ENCSR516SMM signal 2 3249 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/25/e403a1a5-baf3-4d7a-82db-cc6abff35dfb/ENCFF661THK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF ENCSR516SMM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR516SMM Signal\ track wgEncodeReg4TfChip_ENCFF661THK\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_ctss_fwd Tc:MdmToLps_06hrD2+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_forward 0 3249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor2%20%28t14%20Subject2%29.CNhs13393.12809-136H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12809-136H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_tpm_fwd Tc:MdmToLps_06hrD2+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_forward 1 3249 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor2%20%28t14%20Subject2%29.CNhs13393.12809-136H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12809-136H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF956JBC ENCSR450CSM Signal bigWig Nephron progenitor cell, 8 days post differentiation H3K27ac signal 2 3250 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/12/78db5461-3a26-41fd-8178-fe44d5b6b9d4/ENCFF956JBC.bigWig\ color 181,145,0\ longLabel Nephron progenitor cell, 8 days post differentiation H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450CSM Signal\ track wgEncodeReg4Epigenetics_ENCFF956JBC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF501FEC ENCSR517FVL Peak bigBed 5 Body of pancreas tissue male adult (54 years) POLR2A peaks 4 3250 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/06b1e751-6b74-437a-97ae-b037871a3448/ENCFF501FEC.bigBed\ labelFields none\ longLabel Body of pancreas tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR517FVL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF501FEC\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_ctss_rev Tc:MdmToLps_06hrD2- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse 0 3250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor2%20%28t14%20Subject2%29.CNhs13393.12809-136H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12809-136H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_tpm_rev Tc:MdmToLps_06hrD2- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse 1 3250 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor2%20%28t14%20Subject2%29.CNhs13393.12809-136H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor2 (t14 Subject2)_CNhs13393_12809-136H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12809-136H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor2T14Subject2_CNhs13393_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12809-136H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF037IYT ENCSR450FRI Peak bigBed 5 Esophagus squamous epithelium tissue male adult 54 years CTCF peak 4 3251 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/af37433a-d312-47c9-8292-7d13d85be34b/ENCFF037IYT.bigBed\ color 0,176,240\ labelFields none\ longLabel Esophagus squamous epithelium tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450FRI Peak\ track wgEncodeReg4Epigenetics_ENCFF037IYT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF652ELQ ENCSR517FVL Signal bigWig Body of pancreas tissue male adult (54 years) POLR2A ENCSR517FVL signal 2 3251 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/e184a92f-64d0-4e04-8ec1-2d9da20aa29d/ENCFF652ELQ.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue male adult (54 years) POLR2A ENCSR517FVL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR517FVL Signal\ track wgEncodeReg4TfChip_ENCFF652ELQ\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_ctss_fwd Tc:MdmToLps_06hrD3+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_forward 0 3251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor3%20%28t14%20Subject3%29.CNhs13187.12907-137I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12907-137I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_tpm_fwd Tc:MdmToLps_06hrD3+ bigWig Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_forward 1 3251 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor3%20%28t14%20Subject3%29.CNhs13187.12907-137I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12907-137I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF529SUF ENCSR450FRI Signal bigWig Esophagus squamous epithelium tissue male adult 54 years CTCF signal 2 3252 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/813d93d7-7675-4f24-bf0a-dd48dbcacf96/ENCFF529SUF.bigWig\ color 0,176,240\ longLabel Esophagus squamous epithelium tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450FRI Signal\ track wgEncodeReg4Epigenetics_ENCFF529SUF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF209OTE ENCSR517HGZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781 ZNF781 peaks 4 3252 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/2d3e278d-d88b-453b-9514-5cacbdb72951/ENCFF209OTE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781 ZNF781 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR517HGZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF209OTE\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_ctss_rev Tc:MdmToLps_06hrD3- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse 0 3252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor3%20%28t14%20Subject3%29.CNhs13187.12907-137I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12907-137I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_06hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_tpm_rev Tc:MdmToLps_06hrD3- bigWig Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse 1 3252 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2006hr%2c%20donor3%20%28t14%20Subject3%29.CNhs13187.12907-137I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 06hr, donor3 (t14 Subject3)_CNhs13187_12907-137I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12907-137I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_06hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS06hrDonor3T14Subject3_CNhs13187_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12907-137I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF347NQA ENCSR450PWF Peak bigBed 5 Thyroid gland tissue female adult 51 years DNase peak 4 3253 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/12b84cbf-592c-4b13-bb12-6f5e2dc1346d/ENCFF347NQA.bigBed\ color 6,218,147\ labelFields none\ longLabel Thyroid gland tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450PWF Peak\ track wgEncodeReg4Epigenetics_ENCFF347NQA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF071NOG ENCSR517HGZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781 ZNF781 ENCSR517HGZ signal 2 3253 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/0e304807-3dd3-4361-b936-ac2ca906d3f1/ENCFF071NOG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF781 ZNF781 ENCSR517HGZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR517HGZ Signal\ track wgEncodeReg4TfChip_ENCFF071NOG\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_ctss_fwd Tc:MdmToLps_07hrD1+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_forward 0 3253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor1%20%28t15%20Subject1%29.CNhs12926.12712-135F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12712-135F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_tpm_fwd Tc:MdmToLps_07hrD1+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_forward 1 3253 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor1%20%28t15%20Subject1%29.CNhs12926.12712-135F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12712-135F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF379EHP ENCSR450PWF Signal bigWig Thyroid gland tissue female adult 51 years DNase signal 2 3254 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/e0be9f8e-13e7-43e5-a12b-f1c56a3f856b/ENCFF379EHP.bigWig\ color 6,218,147\ longLabel Thyroid gland tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR450PWF Signal\ track wgEncodeReg4Epigenetics_ENCFF379EHP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF528PUT ENCSR518KLO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NRL NRL peaks 4 3254 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/111a7880-a5c8-4931-b0f7-8c7b3cb89cd3/ENCFF528PUT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NRL NRL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR518KLO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF528PUT\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_ctss_rev Tc:MdmToLps_07hrD1- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_reverse 0 3254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor1%20%28t15%20Subject1%29.CNhs12926.12712-135F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12712-135F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_tpm_rev Tc:MdmToLps_07hrD1- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_reverse 1 3254 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor1%20%28t15%20Subject1%29.CNhs12926.12712-135F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor1 (t15 Subject1)_CNhs12926_12712-135F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12712-135F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor1T15Subject1_CNhs12926_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12712-135F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF102BHW ENCSR452COS Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years ATAC peak 4 3255 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/8bf836ee-5f14-4768-a206-195eeeebceed/ENCFF102BHW.bigBed\ color 2,199,185\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452COS Peak\ track wgEncodeReg4Epigenetics_ENCFF102BHW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF316UIU ENCSR518KLO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NRL NRL ENCSR518KLO signal 2 3255 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4504711c-bde1-4711-b191-f332d3b7cf40/ENCFF316UIU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NRL NRL ENCSR518KLO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR518KLO Signal\ track wgEncodeReg4TfChip_ENCFF316UIU\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_ctss_fwd Tc:MdmToLps_07hrD2+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward 0 3255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_fwd Tc:MdmToLps_07hrD2+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward 1 3255 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF567YWL ENCSR452COS Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years ATAC signal 2 3256 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/d26760e0-b23f-4647-a68f-4ef015e72ac8/ENCFF567YWL.bigWig\ color 2,199,185\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 50 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452COS Signal\ track wgEncodeReg4Epigenetics_ENCFF567YWL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF429VKC ENCSR518WPL Peak bigBed 5 HepG2 NR2F6 peaks 4 3256 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/9540d5e5-2a17-438b-a629-7625bce7ac5c/ENCFF429VKC.bigBed\ labelFields none\ longLabel HepG2 NR2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR518WPL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF429VKC\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_ctss_rev Tc:MdmToLps_07hrD2- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse 0 3256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_rev Tc:MdmToLps_07hrD2- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse 1 3256 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor2%20%28t15%20Subject2%29.CNhs13394.12810-136H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor2 (t15 Subject2)_CNhs13394_12810-136H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12810-136H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor2T15Subject2_CNhs13394_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12810-136H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF827ATS ENCSR452DCM Peak bigBed 5 CD14-positive monocyte male adult 21 years DNase peak 4 3257 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/034fb312-d605-48fa-83e0-f4398f06860f/ENCFF827ATS.bigBed\ color 6,218,147\ labelFields none\ longLabel CD14-positive monocyte male adult 21 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452DCM Peak\ track wgEncodeReg4Epigenetics_ENCFF827ATS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF631UIA ENCSR518WPL Signal bigWig HepG2 NR2F6 ENCSR518WPL signal 2 3257 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/650268c6-d8b4-4873-840c-7c3b1caef1f9/ENCFF631UIA.bigWig\ color 137,152,82\ longLabel HepG2 NR2F6 ENCSR518WPL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR518WPL Signal\ track wgEncodeReg4TfChip_ENCFF631UIA\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_fwd Tc:MdmToLps_07hrD3+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward 0 3257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_fwd Tc:MdmToLps_07hrD3+ bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward 1 3257 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF459WKU ENCSR452DCM Signal bigWig CD14-positive monocyte male adult 21 years DNase signal 2 3258 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/ab1b21e4-0235-48ee-b52f-b78d39e5f02e/ENCFF459WKU.bigWig\ color 6,218,147\ longLabel CD14-positive monocyte male adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452DCM Signal\ track wgEncodeReg4Epigenetics_ENCFF459WKU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF493GNS ENCSR519QAA Peak bigBed 5 HepG2 HNRNPK peaks 4 3258 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/82719bfc-d0a6-4362-86b3-05f8cc237664/ENCFF493GNS.bigBed\ labelFields none\ longLabel HepG2 HNRNPK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR519QAA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF493GNS\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_rev Tc:MdmToLps_07hrD3- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse 0 3258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_07hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_rev Tc:MdmToLps_07hrD3- bigWig Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse 1 3258 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2007hr%2c%20donor3%20%28t15%20Subject3%29.CNhs13325.12908-138A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 07hr, donor3 (t15 Subject3)_CNhs13325_12908-138A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12908-138A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_07hrD3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS07hrDonor3T15Subject3_CNhs13325_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12908-138A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF849PTY ENCSR452EGE Peak bigBed 5 Muscle of arm tissue male embryo 120 days DNase peak 4 3259 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/3a0fa675-c832-4f80-a857-9e49d75818fe/ENCFF849PTY.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue male embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452EGE Peak\ track wgEncodeReg4Epigenetics_ENCFF849PTY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF794NZW ENCSR519QAA Signal bigWig HepG2 HNRNPK ENCSR519QAA signal 2 3259 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/05d5ae86-495c-4045-ba77-4e975726d669/ENCFF794NZW.bigWig\ color 137,152,82\ longLabel HepG2 HNRNPK ENCSR519QAA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR519QAA Signal\ track wgEncodeReg4TfChip_ENCFF794NZW\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_fwd Tc:MdmToLps_10hrD1+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward 0 3259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_fwd Tc:MdmToLps_10hrD1+ bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward 1 3259 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF575EKU ENCSR452EGE Signal bigWig Muscle of arm tissue male embryo 120 days DNase signal 2 3260 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/630f4c47-2fde-4c88-9e9a-6dbe318a9773/ENCFF575EKU.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue male embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452EGE Signal\ track wgEncodeReg4Epigenetics_ENCFF575EKU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF152QRL ENCSR519QYU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101 ZNF101 peaks 4 3260 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/0c35d176-2df8-498f-8f9f-11c0bd4928ae/ENCFF152QRL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101 ZNF101 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR519QYU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF152QRL\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_rev Tc:MdmToLps_10hrD1- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse 0 3260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_10hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_rev Tc:MdmToLps_10hrD1- bigWig Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse 1 3260 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2010hr%2c%20donor1%20%28t17%20Subject1%29.CNhs12928.12714-135F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 10hr, donor1 (t17 Subject1)_CNhs12928_12714-135F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12714-135F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_10hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS10hrDonor1T17Subject1_CNhs12928_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12714-135F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF662EUG ENCSR452KYY Peak bigBed 5 Middle frontal area 46 tissue male adult 84 years CTCF peak 4 3261 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/db233dee-bab4-4da0-8470-d4342f67877d/ENCFF662EUG.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 84 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452KYY Peak\ track wgEncodeReg4Epigenetics_ENCFF662EUG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF052TPG ENCSR519QYU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101 ZNF101 ENCSR519QYU signal 2 3261 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2ffeefcf-58eb-42eb-aa76-131f33cd6a1c/ENCFF052TPG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF101 ZNF101 ENCSR519QYU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR519QYU Signal\ track wgEncodeReg4TfChip_ENCFF052TPG\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_fwd Tc:MdmToLps_16hrD1+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward 0 3261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor1%20%28t20%20Subject1%29.CNhs12930.12717-135F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12717-135F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_tpm_fwd Tc:MdmToLps_16hrD1+ bigWig Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward 1 3261 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor1%20%28t20%20Subject1%29.CNhs12930.12717-135F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12717-135F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF496PUD ENCSR452KYY Signal bigWig Middle frontal area 46 tissue male adult 84 years CTCF signal 2 3262 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/9a11e317-0bbf-4b15-92bf-3f839cc86b56/ENCFF496PUD.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue male adult 84 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452KYY Signal\ track wgEncodeReg4Epigenetics_ENCFF496PUD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF368GSR ENCSR519WMW Peak bigBed 5 K562 SMARCC2 peaks 4 3262 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/50b398f9-4b12-4092-9189-0bfb5e16afe7/ENCFF368GSR.bigBed\ labelFields none\ longLabel K562 SMARCC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR519WMW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF368GSR\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_rev Tc:MdmToLps_16hrD1- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_reverse 0 3262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor1%20%28t20%20Subject1%29.CNhs12930.12717-135F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12717-135F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToLps_16hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_tpm_rev Tc:MdmToLps_16hrD1- bigWig Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_reverse 1 3262 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20LPS%2c%2016hr%2c%20donor1%20%28t20%20Subject1%29.CNhs12930.12717-135F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to LPS, 16hr, donor1 (t20 Subject1)_CNhs12930_12717-135F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12717-135F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToLps_16hrD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToLPS16hrDonor1T20Subject1_CNhs12930_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12717-135F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF291GKP ENCSR452OSK Peak bigBed 5 Right cardiac atrium tissue male adult 40 years ATAC peak 4 3263 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/16/27c4138e-119c-4ade-9694-c980adcaf8c1/ENCFF291GKP.bigBed\ color 2,199,185\ longLabel Right cardiac atrium tissue male adult 40 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452OSK Peak\ track wgEncodeReg4Epigenetics_ENCFF291GKP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF116RMR ENCSR519WMW Signal bigWig K562 SMARCC2 ENCSR519WMW signal 2 3263 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/8272fa1c-b092-4f02-8f69-55190d7bce94/ENCFF116RMR.bigWig\ color 254,75,173\ longLabel K562 SMARCC2 ENCSR519WMW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR519WMW Signal\ track wgEncodeReg4TfChip_ENCFF116RMR\ type bigWig\ visibility full\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_ctss_fwd Tc:MdmToMock_00hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_forward 0 3263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aMI_0h%29.CNhs13637.13304-142I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13304-142I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_tpm_fwd Tc:MdmToMock_00hr00minD1+ bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_forward 1 3263 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aMI_0h%29.CNhs13637.13304-142I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13304-142I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF866LTQ ENCSR452OSK Signal bigWig Right cardiac atrium tissue male adult 40 years ATAC signal 2 3264 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/16/01a9db85-90d0-4748-8bd2-8d0d65e0981c/ENCFF866LTQ.bigWig\ color 2,199,185\ longLabel Right cardiac atrium tissue male adult 40 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452OSK Signal\ track wgEncodeReg4Epigenetics_ENCFF866LTQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF345JDB ENCSR520MCD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPD CEBPD peaks 4 3264 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/907f658b-d043-42bc-9ff5-5403beedbc8d/ENCFF345JDB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPD CEBPD peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR520MCD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF345JDB\ type bigBed 5\ useScore 1\ visibility squish\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_ctss_rev Tc:MdmToMock_00hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_reverse 0 3264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aMI_0h%29.CNhs13637.13304-142I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13304-142I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MdmToMock_00hr00minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1\ urlLabel FANTOM5 Details:\ MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_tpm_rev Tc:MdmToMock_00hr00minD1- bigWig Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_reverse 1 3264 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Monocyte-derived%20macrophages%20response%20to%20mock%20influenza%20infection%2c%2000hr00min%2c%20donor1%20%28868_121%3aMI_0h%29.CNhs13637.13304-142I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Monocyte-derived macrophages response to mock influenza infection, 00hr00min, donor1 (868_121:MI_0h)_CNhs13637_13304-142I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13304-142I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MdmToMock_00hr00minD1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MonocytederivedMacrophagesResponseToMockInfluenzaInfection00hr00minDonor1868_121MI_0h_CNhs13637_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13304-142I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF753UDX ENCSR452RAX Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours DNase peak 4 3265 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/acfb6bc8-8998-40bd-aa84-ae681586bf39/ENCFF753UDX.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452RAX Peak\ track wgEncodeReg4Epigenetics_ENCFF753UDX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF247ZAW ENCSR520MCD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPD CEBPD ENCSR520MCD signal 2 3265 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d098df95-542c-455e-92bb-477de9ada008/ENCFF247ZAW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CEBPD CEBPD ENCSR520MCD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR520MCD Signal\ track wgEncodeReg4TfChip_ENCFF247ZAW\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_ctss_fwd Tc:MscToAdiposeUndiffBr1+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_forward 0 3265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep1.CNhs13692.13280-142F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13280-142F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_tpm_fwd Tc:MscToAdiposeUndiffBr1+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_forward 1 3265 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep1.CNhs13692.13280-142F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13280-142F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF956YKS ENCSR452RAX Signal bigWig CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours DNase signal 2 3266 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/123a945a-1a6a-46d8-b9c7-b9c52cc6f95e/ENCFF956YKS.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-6 for 8 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR452RAX Signal\ track wgEncodeReg4Epigenetics_ENCFF956YKS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF584QGB ENCSR521IID Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) MAX peaks 4 3266 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/5f0ccc97-6aba-4050-82ed-6abfbeedfed1/ENCFF584QGB.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR521IID Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF584QGB\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_ctss_rev Tc:MscToAdiposeUndiffBr1- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_reverse 0 3266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep1.CNhs13692.13280-142F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13280-142F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_tpm_rev Tc:MscToAdiposeUndiffBr1- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_reverse 1 3266 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep1.CNhs13692.13280-142F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep1_CNhs13692_13280-142F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13280-142F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep1_CNhs13692_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13280-142F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF808WGR ENCSR453EVC Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult 36 years DNase peak 4 3267 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/afa64060-2fe5-4e73-b8f1-7327c1b528fa/ENCFF808WGR.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive male adult 36 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453EVC Peak\ track wgEncodeReg4Epigenetics_ENCFF808WGR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF658UUW ENCSR521IID Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) MAX ENCSR521IID signal 2 3267 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/4dd0a12c-21c2-4438-bb3e-ac81d03de9b9/ENCFF658UUW.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) MAX ENCSR521IID signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR521IID Signal\ track wgEncodeReg4TfChip_ENCFF658UUW\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_ctss_fwd Tc:MscToAdiposeUndiffBr2+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_forward 0 3267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep2.CNhs13633.13281-142F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13281-142F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_tpm_fwd Tc:MscToAdiposeUndiffBr2+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_forward 1 3267 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep2.CNhs13633.13281-142F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13281-142F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF416AAY ENCSR453EVC Signal bigWig Common myeloid progenitor, CD34-positive male adult 36 years DNase signal 2 3268 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/3921b1c2-611b-4189-9473-4729b34fbf28/ENCFF416AAY.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive male adult 36 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453EVC Signal\ track wgEncodeReg4Epigenetics_ENCFF416AAY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF737WCD ENCSR523XCR Peak bigBed 5 HepG2 RNF2 peaks 4 3268 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/1792e231-89dc-41fd-97f2-eb8401d36c32/ENCFF737WCD.bigBed\ labelFields none\ longLabel HepG2 RNF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR523XCR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF737WCD\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_ctss_rev Tc:MscToAdiposeUndiffBr2- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_reverse 0 3268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep2.CNhs13633.13281-142F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13281-142F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_tpm_rev Tc:MscToAdiposeUndiffBr2- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_reverse 1 3268 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep2.CNhs13633.13281-142F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep2_CNhs13633_13281-142F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13281-142F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep2_CNhs13633_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13281-142F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF192EXF ENCSR453MUW Peak bigBed 5 Upper lobe of left lung tissue female adult 51 years H3K27ac peak 4 3269 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/bc1ac096-95ea-4ebf-8427-6c044e5ffc00/ENCFF192EXF.bigBed\ color 181,145,0\ longLabel Upper lobe of left lung tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453MUW Peak\ track wgEncodeReg4Epigenetics_ENCFF192EXF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF171BIT ENCSR523XCR Signal bigWig HepG2 RNF2 ENCSR523XCR signal 2 3269 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/720fc630-f796-4cab-9b6f-fea402ddedaa/ENCFF171BIT.bigWig\ color 137,152,82\ longLabel HepG2 RNF2 ENCSR523XCR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR523XCR Signal\ track wgEncodeReg4TfChip_ENCFF171BIT\ type bigWig\ visibility full\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_fwd Tc:MscToAdiposeUndiffBr3+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward 0 3269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_fwd Tc:MscToAdiposeUndiffBr3+ bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward 1 3269 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF054VRQ ENCSR453MUW Signal bigWig Upper lobe of left lung tissue female adult 51 years H3K27ac signal 2 3270 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/91b03681-84ac-4166-938d-a542254e87f6/ENCFF054VRQ.bigWig\ color 181,145,0\ longLabel Upper lobe of left lung tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453MUW Signal\ track wgEncodeReg4Epigenetics_ENCFF054VRQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF133ELP ENCSR524BUE Peak bigBed 5 K562 RAD51 peaks 4 3270 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/18f540f2-ac10-4ea3-b66f-741513293376/ENCFF133ELP.bigBed\ labelFields none\ longLabel K562 RAD51 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR524BUE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF133ELP\ type bigBed 5\ useScore 1\ visibility squish\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_rev Tc:MscToAdiposeUndiffBr3- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse 0 3270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:MscToAdiposeUndiffBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_rev Tc:MscToAdiposeUndiffBr3- bigWig mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse 1 3270 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/mesenchymal%20stem%20cells%20%28adipose%20derived%29%2c%20undifferentiated%20control%2c%20biol_rep3.CNhs13634.13282-142F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel mesenchymal stem cells (adipose derived), undifferentiated control, biol_rep3_CNhs13634_13282-142F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=13282-142F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:MscToAdiposeUndiffBr3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track MesenchymalStemCellsAdiposeDerivedUndifferentiatedControlBiolRep3_CNhs13634_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:13282-142F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF374ZNH ENCSR453MVF Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak 4 3271 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/c2cab0d8-63bf-4753-8bb5-331e82637f16/ENCFF374ZNH.bigBed\ color 181,145,0\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453MVF Peak\ track wgEncodeReg4Epigenetics_ENCFF374ZNH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF565UZM ENCSR524BUE Signal bigWig K562 RAD51 ENCSR524BUE signal 2 3271 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/20/80d07737-4e82-4ae2-830f-0713355a5c32/ENCFF565UZM.bigWig\ color 254,75,173\ longLabel K562 RAD51 ENCSR524BUE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR524BUE Signal\ track wgEncodeReg4TfChip_ENCFF565UZM\ type bigWig\ visibility full\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_fwd Tc:Saos-2Untreated_Day28Br1+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward 0 3271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_fwd Tc:Saos-2Untreated_Day28Br1+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward 1 3271 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br1+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF191NJM ENCSR453MVF Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal 2 3272 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/511330ff-e072-43f2-8462-e44c59261a27/ENCFF191NJM.bigWig\ color 181,145,0\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell male adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453MVF Signal\ track wgEncodeReg4Epigenetics_ENCFF191NJM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF359QOX ENCSR524RLU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFXAP RFXAP peaks 4 3272 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/e859a1f0-e1f6-4323-a524-751904b9e3ec/ENCFF359QOX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFXAP RFXAP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR524RLU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF359QOX\ type bigBed 5\ useScore 1\ visibility squish\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_rev Tc:Saos-2Untreated_Day28Br1- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse 0 3272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_rev Tc:Saos-2Untreated_Day28Br1- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse 1 3272 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep1%20%28B1%20T17%29.CNhs14194.12697-135D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep1 (B1 T17)_CNhs14194_12697-135D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12697-135D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br1-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep1B1T17_CNhs14194_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12697-135D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF561GIA ENCSR453RFW Peak bigBed 5 T-helper 1 cell male adult 24 years DNase peak 4 3273 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/44da7707-1378-4118-8091-a8f099f7392f/ENCFF561GIA.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 1 cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453RFW Peak\ track wgEncodeReg4Epigenetics_ENCFF561GIA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF478DPA ENCSR524RLU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFXAP RFXAP ENCSR524RLU signal 2 3273 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/00378ff5-0d9d-4daf-9c2a-46fe01aabc87/ENCFF478DPA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFXAP RFXAP ENCSR524RLU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR524RLU Signal\ track wgEncodeReg4TfChip_ENCFF478DPA\ type bigWig\ visibility full\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_fwd Tc:Saos-2Untreated_Day28Br2+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward 0 3273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_fwd Tc:Saos-2Untreated_Day28Br2+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward 1 3273 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br2+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF512RKL ENCSR453RFW Signal bigWig T-helper 1 cell male adult 24 years DNase signal 2 3274 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/2b861464-a870-47be-8f84-413787b69d4c/ENCFF512RKL.bigWig\ color 6,218,147\ longLabel T-helper 1 cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR453RFW Signal\ track wgEncodeReg4Epigenetics_ENCFF512RKL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF048VXC ENCSR525VAT Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB JUNB peaks 4 3274 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/f492fc04-4266-4b70-87e2-6714787f2173/ENCFF048VXC.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB JUNB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR525VAT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF048VXC\ type bigBed 5\ useScore 1\ visibility squish\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_rev Tc:Saos-2Untreated_Day28Br2- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse 0 3274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_rev Tc:Saos-2Untreated_Day28Br2- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse 1 3274 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep2%20%28B2%20T17%29.CNhs14195.12795-136F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep2 (B2 T17)_CNhs14195_12795-136F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12795-136F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br2-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep2B2T17_CNhs14195_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12795-136F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF730YQE ENCSR454UTH Peak bigBed 5 GM19452 ATAC peak 4 3275 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/3606c899-3baa-4397-8171-077bffd2f378/ENCFF730YQE.bigBed\ color 2,199,185\ longLabel GM19452 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR454UTH Peak\ track wgEncodeReg4Epigenetics_ENCFF730YQE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF965VAA ENCSR525VAT Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB JUNB ENCSR525VAT signal 2 3275 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/789bc1de-6205-416f-a990-0e33112e41c6/ENCFF965VAA.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUNB JUNB ENCSR525VAT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR525VAT Signal\ track wgEncodeReg4TfChip_ENCFF965VAA\ type bigWig\ visibility full\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_fwd Tc:Saos-2Untreated_Day28Br3+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward 0 3275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_fwd Tc:Saos-2Untreated_Day28Br3+ bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward 1 3275 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br3+\ subGroups sequenceTech=hCAGE category=timecourse strand=forward\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF095KQF ENCSR454UTH Signal bigWig GM19452 ATAC signal 2 3276 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/b42a493a-7d93-49cf-9ce5-1a514701ce22/ENCFF095KQF.bigWig\ color 2,199,185\ longLabel GM19452 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR454UTH Signal\ track wgEncodeReg4Epigenetics_ENCFF095KQF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF784LWO ENCSR525VXD Peak bigBed 5 Middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 3276 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/1ad02461-98a2-46c3-8ee7-9624ccb2e838/ENCFF784LWO.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR525VXD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF784LWO\ type bigBed 5\ useScore 1\ visibility squish\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_rev Tc:Saos-2Untreated_Day28Br3- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse 0 3276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel Tc:Saos-2Untreated_Day28Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_rev Tc:Saos-2Untreated_Day28Br3- bigWig Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse 1 3276 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Saos-2%20osteosarcoma%20cell%20line%2c%20untreated%20control%2c%20day28%2c%20biol_rep3%20%28B3%20T17%29.CNhs14196.12893-137H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Saos-2 osteosarcoma cell line, untreated control, day28, biol_rep3 (B3 T17)_CNhs14196_12893-137H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=12893-137H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel Tc:Saos-2Untreated_Day28Br3-\ subGroups sequenceTech=hCAGE category=timecourse strand=reverse\ track Saos2OsteosarcomaCellLineUntreatedControlDay28BiolRep3B3T17_CNhs14196_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:12893-137H4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_ctss_fwd AchillesTendonD2+ bigWig achilles tendon, donor2_CNhs13435_10292-104G4_forward 0 3277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AchillesTendonD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AchillesTendonDonor2_CNhs13435_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_tpm_fwd AchillesTendonD2+ bigWig achilles tendon, donor2_CNhs13435_10292-104G4_forward 1 3277 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AchillesTendonD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AchillesTendonDonor2_CNhs13435_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF611GCH ENCSR454VRA Peak bigBed 5 Small intestine tissue male child 3 years H3K27ac peak 4 3277 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/eb74f46c-8836-4fcd-853f-71c79d101260/ENCFF611GCH.bigBed\ color 181,145,0\ longLabel Small intestine tissue male child 3 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR454VRA Peak\ track wgEncodeReg4Epigenetics_ENCFF611GCH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF782LSR ENCSR525VXD Signal bigWig Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR525VXD signal 2 3277 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/baf33ef2-1ff7-4446-b1fd-ffd94069993d/ENCFF782LSR.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR525VXD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR525VXD Signal\ track wgEncodeReg4TfChip_ENCFF782LSR\ type bigWig\ visibility full\ AchillesTendonDonor2_CNhs13435_ctss_rev AchillesTendonD2- bigWig achilles tendon, donor2_CNhs13435_10292-104G4_reverse 0 3278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AchillesTendonD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AchillesTendonDonor2_CNhs13435_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ AchillesTendonDonor2_CNhs13435_tpm_rev AchillesTendonD2- bigWig achilles tendon, donor2_CNhs13435_10292-104G4_reverse 1 3278 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/achilles%20tendon%2c%20donor2.CNhs13435.10292-104G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel achilles tendon, donor2_CNhs13435_10292-104G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10292-104G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AchillesTendonD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AchillesTendonDonor2_CNhs13435_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10292-104G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF494RFU ENCSR454VRA Signal bigWig Small intestine tissue male child 3 years H3K27ac signal 2 3278 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/aca7774d-9eff-480b-b76a-50aea7a4fdf0/ENCFF494RFU.bigWig\ color 181,145,0\ longLabel Small intestine tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR454VRA Signal\ track wgEncodeReg4Epigenetics_ENCFF494RFU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF162FPR ENCSR525YFS Peak bigBed 5 HepG2 ZBTB40 peaks 4 3278 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/a473e5d9-72cf-4f40-a536-dee8168a35e0/ENCFF162FPR.bigBed\ labelFields none\ longLabel HepG2 ZBTB40 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR525YFS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF162FPR\ type bigBed 5\ useScore 1\ visibility squish\ AdiposeDonor1_CNhs13972_ctss_fwd AdiposeD1+ bigWig adipose, donor1_CNhs13972_10184-103D4_forward 0 3279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor1_CNhs13972_10184-103D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor1_CNhs13972_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_tpm_fwd AdiposeD1+ bigWig adipose, donor1_CNhs13972_10184-103D4_forward 1 3279 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor1_CNhs13972_10184-103D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor1_CNhs13972_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF975YTX ENCSR455GUW Peak bigBed 5 Peyer's patch tissue male adult 54 years DNase peak 4 3279 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/3c87d024-307e-48e0-bb0c-69dc2eb0d8bd/ENCFF975YTX.bigBed\ color 6,218,147\ labelFields none\ longLabel Peyer's patch tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR455GUW Peak\ track wgEncodeReg4Epigenetics_ENCFF975YTX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF762OAC ENCSR525YFS Signal bigWig HepG2 ZBTB40 ENCSR525YFS signal 2 3279 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/8178b229-45a0-48d4-891f-99d0892eaab0/ENCFF762OAC.bigWig\ color 137,152,82\ longLabel HepG2 ZBTB40 ENCSR525YFS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR525YFS Signal\ track wgEncodeReg4TfChip_ENCFF762OAC\ type bigWig\ visibility full\ AdiposeDonor1_CNhs13972_ctss_rev AdiposeD1- bigWig adipose, donor1_CNhs13972_10184-103D4_reverse 0 3280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor1_CNhs13972_10184-103D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor1_CNhs13972_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ AdiposeDonor1_CNhs13972_tpm_rev AdiposeD1- bigWig adipose, donor1_CNhs13972_10184-103D4_reverse 1 3280 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor1.CNhs13972.10184-103D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor1_CNhs13972_10184-103D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10184-103D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor1_CNhs13972_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10184-103D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF717OQE ENCSR455GUW Signal bigWig Peyer's patch tissue male adult 54 years DNase signal 2 3280 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/f17c0553-de59-438a-8754-ae567c699123/ENCFF717OQE.bigWig\ color 6,218,147\ longLabel Peyer's patch tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR455GUW Signal\ track wgEncodeReg4Epigenetics_ENCFF717OQE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF879PAY ENCSR527TPP Peak bigBed 5 Uterus tissue female adult (51 years) CTCF peaks 4 3280 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2018/12/07/a0cbb48e-3454-4c45-899b-a614c5ee4e48/ENCFF879PAY.bigBed\ labelFields none\ longLabel Uterus tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR527TPP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF879PAY\ type bigBed 5\ useScore 1\ visibility squish\ AdiposeDonor2_CNhs13973_ctss_fwd AdiposeD2+ bigWig adipose, donor2_CNhs13973_10185-103D5_forward 0 3281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor2_CNhs13973_10185-103D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor2_CNhs13973_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_tpm_fwd AdiposeD2+ bigWig adipose, donor2_CNhs13973_10185-103D5_forward 1 3281 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor2_CNhs13973_10185-103D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor2_CNhs13973_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF661QWW ENCSR456KDF Peak bigBed 5 Left lung tissue female embryo 108 days DNase peak 4 3281 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/2fc7dd32-5077-412d-a7e0-537efa867051/ENCFF661QWW.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR456KDF Peak\ track wgEncodeReg4Epigenetics_ENCFF661QWW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF046WEZ ENCSR527TPP Signal bigWig Uterus tissue female adult (51 years) CTCF ENCSR527TPP signal 2 3281 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e491a37c-d0dc-45ea-8f4e-59879bbbe61c/ENCFF046WEZ.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (51 years) CTCF ENCSR527TPP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR527TPP Signal\ track wgEncodeReg4TfChip_ENCFF046WEZ\ type bigWig\ visibility full\ AdiposeDonor2_CNhs13973_ctss_rev AdiposeD2- bigWig adipose, donor2_CNhs13973_10185-103D5_reverse 0 3282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor2_CNhs13973_10185-103D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor2_CNhs13973_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ AdiposeDonor2_CNhs13973_tpm_rev AdiposeD2- bigWig adipose, donor2_CNhs13973_10185-103D5_reverse 1 3282 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor2.CNhs13973.10185-103D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor2_CNhs13973_10185-103D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10185-103D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor2_CNhs13973_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10185-103D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF051QLC ENCSR456KDF Signal bigWig Left lung tissue female embryo 108 days DNase signal 2 3282 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/86e253ef-5ee7-4589-a7d2-a52ff163b46a/ENCFF051QLC.bigWig\ color 6,218,147\ longLabel Left lung tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR456KDF Signal\ track wgEncodeReg4Epigenetics_ENCFF051QLC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF854JLR ENCSR528PSI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HLF HLF peaks 4 3282 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/86774ed2-31bf-4614-98b6-6507dd3d0aaa/ENCFF854JLR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HLF HLF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR528PSI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF854JLR\ type bigBed 5\ useScore 1\ visibility squish\ AdiposeDonor3_CNhs13974_ctss_fwd AdiposeD3+ bigWig adipose, donor3_CNhs13974_10186-103D6_forward 0 3283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor3_CNhs13974_10186-103D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD3+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor3_CNhs13974_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_tpm_fwd AdiposeD3+ bigWig adipose, donor3_CNhs13974_10186-103D6_forward 1 3283 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor3_CNhs13974_10186-103D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD3+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor3_CNhs13974_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF207PNH ENCSR457FQI Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 3283 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5c2c2aec-9772-4558-a038-335b337b9ea8/ENCFF207PNH.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457FQI Peak\ track wgEncodeReg4Epigenetics_ENCFF207PNH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF314USV ENCSR528PSI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HLF HLF ENCSR528PSI signal 2 3283 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/952a7971-8067-4583-bf93-f5315c31bd37/ENCFF314USV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HLF HLF ENCSR528PSI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR528PSI Signal\ track wgEncodeReg4TfChip_ENCFF314USV\ type bigWig\ visibility full\ AdiposeDonor3_CNhs13974_ctss_rev AdiposeD3- bigWig adipose, donor3_CNhs13974_10186-103D6_reverse 0 3284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor3_CNhs13974_10186-103D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD3-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor3_CNhs13974_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ AdiposeDonor3_CNhs13974_tpm_rev AdiposeD3- bigWig adipose, donor3_CNhs13974_10186-103D6_reverse 1 3284 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor3.CNhs13974.10186-103D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor3_CNhs13974_10186-103D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10186-103D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD3-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor3_CNhs13974_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10186-103D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF975SNY ENCSR457FQI Signal bigWig CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 3284 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/198218bc-c8d3-4c5c-b0fd-a1271c047756/ENCFF975SNY.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457FQI Signal\ track wgEncodeReg4Epigenetics_ENCFF975SNY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF806CDY ENCSR529JYA Peak bigBed 5 HepG2 HCFC1 peaks 4 3284 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/456123d1-8ae2-432a-a560-25c683e4e3c0/ENCFF806CDY.bigBed\ labelFields none\ longLabel HepG2 HCFC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR529JYA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF806CDY\ type bigBed 5\ useScore 1\ visibility squish\ AdiposeDonor4_CNhs13975_ctss_fwd AdiposeD4+ bigWig adipose, donor4_CNhs13975_10187-103D7_forward 0 3285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose, donor4_CNhs13975_10187-103D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD4+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor4_CNhs13975_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_tpm_fwd AdiposeD4+ bigWig adipose, donor4_CNhs13975_10187-103D7_forward 1 3285 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose, donor4_CNhs13975_10187-103D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD4+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeDonor4_CNhs13975_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF394OQW ENCSR457ILW Peak bigBed 5 Small intestine tissue female embryo 91 days DNase peak 4 3285 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/99df2b15-d947-4ede-9806-d86e150b9a67/ENCFF394OQW.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue female embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457ILW Peak\ track wgEncodeReg4Epigenetics_ENCFF394OQW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF711IPM ENCSR529JYA Signal bigWig HepG2 HCFC1 ENCSR529JYA signal 2 3285 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/8c963d19-ed7d-440b-81b0-ae0660bd3f46/ENCFF711IPM.bigWig\ color 137,152,82\ longLabel HepG2 HCFC1 ENCSR529JYA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR529JYA Signal\ track wgEncodeReg4TfChip_ENCFF711IPM\ type bigWig\ visibility full\ AdiposeDonor4_CNhs13975_ctss_rev AdiposeD4- bigWig adipose, donor4_CNhs13975_10187-103D7_reverse 0 3286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose, donor4_CNhs13975_10187-103D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeD4-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor4_CNhs13975_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ AdiposeDonor4_CNhs13975_tpm_rev AdiposeD4- bigWig adipose, donor4_CNhs13975_10187-103D7_reverse 1 3286 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%2c%20donor4.CNhs13975.10187-103D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose, donor4_CNhs13975_10187-103D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10187-103D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeD4-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeDonor4_CNhs13975_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10187-103D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF894JGX ENCSR457ILW Signal bigWig Small intestine tissue female embryo 91 days DNase signal 2 3286 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/b4448ea4-e443-40bc-87c4-4c0194c7b641/ENCFF894JGX.bigWig\ color 6,218,147\ longLabel Small intestine tissue female embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457ILW Signal\ track wgEncodeReg4Epigenetics_ENCFF894JGX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF526NOJ ENCSR530ARJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAXIP1 PAXIP1 peaks 4 3286 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/9c95412c-a44b-40dc-ad61-592c1e79f01d/ENCFF526NOJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAXIP1 PAXIP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR530ARJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF526NOJ\ type bigBed 5\ useScore 1\ visibility squish\ AdiposeTissueAdultPool1_CNhs10615_ctss_fwd AdiposeTissueAdultPl1+ bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward 0 3287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeTissueAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeTissueAdultPool1_CNhs10615_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_tpm_fwd AdiposeTissueAdultPl1+ bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward 1 3287 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeTissueAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdiposeTissueAdultPool1_CNhs10615_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF070BSO ENCSR457JOG Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak 4 3287 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/28ca9edf-f71a-4ffe-ba1d-3087a17d5346/ENCFF070BSO.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457JOG Peak\ track wgEncodeReg4Epigenetics_ENCFF070BSO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF231ODX ENCSR530ARJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAXIP1 PAXIP1 ENCSR530ARJ signal 2 3287 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d0f5e2e2-ceaa-4a94-b100-4e10bac3b10f/ENCFF231ODX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAXIP1 PAXIP1 ENCSR530ARJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR530ARJ Signal\ track wgEncodeReg4TfChip_ENCFF231ODX\ type bigWig\ visibility full\ AdiposeTissueAdultPool1_CNhs10615_ctss_rev AdiposeTissueAdultPl1- bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse 0 3288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdiposeTissueAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeTissueAdultPool1_CNhs10615_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ AdiposeTissueAdultPool1_CNhs10615_tpm_rev AdiposeTissueAdultPl1- bigWig adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse 1 3288 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adipose%20tissue%2c%20adult%2c%20pool1.CNhs10615.10010-101C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adipose tissue, adult, pool1_CNhs10615_10010-101C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10010-101C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdiposeTissueAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdiposeTissueAdultPool1_CNhs10615_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10010-101C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF635EBG ENCSR457JOG Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal 2 3288 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/b09b1b57-66cd-406c-b520-d4799a51836a/ENCFF635EBG.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457JOG Signal\ track wgEncodeReg4Epigenetics_ENCFF635EBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF954SDY ENCSR530WIV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 peaks 4 3288 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/324a66f9-ffb2-4565-bcc4-63a09ebdf8f4/ENCFF954SDY.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR530WIV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF954SDY\ type bigBed 5\ useScore 1\ visibility squish\ AdrenalGlandAdultPool1_CNhs11793_ctss_fwd AdrenalGlandAdultPl1+ bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward 0 3289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdrenalGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdrenalGlandAdultPool1_CNhs11793_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_tpm_fwd AdrenalGlandAdultPl1+ bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward 1 3289 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdrenalGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AdrenalGlandAdultPool1_CNhs11793_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF522CHU ENCSR457RVC Peak bigBed 5 T-cell male adult 28 years DNase peak 4 3289 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/fe5e40e4-612a-4bce-a5da-77c866d6bdb0/ENCFF522CHU.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 28 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457RVC Peak\ track wgEncodeReg4Epigenetics_ENCFF522CHU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF258EIA ENCSR530WIV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 ENCSR530WIV signal 2 3289 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/cc0426ad-4c1b-4577-a604-8176cd0e83ee/ENCFF258EIA.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXP1 FOXP1 ENCSR530WIV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR530WIV Signal\ track wgEncodeReg4TfChip_ENCFF258EIA\ type bigWig\ visibility full\ AdrenalGlandAdultPool1_CNhs11793_ctss_rev AdrenalGlandAdultPl1- bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse 0 3290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AdrenalGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdrenalGlandAdultPool1_CNhs11793_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ AdrenalGlandAdultPool1_CNhs11793_tpm_rev AdrenalGlandAdultPl1- bigWig adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse 1 3290 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/adrenal%20gland%2c%20adult%2c%20pool1.CNhs11793.10081-102A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel adrenal gland, adult, pool1_CNhs11793_10081-102A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10081-102A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AdrenalGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AdrenalGlandAdultPool1_CNhs11793_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10081-102A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF814CKW ENCSR457RVC Signal bigWig T-cell male adult 28 years DNase signal 2 3290 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/1e7421ab-8caa-4307-8b13-e5447cf8f624/ENCFF814CKW.bigWig\ color 6,218,147\ longLabel T-cell male adult 28 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR457RVC Signal\ track wgEncodeReg4Epigenetics_ENCFF814CKW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF320EQC ENCSR530XQI Peak bigBed 5 K562 L3MBTL2 peaks 4 3290 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/cd39c926-7f40-431a-b743-cdffc0dc6425/ENCFF320EQC.bigBed\ labelFields none\ longLabel K562 L3MBTL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR530XQI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF320EQC\ type bigBed 5\ useScore 1\ visibility squish\ AmygdalaAdultDonor10196_CNhs13793_ctss_fwd AmygdalaAdultD10196+ bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_forward 0 3291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10196_CNhs13793_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_tpm_fwd AmygdalaAdultD10196+ bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_forward 1 3291 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10196_CNhs13793_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF130MWX ENCSR458AOS Peak bigBed 5 Adrenal gland tissue male adult 54 years DNase peak 4 3291 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/87b0a526-71dd-4352-91b1-1caa25a1616a/ENCFF130MWX.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458AOS Peak\ track wgEncodeReg4Epigenetics_ENCFF130MWX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF803AOB ENCSR530XQI Signal bigWig K562 L3MBTL2 ENCSR530XQI signal 2 3291 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/5041595d-bcdd-43c7-9811-b3117c004c87/ENCFF803AOB.bigWig\ color 254,75,173\ longLabel K562 L3MBTL2 ENCSR530XQI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR530XQI Signal\ track wgEncodeReg4TfChip_ENCFF803AOB\ type bigWig\ visibility full\ AmygdalaAdultDonor10196_CNhs13793_ctss_rev AmygdalaAdultD10196- bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse 0 3292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10196_CNhs13793_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10196_CNhs13793_tpm_rev AmygdalaAdultD10196- bigWig amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse 1 3292 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%20-%20adult%2c%20donor10196.CNhs13793.10167-103B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amygdala - adult, donor10196_CNhs13793_10167-103B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10167-103B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10196_CNhs13793_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10167-103B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF316SZE ENCSR458AOS Signal bigWig Adrenal gland tissue male adult 54 years DNase signal 2 3292 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/6ccd4035-3ded-4b91-9f51-d78fa64bf1b9/ENCFF316SZE.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458AOS Signal\ track wgEncodeReg4Epigenetics_ENCFF316SZE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF032KTL ENCSR531VIJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER3 MIER3 peaks 4 3292 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/63fcd707-dac0-42a4-853a-12171ac35c15/ENCFF032KTL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER3 MIER3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR531VIJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF032KTL\ type bigBed 5\ useScore 1\ visibility squish\ AmygdalaAdultDonor10252_CNhs12311_ctss_fwd AmygdalaAdultD10252+ bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_forward 0 3293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10252_CNhs12311_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_tpm_fwd AmygdalaAdultD10252+ bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_forward 1 3293 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaAdultDonor10252_CNhs12311_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF039NLW ENCSR458LIB Peak bigBed 5 MM.1S DNase peak 4 3293 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/1dadfaf5-8a80-469a-ac98-8ba9250b9f12/ENCFF039NLW.bigBed\ color 6,218,147\ labelFields none\ longLabel MM.1S DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458LIB Peak\ track wgEncodeReg4Epigenetics_ENCFF039NLW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF409QFJ ENCSR531VIJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER3 MIER3 ENCSR531VIJ signal 2 3293 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1b1eef40-e573-4e05-a9ae-a68ab55d7534/ENCFF409QFJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIER3 MIER3 ENCSR531VIJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR531VIJ Signal\ track wgEncodeReg4TfChip_ENCFF409QFJ\ type bigWig\ visibility full\ AmygdalaAdultDonor10252_CNhs12311_ctss_rev AmygdalaAdultD10252- bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse 0 3294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10252_CNhs12311_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ AmygdalaAdultDonor10252_CNhs12311_tpm_rev AmygdalaAdultD10252- bigWig amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse 1 3294 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20adult%2c%20donor10252.CNhs12311.10151-102I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amygdala, adult, donor10252_CNhs12311_10151-102I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10151-102I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaAdultDonor10252_CNhs12311_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10151-102I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF735XLO ENCSR458LIB Signal bigWig MM.1S DNase signal 2 3294 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/697f32df-f141-4417-82c2-9e0416803296/ENCFF735XLO.bigWig\ color 6,218,147\ longLabel MM.1S DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458LIB Signal\ track wgEncodeReg4Epigenetics_ENCFF735XLO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF447IXE ENCSR532EMP Peak bigBed 5 K562 stably expressing ZNF740 ZNF740 peaks 4 3294 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/c512bf06-7746-4678-8377-f4e5f0297355/ENCFF447IXE.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF740 ZNF740 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR532EMP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF447IXE\ type bigBed 5\ useScore 1\ visibility squish\ AmygdalaNewbornDonor10223_CNhs14078_ctss_fwd AmygdalaNbD1D10223+ bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward 0 3295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaNbD1D10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaNewbornDonor10223_CNhs14078_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_tpm_fwd AmygdalaNbD1D10223+ bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward 1 3295 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaNbD1D10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AmygdalaNewbornDonor10223_CNhs14078_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF910FNQ ENCSR458PYQ Peak bigBed 5 Type B pancreatic cell CTCF peak 4 3295 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/1f9b3976-3c3b-4fa6-a8fd-d38a59013c8d/ENCFF910FNQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Type B pancreatic cell CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458PYQ Peak\ track wgEncodeReg4Epigenetics_ENCFF910FNQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF408LCW ENCSR532EMP Signal bigWig K562 stably expressing ZNF740 ZNF740 ENCSR532EMP signal 2 3295 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/c1a8a372-5fdc-4fd4-8058-92aa0ef48948/ENCFF408LCW.bigWig\ color 254,75,173\ longLabel K562 stably expressing ZNF740 ZNF740 ENCSR532EMP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR532EMP Signal\ track wgEncodeReg4TfChip_ENCFF408LCW\ type bigWig\ visibility full\ AmygdalaNewbornDonor10223_CNhs14078_ctss_rev AmygdalaNbD1D10223- bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse 0 3296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AmygdalaNbD1D10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaNewbornDonor10223_CNhs14078_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ AmygdalaNewbornDonor10223_CNhs14078_tpm_rev AmygdalaNbD1D10223- bigWig amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse 1 3296 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/amygdala%2c%20newborn%2c%20donor10223.CNhs14078.10360-105E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel amygdala, newborn, donor10223_CNhs14078_10360-105E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10360-105E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AmygdalaNbD1D10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AmygdalaNewbornDonor10223_CNhs14078_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10360-105E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF973VNM ENCSR458PYQ Signal bigWig Type B pancreatic cell CTCF signal 2 3296 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/8e05bf0c-b4f5-4a72-adb9-7fb8cbeef36c/ENCFF973VNM.bigWig\ color 0,176,240\ longLabel Type B pancreatic cell CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458PYQ Signal\ track wgEncodeReg4Epigenetics_ENCFF973VNM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF741URT ENCSR532KTI Peak bigBed 5 K562 stably expressing GTF2E2 GTF2E2 peaks 4 3296 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/1b8cb8fe-c74a-4d71-86cf-23c3ffa566f8/ENCFF741URT.bigBed\ labelFields none\ longLabel K562 stably expressing GTF2E2 GTF2E2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR532KTI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF741URT\ type bigBed 5\ useScore 1\ visibility squish\ AortaAdultPool1_CNhs11760_ctss_fwd AortaAdultPl1+ bigWig aorta, adult, pool1_CNhs11760_10052-101G7_forward 0 3297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AortaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AortaAdultPool1_CNhs11760_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_tpm_fwd AortaAdultPl1+ bigWig aorta, adult, pool1_CNhs11760_10052-101G7_forward 1 3297 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AortaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AortaAdultPool1_CNhs11760_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF707CJN ENCSR458RRZ Peak bigBed 5 Nonobstructive coronary artery disease liver tissue male adult 32 years H3K27ac peak 4 3297 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/1d9dcb74-f1cd-475b-aebf-05485ad46b45/ENCFF707CJN.bigBed\ color 181,145,0\ longLabel Nonobstructive coronary artery disease liver tissue male adult 32 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458RRZ Peak\ track wgEncodeReg4Epigenetics_ENCFF707CJN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF201EBU ENCSR532KTI Signal bigWig K562 stably expressing GTF2E2 GTF2E2 ENCSR532KTI signal 2 3297 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/2963d8c4-2eac-4815-a210-c9f4c2e26a16/ENCFF201EBU.bigWig\ color 254,75,173\ longLabel K562 stably expressing GTF2E2 GTF2E2 ENCSR532KTI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR532KTI Signal\ track wgEncodeReg4TfChip_ENCFF201EBU\ type bigWig\ visibility full\ AortaAdultPool1_CNhs11760_ctss_rev AortaAdultPl1- bigWig aorta, adult, pool1_CNhs11760_10052-101G7_reverse 0 3298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AortaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AortaAdultPool1_CNhs11760_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ AortaAdultPool1_CNhs11760_tpm_rev AortaAdultPl1- bigWig aorta, adult, pool1_CNhs11760_10052-101G7_reverse 1 3298 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/aorta%2c%20adult%2c%20pool1.CNhs11760.10052-101G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel aorta, adult, pool1_CNhs11760_10052-101G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10052-101G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AortaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AortaAdultPool1_CNhs11760_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10052-101G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF218ECO ENCSR458RRZ Signal bigWig Nonobstructive coronary artery disease liver tissue male adult 32 years H3K27ac signal 2 3298 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/e223bc6e-7287-4196-9527-0ffd4b183700/ENCFF218ECO.bigWig\ color 181,145,0\ longLabel Nonobstructive coronary artery disease liver tissue male adult 32 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458RRZ Signal\ track wgEncodeReg4Epigenetics_ENCFF218ECO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF570VWN ENCSR532WFC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB14 ZBTB14 peaks 4 3298 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/694a2ab6-ce41-45bb-8320-5561e2e468aa/ENCFF570VWN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB14 ZBTB14 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR532WFC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF570VWN\ type bigBed 5\ useScore 1\ visibility squish\ AppendixAdult_CNhs12842_ctss_fwd AppendixAdult+ bigWig appendix, adult_CNhs12842_10189-103D9_forward 0 3299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel appendix, adult_CNhs12842_10189-103D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AppendixAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AppendixAdult_CNhs12842_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_tpm_fwd AppendixAdult+ bigWig appendix, adult_CNhs12842_10189-103D9_forward 1 3299 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel appendix, adult_CNhs12842_10189-103D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AppendixAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track AppendixAdult_CNhs12842_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF338FZM ENCSR458TOW Peak bigBed 5 Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac peak 4 3299 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/be2bd10e-2cd1-4751-a552-3da42ee2b423/ENCFF338FZM.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458TOW Peak\ track wgEncodeReg4Epigenetics_ENCFF338FZM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF612RHB ENCSR532WFC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB14 ZBTB14 ENCSR532WFC signal 2 3299 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ecd24f71-110a-4a28-b5b4-64d4f875ff2a/ENCFF612RHB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB14 ZBTB14 ENCSR532WFC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR532WFC Signal\ track wgEncodeReg4TfChip_ENCFF612RHB\ type bigWig\ visibility full\ AppendixAdult_CNhs12842_ctss_rev AppendixAdult- bigWig appendix, adult_CNhs12842_10189-103D9_reverse 0 3300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel appendix, adult_CNhs12842_10189-103D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel AppendixAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AppendixAdult_CNhs12842_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ AppendixAdult_CNhs12842_tpm_rev AppendixAdult- bigWig appendix, adult_CNhs12842_10189-103D9_reverse 1 3300 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/appendix%2c%20adult.CNhs12842.10189-103D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel appendix, adult_CNhs12842_10189-103D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10189-103D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel AppendixAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track AppendixAdult_CNhs12842_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10189-103D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF311WDO ENCSR458TOW Signal bigWig Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac signal 2 3300 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/a5b6410e-9ae8-441d-8c24-e940a9bea0b6/ENCFF311WDO.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458TOW Signal\ track wgEncodeReg4Epigenetics_ENCFF311WDO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF701IZH ENCSR534VHI Peak bigBed 5 GM23338 originated from GM23248 ETS1 peaks 4 3300 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/4a056f6e-c2f1-4e75-ad23-0e1a759c76f8/ENCFF701IZH.bigBed\ labelFields none\ longLabel GM23338 originated from GM23248 ETS1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR534VHI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF701IZH\ type bigBed 5\ useScore 1\ visibility squish\ ArteryAdult_CNhs12843_ctss_fwd ArteryAdult+ bigWig artery, adult_CNhs12843_10190-103E1_forward 0 3301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel artery, adult_CNhs12843_10190-103E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ArteryAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ArteryAdult_CNhs12843_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_tpm_fwd ArteryAdult+ bigWig artery, adult_CNhs12843_10190-103E1_forward 1 3301 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel artery, adult_CNhs12843_10190-103E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ArteryAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ArteryAdult_CNhs12843_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF631AEF ENCSR458WIH Peak bigBed 5 Liver tissue male adult 31 years H3K4me3 peak 4 3301 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/43297839-a74c-42ff-aa11-bb70afe0c726/ENCFF631AEF.bigBed\ color 255,0,0\ longLabel Liver tissue male adult 31 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458WIH Peak\ track wgEncodeReg4Epigenetics_ENCFF631AEF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF668JYW ENCSR534VHI Signal bigWig GM23338 originated from GM23248 ETS1 ENCSR534VHI signal 2 3301 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/b049759f-ad9a-43d8-ae31-e341fccc1efc/ENCFF668JYW.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 ETS1 ENCSR534VHI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR534VHI Signal\ track wgEncodeReg4TfChip_ENCFF668JYW\ type bigWig\ visibility full\ ArteryAdult_CNhs12843_ctss_rev ArteryAdult- bigWig artery, adult_CNhs12843_10190-103E1_reverse 0 3302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel artery, adult_CNhs12843_10190-103E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ArteryAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ArteryAdult_CNhs12843_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ ArteryAdult_CNhs12843_tpm_rev ArteryAdult- bigWig artery, adult_CNhs12843_10190-103E1_reverse 1 3302 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/artery%2c%20adult.CNhs12843.10190-103E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel artery, adult_CNhs12843_10190-103E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10190-103E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ArteryAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ArteryAdult_CNhs12843_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10190-103E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF053IVC ENCSR458WIH Signal bigWig Liver tissue male adult 31 years H3K4me3 signal 2 3302 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8b331e5e-df63-4d88-b6a7-e1e7b929e231/ENCFF053IVC.bigWig\ color 255,0,0\ longLabel Liver tissue male adult 31 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR458WIH Signal\ track wgEncodeReg4Epigenetics_ENCFF053IVC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF446EIF ENCSR535DIA Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS2 GLIS2 peaks 4 3302 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/b3efb85c-d25c-4af4-a4ea-7e362c0ea980/ENCFF446EIF.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS2 GLIS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR535DIA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF446EIF\ type bigBed 5\ useScore 1\ visibility squish\ BladderAdultPool1_CNhs10616_ctss_fwd BladderAdultPl1+ bigWig bladder, adult, pool1_CNhs10616_10011-101C2_forward 0 3303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BladderAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BladderAdultPool1_CNhs10616_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_tpm_fwd BladderAdultPl1+ bigWig bladder, adult, pool1_CNhs10616_10011-101C2_forward 1 3303 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BladderAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BladderAdultPool1_CNhs10616_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF826WEN ENCSR459PVP Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 3303 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/dbab02ad-2161-4b81-aa36-39c0c69925f4/ENCFF826WEN.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR459PVP Peak\ track wgEncodeReg4Epigenetics_ENCFF826WEN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF652UZS ENCSR535DIA Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS2 GLIS2 ENCSR535DIA signal 2 3303 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/f3e31a37-9536-43a8-9419-8bc57fc20766/ENCFF652UZS.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLIS2 GLIS2 ENCSR535DIA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR535DIA Signal\ track wgEncodeReg4TfChip_ENCFF652UZS\ type bigWig\ visibility full\ BladderAdultPool1_CNhs10616_ctss_rev BladderAdultPl1- bigWig bladder, adult, pool1_CNhs10616_10011-101C2_reverse 0 3304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BladderAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BladderAdultPool1_CNhs10616_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ BladderAdultPool1_CNhs10616_tpm_rev BladderAdultPl1- bigWig bladder, adult, pool1_CNhs10616_10011-101C2_reverse 1 3304 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bladder%2c%20adult%2c%20pool1.CNhs10616.10011-101C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bladder, adult, pool1_CNhs10616_10011-101C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10011-101C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BladderAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BladderAdultPool1_CNhs10616_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10011-101C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF839JKY ENCSR459PVP Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 3304 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/ffc76352-4b97-4794-9f59-43492cbf3686/ENCFF839JKY.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR459PVP Signal\ track wgEncodeReg4Epigenetics_ENCFF839JKY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF233EFX ENCSR536CBU Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB9 ZBTB9 peaks 4 3304 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2e54a92b-3263-4b02-b125-6fafa96af89a/ENCFF233EFX.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB9 ZBTB9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR536CBU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF233EFX\ type bigBed 5\ useScore 1\ visibility squish\ BloodAdultPool1_CNhs11761_ctss_fwd BloodAdultPl1+ bigWig blood, adult, pool1_CNhs11761_10053-101G8_forward 0 3305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BloodAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BloodAdultPool1_CNhs11761_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_tpm_fwd BloodAdultPl1+ bigWig blood, adult, pool1_CNhs11761_10053-101G8_forward 1 3305 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BloodAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BloodAdultPool1_CNhs11761_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF821XVN ENCSR460LGH Peak bigBed 5 C4-2B CTCF peak 4 3305 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/19b0c8ee-e69c-42e4-8c5a-7ebaf45da136/ENCFF821XVN.bigBed\ color 0,176,240\ labelFields none\ longLabel C4-2B CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR460LGH Peak\ track wgEncodeReg4Epigenetics_ENCFF821XVN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF178FEN ENCSR536CBU Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB9 ZBTB9 ENCSR536CBU signal 2 3305 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/0a763eed-4bb0-42e0-b875-0d5d4ba333fc/ENCFF178FEN.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB9 ZBTB9 ENCSR536CBU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR536CBU Signal\ track wgEncodeReg4TfChip_ENCFF178FEN\ type bigWig\ visibility full\ BloodAdultPool1_CNhs11761_ctss_rev BloodAdultPl1- bigWig blood, adult, pool1_CNhs11761_10053-101G8_reverse 0 3306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BloodAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BloodAdultPool1_CNhs11761_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ BloodAdultPool1_CNhs11761_tpm_rev BloodAdultPl1- bigWig blood, adult, pool1_CNhs11761_10053-101G8_reverse 1 3306 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/blood%2c%20adult%2c%20pool1.CNhs11761.10053-101G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel blood, adult, pool1_CNhs11761_10053-101G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10053-101G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BloodAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BloodAdultPool1_CNhs11761_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10053-101G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF478SCD ENCSR460LGH Signal bigWig C4-2B CTCF signal 2 3306 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7bc22980-76a6-4394-a801-a426c58d8b89/ENCFF478SCD.bigWig\ color 0,176,240\ longLabel C4-2B CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR460LGH Signal\ track wgEncodeReg4Epigenetics_ENCFF478SCD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF481VFR ENCSR540LPD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF839 ZNF839 peaks 4 3306 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/dd008c81-7c3e-4b46-9eea-d27f0629dfce/ENCFF481VFR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF839 ZNF839 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR540LPD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF481VFR\ type bigBed 5\ useScore 1\ visibility squish\ BoneMarrowAdult_CNhs12845_ctss_fwd BoneMarrowAdult+ bigWig bone marrow, adult_CNhs12845_10192-103E3_forward 0 3307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel bone marrow, adult_CNhs12845_10192-103E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BoneMarrowAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BoneMarrowAdult_CNhs12845_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_tpm_fwd BoneMarrowAdult+ bigWig bone marrow, adult_CNhs12845_10192-103E3_forward 1 3307 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel bone marrow, adult_CNhs12845_10192-103E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BoneMarrowAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BoneMarrowAdult_CNhs12845_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF018CKB ENCSR461GYN Peak bigBed 5 Middle frontal area 46 tissue female adult 78 years H3K27ac peak 4 3307 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/f25e7f86-6482-4e6e-b80a-7cc5a5c12fb6/ENCFF018CKB.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 78 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR461GYN Peak\ track wgEncodeReg4Epigenetics_ENCFF018CKB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF323SFU ENCSR540LPD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF839 ZNF839 ENCSR540LPD signal 2 3307 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/a4ca95eb-029d-4766-9e25-e565950af955/ENCFF323SFU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF839 ZNF839 ENCSR540LPD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR540LPD Signal\ track wgEncodeReg4TfChip_ENCFF323SFU\ type bigWig\ visibility full\ BoneMarrowAdult_CNhs12845_ctss_rev BoneMarrowAdult- bigWig bone marrow, adult_CNhs12845_10192-103E3_reverse 0 3308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel bone marrow, adult_CNhs12845_10192-103E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BoneMarrowAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BoneMarrowAdult_CNhs12845_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ BoneMarrowAdult_CNhs12845_tpm_rev BoneMarrowAdult- bigWig bone marrow, adult_CNhs12845_10192-103E3_reverse 1 3308 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/bone%20marrow%2c%20adult.CNhs12845.10192-103E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel bone marrow, adult_CNhs12845_10192-103E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10192-103E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BoneMarrowAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BoneMarrowAdult_CNhs12845_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10192-103E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF014NIB ENCSR461GYN Signal bigWig Middle frontal area 46 tissue female adult 78 years H3K27ac signal 2 3308 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/17f2fddc-cd55-4298-b3ae-88662bb581e4/ENCFF014NIB.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 78 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR461GYN Signal\ track wgEncodeReg4Epigenetics_ENCFF014NIB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF575DMG ENCSR541AMF Peak bigBed 5 SK-N-SH CTCF peaks 4 3308 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/6d287eda-48ba-463f-a20c-1571ea52da77/ENCFF575DMG.bigBed\ labelFields none\ longLabel SK-N-SH CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR541AMF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF575DMG\ type bigBed 5\ useScore 1\ visibility squish\ BrainAdultDonor1_CNhs11796_ctss_fwd BrainAdultD1+ bigWig brain, adult, donor1_CNhs11796_10084-102B3_forward 0 3309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultDonor1_CNhs11796_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_tpm_fwd BrainAdultD1+ bigWig brain, adult, donor1_CNhs11796_10084-102B3_forward 1 3309 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultDonor1_CNhs11796_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF464YKJ ENCSR461QMZ Peak bigBed 5 Multiple sclerosis IgD-negative memory B cell H3K4me3 peak 4 3309 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/45de7846-be81-4378-9622-ae918ce9dd0e/ENCFF464YKJ.bigBed\ color 255,0,0\ longLabel Multiple sclerosis IgD-negative memory B cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR461QMZ Peak\ track wgEncodeReg4Epigenetics_ENCFF464YKJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF850MLW ENCSR541AMF Signal bigWig SK-N-SH CTCF ENCSR541AMF signal 2 3309 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/c063a60b-6b24-4582-ae1f-d9f66b71bad2/ENCFF850MLW.bigWig\ color 155,155,18\ longLabel SK-N-SH CTCF ENCSR541AMF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR541AMF Signal\ track wgEncodeReg4TfChip_ENCFF850MLW\ type bigWig\ visibility full\ BrainAdultDonor1_CNhs11796_ctss_rev BrainAdultD1- bigWig brain, adult, donor1_CNhs11796_10084-102B3_reverse 0 3310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultDonor1_CNhs11796_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ BrainAdultDonor1_CNhs11796_tpm_rev BrainAdultD1- bigWig brain, adult, donor1_CNhs11796_10084-102B3_reverse 1 3310 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20donor1.CNhs11796.10084-102B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel brain, adult, donor1_CNhs11796_10084-102B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10084-102B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultDonor1_CNhs11796_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10084-102B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF431VVA ENCSR461QMZ Signal bigWig Multiple sclerosis IgD-negative memory B cell H3K4me3 signal 2 3310 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/c5c34f37-74c6-4022-a637-8089ca8a21ec/ENCFF431VVA.bigWig\ color 255,0,0\ longLabel Multiple sclerosis IgD-negative memory B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR461QMZ Signal\ track wgEncodeReg4Epigenetics_ENCFF431VVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF815XUD ENCSR541AOQ Peak bigBed 5 A549 PHF8 peaks 4 3310 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/cf76ce93-3d97-4abe-9b1e-5d1f2d21e64a/ENCFF815XUD.bigBed\ labelFields none\ longLabel A549 PHF8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR541AOQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF815XUD\ type bigBed 5\ useScore 1\ visibility squish\ BrainAdultPool1_CNhs10617_ctss_fwd BrainAdultPl1+ bigWig brain, adult, pool1_CNhs10617_10012-101C3_forward 0 3311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultPool1_CNhs10617_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_tpm_fwd BrainAdultPl1+ bigWig brain, adult, pool1_CNhs10617_10012-101C3_forward 1 3311 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainAdultPool1_CNhs10617_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF558APA ENCSR461VHZ Peak bigBed 5 Astrocyte CTCF peak 4 3311 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2bf52448-4919-4733-ab76-2edb945f77a5/ENCFF558APA.bigBed\ color 0,176,240\ labelFields none\ longLabel Astrocyte CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR461VHZ Peak\ track wgEncodeReg4Epigenetics_ENCFF558APA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF526YPF ENCSR541AOQ Signal bigWig A549 PHF8 ENCSR541AOQ signal 2 3311 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d8a28370-8e88-4315-890a-a3724f8d3ed9/ENCFF526YPF.bigWig\ color 130,163,45\ longLabel A549 PHF8 ENCSR541AOQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR541AOQ Signal\ track wgEncodeReg4TfChip_ENCFF526YPF\ type bigWig\ visibility full\ BrainAdultPool1_CNhs10617_ctss_rev BrainAdultPl1- bigWig brain, adult, pool1_CNhs10617_10012-101C3_reverse 0 3312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultPool1_CNhs10617_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ BrainAdultPool1_CNhs10617_tpm_rev BrainAdultPl1- bigWig brain, adult, pool1_CNhs10617_10012-101C3_reverse 1 3312 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20adult%2c%20pool1.CNhs10617.10012-101C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel brain, adult, pool1_CNhs10617_10012-101C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10012-101C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainAdultPool1_CNhs10617_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10012-101C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF569HGW ENCSR461VHZ Signal bigWig Astrocyte CTCF signal 2 3312 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/b7f42bfc-cddf-476a-9752-f124047dafaa/ENCFF569HGW.bigWig\ color 0,176,240\ longLabel Astrocyte CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR461VHZ Signal\ track wgEncodeReg4Epigenetics_ENCFF569HGW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF371EPR ENCSR541WQI Peak bigBed 5 A549 MAFK peaks 4 3312 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/c09f594e-002c-4ec5-b301-18e642b3aa28/ENCFF371EPR.bigBed\ labelFields none\ longLabel A549 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR541WQI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF371EPR\ type bigBed 5\ useScore 1\ visibility squish\ BrainFetalPool1_CNhs11797_ctss_fwd BrainFetalPl1+ bigWig brain, fetal, pool1_CNhs11797_10085-102B4_forward 0 3313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainFetalPool1_CNhs11797_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_tpm_fwd BrainFetalPl1+ bigWig brain, fetal, pool1_CNhs11797_10085-102B4_forward 1 3313 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BrainFetalPool1_CNhs11797_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF074PCI ENCSR462XTM Peak bigBed 5 Sigmoid colon tissue female adult 51 years DNase peak 4 3313 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/0008e0ae-1d94-4248-b562-dccd6cb031ed/ENCFF074PCI.bigBed\ color 6,218,147\ labelFields none\ longLabel Sigmoid colon tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR462XTM Peak\ track wgEncodeReg4Epigenetics_ENCFF074PCI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF362HUT ENCSR541WQI Signal bigWig A549 MAFK ENCSR541WQI signal 2 3313 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/808cb1af-2a7a-4e7f-ae48-23dd3a051668/ENCFF362HUT.bigWig\ color 130,163,45\ longLabel A549 MAFK ENCSR541WQI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR541WQI Signal\ track wgEncodeReg4TfChip_ENCFF362HUT\ type bigWig\ visibility full\ BrainFetalPool1_CNhs11797_ctss_rev BrainFetalPl1- bigWig brain, fetal, pool1_CNhs11797_10085-102B4_reverse 0 3314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BrainFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainFetalPool1_CNhs11797_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ BrainFetalPool1_CNhs11797_tpm_rev BrainFetalPl1- bigWig brain, fetal, pool1_CNhs11797_10085-102B4_reverse 1 3314 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/brain%2c%20fetal%2c%20pool1.CNhs11797.10085-102B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel brain, fetal, pool1_CNhs11797_10085-102B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10085-102B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BrainFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BrainFetalPool1_CNhs11797_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10085-102B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF749HRV ENCSR462XTM Signal bigWig Sigmoid colon tissue female adult 51 years DNase signal 2 3314 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/60eaeba7-f419-4d76-9454-ac55d7c3291a/ENCFF749HRV.bigWig\ color 6,218,147\ longLabel Sigmoid colon tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR462XTM Signal\ track wgEncodeReg4Epigenetics_ENCFF749HRV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF818EFA ENCSR542FLV Peak bigBed 5 GM12878 ZBTB33 peaks 4 3314 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/548d0726-67e9-4e50-9eca-bf3091680d53/ENCFF818EFA.bigBed\ labelFields none\ longLabel GM12878 ZBTB33 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR542FLV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF818EFA\ type bigBed 5\ useScore 1\ visibility squish\ BreastAdultDonor1_CNhs11792_ctss_fwd BreastAdultD1+ bigWig breast, adult, donor1_CNhs11792_10080-102A8_forward 0 3315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BreastAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BreastAdultDonor1_CNhs11792_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_tpm_fwd BreastAdultD1+ bigWig breast, adult, donor1_CNhs11792_10080-102A8_forward 1 3315 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BreastAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track BreastAdultDonor1_CNhs11792_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF675EKQ ENCSR463NAD Peak bigBed 5 Esophagus squamous epithelium tissue male adult 54 years H3K27ac peak 4 3315 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f0d20de6-b66d-4aea-beee-d56a5ddc6692/ENCFF675EKQ.bigBed\ color 181,145,0\ longLabel Esophagus squamous epithelium tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR463NAD Peak\ track wgEncodeReg4Epigenetics_ENCFF675EKQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF197JUC ENCSR542FLV Signal bigWig GM12878 ZBTB33 ENCSR542FLV signal 2 3315 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ac50d4cb-a949-4ad4-8fa4-5a154158767f/ENCFF197JUC.bigWig\ color 254,75,173\ longLabel GM12878 ZBTB33 ENCSR542FLV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR542FLV Signal\ track wgEncodeReg4TfChip_ENCFF197JUC\ type bigWig\ visibility full\ BreastAdultDonor1_CNhs11792_ctss_rev BreastAdultD1- bigWig breast, adult, donor1_CNhs11792_10080-102A8_reverse 0 3316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel BreastAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BreastAdultDonor1_CNhs11792_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ BreastAdultDonor1_CNhs11792_tpm_rev BreastAdultD1- bigWig breast, adult, donor1_CNhs11792_10080-102A8_reverse 1 3316 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/breast%2c%20adult%2c%20donor1.CNhs11792.10080-102A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel breast, adult, donor1_CNhs11792_10080-102A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10080-102A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel BreastAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track BreastAdultDonor1_CNhs11792_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10080-102A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF628RBH ENCSR463NAD Signal bigWig Esophagus squamous epithelium tissue male adult 54 years H3K27ac signal 2 3316 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/85fad69d-0d0f-4ea6-bc74-4c662cf05d74/ENCFF628RBH.bigWig\ color 181,145,0\ longLabel Esophagus squamous epithelium tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR463NAD Signal\ track wgEncodeReg4Epigenetics_ENCFF628RBH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF030RSJ ENCSR542PZA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF490 ZNF490 peaks 4 3316 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/1fc45074-91be-4984-b699-e4a6c17514ae/ENCFF030RSJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF490 ZNF490 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR542PZA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF030RSJ\ type bigBed 5\ useScore 1\ visibility squish\ CaudateNucleusAdultDonor10196_CNhs13802_ctss_fwd CaudateNucleusAdultD10196+ bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward 0 3317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10196_CNhs13802_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_tpm_fwd CaudateNucleusAdultD10196+ bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward 1 3317 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10196_CNhs13802_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF654BFF ENCSR463XCZ Peak bigBed 5 Upper lobe of left lung tissue male adult 54 years CTCF peak 4 3317 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/bfe8f1c3-10c2-4133-92ff-9fa1004be8f2/ENCFF654BFF.bigBed\ color 0,176,240\ labelFields none\ longLabel Upper lobe of left lung tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR463XCZ Peak\ track wgEncodeReg4Epigenetics_ENCFF654BFF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF400IPA ENCSR542PZA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF490 ZNF490 ENCSR542PZA signal 2 3317 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/cebd9403-722f-451d-af47-4c462020a540/ENCFF400IPA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF490 ZNF490 ENCSR542PZA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR542PZA Signal\ track wgEncodeReg4TfChip_ENCFF400IPA\ type bigWig\ visibility full\ CaudateNucleusAdultDonor10196_CNhs13802_ctss_rev CaudateNucleusAdultD10196- bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse 0 3318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10196_CNhs13802_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10196_CNhs13802_tpm_rev CaudateNucleusAdultD10196- bigWig caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse 1 3318 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%20-%20adult%2c%20donor10196.CNhs13802.10177-103C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus - adult, donor10196_CNhs13802_10177-103C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10177-103C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10196_CNhs13802_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10177-103C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF750ENA ENCSR463XCZ Signal bigWig Upper lobe of left lung tissue male adult 54 years CTCF signal 2 3318 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/2e94ad77-faaa-433f-9b29-ab8808dc2bb1/ENCFF750ENA.bigWig\ color 0,176,240\ longLabel Upper lobe of left lung tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR463XCZ Signal\ track wgEncodeReg4Epigenetics_ENCFF750ENA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF213SXV ENCSR542SCB Peak bigBed 5 Peyer's patch tissue female adult (51 years) CTCF peaks 4 3318 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/ff6cbdc1-3d9e-432d-bc9e-542c14d00994/ENCFF213SXV.bigBed\ labelFields none\ longLabel Peyer's patch tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR542SCB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF213SXV\ type bigBed 5\ useScore 1\ visibility squish\ CaudateNucleusAdultDonor10252_CNhs12321_ctss_fwd CaudateNucleusAdultD10252+ bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward 0 3319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10252_CNhs12321_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_tpm_fwd CaudateNucleusAdultD10252+ bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward 1 3319 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10252_CNhs12321_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF359TVQ ENCSR464DKE Peak bigBed 5 Loucy CTCF peak 4 3319 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/ce1d36c3-6398-4519-b917-e858999796e1/ENCFF359TVQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Loucy CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR464DKE Peak\ track wgEncodeReg4Epigenetics_ENCFF359TVQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF987CTM ENCSR542SCB Signal bigWig Peyer's patch tissue female adult (51 years) CTCF ENCSR542SCB signal 2 3319 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9791c354-df97-442c-ade2-e7105996e742/ENCFF987CTM.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (51 years) CTCF ENCSR542SCB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR542SCB Signal\ track wgEncodeReg4TfChip_ENCFF987CTM\ type bigWig\ visibility full\ CaudateNucleusAdultDonor10252_CNhs12321_ctss_rev CaudateNucleusAdultD10252- bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse 0 3320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10252_CNhs12321_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10252_CNhs12321_tpm_rev CaudateNucleusAdultD10252- bigWig caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse 1 3320 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10252.CNhs12321.10164-103B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10252_CNhs12321_10164-103B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10164-103B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10252_CNhs12321_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10164-103B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF699SOM ENCSR464DKE Signal bigWig Loucy CTCF signal 2 3320 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/3b62920a-4735-40da-8cd2-48177cea930d/ENCFF699SOM.bigWig\ color 0,176,240\ longLabel Loucy CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR464DKE Signal\ track wgEncodeReg4Epigenetics_ENCFF699SOM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF878QAY ENCSR543BNN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISX ISX peaks 4 3320 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/0fd9cba5-fdc3-418f-b2b2-bd47a33e4df2/ENCFF878QAY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISX ISX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543BNN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF878QAY\ type bigBed 5\ useScore 1\ visibility squish\ CaudateNucleusAdultDonor10258_CNhs14232_ctss_fwd CaudateNucleusAdultD10258+ bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward 0 3321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10258_CNhs14232_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_tpm_fwd CaudateNucleusAdultD10258+ bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward 1 3321 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusAdultDonor10258_CNhs14232_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF056WNR ENCSR464TKV Peak bigBed 5 Body of pancreas tissue male adult 54 years DNase peak 4 3321 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/5b4078d7-b283-4b45-b42e-cb09186e8955/ENCFF056WNR.bigBed\ color 6,218,147\ labelFields none\ longLabel Body of pancreas tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR464TKV Peak\ track wgEncodeReg4Epigenetics_ENCFF056WNR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF726ILL ENCSR543BNN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISX ISX ENCSR543BNN signal 2 3321 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5c206da0-82cc-4b53-9ae8-841b1417e07b/ENCFF726ILL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ISX ISX ENCSR543BNN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543BNN Signal\ track wgEncodeReg4TfChip_ENCFF726ILL\ type bigWig\ visibility full\ CaudateNucleusAdultDonor10258_CNhs14232_ctss_rev CaudateNucleusAdultD10258- bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse 0 3322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10258_CNhs14232_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ CaudateNucleusAdultDonor10258_CNhs14232_tpm_rev CaudateNucleusAdultD10258- bigWig caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse 1 3322 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20adult%2c%20donor10258.CNhs14232.10379-105H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, adult, donor10258_CNhs14232_10379-105H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10379-105H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusAdultDonor10258_CNhs14232_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10379-105H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF649PLC ENCSR464TKV Signal bigWig Body of pancreas tissue male adult 54 years DNase signal 2 3322 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/df1bd265-9d68-44f2-8163-b60d9d437285/ENCFF649PLC.bigWig\ color 6,218,147\ longLabel Body of pancreas tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR464TKV Signal\ track wgEncodeReg4Epigenetics_ENCFF649PLC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF107MUW ENCSR543DUC Peak bigBed 5 Lower leg skin tissue female adult (51 years) POLR2A peaks 4 3322 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/e7c544c8-89bd-4dc9-b41d-97fcea89524c/ENCFF107MUW.bigBed\ labelFields none\ longLabel Lower leg skin tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543DUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF107MUW\ type bigBed 5\ useScore 1\ visibility squish\ CaudateNucleusNewbornDonor10223_CNhs14071_ctss_fwd CaudateNucleusNbD10223+ bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward 0 3323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusNewbornDonor10223_CNhs14071_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_tpm_fwd CaudateNucleusNbD10223+ bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward 1 3323 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CaudateNucleusNewbornDonor10223_CNhs14071_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF236NGQ ENCSR464TRM Peak bigBed 5 Tibial nerve tissue male adult 54 years H3K4me3 peak 4 3323 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/160a4d07-cffb-4923-acc9-513043c37363/ENCFF236NGQ.bigBed\ color 255,0,0\ longLabel Tibial nerve tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR464TRM Peak\ track wgEncodeReg4Epigenetics_ENCFF236NGQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF460VEH ENCSR543DUC Signal bigWig Lower leg skin tissue female adult (51 years) POLR2A ENCSR543DUC signal 2 3323 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/248b99a7-c22c-4a62-81d4-ce9282e4126c/ENCFF460VEH.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue female adult (51 years) POLR2A ENCSR543DUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543DUC Signal\ track wgEncodeReg4TfChip_ENCFF460VEH\ type bigWig\ visibility full\ CaudateNucleusNewbornDonor10223_CNhs14071_ctss_rev CaudateNucleusNbD10223- bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse 0 3324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CaudateNucleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusNewbornDonor10223_CNhs14071_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ CaudateNucleusNewbornDonor10223_CNhs14071_tpm_rev CaudateNucleusNbD10223- bigWig caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse 1 3324 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/caudate%20nucleus%2c%20newborn%2c%20donor10223.CNhs14071.10354-105E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel caudate nucleus, newborn, donor10223_CNhs14071_10354-105E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10354-105E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CaudateNucleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CaudateNucleusNewbornDonor10223_CNhs14071_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10354-105E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF779PMH ENCSR464TRM Signal bigWig Tibial nerve tissue male adult 54 years H3K4me3 signal 2 3324 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/927bffe0-5f8b-460f-ac27-983714ca8853/ENCFF779PMH.bigWig\ color 255,0,0\ longLabel Tibial nerve tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR464TRM Signal\ track wgEncodeReg4Epigenetics_ENCFF779PMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF963HPT ENCSR543KOA Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB12 ZBTB12 peaks 4 3324 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/40b25fd5-2ad0-465d-8561-e2976744b453/ENCFF963HPT.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB12 ZBTB12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543KOA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF963HPT\ type bigBed 5\ useScore 1\ visibility squish\ CerebellumAdultDonor10196_CNhs13799_ctss_fwd CerebellumAdultD10196+ bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward 0 3325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10196_CNhs13799_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_tpm_fwd CerebellumAdultD10196+ bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward 1 3325 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10196_CNhs13799_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF587KWH ENCSR465IDZ Peak bigBed 5 K562 treated with 10 nM Vorinostat for 12 hours ATAC peak 4 3325 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/9d2a940d-04b6-4419-bea7-813b6a49d24f/ENCFF587KWH.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Vorinostat for 12 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR465IDZ Peak\ track wgEncodeReg4Epigenetics_ENCFF587KWH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF383WFG ENCSR543KOA Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB12 ZBTB12 ENCSR543KOA signal 2 3325 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/bb74520b-f828-496b-9da9-cd6c88a41399/ENCFF383WFG.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB12 ZBTB12 ENCSR543KOA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543KOA Signal\ track wgEncodeReg4TfChip_ENCFF383WFG\ type bigWig\ visibility full\ CerebellumAdultDonor10196_CNhs13799_ctss_rev CerebellumAdultD10196- bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse 0 3326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10196_CNhs13799_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10196_CNhs13799_tpm_rev CerebellumAdultD10196- bigWig cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse 1 3326 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%20-%20adult%2c%20donor10196.CNhs13799.10173-103C2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum - adult, donor10196_CNhs13799_10173-103C2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10173-103C2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10196_CNhs13799_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10173-103C2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF859SSI ENCSR465IDZ Signal bigWig K562 treated with 10 nM Vorinostat for 12 hours ATAC signal 2 3326 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/5627567b-e239-4bc3-b106-702afca1fd1c/ENCFF859SSI.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Vorinostat for 12 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR465IDZ Signal\ track wgEncodeReg4Epigenetics_ENCFF859SSI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF220RKA ENCSR543SBE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1 NFE2L1 peaks 4 3326 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/c70af27e-6c31-4b82-af3d-709eb8d1fa07/ENCFF220RKA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1 NFE2L1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543SBE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF220RKA\ type bigBed 5\ useScore 1\ visibility squish\ CerebellumAdultDonor10252_CNhs12323_ctss_fwd CerebellumAdultD10252+ bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward 0 3327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10252_CNhs12323_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_tpm_fwd CerebellumAdultD10252+ bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward 1 3327 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultDonor10252_CNhs12323_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF725UNB ENCSR466DZW Peak bigBed 5 Lung tissue female adult 30 years H3K4me3 peak 4 3327 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/d4ca3085-e715-4510-ba97-649dde007b24/ENCFF725UNB.bigBed\ color 255,0,0\ longLabel Lung tissue female adult 30 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR466DZW Peak\ track wgEncodeReg4Epigenetics_ENCFF725UNB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF187DNY ENCSR543SBE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1 NFE2L1 ENCSR543SBE signal 2 3327 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/eb1e82ca-e8ad-4f7d-aedb-19d21ddbe042/ENCFF187DNY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2L1 NFE2L1 ENCSR543SBE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR543SBE Signal\ track wgEncodeReg4TfChip_ENCFF187DNY\ type bigWig\ visibility full\ CerebellumAdultDonor10252_CNhs12323_ctss_rev CerebellumAdultD10252- bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse 0 3328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10252_CNhs12323_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ CerebellumAdultDonor10252_CNhs12323_tpm_rev CerebellumAdultD10252- bigWig cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse 1 3328 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20donor10252.CNhs12323.10166-103B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, donor10252_CNhs12323_10166-103B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10166-103B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultDonor10252_CNhs12323_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10166-103B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF050YYY ENCSR466DZW Signal bigWig Lung tissue female adult 30 years H3K4me3 signal 2 3328 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/943b8a0b-e818-4ff7-b3e5-f279da20a868/ENCFF050YYY.bigWig\ color 255,0,0\ longLabel Lung tissue female adult 30 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR466DZW Signal\ track wgEncodeReg4Epigenetics_ENCFF050YYY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF185CKY ENCSR544APK Peak bigBed 5 Heart left ventricle tissue female adult (53 years) CTCF peaks 4 3328 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/515aa866-acc6-4e78-840f-80359972dbd7/ENCFF185CKY.bigBed\ labelFields none\ longLabel Heart left ventricle tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR544APK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF185CKY\ type bigBed 5\ useScore 1\ visibility squish\ CerebellumAdultPool1_CNhs11795_ctss_fwd CerebellumAdultPl1+ bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_forward 0 3329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultPool1_CNhs11795_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_tpm_fwd CerebellumAdultPl1+ bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_forward 1 3329 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumAdultPool1_CNhs11795_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF543WPX ENCSR466SUZ Peak bigBed 5 Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak 4 3329 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/09e39ed7-e84a-4b00-9c06-bb6e8d619877/ENCFF543WPX.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR466SUZ Peak\ track wgEncodeReg4Epigenetics_ENCFF543WPX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF440RUS ENCSR544APK Signal bigWig Heart left ventricle tissue female adult (53 years) CTCF ENCSR544APK signal 2 3329 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4c3380cf-1cb3-4379-b586-d61ed50841e2/ENCFF440RUS.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (53 years) CTCF ENCSR544APK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR544APK Signal\ track wgEncodeReg4TfChip_ENCFF440RUS\ type bigWig\ visibility full\ CerebellumAdultPool1_CNhs11795_ctss_rev CerebellumAdultPl1- bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse 0 3330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultPool1_CNhs11795_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ CerebellumAdultPool1_CNhs11795_tpm_rev CerebellumAdultPl1- bigWig cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse 1 3330 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20adult%2c%20pool1.CNhs11795.10083-102B2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, adult, pool1_CNhs11795_10083-102B2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10083-102B2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumAdultPool1_CNhs11795_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10083-102B2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF913TXQ ENCSR466SUZ Signal bigWig Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal 2 3330 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/3467db29-c274-4629-beb4-a5b6ceabae23/ENCFF913TXQ.bigWig\ color 6,218,147\ longLabel Activated T-cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR466SUZ Signal\ track wgEncodeReg4Epigenetics_ENCFF913TXQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF214WKT ENCSR544GUO Peak bigBed 5 A549 BCL3 peaks 4 3330 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/5f77bc71-8130-40a7-8f5b-79aa524b3304/ENCFF214WKT.bigBed\ labelFields none\ longLabel A549 BCL3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR544GUO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF214WKT\ type bigBed 5\ useScore 1\ visibility squish\ CerebellumNewbornDonor10223_CNhs14075_ctss_fwd CerebellumNbD10223+ bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward 0 3331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumNewbornDonor10223_CNhs14075_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_tpm_fwd CerebellumNbD10223+ bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward 1 3331 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebellumNewbornDonor10223_CNhs14075_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF139JDN ENCSR466TNQ Peak bigBed 5 Spleen tissue female adult 61 years CTCF peak 4 3331 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ce9e2c06-0c45-44b7-a564-9a3211ee54e4/ENCFF139JDN.bigBed\ color 0,176,240\ labelFields none\ longLabel Spleen tissue female adult 61 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR466TNQ Peak\ track wgEncodeReg4Epigenetics_ENCFF139JDN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF252HVZ ENCSR544GUO Signal bigWig A549 BCL3 ENCSR544GUO signal 2 3331 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/136ec936-6675-4863-a4b3-124464103e1e/ENCFF252HVZ.bigWig\ color 130,163,45\ longLabel A549 BCL3 ENCSR544GUO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR544GUO Signal\ track wgEncodeReg4TfChip_ENCFF252HVZ\ type bigWig\ visibility full\ CerebellumNewbornDonor10223_CNhs14075_ctss_rev CerebellumNbD10223- bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse 0 3332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebellumNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumNewbornDonor10223_CNhs14075_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ CerebellumNewbornDonor10223_CNhs14075_tpm_rev CerebellumNbD10223- bigWig cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse 1 3332 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebellum%2c%20newborn%2c%20donor10223.CNhs14075.10357-105E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebellum, newborn, donor10223_CNhs14075_10357-105E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10357-105E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebellumNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebellumNewbornDonor10223_CNhs14075_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10357-105E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF806GMH ENCSR466TNQ Signal bigWig Spleen tissue female adult 61 years CTCF signal 2 3332 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/4e685eef-bd63-4263-a7c2-5e1ecafb6ee1/ENCFF806GMH.bigWig\ color 0,176,240\ longLabel Spleen tissue female adult 61 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR466TNQ Signal\ track wgEncodeReg4Epigenetics_ENCFF806GMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF926AYJ ENCSR544MTJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP8 THAP8 peaks 4 3332 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/126b377f-b4a8-4b0b-b7dc-603b2948301b/ENCFF926AYJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP8 THAP8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR544MTJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF926AYJ\ type bigBed 5\ useScore 1\ visibility squish\ CerebralMeningesAdult_CNhs12840_ctss_fwd CerebralMeningesAdult+ bigWig cerebral meninges, adult_CNhs12840_10188-103D8_forward 0 3333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebralMeningesAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebralMeningesAdult_CNhs12840_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_tpm_fwd CerebralMeningesAdult+ bigWig cerebral meninges, adult_CNhs12840_10188-103D8_forward 1 3333 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebralMeningesAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebralMeningesAdult_CNhs12840_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF067KUH ENCSR467EQP Peak bigBed 5 Brain organoid female embryo 5 days, 90 days post differentiation CTCF peak 4 3333 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/356f46cf-d89b-4d90-91ae-4f6efd66c52f/ENCFF067KUH.bigBed\ color 0,176,240\ labelFields none\ longLabel Brain organoid female embryo 5 days, 90 days post differentiation CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467EQP Peak\ track wgEncodeReg4Epigenetics_ENCFF067KUH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF728CFQ ENCSR544MTJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP8 THAP8 ENCSR544MTJ signal 2 3333 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/191faa7e-4a68-48ed-9b74-c92de608ef4e/ENCFF728CFQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP8 THAP8 ENCSR544MTJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR544MTJ Signal\ track wgEncodeReg4TfChip_ENCFF728CFQ\ type bigWig\ visibility full\ CerebralMeningesAdult_CNhs12840_ctss_rev CerebralMeningesAdult- bigWig cerebral meninges, adult_CNhs12840_10188-103D8_reverse 0 3334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebralMeningesAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebralMeningesAdult_CNhs12840_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ CerebralMeningesAdult_CNhs12840_tpm_rev CerebralMeningesAdult- bigWig cerebral meninges, adult_CNhs12840_10188-103D8_reverse 1 3334 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebral%20meninges%2c%20adult.CNhs12840.10188-103D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebral meninges, adult_CNhs12840_10188-103D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10188-103D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebralMeningesAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebralMeningesAdult_CNhs12840_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10188-103D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF485XTX ENCSR467EQP Signal bigWig Brain organoid female embryo 5 days, 90 days post differentiation CTCF signal 2 3334 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/19a794d8-50b1-486b-92d7-763db2b448ee/ENCFF485XTX.bigWig\ color 0,176,240\ longLabel Brain organoid female embryo 5 days, 90 days post differentiation CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467EQP Signal\ track wgEncodeReg4Epigenetics_ENCFF485XTX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF499IIA ENCSR545ACM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF549 ZNF549 peaks 4 3334 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/308ae6d5-1501-4a89-8c34-6d0096a83968/ENCFF499IIA.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF549 ZNF549 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR545ACM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF499IIA\ type bigBed 5\ useScore 1\ visibility squish\ CerebrospinalFluidDonor2_CNhs13437_ctss_fwd CerebrospinalFluidD2+ bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward 0 3335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebrospinalFluidD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebrospinalFluidDonor2_CNhs13437_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_tpm_fwd CerebrospinalFluidD2+ bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward 1 3335 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebrospinalFluidD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CerebrospinalFluidDonor2_CNhs13437_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF483RLW ENCSR467LJT Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase peak 4 3335 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/a74597fe-f3ed-4ac1-8e0d-bf52b60e7ba0/ENCFF483RLW.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467LJT Peak\ track wgEncodeReg4Epigenetics_ENCFF483RLW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF809XDM ENCSR545ACM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF549 ZNF549 ENCSR545ACM signal 2 3335 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/275568c1-f57f-4bac-8a88-61d64e4baf89/ENCFF809XDM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF549 ZNF549 ENCSR545ACM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR545ACM Signal\ track wgEncodeReg4TfChip_ENCFF809XDM\ type bigWig\ visibility full\ CerebrospinalFluidDonor2_CNhs13437_ctss_rev CerebrospinalFluidD2- bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse 0 3336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CerebrospinalFluidD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebrospinalFluidDonor2_CNhs13437_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ CerebrospinalFluidDonor2_CNhs13437_tpm_rev CerebrospinalFluidD2- bigWig cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse 1 3336 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cerebrospinal%20fluid%2c%20donor2.CNhs13437.10294-104G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cerebrospinal fluid, donor2_CNhs13437_10294-104G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10294-104G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CerebrospinalFluidD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CerebrospinalFluidDonor2_CNhs13437_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10294-104G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF883CMH ENCSR467LJT Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase signal 2 3336 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/7bb6d13c-c63e-4275-a1c2-33aaa6fcf721/ENCFF883CMH.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL TNF-alpha for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467LJT Signal\ track wgEncodeReg4Epigenetics_ENCFF883CMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF470FKK ENCSR545FXC Peak bigBed 5 HepG2 ATF7 peaks 4 3336 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8e18d63a-146f-430f-ab8e-af3b8575cbd0/ENCFF470FKK.bigBed\ labelFields none\ longLabel HepG2 ATF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR545FXC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF470FKK\ type bigBed 5\ useScore 1\ visibility squish\ CervixAdultPool1_CNhs10618_ctss_fwd CervixAdultPl1+ bigWig cervix, adult, pool1_CNhs10618_10013-101C4_forward 0 3337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CervixAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CervixAdultPool1_CNhs10618_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_tpm_fwd CervixAdultPl1+ bigWig cervix, adult, pool1_CNhs10618_10013-101C4_forward 1 3337 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CervixAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CervixAdultPool1_CNhs10618_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF708QGT ENCSR467MSP Peak bigBed 5 T-cell female adult 23 years DNase peak 4 3337 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/8d6a46db-5e98-492a-949b-ab806cdc6166/ENCFF708QGT.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 23 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467MSP Peak\ track wgEncodeReg4Epigenetics_ENCFF708QGT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF530QXA ENCSR545FXC Signal bigWig HepG2 ATF7 ENCSR545FXC signal 2 3337 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5bd065bc-e4a8-4528-9e6c-10ee858382b6/ENCFF530QXA.bigWig\ color 137,152,82\ longLabel HepG2 ATF7 ENCSR545FXC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR545FXC Signal\ track wgEncodeReg4TfChip_ENCFF530QXA\ type bigWig\ visibility full\ CervixAdultPool1_CNhs10618_ctss_rev CervixAdultPl1- bigWig cervix, adult, pool1_CNhs10618_10013-101C4_reverse 0 3338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CervixAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CervixAdultPool1_CNhs10618_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ CervixAdultPool1_CNhs10618_tpm_rev CervixAdultPl1- bigWig cervix, adult, pool1_CNhs10618_10013-101C4_reverse 1 3338 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cervix%2c%20adult%2c%20pool1.CNhs10618.10013-101C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cervix, adult, pool1_CNhs10618_10013-101C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10013-101C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CervixAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CervixAdultPool1_CNhs10618_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10013-101C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF731MVA ENCSR467MSP Signal bigWig T-cell female adult 23 years DNase signal 2 3338 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/fbc61a69-8f60-4419-8a5b-e5b7209b2d7b/ENCFF731MVA.bigWig\ color 6,218,147\ longLabel T-cell female adult 23 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467MSP Signal\ track wgEncodeReg4Epigenetics_ENCFF731MVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF579ZRD ENCSR546IHU Peak bigBed 5 K562 ZNF184 peaks 4 3338 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/cc749861-67ca-41c7-b6e5-40a89483e2e4/ENCFF579ZRD.bigBed\ labelFields none\ longLabel K562 ZNF184 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR546IHU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF579ZRD\ type bigBed 5\ useScore 1\ visibility squish\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_fwd ClontechUniversalReferencePl1+ bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward 0 3339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ClontechUniversalReferencePl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_fwd ClontechUniversalReferencePl1+ bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward 1 3339 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ClontechUniversalReferencePl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF172ZJN ENCSR467UCT Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 3339 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/12fa465c-6fbb-45ff-883f-9b7c21b3fc2f/ENCFF172ZJN.bigBed\ color 255,0,0\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467UCT Peak\ track wgEncodeReg4Epigenetics_ENCFF172ZJN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF770COF ENCSR546IHU Signal bigWig K562 ZNF184 ENCSR546IHU signal 2 3339 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/73179951-751c-4804-90e0-fbc5e4a8f44e/ENCFF770COF.bigWig\ color 254,75,173\ longLabel K562 ZNF184 ENCSR546IHU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR546IHU Signal\ track wgEncodeReg4TfChip_ENCFF770COF\ type bigWig\ visibility full\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_rev ClontechUniversalReferencePl1- bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse 0 3340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ClontechUniversalReferencePl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_rev ClontechUniversalReferencePl1- bigWig Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse 1 3340 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Clontech%20Human%20Universal%20Reference%20Total%20RNA%2c%20pool1.CNhs10608.10000-101A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Clontech Human Universal Reference Total RNA, pool1_CNhs10608_10000-101A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10000-101A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ClontechUniversalReferencePl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ClontechHumanUniversalReferenceTotalRNAPool1_CNhs10608_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10000-101A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF128WCS ENCSR467UCT Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 3340 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/d3c02fd9-dd32-4fbe-864e-6045fe66841b/ENCFF128WCS.bigWig\ color 255,0,0\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 20 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR467UCT Signal\ track wgEncodeReg4Epigenetics_ENCFF128WCS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF188KBZ ENCSR546KCN Peak bigBed 5 MCF-7 stably expressing FOSL2 FOSL2 peaks 4 3340 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/843c8641-8801-442e-923c-61367ebf6b4d/ENCFF188KBZ.bigBed\ labelFields none\ longLabel MCF-7 stably expressing FOSL2 FOSL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR546KCN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF188KBZ\ type bigBed 5\ useScore 1\ visibility squish\ ColonAdultDonor1_CNhs11794_ctss_fwd ColonAdultD1+ bigWig colon, adult, donor1_CNhs11794_10082-102B1_forward 0 3341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultDonor1_CNhs11794_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_tpm_fwd ColonAdultD1+ bigWig colon, adult, donor1_CNhs11794_10082-102B1_forward 1 3341 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultDonor1_CNhs11794_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF701NYI ENCSR468AKF Peak bigBed 5 B cell male adult 22 years DNase peak 4 3341 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/e3581a1c-d7f9-49a7-a0fd-cd125e93c8ed/ENCFF701NYI.bigBed\ color 6,218,147\ labelFields none\ longLabel B cell male adult 22 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR468AKF Peak\ track wgEncodeReg4Epigenetics_ENCFF701NYI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF867OEG ENCSR546KCN Signal bigWig MCF-7 stably expressing FOSL2 FOSL2 ENCSR546KCN signal 2 3341 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/9e63fc1e-d3ec-44e3-a4c1-7647fbee9dc5/ENCFF867OEG.bigWig\ color 65,171,173\ longLabel MCF-7 stably expressing FOSL2 FOSL2 ENCSR546KCN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR546KCN Signal\ track wgEncodeReg4TfChip_ENCFF867OEG\ type bigWig\ visibility full\ ColonAdultDonor1_CNhs11794_ctss_rev ColonAdultD1- bigWig colon, adult, donor1_CNhs11794_10082-102B1_reverse 0 3342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultDonor1_CNhs11794_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ ColonAdultDonor1_CNhs11794_tpm_rev ColonAdultD1- bigWig colon, adult, donor1_CNhs11794_10082-102B1_reverse 1 3342 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20donor1.CNhs11794.10082-102B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon, adult, donor1_CNhs11794_10082-102B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10082-102B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultDonor1_CNhs11794_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10082-102B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF429CVH ENCSR468AKF Signal bigWig B cell male adult 22 years DNase signal 2 3342 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/327322da-4253-4a28-b6c9-dfe946796bab/ENCFF429CVH.bigWig\ color 6,218,147\ longLabel B cell male adult 22 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR468AKF Signal\ track wgEncodeReg4Epigenetics_ENCFF429CVH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF696VMK ENCSR547LKC Peak bigBed 5 K562 GATAD2B peaks 4 3342 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/16264f29-9cc6-4945-bb9e-064e33d5355e/ENCFF696VMK.bigBed\ labelFields none\ longLabel K562 GATAD2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR547LKC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF696VMK\ type bigBed 5\ useScore 1\ visibility squish\ ColonAdultPool1_CNhs10619_ctss_fwd ColonAdultPl1+ bigWig colon, adult, pool1_CNhs10619_10014-101C5_forward 0 3343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultPool1_CNhs10619_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_tpm_fwd ColonAdultPl1+ bigWig colon, adult, pool1_CNhs10619_10014-101C5_forward 1 3343 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonAdultPool1_CNhs10619_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF290DSW ENCSR468OVW Peak bigBed 5 Left lung tissue female embryo 105 days DNase peak 4 3343 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/67367a35-c666-4c70-82b4-cf0ba17669c3/ENCFF290DSW.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR468OVW Peak\ track wgEncodeReg4Epigenetics_ENCFF290DSW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF943WWP ENCSR547LKC Signal bigWig K562 GATAD2B ENCSR547LKC signal 2 3343 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3dec7777-c7c9-4046-b0a7-1f330260bb90/ENCFF943WWP.bigWig\ color 254,75,173\ longLabel K562 GATAD2B ENCSR547LKC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR547LKC Signal\ track wgEncodeReg4TfChip_ENCFF943WWP\ type bigWig\ visibility full\ ColonAdultPool1_CNhs10619_ctss_rev ColonAdultPl1- bigWig colon, adult, pool1_CNhs10619_10014-101C5_reverse 0 3344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultPool1_CNhs10619_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ ColonAdultPool1_CNhs10619_tpm_rev ColonAdultPl1- bigWig colon, adult, pool1_CNhs10619_10014-101C5_reverse 1 3344 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20adult%2c%20pool1.CNhs10619.10014-101C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon, adult, pool1_CNhs10619_10014-101C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10014-101C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonAdultPool1_CNhs10619_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10014-101C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF347LRJ ENCSR468OVW Signal bigWig Left lung tissue female embryo 105 days DNase signal 2 3344 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/6740a672-9fd7-4778-8841-f80fb1cf24a6/ENCFF347LRJ.bigWig\ color 6,218,147\ longLabel Left lung tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR468OVW Signal\ track wgEncodeReg4Epigenetics_ENCFF347LRJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF845YUT ENCSR548DDS Peak bigBed 5 Ovary tissue female adult (51 years) CTCF peaks 4 3344 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d15b7d22-d42b-41b8-8e00-be1c7dc8f486/ENCFF845YUT.bigBed\ labelFields none\ longLabel Ovary tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR548DDS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF845YUT\ type bigBed 5\ useScore 1\ visibility squish\ ColonFetalDonor1_CNhs11780_ctss_fwd ColonFetalD1+ bigWig colon, fetal, donor1_CNhs11780_10070-101I7_forward 0 3345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonFetalDonor1_CNhs11780_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_tpm_fwd ColonFetalD1+ bigWig colon, fetal, donor1_CNhs11780_10070-101I7_forward 1 3345 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ColonFetalDonor1_CNhs11780_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF524DDE ENCSR468ZXN Peak bigBed 5 Common myeloid progenitor, CD34-positive female adult 33 years DNase peak 4 3345 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/db20bf08-dc19-457c-ba33-a7ed4d81a337/ENCFF524DDE.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive female adult 33 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR468ZXN Peak\ track wgEncodeReg4Epigenetics_ENCFF524DDE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF666MLU ENCSR548DDS Signal bigWig Ovary tissue female adult (51 years) CTCF ENCSR548DDS signal 2 3345 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/6ab8f72a-252a-4fe4-b75f-61414eac5456/ENCFF666MLU.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (51 years) CTCF ENCSR548DDS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR548DDS Signal\ track wgEncodeReg4TfChip_ENCFF666MLU\ type bigWig\ visibility full\ ColonFetalDonor1_CNhs11780_ctss_rev ColonFetalD1- bigWig colon, fetal, donor1_CNhs11780_10070-101I7_reverse 0 3346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ColonFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonFetalDonor1_CNhs11780_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ ColonFetalDonor1_CNhs11780_tpm_rev ColonFetalD1- bigWig colon, fetal, donor1_CNhs11780_10070-101I7_reverse 1 3346 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/colon%2c%20fetal%2c%20donor1.CNhs11780.10070-101I7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel colon, fetal, donor1_CNhs11780_10070-101I7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10070-101I7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ColonFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ColonFetalDonor1_CNhs11780_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10070-101I7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF850RIV ENCSR468ZXN Signal bigWig Common myeloid progenitor, CD34-positive female adult 33 years DNase signal 2 3346 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/ad82607b-102f-493d-8b85-c71d63172594/ENCFF850RIV.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive female adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR468ZXN Signal\ track wgEncodeReg4Epigenetics_ENCFF850RIV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF276JLT ENCSR549PAU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21 ZBTB21 peaks 4 3346 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/542ea707-e7a5-414a-8733-3808a55b9667/ENCFF276JLT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21 ZBTB21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR549PAU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF276JLT\ type bigBed 5\ useScore 1\ visibility squish\ CorpusCallosumAdultPool1_CNhs10649_ctss_fwd CorpusCallosumAdultPl1+ bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward 0 3347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CorpusCallosumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CorpusCallosumAdultPool1_CNhs10649_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_tpm_fwd CorpusCallosumAdultPl1+ bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward 1 3347 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CorpusCallosumAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CorpusCallosumAdultPool1_CNhs10649_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF446LNW ENCSR469CFL Peak bigBed 5 Multiple sclerosis immature natural killer cell H3K27ac peak 4 3347 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/046d0bde-b2f9-43e4-9cde-47c9b838d2d7/ENCFF446LNW.bigBed\ color 181,145,0\ longLabel Multiple sclerosis immature natural killer cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR469CFL Peak\ track wgEncodeReg4Epigenetics_ENCFF446LNW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF907WHP ENCSR549PAU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21 ZBTB21 ENCSR549PAU signal 2 3347 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/913cbdc8-e713-4b49-8699-503b8f303a6f/ENCFF907WHP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB21 ZBTB21 ENCSR549PAU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR549PAU Signal\ track wgEncodeReg4TfChip_ENCFF907WHP\ type bigWig\ visibility full\ CorpusCallosumAdultPool1_CNhs10649_ctss_rev CorpusCallosumAdultPl1- bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse 0 3348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CorpusCallosumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CorpusCallosumAdultPool1_CNhs10649_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ CorpusCallosumAdultPool1_CNhs10649_tpm_rev CorpusCallosumAdultPl1- bigWig corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse 1 3348 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/corpus%20callosum%2c%20adult%2c%20pool1.CNhs10649.10042-101F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel corpus callosum, adult, pool1_CNhs10649_10042-101F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10042-101F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CorpusCallosumAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CorpusCallosumAdultPool1_CNhs10649_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10042-101F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF185BYZ ENCSR469CFL Signal bigWig Multiple sclerosis immature natural killer cell H3K27ac signal 2 3348 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/102defe4-9683-4fef-b895-2d1acb035dc5/ENCFF185BYZ.bigWig\ color 181,145,0\ longLabel Multiple sclerosis immature natural killer cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR469CFL Signal\ track wgEncodeReg4Epigenetics_ENCFF185BYZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF692DLQ ENCSR549TXG Peak bigBed 5 Thoracic aorta tissue male adult (37 years) CTCF peaks 4 3348 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/09/07/c35b0b02-c9b7-44ca-a7c2-5ab3805cad9b/ENCFF692DLQ.bigBed\ labelFields none\ longLabel Thoracic aorta tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR549TXG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF692DLQ\ type bigBed 5\ useScore 1\ visibility squish\ CruciateLigamentDonor2_CNhs13439_ctss_fwd CruciateLigamentD2+ bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_forward 0 3349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CruciateLigamentD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CruciateLigamentDonor2_CNhs13439_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_tpm_fwd CruciateLigamentD2+ bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_forward 1 3349 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CruciateLigamentD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track CruciateLigamentDonor2_CNhs13439_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF558YZG ENCSR470ZNM Peak bigBed 5 HG03060 ATAC peak 4 3349 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/31d53078-8b1e-43e3-9ed9-9951486f6089/ENCFF558YZG.bigBed\ color 2,199,185\ longLabel HG03060 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR470ZNM Peak\ track wgEncodeReg4Epigenetics_ENCFF558YZG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF429ZQN ENCSR549TXG Signal bigWig Thoracic aorta tissue male adult (37 years) CTCF ENCSR549TXG signal 2 3349 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/83643ed7-e475-466b-8cf8-b92ac2fb7419/ENCFF429ZQN.bigWig\ color 255,37,41\ longLabel Thoracic aorta tissue male adult (37 years) CTCF ENCSR549TXG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR549TXG Signal\ track wgEncodeReg4TfChip_ENCFF429ZQN\ type bigWig\ visibility full\ CruciateLigamentDonor2_CNhs13439_ctss_rev CruciateLigamentD2- bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_reverse 0 3350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel CruciateLigamentD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CruciateLigamentDonor2_CNhs13439_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ CruciateLigamentDonor2_CNhs13439_tpm_rev CruciateLigamentD2- bigWig cruciate ligament, donor2_CNhs13439_10295-104G7_reverse 1 3350 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/cruciate%20ligament%2c%20donor2.CNhs13439.10295-104G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel cruciate ligament, donor2_CNhs13439_10295-104G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10295-104G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel CruciateLigamentD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track CruciateLigamentDonor2_CNhs13439_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10295-104G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF337DQV ENCSR470ZNM Signal bigWig HG03060 ATAC signal 2 3350 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/a323152b-1bc3-4a8b-bbc8-5cc75f913b6f/ENCFF337DQV.bigWig\ color 2,199,185\ longLabel HG03060 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR470ZNM Signal\ track wgEncodeReg4Epigenetics_ENCFF337DQV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF593FMT ENCSR549WAU Peak bigBed 5 Stomach tissue male adult (54 years) CTCF peaks 4 3350 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b8768bee-8877-4a71-b71c-7e5486f4ca86/ENCFF593FMT.bigBed\ labelFields none\ longLabel Stomach tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR549WAU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF593FMT\ type bigBed 5\ useScore 1\ visibility squish\ DiaphragmFetalDonor1_CNhs11779_ctss_fwd DiaphragmFetalD1+ bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward 0 3351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiaphragmFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiaphragmFetalDonor1_CNhs11779_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_tpm_fwd DiaphragmFetalD1+ bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward 1 3351 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiaphragmFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiaphragmFetalDonor1_CNhs11779_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF879RZE ENCSR471RHG Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak 4 3351 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/36443041-a1d7-42d0-8b32-713ce19492c2/ENCFF879RZE.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR471RHG Peak\ track wgEncodeReg4Epigenetics_ENCFF879RZE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF166JQQ ENCSR549WAU Signal bigWig Stomach tissue male adult (54 years) CTCF ENCSR549WAU signal 2 3351 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/6b1f5e10-eb60-436d-b1fa-c5eb49709b01/ENCFF166JQQ.bigWig\ color 145,144,99\ longLabel Stomach tissue male adult (54 years) CTCF ENCSR549WAU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR549WAU Signal\ track wgEncodeReg4TfChip_ENCFF166JQQ\ type bigWig\ visibility full\ DiaphragmFetalDonor1_CNhs11779_ctss_rev DiaphragmFetalD1- bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse 0 3352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiaphragmFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiaphragmFetalDonor1_CNhs11779_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ DiaphragmFetalDonor1_CNhs11779_tpm_rev DiaphragmFetalD1- bigWig diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse 1 3352 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diaphragm%2c%20fetal%2c%20donor1.CNhs11779.10069-101I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel diaphragm, fetal, donor1_CNhs11779_10069-101I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10069-101I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiaphragmFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiaphragmFetalDonor1_CNhs11779_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10069-101I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF704KAB ENCSR471RHG Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal 2 3352 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/64116e02-71ff-4795-8a78-38730f28796e/ENCFF704KAB.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR471RHG Signal\ track wgEncodeReg4Epigenetics_ENCFF704KAB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF078GIY ENCSR550HCT Peak bigBed 5 K562 stably expressing KLF1 KLF1 peaks 4 3352 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/b639fab1-d365-43ef-9497-9b940df99d18/ENCFF078GIY.bigBed\ labelFields none\ longLabel K562 stably expressing KLF1 KLF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR550HCT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF078GIY\ type bigBed 5\ useScore 1\ visibility squish\ DiencephalonAdult_CNhs12610_ctss_fwd DiencephalonAdult+ bigWig diencephalon, adult_CNhs12610_10193-103E4_forward 0 3353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel diencephalon, adult_CNhs12610_10193-103E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiencephalonAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiencephalonAdult_CNhs12610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_tpm_fwd DiencephalonAdult+ bigWig diencephalon, adult_CNhs12610_10193-103E4_forward 1 3353 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel diencephalon, adult_CNhs12610_10193-103E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiencephalonAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DiencephalonAdult_CNhs12610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF975JNG ENCSR472BJI Peak bigBed 5 Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K27ac peak 4 3353 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/73ceb0b6-1749-43ef-8f94-866d9c7add73/ENCFF975JNG.bigBed\ color 181,145,0\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR472BJI Peak\ track wgEncodeReg4Epigenetics_ENCFF975JNG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF739JWP ENCSR550HCT Signal bigWig K562 stably expressing KLF1 KLF1 ENCSR550HCT signal 2 3353 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ec2d7d9e-2dac-4b84-b4bf-00fa070093fb/ENCFF739JWP.bigWig\ color 254,75,173\ longLabel K562 stably expressing KLF1 KLF1 ENCSR550HCT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR550HCT Signal\ track wgEncodeReg4TfChip_ENCFF739JWP\ type bigWig\ visibility full\ DiencephalonAdult_CNhs12610_ctss_rev DiencephalonAdult- bigWig diencephalon, adult_CNhs12610_10193-103E4_reverse 0 3354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel diencephalon, adult_CNhs12610_10193-103E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DiencephalonAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiencephalonAdult_CNhs12610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ DiencephalonAdult_CNhs12610_tpm_rev DiencephalonAdult- bigWig diencephalon, adult_CNhs12610_10193-103E4_reverse 1 3354 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/diencephalon%2c%20adult.CNhs12610.10193-103E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel diencephalon, adult_CNhs12610_10193-103E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10193-103E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DiencephalonAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DiencephalonAdult_CNhs12610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10193-103E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF888NJV ENCSR472BJI Signal bigWig Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K27ac signal 2 3354 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/a7dc6e2a-2eb4-48c0-9039-92440b5a5e3a/ENCFF888NJV.bigWig\ color 181,145,0\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 42 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR472BJI Signal\ track wgEncodeReg4Epigenetics_ENCFF888NJV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF005TEA ENCSR550SCU Peak bigBed 5 A549 CHD4 peaks 4 3354 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/c8b4ab8d-f7ad-418c-975a-c3f194ee66be/ENCFF005TEA.bigBed\ labelFields none\ longLabel A549 CHD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR550SCU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF005TEA\ type bigBed 5\ useScore 1\ visibility squish\ DuctusDeferensAdult_CNhs12846_ctss_fwd DuctusDeferensAdult+ bigWig ductus deferens, adult_CNhs12846_10196-103E7_forward 0 3355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuctusDeferensAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuctusDeferensAdult_CNhs12846_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_tpm_fwd DuctusDeferensAdult+ bigWig ductus deferens, adult_CNhs12846_10196-103E7_forward 1 3355 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuctusDeferensAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuctusDeferensAdult_CNhs12846_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF397BGC ENCSR472ZFJ Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 3355 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/79d1bdeb-ed1a-43b0-944e-6c95df55e5fe/ENCFF397BGC.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR472ZFJ Peak\ track wgEncodeReg4Epigenetics_ENCFF397BGC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF503BJZ ENCSR550SCU Signal bigWig A549 CHD4 ENCSR550SCU signal 2 3355 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4623ab84-e9ea-4e18-86cf-3daf0589503d/ENCFF503BJZ.bigWig\ color 130,163,45\ longLabel A549 CHD4 ENCSR550SCU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR550SCU Signal\ track wgEncodeReg4TfChip_ENCFF503BJZ\ type bigWig\ visibility full\ DuctusDeferensAdult_CNhs12846_ctss_rev DuctusDeferensAdult- bigWig ductus deferens, adult_CNhs12846_10196-103E7_reverse 0 3356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuctusDeferensAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuctusDeferensAdult_CNhs12846_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ DuctusDeferensAdult_CNhs12846_tpm_rev DuctusDeferensAdult- bigWig ductus deferens, adult_CNhs12846_10196-103E7_reverse 1 3356 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ductus%20deferens%2c%20adult.CNhs12846.10196-103E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ductus deferens, adult_CNhs12846_10196-103E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10196-103E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuctusDeferensAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuctusDeferensAdult_CNhs12846_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10196-103E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF095LZE ENCSR472ZFJ Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 3356 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c453c6ef-86ed-456b-9c7e-e6e5867d9e23/ENCFF095LZE.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR472ZFJ Signal\ track wgEncodeReg4Epigenetics_ENCFF095LZE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF211FPL ENCSR551MLB Peak bigBed 5 Gastroesophageal sphincter tissue male adult (37 years) EP300 peaks 4 3356 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ae3921a2-bd08-4bde-a9ba-5861458d0cf6/ENCFF211FPL.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult (37 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR551MLB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF211FPL\ type bigBed 5\ useScore 1\ visibility squish\ DuodenumFetalDonor1TechRep1_CNhs11781_ctss_fwd DuodenumFetalD1Tr1+ bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward 0 3357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep1_CNhs11781_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_tpm_fwd DuodenumFetalD1Tr1+ bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward 1 3357 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep1_CNhs11781_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF163IJK ENCSR473DVS Peak bigBed 5 Heart right ventricle tissue male adult 40 years CTCF peak 4 3357 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/9d189f9a-32de-424e-b9ba-b4b0fe051102/ENCFF163IJK.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart right ventricle tissue male adult 40 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473DVS Peak\ track wgEncodeReg4Epigenetics_ENCFF163IJK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF458BXU ENCSR551MLB Signal bigWig Gastroesophageal sphincter tissue male adult (37 years) EP300 ENCSR551MLB signal 2 3357 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1146f63a-1316-4270-a7ee-b4571ff5a462/ENCFF458BXU.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (37 years) EP300 ENCSR551MLB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR551MLB Signal\ track wgEncodeReg4TfChip_ENCFF458BXU\ type bigWig\ visibility full\ DuodenumFetalDonor1TechRep1_CNhs11781_ctss_rev DuodenumFetalD1Tr1- bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse 0 3358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep1_CNhs11781_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep1_CNhs11781_tpm_rev DuodenumFetalD1Tr1- bigWig duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse 1 3358 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11781.10071-101I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep1_CNhs11781_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep1_CNhs11781_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF170TDI ENCSR473DVS Signal bigWig Heart right ventricle tissue male adult 40 years CTCF signal 2 3358 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4db82e7d-ccd9-4f07-99f5-059323ea3ab8/ENCFF170TDI.bigWig\ color 0,176,240\ longLabel Heart right ventricle tissue male adult 40 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473DVS Signal\ track wgEncodeReg4Epigenetics_ENCFF170TDI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF025KMX ENCSR551QJT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRA THRA peaks 4 3358 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/74092307-1461-4912-bb57-1ae6256baee9/ENCFF025KMX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRA THRA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR551QJT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF025KMX\ type bigBed 5\ useScore 1\ visibility squish\ DuodenumFetalDonor1TechRep2_CNhs12997_ctss_fwd DuodenumFetalD1Tr2+ bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward 0 3359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep2_CNhs12997_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_tpm_fwd DuodenumFetalD1Tr2+ bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward 1 3359 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuodenumFetalDonor1TechRep2_CNhs12997_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF819VFY ENCSR473LSX Peak bigBed 5 T-cell male adult 38 years DNase peak 4 3359 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/60c5aec5-a2a5-4099-99de-1bb863ee9e29/ENCFF819VFY.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 38 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473LSX Peak\ track wgEncodeReg4Epigenetics_ENCFF819VFY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF400FMP ENCSR551QJT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRA THRA ENCSR551QJT signal 2 3359 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/0442d131-66c2-4068-ab1b-b81c2670986a/ENCFF400FMP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THRA THRA ENCSR551QJT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR551QJT Signal\ track wgEncodeReg4TfChip_ENCFF400FMP\ type bigWig\ visibility full\ DuodenumFetalDonor1TechRep2_CNhs12997_ctss_rev DuodenumFetalD1Tr2- bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse 0 3360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuodenumFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep2_CNhs12997_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ DuodenumFetalDonor1TechRep2_CNhs12997_tpm_rev DuodenumFetalD1Tr2- bigWig duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse 1 3360 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/duodenum%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12997.10071-101I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel duodenum, fetal, donor1, tech_rep2_CNhs12997_10071-101I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10071-101I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuodenumFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuodenumFetalDonor1TechRep2_CNhs12997_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10071-101I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF505HUJ ENCSR473LSX Signal bigWig T-cell male adult 38 years DNase signal 2 3360 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/e556155a-03cc-4966-9171-4263a456e91b/ENCFF505HUJ.bigWig\ color 6,218,147\ longLabel T-cell male adult 38 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473LSX Signal\ track wgEncodeReg4Epigenetics_ENCFF505HUJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF995GXC ENCSR552XSN Peak bigBed 5 GM12878 MLLT1 peaks 4 3360 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ddf17d1c-bbf2-4b0d-8f1b-4d72a8fa67bd/ENCFF995GXC.bigBed\ labelFields none\ longLabel GM12878 MLLT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR552XSN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF995GXC\ type bigBed 5\ useScore 1\ visibility squish\ DuraMaterAdultDonor1_CNhs10648_ctss_fwd DuraMaterAdultD1+ bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_forward 0 3361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuraMaterAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuraMaterAdultDonor1_CNhs10648_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_tpm_fwd DuraMaterAdultD1+ bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_forward 1 3361 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuraMaterAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track DuraMaterAdultDonor1_CNhs10648_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF080FBH ENCSR473PNT Peak bigBed 5 Mesendoderm originated from H1 H3K27ac peak 4 3361 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/2e35ba16-e7b0-4f2f-942c-b8700aaa24d6/ENCFF080FBH.bigBed\ color 181,145,0\ longLabel Mesendoderm originated from H1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473PNT Peak\ track wgEncodeReg4Epigenetics_ENCFF080FBH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF282NSB ENCSR552XSN Signal bigWig GM12878 MLLT1 ENCSR552XSN signal 2 3361 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/89acfc4a-74c1-42e3-a70e-cbab6b15ca71/ENCFF282NSB.bigWig\ color 254,75,173\ longLabel GM12878 MLLT1 ENCSR552XSN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR552XSN Signal\ track wgEncodeReg4TfChip_ENCFF282NSB\ type bigWig\ visibility full\ DuraMaterAdultDonor1_CNhs10648_ctss_rev DuraMaterAdultD1- bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_reverse 0 3362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel DuraMaterAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuraMaterAdultDonor1_CNhs10648_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ DuraMaterAdultDonor1_CNhs10648_tpm_rev DuraMaterAdultD1- bigWig dura mater, adult, donor1_CNhs10648_10041-101F5_reverse 1 3362 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/dura%20mater%2c%20adult%2c%20donor1.CNhs10648.10041-101F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel dura mater, adult, donor1_CNhs10648_10041-101F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10041-101F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel DuraMaterAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track DuraMaterAdultDonor1_CNhs10648_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10041-101F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF052XMR ENCSR473PNT Signal bigWig Mesendoderm originated from H1 H3K27ac signal 2 3362 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/d5d569ce-ac68-415e-8d0e-cb36e7ae9a32/ENCFF052XMR.bigWig\ color 181,145,0\ longLabel Mesendoderm originated from H1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473PNT Signal\ track wgEncodeReg4Epigenetics_ENCFF052XMR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF047YKA ENCSR552YGL Peak bigBed 5 K562 stably expressing NFE2 NFE2 peaks 4 3362 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/bf6279ed-ab94-4141-af7d-d6ace13c5d6a/ENCFF047YKA.bigBed\ labelFields none\ longLabel K562 stably expressing NFE2 NFE2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR552YGL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF047YKA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF182YQI ENCSR473VWE Peak bigBed 5 Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K27ac peak 4 3363 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/4c4ede72-2913-48ae-ac38-7e5d973d66e7/ENCFF182YQI.bigBed\ color 181,145,0\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473VWE Peak\ track wgEncodeReg4Epigenetics_ENCFF182YQI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF340VXL ENCSR552YGL Signal bigWig K562 stably expressing NFE2 NFE2 ENCSR552YGL signal 2 3363 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/b37adf72-4891-4e72-80bb-d57795c4c58f/ENCFF340VXL.bigWig\ color 254,75,173\ longLabel K562 stably expressing NFE2 NFE2 ENCSR552YGL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR552YGL Signal\ track wgEncodeReg4TfChip_ENCFF340VXL\ type bigWig\ visibility full\ EpididymisAdult_CNhs12847_ctss_fwd EpididymisAdult+ bigWig epididymis, adult_CNhs12847_10197-103E8_forward 0 3363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel epididymis, adult_CNhs12847_10197-103E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EpididymisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EpididymisAdult_CNhs12847_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_tpm_fwd EpididymisAdult+ bigWig epididymis, adult_CNhs12847_10197-103E8_forward 1 3363 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel epididymis, adult_CNhs12847_10197-103E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EpididymisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EpididymisAdult_CNhs12847_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF377XTR ENCSR473VWE Signal bigWig Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K27ac signal 2 3364 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/dd02c2cf-cd88-49ef-b8d2-fbc981360888/ENCFF377XTR.bigWig\ color 181,145,0\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 42 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR473VWE Signal\ track wgEncodeReg4Epigenetics_ENCFF377XTR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF395LSO ENCSR552YWL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF12 KLF12 peaks 4 3364 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/c63fef0a-f543-4703-97ab-720f310d4bd7/ENCFF395LSO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF12 KLF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR552YWL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF395LSO\ type bigBed 5\ useScore 1\ visibility squish\ EpididymisAdult_CNhs12847_ctss_rev EpididymisAdult- bigWig epididymis, adult_CNhs12847_10197-103E8_reverse 0 3364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel epididymis, adult_CNhs12847_10197-103E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EpididymisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EpididymisAdult_CNhs12847_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ EpididymisAdult_CNhs12847_tpm_rev EpididymisAdult- bigWig epididymis, adult_CNhs12847_10197-103E8_reverse 1 3364 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/epididymis%2c%20adult.CNhs12847.10197-103E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel epididymis, adult_CNhs12847_10197-103E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10197-103E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EpididymisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EpididymisAdult_CNhs12847_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10197-103E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF426WBQ ENCSR474GZQ Peak bigBed 5 Retina tissue embryo 125 days and male embryo 103 days DNase peak 4 3365 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/be77a354-8269-4660-98a6-642f46d0abe2/ENCFF426WBQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Retina tissue embryo 125 days and male embryo 103 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474GZQ Peak\ track wgEncodeReg4Epigenetics_ENCFF426WBQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF017BBL ENCSR552YWL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF12 KLF12 ENCSR552YWL signal 2 3365 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/142a8116-b18f-404a-ae8b-aceb41c21b06/ENCFF017BBL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF12 KLF12 ENCSR552YWL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR552YWL Signal\ track wgEncodeReg4TfChip_ENCFF017BBL\ type bigWig\ visibility full\ EsophagusAdultPool1_CNhs10620_ctss_fwd EsophagusAdultPl1+ bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_forward 0 3365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EsophagusAdultPool1_CNhs10620_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_tpm_fwd EsophagusAdultPl1+ bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_forward 1 3365 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EsophagusAdultPool1_CNhs10620_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF064DIM ENCSR474GZQ Signal bigWig Retina tissue embryo 125 days and male embryo 103 days DNase signal 2 3366 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/1d52add0-155e-4924-bf64-5602062f7999/ENCFF064DIM.bigWig\ color 6,218,147\ longLabel Retina tissue embryo 125 days and male embryo 103 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474GZQ Signal\ track wgEncodeReg4Epigenetics_ENCFF064DIM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF502NWS ENCSR553NTC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF134 ZNF134 peaks 4 3366 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d80c12fd-b4de-4548-983e-1f36d42db1bb/ENCFF502NWS.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF134 ZNF134 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR553NTC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF502NWS\ type bigBed 5\ useScore 1\ visibility squish\ EsophagusAdultPool1_CNhs10620_ctss_rev EsophagusAdultPl1- bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_reverse 0 3366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EsophagusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EsophagusAdultPool1_CNhs10620_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ EsophagusAdultPool1_CNhs10620_tpm_rev EsophagusAdultPl1- bigWig esophagus, adult, pool1_CNhs10620_10015-101C6_reverse 1 3366 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/esophagus%2c%20adult%2c%20pool1.CNhs10620.10015-101C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel esophagus, adult, pool1_CNhs10620_10015-101C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10015-101C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EsophagusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EsophagusAdultPool1_CNhs10620_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10015-101C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF369RRS ENCSR474HQW Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours DNase peak 4 3367 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/e7baa8e4-dd50-4854-a03b-7f9390a02e03/ENCFF369RRS.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474HQW Peak\ track wgEncodeReg4Epigenetics_ENCFF369RRS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF354ZOM ENCSR553NTC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF134 ZNF134 ENCSR553NTC signal 2 3367 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/dd8ddefe-d411-4595-921f-648e66b1cdbc/ENCFF354ZOM.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF134 ZNF134 ENCSR553NTC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR553NTC Signal\ track wgEncodeReg4TfChip_ENCFF354ZOM\ type bigWig\ visibility full\ EyeFetalDonor1_CNhs11762_ctss_fwd EyeFetalD1+ bigWig eye, fetal, donor1_CNhs11762_10054-101G9_forward 0 3367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeFetalDonor1_CNhs11762_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_tpm_fwd EyeFetalD1+ bigWig eye, fetal, donor1_CNhs11762_10054-101G9_forward 1 3367 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeFetalDonor1_CNhs11762_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF017ULV ENCSR474HQW Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours DNase signal 2 3368 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/385f09cb-de95-4927-8f55-1b69427a2d02/ENCFF017ULV.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474HQW Signal\ track wgEncodeReg4Epigenetics_ENCFF017ULV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF983XQI ENCSR553QMC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 peaks 4 3368 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/9c2226d8-9b6c-4b1d-b8b9-6824f93b705d/ENCFF983XQI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR553QMC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF983XQI\ type bigBed 5\ useScore 1\ visibility squish\ EyeFetalDonor1_CNhs11762_ctss_rev EyeFetalD1- bigWig eye, fetal, donor1_CNhs11762_10054-101G9_reverse 0 3368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeFetalDonor1_CNhs11762_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ EyeFetalDonor1_CNhs11762_tpm_rev EyeFetalD1- bigWig eye, fetal, donor1_CNhs11762_10054-101G9_reverse 1 3368 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%2c%20fetal%2c%20donor1.CNhs11762.10054-101G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye, fetal, donor1_CNhs11762_10054-101G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10054-101G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeFetalDonor1_CNhs11762_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10054-101G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF976XOV ENCSR474PYR Peak bigBed 5 Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak 4 3369 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/8ce5cc15-6ab1-4afa-a41a-983bc4b5ec30/ENCFF976XOV.bigBed\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474PYR Peak\ track wgEncodeReg4Epigenetics_ENCFF976XOV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF797JXT ENCSR553QMC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 ENCSR553QMC signal 2 3369 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/41264a78-5eda-458c-a26a-30873f385834/ENCFF797JXT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF7 ZNF7 ENCSR553QMC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR553QMC Signal\ track wgEncodeReg4TfChip_ENCFF797JXT\ type bigWig\ visibility full\ EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_fwd EyeMuscleInferiorRectusD1+ bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward 0 3369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleInferiorRectusD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_fwd EyeMuscleInferiorRectusD1+ bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward 1 3369 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleInferiorRectusD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF621DMX ENCSR474PYR Signal bigWig Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal 2 3370 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/16649c4f-74f7-4cc3-8f94-1b9f84cf68ba/ENCFF621DMX.bigWig\ color 181,145,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474PYR Signal\ track wgEncodeReg4Epigenetics_ENCFF621DMX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF490CXR ENCSR554YEH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOE1 TOE1 peaks 4 3370 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/37b5efaa-deb3-4f12-ba76-7b6bfdf36869/ENCFF490CXR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOE1 TOE1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR554YEH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF490CXR\ type bigBed 5\ useScore 1\ visibility squish\ EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_rev EyeMuscleInferiorRectusD1- bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse 0 3370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleInferiorRectusD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleInferiorRectusDonor1_CNhs13444_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_rev EyeMuscleInferiorRectusD1- bigWig eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse 1 3370 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20inferior%20rectus%2c%20donor1.CNhs13444.10272-104E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle inferior rectus, donor1_CNhs13444_10272-104E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10272-104E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleInferiorRectusD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleInferiorRectusDonor1_CNhs13444_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10272-104E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF677LVV ENCSR474XFV Peak bigBed 5 Thyroid gland tissue male adult 54 years ATAC peak 4 3371 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/f6a94d99-1241-4cb3-87cb-4ebd281f43db/ENCFF677LVV.bigBed\ color 2,199,185\ longLabel Thyroid gland tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474XFV Peak\ track wgEncodeReg4Epigenetics_ENCFF677LVV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF838WZJ ENCSR554YEH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOE1 TOE1 ENCSR554YEH signal 2 3371 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/f76ea483-f8eb-41c1-81ec-d2e93608cce7/ENCFF838WZJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOE1 TOE1 ENCSR554YEH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR554YEH Signal\ track wgEncodeReg4TfChip_ENCFF838WZJ\ type bigWig\ visibility full\ EyeMuscleLateralDonor2_CNhs13442_ctss_fwd EyeMuscleLateralD2+ bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward 0 3371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleLateralD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleLateralDonor2_CNhs13442_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_tpm_fwd EyeMuscleLateralD2+ bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward 1 3371 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleLateralD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleLateralDonor2_CNhs13442_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF974RPS ENCSR474XFV Signal bigWig Thyroid gland tissue male adult 54 years ATAC signal 2 3372 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/e080cb08-11e8-4bcd-ab7e-53aaad6cbf44/ENCFF974RPS.bigWig\ color 2,199,185\ longLabel Thyroid gland tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR474XFV Signal\ track wgEncodeReg4Epigenetics_ENCFF974RPS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF138DXQ ENCSR555DCD Peak bigBed 5 Ascending aorta tissue female adult (53 years) CTCF peaks 4 3372 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f35e3682-c928-4bec-bec9-574096d82875/ENCFF138DXQ.bigBed\ labelFields none\ longLabel Ascending aorta tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR555DCD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF138DXQ\ type bigBed 5\ useScore 1\ visibility squish\ EyeMuscleLateralDonor2_CNhs13442_ctss_rev EyeMuscleLateralD2- bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse 0 3372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleLateralD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleLateralDonor2_CNhs13442_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ EyeMuscleLateralDonor2_CNhs13442_tpm_rev EyeMuscleLateralD2- bigWig eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse 1 3372 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20lateral%2c%20donor2.CNhs13442.10298-104H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle lateral, donor2_CNhs13442_10298-104H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10298-104H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleLateralD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleLateralDonor2_CNhs13442_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10298-104H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF610IYC ENCSR475VQD Peak bigBed 5 Brain tissue male embryo 72 days and male embryo 76 days DNase peak 4 3373 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/f39f0f87-f51c-407e-8e98-27985eebfa44/ENCFF610IYC.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue male embryo 72 days and male embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR475VQD Peak\ track wgEncodeReg4Epigenetics_ENCFF610IYC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF857NIC ENCSR555DCD Signal bigWig Ascending aorta tissue female adult (53 years) CTCF ENCSR555DCD signal 2 3373 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/2f463128-ba7b-4cb8-8602-aabfbd730b32/ENCFF857NIC.bigWig\ color 255,37,41\ longLabel Ascending aorta tissue female adult (53 years) CTCF ENCSR555DCD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR555DCD Signal\ track wgEncodeReg4TfChip_ENCFF857NIC\ type bigWig\ visibility full\ EyeMuscleMedialDonor2_CNhs13443_ctss_fwd EyeMuscleMedialD2+ bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_forward 0 3373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleMedialD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleMedialDonor2_CNhs13443_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_tpm_fwd EyeMuscleMedialD2+ bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_forward 1 3373 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleMedialD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleMedialDonor2_CNhs13443_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF586GWE ENCSR475VQD Signal bigWig Brain tissue male embryo 72 days and male embryo 76 days DNase signal 2 3374 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ffd0cc4b-0abd-498a-be12-e1b570c0fa50/ENCFF586GWE.bigWig\ color 6,218,147\ longLabel Brain tissue male embryo 72 days and male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR475VQD Signal\ track wgEncodeReg4Epigenetics_ENCFF586GWE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF558JLG ENCSR555PBN Peak bigBed 5 MCF-7 MAFK peaks 4 3374 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/2a8180eb-fbd5-48b9-b58c-27bc8a956539/ENCFF558JLG.bigBed\ labelFields none\ longLabel MCF-7 MAFK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR555PBN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF558JLG\ type bigBed 5\ useScore 1\ visibility squish\ EyeMuscleMedialDonor2_CNhs13443_ctss_rev EyeMuscleMedialD2- bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse 0 3374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleMedialD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleMedialDonor2_CNhs13443_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ EyeMuscleMedialDonor2_CNhs13443_tpm_rev EyeMuscleMedialD2- bigWig eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse 1 3374 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20medial%2c%20donor2.CNhs13443.10299-104H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle medial, donor2_CNhs13443_10299-104H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10299-104H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleMedialD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleMedialDonor2_CNhs13443_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10299-104H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF325YCY ENCSR476IPR Peak bigBed 5 Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac peak 4 3375 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/971ad599-ada4-4c19-82f3-ab5b1b633adf/ENCFF325YCY.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476IPR Peak\ track wgEncodeReg4Epigenetics_ENCFF325YCY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF773TNK ENCSR555PBN Signal bigWig MCF-7 MAFK ENCSR555PBN signal 2 3375 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/95c57ee2-8a46-4ced-8ac2-94a48ca4cae7/ENCFF773TNK.bigWig\ color 65,171,173\ longLabel MCF-7 MAFK ENCSR555PBN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR555PBN Signal\ track wgEncodeReg4TfChip_ENCFF773TNK\ type bigWig\ visibility full\ EyeMuscleSuperiorDonor2_CNhs13441_ctss_fwd EyeMuscleSuperiorD2+ bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_forward 0 3375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleSuperiorD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleSuperiorDonor2_CNhs13441_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_tpm_fwd EyeMuscleSuperiorD2+ bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_forward 1 3375 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleSuperiorD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeMuscleSuperiorDonor2_CNhs13441_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF409QDV ENCSR476IPR Signal bigWig Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac signal 2 3376 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9feb0a54-7eba-49d5-b9cf-6fa74ef2c142/ENCFF409QDV.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476IPR Signal\ track wgEncodeReg4Epigenetics_ENCFF409QDV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF277EOU ENCSR555ZMV Peak bigBed 5 HepG2 AGO1 peaks 4 3376 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d4208fc8-f3a4-4f40-a945-3cc4652cae93/ENCFF277EOU.bigBed\ labelFields none\ longLabel HepG2 AGO1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR555ZMV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF277EOU\ type bigBed 5\ useScore 1\ visibility squish\ EyeMuscleSuperiorDonor2_CNhs13441_ctss_rev EyeMuscleSuperiorD2- bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse 0 3376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeMuscleSuperiorD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleSuperiorDonor2_CNhs13441_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ EyeMuscleSuperiorDonor2_CNhs13441_tpm_rev EyeMuscleSuperiorD2- bigWig eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse 1 3376 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20muscle%20superior%2c%20donor2.CNhs13441.10297-104G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - muscle superior, donor2_CNhs13441_10297-104G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10297-104G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeMuscleSuperiorD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeMuscleSuperiorDonor2_CNhs13441_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10297-104G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF084WSV ENCSR476SDZ Peak bigBed 5 Muscle of back tissue male embryo 108 days DNase peak 4 3377 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/edafbc66-0c4e-4af5-a9e1-5ddfa61e3ba3/ENCFF084WSV.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of back tissue male embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476SDZ Peak\ track wgEncodeReg4Epigenetics_ENCFF084WSV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF699ZZE ENCSR555ZMV Signal bigWig HepG2 AGO1 ENCSR555ZMV signal 2 3377 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/00eb7914-e718-4790-a84e-da658108bcae/ENCFF699ZZE.bigWig\ color 137,152,82\ longLabel HepG2 AGO1 ENCSR555ZMV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR555ZMV Signal\ track wgEncodeReg4TfChip_ENCFF699ZZE\ type bigWig\ visibility full\ EyeVitreousHumorDonor1_CNhs13440_ctss_fwd EyeVitreousHumorD1+ bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward 0 3377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeVitreousHumorD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeVitreousHumorDonor1_CNhs13440_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_tpm_fwd EyeVitreousHumorD1+ bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward 1 3377 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeVitreousHumorD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track EyeVitreousHumorDonor1_CNhs13440_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF123UWT ENCSR476SDZ Signal bigWig Muscle of back tissue male embryo 108 days DNase signal 2 3378 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/d3a37ef3-2f16-4e69-ae57-708427e09c41/ENCFF123UWT.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476SDZ Signal\ track wgEncodeReg4Epigenetics_ENCFF123UWT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF576OTX ENCSR557JTZ Peak bigBed 5 MCF-7 GTF2F1 peaks 4 3378 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/ddcf6fdb-a624-4af3-a566-17588e978a24/ENCFF576OTX.bigBed\ labelFields none\ longLabel MCF-7 GTF2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR557JTZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF576OTX\ type bigBed 5\ useScore 1\ visibility squish\ EyeVitreousHumorDonor1_CNhs13440_ctss_rev EyeVitreousHumorD1- bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse 0 3378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel EyeVitreousHumorD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeVitreousHumorDonor1_CNhs13440_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ EyeVitreousHumorDonor1_CNhs13440_tpm_rev EyeVitreousHumorD1- bigWig eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse 1 3378 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/eye%20-%20vitreous%20humor%2c%20donor1.CNhs13440.10268-104D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel eye - vitreous humor, donor1_CNhs13440_10268-104D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10268-104D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel EyeVitreousHumorD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track EyeVitreousHumorDonor1_CNhs13440_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10268-104D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF878JSH ENCSR476VJY Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years ATAC peak 4 3379 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/d9c6f2c5-9482-49f7-b7ce-3c0721ec7cb0/ENCFF878JSH.bigBed\ color 2,199,185\ longLabel CD8-positive, alpha-beta T cell male adult 21 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476VJY Peak\ track wgEncodeReg4Epigenetics_ENCFF878JSH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF270QNR ENCSR557JTZ Signal bigWig MCF-7 GTF2F1 ENCSR557JTZ signal 2 3379 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/46ceb7e5-322f-48aa-aec3-46a3309da08f/ENCFF270QNR.bigWig\ color 65,171,173\ longLabel MCF-7 GTF2F1 ENCSR557JTZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR557JTZ Signal\ track wgEncodeReg4TfChip_ENCFF270QNR\ type bigWig\ visibility full\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_fwd FingernailD2+ bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward 0 3379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FingernailD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_fwd FingernailD2+ bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward 1 3379 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FingernailD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF308HXP ENCSR476VJY Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years ATAC signal 2 3380 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/f64a6352-142e-4aa7-9988-90165b097130/ENCFF308HXP.bigWig\ color 2,199,185\ longLabel CD8-positive, alpha-beta T cell male adult 21 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476VJY Signal\ track wgEncodeReg4Epigenetics_ENCFF308HXP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF344EFR ENCSR557RVF Peak bigBed 5 K562 ZHX1 peaks 4 3380 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f9a6d118-2ab9-48ae-a84e-db06953ce67a/ENCFF344EFR.bigBed\ labelFields none\ longLabel K562 ZHX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR557RVF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF344EFR\ type bigBed 5\ useScore 1\ visibility squish\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_rev FingernailD2- bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse 0 3380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FingernailD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_rev FingernailD2- bigWig Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse 1 3380 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Fingernail%20%28including%20nail%20plate%2c%20eponychium%20and%20hyponychium%29%2c%20donor2.CNhs13445.10301-104H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Fingernail (including nail plate, eponychium and hyponychium), donor2_CNhs13445_10301-104H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10301-104H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FingernailD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FingernailIncludingNailPlateEponychiumAndHyponychiumDonor2_CNhs13445_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10301-104H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF202HFP ENCSR476WNA Peak bigBed 5 Ovary tissue female adult 47 years ATAC peak 4 3381 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/ef4aeddc-1fd0-43fa-9846-9a8234e61d5b/ENCFF202HFP.bigBed\ color 2,199,185\ longLabel Ovary tissue female adult 47 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476WNA Peak\ track wgEncodeReg4Epigenetics_ENCFF202HFP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF526AHK ENCSR557RVF Signal bigWig K562 ZHX1 ENCSR557RVF signal 2 3381 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6080d8e6-b712-4789-942d-3266d40566c5/ENCFF526AHK.bigWig\ color 254,75,173\ longLabel K562 ZHX1 ENCSR557RVF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR557RVF Signal\ track wgEncodeReg4TfChip_ENCFF526AHK\ type bigWig\ visibility full\ FrontalLobeAdultPool1_CNhs10647_ctss_fwd FrontalLobeAdultPl1+ bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward 0 3381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FrontalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FrontalLobeAdultPool1_CNhs10647_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_tpm_fwd FrontalLobeAdultPl1+ bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward 1 3381 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FrontalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track FrontalLobeAdultPool1_CNhs10647_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF567XSR ENCSR476WNA Signal bigWig Ovary tissue female adult 47 years ATAC signal 2 3382 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/07ffb9c8-b534-4641-ad45-7d37cb696a33/ENCFF567XSR.bigWig\ color 2,199,185\ longLabel Ovary tissue female adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR476WNA Signal\ track wgEncodeReg4Epigenetics_ENCFF567XSR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF558VAH ENCSR558HTE Peak bigBed 5 Transverse colon tissue female adult (51 years) CTCF peaks 4 3382 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/dcffa870-26fe-4588-827e-90c5532e3eb2/ENCFF558VAH.bigBed\ labelFields none\ longLabel Transverse colon tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR558HTE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF558VAH\ type bigBed 5\ useScore 1\ visibility squish\ FrontalLobeAdultPool1_CNhs10647_ctss_rev FrontalLobeAdultPl1- bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse 0 3382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel FrontalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FrontalLobeAdultPool1_CNhs10647_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ FrontalLobeAdultPool1_CNhs10647_tpm_rev FrontalLobeAdultPl1- bigWig frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse 1 3382 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/frontal%20lobe%2c%20adult%2c%20pool1.CNhs10647.10040-101F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel frontal lobe, adult, pool1_CNhs10647_10040-101F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10040-101F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel FrontalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track FrontalLobeAdultPool1_CNhs10647_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10040-101F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF355TRA ENCSR477BHF Peak bigBed 5 Temporal lobe tissue female adult 75 years H3K4me3 peak 4 3383 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/095b5269-8cb0-4f2e-a496-7627bf1d1d1d/ENCFF355TRA.bigBed\ color 255,0,0\ longLabel Temporal lobe tissue female adult 75 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477BHF Peak\ track wgEncodeReg4Epigenetics_ENCFF355TRA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF349LWW ENCSR558HTE Signal bigWig Transverse colon tissue female adult (51 years) CTCF ENCSR558HTE signal 2 3383 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/caea5ab5-f083-482e-817d-6563af11fb68/ENCFF349LWW.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (51 years) CTCF ENCSR558HTE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR558HTE Signal\ track wgEncodeReg4TfChip_ENCFF349LWW\ type bigWig\ visibility full\ GallBladderAdult_CNhs12848_ctss_fwd GallBladderAdult+ bigWig gall bladder, adult_CNhs12848_10198-103E9_forward 0 3383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel gall bladder, adult_CNhs12848_10198-103E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GallBladderAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GallBladderAdult_CNhs12848_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_tpm_fwd GallBladderAdult+ bigWig gall bladder, adult_CNhs12848_10198-103E9_forward 1 3383 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel gall bladder, adult_CNhs12848_10198-103E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GallBladderAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GallBladderAdult_CNhs12848_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF290HDV ENCSR477BHF Signal bigWig Temporal lobe tissue female adult 75 years H3K4me3 signal 2 3384 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/ab62ff2d-f857-4622-a3a8-08a86be46ffc/ENCFF290HDV.bigWig\ color 255,0,0\ longLabel Temporal lobe tissue female adult 75 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477BHF Signal\ track wgEncodeReg4Epigenetics_ENCFF290HDV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF717XKC ENCSR558OMR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1 TFDP1 peaks 4 3384 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/bcd1e088-48ca-444a-b8b0-6230a5c08b00/ENCFF717XKC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1 TFDP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR558OMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF717XKC\ type bigBed 5\ useScore 1\ visibility squish\ GallBladderAdult_CNhs12848_ctss_rev GallBladderAdult- bigWig gall bladder, adult_CNhs12848_10198-103E9_reverse 0 3384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel gall bladder, adult_CNhs12848_10198-103E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GallBladderAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GallBladderAdult_CNhs12848_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ GallBladderAdult_CNhs12848_tpm_rev GallBladderAdult- bigWig gall bladder, adult_CNhs12848_10198-103E9_reverse 1 3384 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/gall%20bladder%2c%20adult.CNhs12848.10198-103E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel gall bladder, adult_CNhs12848_10198-103E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10198-103E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GallBladderAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GallBladderAdult_CNhs12848_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10198-103E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF529XHE ENCSR477IQW Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF DNase peak 4 3385 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/dc841d3f-3d37-4168-b6a2-8bc6dbd0604f/ENCFF529XHE.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477IQW Peak\ track wgEncodeReg4Epigenetics_ENCFF529XHE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF381PES ENCSR558OMR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1 TFDP1 ENCSR558OMR signal 2 3385 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a0615058-0ec4-404d-ad19-badedb51f401/ENCFF381PES.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFDP1 TFDP1 ENCSR558OMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR558OMR Signal\ track wgEncodeReg4TfChip_ENCFF381PES\ type bigWig\ visibility full\ GlobusPallidusAdultDonor10196_CNhs13801_ctss_fwd GlobusPallidusAdultD10196+ bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward 0 3385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10196_CNhs13801_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_tpm_fwd GlobusPallidusAdultD10196+ bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward 1 3385 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10196_CNhs13801_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF696KWO ENCSR477IQW Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF DNase signal 2 3386 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/b9b6151e-9305-4040-b42d-fe4c618dc5ee/ENCFF696KWO.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477IQW Signal\ track wgEncodeReg4Epigenetics_ENCFF696KWO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF835SGA ENCSR559IOZ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZXDB ZXDB peaks 4 3386 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f79e404e-87b5-4e00-a63e-7fa8e9822b4a/ENCFF835SGA.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZXDB ZXDB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR559IOZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF835SGA\ type bigBed 5\ useScore 1\ visibility squish\ GlobusPallidusAdultDonor10196_CNhs13801_ctss_rev GlobusPallidusAdultD10196- bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse 0 3386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10196_CNhs13801_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10196_CNhs13801_tpm_rev GlobusPallidusAdultD10196- bigWig globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse 1 3386 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%20-%20adult%2c%20donor10196.CNhs13801.10175-103C4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus - adult, donor10196_CNhs13801_10175-103C4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10175-103C4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10196_CNhs13801_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10175-103C4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF423QOA ENCSR477RTP Peak bigBed 5 IMR-90 DNase peak 4 3387 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/24864593-21f9-4b29-8649-7a80b8fc70e1/ENCFF423QOA.bigBed\ color 6,218,147\ labelFields none\ longLabel IMR-90 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477RTP Peak\ track wgEncodeReg4Epigenetics_ENCFF423QOA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF741ADU ENCSR559IOZ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZXDB ZXDB ENCSR559IOZ signal 2 3387 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/111e269e-a1d2-41d7-964c-0e54fa3d24a6/ENCFF741ADU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZXDB ZXDB ENCSR559IOZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR559IOZ Signal\ track wgEncodeReg4TfChip_ENCFF741ADU\ type bigWig\ visibility full\ GlobusPallidusAdultDonor10252_CNhs12319_ctss_fwd GlobusPallidusAdultD10252+ bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward 0 3387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10252_CNhs12319_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_tpm_fwd GlobusPallidusAdultD10252+ bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward 1 3387 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10252_CNhs12319_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF971HXR ENCSR477RTP Signal bigWig IMR-90 DNase signal 2 3388 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/eeee0c89-07c3-47de-97a7-6850c18d6227/ENCFF971HXR.bigWig\ color 6,218,147\ longLabel IMR-90 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477RTP Signal\ track wgEncodeReg4Epigenetics_ENCFF971HXR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF421MEH ENCSR559KAB Peak bigBed 5 Esophagus muscularis mucosa tissue male adult (37 years) CTCF peaks 4 3388 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4b3a8058-1953-4bea-b7d9-9c4d5378e07b/ENCFF421MEH.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR559KAB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF421MEH\ type bigBed 5\ useScore 1\ visibility squish\ GlobusPallidusAdultDonor10252_CNhs12319_ctss_rev GlobusPallidusAdultD10252- bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse 0 3388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10252_CNhs12319_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10252_CNhs12319_tpm_rev GlobusPallidusAdultD10252- bigWig globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse 1 3388 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10252.CNhs12319.10161-103A8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10252_CNhs12319_10161-103A8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10161-103A8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10252_CNhs12319_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10161-103A8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF048WZD ENCSR477YSU Peak bigBed 5 Activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC peak 4 3389 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/fb8d81f6-4ec4-4001-bdb3-7c8e8588b86a/ENCFF048WZD.bigBed\ color 2,199,185\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477YSU Peak\ track wgEncodeReg4Epigenetics_ENCFF048WZD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF526HRV ENCSR559KAB Signal bigWig Esophagus muscularis mucosa tissue male adult (37 years) CTCF ENCSR559KAB signal 2 3389 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/dc1fde47-004a-4253-810a-8854b4cb176e/ENCFF526HRV.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue male adult (37 years) CTCF ENCSR559KAB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR559KAB Signal\ track wgEncodeReg4TfChip_ENCFF526HRV\ type bigWig\ visibility full\ GlobusPallidusAdultDonor10258_CNhs14549_ctss_fwd GlobusPallidusAdultD10258+ bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward 0 3389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10258_CNhs14549_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_tpm_fwd GlobusPallidusAdultD10258+ bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward 1 3389 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusAdultDonor10258_CNhs14549_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF610LQJ ENCSR477YSU Signal bigWig Activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC signal 2 3390 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/07/07ee704b-a294-4995-b6f8-2e409a354ca5/ENCFF610LQJ.bigWig\ color 2,199,185\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477YSU Signal\ track wgEncodeReg4Epigenetics_ENCFF610LQJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF944PRH ENCSR559ZKI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2 NR2C2 peaks 4 3390 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/274eaf0c-8fc5-45d8-bbb7-35fef8f7342f/ENCFF944PRH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2 NR2C2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR559ZKI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF944PRH\ type bigBed 5\ useScore 1\ visibility squish\ GlobusPallidusAdultDonor10258_CNhs14549_ctss_rev GlobusPallidusAdultD10258- bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse 0 3390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10258_CNhs14549_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ GlobusPallidusAdultDonor10258_CNhs14549_tpm_rev GlobusPallidusAdultD10258- bigWig globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse 1 3390 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20adult%2c%20donor10258.CNhs14549.10367-105F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, adult, donor10258_CNhs14549_10367-105F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10367-105F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusAdultDonor10258_CNhs14549_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10367-105F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF009DEU ENCSR477YZA Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 ATAC peak 4 3391 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/e4c9ba37-544b-4059-acfb-d305d6c03143/ENCFF009DEU.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477YZA Peak\ track wgEncodeReg4Epigenetics_ENCFF009DEU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF860GQY ENCSR559ZKI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2 NR2C2 ENCSR559ZKI signal 2 3391 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/99fd39cd-2253-4812-b421-bfbd710662ed/ENCFF860GQY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2C2 NR2C2 ENCSR559ZKI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR559ZKI Signal\ track wgEncodeReg4TfChip_ENCFF860GQY\ type bigWig\ visibility full\ GlobusPallidusNewbornDonor10223_CNhs14082_ctss_fwd GlobusPallidusNbD10223+ bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward 0 3391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusNewbornDonor10223_CNhs14082_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_tpm_fwd GlobusPallidusNbD10223+ bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward 1 3391 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track GlobusPallidusNewbornDonor10223_CNhs14082_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF106XHY ENCSR477YZA Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 ATAC signal 2 3392 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/fca137b9-7749-4948-ae6b-79e3aa139efd/ENCFF106XHY.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR477YZA Signal\ track wgEncodeReg4Epigenetics_ENCFF106XHY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF210JUZ ENCSR560BUE Peak bigBed 5 MCF-7 CTCF peaks 4 3392 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/c199f52e-4f78-41d5-9b6d-9e607754cbb0/ENCFF210JUZ.bigBed\ labelFields none\ longLabel MCF-7 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR560BUE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF210JUZ\ type bigBed 5\ useScore 1\ visibility squish\ GlobusPallidusNewbornDonor10223_CNhs14082_ctss_rev GlobusPallidusNbD10223- bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse 0 3392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel GlobusPallidusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusNewbornDonor10223_CNhs14082_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ GlobusPallidusNewbornDonor10223_CNhs14082_tpm_rev GlobusPallidusNbD10223- bigWig globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse 1 3392 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/globus%20pallidus%2c%20newborn%2c%20donor10223.CNhs14082.10364-105F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel globus pallidus, newborn, donor10223_CNhs14082_10364-105F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10364-105F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel GlobusPallidusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track GlobusPallidusNewbornDonor10223_CNhs14082_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10364-105F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF259KVC ENCSR478SWA Peak bigBed 5 Activated CD4 positive, naive alpha-beta T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase peak 4 3393 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b6d2285f-cd86-4f8f-ae81-3c22487d662a/ENCFF259KVC.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR478SWA Peak\ track wgEncodeReg4Epigenetics_ENCFF259KVC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF157EYO ENCSR560BUE Signal bigWig MCF-7 CTCF ENCSR560BUE signal 2 3393 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/606b5036-794f-4582-b9be-c8ab7dd44619/ENCFF157EYO.bigWig\ color 65,171,173\ longLabel MCF-7 CTCF ENCSR560BUE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR560BUE Signal\ track wgEncodeReg4TfChip_ENCFF157EYO\ type bigWig\ visibility full\ HeartAdultDiseasedDonor1_CNhs11758_ctss_fwd HeartAdultDiseasedD1+ bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward 0 3393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedDonor1_CNhs11758_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_tpm_fwd HeartAdultDiseasedD1+ bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward 1 3393 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedDonor1_CNhs11758_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF443UTC ENCSR478SWA Signal bigWig Activated CD4 positive, naive alpha-beta T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase signal 2 3394 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/47b4c6cd-753f-4a8a-a27d-4f215735421b/ENCFF443UTC.bigWig\ color 6,218,147\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR478SWA Signal\ track wgEncodeReg4Epigenetics_ENCFF443UTC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF539ZAY ENCSR560SEP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRB RXRB peaks 4 3394 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/974de15d-4bfb-4970-9e36-83e3a25418ae/ENCFF539ZAY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRB RXRB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR560SEP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF539ZAY\ type bigBed 5\ useScore 1\ visibility squish\ HeartAdultDiseasedDonor1_CNhs11758_ctss_rev HeartAdultDiseasedD1- bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse 0 3394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedDonor1_CNhs11758_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedDonor1_CNhs11758_tpm_rev HeartAdultDiseasedD1- bigWig heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse 1 3394 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%2c%20donor1.CNhs11758.10051-101G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased, donor1_CNhs11758_10051-101G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10051-101G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedDonor1_CNhs11758_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10051-101G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF264BLT ENCSR479HKJ Peak bigBed 5 GM23248 H3K4me3 peak 4 3395 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/ae3959f5-7d94-40ad-a194-c6799033a9c0/ENCFF264BLT.bigBed\ color 255,0,0\ longLabel GM23248 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR479HKJ Peak\ track wgEncodeReg4Epigenetics_ENCFF264BLT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF054BBA ENCSR560SEP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRB RXRB ENCSR560SEP signal 2 3395 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6135ad85-42bc-446c-ba6c-f6afb033385b/ENCFF054BBA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RXRB RXRB ENCSR560SEP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR560SEP Signal\ track wgEncodeReg4TfChip_ENCFF054BBA\ type bigWig\ visibility full\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_fwd HeartAdultDiseasedPost-infarctionD1+ bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward 0 3395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedPost-infarctionD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_fwd HeartAdultDiseasedPost-infarctionD1+ bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward 1 3395 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedPost-infarctionD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF036OWY ENCSR479HKJ Signal bigWig GM23248 H3K4me3 signal 2 3396 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/3a164596-8b1b-4f4f-abf9-be9741aa3051/ENCFF036OWY.bigWig\ color 255,0,0\ longLabel GM23248 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR479HKJ Signal\ track wgEncodeReg4Epigenetics_ENCFF036OWY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF587VYG ENCSR561BQM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SIX1 SIX1 peaks 4 3396 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/21fe557b-ea8f-4d03-bd82-289cd957ee10/ENCFF587VYG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SIX1 SIX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR561BQM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF587VYG\ type bigBed 5\ useScore 1\ visibility squish\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_rev HeartAdultDiseasedPost-infarctionD1- bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse 0 3396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultDiseasedPost-infarctionD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_rev HeartAdultDiseasedPost-infarctionD1- bigWig heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse 1 3396 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20diseased%20post-infarction%2c%20donor1.CNhs11757.10050-101G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, diseased post-infarction, donor1_CNhs11757_10050-101G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10050-101G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultDiseasedPost-infarctionD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultDiseasedPostinfarctionDonor1_CNhs11757_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10050-101G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF703PBV ENCSR479IAH Peak bigBed 5 Osteocyte H3K27ac peak 4 3397 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/398fcc89-c0d7-4773-a85a-fb3ecadd796d/ENCFF703PBV.bigBed\ color 181,145,0\ longLabel Osteocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR479IAH Peak\ track wgEncodeReg4Epigenetics_ENCFF703PBV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF188CDP ENCSR561BQM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SIX1 SIX1 ENCSR561BQM signal 2 3397 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/1c6e87b6-66dc-4306-9bf2-6415701698a4/ENCFF188CDP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SIX1 SIX1 ENCSR561BQM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR561BQM Signal\ track wgEncodeReg4TfChip_ENCFF188CDP\ type bigWig\ visibility full\ HeartAdultPool1_CNhs10621_ctss_fwd HeartAdultPl1+ bigWig heart, adult, pool1_CNhs10621_10016-101C7_forward 0 3397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultPool1_CNhs10621_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_tpm_fwd HeartAdultPl1+ bigWig heart, adult, pool1_CNhs10621_10016-101C7_forward 1 3397 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartAdultPool1_CNhs10621_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF441MGU ENCSR479IAH Signal bigWig Osteocyte H3K27ac signal 2 3398 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/c7b06f7a-694b-4051-adeb-b8e57249dbc1/ENCFF441MGU.bigWig\ color 181,145,0\ longLabel Osteocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR479IAH Signal\ track wgEncodeReg4Epigenetics_ENCFF441MGU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF528GDC ENCSR562NOP Peak bigBed 5 DOHH2 EZH2phosphoT487 peaks 4 3398 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/f3f759d3-e83c-4be3-bf7a-5691726777f9/ENCFF528GDC.bigBed\ labelFields none\ longLabel DOHH2 EZH2phosphoT487 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR562NOP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF528GDC\ type bigBed 5\ useScore 1\ visibility squish\ HeartAdultPool1_CNhs10621_ctss_rev HeartAdultPl1- bigWig heart, adult, pool1_CNhs10621_10016-101C7_reverse 0 3398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultPool1_CNhs10621_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ HeartAdultPool1_CNhs10621_tpm_rev HeartAdultPl1- bigWig heart, adult, pool1_CNhs10621_10016-101C7_reverse 1 3398 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20adult%2c%20pool1.CNhs10621.10016-101C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, adult, pool1_CNhs10621_10016-101C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10016-101C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartAdultPool1_CNhs10621_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10016-101C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF964JDC ENCSR480SNC Peak bigBed 5 Naive B cell male adult 40 years DNase peak 4 3399 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/b54c7642-787c-441c-b0e3-c77414022739/ENCFF964JDC.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive B cell male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR480SNC Peak\ track wgEncodeReg4Epigenetics_ENCFF964JDC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF794FER ENCSR562NOP Signal bigWig DOHH2 EZH2phosphoT487 ENCSR562NOP signal 2 3399 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a56c7e21-b49b-4e87-b67e-e77e5f5a69ae/ENCFF794FER.bigWig\ color 254,75,173\ longLabel DOHH2 EZH2phosphoT487 ENCSR562NOP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR562NOP Signal\ track wgEncodeReg4TfChip_ENCFF794FER\ type bigWig\ visibility full\ HeartFetalPool1_CNhs10653_ctss_fwd HeartFetalPl1+ bigWig heart, fetal, pool1_CNhs10653_10046-101G1_forward 0 3399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartFetalPool1_CNhs10653_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_tpm_fwd HeartFetalPl1+ bigWig heart, fetal, pool1_CNhs10653_10046-101G1_forward 1 3399 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartFetalPool1_CNhs10653_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF207ATZ ENCSR480SNC Signal bigWig Naive B cell male adult 40 years DNase signal 2 3400 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/32891caf-4f14-41ab-a0d1-0b5908550243/ENCFF207ATZ.bigWig\ color 6,218,147\ longLabel Naive B cell male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR480SNC Signal\ track wgEncodeReg4Epigenetics_ENCFF207ATZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF272SWH ENCSR562POI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP11 THAP11 peaks 4 3400 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/71696442-bc45-464e-9c3b-93c9ef3757db/ENCFF272SWH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP11 THAP11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR562POI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF272SWH\ type bigBed 5\ useScore 1\ visibility squish\ HeartFetalPool1_CNhs10653_ctss_rev HeartFetalPl1- bigWig heart, fetal, pool1_CNhs10653_10046-101G1_reverse 0 3400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartFetalPool1_CNhs10653_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ HeartFetalPool1_CNhs10653_tpm_rev HeartFetalPl1- bigWig heart, fetal, pool1_CNhs10653_10046-101G1_reverse 1 3400 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%2c%20fetal%2c%20pool1.CNhs10653.10046-101G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart, fetal, pool1_CNhs10653_10046-101G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10046-101G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartFetalPool1_CNhs10653_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10046-101G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF239RJB ENCSR481YGZ Peak bigBed 5 Foreskin melanocyte male newborn H3K4me3 peak 4 3401 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/f347597d-e1c9-406c-a60c-2521e499a370/ENCFF239RJB.bigBed\ color 255,0,0\ longLabel Foreskin melanocyte male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR481YGZ Peak\ track wgEncodeReg4Epigenetics_ENCFF239RJB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF598GDB ENCSR562POI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP11 THAP11 ENCSR562POI signal 2 3401 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/bac236e7-5277-43f6-9937-e0c82dfe6336/ENCFF598GDB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens THAP11 THAP11 ENCSR562POI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR562POI Signal\ track wgEncodeReg4TfChip_ENCFF598GDB\ type bigWig\ visibility full\ HeartMitralValveAdult_CNhs12855_ctss_fwd HeartMitralValveAdult+ bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_forward 0 3401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartMitralValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartMitralValveAdult_CNhs12855_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_tpm_fwd HeartMitralValveAdult+ bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_forward 1 3401 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartMitralValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartMitralValveAdult_CNhs12855_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF168ZYA ENCSR481YGZ Signal bigWig Foreskin melanocyte male newborn H3K4me3 signal 2 3402 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/67a14c1c-cade-498e-9fb0-7236c9ce4240/ENCFF168ZYA.bigWig\ color 255,0,0\ longLabel Foreskin melanocyte male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR481YGZ Signal\ track wgEncodeReg4Epigenetics_ENCFF168ZYA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF343KII ENCSR563FBT Peak bigBed 5 A549 USF2 peaks 4 3402 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/ae4e8682-6553-4309-b126-199abac2fa3a/ENCFF343KII.bigBed\ labelFields none\ longLabel A549 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563FBT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF343KII\ type bigBed 5\ useScore 1\ visibility squish\ HeartMitralValveAdult_CNhs12855_ctss_rev HeartMitralValveAdult- bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_reverse 0 3402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartMitralValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartMitralValveAdult_CNhs12855_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ HeartMitralValveAdult_CNhs12855_tpm_rev HeartMitralValveAdult- bigWig heart - mitral valve, adult_CNhs12855_10205-103F7_reverse 1 3402 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20mitral%20valve%2c%20adult.CNhs12855.10205-103F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart - mitral valve, adult_CNhs12855_10205-103F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10205-103F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartMitralValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartMitralValveAdult_CNhs12855_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10205-103F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF600UDP ENCSR482HQE Peak bigBed 5 Lung tissue female embryo 108 days DNase peak 4 3403 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/d5629562-291c-46ec-a6a1-43d41b324f3e/ENCFF600UDP.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR482HQE Peak\ track wgEncodeReg4Epigenetics_ENCFF600UDP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF103BAK ENCSR563FBT Signal bigWig A549 USF2 ENCSR563FBT signal 2 3403 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/c8287042-eeef-44e2-a943-f70b21b39380/ENCFF103BAK.bigWig\ color 130,163,45\ longLabel A549 USF2 ENCSR563FBT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563FBT Signal\ track wgEncodeReg4TfChip_ENCFF103BAK\ type bigWig\ visibility full\ HeartPulmonicValveAdult_CNhs12856_ctss_fwd HeartPulmonicValveAdult+ bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward 0 3403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartPulmonicValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartPulmonicValveAdult_CNhs12856_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_tpm_fwd HeartPulmonicValveAdult+ bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward 1 3403 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartPulmonicValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartPulmonicValveAdult_CNhs12856_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF754JLV ENCSR482HQE Signal bigWig Lung tissue female embryo 108 days DNase signal 2 3404 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/3f60cefb-7202-43a6-93c3-d7e95dd90657/ENCFF754JLV.bigWig\ color 6,218,147\ longLabel Lung tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR482HQE Signal\ track wgEncodeReg4Epigenetics_ENCFF754JLV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF863RQR ENCSR563JME Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF256 ZNF256 peaks 4 3404 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/3ab4f109-fa21-4dc8-9c3b-25bd6b56052b/ENCFF863RQR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF256 ZNF256 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563JME Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF863RQR\ type bigBed 5\ useScore 1\ visibility squish\ HeartPulmonicValveAdult_CNhs12856_ctss_rev HeartPulmonicValveAdult- bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse 0 3404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartPulmonicValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartPulmonicValveAdult_CNhs12856_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ HeartPulmonicValveAdult_CNhs12856_tpm_rev HeartPulmonicValveAdult- bigWig heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse 1 3404 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20pulmonic%20valve%2c%20adult.CNhs12856.10206-103F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart - pulmonic valve, adult_CNhs12856_10206-103F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10206-103F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartPulmonicValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartPulmonicValveAdult_CNhs12856_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10206-103F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF077XIZ ENCSR482PMN Peak bigBed 5 Spleen tissue female adult 51 years CTCF peak 4 3405 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/6e4cd50e-119c-4669-8a02-24460206d048/ENCFF077XIZ.bigBed\ color 0,176,240\ labelFields none\ longLabel Spleen tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR482PMN Peak\ track wgEncodeReg4Epigenetics_ENCFF077XIZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF647OAY ENCSR563JME Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF256 ZNF256 ENCSR563JME signal 2 3405 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/71f343e0-d81c-4641-81b6-7da7da3e6c64/ENCFF647OAY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF256 ZNF256 ENCSR563JME signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563JME Signal\ track wgEncodeReg4TfChip_ENCFF647OAY\ type bigWig\ visibility full\ HeartTricuspidValveAdult_CNhs12857_ctss_fwd HeartTricuspidValveAdult+ bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward 0 3405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartTricuspidValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartTricuspidValveAdult_CNhs12857_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_tpm_fwd HeartTricuspidValveAdult+ bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward 1 3405 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartTricuspidValveAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HeartTricuspidValveAdult_CNhs12857_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF101RDN ENCSR482PMN Signal bigWig Spleen tissue female adult 51 years CTCF signal 2 3406 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/dd00fd7c-8dd2-4c76-b983-581dd8f20524/ENCFF101RDN.bigWig\ color 0,176,240\ longLabel Spleen tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR482PMN Signal\ track wgEncodeReg4Epigenetics_ENCFF101RDN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF163BSY ENCSR563LLO Peak bigBed 5 K562 E2F1 peaks 4 3406 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/af224573-dd1e-4496-9c37-602801196d52/ENCFF163BSY.bigBed\ labelFields none\ longLabel K562 E2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563LLO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF163BSY\ type bigBed 5\ useScore 1\ visibility squish\ HeartTricuspidValveAdult_CNhs12857_ctss_rev HeartTricuspidValveAdult- bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse 0 3406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HeartTricuspidValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartTricuspidValveAdult_CNhs12857_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ HeartTricuspidValveAdult_CNhs12857_tpm_rev HeartTricuspidValveAdult- bigWig heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse 1 3406 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/heart%20-%20tricuspid%20valve%2c%20adult.CNhs12857.10207-103F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel heart - tricuspid valve, adult_CNhs12857_10207-103F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10207-103F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HeartTricuspidValveAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HeartTricuspidValveAdult_CNhs12857_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10207-103F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF617ZHH ENCSR482TGI Peak bigBed 5 Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak 4 3407 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/1bbcfdaf-15f5-4714-8e43-1f95fa068c46/ENCFF617ZHH.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR482TGI Peak\ track wgEncodeReg4Epigenetics_ENCFF617ZHH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF387AXO ENCSR563LLO Signal bigWig K562 E2F1 ENCSR563LLO signal 2 3407 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/5b5c768b-6a76-41cd-8412-90bf796880af/ENCFF387AXO.bigWig\ color 254,75,173\ longLabel K562 E2F1 ENCSR563LLO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563LLO Signal\ track wgEncodeReg4TfChip_ENCFF387AXO\ type bigWig\ visibility full\ HippocampusAdultDonor10196_CNhs13795_ctss_fwd HippocampusAdultD10196+ bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward 0 3407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10196_CNhs13795_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_tpm_fwd HippocampusAdultD10196+ bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward 1 3407 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10196_CNhs13795_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF307HLE ENCSR482TGI Signal bigWig Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal 2 3408 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/aaebd1e0-be4b-4b44-b45c-98e330e7de5b/ENCFF307HLE.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR482TGI Signal\ track wgEncodeReg4Epigenetics_ENCFF307HLE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF594CVK ENCSR563SHQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP36L2 ZFP36L2 peaks 4 3408 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/bff2e507-21ef-4143-85be-630449295b09/ENCFF594CVK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP36L2 ZFP36L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563SHQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF594CVK\ type bigBed 5\ useScore 1\ visibility squish\ HippocampusAdultDonor10196_CNhs13795_ctss_rev HippocampusAdultD10196- bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse 0 3408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10196_CNhs13795_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10196_CNhs13795_tpm_rev HippocampusAdultD10196- bigWig hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse 1 3408 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%20-%20adult%2c%20donor10196.CNhs13795.10169-103B7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus - adult, donor10196_CNhs13795_10169-103B7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10169-103B7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10196_CNhs13795_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10169-103B7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF079OTX ENCSR483HUW Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 3409 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/4ec76c8e-400a-42bf-ac58-bc0aae8839c3/ENCFF079OTX.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR483HUW Peak\ track wgEncodeReg4Epigenetics_ENCFF079OTX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF915YDJ ENCSR563SHQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP36L2 ZFP36L2 ENCSR563SHQ signal 2 3409 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/ab49597b-82b8-406d-8d6d-a55a0173d96c/ENCFF915YDJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP36L2 ZFP36L2 ENCSR563SHQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563SHQ Signal\ track wgEncodeReg4TfChip_ENCFF915YDJ\ type bigWig\ visibility full\ HippocampusAdultDonor10252_CNhs12312_ctss_fwd HippocampusAdultD10252+ bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward 0 3409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10252_CNhs12312_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_tpm_fwd HippocampusAdultD10252+ bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward 1 3409 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10252_CNhs12312_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF016KGC ENCSR483HUW Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 3410 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/14/edb0acfd-c0f7-44c8-a1aa-e67e03eeb8eb/ENCFF016KGC.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR483HUW Signal\ track wgEncodeReg4Epigenetics_ENCFF016KGC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF195BET ENCSR563YDA Peak bigBed 5 K562 HDGF peaks 4 3410 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/a042d41a-9d99-4c44-9acc-d043d047db08/ENCFF195BET.bigBed\ labelFields none\ longLabel K562 HDGF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563YDA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF195BET\ type bigBed 5\ useScore 1\ visibility squish\ HippocampusAdultDonor10252_CNhs12312_ctss_rev HippocampusAdultD10252- bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse 0 3410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10252_CNhs12312_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10252_CNhs12312_tpm_rev HippocampusAdultD10252- bigWig hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse 1 3410 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10252.CNhs12312.10153-102I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10252_CNhs12312_10153-102I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10153-102I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10252_CNhs12312_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10153-102I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF006OFA ENCSR483RKN Peak bigBed 5 K562 ATAC peak 4 3411 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/7715173c-4401-4037-8d49-eec0b68eddbc/ENCFF006OFA.bigBed\ color 2,199,185\ longLabel K562 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR483RKN Peak\ track wgEncodeReg4Epigenetics_ENCFF006OFA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF305IEL ENCSR563YDA Signal bigWig K562 HDGF ENCSR563YDA signal 2 3411 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/abbf11ba-aeb9-4e15-84a4-af721b94c430/ENCFF305IEL.bigWig\ color 254,75,173\ longLabel K562 HDGF ENCSR563YDA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR563YDA Signal\ track wgEncodeReg4TfChip_ENCFF305IEL\ type bigWig\ visibility full\ HippocampusAdultDonor10258_CNhs14227_ctss_fwd HippocampusAdultD10258+ bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward 0 3411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10258_CNhs14227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_tpm_fwd HippocampusAdultD10258+ bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward 1 3411 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusAdultDonor10258_CNhs14227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF754EAC ENCSR483RKN Signal bigWig K562 ATAC signal 2 3412 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/b1a5f637-dba2-4272-b09e-86316d037135/ENCFF754EAC.bigWig\ color 2,199,185\ longLabel K562 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR483RKN Signal\ track wgEncodeReg4Epigenetics_ENCFF754EAC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF799MOR ENCSR564YYW Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF157 ZNF157 peaks 4 3412 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/5aac083e-b67f-4fd5-839c-fcefde1fed66/ENCFF799MOR.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF157 ZNF157 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR564YYW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF799MOR\ type bigBed 5\ useScore 1\ visibility squish\ HippocampusAdultDonor10258_CNhs14227_ctss_rev HippocampusAdultD10258- bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse 0 3412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10258_CNhs14227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ HippocampusAdultDonor10258_CNhs14227_tpm_rev HippocampusAdultD10258- bigWig hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse 1 3412 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20adult%2c%20donor10258.CNhs14227.10374-105G5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, adult, donor10258_CNhs14227_10374-105G5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10374-105G5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusAdultDonor10258_CNhs14227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10374-105G5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF881RGF ENCSR484DDO Peak bigBed 5 Body of pancreas tissue female adult 53 years CTCF peak 4 3413 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/edc8a545-eedc-4667-bfe2-80bdba8cfa23/ENCFF881RGF.bigBed\ color 0,176,240\ labelFields none\ longLabel Body of pancreas tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR484DDO Peak\ track wgEncodeReg4Epigenetics_ENCFF881RGF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF200VXS ENCSR564YYW Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF157 ZNF157 ENCSR564YYW signal 2 3413 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/163dcb8d-ae86-4243-ac31-b36f9d45d130/ENCFF200VXS.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF157 ZNF157 ENCSR564YYW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR564YYW Signal\ track wgEncodeReg4TfChip_ENCFF200VXS\ type bigWig\ visibility full\ HippocampusNewbornDonor10223_CNhs14081_ctss_fwd HippocampusNbD10223+ bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward 0 3413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusNewbornDonor10223_CNhs14081_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_tpm_fwd HippocampusNbD10223+ bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward 1 3413 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track HippocampusNewbornDonor10223_CNhs14081_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF049EBZ ENCSR484DDO Signal bigWig Body of pancreas tissue female adult 53 years CTCF signal 2 3414 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/b55c811b-ee81-411c-b1df-c478183cd225/ENCFF049EBZ.bigWig\ color 0,176,240\ longLabel Body of pancreas tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR484DDO Signal\ track wgEncodeReg4Epigenetics_ENCFF049EBZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF107KRZ ENCSR565BVI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFAT5 NFAT5 peaks 4 3414 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/444ecf60-6da3-4e32-abc8-84fec47ad825/ENCFF107KRZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFAT5 NFAT5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR565BVI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF107KRZ\ type bigBed 5\ useScore 1\ visibility squish\ HippocampusNewbornDonor10223_CNhs14081_ctss_rev HippocampusNbD10223- bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse 0 3414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel HippocampusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusNewbornDonor10223_CNhs14081_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ HippocampusNewbornDonor10223_CNhs14081_tpm_rev HippocampusNbD10223- bigWig hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse 1 3414 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/hippocampus%2c%20newborn%2c%20donor10223.CNhs14081.10363-105F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel hippocampus, newborn, donor10223_CNhs14081_10363-105F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10363-105F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel HippocampusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track HippocampusNewbornDonor10223_CNhs14081_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10363-105F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF584VJP ENCSR484UAU Peak bigBed 5 Tibial nerve tissue male adult 37 years DNase peak 4 3415 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/6c4ac797-795c-4ed9-b858-6ce6790e463c/ENCFF584VJP.bigBed\ color 6,218,147\ labelFields none\ longLabel Tibial nerve tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR484UAU Peak\ track wgEncodeReg4Epigenetics_ENCFF584VJP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF938UWC ENCSR565BVI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFAT5 NFAT5 ENCSR565BVI signal 2 3415 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/4425692b-34da-43f6-adc2-0c0d3498c8cf/ENCFF938UWC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFAT5 NFAT5 ENCSR565BVI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR565BVI Signal\ track wgEncodeReg4TfChip_ENCFF938UWC\ type bigWig\ visibility full\ InsulaAdultPool1_CNhs10646_ctss_fwd InsulaAdultPl1+ bigWig insula, adult, pool1_CNhs10646_10039-101F3_forward 0 3415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel InsulaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track InsulaAdultPool1_CNhs10646_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_tpm_fwd InsulaAdultPl1+ bigWig insula, adult, pool1_CNhs10646_10039-101F3_forward 1 3415 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel InsulaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track InsulaAdultPool1_CNhs10646_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF644VHX ENCSR484UAU Signal bigWig Tibial nerve tissue male adult 37 years DNase signal 2 3416 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/b5f8dafd-642c-4662-978b-8e5eb0913442/ENCFF644VHX.bigWig\ color 6,218,147\ longLabel Tibial nerve tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR484UAU Signal\ track wgEncodeReg4Epigenetics_ENCFF644VHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF663LEI ENCSR565HBN Peak bigBed 5 Heart left ventricle tissue female adult (46 years) CTCF peaks 4 3416 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/08718600-b23c-4dac-9bc6-4619903bc079/ENCFF663LEI.bigBed\ labelFields none\ longLabel Heart left ventricle tissue female adult (46 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR565HBN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF663LEI\ type bigBed 5\ useScore 1\ visibility squish\ InsulaAdultPool1_CNhs10646_ctss_rev InsulaAdultPl1- bigWig insula, adult, pool1_CNhs10646_10039-101F3_reverse 0 3416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel InsulaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track InsulaAdultPool1_CNhs10646_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ InsulaAdultPool1_CNhs10646_tpm_rev InsulaAdultPl1- bigWig insula, adult, pool1_CNhs10646_10039-101F3_reverse 1 3416 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/insula%2c%20adult%2c%20pool1.CNhs10646.10039-101F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel insula, adult, pool1_CNhs10646_10039-101F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10039-101F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel InsulaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track InsulaAdultPool1_CNhs10646_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10039-101F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF854SOO ENCSR485TLP Peak bigBed 5 GM23338 ATAC peak 4 3417 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/f0c9dc0d-b9f7-4de1-a7d0-28296b96b42b/ENCFF854SOO.bigBed\ color 2,199,185\ longLabel GM23338 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR485TLP Peak\ track wgEncodeReg4Epigenetics_ENCFF854SOO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF252IVK ENCSR565HBN Signal bigWig Heart left ventricle tissue female adult (46 years) CTCF ENCSR565HBN signal 2 3417 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/c07996df-60d9-41ca-a715-589e03950be5/ENCFF252IVK.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (46 years) CTCF ENCSR565HBN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR565HBN Signal\ track wgEncodeReg4TfChip_ENCFF252IVK\ type bigWig\ visibility full\ KidneyAdultPool1_CNhs10622_ctss_fwd KidneyAdultPl1+ bigWig kidney, adult, pool1_CNhs10622_10017-101C8_forward 0 3417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyAdultPool1_CNhs10622_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_tpm_fwd KidneyAdultPl1+ bigWig kidney, adult, pool1_CNhs10622_10017-101C8_forward 1 3417 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyAdultPool1_CNhs10622_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF378ZGI ENCSR485TLP Signal bigWig GM23338 ATAC signal 2 3418 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/e5a3c517-a03b-4bdc-b85c-e01b8a50769a/ENCFF378ZGI.bigWig\ color 2,199,185\ longLabel GM23338 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR485TLP Signal\ track wgEncodeReg4Epigenetics_ENCFF378ZGI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF099NVR ENCSR567NTZ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF15 TCF15 peaks 4 3418 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/22/e797493d-51f0-475c-ab93-0575080fe87d/ENCFF099NVR.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF15 TCF15 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR567NTZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF099NVR\ type bigBed 5\ useScore 1\ visibility squish\ KidneyAdultPool1_CNhs10622_ctss_rev KidneyAdultPl1- bigWig kidney, adult, pool1_CNhs10622_10017-101C8_reverse 0 3418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyAdultPool1_CNhs10622_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ KidneyAdultPool1_CNhs10622_tpm_rev KidneyAdultPl1- bigWig kidney, adult, pool1_CNhs10622_10017-101C8_reverse 1 3418 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20adult%2c%20pool1.CNhs10622.10017-101C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel kidney, adult, pool1_CNhs10622_10017-101C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10017-101C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyAdultPool1_CNhs10622_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10017-101C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF862QVS ENCSR485UQY Peak bigBed 5 Right cardiac atrium tissue male adult 60 years DNase peak 4 3419 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/a5b6b84b-6953-483e-8637-0df2c497661f/ENCFF862QVS.bigBed\ color 6,218,147\ labelFields none\ longLabel Right cardiac atrium tissue male adult 60 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR485UQY Peak\ track wgEncodeReg4Epigenetics_ENCFF862QVS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF903WGD ENCSR567NTZ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF15 TCF15 ENCSR567NTZ signal 2 3419 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/22/1438ad5b-4aab-4139-84ca-4c84f122f0fb/ENCFF903WGD.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF15 TCF15 ENCSR567NTZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR567NTZ Signal\ track wgEncodeReg4TfChip_ENCFF903WGD\ type bigWig\ visibility full\ KidneyFetalPool1_CNhs10652_ctss_fwd KidneyFetalPl1+ bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_forward 0 3419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyFetalPool1_CNhs10652_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_tpm_fwd KidneyFetalPl1+ bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_forward 1 3419 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track KidneyFetalPool1_CNhs10652_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF963TDP ENCSR485UQY Signal bigWig Right cardiac atrium tissue male adult 60 years DNase signal 2 3420 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b1c936f7-5293-46fc-a1d7-17a57841b2c1/ENCFF963TDP.bigWig\ color 6,218,147\ longLabel Right cardiac atrium tissue male adult 60 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR485UQY Signal\ track wgEncodeReg4Epigenetics_ENCFF963TDP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF742AQK ENCSR568IVD Peak bigBed 5 Peyer's patch tissue male adult (54 years) CTCF peaks 4 3420 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/a829a981-1e36-4faa-a7f8-da58f900e460/ENCFF742AQK.bigBed\ labelFields none\ longLabel Peyer's patch tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR568IVD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF742AQK\ type bigBed 5\ useScore 1\ visibility squish\ KidneyFetalPool1_CNhs10652_ctss_rev KidneyFetalPl1- bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_reverse 0 3420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel KidneyFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyFetalPool1_CNhs10652_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ KidneyFetalPool1_CNhs10652_tpm_rev KidneyFetalPl1- bigWig kidney, fetal, pool1_CNhs10652_10045-101F9_reverse 1 3420 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/kidney%2c%20fetal%2c%20pool1.CNhs10652.10045-101F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel kidney, fetal, pool1_CNhs10652_10045-101F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10045-101F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel KidneyFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track KidneyFetalPool1_CNhs10652_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10045-101F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF266CTJ ENCSR485VQV Peak bigBed 5 Suprapubic skin tissue male adult 37 years CTCF peak 4 3421 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/e225c02b-7233-412e-aa60-6c47c5fdf4bb/ENCFF266CTJ.bigBed\ color 0,176,240\ labelFields none\ longLabel Suprapubic skin tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR485VQV Peak\ track wgEncodeReg4Epigenetics_ENCFF266CTJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF788NGV ENCSR568IVD Signal bigWig Peyer's patch tissue male adult (54 years) CTCF ENCSR568IVD signal 2 3421 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/78fa84df-c810-4f03-9f02-7d4fffccee22/ENCFF788NGV.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (54 years) CTCF ENCSR568IVD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR568IVD Signal\ track wgEncodeReg4TfChip_ENCFF788NGV\ type bigWig\ visibility full\ LeftAtriumAdultDonor1_CNhs11790_ctss_fwd LeftAtriumAdultD1+ bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_forward 0 3421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftAtriumAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftAtriumAdultDonor1_CNhs11790_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_tpm_fwd LeftAtriumAdultD1+ bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_forward 1 3421 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftAtriumAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftAtriumAdultDonor1_CNhs11790_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF015NMW ENCSR485VQV Signal bigWig Suprapubic skin tissue male adult 37 years CTCF signal 2 3422 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/3fe2f05f-199e-477d-bb05-f90cd0f13bec/ENCFF015NMW.bigWig\ color 0,176,240\ longLabel Suprapubic skin tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR485VQV Signal\ track wgEncodeReg4Epigenetics_ENCFF015NMW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF386RRT ENCSR568PGX Peak bigBed 5 K562 HDAC1 peaks 4 3422 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/a37fde0c-2809-4a04-97b2-90256247bf87/ENCFF386RRT.bigBed\ labelFields none\ longLabel K562 HDAC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR568PGX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF386RRT\ type bigBed 5\ useScore 1\ visibility squish\ LeftAtriumAdultDonor1_CNhs11790_ctss_rev LeftAtriumAdultD1- bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_reverse 0 3422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftAtriumAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftAtriumAdultDonor1_CNhs11790_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ LeftAtriumAdultDonor1_CNhs11790_tpm_rev LeftAtriumAdultD1- bigWig left atrium, adult, donor1_CNhs11790_10079-102A7_reverse 1 3422 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20atrium%2c%20adult%2c%20donor1.CNhs11790.10079-102A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel left atrium, adult, donor1_CNhs11790_10079-102A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10079-102A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftAtriumAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftAtriumAdultDonor1_CNhs11790_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10079-102A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF995GQJ ENCSR486FMF Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase peak 4 3423 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/57afa338-04ef-4fec-9302-08e7f288a5af/ENCFF995GQJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486FMF Peak\ track wgEncodeReg4Epigenetics_ENCFF995GQJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF836FYP ENCSR569ARC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYC NFYC peaks 4 3423 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6c3b46e7-3c6d-4028-8b72-b68c9e9c813c/ENCFF836FYP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYC NFYC peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR569ARC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF836FYP\ type bigBed 5\ useScore 1\ visibility squish\ LeftVentricleAdultDonor1_CNhs11789_ctss_fwd LeftVentricleAdultD1+ bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_forward 0 3423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftVentricleAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftVentricleAdultDonor1_CNhs11789_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_tpm_fwd LeftVentricleAdultD1+ bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_forward 1 3423 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftVentricleAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LeftVentricleAdultDonor1_CNhs11789_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF811SHY ENCSR486FMF Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase signal 2 3424 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c181f575-b895-4e41-b53b-418f06c177e8/ENCFF811SHY.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486FMF Signal\ track wgEncodeReg4Epigenetics_ENCFF811SHY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF998FBW ENCSR569ARC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYC NFYC ENCSR569ARC signal 2 3424 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d60d3764-7439-43f7-9675-ad090bffceed/ENCFF998FBW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYC NFYC ENCSR569ARC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR569ARC Signal\ track wgEncodeReg4TfChip_ENCFF998FBW\ type bigWig\ visibility full\ LeftVentricleAdultDonor1_CNhs11789_ctss_rev LeftVentricleAdultD1- bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse 0 3424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LeftVentricleAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftVentricleAdultDonor1_CNhs11789_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ LeftVentricleAdultDonor1_CNhs11789_tpm_rev LeftVentricleAdultD1- bigWig left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse 1 3424 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/left%20ventricle%2c%20adult%2c%20donor1.CNhs11789.10078-102A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel left ventricle, adult, donor1_CNhs11789_10078-102A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10078-102A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LeftVentricleAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LeftVentricleAdultDonor1_CNhs11789_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10078-102A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF923GWZ ENCSR486KKY Peak bigBed 5 T follicular helper cell female adult 25 years DNase peak 4 3425 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/a31ca0a5-8c68-411a-aec9-b713e8344a3f/ENCFF923GWZ.bigBed\ color 6,218,147\ labelFields none\ longLabel T follicular helper cell female adult 25 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486KKY Peak\ track wgEncodeReg4Epigenetics_ENCFF923GWZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF952OPK ENCSR569SZK Peak bigBed 5 Tibial nerve tissue female adult (51 years) EP300 peaks 4 3425 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/27f30712-36b8-47eb-98b9-5666ef183982/ENCFF952OPK.bigBed\ labelFields none\ longLabel Tibial nerve tissue female adult (51 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR569SZK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF952OPK\ type bigBed 5\ useScore 1\ visibility squish\ LiverAdultPool1_CNhs10624_ctss_fwd LiverAdultPl1+ bigWig liver, adult, pool1_CNhs10624_10018-101C9_forward 0 3425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverAdultPool1_CNhs10624_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_tpm_fwd LiverAdultPl1+ bigWig liver, adult, pool1_CNhs10624_10018-101C9_forward 1 3425 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverAdultPool1_CNhs10624_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF749YXO ENCSR486KKY Signal bigWig T follicular helper cell female adult 25 years DNase signal 2 3426 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/d434245b-1af6-40c5-bf21-040e0764a08d/ENCFF749YXO.bigWig\ color 6,218,147\ longLabel T follicular helper cell female adult 25 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486KKY Signal\ track wgEncodeReg4Epigenetics_ENCFF749YXO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF858HYQ ENCSR569SZK Signal bigWig Tibial nerve tissue female adult (51 years) EP300 ENCSR569SZK signal 2 3426 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a684cf7b-c73e-4183-ac0a-d805636d87ae/ENCFF858HYQ.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (51 years) EP300 ENCSR569SZK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR569SZK Signal\ track wgEncodeReg4TfChip_ENCFF858HYQ\ type bigWig\ visibility full\ LiverAdultPool1_CNhs10624_ctss_rev LiverAdultPl1- bigWig liver, adult, pool1_CNhs10624_10018-101C9_reverse 0 3426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverAdultPool1_CNhs10624_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ LiverAdultPool1_CNhs10624_tpm_rev LiverAdultPl1- bigWig liver, adult, pool1_CNhs10624_10018-101C9_reverse 1 3426 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20adult%2c%20pool1.CNhs10624.10018-101C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel liver, adult, pool1_CNhs10624_10018-101C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10018-101C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverAdultPool1_CNhs10624_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10018-101C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF562KHN ENCSR486QMV Peak bigBed 5 Caudate nucleus tissue female adult 75 years H3K4me3 peak 4 3427 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/85910b7c-7f55-4c1c-88b3-afff2eddd4a9/ENCFF562KHN.bigBed\ color 255,0,0\ longLabel Caudate nucleus tissue female adult 75 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486QMV Peak\ track wgEncodeReg4Epigenetics_ENCFF562KHN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF282FWZ ENCSR569XNP Peak bigBed 5 MCF-7 FOS peaks 4 3427 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/c1073adc-f4e1-4a6e-9338-260e40d6785b/ENCFF282FWZ.bigBed\ labelFields none\ longLabel MCF-7 FOS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR569XNP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF282FWZ\ type bigBed 5\ useScore 1\ visibility squish\ LiverFetalPool1_CNhs11798_ctss_fwd LiverFetalPl1+ bigWig liver, fetal, pool1_CNhs11798_10086-102B5_forward 0 3427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverFetalPool1_CNhs11798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_tpm_fwd LiverFetalPl1+ bigWig liver, fetal, pool1_CNhs11798_10086-102B5_forward 1 3427 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LiverFetalPool1_CNhs11798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF506IHN ENCSR486QMV Signal bigWig Caudate nucleus tissue female adult 75 years H3K4me3 signal 2 3428 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/82907bf4-8bf8-4c23-b19c-158b90b13bbb/ENCFF506IHN.bigWig\ color 255,0,0\ longLabel Caudate nucleus tissue female adult 75 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486QMV Signal\ track wgEncodeReg4Epigenetics_ENCFF506IHN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF185NFN ENCSR569XNP Signal bigWig MCF-7 FOS ENCSR569XNP signal 2 3428 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/e262e1f3-03b7-446a-baf4-319d43bcfdb6/ENCFF185NFN.bigWig\ color 65,171,173\ longLabel MCF-7 FOS ENCSR569XNP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR569XNP Signal\ track wgEncodeReg4TfChip_ENCFF185NFN\ type bigWig\ visibility full\ LiverFetalPool1_CNhs11798_ctss_rev LiverFetalPl1- bigWig liver, fetal, pool1_CNhs11798_10086-102B5_reverse 0 3428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LiverFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverFetalPool1_CNhs11798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ LiverFetalPool1_CNhs11798_tpm_rev LiverFetalPl1- bigWig liver, fetal, pool1_CNhs11798_10086-102B5_reverse 1 3428 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/liver%2c%20fetal%2c%20pool1.CNhs11798.10086-102B5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel liver, fetal, pool1_CNhs11798_10086-102B5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10086-102B5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LiverFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LiverFetalPool1_CNhs11798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10086-102B5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF462OBC ENCSR486XJK Peak bigBed 5 Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 3429 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/0ee880e6-0f65-4125-85a2-876099c7310a/ENCFF462OBC.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486XJK Peak\ track wgEncodeReg4Epigenetics_ENCFF462OBC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF198TWI ENCSR571BUF Peak bigBed 5 K562 ARHGAP35 peaks 4 3429 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3869e66e-e5e6-43bd-af44-642a93a29da4/ENCFF198TWI.bigBed\ labelFields none\ longLabel K562 ARHGAP35 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR571BUF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF198TWI\ type bigBed 5\ useScore 1\ visibility squish\ LocusCoeruleusAdultDonor10196_CNhs13808_ctss_fwd LocusCoeruleusAdultD10196+ bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward 0 3429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10196_CNhs13808_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_tpm_fwd LocusCoeruleusAdultD10196+ bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward 1 3429 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10196_CNhs13808_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF131HJZ ENCSR486XJK Signal bigWig Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 3430 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/9cff6f0d-7c70-44b2-9ecb-ed6a3370ae1d/ENCFF131HJZ.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR486XJK Signal\ track wgEncodeReg4Epigenetics_ENCFF131HJZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF452FAK ENCSR571BUF Signal bigWig K562 ARHGAP35 ENCSR571BUF signal 2 3430 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/10e1b456-19dd-404f-b66e-7fe23e8fc40f/ENCFF452FAK.bigWig\ color 254,75,173\ longLabel K562 ARHGAP35 ENCSR571BUF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR571BUF Signal\ track wgEncodeReg4TfChip_ENCFF452FAK\ type bigWig\ visibility full\ LocusCoeruleusAdultDonor10196_CNhs13808_ctss_rev LocusCoeruleusAdultD10196- bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse 0 3430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10196_CNhs13808_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10196_CNhs13808_tpm_rev LocusCoeruleusAdultD10196- bigWig locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse 1 3430 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%20-%20adult%2c%20donor10196.CNhs13808.10182-103D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus - adult, donor10196_CNhs13808_10182-103D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10182-103D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10196_CNhs13808_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10182-103D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF629KFL ENCSR487BEW Peak bigBed 5 Heart left ventricle tissue male adult 34 years H3K4me3 peak 4 3431 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ab4de188-1435-4737-8709-cb6e07d67dab/ENCFF629KFL.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487BEW Peak\ track wgEncodeReg4Epigenetics_ENCFF629KFL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF540BLL ENCSR571PDN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SSRP1 SSRP1 peaks 4 3431 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5f1e3782-9d55-4e8c-8504-cf1bdfa4a0d7/ENCFF540BLL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SSRP1 SSRP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR571PDN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF540BLL\ type bigBed 5\ useScore 1\ visibility squish\ LocusCoeruleusAdultDonor10252_CNhs12322_ctss_fwd LocusCoeruleusAdultD10252+ bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward 0 3431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10252_CNhs12322_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_tpm_fwd LocusCoeruleusAdultD10252+ bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward 1 3431 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10252_CNhs12322_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF817RTJ ENCSR487BEW Signal bigWig Heart left ventricle tissue male adult 34 years H3K4me3 signal 2 3432 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/fe113bde-e567-4b46-bec0-27ed22f856fa/ENCFF817RTJ.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487BEW Signal\ track wgEncodeReg4Epigenetics_ENCFF817RTJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF517CGF ENCSR571PDN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SSRP1 SSRP1 ENCSR571PDN signal 2 3432 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/313c269b-f91f-4fb9-b383-157211e2f899/ENCFF517CGF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SSRP1 SSRP1 ENCSR571PDN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR571PDN Signal\ track wgEncodeReg4TfChip_ENCFF517CGF\ type bigWig\ visibility full\ LocusCoeruleusAdultDonor10252_CNhs12322_ctss_rev LocusCoeruleusAdultD10252- bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse 0 3432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10252_CNhs12322_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10252_CNhs12322_tpm_rev LocusCoeruleusAdultD10252- bigWig locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse 1 3432 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10252.CNhs12322.10165-103B3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10252_CNhs12322_10165-103B3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10165-103B3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10252_CNhs12322_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10165-103B3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF606DIW ENCSR487INP Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 3433 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/a56098a3-12de-4e3c-8ee7-4ed84852c76d/ENCFF606DIW.bigBed\ color 255,0,0\ longLabel Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487INP Peak\ track wgEncodeReg4Epigenetics_ENCFF606DIW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF756FGB ENCSR572DUJ Peak bigBed 5 Body of pancreas tissue male adult (37 years) CTCF peaks 4 3433 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/35e4b228-75a3-4139-85b9-e4bc5ea129d3/ENCFF756FGB.bigBed\ labelFields none\ longLabel Body of pancreas tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR572DUJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF756FGB\ type bigBed 5\ useScore 1\ visibility squish\ LocusCoeruleusAdultDonor10258_CNhs14550_ctss_fwd LocusCoeruleusAdultD10258+ bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward 0 3433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10258_CNhs14550_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_tpm_fwd LocusCoeruleusAdultD10258+ bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward 1 3433 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusAdultDonor10258_CNhs14550_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF721IBM ENCSR487INP Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 3434 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/90f5e00b-4513-42b7-b524-6ca199adcd07/ENCFF721IBM.bigWig\ color 255,0,0\ longLabel Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487INP Signal\ track wgEncodeReg4Epigenetics_ENCFF721IBM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF885ZLN ENCSR572DUJ Signal bigWig Body of pancreas tissue male adult (37 years) CTCF ENCSR572DUJ signal 2 3434 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/528e8dc8-6313-4996-bc37-c66626e8cb51/ENCFF885ZLN.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue male adult (37 years) CTCF ENCSR572DUJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR572DUJ Signal\ track wgEncodeReg4TfChip_ENCFF885ZLN\ type bigWig\ visibility full\ LocusCoeruleusAdultDonor10258_CNhs14550_ctss_rev LocusCoeruleusAdultD10258- bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse 0 3434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10258_CNhs14550_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ LocusCoeruleusAdultDonor10258_CNhs14550_tpm_rev LocusCoeruleusAdultD10258- bigWig locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse 1 3434 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20adult%2c%20donor10258.CNhs14550.10375-105G6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, adult, donor10258_CNhs14550_10375-105G6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10375-105G6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusAdultDonor10258_CNhs14550_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10375-105G6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF989SGA ENCSR487QSB Peak bigBed 5 GM18907 ATAC peak 4 3435 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/9cc12a08-6590-4b24-91cf-8cc7a829203a/ENCFF989SGA.bigBed\ color 2,199,185\ longLabel GM18907 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487QSB Peak\ track wgEncodeReg4Epigenetics_ENCFF989SGA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF858EKD ENCSR573OJP Peak bigBed 5 MCF-7 NCOA3 peaks 4 3435 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/223de86f-a086-4e36-8dc2-5f2e172d5097/ENCFF858EKD.bigBed\ labelFields none\ longLabel MCF-7 NCOA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR573OJP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF858EKD\ type bigBed 5\ useScore 1\ visibility squish\ LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_fwd LocusCoeruleusNbD10223+ bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward 0 3435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_fwd LocusCoeruleusNbD10223+ bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward 1 3435 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF570XGF ENCSR487QSB Signal bigWig GM18907 ATAC signal 2 3436 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/0da1c1a1-65cc-44ce-9308-a79f6bd837d8/ENCFF570XGF.bigWig\ color 2,199,185\ longLabel GM18907 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487QSB Signal\ track wgEncodeReg4Epigenetics_ENCFF570XGF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF745QIM ENCSR573OJP Signal bigWig MCF-7 NCOA3 ENCSR573OJP signal 2 3436 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/08377589-1433-4a43-b084-b308ca91ef72/ENCFF745QIM.bigWig\ color 65,171,173\ longLabel MCF-7 NCOA3 ENCSR573OJP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR573OJP Signal\ track wgEncodeReg4TfChip_ENCFF745QIM\ type bigWig\ visibility full\ LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_rev LocusCoeruleusNbD10223- bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse 0 3436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LocusCoeruleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusNewbornDonor10223_CNhs14080_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_rev LocusCoeruleusNbD10223- bigWig locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse 1 3436 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/locus%20coeruleus%2c%20newborn%2c%20donor10223.CNhs14080.10362-105F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel locus coeruleus, newborn, donor10223_CNhs14080_10362-105F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10362-105F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LocusCoeruleusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LocusCoeruleusNewbornDonor10223_CNhs14080_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10362-105F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF902NPJ ENCSR487SOP Peak bigBed 5 HG03064 ATAC peak 4 3437 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/55d6cf9f-817c-44b4-87b3-adde8c5e9b3c/ENCFF902NPJ.bigBed\ color 2,199,185\ longLabel HG03064 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487SOP Peak\ track wgEncodeReg4Epigenetics_ENCFF902NPJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF360UPH ENCSR574UJE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485 ZNF485 peaks 4 3437 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7efaafbb-ab1d-4c9d-954e-326a6d037131/ENCFF360UPH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485 ZNF485 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574UJE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF360UPH\ type bigBed 5\ useScore 1\ visibility squish\ LungAdultPool1_CNhs10625_ctss_fwd LungAdultPl1+ bigWig lung, adult, pool1_CNhs10625_10019-101D1_forward 0 3437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungAdultPool1_CNhs10625_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_tpm_fwd LungAdultPl1+ bigWig lung, adult, pool1_CNhs10625_10019-101D1_forward 1 3437 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungAdultPool1_CNhs10625_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF321AMD ENCSR487SOP Signal bigWig HG03064 ATAC signal 2 3438 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/9dc4f8be-8370-4310-8403-39db837af5dd/ENCFF321AMD.bigWig\ color 2,199,185\ longLabel HG03064 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR487SOP Signal\ track wgEncodeReg4Epigenetics_ENCFF321AMD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF048FCA ENCSR574UJE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485 ZNF485 ENCSR574UJE signal 2 3438 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/091a4891-9a13-4400-b163-6ee3f072a626/ENCFF048FCA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF485 ZNF485 ENCSR574UJE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574UJE Signal\ track wgEncodeReg4TfChip_ENCFF048FCA\ type bigWig\ visibility full\ LungAdultPool1_CNhs10625_ctss_rev LungAdultPl1- bigWig lung, adult, pool1_CNhs10625_10019-101D1_reverse 0 3438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungAdultPool1_CNhs10625_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ LungAdultPool1_CNhs10625_tpm_rev LungAdultPl1- bigWig lung, adult, pool1_CNhs10625_10019-101D1_reverse 1 3438 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20adult%2c%20pool1.CNhs10625.10019-101D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung, adult, pool1_CNhs10625_10019-101D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10019-101D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungAdultPool1_CNhs10625_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10019-101D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF543AIO ENCSR488FJP Peak bigBed 5 Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac peak 4 3439 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/28a06b05-6171-42c8-9349-78daf406af2b/ENCFF543AIO.bigBed\ color 181,145,0\ longLabel Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR488FJP Peak\ track wgEncodeReg4Epigenetics_ENCFF543AIO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF382SJS ENCSR574VJG Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFIX NFIX peaks 4 3439 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/092769c7-d933-4ba0-886b-ca52286564dd/ENCFF382SJS.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFIX NFIX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574VJG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF382SJS\ type bigBed 5\ useScore 1\ visibility squish\ LungFetalDonor1_CNhs11680_ctss_fwd LungFetalD1+ bigWig lung, fetal, donor1_CNhs11680_10068-101I5_forward 0 3439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungFetalDonor1_CNhs11680_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_tpm_fwd LungFetalD1+ bigWig lung, fetal, donor1_CNhs11680_10068-101I5_forward 1 3439 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungFetalDonor1_CNhs11680_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF200AOX ENCSR488FJP Signal bigWig Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac signal 2 3440 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/d80c1e00-de19-4411-8b9c-b3fa0a58ec86/ENCFF200AOX.bigWig\ color 181,145,0\ longLabel Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR488FJP Signal\ track wgEncodeReg4Epigenetics_ENCFF200AOX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF431LIE ENCSR574VJG Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFIX NFIX ENCSR574VJG signal 2 3440 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/2d485069-69b5-4f87-a8cf-c679c4026154/ENCFF431LIE.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFIX NFIX ENCSR574VJG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574VJG Signal\ track wgEncodeReg4TfChip_ENCFF431LIE\ type bigWig\ visibility full\ LungFetalDonor1_CNhs11680_ctss_rev LungFetalD1- bigWig lung, fetal, donor1_CNhs11680_10068-101I5_reverse 0 3440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungFetalDonor1_CNhs11680_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ LungFetalDonor1_CNhs11680_tpm_rev LungFetalD1- bigWig lung, fetal, donor1_CNhs11680_10068-101I5_reverse 1 3440 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20fetal%2c%20donor1.CNhs11680.10068-101I5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung, fetal, donor1_CNhs11680_10068-101I5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10068-101I5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungFetalDonor1_CNhs11680_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10068-101I5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF947HUR ENCSR488PHT Peak bigBed 5 Left lung tissue male embryo 113 days DNase peak 4 3441 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/a6a5aeba-a4f9-4320-9f4f-5ad6d29f3610/ENCFF947HUR.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue male embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR488PHT Peak\ track wgEncodeReg4Epigenetics_ENCFF947HUR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF119BQA ENCSR574XEO Peak bigBed 5 K562 NUFIP1 peaks 4 3441 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d086f84f-ac45-4218-8fbb-1c44183cda4a/ENCFF119BQA.bigBed\ labelFields none\ longLabel K562 NUFIP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574XEO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF119BQA\ type bigBed 5\ useScore 1\ visibility squish\ LungRightLowerLobeAdultDonor1_CNhs11786_ctss_fwd LungRightLowerLobeAdultD1+ bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward 0 3441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungRightLowerLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungRightLowerLobeAdultDonor1_CNhs11786_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_tpm_fwd LungRightLowerLobeAdultD1+ bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward 1 3441 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungRightLowerLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LungRightLowerLobeAdultDonor1_CNhs11786_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF636WJT ENCSR488PHT Signal bigWig Left lung tissue male embryo 113 days DNase signal 2 3442 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/974b661f-7d80-48d3-874c-18d6fb0bed84/ENCFF636WJT.bigWig\ color 6,218,147\ longLabel Left lung tissue male embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR488PHT Signal\ track wgEncodeReg4Epigenetics_ENCFF636WJT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF419SPJ ENCSR574XEO Signal bigWig K562 NUFIP1 ENCSR574XEO signal 2 3442 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5595b1ed-a4ee-4518-9faf-11c395d47edb/ENCFF419SPJ.bigWig\ color 254,75,173\ longLabel K562 NUFIP1 ENCSR574XEO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574XEO Signal\ track wgEncodeReg4TfChip_ENCFF419SPJ\ type bigWig\ visibility full\ LungRightLowerLobeAdultDonor1_CNhs11786_ctss_rev LungRightLowerLobeAdultD1- bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse 0 3442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LungRightLowerLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungRightLowerLobeAdultDonor1_CNhs11786_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ LungRightLowerLobeAdultDonor1_CNhs11786_tpm_rev LungRightLowerLobeAdultD1- bigWig lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse 1 3442 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lung%2c%20right%20lower%20lobe%2c%20adult%2c%20donor1.CNhs11786.10075-102A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lung, right lower lobe, adult, donor1_CNhs11786_10075-102A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10075-102A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LungRightLowerLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LungRightLowerLobeAdultDonor1_CNhs11786_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10075-102A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF625ZGA ENCSR489LNU Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak 4 3443 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/1a478dfb-8363-4d86-977f-e67de11b4e24/ENCFF625ZGA.bigBed\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489LNU Peak\ track wgEncodeReg4Epigenetics_ENCFF625ZGA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF491QKS ENCSR574YRZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN12 ZSCAN12 peaks 4 3443 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/e91820f4-19ec-4e58-bee1-6e43cf7183ae/ENCFF491QKS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN12 ZSCAN12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574YRZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF491QKS\ type bigBed 5\ useScore 1\ visibility squish\ LymphNodeAdultDonor1_CNhs11788_ctss_fwd LymphNodeAdultD1+ bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_forward 0 3443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphNodeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LymphNodeAdultDonor1_CNhs11788_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_tpm_fwd LymphNodeAdultD1+ bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_forward 1 3443 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphNodeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track LymphNodeAdultDonor1_CNhs11788_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF985ZFD ENCSR489LNU Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal 2 3444 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/6f879563-2c33-446e-a728-c2203864355f/ENCFF985ZFD.bigWig\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489LNU Signal\ track wgEncodeReg4Epigenetics_ENCFF985ZFD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF369LBW ENCSR574YRZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN12 ZSCAN12 ENCSR574YRZ signal 2 3444 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/bfe55d35-463b-458b-8b7e-b0e2fa9f690a/ENCFF369LBW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN12 ZSCAN12 ENCSR574YRZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR574YRZ Signal\ track wgEncodeReg4TfChip_ENCFF369LBW\ type bigWig\ visibility full\ LymphNodeAdultDonor1_CNhs11788_ctss_rev LymphNodeAdultD1- bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_reverse 0 3444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel LymphNodeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LymphNodeAdultDonor1_CNhs11788_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ LymphNodeAdultDonor1_CNhs11788_tpm_rev LymphNodeAdultD1- bigWig lymph node, adult, donor1_CNhs11788_10077-102A5_reverse 1 3444 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/lymph%20node%2c%20adult%2c%20donor1.CNhs11788.10077-102A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel lymph node, adult, donor1_CNhs11788_10077-102A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10077-102A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel LymphNodeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track LymphNodeAdultDonor1_CNhs11788_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10077-102A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF094VVT ENCSR489NAM Peak bigBed 5 OCI-LY7 DNase peak 4 3445 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/3cb14c45-30c3-4c7f-b5b4-21d9d06b11b7/ENCFF094VVT.bigBed\ color 6,218,147\ labelFields none\ longLabel OCI-LY7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489NAM Peak\ track wgEncodeReg4Epigenetics_ENCFF094VVT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF478RRB ENCSR575WYM Peak bigBed 5 Middle frontal area 46 tissue female adult (87 years) CTCF peaks 4 3445 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/17baf79a-966e-4217-82fb-f2d5ba8382b2/ENCFF478RRB.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (87 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR575WYM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF478RRB\ type bigBed 5\ useScore 1\ visibility squish\ MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_fwd MedialFrontalGyrusAdultD10196+ bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward 0 3445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_fwd MedialFrontalGyrusAdultD10196+ bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward 1 3445 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF136RNO ENCSR489NAM Signal bigWig OCI-LY7 DNase signal 2 3446 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/c31b96b5-7976-47e7-9347-accefd73bcaf/ENCFF136RNO.bigWig\ color 6,218,147\ longLabel OCI-LY7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489NAM Signal\ track wgEncodeReg4Epigenetics_ENCFF136RNO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF653MQB ENCSR575WYM Signal bigWig Middle frontal area 46 tissue female adult (87 years) CTCF ENCSR575WYM signal 2 3446 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/1617d79f-554f-45b4-aed5-6efd1bc7427d/ENCFF653MQB.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (87 years) CTCF ENCSR575WYM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR575WYM Signal\ track wgEncodeReg4TfChip_ENCFF653MQB\ type bigWig\ visibility full\ MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_rev MedialFrontalGyrusAdultD10196- bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse 0 3446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_rev MedialFrontalGyrusAdultD10196- bigWig medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse 1 3446 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%20-%20adult%2c%20donor10196.CNhs13796.10170-103B8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus - adult, donor10196_CNhs13796_10170-103B8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10170-103B8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10196_CNhs13796_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10170-103B8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF816BTR ENCSR489QDF Peak bigBed 5 Excitatory neuron CTCF peak 4 3447 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/a7e503ff-c215-4ba3-8cef-22930c279dc5/ENCFF816BTR.bigBed\ color 0,176,240\ labelFields none\ longLabel Excitatory neuron CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489QDF Peak\ track wgEncodeReg4Epigenetics_ENCFF816BTR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF990IYL ENCSR576PII Peak bigBed 5 Peyer's patch tissue male adult (54 years) POLR2A peaks 4 3447 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/c1a3dac4-934c-43cc-8973-9dceac0f383c/ENCFF990IYL.bigBed\ labelFields none\ longLabel Peyer's patch tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR576PII Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF990IYL\ type bigBed 5\ useScore 1\ visibility squish\ MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_fwd MedialFrontalGyrusAdultD10252+ bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward 0 3447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_fwd MedialFrontalGyrusAdultD10252+ bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward 1 3447 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF536VOI ENCSR489QDF Signal bigWig Excitatory neuron CTCF signal 2 3448 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/be3bb12c-628f-4b4f-af4c-04a4c6c746d6/ENCFF536VOI.bigWig\ color 0,176,240\ longLabel Excitatory neuron CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489QDF Signal\ track wgEncodeReg4Epigenetics_ENCFF536VOI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF516SWO ENCSR576PII Signal bigWig Peyer's patch tissue male adult (54 years) POLR2A ENCSR576PII signal 2 3448 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/617acc5d-410e-4d07-bb9a-4a0852e05aea/ENCFF516SWO.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (54 years) POLR2A ENCSR576PII signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR576PII Signal\ track wgEncodeReg4TfChip_ENCFF516SWO\ type bigWig\ visibility full\ MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_rev MedialFrontalGyrusAdultD10252- bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse 0 3448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_rev MedialFrontalGyrusAdultD10252- bigWig medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse 1 3448 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10252.CNhs12310.10150-102I6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10252_CNhs12310_10150-102I6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10150-102I6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10252_CNhs12310_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10150-102I6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF098IKI ENCSR489ZLL Peak bigBed 5 Stomach tissue female adult 53 years H3K4me3 peak 4 3449 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2f64f1c7-4665-4197-8860-7cfe1ce6710a/ENCFF098IKI.bigBed\ color 255,0,0\ longLabel Stomach tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489ZLL Peak\ track wgEncodeReg4Epigenetics_ENCFF098IKI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF235JOG ENCSR577KQD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF507 ZNF507 peaks 4 3449 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/b1bfff10-77bc-4978-ab1c-e24491d47f95/ENCFF235JOG.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF507 ZNF507 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR577KQD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF235JOG\ type bigBed 5\ useScore 1\ visibility squish\ MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_fwd MedialFrontalGyrusAdultD10258+ bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward 0 3449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_fwd MedialFrontalGyrusAdultD10258+ bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward 1 3449 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF641DNV ENCSR489ZLL Signal bigWig Stomach tissue female adult 53 years H3K4me3 signal 2 3450 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ad1f61d0-fce4-4c39-b288-e2c1724555d8/ENCFF641DNV.bigWig\ color 255,0,0\ longLabel Stomach tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR489ZLL Signal\ track wgEncodeReg4Epigenetics_ENCFF641DNV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF514TMD ENCSR577KQD Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF507 ZNF507 ENCSR577KQD signal 2 3450 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/99db68a1-6df5-4334-b93c-963d06041f1d/ENCFF514TMD.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF507 ZNF507 ENCSR577KQD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR577KQD Signal\ track wgEncodeReg4TfChip_ENCFF514TMD\ type bigWig\ visibility full\ MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_rev MedialFrontalGyrusAdultD10258- bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse 0 3450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_rev MedialFrontalGyrusAdultD10258- bigWig medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse 1 3450 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20adult%2c%20donor10258.CNhs14221.10368-105F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, adult, donor10258_CNhs14221_10368-105F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10368-105F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusAdultDonor10258_CNhs14221_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10368-105F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF654MXT ENCSR490MSG Peak bigBed 5 Ovary tissue female adult 53 years ATAC peak 4 3451 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/6c700aa1-a8ec-475f-8622-d0c8654d9887/ENCFF654MXT.bigBed\ color 2,199,185\ longLabel Ovary tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR490MSG Peak\ track wgEncodeReg4Epigenetics_ENCFF654MXT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF778RZN ENCSR577YCO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARHGAP35 ARHGAP35 peaks 4 3451 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/e9301404-54cd-441f-bb29-57fabd5c975a/ENCFF778RZN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARHGAP35 ARHGAP35 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR577YCO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF778RZN\ type bigBed 5\ useScore 1\ visibility squish\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_fwd MedialFrontalGyrusNbD10223+ bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward 0 3451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_fwd MedialFrontalGyrusNbD10223+ bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward 1 3451 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF644YMB ENCSR490MSG Signal bigWig Ovary tissue female adult 53 years ATAC signal 2 3452 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/426987fc-b2f3-4d44-afa5-a7d67ed2f05f/ENCFF644YMB.bigWig\ color 2,199,185\ longLabel Ovary tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR490MSG Signal\ track wgEncodeReg4Epigenetics_ENCFF644YMB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF801SCF ENCSR577YCO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARHGAP35 ARHGAP35 ENCSR577YCO signal 2 3452 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/23feae47-3054-4df2-81f6-437bb5847499/ENCFF801SCF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARHGAP35 ARHGAP35 ENCSR577YCO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR577YCO Signal\ track wgEncodeReg4TfChip_ENCFF801SCF\ type bigWig\ visibility full\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_rev MedialFrontalGyrusNbD10223- bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse 0 3452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialFrontalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_rev MedialFrontalGyrusNbD10223- bigWig medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse 1 3452 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20frontal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14069.10352-105E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial frontal gyrus, newborn, donor10223_CNhs14069_10352-105E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10352-105E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialFrontalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialFrontalGyrusNewbornDonor10223_CNhs14069_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10352-105E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF301PKA ENCSR490UQP Peak bigBed 5 Middle frontal area 46 tissue female adult 87 years DNase peak 4 3453 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/8ef219fb-85b1-4673-a6bd-8e7f38b1efb6/ENCFF301PKA.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR490UQP Peak\ track wgEncodeReg4Epigenetics_ENCFF301PKA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF832OXT ENCSR578AKX Peak bigBed 5 Heart left ventricle tissue male adult (73 years) CTCF peaks 4 3453 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/aa1b9cff-8388-459b-a59e-f2743602fc1d/ENCFF832OXT.bigBed\ labelFields none\ longLabel Heart left ventricle tissue male adult (73 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR578AKX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF832OXT\ type bigBed 5\ useScore 1\ visibility squish\ MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_fwd MedialTemporalGyrusAdultD10196+ bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward 0 3453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_fwd MedialTemporalGyrusAdultD10196+ bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward 1 3453 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF497CVA ENCSR490UQP Signal bigWig Middle frontal area 46 tissue female adult 87 years DNase signal 2 3454 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/650a855b-0b69-41ac-bc01-805d87ff2c59/ENCFF497CVA.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR490UQP Signal\ track wgEncodeReg4Epigenetics_ENCFF497CVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF992WUL ENCSR578AKX Signal bigWig Heart left ventricle tissue male adult (73 years) CTCF ENCSR578AKX signal 2 3454 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6811b31c-1a65-4d91-bc8b-3f4bfe9ab9fb/ENCFF992WUL.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (73 years) CTCF ENCSR578AKX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR578AKX Signal\ track wgEncodeReg4TfChip_ENCFF992WUL\ type bigWig\ visibility full\ MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_rev MedialTemporalGyrusAdultD10196- bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse 0 3454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_rev MedialTemporalGyrusAdultD10196- bigWig medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse 1 3454 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%20-%20adult%2c%20donor10196.CNhs13809.10183-103D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus - adult, donor10196_CNhs13809_10183-103D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10183-103D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10196_CNhs13809_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10183-103D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF316QSG ENCSR491VXJ Peak bigBed 5 Mucosa of descending colon tissue male adult 26 years ATAC peak 4 3455 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/f7e16937-7985-4979-9952-5c5ec84c59f0/ENCFF316QSG.bigBed\ color 2,199,185\ longLabel Mucosa of descending colon tissue male adult 26 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR491VXJ Peak\ track wgEncodeReg4Epigenetics_ENCFF316QSG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF352VGJ ENCSR578CXC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF644 ZNF644 peaks 4 3455 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/6934f419-b5ed-405f-8589-c0dce7456442/ENCFF352VGJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF644 ZNF644 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR578CXC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF352VGJ\ type bigBed 5\ useScore 1\ visibility squish\ MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_fwd MedialTemporalGyrusAdultD10252+ bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward 0 3455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_fwd MedialTemporalGyrusAdultD10252+ bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward 1 3455 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF808LOI ENCSR491VXJ Signal bigWig Mucosa of descending colon tissue male adult 26 years ATAC signal 2 3456 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/4ca55bc0-0fe3-415e-9d41-01d215b46b8b/ENCFF808LOI.bigWig\ color 2,199,185\ longLabel Mucosa of descending colon tissue male adult 26 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR491VXJ Signal\ track wgEncodeReg4Epigenetics_ENCFF808LOI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF099DFU ENCSR578CXC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF644 ZNF644 ENCSR578CXC signal 2 3456 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/b44affe5-a6e5-4c21-a13a-8a184b6b46d1/ENCFF099DFU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF644 ZNF644 ENCSR578CXC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR578CXC Signal\ track wgEncodeReg4TfChip_ENCFF099DFU\ type bigWig\ visibility full\ MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_rev MedialTemporalGyrusAdultD10252- bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse 0 3456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_rev MedialTemporalGyrusAdultD10252- bigWig medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse 1 3456 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10252.CNhs12316.10156-103A3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10252_CNhs12316_10156-103A3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10156-103A3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10252_CNhs12316_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10156-103A3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF632SRQ ENCSR492BHN Peak bigBed 5 Stomach tissue female adult 51 years H3K4me3 peak 4 3457 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/506c0ec8-28df-4144-a526-51a917321617/ENCFF632SRQ.bigBed\ color 255,0,0\ longLabel Stomach tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492BHN Peak\ track wgEncodeReg4Epigenetics_ENCFF632SRQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF397QGU ENCSR578KEN Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 peaks 4 3457 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/c808cfef-fa31-40e4-b3b1-d546a3b87a5a/ENCFF397QGU.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR578KEN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF397QGU\ type bigBed 5\ useScore 1\ visibility squish\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_fwd MedialTemporalGyrusAdultD10258Tr1+ bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward 0 3457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_fwd MedialTemporalGyrusAdultD10258Tr1+ bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward 1 3457 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF283ZMI ENCSR492BHN Signal bigWig Stomach tissue female adult 51 years H3K4me3 signal 2 3458 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/031e3105-7eac-4aa3-b40c-2d37802d0081/ENCFF283ZMI.bigWig\ color 255,0,0\ longLabel Stomach tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492BHN Signal\ track wgEncodeReg4Epigenetics_ENCFF283ZMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF283YAM ENCSR578KEN Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 ENCSR578KEN signal 2 3458 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/55659046-fe94-452d-9d4f-c39bdeecbda5/ENCFF283YAM.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2 USF2 ENCSR578KEN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR578KEN Signal\ track wgEncodeReg4TfChip_ENCFF283YAM\ type bigWig\ visibility full\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_rev MedialTemporalGyrusAdultD10258Tr1- bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse 0 3458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_rev MedialTemporalGyrusAdultD10258Tr1- bigWig medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse 1 3458 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14229.10376-105G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep1_CNhs14229_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep1_CNhs14229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF055GHR ENCSR492FJO Peak bigBed 5 GM18867 ATAC peak 4 3459 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/79db360c-4189-4bd5-909b-ab808071e326/ENCFF055GHR.bigBed\ color 2,199,185\ longLabel GM18867 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492FJO Peak\ track wgEncodeReg4Epigenetics_ENCFF055GHR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF158CQE ENCSR579XWM Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens HSF4 HSF4 peaks 4 3459 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/6b9b034b-efb1-4be3-8b0d-873e4b8f2450/ENCFF158CQE.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens HSF4 HSF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR579XWM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF158CQE\ type bigBed 5\ useScore 1\ visibility squish\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_fwd MedialTemporalGyrusAdultD10258Tr2+ bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward 0 3459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_fwd MedialTemporalGyrusAdultD10258Tr2+ bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward 1 3459 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF829IFA ENCSR492FJO Signal bigWig GM18867 ATAC signal 2 3460 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/be878236-6457-41f6-b634-2899fa346db5/ENCFF829IFA.bigWig\ color 2,199,185\ longLabel GM18867 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492FJO Signal\ track wgEncodeReg4Epigenetics_ENCFF829IFA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF462OEE ENCSR579XWM Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens HSF4 HSF4 ENCSR579XWM signal 2 3460 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/94661154-441c-4a54-a883-25637a91cb30/ENCFF462OEE.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens HSF4 HSF4 ENCSR579XWM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR579XWM Signal\ track wgEncodeReg4TfChip_ENCFF462OEE\ type bigWig\ visibility full\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_rev MedialTemporalGyrusAdultD10258Tr2- bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse 0 3460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_rev MedialTemporalGyrusAdultD10258Tr2- bigWig medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse 1 3460 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14552.10376-105G7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, adult, donor10258, tech_rep2_CNhs14552_10376-105G7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10376-105G7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusAdultDonor10258TechRep2_CNhs14552_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10376-105G7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF613PGE ENCSR492PXH Peak bigBed 5 Endocrine pancreas tissue adult 59 years H3K27ac peak 4 3461 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e8720094-1a25-438d-8efe-a520a0d79cde/ENCFF613PGE.bigBed\ color 181,145,0\ longLabel Endocrine pancreas tissue adult 59 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492PXH Peak\ track wgEncodeReg4Epigenetics_ENCFF613PGE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF872FLG ENCSR580HOI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RELA RELA peaks 4 3461 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/4ff3730b-cc2b-4b38-bfac-843a81f0fa43/ENCFF872FLG.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RELA RELA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR580HOI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF872FLG\ type bigBed 5\ useScore 1\ visibility squish\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_fwd MedialTemporalGyrusNbD10223+ bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward 0 3461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_fwd MedialTemporalGyrusNbD10223+ bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward 1 3461 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF314ZFV ENCSR492PXH Signal bigWig Endocrine pancreas tissue adult 59 years H3K27ac signal 2 3462 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/f345d24a-ed31-4490-bc8d-5d7d183b2e54/ENCFF314ZFV.bigWig\ color 181,145,0\ longLabel Endocrine pancreas tissue adult 59 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492PXH Signal\ track wgEncodeReg4Epigenetics_ENCFF314ZFV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF111KZQ ENCSR580HOI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RELA RELA ENCSR580HOI signal 2 3462 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/33d58480-03b6-461c-b255-41d2e4e6f4a4/ENCFF111KZQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RELA RELA ENCSR580HOI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR580HOI Signal\ track wgEncodeReg4TfChip_ENCFF111KZQ\ type bigWig\ visibility full\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_rev MedialTemporalGyrusNbD10223- bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse 0 3462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedialTemporalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_rev MedialTemporalGyrusNbD10223- bigWig medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse 1 3462 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medial%20temporal%20gyrus%2c%20newborn%2c%20donor10223.CNhs14070.10353-105E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medial temporal gyrus, newborn, donor10223_CNhs14070_10353-105E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10353-105E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedialTemporalGyrusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedialTemporalGyrusNewbornDonor10223_CNhs14070_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10353-105E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF631QRY ENCSR492ZIW Peak bigBed 5 Thyroid gland tissue male adult 54 years CTCF peak 4 3463 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/892d9693-a169-4c07-8d8f-42e80a6c6cd8/ENCFF631QRY.bigBed\ color 0,176,240\ labelFields none\ longLabel Thyroid gland tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492ZIW Peak\ track wgEncodeReg4Epigenetics_ENCFF631QRY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF872BAU ENCSR580IAO Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF197 ZNF197 peaks 4 3463 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/bf81b8ba-0b81-42d3-8785-a161a2f4a862/ENCFF872BAU.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF197 ZNF197 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR580IAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF872BAU\ type bigBed 5\ useScore 1\ visibility squish\ MedullaOblongataAdultDonor10196_CNhs13800_ctss_fwd MedullaOblongataAdultD10196+ bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward 0 3463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10196_CNhs13800_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_tpm_fwd MedullaOblongataAdultD10196+ bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward 1 3463 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10196_CNhs13800_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF510THG ENCSR492ZIW Signal bigWig Thyroid gland tissue male adult 54 years CTCF signal 2 3464 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9dcba5d7-25f2-4114-84a3-2c417af4ad2e/ENCFF510THG.bigWig\ color 0,176,240\ longLabel Thyroid gland tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR492ZIW Signal\ track wgEncodeReg4Epigenetics_ENCFF510THG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF736ZOP ENCSR580IAO Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF197 ZNF197 ENCSR580IAO signal 2 3464 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4c9410e7-34b9-4cf0-9b25-38c33f60f95e/ENCFF736ZOP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF197 ZNF197 ENCSR580IAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR580IAO Signal\ track wgEncodeReg4TfChip_ENCFF736ZOP\ type bigWig\ visibility full\ MedullaOblongataAdultDonor10196_CNhs13800_ctss_rev MedullaOblongataAdultD10196- bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse 0 3464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10196_CNhs13800_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10196_CNhs13800_tpm_rev MedullaOblongataAdultD10196- bigWig medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse 1 3464 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%20-%20adult%2c%20donor10196.CNhs13800.10174-103C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata - adult, donor10196_CNhs13800_10174-103C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10174-103C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10196_CNhs13800_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10174-103C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF062XMG ENCSR493APD Peak bigBed 5 Ovary tissue female adult 53 years CTCF peak 4 3465 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8f28af79-259b-4b73-b02f-5dbcffb59c4d/ENCFF062XMG.bigBed\ color 0,176,240\ labelFields none\ longLabel Ovary tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493APD Peak\ track wgEncodeReg4Epigenetics_ENCFF062XMG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF346AYA ENCSR580XUK Peak bigBed 5 Tibial nerve tissue male adult (37 years) EP300 peaks 4 3465 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/e600e8d6-aee2-47e7-8085-6c48234fc680/ENCFF346AYA.bigBed\ labelFields none\ longLabel Tibial nerve tissue male adult (37 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR580XUK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF346AYA\ type bigBed 5\ useScore 1\ visibility squish\ MedullaOblongataAdultDonor10252_CNhs12315_ctss_fwd MedullaOblongataAdultD10252+ bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward 0 3465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10252_CNhs12315_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_tpm_fwd MedullaOblongataAdultD10252+ bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward 1 3465 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultDonor10252_CNhs12315_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF971DUO ENCSR493APD Signal bigWig Ovary tissue female adult 53 years CTCF signal 2 3466 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/66c0082c-1736-4796-b42c-e25688827b50/ENCFF971DUO.bigWig\ color 0,176,240\ longLabel Ovary tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493APD Signal\ track wgEncodeReg4Epigenetics_ENCFF971DUO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF148VJK ENCSR580XUK Signal bigWig Tibial nerve tissue male adult (37 years) EP300 ENCSR580XUK signal 2 3466 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f7681c79-f53b-40da-84e7-f879e4761f68/ENCFF148VJK.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue male adult (37 years) EP300 ENCSR580XUK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR580XUK Signal\ track wgEncodeReg4TfChip_ENCFF148VJK\ type bigWig\ visibility full\ MedullaOblongataAdultDonor10252_CNhs12315_ctss_rev MedullaOblongataAdultD10252- bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse 0 3466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10252_CNhs12315_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultDonor10252_CNhs12315_tpm_rev MedullaOblongataAdultD10252- bigWig medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse 1 3466 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20donor10252.CNhs12315.10155-103A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, donor10252_CNhs12315_10155-103A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10155-103A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultDonor10252_CNhs12315_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10155-103A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF104TEA ENCSR493IAY Peak bigBed 5 Hematopoietic multipotent progenitor cell treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days DNase peak 4 3467 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/26dc3833-27b7-489f-92bf-ca26cdff805a/ENCFF104TEA.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493IAY Peak\ track wgEncodeReg4Epigenetics_ENCFF104TEA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF981MBE ENCSR581GUY Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZFP3 treated with 6 μM all-trans-retinoic acid for 48 hours ZFP3 peaks 4 3467 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/cc2c7ce4-b805-45e5-a8cc-fb5a5716b712/ENCFF981MBE.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZFP3 treated with 6 μM all-trans-retinoic acid for 48 hours ZFP3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR581GUY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF981MBE\ type bigBed 5\ useScore 1\ visibility squish\ MedullaOblongataAdultPool1_CNhs10645_ctss_fwd MedullaOblongataAdultPl1+ bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward 0 3467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultPool1_CNhs10645_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_tpm_fwd MedullaOblongataAdultPl1+ bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward 1 3467 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataAdultPool1_CNhs10645_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF028ZFZ ENCSR493IAY Signal bigWig Hematopoietic multipotent progenitor cell treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days DNase signal 2 3468 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/70b48123-ac54-4d87-a1ab-2a51ff61792f/ENCFF028ZFZ.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 18 days, kit ligand for 18 days, hydrocortisone succinate for 18 days, erythropoietin for 18 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493IAY Signal\ track wgEncodeReg4Epigenetics_ENCFF028ZFZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF326FOR ENCSR581GUY Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZFP3 treated with 6 μM all-trans-retinoic acid for 48 hours ZFP3 ENCSR581GUY signal 2 3468 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/d8ee9c89-3201-4ff5-b784-5480e054a6df/ENCFF326FOR.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZFP3 treated with 6 μM all-trans-retinoic acid for 48 hours ZFP3 ENCSR581GUY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR581GUY Signal\ track wgEncodeReg4TfChip_ENCFF326FOR\ type bigWig\ visibility full\ MedullaOblongataAdultPool1_CNhs10645_ctss_rev MedullaOblongataAdultPl1- bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse 0 3468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultPool1_CNhs10645_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ MedullaOblongataAdultPool1_CNhs10645_tpm_rev MedullaOblongataAdultPl1- bigWig medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse 1 3468 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20adult%2c%20pool1.CNhs10645.10038-101F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, adult, pool1_CNhs10645_10038-101F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10038-101F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataAdultPool1_CNhs10645_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10038-101F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF851NIZ ENCSR493IQY Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak 4 3469 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/102e6996-a078-456e-a622-76b1c086d524/ENCFF851NIZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493IQY Peak\ track wgEncodeReg4Epigenetics_ENCFF851NIZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF650QJC ENCSR581KCO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYBL2 MYBL2 peaks 4 3469 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/cd48c2b9-fab3-4781-bb93-d392d6d08c88/ENCFF650QJC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYBL2 MYBL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR581KCO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF650QJC\ type bigBed 5\ useScore 1\ visibility squish\ MedullaOblongataNewbornDonor10223_CNhs14079_ctss_fwd MedullaOblongataNbD10223+ bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward 0 3469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataNewbornDonor10223_CNhs14079_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_tpm_fwd MedullaOblongataNbD10223+ bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward 1 3469 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track MedullaOblongataNewbornDonor10223_CNhs14079_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF719PPB ENCSR493IQY Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal 2 3470 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/61bda7ec-ee54-4dad-8c2a-d5d430866499/ENCFF719PPB.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493IQY Signal\ track wgEncodeReg4Epigenetics_ENCFF719PPB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF318UXO ENCSR581KCO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYBL2 MYBL2 ENCSR581KCO signal 2 3470 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/6a59ac39-c276-41f2-b1ec-4dc2df86a42c/ENCFF318UXO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYBL2 MYBL2 ENCSR581KCO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR581KCO Signal\ track wgEncodeReg4TfChip_ENCFF318UXO\ type bigWig\ visibility full\ MedullaOblongataNewbornDonor10223_CNhs14079_ctss_rev MedullaOblongataNbD10223- bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse 0 3470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel MedullaOblongataNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataNewbornDonor10223_CNhs14079_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ MedullaOblongataNewbornDonor10223_CNhs14079_tpm_rev MedullaOblongataNbD10223- bigWig medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse 1 3470 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/medulla%20oblongata%2c%20newborn%2c%20donor10223.CNhs14079.10361-105F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel medulla oblongata, newborn, donor10223_CNhs14079_10361-105F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10361-105F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel MedullaOblongataNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track MedullaOblongataNewbornDonor10223_CNhs14079_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10361-105F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF618ZGU ENCSR493VDS Peak bigBed 5 Putamen tissue male adult 78 years DNase peak 4 3471 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/fdef8fef-dbf9-4917-ba23-cd69cf5de0ae/ENCFF618ZGU.bigBed\ color 6,218,147\ labelFields none\ longLabel Putamen tissue male adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493VDS Peak\ track wgEncodeReg4Epigenetics_ENCFF618ZGU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF958IPC ENCSR582EIB Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830 ZNF830 peaks 4 3471 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/30a889c8-6522-4d00-9527-8acad0004656/ENCFF958IPC.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830 ZNF830 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR582EIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF958IPC\ type bigBed 5\ useScore 1\ visibility squish\ NucleusAccumbensAdultPool1_CNhs10644_ctss_fwd NucleusAccumbensAdultPl1+ bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward 0 3471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusAccumbensAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track NucleusAccumbensAdultPool1_CNhs10644_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_tpm_fwd NucleusAccumbensAdultPl1+ bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward 1 3471 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusAccumbensAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track NucleusAccumbensAdultPool1_CNhs10644_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF614XBI ENCSR493VDS Signal bigWig Putamen tissue male adult 78 years DNase signal 2 3472 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/52a41f81-4333-4cab-9629-6120d9f4124c/ENCFF614XBI.bigWig\ color 6,218,147\ longLabel Putamen tissue male adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR493VDS Signal\ track wgEncodeReg4Epigenetics_ENCFF614XBI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF540LQS ENCSR582EIB Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830 ZNF830 ENCSR582EIB signal 2 3472 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/c7a0ea2f-3614-4fe0-93ef-213bbcce0bc4/ENCFF540LQS.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF830 ZNF830 ENCSR582EIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR582EIB Signal\ track wgEncodeReg4TfChip_ENCFF540LQS\ type bigWig\ visibility full\ NucleusAccumbensAdultPool1_CNhs10644_ctss_rev NucleusAccumbensAdultPl1- bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse 0 3472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel NucleusAccumbensAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track NucleusAccumbensAdultPool1_CNhs10644_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ NucleusAccumbensAdultPool1_CNhs10644_tpm_rev NucleusAccumbensAdultPl1- bigWig nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse 1 3472 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/nucleus%20accumbens%2c%20adult%2c%20pool1.CNhs10644.10037-101F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel nucleus accumbens, adult, pool1_CNhs10644_10037-101F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10037-101F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel NucleusAccumbensAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track NucleusAccumbensAdultPool1_CNhs10644_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10037-101F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF139CYD ENCSR494IWJ Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase peak 4 3473 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/ac95f31d-91c8-4e68-9c49-2664563f2e92/ENCFF139CYD.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494IWJ Peak\ track wgEncodeReg4Epigenetics_ENCFF139CYD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF766EOO ENCSR582IAO Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF peaks 4 3473 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/f6812d5a-e1c1-4dc6-9976-c422fb06b536/ENCFF766EOO.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR582IAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF766EOO\ type bigBed 5\ useScore 1\ visibility squish\ OccipitalCortexAdultDonor10196_CNhs13798_ctss_fwd OccipitalCortexAdultD10196+ bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward 0 3473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10196_CNhs13798_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_tpm_fwd OccipitalCortexAdultD10196+ bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward 1 3473 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10196_CNhs13798_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF994FRW ENCSR494IWJ Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase signal 2 3474 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/94e46a7f-3c93-4e9d-b23d-0fb3be078d23/ENCFF994FRW.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494IWJ Signal\ track wgEncodeReg4Epigenetics_ENCFF994FRW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF106VTZ ENCSR582IAO Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF ENCSR582IAO signal 2 3474 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/e55d5047-cf7f-4e3e-adee-f26ecf9e1a09/ENCFF106VTZ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens SRF SRF ENCSR582IAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR582IAO Signal\ track wgEncodeReg4TfChip_ENCFF106VTZ\ type bigWig\ visibility full\ OccipitalCortexAdultDonor10196_CNhs13798_ctss_rev OccipitalCortexAdultD10196- bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse 0 3474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10196_CNhs13798_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10196_CNhs13798_tpm_rev OccipitalCortexAdultD10196- bigWig occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse 1 3474 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%20-%20adult%2c%20donor10196.CNhs13798.10172-103C1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex - adult, donor10196_CNhs13798_10172-103C1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10172-103C1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10196_CNhs13798_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10172-103C1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF534OZS ENCSR494LJG Peak bigBed 5 SU-DHL-6 H3K4me3 peak 4 3475 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b8a4a1a3-6ca7-4442-b02e-d358f3ca67d0/ENCFF534OZS.bigBed\ color 255,0,0\ longLabel SU-DHL-6 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494LJG Peak\ track wgEncodeReg4Epigenetics_ENCFF534OZS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF414KCF ENCSR582MTM Peak bigBed 5 Lower leg skin tissue male adult (37 years) CTCF peaks 4 3475 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a0060f7a-f33f-4588-8ddf-0dcc392b83d1/ENCFF414KCF.bigBed\ labelFields none\ longLabel Lower leg skin tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR582MTM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF414KCF\ type bigBed 5\ useScore 1\ visibility squish\ OccipitalCortexAdultDonor10252_CNhs12320_ctss_fwd OccipitalCortexAdultD10252+ bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward 0 3475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10252_CNhs12320_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_tpm_fwd OccipitalCortexAdultD10252+ bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward 1 3475 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexAdultDonor10252_CNhs12320_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF185LXV ENCSR494LJG Signal bigWig SU-DHL-6 H3K4me3 signal 2 3476 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/da1374e3-734a-444d-b481-4d8ed0739ed7/ENCFF185LXV.bigWig\ color 255,0,0\ longLabel SU-DHL-6 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494LJG Signal\ track wgEncodeReg4Epigenetics_ENCFF185LXV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF838CRU ENCSR582MTM Signal bigWig Lower leg skin tissue male adult (37 years) CTCF ENCSR582MTM signal 2 3476 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d3ce988c-89cf-491a-9d18-d8a9f9780061/ENCFF838CRU.bigWig\ color 127,133,209\ longLabel Lower leg skin tissue male adult (37 years) CTCF ENCSR582MTM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR582MTM Signal\ track wgEncodeReg4TfChip_ENCFF838CRU\ type bigWig\ visibility full\ OccipitalCortexAdultDonor10252_CNhs12320_ctss_rev OccipitalCortexAdultD10252- bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse 0 3476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10252_CNhs12320_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ OccipitalCortexAdultDonor10252_CNhs12320_tpm_rev OccipitalCortexAdultD10252- bigWig occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse 1 3476 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20adult%2c%20donor10252.CNhs12320.10163-103B1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex, adult, donor10252_CNhs12320_10163-103B1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10163-103B1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexAdultDonor10252_CNhs12320_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10163-103B1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF905RPO ENCSR494MDB Peak bigBed 5 Caudate nucleus tissue male adult 81 years H3K27ac peak 4 3477 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3a0e91f0-d020-41a3-98ff-503490ecb82f/ENCFF905RPO.bigBed\ color 181,145,0\ longLabel Caudate nucleus tissue male adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494MDB Peak\ track wgEncodeReg4Epigenetics_ENCFF905RPO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF925CGH ENCSR582ZOA Peak bigBed 5 MCF-7 NFIB peaks 4 3477 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a81d4fbc-6d49-41a6-a460-74695ef03ebc/ENCFF925CGH.bigBed\ labelFields none\ longLabel MCF-7 NFIB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR582ZOA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF925CGH\ type bigBed 5\ useScore 1\ visibility squish\ OccipitalCortexNewbornDonor10223_CNhs14073_ctss_fwd OccipitalCortexNbD10223+ bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward 0 3477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexNewbornDonor10223_CNhs14073_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_tpm_fwd OccipitalCortexNbD10223+ bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward 1 3477 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalCortexNewbornDonor10223_CNhs14073_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF013OYT ENCSR494MDB Signal bigWig Caudate nucleus tissue male adult 81 years H3K27ac signal 2 3478 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/45ee7b54-b73c-4ed9-9971-3ece3868f0f8/ENCFF013OYT.bigWig\ color 181,145,0\ longLabel Caudate nucleus tissue male adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494MDB Signal\ track wgEncodeReg4Epigenetics_ENCFF013OYT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF092PWQ ENCSR583ACG Peak bigBed 5 K562 BRD4 peaks 4 3478 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/28956753-0ef0-4c2b-99d0-b60612257797/ENCFF092PWQ.bigBed\ labelFields none\ longLabel K562 BRD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR583ACG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF092PWQ\ type bigBed 5\ useScore 1\ visibility squish\ OccipitalCortexNewbornDonor10223_CNhs14073_ctss_rev OccipitalCortexNbD10223- bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse 0 3478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalCortexNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexNewbornDonor10223_CNhs14073_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ OccipitalCortexNewbornDonor10223_CNhs14073_tpm_rev OccipitalCortexNbD10223- bigWig occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse 1 3478 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20cortex%2c%20newborn%2c%20donor10223.CNhs14073.10355-105E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital cortex, newborn, donor10223_CNhs14073_10355-105E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10355-105E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalCortexNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalCortexNewbornDonor10223_CNhs14073_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10355-105E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF101QGY ENCSR494QLL Peak bigBed 5 Heart right ventricle tissue female adult 56 years H3K4me3 peak 4 3479 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/1cd56e2d-4551-43a7-9ceb-1c35742f6235/ENCFF101QGY.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue female adult 56 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494QLL Peak\ track wgEncodeReg4Epigenetics_ENCFF101QGY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF251SRH ENCSR583ACG Signal bigWig K562 BRD4 ENCSR583ACG signal 2 3479 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d7ea255f-699d-44fb-84e5-53a5981f2d91/ENCFF251SRH.bigWig\ color 254,75,173\ longLabel K562 BRD4 ENCSR583ACG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR583ACG Signal\ track wgEncodeReg4TfChip_ENCFF251SRH\ type bigWig\ visibility full\ OccipitalLobeAdultDonor1_CNhs11787_ctss_fwd OccipitalLobeAdultD1+ bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward 0 3479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeAdultDonor1_CNhs11787_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_tpm_fwd OccipitalLobeAdultD1+ bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward 1 3479 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeAdultDonor1_CNhs11787_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF446ELY ENCSR494QLL Signal bigWig Heart right ventricle tissue female adult 56 years H3K4me3 signal 2 3480 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/a8c88acf-8415-4376-8554-9216210cf96f/ENCFF446ELY.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue female adult 56 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494QLL Signal\ track wgEncodeReg4Epigenetics_ENCFF446ELY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF661AUQ ENCSR583KLD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEF TEF peaks 4 3480 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/ac600cf2-6217-4fc7-8a43-db80e3bfe0b7/ENCFF661AUQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEF TEF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR583KLD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF661AUQ\ type bigBed 5\ useScore 1\ visibility squish\ OccipitalLobeAdultDonor1_CNhs11787_ctss_rev OccipitalLobeAdultD1- bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse 0 3480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeAdultDonor1_CNhs11787_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ OccipitalLobeAdultDonor1_CNhs11787_tpm_rev OccipitalLobeAdultD1- bigWig occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse 1 3480 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20adult%2c%20donor1.CNhs11787.10076-102A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital lobe, adult, donor1_CNhs11787_10076-102A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10076-102A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeAdultDonor1_CNhs11787_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10076-102A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF339VLN ENCSR494WCX Peak bigBed 5 Left lung tissue male adult 40 years H3K27ac peak 4 3481 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/a2f72c45-b4b9-43ab-95ae-b19adc19c450/ENCFF339VLN.bigBed\ color 181,145,0\ longLabel Left lung tissue male adult 40 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494WCX Peak\ track wgEncodeReg4Epigenetics_ENCFF339VLN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF893GQJ ENCSR583KLD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEF TEF ENCSR583KLD signal 2 3481 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/dc3158d9-3b18-4692-8c43-254a56e99a1d/ENCFF893GQJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEF TEF ENCSR583KLD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR583KLD Signal\ track wgEncodeReg4TfChip_ENCFF893GQJ\ type bigWig\ visibility full\ OccipitalLobeFetalDonor1_CNhs11784_ctss_fwd OccipitalLobeFetalD1+ bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward 0 3481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeFetalDonor1_CNhs11784_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_tpm_fwd OccipitalLobeFetalD1+ bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward 1 3481 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalLobeFetalDonor1_CNhs11784_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF441OEQ ENCSR494WCX Signal bigWig Left lung tissue male adult 40 years H3K27ac signal 2 3482 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/6e53231f-fb45-4c75-a172-ea3d8f317774/ENCFF441OEQ.bigWig\ color 181,145,0\ longLabel Left lung tissue male adult 40 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494WCX Signal\ track wgEncodeReg4Epigenetics_ENCFF441OEQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF864SAR ENCSR584DEL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543 ZNF543 peaks 4 3482 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/63fed8f0-e270-4aae-b18c-7f5ff70317a2/ENCFF864SAR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543 ZNF543 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR584DEL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF864SAR\ type bigBed 5\ useScore 1\ visibility squish\ OccipitalLobeFetalDonor1_CNhs11784_ctss_rev OccipitalLobeFetalD1- bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse 0 3482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeFetalDonor1_CNhs11784_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ OccipitalLobeFetalDonor1_CNhs11784_tpm_rev OccipitalLobeFetalD1- bigWig occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse 1 3482 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20lobe%2c%20fetal%2c%20donor1.CNhs11784.10073-102A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital lobe, fetal, donor1_CNhs11784_10073-102A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10073-102A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalLobeFetalDonor1_CNhs11784_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10073-102A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF359YRD ENCSR494YVB Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K4me3 peak 4 3483 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/fcd3b2ee-b595-4ece-8ad2-5c3073260a2b/ENCFF359YRD.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494YVB Peak\ track wgEncodeReg4Epigenetics_ENCFF359YRD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF883IUZ ENCSR584DEL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543 ZNF543 ENCSR584DEL signal 2 3483 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/79c17153-f667-45c5-a023-08fdc45e82d4/ENCFF883IUZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF543 ZNF543 ENCSR584DEL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR584DEL Signal\ track wgEncodeReg4TfChip_ENCFF883IUZ\ type bigWig\ visibility full\ OccipitalPoleAdultPool1_CNhs10643_ctss_fwd OccipitalPoleAdultPl1+ bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_forward 0 3483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalPoleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalPoleAdultPool1_CNhs10643_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_tpm_fwd OccipitalPoleAdultPl1+ bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_forward 1 3483 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalPoleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OccipitalPoleAdultPool1_CNhs10643_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF021HGF ENCSR494YVB Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K4me3 signal 2 3484 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/0cf746d0-03aa-4d2b-adca-ba27f72563ee/ENCFF021HGF.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR494YVB Signal\ track wgEncodeReg4Epigenetics_ENCFF021HGF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF474YMB ENCSR584GHV Peak bigBed 5 A549 NFE2L2 peaks 4 3484 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/2f53192e-e2a5-4e8c-939b-cb168aa47067/ENCFF474YMB.bigBed\ labelFields none\ longLabel A549 NFE2L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR584GHV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF474YMB\ type bigBed 5\ useScore 1\ visibility squish\ OccipitalPoleAdultPool1_CNhs10643_ctss_rev OccipitalPoleAdultPl1- bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse 0 3484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OccipitalPoleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalPoleAdultPool1_CNhs10643_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ OccipitalPoleAdultPool1_CNhs10643_tpm_rev OccipitalPoleAdultPl1- bigWig occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse 1 3484 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/occipital%20pole%2c%20adult%2c%20pool1.CNhs10643.10036-101E9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel occipital pole, adult, pool1_CNhs10643_10036-101E9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10036-101E9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OccipitalPoleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OccipitalPoleAdultPool1_CNhs10643_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10036-101E9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF135MSV ENCSR495HIT Peak bigBed 5 Middle frontal area 46 tissue male adult 71 years H3K27ac peak 4 3485 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/bdc1b66f-ba1b-44c8-8350-e072779f37f7/ENCFF135MSV.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 71 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR495HIT Peak\ track wgEncodeReg4Epigenetics_ENCFF135MSV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF796HRU ENCSR584GHV Signal bigWig A549 NFE2L2 ENCSR584GHV signal 2 3485 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/5b83960b-89c2-41f7-9b1e-41a0ed86dca7/ENCFF796HRU.bigWig\ color 130,163,45\ longLabel A549 NFE2L2 ENCSR584GHV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR584GHV Signal\ track wgEncodeReg4TfChip_ENCFF796HRU\ type bigWig\ visibility full\ OlfactoryRegionAdult_CNhs12611_ctss_fwd OlfactoryRegionAdult+ bigWig olfactory region, adult_CNhs12611_10195-103E6_forward 0 3485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel olfactory region, adult_CNhs12611_10195-103E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryRegionAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OlfactoryRegionAdult_CNhs12611_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_tpm_fwd OlfactoryRegionAdult+ bigWig olfactory region, adult_CNhs12611_10195-103E6_forward 1 3485 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel olfactory region, adult_CNhs12611_10195-103E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryRegionAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OlfactoryRegionAdult_CNhs12611_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF242WZH ENCSR495HIT Signal bigWig Middle frontal area 46 tissue male adult 71 years H3K27ac signal 2 3486 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/d1ad5f4e-547d-4277-88a8-045b15a2d388/ENCFF242WZH.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 71 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR495HIT Signal\ track wgEncodeReg4Epigenetics_ENCFF242WZH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF577TID ENCSR585JVS Peak bigBed 5 Heart right ventricle tissue male adult (69 years) CTCF peaks 4 3486 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/166a6baa-8d60-4e21-8d25-a5cecefafb30/ENCFF577TID.bigBed\ labelFields none\ longLabel Heart right ventricle tissue male adult (69 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR585JVS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF577TID\ type bigBed 5\ useScore 1\ visibility squish\ OlfactoryRegionAdult_CNhs12611_ctss_rev OlfactoryRegionAdult- bigWig olfactory region, adult_CNhs12611_10195-103E6_reverse 0 3486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel olfactory region, adult_CNhs12611_10195-103E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OlfactoryRegionAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OlfactoryRegionAdult_CNhs12611_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ OlfactoryRegionAdult_CNhs12611_tpm_rev OlfactoryRegionAdult- bigWig olfactory region, adult_CNhs12611_10195-103E6_reverse 1 3486 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/olfactory%20region%2c%20adult.CNhs12611.10195-103E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel olfactory region, adult_CNhs12611_10195-103E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10195-103E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OlfactoryRegionAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OlfactoryRegionAdult_CNhs12611_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10195-103E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF928RVU ENCSR495INQ Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult 42 years DNase peak 4 3487 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/fbbc9b3d-2d3f-4634-b255-9a18bd68df6c/ENCFF928RVU.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive male adult 42 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR495INQ Peak\ track wgEncodeReg4Epigenetics_ENCFF928RVU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF359FNN ENCSR585JVS Signal bigWig Heart right ventricle tissue male adult (69 years) CTCF ENCSR585JVS signal 2 3487 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/f309eabf-a0ba-48d3-8da9-645520b7dbc3/ENCFF359FNN.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (69 years) CTCF ENCSR585JVS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR585JVS Signal\ track wgEncodeReg4TfChip_ENCFF359FNN\ type bigWig\ visibility full\ OpticNerveDonor1_CNhs13449_ctss_fwd OpticNerveD1+ bigWig optic nerve, donor1_CNhs13449_10277-104E7_forward 0 3487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OpticNerveD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OpticNerveDonor1_CNhs13449_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_tpm_fwd OpticNerveD1+ bigWig optic nerve, donor1_CNhs13449_10277-104E7_forward 1 3487 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OpticNerveD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OpticNerveDonor1_CNhs13449_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF617GYK ENCSR495INQ Signal bigWig Common myeloid progenitor, CD34-positive male adult 42 years DNase signal 2 3488 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/107715bf-abcb-4586-b210-78ac067e72eb/ENCFF617GYK.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive male adult 42 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR495INQ Signal\ track wgEncodeReg4Epigenetics_ENCFF617GYK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF021LNP ENCSR585KBH Peak bigBed 5 Body of pancreas tissue female adult (51 years) CTCF peaks 4 3488 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/295824e5-899f-448a-a4b8-589fd705b0ec/ENCFF021LNP.bigBed\ labelFields none\ longLabel Body of pancreas tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR585KBH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF021LNP\ type bigBed 5\ useScore 1\ visibility squish\ OpticNerveDonor1_CNhs13449_ctss_rev OpticNerveD1- bigWig optic nerve, donor1_CNhs13449_10277-104E7_reverse 0 3488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OpticNerveD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OpticNerveDonor1_CNhs13449_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ OpticNerveDonor1_CNhs13449_tpm_rev OpticNerveD1- bigWig optic nerve, donor1_CNhs13449_10277-104E7_reverse 1 3488 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/optic%20nerve%2c%20donor1.CNhs13449.10277-104E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel optic nerve, donor1_CNhs13449_10277-104E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10277-104E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OpticNerveD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OpticNerveDonor1_CNhs13449_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10277-104E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF116EKH ENCSR496LKR Peak bigBed 5 Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak 4 3489 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/37a5dc46-5f33-4cd7-9d93-1cb7b75d106b/ENCFF116EKH.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496LKR Peak\ track wgEncodeReg4Epigenetics_ENCFF116EKH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF532WMJ ENCSR585KBH Signal bigWig Body of pancreas tissue female adult (51 years) CTCF ENCSR585KBH signal 2 3489 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/de37bde5-2d1c-4ee9-8fed-6b2a5dd35bab/ENCFF532WMJ.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (51 years) CTCF ENCSR585KBH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR585KBH Signal\ track wgEncodeReg4TfChip_ENCFF532WMJ\ type bigWig\ visibility full\ OvaryAdultPool1_CNhs10626_ctss_fwd OvaryAdultPl1+ bigWig ovary, adult, pool1_CNhs10626_10020-101D2_forward 0 3489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OvaryAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OvaryAdultPool1_CNhs10626_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_tpm_fwd OvaryAdultPl1+ bigWig ovary, adult, pool1_CNhs10626_10020-101D2_forward 1 3489 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OvaryAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track OvaryAdultPool1_CNhs10626_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF363TNK ENCSR496LKR Signal bigWig Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal 2 3490 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/61aa3f0f-6a94-4908-915c-223f4a3575f8/ENCFF363TNK.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496LKR Signal\ track wgEncodeReg4Epigenetics_ENCFF363TNK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF115FJL ENCSR586BRJ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF433 ZNF433 peaks 4 3490 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/9f23b9c6-f11a-4834-8701-4b16186f5fce/ENCFF115FJL.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF433 ZNF433 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR586BRJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF115FJL\ type bigBed 5\ useScore 1\ visibility squish\ OvaryAdultPool1_CNhs10626_ctss_rev OvaryAdultPl1- bigWig ovary, adult, pool1_CNhs10626_10020-101D2_reverse 0 3490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel OvaryAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OvaryAdultPool1_CNhs10626_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ OvaryAdultPool1_CNhs10626_tpm_rev OvaryAdultPl1- bigWig ovary, adult, pool1_CNhs10626_10020-101D2_reverse 1 3490 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/ovary%2c%20adult%2c%20pool1.CNhs10626.10020-101D2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel ovary, adult, pool1_CNhs10626_10020-101D2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10020-101D2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel OvaryAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track OvaryAdultPool1_CNhs10626_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10020-101D2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF972ATK ENCSR496PPU Peak bigBed 5 Mucosa of descending colon tissue female adult 61 years ATAC peak 4 3491 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/63353319-004e-4a27-a9a9-39479fdd7803/ENCFF972ATK.bigBed\ color 2,199,185\ longLabel Mucosa of descending colon tissue female adult 61 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496PPU Peak\ track wgEncodeReg4Epigenetics_ENCFF972ATK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF181RAS ENCSR586BRJ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF433 ZNF433 ENCSR586BRJ signal 2 3491 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/5f1ab444-f175-40ed-a316-be41e211abf1/ENCFF181RAS.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF433 ZNF433 ENCSR586BRJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR586BRJ Signal\ track wgEncodeReg4TfChip_ENCFF181RAS\ type bigWig\ visibility full\ PancreasAdultDonor1_CNhs11756_ctss_fwd PancreasAdultD1+ bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_forward 0 3491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreasAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PancreasAdultDonor1_CNhs11756_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_tpm_fwd PancreasAdultD1+ bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_forward 1 3491 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreasAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PancreasAdultDonor1_CNhs11756_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF663HOS ENCSR496PPU Signal bigWig Mucosa of descending colon tissue female adult 61 years ATAC signal 2 3492 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/893bd3bb-a616-4b1a-a6f3-e5355a716bce/ENCFF663HOS.bigWig\ color 2,199,185\ longLabel Mucosa of descending colon tissue female adult 61 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496PPU Signal\ track wgEncodeReg4Epigenetics_ENCFF663HOS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF148GGU ENCSR586DEH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 peaks 4 3492 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6fdc73cd-e934-4a2f-a0ae-6cc9b6de734b/ENCFF148GGU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR586DEH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF148GGU\ type bigBed 5\ useScore 1\ visibility squish\ PancreasAdultDonor1_CNhs11756_ctss_rev PancreasAdultD1- bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_reverse 0 3492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PancreasAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PancreasAdultDonor1_CNhs11756_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ PancreasAdultDonor1_CNhs11756_tpm_rev PancreasAdultD1- bigWig pancreas, adult, donor1_CNhs11756_10049-101G4_reverse 1 3492 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pancreas%2c%20adult%2c%20donor1.CNhs11756.10049-101G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pancreas, adult, donor1_CNhs11756_10049-101G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10049-101G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PancreasAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PancreasAdultDonor1_CNhs11756_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10049-101G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF357OOA ENCSR496PSH Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 3493 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/1724f28d-807d-4bdb-b345-9592835476fd/ENCFF357OOA.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496PSH Peak\ track wgEncodeReg4Epigenetics_ENCFF357OOA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF877CUL ENCSR586DEH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 ENCSR586DEH signal 2 3493 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/df68ce4a-0e52-499f-a069-b3f3a2b05126/ENCFF877CUL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 ENCSR586DEH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR586DEH Signal\ track wgEncodeReg4TfChip_ENCFF877CUL\ type bigWig\ visibility full\ ParacentralGyrusAdultPool1_CNhs10642_ctss_fwd ParacentralGyrusAdultPl1+ bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward 0 3493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParacentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParacentralGyrusAdultPool1_CNhs10642_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_tpm_fwd ParacentralGyrusAdultPl1+ bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward 1 3493 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParacentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParacentralGyrusAdultPool1_CNhs10642_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF294HEE ENCSR496PSH Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 3494 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/3d424c99-e3b3-4529-a96c-b99e42080ef3/ENCFF294HEE.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496PSH Signal\ track wgEncodeReg4Epigenetics_ENCFF294HEE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF932XOY ENCSR587BVQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFAP4 TFAP4 peaks 4 3494 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/bf79d15c-0806-4642-befb-c0eeaa02b6b2/ENCFF932XOY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFAP4 TFAP4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR587BVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF932XOY\ type bigBed 5\ useScore 1\ visibility squish\ ParacentralGyrusAdultPool1_CNhs10642_ctss_rev ParacentralGyrusAdultPl1- bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse 0 3494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParacentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParacentralGyrusAdultPool1_CNhs10642_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ ParacentralGyrusAdultPool1_CNhs10642_tpm_rev ParacentralGyrusAdultPl1- bigWig paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse 1 3494 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/paracentral%20gyrus%2c%20adult%2c%20pool1.CNhs10642.10035-101E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel paracentral gyrus, adult, pool1_CNhs10642_10035-101E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10035-101E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParacentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParacentralGyrusAdultPool1_CNhs10642_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10035-101E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF753PTI ENCSR496UER Signal bigWig T-cell male adult 33 years DNase signal 2 3495 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/fc794030-c6ae-4d78-a86c-eaae9635bcfc/ENCFF753PTI.bigWig\ color 6,218,147\ longLabel T-cell male adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496UER Signal\ track wgEncodeReg4Epigenetics_ENCFF753PTI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF076ZNC ENCSR587BVQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFAP4 TFAP4 ENCSR587BVQ signal 2 3495 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/0057286e-8e1a-41b1-888c-9f73b138ed08/ENCFF076ZNC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFAP4 TFAP4 ENCSR587BVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR587BVQ Signal\ track wgEncodeReg4TfChip_ENCFF076ZNC\ type bigWig\ visibility full\ ParietalCortexAdultDonor10258_CNhs14226_ctss_fwd ParietalCortexAdultD10258+ bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward 0 3495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalCortexAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalCortexAdultDonor10258_CNhs14226_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_tpm_fwd ParietalCortexAdultD10258+ bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward 1 3495 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalCortexAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalCortexAdultDonor10258_CNhs14226_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF774MSE ENCSR496UJY Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 3496 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/c57494db-c9de-4ffc-9e90-b687c5ae3804/ENCFF774MSE.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496UJY Peak\ track wgEncodeReg4Epigenetics_ENCFF774MSE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF755UXZ ENCSR587KPW Peak bigBed 5 Heart right ventricle tissue male adult (61 years) CTCF peaks 4 3496 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/60c35cfe-8c15-45f8-9a87-208283b0d1c2/ENCFF755UXZ.bigBed\ labelFields none\ longLabel Heart right ventricle tissue male adult (61 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR587KPW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF755UXZ\ type bigBed 5\ useScore 1\ visibility squish\ ParietalCortexAdultDonor10258_CNhs14226_ctss_rev ParietalCortexAdultD10258- bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse 0 3496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalCortexAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalCortexAdultDonor10258_CNhs14226_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ ParietalCortexAdultDonor10258_CNhs14226_tpm_rev ParietalCortexAdultD10258- bigWig parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse 1 3496 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20cortex%2c%20adult%2c%20donor10258.CNhs14226.10373-105G4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal cortex, adult, donor10258_CNhs14226_10373-105G4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10373-105G4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalCortexAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalCortexAdultDonor10258_CNhs14226_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10373-105G4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF476YVZ ENCSR496UJY Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 3497 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/48e7bc0c-f5f0-4b81-9635-5419c58a9feb/ENCFF476YVZ.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR496UJY Signal\ track wgEncodeReg4Epigenetics_ENCFF476YVZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF011PEP ENCSR587KPW Signal bigWig Heart right ventricle tissue male adult (61 years) CTCF ENCSR587KPW signal 2 3497 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/051e321f-17bd-4f2e-812f-fa396176a359/ENCFF011PEP.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (61 years) CTCF ENCSR587KPW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR587KPW Signal\ track wgEncodeReg4TfChip_ENCFF011PEP\ type bigWig\ visibility full\ ParietalLobeAdultDonor10196_CNhs13797_ctss_fwd ParietalLobeAdultD10196+ bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward 0 3497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10196_CNhs13797_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_tpm_fwd ParietalLobeAdultD10196+ bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward 1 3497 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10196_CNhs13797_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF710HMA ENCSR497NLU Peak bigBed 5 T-cell male adult 28 years DNase peak 4 3498 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/ed7a8465-d67a-467a-b392-09407a934be6/ENCFF710HMA.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 28 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR497NLU Peak\ track wgEncodeReg4Epigenetics_ENCFF710HMA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF506JCB ENCSR587OQL Peak bigBed 5 K562 SMARCA4 peaks 4 3498 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/a8e14927-2cb9-4191-810c-daf647f156c0/ENCFF506JCB.bigBed\ labelFields none\ longLabel K562 SMARCA4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR587OQL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF506JCB\ type bigBed 5\ useScore 1\ visibility squish\ ParietalLobeAdultDonor10196_CNhs13797_ctss_rev ParietalLobeAdultD10196- bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse 0 3498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10196_CNhs13797_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10196_CNhs13797_tpm_rev ParietalLobeAdultD10196- bigWig parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse 1 3498 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%20-%20adult%2c%20donor10196.CNhs13797.10171-103B9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe - adult, donor10196_CNhs13797_10171-103B9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10171-103B9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10196_CNhs13797_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10171-103B9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF829JMH ENCSR497NLU Signal bigWig T-cell male adult 28 years DNase signal 2 3499 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/2e4ed487-8d7b-4df3-b0a0-c54d586ebe7d/ENCFF829JMH.bigWig\ color 6,218,147\ longLabel T-cell male adult 28 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR497NLU Signal\ track wgEncodeReg4Epigenetics_ENCFF829JMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF721QMW ENCSR587OQL Signal bigWig K562 SMARCA4 ENCSR587OQL signal 2 3499 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/9cf5e56f-b6ce-4af4-9fdb-1fd6fb5a26da/ENCFF721QMW.bigWig\ color 254,75,173\ longLabel K562 SMARCA4 ENCSR587OQL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR587OQL Signal\ track wgEncodeReg4TfChip_ENCFF721QMW\ type bigWig\ visibility full\ ParietalLobeAdultDonor10252_CNhs12317_ctss_fwd ParietalLobeAdultD10252+ bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward 0 3499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10252_CNhs12317_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_tpm_fwd ParietalLobeAdultD10252+ bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward 1 3499 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultDonor10252_CNhs12317_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF677ZTZ ENCSR497URO Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 3500 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/719a1379-8f5f-4408-89f4-7626d2db1dc6/ENCFF677ZTZ.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR497URO Peak\ track wgEncodeReg4Epigenetics_ENCFF677ZTZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF136STE ENCSR588AKU Peak bigBed 5 K562 RUNX1 peaks 4 3500 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/b6fc8c2c-941e-4a82-98bf-6986ff1b6026/ENCFF136STE.bigBed\ labelFields none\ longLabel K562 RUNX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR588AKU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF136STE\ type bigBed 5\ useScore 1\ visibility squish\ ParietalLobeAdultDonor10252_CNhs12317_ctss_rev ParietalLobeAdultD10252- bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse 0 3500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10252_CNhs12317_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ ParietalLobeAdultDonor10252_CNhs12317_tpm_rev ParietalLobeAdultD10252- bigWig parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse 1 3500 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20donor10252.CNhs12317.10157-103A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, donor10252_CNhs12317_10157-103A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10157-103A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultDonor10252_CNhs12317_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10157-103A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF971OSG ENCSR497URO Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 3501 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/9461f263-f52f-4454-b233-a13d73efa38e/ENCFF971OSG.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR497URO Signal\ track wgEncodeReg4Epigenetics_ENCFF971OSG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF196VHS ENCSR588AKU Signal bigWig K562 RUNX1 ENCSR588AKU signal 2 3501 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/ffb05c21-edf6-4ffc-a488-dd945cdc98db/ENCFF196VHS.bigWig\ color 254,75,173\ longLabel K562 RUNX1 ENCSR588AKU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR588AKU Signal\ track wgEncodeReg4TfChip_ENCFF196VHS\ type bigWig\ visibility full\ ParietalLobeAdultPool1_CNhs10641_ctss_fwd ParietalLobeAdultPl1+ bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward 0 3501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultPool1_CNhs10641_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_tpm_fwd ParietalLobeAdultPl1+ bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward 1 3501 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeAdultPool1_CNhs10641_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF404PRS ENCSR498DCY Peak bigBed 5 T-cell female adult 21 years H3K27ac peak 4 3502 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/edbf2848-0183-41ee-8f44-f52b56513193/ENCFF404PRS.bigBed\ color 181,145,0\ longLabel T-cell female adult 21 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498DCY Peak\ track wgEncodeReg4Epigenetics_ENCFF404PRS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF268PFH ENCSR589SNT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFE3 TFE3 peaks 4 3502 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/7ea5a328-9d82-415e-bdfa-0f13755010ac/ENCFF268PFH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFE3 TFE3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR589SNT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF268PFH\ type bigBed 5\ useScore 1\ visibility squish\ ParietalLobeAdultPool1_CNhs10641_ctss_rev ParietalLobeAdultPl1- bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse 0 3502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultPool1_CNhs10641_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ ParietalLobeAdultPool1_CNhs10641_tpm_rev ParietalLobeAdultPl1- bigWig parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse 1 3502 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20adult%2c%20pool1.CNhs10641.10034-101E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, adult, pool1_CNhs10641_10034-101E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10034-101E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeAdultPool1_CNhs10641_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10034-101E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF787PDH ENCSR498DCY Signal bigWig T-cell female adult 21 years H3K27ac signal 2 3503 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/a52040fe-2a83-4097-83de-9fbbc63429fd/ENCFF787PDH.bigWig\ color 181,145,0\ longLabel T-cell female adult 21 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498DCY Signal\ track wgEncodeReg4Epigenetics_ENCFF787PDH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF504UQU ENCSR589SNT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFE3 TFE3 ENCSR589SNT signal 2 3503 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ec690dd4-c08b-4402-92bd-08a541c55633/ENCFF504UQU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TFE3 TFE3 ENCSR589SNT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR589SNT Signal\ track wgEncodeReg4TfChip_ENCFF504UQU\ type bigWig\ visibility full\ ParietalLobeFetalDonor1_CNhs11782_ctss_fwd ParietalLobeFetalD1+ bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward 0 3503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeFetalDonor1_CNhs11782_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_tpm_fwd ParietalLobeFetalD1+ bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward 1 3503 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeFetalDonor1_CNhs11782_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF627WER ENCSR498JAW Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak 4 3504 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/54a1b594-32ae-4d8d-a97f-63931d8974be/ENCFF627WER.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498JAW Peak\ track wgEncodeReg4Epigenetics_ENCFF627WER\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF309FOQ ENCSR590CNM Peak bigBed 5 HepG2 GATA4 peaks 4 3504 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/c62b6778-baf3-4a06-bfde-03be20551ec1/ENCFF309FOQ.bigBed\ labelFields none\ longLabel HepG2 GATA4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR590CNM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF309FOQ\ type bigBed 5\ useScore 1\ visibility squish\ ParietalLobeFetalDonor1_CNhs11782_ctss_rev ParietalLobeFetalD1- bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse 0 3504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeFetalDonor1_CNhs11782_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ ParietalLobeFetalDonor1_CNhs11782_tpm_rev ParietalLobeFetalD1- bigWig parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse 1 3504 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20fetal%2c%20donor1.CNhs11782.10072-101I9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, fetal, donor1_CNhs11782_10072-101I9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10072-101I9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeFetalDonor1_CNhs11782_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10072-101I9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF623IQZ ENCSR498JAW Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal 2 3505 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/9d2c29d9-f0e5-4841-bd73-ed8f7ea377b9/ENCFF623IQZ.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498JAW Signal\ track wgEncodeReg4Epigenetics_ENCFF623IQZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF903RED ENCSR590CNM Signal bigWig HepG2 GATA4 ENCSR590CNM signal 2 3505 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/92496879-cf84-4107-af09-8c9ad19641f1/ENCFF903RED.bigWig\ color 137,152,82\ longLabel HepG2 GATA4 ENCSR590CNM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR590CNM Signal\ track wgEncodeReg4TfChip_ENCFF903RED\ type bigWig\ visibility full\ ParietalLobeNewbornDonor10223_CNhs14074_ctss_fwd ParietalLobeNbD10223+ bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward 0 3505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeNewbornDonor10223_CNhs14074_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_tpm_fwd ParietalLobeNbD10223+ bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward 1 3505 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParietalLobeNewbornDonor10223_CNhs14074_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF444PYL ENCSR498NGT Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K27ac peak 4 3506 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/017d82bf-d25a-414a-abb4-6f63b51c4ebb/ENCFF444PYL.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498NGT Peak\ track wgEncodeReg4Epigenetics_ENCFF444PYL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF831TWO ENCSR590KEQ Peak bigBed 5 GM12878 ARNT peaks 4 3506 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ddd7dc55-3d63-448f-a678-c6386f147958/ENCFF831TWO.bigBed\ labelFields none\ longLabel GM12878 ARNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR590KEQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF831TWO\ type bigBed 5\ useScore 1\ visibility squish\ ParietalLobeNewbornDonor10223_CNhs14074_ctss_rev ParietalLobeNbD10223- bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse 0 3506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParietalLobeNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeNewbornDonor10223_CNhs14074_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ ParietalLobeNewbornDonor10223_CNhs14074_tpm_rev ParietalLobeNbD10223- bigWig parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse 1 3506 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parietal%20lobe%2c%20newborn%2c%20donor10223.CNhs14074.10356-105E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parietal lobe, newborn, donor10223_CNhs14074_10356-105E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10356-105E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParietalLobeNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParietalLobeNewbornDonor10223_CNhs14074_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10356-105E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF194KAZ ENCSR498NGT Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K27ac signal 2 3507 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/b3ebb7a4-c74f-4c72-9df4-85d7918988a1/ENCFF194KAZ.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498NGT Signal\ track wgEncodeReg4Epigenetics_ENCFF194KAZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF343TRG ENCSR590KEQ Signal bigWig GM12878 ARNT ENCSR590KEQ signal 2 3507 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/572e8954-7eec-436c-b27d-0faf66162c96/ENCFF343TRG.bigWig\ color 254,75,173\ longLabel GM12878 ARNT ENCSR590KEQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR590KEQ Signal\ track wgEncodeReg4TfChip_ENCFF343TRG\ type bigWig\ visibility full\ ParotidGlandAdult_CNhs12849_ctss_fwd ParotidGlandAdult+ bigWig parotid gland, adult_CNhs12849_10199-103F1_forward 0 3507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel parotid gland, adult_CNhs12849_10199-103F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParotidGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParotidGlandAdult_CNhs12849_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_tpm_fwd ParotidGlandAdult+ bigWig parotid gland, adult_CNhs12849_10199-103F1_forward 1 3507 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel parotid gland, adult_CNhs12849_10199-103F1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParotidGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ParotidGlandAdult_CNhs12849_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF878VPA ENCSR498RLX Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak 4 3508 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/2e46274b-dc32-4e0b-9431-b0d829317156/ENCFF878VPA.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498RLX Peak\ track wgEncodeReg4Epigenetics_ENCFF878VPA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF200RNY ENCSR590QQP Peak bigBed 5 HepG2 FUS peaks 4 3508 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/b5e6ab2a-8c6a-4a7a-b96e-b383c250a50a/ENCFF200RNY.bigBed\ labelFields none\ longLabel HepG2 FUS peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR590QQP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF200RNY\ type bigBed 5\ useScore 1\ visibility squish\ ParotidGlandAdult_CNhs12849_ctss_rev ParotidGlandAdult- bigWig parotid gland, adult_CNhs12849_10199-103F1_reverse 0 3508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel parotid gland, adult_CNhs12849_10199-103F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ParotidGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParotidGlandAdult_CNhs12849_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ ParotidGlandAdult_CNhs12849_tpm_rev ParotidGlandAdult- bigWig parotid gland, adult_CNhs12849_10199-103F1_reverse 1 3508 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/parotid%20gland%2c%20adult.CNhs12849.10199-103F1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel parotid gland, adult_CNhs12849_10199-103F1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10199-103F1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ParotidGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ParotidGlandAdult_CNhs12849_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10199-103F1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF278VYR ENCSR498RLX Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 3509 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/c633601a-9076-4a41-9bf8-e03881d70a5a/ENCFF278VYR.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498RLX Signal\ track wgEncodeReg4Epigenetics_ENCFF278VYR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF413PAJ ENCSR590QQP Signal bigWig HepG2 FUS ENCSR590QQP signal 2 3509 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/72e17030-909e-4034-8da0-00a787e990ed/ENCFF413PAJ.bigWig\ color 137,152,82\ longLabel HepG2 FUS ENCSR590QQP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR590QQP Signal\ track wgEncodeReg4TfChip_ENCFF413PAJ\ type bigWig\ visibility full\ PenisAdult_CNhs12850_ctss_fwd PenisAdult+ bigWig penis, adult_CNhs12850_10200-103F2_forward 0 3509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel penis, adult_CNhs12850_10200-103F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PenisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PenisAdult_CNhs12850_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_tpm_fwd PenisAdult+ bigWig penis, adult_CNhs12850_10200-103F2_forward 1 3509 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel penis, adult_CNhs12850_10200-103F2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PenisAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PenisAdult_CNhs12850_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF386RTS ENCSR498ZRC Peak bigBed 5 Placenta tissue female embryo 113 days H3K27ac peak 4 3510 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/0173bade-92ed-499f-ae25-e0e238b89732/ENCFF386RTS.bigBed\ color 181,145,0\ longLabel Placenta tissue female embryo 113 days H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498ZRC Peak\ track wgEncodeReg4Epigenetics_ENCFF386RTS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF465AQA ENCSR591ASD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 peaks 4 3510 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ab02ce97-071f-45c3-a99a-f1e462025980/ENCFF465AQA.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR591ASD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF465AQA\ type bigBed 5\ useScore 1\ visibility squish\ PenisAdult_CNhs12850_ctss_rev PenisAdult- bigWig penis, adult_CNhs12850_10200-103F2_reverse 0 3510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel penis, adult_CNhs12850_10200-103F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PenisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PenisAdult_CNhs12850_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ PenisAdult_CNhs12850_tpm_rev PenisAdult- bigWig penis, adult_CNhs12850_10200-103F2_reverse 1 3510 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/penis%2c%20adult.CNhs12850.10200-103F2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel penis, adult_CNhs12850_10200-103F2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10200-103F2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PenisAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PenisAdult_CNhs12850_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10200-103F2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF217EWG ENCSR498ZRC Signal bigWig Placenta tissue female embryo 113 days H3K27ac signal 2 3511 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/be47de65-0377-4d31-9e64-accd60dff1e7/ENCFF217EWG.bigWig\ color 181,145,0\ longLabel Placenta tissue female embryo 113 days H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR498ZRC Signal\ track wgEncodeReg4Epigenetics_ENCFF217EWG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF244CFZ ENCSR591ASD Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 ENCSR591ASD signal 2 3511 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b3057e01-7ec2-422c-b232-987aed9ecdd7/ENCFF244CFZ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD1 TEAD1 ENCSR591ASD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR591ASD Signal\ track wgEncodeReg4TfChip_ENCFF244CFZ\ type bigWig\ visibility full\ PinealGlandAdultDonor10196_CNhs13804_ctss_fwd PinealGlandAdultD10196+ bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward 0 3511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10196_CNhs13804_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_tpm_fwd PinealGlandAdultD10196+ bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward 1 3511 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10196_CNhs13804_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF358CGT ENCSR499ASS Peak bigBed 5 PC-3 ATAC peak 4 3512 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/21fbb86c-a8cd-443c-a43f-82f5d9e37ea7/ENCFF358CGT.bigBed\ color 2,199,185\ longLabel PC-3 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499ASS Peak\ track wgEncodeReg4Epigenetics_ENCFF358CGT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF601EMZ ENCSR591CCL Peak bigBed 5 K562 stably expressing ZNF512 ZNF512 peaks 4 3512 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/cdb7dadf-dd88-42c1-b220-7559477e70f4/ENCFF601EMZ.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF512 ZNF512 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR591CCL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF601EMZ\ type bigBed 5\ useScore 1\ visibility squish\ PinealGlandAdultDonor10196_CNhs13804_ctss_rev PinealGlandAdultD10196- bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse 0 3512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10196_CNhs13804_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10196_CNhs13804_tpm_rev PinealGlandAdultD10196- bigWig pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse 1 3512 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%20-%20adult%2c%20donor10196.CNhs13804.10179-103C8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pineal gland - adult, donor10196_CNhs13804_10179-103C8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10179-103C8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10196_CNhs13804_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10179-103C8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF124ZQJ ENCSR499ASS Signal bigWig PC-3 ATAC signal 2 3513 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/44f28eef-b631-409e-913f-9c71b886ae72/ENCFF124ZQJ.bigWig\ color 2,199,185\ longLabel PC-3 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499ASS Signal\ track wgEncodeReg4Epigenetics_ENCFF124ZQJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF995ERW ENCSR591CCL Signal bigWig K562 stably expressing ZNF512 ZNF512 ENCSR591CCL signal 2 3513 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/2eeeb901-8825-4088-834e-a9f7b33c4fc6/ENCFF995ERW.bigWig\ color 254,75,173\ longLabel K562 stably expressing ZNF512 ZNF512 ENCSR591CCL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR591CCL Signal\ track wgEncodeReg4TfChip_ENCFF995ERW\ type bigWig\ visibility full\ PinealGlandAdultDonor10252_CNhs12228_ctss_fwd PinealGlandAdultD10252+ bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward 0 3513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10252_CNhs12228_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10252_CNhs12228_tpm_fwd PinealGlandAdultD10252+ bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward 1 3513 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10252_CNhs12228_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF398EWQ ENCSR499IFY Peak bigBed 5 Placenta tissue embryo 53 days DNase peak 4 3514 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/f6ed0d53-89f6-49e5-8c6a-51a1395a6dde/ENCFF398EWQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue embryo 53 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499IFY Peak\ track wgEncodeReg4Epigenetics_ENCFF398EWQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF651PDH ENCSR593DGU Peak bigBed 5 A549 FOSL2 peaks 4 3514 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/5f86568a-619f-4297-9f1f-9208706be67b/ENCFF651PDH.bigBed\ labelFields none\ longLabel A549 FOSL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR593DGU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF651PDH\ type bigBed 5\ useScore 1\ visibility squish\ PinealGlandAdultDonor10252_CNhs12228_ctss_rev PinealGlandAdultD10252- bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse 0 3514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10252_CNhs12228_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10252_CNhs12228_tpm_rev PinealGlandAdultD10252- bigWig pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse 1 3514 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10252.CNhs12228.10160-103A7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10252_CNhs12228_10160-103A7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10160-103A7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10252_CNhs12228_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10160-103A7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF021DHC ENCSR499IFY Signal bigWig Placenta tissue embryo 53 days DNase signal 2 3515 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9f04fb47-720a-4c65-a069-5e30dbe38888/ENCFF021DHC.bigWig\ color 6,218,147\ longLabel Placenta tissue embryo 53 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499IFY Signal\ track wgEncodeReg4Epigenetics_ENCFF021DHC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF855VZS ENCSR593DGU Signal bigWig A549 FOSL2 ENCSR593DGU signal 2 3515 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/02/017f9cd5-3cef-4056-b36a-d7d9e694f317/ENCFF855VZS.bigWig\ color 130,163,45\ longLabel A549 FOSL2 ENCSR593DGU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR593DGU Signal\ track wgEncodeReg4TfChip_ENCFF855VZS\ type bigWig\ visibility full\ PinealGlandAdultDonor10258_CNhs14230_ctss_fwd PinealGlandAdultD10258+ bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward 0 3515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10258_CNhs14230_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10258_CNhs14230_tpm_fwd PinealGlandAdultD10258+ bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward 1 3515 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PinealGlandAdultDonor10258_CNhs14230_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF063NAW ENCSR499IIR Peak bigBed 5 Chorion tissue female embryo 40 weeks H3K27ac peak 4 3516 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/22acbe82-9834-45a7-bcf3-87b79f720fba/ENCFF063NAW.bigBed\ color 181,145,0\ longLabel Chorion tissue female embryo 40 weeks H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499IIR Peak\ track wgEncodeReg4Epigenetics_ENCFF063NAW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF296JLL ENCSR594BNR Peak bigBed 5 K562 HNRNPL peaks 4 3516 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/f332db6f-e1d7-426c-bfec-7c2734bfbace/ENCFF296JLL.bigBed\ labelFields none\ longLabel K562 HNRNPL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594BNR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF296JLL\ type bigBed 5\ useScore 1\ visibility squish\ PinealGlandAdultDonor10258_CNhs14230_ctss_rev PinealGlandAdultD10258- bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse 0 3516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PinealGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10258_CNhs14230_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ PinealGlandAdultDonor10258_CNhs14230_tpm_rev PinealGlandAdultD10258- bigWig pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse 1 3516 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pineal%20gland%2c%20adult%2c%20donor10258.CNhs14230.10377-105G8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pineal gland, adult, donor10258_CNhs14230_10377-105G8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10377-105G8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PinealGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PinealGlandAdultDonor10258_CNhs14230_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10377-105G8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF153ALM ENCSR499IIR Signal bigWig Chorion tissue female embryo 40 weeks H3K27ac signal 2 3517 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6878cb88-993f-412f-aa50-eeb298a309f7/ENCFF153ALM.bigWig\ color 181,145,0\ longLabel Chorion tissue female embryo 40 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499IIR Signal\ track wgEncodeReg4Epigenetics_ENCFF153ALM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF309DOU ENCSR594BNR Signal bigWig K562 HNRNPL ENCSR594BNR signal 2 3517 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/fa807a4c-fa74-43fe-beb9-68879d728b55/ENCFF309DOU.bigWig\ color 254,75,173\ longLabel K562 HNRNPL ENCSR594BNR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594BNR Signal\ track wgEncodeReg4TfChip_ENCFF309DOU\ type bigWig\ visibility full\ PituitaryGlandAdultDonor10196_CNhs13805_ctss_fwd PituitaryGlandAdultD10196+ bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward 0 3517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10196_CNhs13805_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10196_CNhs13805_tpm_fwd PituitaryGlandAdultD10196+ bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward 1 3517 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10196_CNhs13805_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF296LZG ENCSR499PZA Peak bigBed 5 Kidney tissue male embryo 105 days DNase peak 4 3518 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/f7622087-a9ec-4bdc-85ca-9fa8de12369f/ENCFF296LZG.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499PZA Peak\ track wgEncodeReg4Epigenetics_ENCFF296LZG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF787SME ENCSR594HXD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELF2 ELF2 peaks 4 3518 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/cb829c3a-c276-4d13-adeb-2f7c0b30dc34/ENCFF787SME.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELF2 ELF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594HXD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF787SME\ type bigBed 5\ useScore 1\ visibility squish\ PituitaryGlandAdultDonor10196_CNhs13805_ctss_rev PituitaryGlandAdultD10196- bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse 0 3518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10196_CNhs13805_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10196_CNhs13805_tpm_rev PituitaryGlandAdultD10196- bigWig pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse 1 3518 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%20-%20adult%2c%20donor10196.CNhs13805.10180-103C9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pituitary gland - adult, donor10196_CNhs13805_10180-103C9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10180-103C9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10196_CNhs13805_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10180-103C9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF871RSM ENCSR499PZA Signal bigWig Kidney tissue male embryo 105 days DNase signal 2 3519 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/ec142e40-9012-4b73-9a43-f59220f8b833/ENCFF871RSM.bigWig\ color 6,218,147\ longLabel Kidney tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR499PZA Signal\ track wgEncodeReg4Epigenetics_ENCFF871RSM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF848SJJ ENCSR594HXD Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELF2 ELF2 ENCSR594HXD signal 2 3519 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/0818243e-d6fe-4ad8-9fe2-7f8d4513714f/ENCFF848SJJ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ELF2 ELF2 ENCSR594HXD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594HXD Signal\ track wgEncodeReg4TfChip_ENCFF848SJJ\ type bigWig\ visibility full\ PituitaryGlandAdultDonor10252_CNhs12229_ctss_fwd PituitaryGlandAdultD10252+ bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward 0 3519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10252_CNhs12229_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_tpm_fwd PituitaryGlandAdultD10252+ bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward 1 3519 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10252_CNhs12229_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF714OGX ENCSR500GXT Peak bigBed 5 Lung tissue male child 3 years H3K4me3 peak 4 3520 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/daf6591f-9a60-43f7-984a-54509259cdb9/ENCFF714OGX.bigBed\ color 255,0,0\ longLabel Lung tissue male child 3 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR500GXT Peak\ track wgEncodeReg4Epigenetics_ENCFF714OGX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF307PRR ENCSR594NSU Peak bigBed 5 Gastrocnemius medialis tissue male adult (37 years) CTCF peaks 4 3520 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/507aa3be-defe-42f3-bef9-73b8ae8e5c26/ENCFF307PRR.bigBed\ labelFields none\ longLabel Gastrocnemius medialis tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594NSU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF307PRR\ type bigBed 5\ useScore 1\ visibility squish\ PituitaryGlandAdultDonor10252_CNhs12229_ctss_rev PituitaryGlandAdultD10252- bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse 0 3520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10252_CNhs12229_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10252_CNhs12229_tpm_rev PituitaryGlandAdultD10252- bigWig pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse 1 3520 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10252.CNhs12229.10162-103A9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10252_CNhs12229_10162-103A9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10162-103A9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10252_CNhs12229_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10162-103A9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF022TOZ ENCSR500GXT Signal bigWig Lung tissue male child 3 years H3K4me3 signal 2 3521 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/07e9c441-3788-4a60-8e2b-83facff98b05/ENCFF022TOZ.bigWig\ color 255,0,0\ longLabel Lung tissue male child 3 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR500GXT Signal\ track wgEncodeReg4Epigenetics_ENCFF022TOZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070MOG ENCSR594NSU Signal bigWig Gastrocnemius medialis tissue male adult (37 years) CTCF ENCSR594NSU signal 2 3521 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/215c937e-ae03-459c-ba3f-dbba0d5501e2/ENCFF070MOG.bigWig\ color 137,135,170\ longLabel Gastrocnemius medialis tissue male adult (37 years) CTCF ENCSR594NSU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594NSU Signal\ track wgEncodeReg4TfChip_ENCFF070MOG\ type bigWig\ visibility full\ PituitaryGlandAdultDonor10258_CNhs14231_ctss_fwd PituitaryGlandAdultD10258+ bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward 0 3521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10258_CNhs14231_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_tpm_fwd PituitaryGlandAdultD10258+ bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward 1 3521 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PituitaryGlandAdultDonor10258_CNhs14231_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF807QDW ENCSR500YBS Peak bigBed 5 Thyroid gland tissue female adult 51 years H3K27ac peak 4 3522 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/2528bcdf-f846-4cf8-922e-d9b93cb76864/ENCFF807QDW.bigBed\ color 181,145,0\ longLabel Thyroid gland tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR500YBS Peak\ track wgEncodeReg4Epigenetics_ENCFF807QDW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF436SIT ENCSR594SMP Peak bigBed 5 K562 PHF20 peaks 4 3522 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4277f1c8-c1a6-4baf-aee3-58dc2c667618/ENCFF436SIT.bigBed\ labelFields none\ longLabel K562 PHF20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594SMP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF436SIT\ type bigBed 5\ useScore 1\ visibility squish\ PituitaryGlandAdultDonor10258_CNhs14231_ctss_rev PituitaryGlandAdultD10258- bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse 0 3522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PituitaryGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10258_CNhs14231_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ PituitaryGlandAdultDonor10258_CNhs14231_tpm_rev PituitaryGlandAdultD10258- bigWig pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse 1 3522 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pituitary%20gland%2c%20adult%2c%20donor10258.CNhs14231.10378-105G9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pituitary gland, adult, donor10258_CNhs14231_10378-105G9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10378-105G9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PituitaryGlandAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PituitaryGlandAdultDonor10258_CNhs14231_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10378-105G9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF774RLX ENCSR500YBS Signal bigWig Thyroid gland tissue female adult 51 years H3K27ac signal 2 3523 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/8ab72eac-498c-43ac-9fb9-292360b9d1d6/ENCFF774RLX.bigWig\ color 181,145,0\ longLabel Thyroid gland tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR500YBS Signal\ track wgEncodeReg4Epigenetics_ENCFF774RLX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF135IPL ENCSR594SMP Signal bigWig K562 PHF20 ENCSR594SMP signal 2 3523 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/85710399-0c69-4d62-ade1-41174afdfbd6/ENCFF135IPL.bigWig\ color 254,75,173\ longLabel K562 PHF20 ENCSR594SMP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR594SMP Signal\ track wgEncodeReg4TfChip_ENCFF135IPL\ type bigWig\ visibility full\ PlacentaAdultPool1_CNhs10627_ctss_fwd PlacentaAdultPl1+ bigWig placenta, adult, pool1_CNhs10627_10021-101D3_forward 0 3523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PlacentaAdultPool1_CNhs10627_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_tpm_fwd PlacentaAdultPl1+ bigWig placenta, adult, pool1_CNhs10627_10021-101D3_forward 1 3523 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PlacentaAdultPool1_CNhs10627_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF534WXJ ENCSR501FTL Peak bigBed 5 Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 41 years H3K4me3 peak 4 3524 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e04cf6b1-5d25-4459-9567-9c82214cd4be/ENCFF534WXJ.bigBed\ color 255,0,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 41 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR501FTL Peak\ track wgEncodeReg4Epigenetics_ENCFF534WXJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF954DQD ENCSR595BPR Peak bigBed 5 Spleen tissue female adult (51 years) CTCF peaks 4 3524 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/63cc3c1c-0d9d-4182-8a8d-24dc461dec83/ENCFF954DQD.bigBed\ labelFields none\ longLabel Spleen tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR595BPR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF954DQD\ type bigBed 5\ useScore 1\ visibility squish\ PlacentaAdultPool1_CNhs10627_ctss_rev PlacentaAdultPl1- bigWig placenta, adult, pool1_CNhs10627_10021-101D3_reverse 0 3524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PlacentaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PlacentaAdultPool1_CNhs10627_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ PlacentaAdultPool1_CNhs10627_tpm_rev PlacentaAdultPl1- bigWig placenta, adult, pool1_CNhs10627_10021-101D3_reverse 1 3524 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/placenta%2c%20adult%2c%20pool1.CNhs10627.10021-101D3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel placenta, adult, pool1_CNhs10627_10021-101D3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10021-101D3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PlacentaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PlacentaAdultPool1_CNhs10627_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10021-101D3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF187IWC ENCSR501FTL Signal bigWig Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 41 years H3K4me3 signal 2 3525 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/ce2a7394-9e22-4ff9-ba2c-739dc64eedd2/ENCFF187IWC.bigWig\ color 255,0,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 41 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR501FTL Signal\ track wgEncodeReg4Epigenetics_ENCFF187IWC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF142ZKQ ENCSR595BPR Signal bigWig Spleen tissue female adult (51 years) CTCF ENCSR595BPR signal 2 3525 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/17638a55-6169-4daf-8de9-d4ece83863a1/ENCFF142ZKQ.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (51 years) CTCF ENCSR595BPR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR595BPR Signal\ track wgEncodeReg4TfChip_ENCFF142ZKQ\ type bigWig\ visibility full\ PonsAdultPool1_CNhs10640_ctss_fwd PonsAdultPl1+ bigWig pons, adult, pool1_CNhs10640_10033-101E6_forward 0 3525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PonsAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PonsAdultPool1_CNhs10640_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_tpm_fwd PonsAdultPl1+ bigWig pons, adult, pool1_CNhs10640_10033-101E6_forward 1 3525 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PonsAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PonsAdultPool1_CNhs10640_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF730JBF ENCSR501FWC Peak bigBed 5 Heart left ventricle tissue female embryo 136 days DNase peak 4 3526 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/b797e245-1b92-48cc-a6c2-9be19214e65e/ENCFF730JBF.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart left ventricle tissue female embryo 136 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR501FWC Peak\ track wgEncodeReg4Epigenetics_ENCFF730JBF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF202BSY ENCSR595FAO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF510 ZNF510 peaks 4 3526 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/82dd499b-9234-49c5-bfda-775e67257d3e/ENCFF202BSY.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF510 ZNF510 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR595FAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF202BSY\ type bigBed 5\ useScore 1\ visibility squish\ PonsAdultPool1_CNhs10640_ctss_rev PonsAdultPl1- bigWig pons, adult, pool1_CNhs10640_10033-101E6_reverse 0 3526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PonsAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PonsAdultPool1_CNhs10640_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ PonsAdultPool1_CNhs10640_tpm_rev PonsAdultPl1- bigWig pons, adult, pool1_CNhs10640_10033-101E6_reverse 1 3526 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/pons%2c%20adult%2c%20pool1.CNhs10640.10033-101E6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel pons, adult, pool1_CNhs10640_10033-101E6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10033-101E6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PonsAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PonsAdultPool1_CNhs10640_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10033-101E6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF099PUP ENCSR501FWC Signal bigWig Heart left ventricle tissue female embryo 136 days DNase signal 2 3527 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/23bafdaa-5197-448b-9ab9-46ac694d64f4/ENCFF099PUP.bigWig\ color 6,218,147\ longLabel Heart left ventricle tissue female embryo 136 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR501FWC Signal\ track wgEncodeReg4Epigenetics_ENCFF099PUP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF404CGH ENCSR595FAO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF510 ZNF510 ENCSR595FAO signal 2 3527 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/864fd4d1-bc6c-47ac-acbf-170b791b5b11/ENCFF404CGH.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF510 ZNF510 ENCSR595FAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR595FAO Signal\ track wgEncodeReg4TfChip_ENCFF404CGH\ type bigWig\ visibility full\ PostcentralGyrusAdultPool1_CNhs10638_ctss_fwd PostcentralGyrusAdultPl1+ bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward 0 3527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PostcentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PostcentralGyrusAdultPool1_CNhs10638_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_tpm_fwd PostcentralGyrusAdultPl1+ bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward 1 3527 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PostcentralGyrusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PostcentralGyrusAdultPool1_CNhs10638_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF428TYO ENCSR501JET Peak bigBed 5 Mesenchymal stem cell originated from H1 H3K4me3 peak 4 3528 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/5e97c016-c25c-4318-85b9-c39de019514b/ENCFF428TYO.bigBed\ color 255,0,0\ longLabel Mesenchymal stem cell originated from H1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR501JET Peak\ track wgEncodeReg4Epigenetics_ENCFF428TYO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF367CFI ENCSR596FEL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ RBPJ peaks 4 3528 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ac581706-b519-45d9-a0ea-24d8d2afbc60/ENCFF367CFI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ RBPJ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR596FEL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF367CFI\ type bigBed 5\ useScore 1\ visibility squish\ PostcentralGyrusAdultPool1_CNhs10638_ctss_rev PostcentralGyrusAdultPl1- bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse 0 3528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PostcentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PostcentralGyrusAdultPool1_CNhs10638_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ PostcentralGyrusAdultPool1_CNhs10638_tpm_rev PostcentralGyrusAdultPl1- bigWig postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse 1 3528 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/postcentral%20gyrus%2c%20adult%2c%20pool1.CNhs10638.10032-101E5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel postcentral gyrus, adult, pool1_CNhs10638_10032-101E5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10032-101E5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PostcentralGyrusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PostcentralGyrusAdultPool1_CNhs10638_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10032-101E5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF414WEV ENCSR501JET Signal bigWig Mesenchymal stem cell originated from H1 H3K4me3 signal 2 3529 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/521119fc-3d76-4eb5-b96e-d1122c2d0cd7/ENCFF414WEV.bigWig\ color 255,0,0\ longLabel Mesenchymal stem cell originated from H1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR501JET Signal\ track wgEncodeReg4Epigenetics_ENCFF414WEV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF092UYX ENCSR596FEL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ RBPJ ENCSR596FEL signal 2 3529 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4caff519-aa21-4947-bfea-eb5e54eff6c2/ENCFF092UYX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ RBPJ ENCSR596FEL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR596FEL Signal\ track wgEncodeReg4TfChip_ENCFF092UYX\ type bigWig\ visibility full\ ProstateAdultPool1_CNhs10628_ctss_fwd ProstateAdultPl1+ bigWig prostate, adult, pool1_CNhs10628_10022-101D4_forward 0 3529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ProstateAdultPool1_CNhs10628_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_tpm_fwd ProstateAdultPl1+ bigWig prostate, adult, pool1_CNhs10628_10022-101D4_forward 1 3529 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ProstateAdultPool1_CNhs10628_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF682CBF ENCSR502FPR Peak bigBed 5 Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 3530 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/093a0a37-02d6-4112-92ee-1e88dc171224/ENCFF682CBF.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR502FPR Peak\ track wgEncodeReg4Epigenetics_ENCFF682CBF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF662XDE ENCSR597MCV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LIN54 LIN54 peaks 4 3530 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/ac129704-d9be-4057-8833-7f59666200f8/ENCFF662XDE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LIN54 LIN54 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR597MCV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF662XDE\ type bigBed 5\ useScore 1\ visibility squish\ ProstateAdultPool1_CNhs10628_ctss_rev ProstateAdultPl1- bigWig prostate, adult, pool1_CNhs10628_10022-101D4_reverse 0 3530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ProstateAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ProstateAdultPool1_CNhs10628_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ ProstateAdultPool1_CNhs10628_tpm_rev ProstateAdultPl1- bigWig prostate, adult, pool1_CNhs10628_10022-101D4_reverse 1 3530 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/prostate%2c%20adult%2c%20pool1.CNhs10628.10022-101D4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel prostate, adult, pool1_CNhs10628_10022-101D4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10022-101D4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ProstateAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ProstateAdultPool1_CNhs10628_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10022-101D4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF337VHH ENCSR502FPR Signal bigWig Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 3531 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/01c18bba-214d-4f5c-abc2-1160f0929472/ENCFF337VHH.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR502FPR Signal\ track wgEncodeReg4Epigenetics_ENCFF337VHH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF016YRN ENCSR597MCV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LIN54 LIN54 ENCSR597MCV signal 2 3531 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/18c37bbf-fa48-4d40-a77d-45a37962edaa/ENCFF016YRN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LIN54 LIN54 ENCSR597MCV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR597MCV Signal\ track wgEncodeReg4TfChip_ENCFF016YRN\ type bigWig\ visibility full\ PutamenAdultDonor10196_CNhs12324_ctss_fwd PutamenAdultD10196+ bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_forward 0 3531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10196_CNhs12324_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_tpm_fwd PutamenAdultD10196+ bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_forward 1 3531 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10196_CNhs12324_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF426CYT ENCSR502GWQ Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase peak 4 3532 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b8095f19-0a6e-455d-a143-66b18bc6112f/ENCFF426CYT.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR502GWQ Peak\ track wgEncodeReg4Epigenetics_ENCFF426CYT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF010CPF ENCSR597QZQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF3 KIAA2018 peaks 4 3532 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/0717bbf4-ac13-47cf-83e8-d81a2579a34f/ENCFF010CPF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF3 KIAA2018 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR597QZQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF010CPF\ type bigBed 5\ useScore 1\ visibility squish\ PutamenAdultDonor10196_CNhs12324_ctss_rev PutamenAdultD10196- bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_reverse 0 3532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10196_CNhs12324_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10196_CNhs12324_tpm_rev PutamenAdultD10196- bigWig putamen, adult, donor10196_CNhs12324_10176-103C5_reverse 1 3532 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10196.CNhs12324.10176-103C5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10196_CNhs12324_10176-103C5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10176-103C5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10196_CNhs12324_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10176-103C5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF052TCE ENCSR502GWQ Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase signal 2 3533 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/3c066d67-b5bb-4579-85db-23d4a954816d/ENCFF052TCE.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-2 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR502GWQ Signal\ track wgEncodeReg4Epigenetics_ENCFF052TCE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF999QAY ENCSR597QZQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF3 KIAA2018 ENCSR597QZQ signal 2 3533 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ad9b2c92-13a1-4ed1-94a4-545c1000913e/ENCFF999QAY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens USF3 KIAA2018 ENCSR597QZQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR597QZQ Signal\ track wgEncodeReg4TfChip_ENCFF999QAY\ type bigWig\ visibility full\ PutamenAdultDonor10252_CNhs13912_ctss_fwd PutamenAdultD10252+ bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_forward 0 3533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10252_CNhs13912_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_tpm_fwd PutamenAdultD10252+ bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_forward 1 3533 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10252_CNhs13912_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF581ITV ENCSR502NDK Peak bigBed 5 Small intestine tissue female embryo 108 days DNase peak 4 3534 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/796029f0-d217-4207-8203-24604cea05df/ENCFF581ITV.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR502NDK Peak\ track wgEncodeReg4Epigenetics_ENCFF581ITV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF348ABN ENCSR597VGC Peak bigBed 5 GM12878 ETV6 peaks 4 3534 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8dc010c4-a94f-4827-ad9c-c35f7c2637cc/ENCFF348ABN.bigBed\ labelFields none\ longLabel GM12878 ETV6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR597VGC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF348ABN\ type bigBed 5\ useScore 1\ visibility squish\ PutamenAdultDonor10252_CNhs13912_ctss_rev PutamenAdultD10252- bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_reverse 0 3534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10252_CNhs13912_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10252_CNhs13912_tpm_rev PutamenAdultD10252- bigWig putamen, adult, donor10252_CNhs13912_10152-102I8_reverse 1 3534 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10252.CNhs13912.10152-102I8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10252_CNhs13912_10152-102I8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10152-102I8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10252_CNhs13912_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10152-102I8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF103DRL ENCSR502NDK Signal bigWig Small intestine tissue female embryo 108 days DNase signal 2 3535 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/db2a14a0-64d7-49e8-88a0-a0f4cfc2d0ef/ENCFF103DRL.bigWig\ color 6,218,147\ longLabel Small intestine tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR502NDK Signal\ track wgEncodeReg4Epigenetics_ENCFF103DRL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF693TRY ENCSR597VGC Signal bigWig GM12878 ETV6 ENCSR597VGC signal 2 3535 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f64b03f1-d2cf-40f5-94d6-d655452acbe9/ENCFF693TRY.bigWig\ color 254,75,173\ longLabel GM12878 ETV6 ENCSR597VGC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR597VGC Signal\ track wgEncodeReg4TfChip_ENCFF693TRY\ type bigWig\ visibility full\ PutamenAdultDonor10258TechRep1_CNhs14225_ctss_fwd PutamenAdultD10258Tr1+ bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward 0 3535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep1_CNhs14225_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_tpm_fwd PutamenAdultD10258Tr1+ bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward 1 3535 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep1_CNhs14225_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF876HIO ENCSR503BEM Peak bigBed 5 LoVo DNase peak 4 3536 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/97ed9584-88ca-4e29-8675-0efdc732a0e7/ENCFF876HIO.bigBed\ color 6,218,147\ labelFields none\ longLabel LoVo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503BEM Peak\ track wgEncodeReg4Epigenetics_ENCFF876HIO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF291NIS ENCSR598NQU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NAIF1 NAIF1 peaks 4 3536 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/72c0ffac-fa45-4bc9-b9ab-34fa6a8e2968/ENCFF291NIS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NAIF1 NAIF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR598NQU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF291NIS\ type bigBed 5\ useScore 1\ visibility squish\ PutamenAdultDonor10258TechRep1_CNhs14225_ctss_rev PutamenAdultD10258Tr1- bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse 0 3536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep1_CNhs14225_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep1_CNhs14225_tpm_rev PutamenAdultD10258Tr1- bigWig putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse 1 3536 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14225.10372-105G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep1_CNhs14225_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep1_CNhs14225_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF617KWP ENCSR503BEM Signal bigWig LoVo DNase signal 2 3537 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/eec87169-db35-4bb0-b8bf-60c17753875a/ENCFF617KWP.bigWig\ color 6,218,147\ longLabel LoVo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503BEM Signal\ track wgEncodeReg4Epigenetics_ENCFF617KWP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF240SJF ENCSR598NQU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NAIF1 NAIF1 ENCSR598NQU signal 2 3537 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/02d01e23-e89d-4b8b-a4f8-438ad9f214b0/ENCFF240SJF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NAIF1 NAIF1 ENCSR598NQU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR598NQU Signal\ track wgEncodeReg4TfChip_ENCFF240SJF\ type bigWig\ visibility full\ PutamenAdultDonor10258TechRep2_CNhs14618_ctss_fwd PutamenAdultD10258Tr2+ bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward 0 3537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep2_CNhs14618_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_tpm_fwd PutamenAdultD10258Tr2+ bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward 1 3537 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenAdultDonor10258TechRep2_CNhs14618_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF845AYA ENCSR503BKX Peak bigBed 5 T-cell male adult 42 years H3K27ac peak 4 3538 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/69471ac1-5e5f-4550-b99b-ec4a52744ace/ENCFF845AYA.bigBed\ color 181,145,0\ longLabel T-cell male adult 42 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503BKX Peak\ track wgEncodeReg4Epigenetics_ENCFF845AYA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF577IRE ENCSR598TIR Peak bigBed 5 K562 stably expressing ZNF507 ZNF507 peaks 4 3538 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0a173d25-bc50-4b41-9682-d2064d115eda/ENCFF577IRE.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF507 ZNF507 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR598TIR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF577IRE\ type bigBed 5\ useScore 1\ visibility squish\ PutamenAdultDonor10258TechRep2_CNhs14618_ctss_rev PutamenAdultD10258Tr2- bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse 0 3538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep2_CNhs14618_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ PutamenAdultDonor10258TechRep2_CNhs14618_tpm_rev PutamenAdultD10258Tr2- bigWig putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse 1 3538 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14618.10372-105G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, adult, donor10258, tech_rep2_CNhs14618_10372-105G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10372-105G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenAdultDonor10258TechRep2_CNhs14618_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10372-105G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF906URN ENCSR503BKX Signal bigWig T-cell male adult 42 years H3K27ac signal 2 3539 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/757709da-5699-480a-835f-42242de138bc/ENCFF906URN.bigWig\ color 181,145,0\ longLabel T-cell male adult 42 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503BKX Signal\ track wgEncodeReg4Epigenetics_ENCFF906URN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF565ZRH ENCSR598TIR Signal bigWig K562 stably expressing ZNF507 ZNF507 ENCSR598TIR signal 2 3539 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ac2b0c35-3f94-4fc3-9f2c-2129a5c2afe5/ENCFF565ZRH.bigWig\ color 254,75,173\ longLabel K562 stably expressing ZNF507 ZNF507 ENCSR598TIR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR598TIR Signal\ track wgEncodeReg4TfChip_ENCFF565ZRH\ type bigWig\ visibility full\ PutamenNewbornDonor10223_CNhs14083_ctss_fwd PutamenNbD10223+ bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_forward 0 3539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenNewbornDonor10223_CNhs14083_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_tpm_fwd PutamenNbD10223+ bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_forward 1 3539 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track PutamenNewbornDonor10223_CNhs14083_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF674EDQ ENCSR503EZG Peak bigBed 5 K562 treated with 1 μM Crizotinib for 48 hours ATAC peak 4 3540 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/3906a559-8e1f-4090-b36f-ac0ea8a74466/ENCFF674EDQ.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503EZG Peak\ track wgEncodeReg4Epigenetics_ENCFF674EDQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF032DND ENCSR599XKG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 peaks 4 3540 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/734f01f1-d18b-49a8-80b9-3b12c3426fef/ENCFF032DND.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR599XKG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF032DND\ type bigBed 5\ useScore 1\ visibility squish\ PutamenNewbornDonor10223_CNhs14083_ctss_rev PutamenNbD10223- bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse 0 3540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel PutamenNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenNewbornDonor10223_CNhs14083_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ PutamenNewbornDonor10223_CNhs14083_tpm_rev PutamenNbD10223- bigWig putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse 1 3540 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/putamen%2c%20newborn%2c%20donor10223.CNhs14083.10365-105F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel putamen, newborn, donor10223_CNhs14083_10365-105F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10365-105F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel PutamenNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track PutamenNewbornDonor10223_CNhs14083_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10365-105F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF692AON ENCSR503EZG Signal bigWig K562 treated with 1 μM Crizotinib for 48 hours ATAC signal 2 3541 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/f2db74cf-e51f-4bb4-8476-0fa33e220a0d/ENCFF692AON.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM Crizotinib for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503EZG Signal\ track wgEncodeReg4Epigenetics_ENCFF692AON\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF698TQW ENCSR599XKG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 ENCSR599XKG signal 2 3541 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/67d46bda-e9e0-4f52-9ce6-b5cddad876af/ENCFF698TQW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB4 HMGXB4 ENCSR599XKG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR599XKG Signal\ track wgEncodeReg4TfChip_ENCFF698TQW\ type bigWig\ visibility full\ RectumFetalDonor1_CNhs11777_ctss_fwd RectumFetalD1+ bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_forward 0 3541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RectumFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RectumFetalDonor1_CNhs11777_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_tpm_fwd RectumFetalD1+ bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_forward 1 3541 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RectumFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RectumFetalDonor1_CNhs11777_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF497HHF ENCSR503HIB Peak bigBed 5 Cerebellar cortex tissue male adult 78 years and male adult 84 years DNase peak 4 3542 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0e177168-2531-4eb5-9074-7418d385f58f/ENCFF497HHF.bigBed\ color 6,218,147\ labelFields none\ longLabel Cerebellar cortex tissue male adult 78 years and male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503HIB Peak\ track wgEncodeReg4Epigenetics_ENCFF497HHF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF653ONC ENCSR601FEB Peak bigBed 5 Spleen tissue female adult (53 years) CTCF peaks 4 3542 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/d8698f65-ec22-4171-b9e1-6f67054d4b5b/ENCFF653ONC.bigBed\ labelFields none\ longLabel Spleen tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR601FEB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF653ONC\ type bigBed 5\ useScore 1\ visibility squish\ RectumFetalDonor1_CNhs11777_ctss_rev RectumFetalD1- bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_reverse 0 3542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RectumFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RectumFetalDonor1_CNhs11777_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ RectumFetalDonor1_CNhs11777_tpm_rev RectumFetalD1- bigWig rectum, fetal, donor1_CNhs11777_10067-101I4_reverse 1 3542 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/rectum%2c%20fetal%2c%20donor1.CNhs11777.10067-101I4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel rectum, fetal, donor1_CNhs11777_10067-101I4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10067-101I4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RectumFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RectumFetalDonor1_CNhs11777_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10067-101I4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF277PYT ENCSR503HIB Signal bigWig Cerebellar cortex tissue male adult 78 years and male adult 84 years DNase signal 2 3543 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/bc1aa1fb-19a5-417f-beb8-12e5cb412793/ENCFF277PYT.bigWig\ color 6,218,147\ longLabel Cerebellar cortex tissue male adult 78 years and male adult 84 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503HIB Signal\ track wgEncodeReg4Epigenetics_ENCFF277PYT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF722HFK ENCSR601FEB Signal bigWig Spleen tissue female adult (53 years) CTCF ENCSR601FEB signal 2 3543 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/21abb1cb-7ef6-446b-a23f-fc7a2c2620f7/ENCFF722HFK.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (53 years) CTCF ENCSR601FEB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR601FEB Signal\ track wgEncodeReg4TfChip_ENCFF722HFK\ type bigWig\ visibility full\ RetinaAdultPool1_CNhs10636_ctss_fwd RetinaAdultPl1+ bigWig retina, adult, pool1_CNhs10636_10030-101E3_forward 0 3543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RetinaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RetinaAdultPool1_CNhs10636_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_tpm_fwd RetinaAdultPl1+ bigWig retina, adult, pool1_CNhs10636_10030-101E3_forward 1 3543 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RetinaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track RetinaAdultPool1_CNhs10636_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF672CVM ENCSR503HWR Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal 2 3544 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/3db5b8ab-34d5-433e-8588-af3e9156013f/ENCFF672CVM.bigWig\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503HWR Signal\ track wgEncodeReg4Epigenetics_ENCFF672CVM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF161CYU ENCSR601KKB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3 HMGXB3 peaks 4 3544 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/f35fd2b7-d0bd-447e-8101-47d8aeee99b1/ENCFF161CYU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3 HMGXB3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR601KKB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF161CYU\ type bigBed 5\ useScore 1\ visibility squish\ RetinaAdultPool1_CNhs10636_ctss_rev RetinaAdultPl1- bigWig retina, adult, pool1_CNhs10636_10030-101E3_reverse 0 3544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel RetinaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RetinaAdultPool1_CNhs10636_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ RetinaAdultPool1_CNhs10636_tpm_rev RetinaAdultPl1- bigWig retina, adult, pool1_CNhs10636_10030-101E3_reverse 1 3544 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/retina%2c%20adult%2c%20pool1.CNhs10636.10030-101E3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel retina, adult, pool1_CNhs10636_10030-101E3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10030-101E3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel RetinaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track RetinaAdultPool1_CNhs10636_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10030-101E3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF942CRH ENCSR503RWO Peak bigBed 5 Placenta tissue male embryo DNase peak 4 3545 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/64ce2025-ba41-4a19-a1fe-2da8d8998d1c/ENCFF942CRH.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503RWO Peak\ track wgEncodeReg4Epigenetics_ENCFF942CRH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF144LJV ENCSR601KKB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3 HMGXB3 ENCSR601KKB signal 2 3545 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/6ac89f26-b168-4023-9079-924a493df6ef/ENCFF144LJV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMGXB3 HMGXB3 ENCSR601KKB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR601KKB Signal\ track wgEncodeReg4TfChip_ENCFF144LJV\ type bigWig\ visibility full\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_fwd SabiosciencesXpressrefUniversalPl1+ bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward 0 3545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SabiosciencesXpressrefUniversalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_fwd SabiosciencesXpressrefUniversalPl1+ bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward 1 3545 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SabiosciencesXpressrefUniversalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF798JNG ENCSR503RWO Signal bigWig Placenta tissue male embryo DNase signal 2 3546 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/539d28ae-e981-4fea-98cb-158e18e1045a/ENCFF798JNG.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503RWO Signal\ track wgEncodeReg4Epigenetics_ENCFF798JNG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF354NRH ENCSR601OGE Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) HNF4A peaks 4 3546 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/b19d7686-e693-4574-ab50-4f08ed4de160/ENCFF354NRH.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) HNF4A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR601OGE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF354NRH\ type bigBed 5\ useScore 1\ visibility squish\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_rev SabiosciencesXpressrefUniversalPl1- bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse 0 3546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SabiosciencesXpressrefUniversalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_rev SabiosciencesXpressrefUniversalPl1- bigWig SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse 1 3546 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/SABiosciences%20XpressRef%20Human%20Universal%20Total%20RNA%2c%20pool1.CNhs10610.10002-101A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel SABiosciences XpressRef Human Universal Total RNA, pool1_CNhs10610_10002-101A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10002-101A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SabiosciencesXpressrefUniversalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SABiosciencesXpressRefHumanUniversalTotalRNAPool1_CNhs10610_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10002-101A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF586PFT ENCSR503UFM Signal bigWig Posterior cingulate gyrus tissue female adult 77 years DNase signal 2 3547 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/77d93ffc-c5f3-41a3-9d70-91cbd1deae9f/ENCFF586PFT.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 77 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503UFM Signal\ track wgEncodeReg4Epigenetics_ENCFF586PFT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF599PLJ ENCSR601OGE Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) HNF4A ENCSR601OGE signal 2 3547 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/567730a4-a3aa-489d-8a7e-d11fd24c1041/ENCFF599PLJ.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) HNF4A ENCSR601OGE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR601OGE Signal\ track wgEncodeReg4TfChip_ENCFF599PLJ\ type bigWig\ visibility full\ SalivaryGlandAdultPool1_CNhs11677_ctss_fwd SalivaryGlandAdultPl1+ bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_forward 0 3547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SalivaryGlandAdultPool1_CNhs11677_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_tpm_fwd SalivaryGlandAdultPl1+ bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_forward 1 3547 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryGlandAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SalivaryGlandAdultPool1_CNhs11677_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF008EKG ENCSR503UNA Peak bigBed 5 Nephron progenitor cell DNase peak 4 3548 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/5891ef97-588c-4d55-bcb3-5ce91579e938/ENCFF008EKG.bigBed\ color 6,218,147\ labelFields none\ longLabel Nephron progenitor cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503UNA Peak\ track wgEncodeReg4Epigenetics_ENCFF008EKG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF635XWY ENCSR603BJQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 peaks 4 3548 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/ca31831b-d887-4be5-a9eb-2c9cb0a03284/ENCFF635XWY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603BJQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF635XWY\ type bigBed 5\ useScore 1\ visibility squish\ SalivaryGlandAdultPool1_CNhs11677_ctss_rev SalivaryGlandAdultPl1- bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse 0 3548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SalivaryGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SalivaryGlandAdultPool1_CNhs11677_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ SalivaryGlandAdultPool1_CNhs11677_tpm_rev SalivaryGlandAdultPl1- bigWig salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse 1 3548 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/salivary%20gland%2c%20adult%2c%20pool1.CNhs11677.10093-102C3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel salivary gland, adult, pool1_CNhs11677_10093-102C3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10093-102C3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SalivaryGlandAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SalivaryGlandAdultPool1_CNhs11677_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10093-102C3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF148MYZ ENCSR503UNA Signal bigWig Nephron progenitor cell DNase signal 2 3549 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/3fc1ad7a-f35f-480c-8adc-5eba198607a8/ENCFF148MYZ.bigWig\ color 6,218,147\ longLabel Nephron progenitor cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR503UNA Signal\ track wgEncodeReg4Epigenetics_ENCFF148MYZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF869HHT ENCSR603BJQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 ENCSR603BJQ signal 2 3549 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/08040ad6-3391-476f-8d67-3d0c31fe1cab/ENCFF869HHT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 ENCSR603BJQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603BJQ Signal\ track wgEncodeReg4TfChip_ENCFF869HHT\ type bigWig\ visibility full\ SeminalVesicleAdult_CNhs12851_ctss_fwd SeminalVesicleAdult+ bigWig seminal vesicle, adult_CNhs12851_10201-103F3_forward 0 3549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SeminalVesicleAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SeminalVesicleAdult_CNhs12851_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_tpm_fwd SeminalVesicleAdult+ bigWig seminal vesicle, adult_CNhs12851_10201-103F3_forward 1 3549 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SeminalVesicleAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SeminalVesicleAdult_CNhs12851_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF515CPH ENCSR504KZE Peak bigBed 5 Lung tissue embryo 67 days DNase peak 4 3550 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/c1b71d3e-f6fc-45fe-8dda-b7cc1922ee21/ENCFF515CPH.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue embryo 67 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR504KZE Peak\ track wgEncodeReg4Epigenetics_ENCFF515CPH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF299ETM ENCSR603REQ Peak bigBed 5 K562 PCBP2 peaks 4 3550 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/72401ea7-ffae-4e0c-8a92-1a61281c9675/ENCFF299ETM.bigBed\ labelFields none\ longLabel K562 PCBP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603REQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF299ETM\ type bigBed 5\ useScore 1\ visibility squish\ SeminalVesicleAdult_CNhs12851_ctss_rev SeminalVesicleAdult- bigWig seminal vesicle, adult_CNhs12851_10201-103F3_reverse 0 3550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SeminalVesicleAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SeminalVesicleAdult_CNhs12851_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ SeminalVesicleAdult_CNhs12851_tpm_rev SeminalVesicleAdult- bigWig seminal vesicle, adult_CNhs12851_10201-103F3_reverse 1 3550 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/seminal%20vesicle%2c%20adult.CNhs12851.10201-103F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel seminal vesicle, adult_CNhs12851_10201-103F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10201-103F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SeminalVesicleAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SeminalVesicleAdult_CNhs12851_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10201-103F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF530FHO ENCSR504KZE Signal bigWig Lung tissue embryo 67 days DNase signal 2 3551 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/223a7347-7158-4f7e-87f7-a5097e68ece5/ENCFF530FHO.bigWig\ color 6,218,147\ longLabel Lung tissue embryo 67 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR504KZE Signal\ track wgEncodeReg4Epigenetics_ENCFF530FHO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF064TWD ENCSR603REQ Signal bigWig K562 PCBP2 ENCSR603REQ signal 2 3551 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/29e36368-21c5-49c3-bd36-5c97c7ec3e05/ENCFF064TWD.bigWig\ color 254,75,173\ longLabel K562 PCBP2 ENCSR603REQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603REQ Signal\ track wgEncodeReg4TfChip_ENCFF064TWD\ type bigWig\ visibility full\ SkeletalMuscleAdultPool1_CNhs10629_ctss_fwd SkeletalMuscleAdultPl1+ bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward 0 3551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleAdultPool1_CNhs10629_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_tpm_fwd SkeletalMuscleAdultPl1+ bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward 1 3551 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleAdultPool1_CNhs10629_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF143XVP ENCSR504OUW Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years ATAC peak 4 3552 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/8ae1884b-086f-479c-853f-c188d7f6c898/ENCFF143XVP.bigBed\ color 2,199,185\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR504OUW Peak\ track wgEncodeReg4Epigenetics_ENCFF143XVP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF475WOR ENCSR603TMB Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens RARB treated with 6 μM all-trans-retinoic acid for 48 hours RARB peaks 4 3552 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/08/20/afcc56bd-c881-4da8-bbfd-2b86bee3eafa/ENCFF475WOR.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens RARB treated with 6 μM all-trans-retinoic acid for 48 hours RARB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603TMB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF475WOR\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleAdultPool1_CNhs10629_ctss_rev SkeletalMuscleAdultPl1- bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse 0 3552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleAdultPool1_CNhs10629_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ SkeletalMuscleAdultPool1_CNhs10629_tpm_rev SkeletalMuscleAdultPl1- bigWig skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse 1 3552 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20adult%2c%20pool1.CNhs10629.10023-101D5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle, adult, pool1_CNhs10629_10023-101D5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10023-101D5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleAdultPool1_CNhs10629_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10023-101D5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF736UWT ENCSR504OUW Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years ATAC signal 2 3553 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/2c8e636d-6e2f-45eb-9b28-0f6ff40fa1ea/ENCFF736UWT.bigWig\ color 2,199,185\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR504OUW Signal\ track wgEncodeReg4Epigenetics_ENCFF736UWT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF862HAR ENCSR603TMB Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens RARB treated with 6 μM all-trans-retinoic acid for 48 hours RARB ENCSR603TMB signal 2 3553 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/427f2966-aac1-4f21-93da-0bbe91b47806/ENCFF862HAR.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens RARB treated with 6 μM all-trans-retinoic acid for 48 hours RARB ENCSR603TMB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603TMB Signal\ track wgEncodeReg4TfChip_ENCFF862HAR\ type bigWig\ visibility full\ SkeletalMuscleFetalDonor1_CNhs11776_ctss_fwd SkeletalMuscleFetalD1+ bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward 0 3553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleFetalDonor1_CNhs11776_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_tpm_fwd SkeletalMuscleFetalD1+ bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward 1 3553 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleFetalDonor1_CNhs11776_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF449FMS ENCSR505JQC Peak bigBed 5 IPS-18a H3K4me3 peak 4 3554 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f051d718-b1ad-4334-be30-dffb97b61832/ENCFF449FMS.bigBed\ color 255,0,0\ longLabel IPS-18a H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505JQC Peak\ track wgEncodeReg4Epigenetics_ENCFF449FMS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF770FHN ENCSR603XLW Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF589 ZNF589 peaks 4 3554 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/561fd3b1-09b2-4b6a-ab4a-0a762037ba8b/ENCFF770FHN.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF589 ZNF589 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603XLW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF770FHN\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleFetalDonor1_CNhs11776_ctss_rev SkeletalMuscleFetalD1- bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse 0 3554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleFetalDonor1_CNhs11776_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ SkeletalMuscleFetalDonor1_CNhs11776_tpm_rev SkeletalMuscleFetalD1- bigWig skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse 1 3554 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%2c%20fetal%2c%20donor1.CNhs11776.10066-101I3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle, fetal, donor1_CNhs11776_10066-101I3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10066-101I3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleFetalDonor1_CNhs11776_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10066-101I3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF064SWK ENCSR505JQC Signal bigWig IPS-18a H3K4me3 signal 2 3555 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f5e07d79-7c75-46e8-8b7e-7a37710f43d8/ENCFF064SWK.bigWig\ color 255,0,0\ longLabel IPS-18a H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505JQC Signal\ track wgEncodeReg4Epigenetics_ENCFF064SWK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF500IUU ENCSR603XLW Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF589 ZNF589 ENCSR603XLW signal 2 3555 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0b3531d4-3de4-4f1b-b18c-a71fea82ba50/ENCFF500IUU.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF589 ZNF589 ENCSR603XLW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR603XLW Signal\ track wgEncodeReg4TfChip_ENCFF500IUU\ type bigWig\ visibility full\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_fwd SkeletalMuscleSoleusMuscleD1+ bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward 0 3555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSoleusMuscleD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_fwd SkeletalMuscleSoleusMuscleD1+ bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward 1 3555 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSoleusMuscleD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF664RFI ENCSR505OPZ Peak bigBed 5 IPS DF 19.11 H3K27ac peak 4 3556 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/11/5c5e5bab-4810-44ad-8d15-0384404e2a34/ENCFF664RFI.bigBed\ color 181,145,0\ longLabel IPS DF 19.11 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505OPZ Peak\ track wgEncodeReg4Epigenetics_ENCFF664RFI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF532TQV ENCSR604UJV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2 IRF2 peaks 4 3556 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4a08786e-3d99-4b25-8cd7-27a79d45bf3c/ENCFF532TQV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2 IRF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604UJV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF532TQV\ type bigBed 5\ useScore 1\ visibility squish\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_rev SkeletalMuscleSoleusMuscleD1- bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse 0 3556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkeletalMuscleSoleusMuscleD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_rev SkeletalMuscleSoleusMuscleD1- bigWig skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse 1 3556 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skeletal%20muscle%20-%20soleus%20muscle%2c%20donor1.CNhs13454.10282-104F3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skeletal muscle - soleus muscle, donor1_CNhs13454_10282-104F3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10282-104F3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkeletalMuscleSoleusMuscleD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkeletalMuscleSoleusMuscleDonor1_CNhs13454_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10282-104F3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF236ILC ENCSR505OPZ Signal bigWig IPS DF 19.11 H3K27ac signal 2 3557 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/11/5036cb28-672d-4a6a-be59-c5ddcf303841/ENCFF236ILC.bigWig\ color 181,145,0\ longLabel IPS DF 19.11 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505OPZ Signal\ track wgEncodeReg4Epigenetics_ENCFF236ILC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF972GMR ENCSR604UJV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2 IRF2 ENCSR604UJV signal 2 3557 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/bf0c9bcc-3101-4a8d-b8a4-7af3b1ff378b/ENCFF972GMR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF2 IRF2 ENCSR604UJV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604UJV Signal\ track wgEncodeReg4TfChip_ENCFF972GMR\ type bigWig\ visibility full\ SkinAdultDonor1_CNhs11785_ctss_fwd SkinAdultD1+ bigWig skin, adult, donor1_CNhs11785_10074-102A2_forward 0 3557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinAdultDonor1_CNhs11785_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_tpm_fwd SkinAdultD1+ bigWig skin, adult, donor1_CNhs11785_10074-102A2_forward 1 3557 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinAdultD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinAdultDonor1_CNhs11785_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF022KFI ENCSR505RTK Peak bigBed 5 Heart right ventricle tissue female adult 46 years CTCF peak 4 3558 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7be8b94d-234d-48bd-bafb-a9eda2c33e2d/ENCFF022KFI.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart right ventricle tissue female adult 46 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505RTK Peak\ track wgEncodeReg4Epigenetics_ENCFF022KFI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF065NWR ENCSR604VAE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF8 PHF8 peaks 4 3558 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/16/95892116-8ef9-4e2f-8089-d605c4f3ae16/ENCFF065NWR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF8 PHF8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604VAE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF065NWR\ type bigBed 5\ useScore 1\ visibility squish\ SkinAdultDonor1_CNhs11785_ctss_rev SkinAdultD1- bigWig skin, adult, donor1_CNhs11785_10074-102A2_reverse 0 3558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinAdultDonor1_CNhs11785_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ SkinAdultDonor1_CNhs11785_tpm_rev SkinAdultD1- bigWig skin, adult, donor1_CNhs11785_10074-102A2_reverse 1 3558 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20adult%2c%20donor1.CNhs11785.10074-102A2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skin, adult, donor1_CNhs11785_10074-102A2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10074-102A2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinAdultD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinAdultDonor1_CNhs11785_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10074-102A2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF803TUM ENCSR505RTK Signal bigWig Heart right ventricle tissue female adult 46 years CTCF signal 2 3559 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/a3d9ee11-c05f-4fcd-83e4-f63a005e86b6/ENCFF803TUM.bigWig\ color 0,176,240\ longLabel Heart right ventricle tissue female adult 46 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505RTK Signal\ track wgEncodeReg4Epigenetics_ENCFF803TUM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF883FPT ENCSR604VAE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF8 PHF8 ENCSR604VAE signal 2 3559 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/16/e71fdd44-5573-4ada-857b-bf5ee885e9c3/ENCFF883FPT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF8 PHF8 ENCSR604VAE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604VAE Signal\ track wgEncodeReg4TfChip_ENCFF883FPT\ type bigWig\ visibility full\ SkinFetalDonor1_CNhs11774_ctss_fwd SkinFetalD1+ bigWig skin, fetal, donor1_CNhs11774_10065-101I2_forward 0 3559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinFetalDonor1_CNhs11774_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_tpm_fwd SkinFetalD1+ bigWig skin, fetal, donor1_CNhs11774_10065-101I2_forward 1 3559 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinFetalDonor1_CNhs11774_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF675AFH ENCSR505YFA Peak bigBed 5 Upper lobe of left lung tissue male adult 37 years H3K27ac peak 4 3560 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/3b609996-fb9b-455e-a580-900aaf318828/ENCFF675AFH.bigBed\ color 181,145,0\ longLabel Upper lobe of left lung tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505YFA Peak\ track wgEncodeReg4Epigenetics_ENCFF675AFH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF599UKL ENCSR604VWJ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF7 KLF7 peaks 4 3560 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/d8b615a7-4d5c-44e2-8d47-30d4d80a1a89/ENCFF599UKL.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF7 KLF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604VWJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF599UKL\ type bigBed 5\ useScore 1\ visibility squish\ SkinFetalDonor1_CNhs11774_ctss_rev SkinFetalD1- bigWig skin, fetal, donor1_CNhs11774_10065-101I2_reverse 0 3560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinFetalDonor1_CNhs11774_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ SkinFetalDonor1_CNhs11774_tpm_rev SkinFetalD1- bigWig skin, fetal, donor1_CNhs11774_10065-101I2_reverse 1 3560 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/skin%2c%20fetal%2c%20donor1.CNhs11774.10065-101I2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel skin, fetal, donor1_CNhs11774_10065-101I2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10065-101I2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinFetalDonor1_CNhs11774_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10065-101I2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF607SXR ENCSR505YFA Signal bigWig Upper lobe of left lung tissue male adult 37 years H3K27ac signal 2 3561 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/01a53473-faac-4d29-8bf1-3288cada916b/ENCFF607SXR.bigWig\ color 181,145,0\ longLabel Upper lobe of left lung tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505YFA Signal\ track wgEncodeReg4Epigenetics_ENCFF607SXR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF172ZUF ENCSR604VWJ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF7 KLF7 ENCSR604VWJ signal 2 3561 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/111103db-141c-4242-9f3b-a43d30cf6d7d/ENCFF172ZUF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF7 KLF7 ENCSR604VWJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604VWJ Signal\ track wgEncodeReg4TfChip_ENCFF172ZUF\ type bigWig\ visibility full\ SkinPalmDonor1_CNhs13458_ctss_fwd SkinPalmD1+ bigWig Skin - palm, donor1_CNhs13458_10286-104F7_forward 0 3561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinPalmD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinPalmDonor1_CNhs13458_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_tpm_fwd SkinPalmD1+ bigWig Skin - palm, donor1_CNhs13458_10286-104F7_forward 1 3561 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinPalmD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SkinPalmDonor1_CNhs13458_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF877DRR ENCSR505ZGX Peak bigBed 5 Thyroid gland tissue male adult 37 years CTCF peak 4 3562 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/8a1d6830-0c6b-4625-900b-963f21a3f379/ENCFF877DRR.bigBed\ color 0,176,240\ labelFields none\ longLabel Thyroid gland tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505ZGX Peak\ track wgEncodeReg4Epigenetics_ENCFF877DRR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF179YRV ENCSR604WXQ Peak bigBed 5 MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens MSX2 MSX2 peaks 4 3562 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/13/d132e3a3-fabe-4735-abc2-7e5bffa401c2/ENCFF179YRV.bigBed\ labelFields none\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens MSX2 MSX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604WXQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF179YRV\ type bigBed 5\ useScore 1\ visibility squish\ SkinPalmDonor1_CNhs13458_ctss_rev SkinPalmD1- bigWig Skin - palm, donor1_CNhs13458_10286-104F7_reverse 0 3562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SkinPalmD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinPalmDonor1_CNhs13458_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ SkinPalmDonor1_CNhs13458_tpm_rev SkinPalmD1- bigWig Skin - palm, donor1_CNhs13458_10286-104F7_reverse 1 3562 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Skin%20-%20palm%2c%20donor1.CNhs13458.10286-104F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Skin - palm, donor1_CNhs13458_10286-104F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10286-104F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SkinPalmD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SkinPalmDonor1_CNhs13458_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10286-104F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF874CKO ENCSR505ZGX Signal bigWig Thyroid gland tissue male adult 37 years CTCF signal 2 3563 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9a00c793-076f-452b-a290-a18522064985/ENCFF874CKO.bigWig\ color 0,176,240\ longLabel Thyroid gland tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR505ZGX Signal\ track wgEncodeReg4Epigenetics_ENCFF874CKO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF130TUH ENCSR604WXQ Signal bigWig MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens MSX2 MSX2 ENCSR604WXQ signal 2 3563 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/1f8dfcaa-9928-470e-a045-93f761259f76/ENCFF130TUH.bigWig\ color 65,171,173\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens MSX2 MSX2 ENCSR604WXQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR604WXQ Signal\ track wgEncodeReg4TfChip_ENCFF130TUH\ type bigWig\ visibility full\ SmallIntestineAdultPool1_CNhs10630_ctss_fwd SmallIntestineAdultPl1+ bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_forward 0 3563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineAdultPool1_CNhs10630_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_tpm_fwd SmallIntestineAdultPl1+ bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_forward 1 3563 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineAdultPool1_CNhs10630_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF717QCI ENCSR506QJJ Peak bigBed 5 SJCRH30 DNase peak 4 3564 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/710efd43-2bd0-4942-8453-fabe775568c9/ENCFF717QCI.bigBed\ color 6,218,147\ labelFields none\ longLabel SJCRH30 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR506QJJ Peak\ track wgEncodeReg4Epigenetics_ENCFF717QCI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF506XOB ENCSR605KVV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251 ZNF251 peaks 4 3564 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/3bf77a27-17f3-456d-a00b-e43be7915bee/ENCFF506XOB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251 ZNF251 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR605KVV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF506XOB\ type bigBed 5\ useScore 1\ visibility squish\ SmallIntestineAdultPool1_CNhs10630_ctss_rev SmallIntestineAdultPl1- bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_reverse 0 3564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineAdultPool1_CNhs10630_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ SmallIntestineAdultPool1_CNhs10630_tpm_rev SmallIntestineAdultPl1- bigWig small intestine, adult, pool1_CNhs10630_10024-101D6_reverse 1 3564 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20adult%2c%20pool1.CNhs10630.10024-101D6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small intestine, adult, pool1_CNhs10630_10024-101D6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10024-101D6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineAdultPool1_CNhs10630_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10024-101D6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF110QOO ENCSR506QJJ Signal bigWig SJCRH30 DNase signal 2 3565 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/8f7628af-188f-487f-be1b-ebc9a0d130aa/ENCFF110QOO.bigWig\ color 6,218,147\ longLabel SJCRH30 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR506QJJ Signal\ track wgEncodeReg4Epigenetics_ENCFF110QOO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF922EVI ENCSR605KVV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251 ZNF251 ENCSR605KVV signal 2 3565 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/373f7da1-8007-420f-abf4-b53c7b15ab39/ENCFF922EVI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF251 ZNF251 ENCSR605KVV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR605KVV Signal\ track wgEncodeReg4TfChip_ENCFF922EVI\ type bigWig\ visibility full\ SmallIntestineFetalDonor1_CNhs11773_ctss_fwd SmallIntestineFetalD1+ bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_forward 0 3565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineFetalDonor1_CNhs11773_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_tpm_fwd SmallIntestineFetalD1+ bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_forward 1 3565 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmallIntestineFetalDonor1_CNhs11773_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF748ZBI ENCSR507CIJ Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak 4 3566 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/fe46751d-9cea-40ae-a223-2f2cbbb2d46e/ENCFF748ZBI.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507CIJ Peak\ track wgEncodeReg4Epigenetics_ENCFF748ZBI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF513YVP ENCSR605MGM Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT1 SCRT1 peaks 4 3566 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/ea440be5-42e1-4784-ac36-a55c5e070e73/ENCFF513YVP.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT1 SCRT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR605MGM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF513YVP\ type bigBed 5\ useScore 1\ visibility squish\ SmallIntestineFetalDonor1_CNhs11773_ctss_rev SmallIntestineFetalD1- bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse 0 3566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmallIntestineFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineFetalDonor1_CNhs11773_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ SmallIntestineFetalDonor1_CNhs11773_tpm_rev SmallIntestineFetalD1- bigWig small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse 1 3566 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/small%20intestine%2c%20fetal%2c%20donor1.CNhs11773.10064-101I1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel small intestine, fetal, donor1_CNhs11773_10064-101I1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10064-101I1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmallIntestineFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmallIntestineFetalDonor1_CNhs11773_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10064-101I1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF467TIK ENCSR507CIJ Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal 2 3567 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/1caa9d21-4950-47e0-a376-7ec838cf9734/ENCFF467TIK.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507CIJ Signal\ track wgEncodeReg4Epigenetics_ENCFF467TIK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF955YBZ ENCSR605MGM Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT1 SCRT1 ENCSR605MGM signal 2 3567 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/461d6d32-452a-4cd8-9471-75a41619d87a/ENCFF955YBZ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SCRT1 SCRT1 ENCSR605MGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR605MGM Signal\ track wgEncodeReg4TfChip_ENCFF955YBZ\ type bigWig\ visibility full\ SmoothMuscleAdultPool1_CNhs11755_ctss_fwd SmoothMuscleAdultPl1+ bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward 0 3567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmoothMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmoothMuscleAdultPool1_CNhs11755_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_tpm_fwd SmoothMuscleAdultPl1+ bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward 1 3567 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmoothMuscleAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SmoothMuscleAdultPool1_CNhs11755_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF389AZP ENCSR507DQC Peak bigBed 5 Mucosa of descending colon tissue male adult 26 years DNase peak 4 3568 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/b3655f15-b46d-40a2-8a32-0df6163b972b/ENCFF389AZP.bigBed\ color 6,218,147\ labelFields none\ longLabel Mucosa of descending colon tissue male adult 26 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507DQC Peak\ track wgEncodeReg4Epigenetics_ENCFF389AZP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF045YCM ENCSR605YWG Peak bigBed 5 HepG2 TBX3 peaks 4 3568 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/73b04693-30a5-427e-ac53-78594cf006b1/ENCFF045YCM.bigBed\ labelFields none\ longLabel HepG2 TBX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR605YWG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF045YCM\ type bigBed 5\ useScore 1\ visibility squish\ SmoothMuscleAdultPool1_CNhs11755_ctss_rev SmoothMuscleAdultPl1- bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse 0 3568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SmoothMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmoothMuscleAdultPool1_CNhs11755_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ SmoothMuscleAdultPool1_CNhs11755_tpm_rev SmoothMuscleAdultPl1- bigWig smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse 1 3568 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/smooth%20muscle%2c%20adult%2c%20pool1.CNhs11755.10048-101G3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel smooth muscle, adult, pool1_CNhs11755_10048-101G3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10048-101G3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SmoothMuscleAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SmoothMuscleAdultPool1_CNhs11755_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10048-101G3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF305IPH ENCSR507DQC Signal bigWig Mucosa of descending colon tissue male adult 26 years DNase signal 2 3569 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/cac1b0a7-de0f-42d6-96cc-0b21619e7ae9/ENCFF305IPH.bigWig\ color 6,218,147\ longLabel Mucosa of descending colon tissue male adult 26 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507DQC Signal\ track wgEncodeReg4Epigenetics_ENCFF305IPH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF720BXD ENCSR605YWG Signal bigWig HepG2 TBX3 ENCSR605YWG signal 2 3569 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/5e7bd486-a2ad-4363-98e2-3819431d6bcf/ENCFF720BXD.bigWig\ color 137,152,82\ longLabel HepG2 TBX3 ENCSR605YWG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR605YWG Signal\ track wgEncodeReg4TfChip_ENCFF720BXD\ type bigWig\ visibility full\ SpinalCordAdultDonor10196_CNhs13807_ctss_fwd SpinalCordAdultD10196+ bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward 0 3569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10196_CNhs13807_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_tpm_fwd SpinalCordAdultD10196+ bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward 1 3569 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10196_CNhs13807_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF176TEA ENCSR507GFJ Peak bigBed 5 Brain tissue embryo 80 days DNase peak 4 3570 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/44570468-29c1-44e7-98f9-63345880c30b/ENCFF176TEA.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue embryo 80 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507GFJ Peak\ track wgEncodeReg4Epigenetics_ENCFF176TEA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF703IKI ENCSR606KTL Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239 ZNF239 peaks 4 3570 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/bdcb5585-56b7-44b4-9e4c-3a5990850bd9/ENCFF703IKI.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239 ZNF239 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR606KTL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF703IKI\ type bigBed 5\ useScore 1\ visibility squish\ SpinalCordAdultDonor10196_CNhs13807_ctss_rev SpinalCordAdultD10196- bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse 0 3570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10196_CNhs13807_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10196_CNhs13807_tpm_rev SpinalCordAdultD10196- bigWig spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse 1 3570 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%20-%20adult%2c%20donor10196.CNhs13807.10181-103D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord - adult, donor10196_CNhs13807_10181-103D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10181-103D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10196_CNhs13807_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10181-103D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF161HKZ ENCSR507GFJ Signal bigWig Brain tissue embryo 80 days DNase signal 2 3571 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/5ea2b3b4-7d2f-4bf8-bf10-d7e064e766c9/ENCFF161HKZ.bigWig\ color 6,218,147\ longLabel Brain tissue embryo 80 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507GFJ Signal\ track wgEncodeReg4Epigenetics_ENCFF161HKZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF888WNP ENCSR606KTL Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239 ZNF239 ENCSR606KTL signal 2 3571 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/a9a22f89-3095-4ca4-9750-c5247104a05e/ENCFF888WNP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF239 ZNF239 ENCSR606KTL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR606KTL Signal\ track wgEncodeReg4TfChip_ENCFF888WNP\ type bigWig\ visibility full\ SpinalCordAdultDonor10252_CNhs12227_ctss_fwd SpinalCordAdultD10252+ bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward 0 3571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10252_CNhs12227_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_tpm_fwd SpinalCordAdultD10252+ bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward 1 3571 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10252_CNhs12227_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF253HOM ENCSR507SRD Peak bigBed 5 Trophoblast tissue female embryo 20 weeks H3K27ac peak 4 3572 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5c3e89f1-71f2-48ac-85df-c30e5e88fbec/ENCFF253HOM.bigBed\ color 181,145,0\ longLabel Trophoblast tissue female embryo 20 weeks H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507SRD Peak\ track wgEncodeReg4Epigenetics_ENCFF253HOM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF153HEB ENCSR606LDL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1 DNMT1 peaks 4 3572 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/3bab50c7-f216-4b1d-8717-4f79ef7729f9/ENCFF153HEB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1 DNMT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR606LDL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF153HEB\ type bigBed 5\ useScore 1\ visibility squish\ SpinalCordAdultDonor10252_CNhs12227_ctss_rev SpinalCordAdultD10252- bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse 0 3572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10252_CNhs12227_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10252_CNhs12227_tpm_rev SpinalCordAdultD10252- bigWig spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse 1 3572 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10252.CNhs12227.10159-103A6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10252_CNhs12227_10159-103A6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10159-103A6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10252_CNhs12227_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10159-103A6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF881NZD ENCSR507SRD Signal bigWig Trophoblast tissue female embryo 20 weeks H3K27ac signal 2 3573 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/11d3ac69-e219-4a7a-9925-7f48fe68fae7/ENCFF881NZD.bigWig\ color 181,145,0\ longLabel Trophoblast tissue female embryo 20 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507SRD Signal\ track wgEncodeReg4Epigenetics_ENCFF881NZD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF361AJH ENCSR606LDL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1 DNMT1 ENCSR606LDL signal 2 3573 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/7e7a9a12-b094-49df-a6f7-fdaa21391b7b/ENCFF361AJH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DNMT1 DNMT1 ENCSR606LDL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR606LDL Signal\ track wgEncodeReg4TfChip_ENCFF361AJH\ type bigWig\ visibility full\ SpinalCordAdultDonor10258_CNhs14222_ctss_fwd SpinalCordAdultD10258+ bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward 0 3573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10258_CNhs14222_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_tpm_fwd SpinalCordAdultD10258+ bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward 1 3573 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordAdultDonor10258_CNhs14222_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF617BYL ENCSR507UDH Peak bigBed 5 Hepatocyte originated from H9 H3K27ac peak 4 3574 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/0bdc9a31-120f-4caf-9790-65901cf8d1e4/ENCFF617BYL.bigBed\ color 181,145,0\ longLabel Hepatocyte originated from H9 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507UDH Peak\ track wgEncodeReg4Epigenetics_ENCFF617BYL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF057QBG ENCSR606TNN Peak bigBed 5 Vagina tissue female adult (53 years) CTCF peaks 4 3574 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/9bb72edf-c3f6-4ba8-9473-677f9171611d/ENCFF057QBG.bigBed\ labelFields none\ longLabel Vagina tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR606TNN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF057QBG\ type bigBed 5\ useScore 1\ visibility squish\ SpinalCordAdultDonor10258_CNhs14222_ctss_rev SpinalCordAdultD10258- bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse 0 3574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10258_CNhs14222_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ SpinalCordAdultDonor10258_CNhs14222_tpm_rev SpinalCordAdultD10258- bigWig spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse 1 3574 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20adult%2c%20donor10258.CNhs14222.10369-105F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, adult, donor10258_CNhs14222_10369-105F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10369-105F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordAdultDonor10258_CNhs14222_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10369-105F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF347LDC ENCSR507UDH Signal bigWig Hepatocyte originated from H9 H3K27ac signal 2 3575 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/90e81fca-00f5-4f6c-89f9-58f06c9782b1/ENCFF347LDC.bigWig\ color 181,145,0\ longLabel Hepatocyte originated from H9 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507UDH Signal\ track wgEncodeReg4Epigenetics_ENCFF347LDC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF704JSE ENCSR606TNN Signal bigWig Vagina tissue female adult (53 years) CTCF ENCSR606TNN signal 2 3575 255 101 174 255 178 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a08359d1-b00e-4f71-b389-0e7b0cea1ae4/ENCFF704JSE.bigWig\ color 255,101,174\ longLabel Vagina tissue female adult (53 years) CTCF ENCSR606TNN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR606TNN Signal\ track wgEncodeReg4TfChip_ENCFF704JSE\ type bigWig\ visibility full\ SpinalCordFetalDonor1_CNhs11764_ctss_fwd SpinalCordFetalD1+ bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward 0 3575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordFetalDonor1_CNhs11764_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_tpm_fwd SpinalCordFetalD1+ bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward 1 3575 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordFetalDonor1_CNhs11764_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF993TQU ENCSR507XBY Peak bigBed 5 T-cell male adult 19 years DNase peak 4 3576 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/9cfde63f-2b98-4ae4-b8a1-9ccf05114d54/ENCFF993TQU.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 19 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507XBY Peak\ track wgEncodeReg4Epigenetics_ENCFF993TQU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF757EKU ENCSR607XFI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CTCF CTCF peaks 4 3576 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/11/2a0f288a-0c6c-412e-9b8b-d6c9bbafff1c/ENCFF757EKU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CTCF CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR607XFI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF757EKU\ type bigBed 5\ useScore 1\ visibility squish\ SpinalCordFetalDonor1_CNhs11764_ctss_rev SpinalCordFetalD1- bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse 0 3576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordFetalDonor1_CNhs11764_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ SpinalCordFetalDonor1_CNhs11764_tpm_rev SpinalCordFetalD1- bigWig spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse 1 3576 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20fetal%2c%20donor1.CNhs11764.10056-101H2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, fetal, donor1_CNhs11764_10056-101H2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10056-101H2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordFetalDonor1_CNhs11764_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10056-101H2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF571GCP ENCSR507XBY Signal bigWig T-cell male adult 19 years DNase signal 2 3577 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/85d05968-2f01-4fd2-8a46-f67def4f1d6b/ENCFF571GCP.bigWig\ color 6,218,147\ longLabel T-cell male adult 19 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR507XBY Signal\ track wgEncodeReg4Epigenetics_ENCFF571GCP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF301SGJ ENCSR607XFI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CTCF CTCF ENCSR607XFI signal 2 3577 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/11/f3f9eaff-36e3-41c4-816d-68c611e0eca1/ENCFF301SGJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CTCF CTCF ENCSR607XFI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR607XFI Signal\ track wgEncodeReg4TfChip_ENCFF301SGJ\ type bigWig\ visibility full\ SpinalCordNewbornDonor10223_CNhs14077_ctss_fwd SpinalCordNbD10223+ bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward 0 3577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordNewbornDonor10223_CNhs14077_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_tpm_fwd SpinalCordNbD10223+ bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward 1 3577 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpinalCordNewbornDonor10223_CNhs14077_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF325BIK ENCSR508FVM Peak bigBed 5 Tibial nerve tissue male adult 54 years DNase peak 4 3578 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/dc343c3e-523a-4a55-8a5b-c2e8953b058b/ENCFF325BIK.bigBed\ color 6,218,147\ labelFields none\ longLabel Tibial nerve tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR508FVM Peak\ track wgEncodeReg4Epigenetics_ENCFF325BIK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF738YZC ENCSR608HVP Peak bigBed 5 K562 stably expressing KLF13 KLF13 peaks 4 3578 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/29e9056d-224c-41f6-86e7-2d5f046f4740/ENCFF738YZC.bigBed\ labelFields none\ longLabel K562 stably expressing KLF13 KLF13 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608HVP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF738YZC\ type bigBed 5\ useScore 1\ visibility squish\ SpinalCordNewbornDonor10223_CNhs14077_ctss_rev SpinalCordNbD10223- bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse 0 3578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpinalCordNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordNewbornDonor10223_CNhs14077_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ SpinalCordNewbornDonor10223_CNhs14077_tpm_rev SpinalCordNbD10223- bigWig spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse 1 3578 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spinal%20cord%2c%20newborn%2c%20donor10223.CNhs14077.10359-105E8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spinal cord, newborn, donor10223_CNhs14077_10359-105E8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10359-105E8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpinalCordNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpinalCordNewbornDonor10223_CNhs14077_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10359-105E8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF798CZY ENCSR508FVM Signal bigWig Tibial nerve tissue male adult 54 years DNase signal 2 3579 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/d435cb9e-e66a-45d8-abeb-4d05c8fc7daf/ENCFF798CZY.bigWig\ color 6,218,147\ longLabel Tibial nerve tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR508FVM Signal\ track wgEncodeReg4Epigenetics_ENCFF798CZY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF080HIT ENCSR608HVP Signal bigWig K562 stably expressing KLF13 KLF13 ENCSR608HVP signal 2 3579 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/35b5d625-82e8-448d-9292-c0ed41fa2991/ENCFF080HIT.bigWig\ color 254,75,173\ longLabel K562 stably expressing KLF13 KLF13 ENCSR608HVP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608HVP Signal\ track wgEncodeReg4TfChip_ENCFF080HIT\ type bigWig\ visibility full\ SpleenAdultPool1_CNhs10631_ctss_fwd SpleenAdultPl1+ bigWig spleen, adult, pool1_CNhs10631_10025-101D7_forward 0 3579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenAdultPool1_CNhs10631_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_tpm_fwd SpleenAdultPl1+ bigWig spleen, adult, pool1_CNhs10631_10025-101D7_forward 1 3579 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenAdultPool1_CNhs10631_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF297RKZ ENCSR508LLL Peak bigBed 5 K562 treated with DMSO for 12 hours ATAC peak 4 3580 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/80a71a1e-3e08-44ea-bf42-d600a461b6b4/ENCFF297RKZ.bigBed\ color 2,199,185\ longLabel K562 treated with DMSO for 12 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR508LLL Peak\ track wgEncodeReg4Epigenetics_ENCFF297RKZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF653EYS ENCSR608WPS Peak bigBed 5 Transverse colon tissue male adult (37 years) CTCF peaks 4 3580 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/11091d5e-be10-4ce1-87a6-4d19e2057cfd/ENCFF653EYS.bigBed\ labelFields none\ longLabel Transverse colon tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608WPS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF653EYS\ type bigBed 5\ useScore 1\ visibility squish\ SpleenAdultPool1_CNhs10631_ctss_rev SpleenAdultPl1- bigWig spleen, adult, pool1_CNhs10631_10025-101D7_reverse 0 3580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenAdultPool1_CNhs10631_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ SpleenAdultPool1_CNhs10631_tpm_rev SpleenAdultPl1- bigWig spleen, adult, pool1_CNhs10631_10025-101D7_reverse 1 3580 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20adult%2c%20pool1.CNhs10631.10025-101D7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spleen, adult, pool1_CNhs10631_10025-101D7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10025-101D7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenAdultPool1_CNhs10631_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10025-101D7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF460SPS ENCSR508LLL Signal bigWig K562 treated with DMSO for 12 hours ATAC signal 2 3581 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/6e565069-d2af-4342-96da-8cd1e6896010/ENCFF460SPS.bigWig\ color 2,199,185\ longLabel K562 treated with DMSO for 12 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR508LLL Signal\ track wgEncodeReg4Epigenetics_ENCFF460SPS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF646EZE ENCSR608WPS Signal bigWig Transverse colon tissue male adult (37 years) CTCF ENCSR608WPS signal 2 3581 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9113ad32-4280-489d-a9d8-0fbedc48e9f4/ENCFF646EZE.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (37 years) CTCF ENCSR608WPS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608WPS Signal\ track wgEncodeReg4TfChip_ENCFF646EZE\ type bigWig\ visibility full\ SpleenFetalPool1_CNhs10651_ctss_fwd SpleenFetalPl1+ bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_forward 0 3581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenFetalPool1_CNhs10651_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_tpm_fwd SpleenFetalPl1+ bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_forward 1 3581 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SpleenFetalPool1_CNhs10651_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF772TGW ENCSR508UPW Peak bigBed 5 Esophagus squamous epithelium tissue female adult 53 years H3K4me3 peak 4 3582 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/170ce833-77c2-40c9-a4ed-22473a868c02/ENCFF772TGW.bigBed\ color 255,0,0\ longLabel Esophagus squamous epithelium tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR508UPW Peak\ track wgEncodeReg4Epigenetics_ENCFF772TGW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF325FWI ENCSR608XRC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526 ZNF526 peaks 4 3582 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/901c5ba1-993c-43f3-b538-fd3c362c2ae2/ENCFF325FWI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526 ZNF526 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608XRC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF325FWI\ type bigBed 5\ useScore 1\ visibility squish\ SpleenFetalPool1_CNhs10651_ctss_rev SpleenFetalPl1- bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_reverse 0 3582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SpleenFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenFetalPool1_CNhs10651_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ SpleenFetalPool1_CNhs10651_tpm_rev SpleenFetalPl1- bigWig spleen, fetal, pool1_CNhs10651_10044-101F8_reverse 1 3582 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/spleen%2c%20fetal%2c%20pool1.CNhs10651.10044-101F8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel spleen, fetal, pool1_CNhs10651_10044-101F8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10044-101F8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SpleenFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SpleenFetalPool1_CNhs10651_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10044-101F8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF576GES ENCSR508UPW Signal bigWig Esophagus squamous epithelium tissue female adult 53 years H3K4me3 signal 2 3583 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/a1dfb828-8f33-4544-b5a9-39ceb133a442/ENCFF576GES.bigWig\ color 255,0,0\ longLabel Esophagus squamous epithelium tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR508UPW Signal\ track wgEncodeReg4Epigenetics_ENCFF576GES\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF184XZJ ENCSR608XRC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526 ZNF526 ENCSR608XRC signal 2 3583 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/ef857ebd-a70f-4997-be1a-3f79529acae4/ENCFF184XZJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF526 ZNF526 ENCSR608XRC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608XRC Signal\ track wgEncodeReg4TfChip_ENCFF184XZJ\ type bigWig\ visibility full\ StomachFetalDonor1_CNhs11771_ctss_fwd StomachFetalD1+ bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_forward 0 3583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel StomachFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track StomachFetalDonor1_CNhs11771_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_tpm_fwd StomachFetalD1+ bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_forward 1 3583 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel StomachFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track StomachFetalDonor1_CNhs11771_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF599PNY ENCSR509JPT Peak bigBed 5 GM21367 ATAC peak 4 3584 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/6bb3ef85-321e-4d06-8a7a-db61e33450ed/ENCFF599PNY.bigBed\ color 2,199,185\ longLabel GM21367 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR509JPT Peak\ track wgEncodeReg4Epigenetics_ENCFF599PNY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF653BQJ ENCSR608XTF Peak bigBed 5 K562 RNF2 peaks 4 3584 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/5a14397a-d511-4e03-af40-7760c29e2e8f/ENCFF653BQJ.bigBed\ labelFields none\ longLabel K562 RNF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608XTF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF653BQJ\ type bigBed 5\ useScore 1\ visibility squish\ StomachFetalDonor1_CNhs11771_ctss_rev StomachFetalD1- bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_reverse 0 3584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel StomachFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track StomachFetalDonor1_CNhs11771_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ StomachFetalDonor1_CNhs11771_tpm_rev StomachFetalD1- bigWig stomach, fetal, donor1_CNhs11771_10062-101H8_reverse 1 3584 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/stomach%2c%20fetal%2c%20donor1.CNhs11771.10062-101H8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel stomach, fetal, donor1_CNhs11771_10062-101H8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10062-101H8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel StomachFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track StomachFetalDonor1_CNhs11771_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10062-101H8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF166IBK ENCSR509JPT Signal bigWig GM21367 ATAC signal 2 3585 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/db6e979f-313a-47ec-a3cf-ed134dc13122/ENCFF166IBK.bigWig\ color 2,199,185\ longLabel GM21367 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR509JPT Signal\ track wgEncodeReg4Epigenetics_ENCFF166IBK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF027LBU ENCSR608XTF Signal bigWig K562 RNF2 ENCSR608XTF signal 2 3585 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/8a84f55d-3042-49a2-b65d-41f3623edbfe/ENCFF027LBU.bigWig\ color 254,75,173\ longLabel K562 RNF2 ENCSR608XTF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR608XTF Signal\ track wgEncodeReg4TfChip_ENCFF027LBU\ type bigWig\ visibility full\ SubmaxillaryGlandAdult_CNhs12852_ctss_fwd SubmaxillaryGlandAdult+ bigWig submaxillary gland, adult_CNhs12852_10202-103F4_forward 0 3585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubmaxillaryGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubmaxillaryGlandAdult_CNhs12852_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_tpm_fwd SubmaxillaryGlandAdult+ bigWig submaxillary gland, adult_CNhs12852_10202-103F4_forward 1 3585 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubmaxillaryGlandAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubmaxillaryGlandAdult_CNhs12852_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF758FJZ ENCSR509MYW Peak bigBed 5 K562 treated with 1 μM ARS-853 for 48 hours ATAC peak 4 3586 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/e80b0b7c-115f-4e52-ac8f-e0da3e04234e/ENCFF758FJZ.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM ARS-853 for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR509MYW Peak\ track wgEncodeReg4Epigenetics_ENCFF758FJZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF727UBE ENCSR610EFT Peak bigBed 5 Body of pancreas tissue female adult (51 years) POLR2A peaks 4 3586 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/5aef4055-2372-4691-ade7-0251e9d0f166/ENCFF727UBE.bigBed\ labelFields none\ longLabel Body of pancreas tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR610EFT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF727UBE\ type bigBed 5\ useScore 1\ visibility squish\ SubmaxillaryGlandAdult_CNhs12852_ctss_rev SubmaxillaryGlandAdult- bigWig submaxillary gland, adult_CNhs12852_10202-103F4_reverse 0 3586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubmaxillaryGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubmaxillaryGlandAdult_CNhs12852_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ SubmaxillaryGlandAdult_CNhs12852_tpm_rev SubmaxillaryGlandAdult- bigWig submaxillary gland, adult_CNhs12852_10202-103F4_reverse 1 3586 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/submaxillary%20gland%2c%20adult.CNhs12852.10202-103F4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel submaxillary gland, adult_CNhs12852_10202-103F4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10202-103F4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubmaxillaryGlandAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubmaxillaryGlandAdult_CNhs12852_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10202-103F4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF861IVT ENCSR509MYW Signal bigWig K562 treated with 1 μM ARS-853 for 48 hours ATAC signal 2 3587 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/4e2abee5-0bf3-40fc-b317-decd4a85ff6e/ENCFF861IVT.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM ARS-853 for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR509MYW Signal\ track wgEncodeReg4Epigenetics_ENCFF861IVT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF849VXT ENCSR610EFT Signal bigWig Body of pancreas tissue female adult (51 years) POLR2A ENCSR610EFT signal 2 3587 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/3b16eb00-c804-4942-9f24-fe1080288738/ENCFF849VXT.bigWig\ color 175,100,41\ longLabel Body of pancreas tissue female adult (51 years) POLR2A ENCSR610EFT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR610EFT Signal\ track wgEncodeReg4TfChip_ENCFF849VXT\ type bigWig\ visibility full\ SubstantiaNigraAdultDonor10196_CNhs13803_ctss_fwd SubstantiaNigraAdultD10196+ bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward 0 3587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10196_CNhs13803_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_tpm_fwd SubstantiaNigraAdultD10196+ bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward 1 3587 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10196_CNhs13803_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF321HNK ENCSR510CNG Peak bigBed 5 Astrocyte H3K27ac peak 4 3588 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/3096989e-7cef-4c1c-a55f-ad26a2e313db/ENCFF321HNK.bigBed\ color 181,145,0\ longLabel Astrocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510CNG Peak\ track wgEncodeReg4Epigenetics_ENCFF321HNK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF265AZL ENCSR610UDC Peak bigBed 5 Middle frontal area 46 tissue female adult (87 years) CTCF peaks 4 3588 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6a0f9660-b0ea-4ab9-afc7-3688011e1bbb/ENCFF265AZL.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (87 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR610UDC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF265AZL\ type bigBed 5\ useScore 1\ visibility squish\ SubstantiaNigraAdultDonor10196_CNhs13803_ctss_rev SubstantiaNigraAdultD10196- bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse 0 3588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10196_CNhs13803_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10196_CNhs13803_tpm_rev SubstantiaNigraAdultD10196- bigWig substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse 1 3588 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%20-%20adult%2c%20donor10196.CNhs13803.10178-103C7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra - adult, donor10196_CNhs13803_10178-103C7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10178-103C7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10196_CNhs13803_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10178-103C7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF751GCN ENCSR510CNG Signal bigWig Astrocyte H3K27ac signal 2 3589 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/f339f9b4-9183-43ed-8587-b3f731076a69/ENCFF751GCN.bigWig\ color 181,145,0\ longLabel Astrocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510CNG Signal\ track wgEncodeReg4Epigenetics_ENCFF751GCN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF729DUW ENCSR610UDC Signal bigWig Middle frontal area 46 tissue female adult (87 years) CTCF ENCSR610UDC signal 2 3589 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/642e9c28-67b5-40c9-9229-08562b48d47c/ENCFF729DUW.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (87 years) CTCF ENCSR610UDC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR610UDC Signal\ track wgEncodeReg4TfChip_ENCFF729DUW\ type bigWig\ visibility full\ SubstantiaNigraAdultDonor10252_CNhs12318_ctss_fwd SubstantiaNigraAdultD10252+ bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward 0 3589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10252_CNhs12318_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_tpm_fwd SubstantiaNigraAdultD10252+ bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward 1 3589 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10252_CNhs12318_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF197QAX ENCSR510GRY Peak bigBed 5 Posterior cingulate gyrus tissue male adult 83 years DNase peak 4 3590 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/aa4d07f1-40bd-4ad6-a7c6-b3118d068add/ENCFF197QAX.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue male adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510GRY Peak\ track wgEncodeReg4Epigenetics_ENCFF197QAX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF832KWE ENCSR611HGB Peak bigBed 5 GM23338 CTCF peaks 4 3590 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/fd2df27c-dcea-41a0-9aac-2ec128b61e95/ENCFF832KWE.bigBed\ labelFields none\ longLabel GM23338 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR611HGB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF832KWE\ type bigBed 5\ useScore 1\ visibility squish\ SubstantiaNigraAdultDonor10252_CNhs12318_ctss_rev SubstantiaNigraAdultD10252- bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse 0 3590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10252_CNhs12318_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10252_CNhs12318_tpm_rev SubstantiaNigraAdultD10252- bigWig substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse 1 3590 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10252.CNhs12318.10158-103A5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10252_CNhs12318_10158-103A5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10158-103A5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10252_CNhs12318_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10158-103A5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF459TMW ENCSR510GRY Signal bigWig Posterior cingulate gyrus tissue male adult 83 years DNase signal 2 3591 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/9e56ad69-8816-4c4b-88e9-ff36f1d3a16b/ENCFF459TMW.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue male adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510GRY Signal\ track wgEncodeReg4Epigenetics_ENCFF459TMW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF553NAP ENCSR611HGB Signal bigWig GM23338 CTCF ENCSR611HGB signal 2 3591 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/00ca6889-ce96-45c4-bd68-2f459089dfd1/ENCFF553NAP.bigWig\ color 127,133,209\ longLabel GM23338 CTCF ENCSR611HGB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR611HGB Signal\ track wgEncodeReg4TfChip_ENCFF553NAP\ type bigWig\ visibility full\ SubstantiaNigraAdultDonor10258_CNhs14224_ctss_fwd SubstantiaNigraAdultD10258+ bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward 0 3591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10258_CNhs14224_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_tpm_fwd SubstantiaNigraAdultD10258+ bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward 1 3591 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10258+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraAdultDonor10258_CNhs14224_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF994BEK ENCSR510ITB Peak bigBed 5 Left lung tissue male embryo 91 days DNase peak 4 3592 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/ce749c6d-0240-4c40-b4f9-cac9c888c2a4/ENCFF994BEK.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510ITB Peak\ track wgEncodeReg4Epigenetics_ENCFF994BEK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF412RKA ENCSR611JJS Peak bigBed 5 A673 CTCF peaks 4 3592 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2017/10/20/a595ee41-07ce-456e-bf82-3b0c7d11dfb5/ENCFF412RKA.bigBed\ labelFields none\ longLabel A673 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR611JJS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF412RKA\ type bigBed 5\ useScore 1\ visibility squish\ SubstantiaNigraAdultDonor10258_CNhs14224_ctss_rev SubstantiaNigraAdultD10258- bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse 0 3592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10258_CNhs14224_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ SubstantiaNigraAdultDonor10258_CNhs14224_tpm_rev SubstantiaNigraAdultD10258- bigWig substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse 1 3592 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20adult%2c%20donor10258.CNhs14224.10371-105G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, adult, donor10258_CNhs14224_10371-105G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10371-105G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraAdultD10258-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraAdultDonor10258_CNhs14224_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10371-105G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF100GJM ENCSR510ITB Signal bigWig Left lung tissue male embryo 91 days DNase signal 2 3593 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/e89b5100-dc13-483a-b79c-297a386e4b80/ENCFF100GJM.bigWig\ color 6,218,147\ longLabel Left lung tissue male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510ITB Signal\ track wgEncodeReg4Epigenetics_ENCFF100GJM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070LLG ENCSR611JJS Signal bigWig A673 CTCF ENCSR611JJS signal 2 3593 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/95db783a-512d-4a21-95b4-28d4a824b466/ENCFF070LLG.bigWig\ color 137,135,170\ longLabel A673 CTCF ENCSR611JJS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR611JJS Signal\ track wgEncodeReg4TfChip_ENCFF070LLG\ type bigWig\ visibility full\ SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_fwd SubstantiaNigraNbD10223+ bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward 0 3593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_fwd SubstantiaNigraNbD10223+ bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward 1 3593 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF067TCS ENCSR510NXV Peak bigBed 5 Gastroesophageal sphincter tissue female adult 53 years H3K4me3 peak 4 3594 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/25a61d30-4e45-4efb-b74f-442fb1fe72de/ENCFF067TCS.bigBed\ color 255,0,0\ longLabel Gastroesophageal sphincter tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510NXV Peak\ track wgEncodeReg4Epigenetics_ENCFF067TCS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF787QBT ENCSR611WZO Peak bigBed 5 HeLa-S3 SREBF2 peaks 4 3594 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8df1d8cd-9310-49b1-8f59-4ad9cf24e2be/ENCFF787QBT.bigBed\ labelFields none\ longLabel HeLa-S3 SREBF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR611WZO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF787QBT\ type bigBed 5\ useScore 1\ visibility squish\ SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_rev SubstantiaNigraNbD10223- bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse 0 3594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel SubstantiaNigraNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraNewbornDonor10223_CNhs14076_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_rev SubstantiaNigraNbD10223- bigWig substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse 1 3594 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/substantia%20nigra%2c%20newborn%2c%20donor10223.CNhs14076.10358-105E7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel substantia nigra, newborn, donor10223_CNhs14076_10358-105E7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10358-105E7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel SubstantiaNigraNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track SubstantiaNigraNewbornDonor10223_CNhs14076_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10358-105E7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF216VFC ENCSR510NXV Signal bigWig Gastroesophageal sphincter tissue female adult 53 years H3K4me3 signal 2 3595 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/3f7861a6-0855-476b-9d75-d4352073f78e/ENCFF216VFC.bigWig\ color 255,0,0\ longLabel Gastroesophageal sphincter tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510NXV Signal\ track wgEncodeReg4Epigenetics_ENCFF216VFC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF903PBY ENCSR611WZO Signal bigWig HeLa-S3 SREBF2 ENCSR611WZO signal 2 3595 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/81e601a8-1110-4c33-910c-a8f6007c4403/ENCFF903PBY.bigWig\ color 186,111,165\ longLabel HeLa-S3 SREBF2 ENCSR611WZO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR611WZO Signal\ track wgEncodeReg4TfChip_ENCFF903PBY\ type bigWig\ visibility full\ TemporalLobeAdultPool1_CNhs10637_ctss_fwd TemporalLobeAdultPl1+ bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward 0 3595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeAdultPool1_CNhs10637_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_tpm_fwd TemporalLobeAdultPl1+ bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward 1 3595 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeAdultPool1_CNhs10637_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF212FTA ENCSR510RPC Peak bigBed 5 Left lung tissue female child 16 years H3K27ac peak 4 3596 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/2f0ef8da-ebc1-44f0-a46b-d621255f901f/ENCFF212FTA.bigBed\ color 181,145,0\ longLabel Left lung tissue female child 16 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510RPC Peak\ track wgEncodeReg4Epigenetics_ENCFF212FTA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF609JBM ENCSR612XVQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF20 PHF20 peaks 4 3596 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/b25684cb-b9e1-4f49-8237-bf598939dd11/ENCFF609JBM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF20 PHF20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR612XVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF609JBM\ type bigBed 5\ useScore 1\ visibility squish\ TemporalLobeAdultPool1_CNhs10637_ctss_rev TemporalLobeAdultPl1- bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse 0 3596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeAdultPool1_CNhs10637_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ TemporalLobeAdultPool1_CNhs10637_tpm_rev TemporalLobeAdultPl1- bigWig temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse 1 3596 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20adult%2c%20pool1.CNhs10637.10031-101E4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, adult, pool1_CNhs10637_10031-101E4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10031-101E4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeAdultPool1_CNhs10637_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10031-101E4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF397ZHX ENCSR510RPC Signal bigWig Left lung tissue female child 16 years H3K27ac signal 2 3597 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/25/55858835-a8a1-4b76-b7ed-225f756049b6/ENCFF397ZHX.bigWig\ color 181,145,0\ longLabel Left lung tissue female child 16 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510RPC Signal\ track wgEncodeReg4Epigenetics_ENCFF397ZHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF363CKO ENCSR612XVQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF20 PHF20 ENCSR612XVQ signal 2 3597 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/6638eef8-7991-4548-ab6b-f84095318471/ENCFF363CKO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PHF20 PHF20 ENCSR612XVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR612XVQ Signal\ track wgEncodeReg4TfChip_ENCFF363CKO\ type bigWig\ visibility full\ TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_fwd TemporalLobeFetalD1Tr1+ bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward 0 3597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_fwd TemporalLobeFetalD1Tr1+ bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward 1 3597 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF117ZMF ENCSR510VXV Peak bigBed 5 HFFc6 H3K27ac peak 4 3598 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/30/f851ff65-1dc4-4d90-91d1-888575383c5d/ENCFF117ZMF.bigBed\ color 181,145,0\ longLabel HFFc6 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510VXV Peak\ track wgEncodeReg4Epigenetics_ENCFF117ZMF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF451RAF ENCSR613NUC Peak bigBed 5 K562 ARNT peaks 4 3598 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/28b1c23b-6daa-4c22-a515-1bb46eba36d0/ENCFF451RAF.bigBed\ labelFields none\ longLabel K562 ARNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR613NUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF451RAF\ type bigBed 5\ useScore 1\ visibility squish\ TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_rev TemporalLobeFetalD1Tr1- bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse 0 3598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_rev TemporalLobeFetalD1Tr1- bigWig temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse 1 3598 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep1.CNhs11772.10063-101H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep1_CNhs11772_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep1_CNhs11772_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF426TLD ENCSR510VXV Signal bigWig HFFc6 H3K27ac signal 2 3599 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/00cd6e3f-d327-4b60-9e65-661d02a0690d/ENCFF426TLD.bigWig\ color 181,145,0\ longLabel HFFc6 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR510VXV Signal\ track wgEncodeReg4Epigenetics_ENCFF426TLD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF194PVJ ENCSR613NUC Signal bigWig K562 ARNT ENCSR613NUC signal 2 3599 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/b9982f49-5967-4c7e-a573-150f5257d12f/ENCFF194PVJ.bigWig\ color 254,75,173\ longLabel K562 ARNT ENCSR613NUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR613NUC Signal\ track wgEncodeReg4TfChip_ENCFF194PVJ\ type bigWig\ visibility full\ TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_fwd TemporalLobeFetalD1Tr2+ bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward 0 3599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_fwd TemporalLobeFetalD1Tr2+ bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward 1 3599 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF529HAV ENCSR511GQA Peak bigBed 5 Stomach tissue female embryo 108 days DNase peak 4 3600 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/eb3ef6c1-bfdb-40f9-bc87-3ec56b81635f/ENCFF529HAV.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR511GQA Peak\ track wgEncodeReg4Epigenetics_ENCFF529HAV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF388NNO ENCSR613RDS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619 ZNF619 peaks 4 3600 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/bf4825fe-af16-4a18-b8c8-b2400bb5067f/ENCFF388NNO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619 ZNF619 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR613RDS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF388NNO\ type bigBed 5\ useScore 1\ visibility squish\ TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_rev TemporalLobeFetalD1Tr2- bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse 0 3600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TemporalLobeFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_rev TemporalLobeFetalD1Tr2- bigWig temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse 1 3600 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/temporal%20lobe%2c%20fetal%2c%20donor1%2c%20tech_rep2.CNhs12996.10063-101H9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel temporal lobe, fetal, donor1, tech_rep2_CNhs12996_10063-101H9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10063-101H9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TemporalLobeFetalD1Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TemporalLobeFetalDonor1TechRep2_CNhs12996_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10063-101H9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF803YVS ENCSR511GQA Signal bigWig Stomach tissue female embryo 108 days DNase signal 2 3601 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0dd0245a-713d-4161-a683-4732206a8bfb/ENCFF803YVS.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR511GQA Signal\ track wgEncodeReg4Epigenetics_ENCFF803YVS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF217MUV ENCSR613RDS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619 ZNF619 ENCSR613RDS signal 2 3601 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/3f65fab2-1abf-4bcf-8338-c759ce05847f/ENCFF217MUV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF619 ZNF619 ENCSR613RDS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR613RDS Signal\ track wgEncodeReg4TfChip_ENCFF217MUV\ type bigWig\ visibility full\ TestisAdultPool1_CNhs10632_ctss_fwd TestisAdultPl1+ bigWig testis, adult, pool1_CNhs10632_10026-101D8_forward 0 3601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool1_CNhs10632_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_tpm_fwd TestisAdultPl1+ bigWig testis, adult, pool1_CNhs10632_10026-101D8_forward 1 3601 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool1_CNhs10632_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF786AQQ ENCSR511PFY Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase peak 4 3602 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/a831c21c-65d8-4f35-ba04-1a4153515fac/ENCFF786AQQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR511PFY Peak\ track wgEncodeReg4Epigenetics_ENCFF786AQQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF026NYX ENCSR614HHL Peak bigBed 5 Vagina tissue female adult (51 years) CTCF peaks 4 3602 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/c0994cf6-0110-4cc3-bfa8-47f01332d8dc/ENCFF026NYX.bigBed\ labelFields none\ longLabel Vagina tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR614HHL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF026NYX\ type bigBed 5\ useScore 1\ visibility squish\ TestisAdultPool1_CNhs10632_ctss_rev TestisAdultPl1- bigWig testis, adult, pool1_CNhs10632_10026-101D8_reverse 0 3602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool1_CNhs10632_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ TestisAdultPool1_CNhs10632_tpm_rev TestisAdultPl1- bigWig testis, adult, pool1_CNhs10632_10026-101D8_reverse 1 3602 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool1.CNhs10632.10026-101D8.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testis, adult, pool1_CNhs10632_10026-101D8_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10026-101D8 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool1_CNhs10632_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10026-101D8\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF687KZW ENCSR511PFY Signal bigWig Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase signal 2 3603 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/7993cae3-150f-478b-bcf6-bf027a87abef/ENCFF687KZW.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue male adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR511PFY Signal\ track wgEncodeReg4Epigenetics_ENCFF687KZW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF820JGD ENCSR614HHL Signal bigWig Vagina tissue female adult (51 years) CTCF ENCSR614HHL signal 2 3603 255 101 174 255 178 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/7687cd61-e57c-4390-80eb-1883287c3054/ENCFF820JGD.bigWig\ color 255,101,174\ longLabel Vagina tissue female adult (51 years) CTCF ENCSR614HHL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR614HHL Signal\ track wgEncodeReg4TfChip_ENCFF820JGD\ type bigWig\ visibility full\ TestisAdultPool2_CNhs12998_ctss_fwd TestisAdultPl2+ bigWig testis, adult, pool2_CNhs12998_10096-102C6_forward 0 3603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool2_CNhs12998_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_tpm_fwd TestisAdultPl2+ bigWig testis, adult, pool2_CNhs12998_10096-102C6_forward 1 3603 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TestisAdultPool2_CNhs12998_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF714GKQ ENCSR512CWR Peak bigBed 5 Umbilical cord tissue embryo 59 days and male embryo 76 days DNase peak 4 3604 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9bf5a8cf-a460-454f-b838-556972736e6e/ENCFF714GKQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Umbilical cord tissue embryo 59 days and male embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR512CWR Peak\ track wgEncodeReg4Epigenetics_ENCFF714GKQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF820VKU ENCSR616OSG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF11 KLF11 peaks 4 3604 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/437ae109-479a-4832-a453-4c1f8e997dd3/ENCFF820VKU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF11 KLF11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR616OSG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF820VKU\ type bigBed 5\ useScore 1\ visibility squish\ TestisAdultPool2_CNhs12998_ctss_rev TestisAdultPl2- bigWig testis, adult, pool2_CNhs12998_10096-102C6_reverse 0 3604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TestisAdultPl2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool2_CNhs12998_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ TestisAdultPool2_CNhs12998_tpm_rev TestisAdultPl2- bigWig testis, adult, pool2_CNhs12998_10096-102C6_reverse 1 3604 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/testis%2c%20adult%2c%20pool2.CNhs12998.10096-102C6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel testis, adult, pool2_CNhs12998_10096-102C6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10096-102C6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TestisAdultPl2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TestisAdultPool2_CNhs12998_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10096-102C6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF588RPE ENCSR512CWR Signal bigWig Umbilical cord tissue embryo 59 days and male embryo 76 days DNase signal 2 3605 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4c58548c-4d41-4c41-bbf8-9eaee691ed1c/ENCFF588RPE.bigWig\ color 6,218,147\ longLabel Umbilical cord tissue embryo 59 days and male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR512CWR Signal\ track wgEncodeReg4Epigenetics_ENCFF588RPE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF908OBY ENCSR616OSG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF11 KLF11 ENCSR616OSG signal 2 3605 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d30ba178-13fa-45a9-9fd4-24a5d2a5c717/ENCFF908OBY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF11 KLF11 ENCSR616OSG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR616OSG Signal\ track wgEncodeReg4TfChip_ENCFF908OBY\ type bigWig\ visibility full\ ThalamusAdultDonor10196_CNhs13794_ctss_fwd ThalamusAdultD10196+ bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_forward 0 3605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10196_CNhs13794_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_tpm_fwd ThalamusAdultD10196+ bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_forward 1 3605 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10196+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10196_CNhs13794_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF027TRK ENCSR512FHU Peak bigBed 5 GM19023 ATAC peak 4 3606 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/849b1d38-6273-4888-b254-c71fd0c2104c/ENCFF027TRK.bigBed\ color 2,199,185\ longLabel GM19023 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR512FHU Peak\ track wgEncodeReg4Epigenetics_ENCFF027TRK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF512UDH ENCSR616WEG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HBP1 HBP1 peaks 4 3606 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/7dd5ca7a-c89d-4cea-90bb-7e5f31eb79f1/ENCFF512UDH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HBP1 HBP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR616WEG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF512UDH\ type bigBed 5\ useScore 1\ visibility squish\ ThalamusAdultDonor10196_CNhs13794_ctss_rev ThalamusAdultD10196- bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse 0 3606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10196_CNhs13794_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10196_CNhs13794_tpm_rev ThalamusAdultD10196- bigWig thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse 1 3606 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%20-%20adult%2c%20donor10196.CNhs13794.10168-103B6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus - adult, donor10196_CNhs13794_10168-103B6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10168-103B6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10196-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10196_CNhs13794_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10168-103B6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF816XRV ENCSR512FHU Signal bigWig GM19023 ATAC signal 2 3607 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/e85ae3e2-e2cd-4405-ac6d-664e744797c3/ENCFF816XRV.bigWig\ color 2,199,185\ longLabel GM19023 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR512FHU Signal\ track wgEncodeReg4Epigenetics_ENCFF816XRV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF422AGB ENCSR616WEG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HBP1 HBP1 ENCSR616WEG signal 2 3607 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1b22854f-96ae-4eb5-b9e7-10711a950349/ENCFF422AGB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HBP1 HBP1 ENCSR616WEG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR616WEG Signal\ track wgEncodeReg4TfChip_ENCFF422AGB\ type bigWig\ visibility full\ ThalamusAdultDonor10252_CNhs12314_ctss_fwd ThalamusAdultD10252+ bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_forward 0 3607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10252_CNhs12314_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_tpm_fwd ThalamusAdultD10252+ bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_forward 1 3607 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10252+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10252_CNhs12314_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF712PMG ENCSR512YXO Peak bigBed 5 GM21381 ATAC peak 4 3608 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/45196f36-1065-4ae5-9d89-bf66eb405f95/ENCFF712PMG.bigBed\ color 2,199,185\ longLabel GM21381 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR512YXO Peak\ track wgEncodeReg4Epigenetics_ENCFF712PMG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF821TIC ENCSR617IFZ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF CTCF peaks 4 3608 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/f9b93008-28c5-4bc8-834e-d2b8951377d0/ENCFF821TIC.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR617IFZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF821TIC\ type bigBed 5\ useScore 1\ visibility squish\ ThalamusAdultDonor10252_CNhs12314_ctss_rev ThalamusAdultD10252- bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse 0 3608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10252_CNhs12314_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10252_CNhs12314_tpm_rev ThalamusAdultD10252- bigWig thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse 1 3608 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10252.CNhs12314.10154-103A1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10252_CNhs12314_10154-103A1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10154-103A1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10252-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10252_CNhs12314_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10154-103A1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF062JUV ENCSR512YXO Signal bigWig GM21381 ATAC signal 2 3609 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/d3db2064-8e5e-4a24-873e-0345a324a863/ENCFF062JUV.bigWig\ color 2,199,185\ longLabel GM21381 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR512YXO Signal\ track wgEncodeReg4Epigenetics_ENCFF062JUV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF369ARW ENCSR617IFZ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF CTCF ENCSR617IFZ signal 2 3609 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/2b434308-9c16-4925-b25e-744a0c891b25/ENCFF369ARW.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens CTCF CTCF ENCSR617IFZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR617IFZ Signal\ track wgEncodeReg4TfChip_ENCFF369ARW\ type bigWig\ visibility full\ ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_fwd ThalamusAdultD10258Tr1+ bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward 0 3609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_fwd ThalamusAdultD10258Tr1+ bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward 1 3609 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF119CED ENCSR513EVP Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years ATAC peak 4 3610 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/03723f7a-4221-4a22-bfdb-3c8864d7895c/ENCFF119CED.bigBed\ color 2,199,185\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR513EVP Peak\ track wgEncodeReg4Epigenetics_ENCFF119CED\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF777OLK ENCSR617POJ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 peaks 4 3610 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/a127beca-c9d0-4a01-abaa-eb955a695b4f/ENCFF777OLK.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR617POJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF777OLK\ type bigBed 5\ useScore 1\ visibility squish\ ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_rev ThalamusAdultD10258Tr1- bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse 0 3610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep1_CNhs14223_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_rev ThalamusAdultD10258Tr1- bigWig thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse 1 3610 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep1.CNhs14223.10370-105G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep1_CNhs14223_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep1_CNhs14223_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF486INQ ENCSR513EVP Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years ATAC signal 2 3611 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/a45eec9a-73ba-4b8a-bd47-b2d9c0143da8/ENCFF486INQ.bigWig\ color 2,199,185\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR513EVP Signal\ track wgEncodeReg4Epigenetics_ENCFF486INQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF873EVF ENCSR617POJ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 ENCSR617POJ signal 2 3611 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/e05498ef-d639-470b-bda5-27bb9bc35be1/ENCFF873EVF.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP1 ZFP1 ENCSR617POJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR617POJ Signal\ track wgEncodeReg4TfChip_ENCFF873EVF\ type bigWig\ visibility full\ ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_fwd ThalamusAdultD10258Tr2+ bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward 0 3611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_fwd ThalamusAdultD10258Tr2+ bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward 1 3611 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF913WEU ENCSR514QHN Peak bigBed 5 Muscle of leg tissue male embryo 105 days DNase peak 4 3612 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/2bd6be6c-f3f4-41c1-aa8f-c22c6541caf0/ENCFF913WEU.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR514QHN Peak\ track wgEncodeReg4Epigenetics_ENCFF913WEU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF928VSN ENCSR617RSQ Peak bigBed 5 PC-3 EZH2phosphoT487 peaks 4 3612 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/17298ae4-d291-42cf-ba03-a5e63a2a794b/ENCFF928VSN.bigBed\ labelFields none\ longLabel PC-3 EZH2phosphoT487 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR617RSQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF928VSN\ type bigBed 5\ useScore 1\ visibility squish\ ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_rev ThalamusAdultD10258Tr2- bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse 0 3612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep2_CNhs14551_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_rev ThalamusAdultD10258Tr2- bigWig thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse 1 3612 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20adult%2c%20donor10258%2c%20tech_rep2.CNhs14551.10370-105G1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, adult, donor10258, tech_rep2_CNhs14551_10370-105G1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10370-105G1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusAdultD10258Tr2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusAdultDonor10258TechRep2_CNhs14551_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10370-105G1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF135GKT ENCSR514QHN Signal bigWig Muscle of leg tissue male embryo 105 days DNase signal 2 3613 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/e1d15083-67cc-4f63-a4ba-c14eb367452e/ENCFF135GKT.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR514QHN Signal\ track wgEncodeReg4Epigenetics_ENCFF135GKT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF316MAL ENCSR617RSQ Signal bigWig PC-3 EZH2phosphoT487 ENCSR617RSQ signal 2 3613 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/979f4464-ef85-49f4-971d-db5836dea3d7/ENCFF316MAL.bigWig\ color 140,140,140\ longLabel PC-3 EZH2phosphoT487 ENCSR617RSQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR617RSQ Signal\ track wgEncodeReg4TfChip_ENCFF316MAL\ type bigWig\ visibility full\ ThalamusNewbornDonor10223_CNhs14084_ctss_fwd ThalamusNbD10223+ bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward 0 3613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusNewbornDonor10223_CNhs14084_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_tpm_fwd ThalamusNbD10223+ bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward 1 3613 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusNbD10223+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThalamusNewbornDonor10223_CNhs14084_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF307UHG ENCSR515CDW Peak bigBed 5 Body of pancreas tissue female adult 53 years ATAC peak 4 3614 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/8051369e-8f31-42a3-805f-893f5c7ffdf5/ENCFF307UHG.bigBed\ color 2,199,185\ longLabel Body of pancreas tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515CDW Peak\ track wgEncodeReg4Epigenetics_ENCFF307UHG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF967HQR ENCSR618END Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430 ZNF430 peaks 4 3614 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/2fbc805c-c0af-4759-b276-faf37ed447c9/ENCFF967HQR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430 ZNF430 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR618END Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF967HQR\ type bigBed 5\ useScore 1\ visibility squish\ ThalamusNewbornDonor10223_CNhs14084_ctss_rev ThalamusNbD10223- bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse 0 3614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThalamusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusNewbornDonor10223_CNhs14084_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ ThalamusNewbornDonor10223_CNhs14084_tpm_rev ThalamusNbD10223- bigWig thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse 1 3614 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thalamus%2c%20newborn%2c%20donor10223.CNhs14084.10366-105F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thalamus, newborn, donor10223_CNhs14084_10366-105F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10366-105F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThalamusNbD10223-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThalamusNewbornDonor10223_CNhs14084_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10366-105F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF328IAA ENCSR515CDW Signal bigWig Body of pancreas tissue female adult 53 years ATAC signal 2 3615 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/a1c0bcaa-2942-4e93-8408-585db5020b3b/ENCFF328IAA.bigWig\ color 2,199,185\ longLabel Body of pancreas tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515CDW Signal\ track wgEncodeReg4Epigenetics_ENCFF328IAA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF297AGB ENCSR618END Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430 ZNF430 ENCSR618END signal 2 3615 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/3507b254-24a9-4f68-b84a-f3217b4a8614/ENCFF297AGB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF430 ZNF430 ENCSR618END signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR618END Signal\ track wgEncodeReg4TfChip_ENCFF297AGB\ type bigWig\ visibility full\ ThroatAdult_CNhs12858_ctss_fwd ThroatAdult+ bigWig throat, adult_CNhs12858_10209-103G2_forward 0 3615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel throat, adult_CNhs12858_10209-103G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatAdult_CNhs12858_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_tpm_fwd ThroatAdult+ bigWig throat, adult_CNhs12858_10209-103G2_forward 1 3615 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel throat, adult_CNhs12858_10209-103G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatAdult_CNhs12858_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF562XUN ENCSR515EWI Peak bigBed 5 Caki2 DNase peak 4 3616 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e5db81fa-ea11-44dd-b1e8-986223f1cb63/ENCFF562XUN.bigBed\ color 6,218,147\ labelFields none\ longLabel Caki2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515EWI Peak\ track wgEncodeReg4Epigenetics_ENCFF562XUN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF909BYC ENCSR618GDK Peak bigBed 5 K562 CEBPZ peaks 4 3616 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/828357a1-039a-4e83-aeae-a9f67c43b776/ENCFF909BYC.bigBed\ labelFields none\ longLabel K562 CEBPZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR618GDK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF909BYC\ type bigBed 5\ useScore 1\ visibility squish\ ThroatAdult_CNhs12858_ctss_rev ThroatAdult- bigWig throat, adult_CNhs12858_10209-103G2_reverse 0 3616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel throat, adult_CNhs12858_10209-103G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatAdult_CNhs12858_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ ThroatAdult_CNhs12858_tpm_rev ThroatAdult- bigWig throat, adult_CNhs12858_10209-103G2_reverse 1 3616 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20adult.CNhs12858.10209-103G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel throat, adult_CNhs12858_10209-103G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10209-103G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatAdult_CNhs12858_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10209-103G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF138DZK ENCSR515EWI Signal bigWig Caki2 DNase signal 2 3617 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0c2af8d4-8d60-46bb-9286-6e820f3f3dc0/ENCFF138DZK.bigWig\ color 6,218,147\ longLabel Caki2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515EWI Signal\ track wgEncodeReg4Epigenetics_ENCFF138DZK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF092UIN ENCSR618GDK Signal bigWig K562 CEBPZ ENCSR618GDK signal 2 3617 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/42ba362e-2917-4d6c-a6d0-db597c419188/ENCFF092UIN.bigWig\ color 254,75,173\ longLabel K562 CEBPZ ENCSR618GDK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR618GDK Signal\ track wgEncodeReg4TfChip_ENCFF092UIN\ type bigWig\ visibility full\ ThroatFetalDonor1_CNhs11770_ctss_fwd ThroatFetalD1+ bigWig throat, fetal, donor1_CNhs11770_10061-101H7_forward 0 3617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatFetalDonor1_CNhs11770_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_tpm_fwd ThroatFetalD1+ bigWig throat, fetal, donor1_CNhs11770_10061-101H7_forward 1 3617 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThroatFetalDonor1_CNhs11770_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF916QXW ENCSR515LRI Peak bigBed 5 Suprapubic skin tissue female adult 53 years CTCF peak 4 3618 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/32051349-abf3-49da-bb8b-9b4a5bd9d90c/ENCFF916QXW.bigBed\ color 0,176,240\ labelFields none\ longLabel Suprapubic skin tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515LRI Peak\ track wgEncodeReg4Epigenetics_ENCFF916QXW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF265CEM ENCSR618HNF Peak bigBed 5 HEK293 TRIM28 peaks 4 3618 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/5392fde0-f8eb-4628-a2f2-218b7ba7afe1/ENCFF265CEM.bigBed\ labelFields none\ longLabel HEK293 TRIM28 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR618HNF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF265CEM\ type bigBed 5\ useScore 1\ visibility squish\ ThroatFetalDonor1_CNhs11770_ctss_rev ThroatFetalD1- bigWig throat, fetal, donor1_CNhs11770_10061-101H7_reverse 0 3618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThroatFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatFetalDonor1_CNhs11770_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ ThroatFetalDonor1_CNhs11770_tpm_rev ThroatFetalD1- bigWig throat, fetal, donor1_CNhs11770_10061-101H7_reverse 1 3618 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/throat%2c%20fetal%2c%20donor1.CNhs11770.10061-101H7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel throat, fetal, donor1_CNhs11770_10061-101H7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10061-101H7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThroatFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThroatFetalDonor1_CNhs11770_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10061-101H7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF081ZME ENCSR515LRI Signal bigWig Suprapubic skin tissue female adult 53 years CTCF signal 2 3619 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f4c76821-f98d-41c6-8631-b5c680103979/ENCFF081ZME.bigWig\ color 0,176,240\ longLabel Suprapubic skin tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515LRI Signal\ track wgEncodeReg4Epigenetics_ENCFF081ZME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF945VGX ENCSR618HNF Signal bigWig HEK293 TRIM28 ENCSR618HNF signal 2 3619 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/26/8fec08d7-5982-48f3-945f-5487ed21c4e2/ENCFF945VGX.bigWig\ color 92,161,153\ longLabel HEK293 TRIM28 ENCSR618HNF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR618HNF Signal\ track wgEncodeReg4TfChip_ENCFF945VGX\ type bigWig\ visibility full\ ThymusAdultPool1_CNhs10633_ctss_fwd ThymusAdultPl1+ bigWig thymus, adult, pool1_CNhs10633_10027-101D9_forward 0 3619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusAdultPool1_CNhs10633_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_tpm_fwd ThymusAdultPl1+ bigWig thymus, adult, pool1_CNhs10633_10027-101D9_forward 1 3619 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusAdultPool1_CNhs10633_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF854CDW ENCSR515PDV Peak bigBed 5 Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak 4 3620 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/04054ad5-3f30-4c47-8c9c-8b8f0ab2d215/ENCFF854CDW.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515PDV Peak\ track wgEncodeReg4Epigenetics_ENCFF854CDW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF361QXJ ENCSR619GFP Peak bigBed 5 K562 stably expressing HINFP HINFP peaks 4 3620 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/7dcc3e54-a20d-4bfd-9949-2aeb23d85846/ENCFF361QXJ.bigBed\ labelFields none\ longLabel K562 stably expressing HINFP HINFP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR619GFP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF361QXJ\ type bigBed 5\ useScore 1\ visibility squish\ ThymusAdultPool1_CNhs10633_ctss_rev ThymusAdultPl1- bigWig thymus, adult, pool1_CNhs10633_10027-101D9_reverse 0 3620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusAdultPool1_CNhs10633_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ ThymusAdultPool1_CNhs10633_tpm_rev ThymusAdultPl1- bigWig thymus, adult, pool1_CNhs10633_10027-101D9_reverse 1 3620 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20adult%2c%20pool1.CNhs10633.10027-101D9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thymus, adult, pool1_CNhs10633_10027-101D9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10027-101D9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusAdultPool1_CNhs10633_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10027-101D9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF136ORD ENCSR515PDV Signal bigWig Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal 2 3621 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/f867b176-47bd-4060-ad07-3072626817e9/ENCFF136ORD.bigWig\ color 6,218,147\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515PDV Signal\ track wgEncodeReg4Epigenetics_ENCFF136ORD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF168UZK ENCSR619GFP Signal bigWig K562 stably expressing HINFP HINFP ENCSR619GFP signal 2 3621 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6a9c4ac7-6918-4f19-b6ad-58660c196937/ENCFF168UZK.bigWig\ color 254,75,173\ longLabel K562 stably expressing HINFP HINFP ENCSR619GFP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR619GFP Signal\ track wgEncodeReg4TfChip_ENCFF168UZK\ type bigWig\ visibility full\ ThymusFetalPool1_CNhs10650_ctss_fwd ThymusFetalPl1+ bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_forward 0 3621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusFetalPool1_CNhs10650_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_tpm_fwd ThymusFetalPl1+ bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_forward 1 3621 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusFetalPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThymusFetalPool1_CNhs10650_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF110SNH ENCSR515PKY Peak bigBed 5 Smooth muscle cell originated from H9 H3K4me3 peak 4 3622 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/0f05a0c2-8373-4fbc-b4cd-6fd84a253e25/ENCFF110SNH.bigBed\ color 255,0,0\ longLabel Smooth muscle cell originated from H9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515PKY Peak\ track wgEncodeReg4Epigenetics_ENCFF110SNH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF881ECZ ENCSR619OUC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB6 ZBTB6 peaks 4 3622 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/59fd40ad-4333-4da4-8c40-234eb70118fc/ENCFF881ECZ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB6 ZBTB6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR619OUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF881ECZ\ type bigBed 5\ useScore 1\ visibility squish\ ThymusFetalPool1_CNhs10650_ctss_rev ThymusFetalPl1- bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_reverse 0 3622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThymusFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusFetalPool1_CNhs10650_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ ThymusFetalPool1_CNhs10650_tpm_rev ThymusFetalPl1- bigWig thymus, fetal, pool1_CNhs10650_10043-101F7_reverse 1 3622 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thymus%2c%20fetal%2c%20pool1.CNhs10650.10043-101F7.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thymus, fetal, pool1_CNhs10650_10043-101F7_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10043-101F7 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThymusFetalPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThymusFetalPool1_CNhs10650_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10043-101F7\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF216WFR ENCSR515PKY Signal bigWig Smooth muscle cell originated from H9 H3K4me3 signal 2 3623 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/6acee5f0-3e16-4c3e-a02b-4d3ecd7d4577/ENCFF216WFR.bigWig\ color 255,0,0\ longLabel Smooth muscle cell originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR515PKY Signal\ track wgEncodeReg4Epigenetics_ENCFF216WFR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF477ROY ENCSR619OUC Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB6 ZBTB6 ENCSR619OUC signal 2 3623 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/57f5b3e3-707c-42cc-b03f-b80a52e453e5/ENCFF477ROY.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB6 ZBTB6 ENCSR619OUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR619OUC Signal\ track wgEncodeReg4TfChip_ENCFF477ROY\ type bigWig\ visibility full\ ThyroidAdultPool1_CNhs10634_ctss_fwd ThyroidAdultPl1+ bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_forward 0 3623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidAdultPool1_CNhs10634_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_tpm_fwd ThyroidAdultPl1+ bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_forward 1 3623 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidAdultPool1_CNhs10634_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF949HWE ENCSR516CKJ Peak bigBed 5 Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 peak 4 3624 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/e3ff3241-6974-4a98-bcd3-ecef29b6532e/ENCFF949HWE.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516CKJ Peak\ track wgEncodeReg4Epigenetics_ENCFF949HWE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF136CIU ENCSR620DBD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14 ZFP14 peaks 4 3624 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/07d9f381-20df-42b7-8a17-4fd96688f413/ENCFF136CIU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14 ZFP14 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620DBD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF136CIU\ type bigBed 5\ useScore 1\ visibility squish\ ThyroidAdultPool1_CNhs10634_ctss_rev ThyroidAdultPl1- bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_reverse 0 3624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidAdultPool1_CNhs10634_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ ThyroidAdultPool1_CNhs10634_tpm_rev ThyroidAdultPl1- bigWig thyroid, adult, pool1_CNhs10634_10028-101E1_reverse 1 3624 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20adult%2c%20pool1.CNhs10634.10028-101E1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thyroid, adult, pool1_CNhs10634_10028-101E1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10028-101E1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidAdultPool1_CNhs10634_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10028-101E1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF392GLN ENCSR516CKJ Signal bigWig Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 signal 2 3625 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/6541070f-0e3c-4bc9-96d1-1f1e14559fdc/ENCFF392GLN.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516CKJ Signal\ track wgEncodeReg4Epigenetics_ENCFF392GLN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF122AJT ENCSR620DBD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14 ZFP14 ENCSR620DBD signal 2 3625 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/e7ffa672-77b4-4f90-93d9-ce00890f1c9b/ENCFF122AJT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP14 ZFP14 ENCSR620DBD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620DBD Signal\ track wgEncodeReg4TfChip_ENCFF122AJT\ type bigWig\ visibility full\ ThyroidFetalDonor1_CNhs11769_ctss_fwd ThyroidFetalD1+ bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_forward 0 3625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidFetalDonor1_CNhs11769_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_tpm_fwd ThyroidFetalD1+ bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_forward 1 3625 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track ThyroidFetalDonor1_CNhs11769_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF588WOT ENCSR516CPW Peak bigBed 5 Right lobe of liver tissue female adult 47 years ATAC peak 4 3626 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/23/8a26fc1d-5793-43e9-9dd6-b882e1907aa3/ENCFF588WOT.bigBed\ color 2,199,185\ longLabel Right lobe of liver tissue female adult 47 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516CPW Peak\ track wgEncodeReg4Epigenetics_ENCFF588WOT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF341ZEM ENCSR620DUQ Peak bigBed 5 MCF-7 CREB1 peaks 4 3626 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0c9babfa-cd43-41b2-9055-90ef1827819b/ENCFF341ZEM.bigBed\ labelFields none\ longLabel MCF-7 CREB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620DUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF341ZEM\ type bigBed 5\ useScore 1\ visibility squish\ ThyroidFetalDonor1_CNhs11769_ctss_rev ThyroidFetalD1- bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse 0 3626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel ThyroidFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidFetalDonor1_CNhs11769_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ ThyroidFetalDonor1_CNhs11769_tpm_rev ThyroidFetalD1- bigWig thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse 1 3626 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/thyroid%2c%20fetal%2c%20donor1.CNhs11769.10060-101H6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel thyroid, fetal, donor1_CNhs11769_10060-101H6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10060-101H6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel ThyroidFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track ThyroidFetalDonor1_CNhs11769_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10060-101H6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF831BRS ENCSR516CPW Signal bigWig Right lobe of liver tissue female adult 47 years ATAC signal 2 3627 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/23/8611755a-4551-482e-af0b-190a336c4fae/ENCFF831BRS.bigWig\ color 2,199,185\ longLabel Right lobe of liver tissue female adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516CPW Signal\ track wgEncodeReg4Epigenetics_ENCFF831BRS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF471FFW ENCSR620DUQ Signal bigWig MCF-7 CREB1 ENCSR620DUQ signal 2 3627 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5f62dd04-0aac-4bce-b73b-5d5cc0b79ac0/ENCFF471FFW.bigWig\ color 65,171,173\ longLabel MCF-7 CREB1 ENCSR620DUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620DUQ Signal\ track wgEncodeReg4TfChip_ENCFF471FFW\ type bigWig\ visibility full\ TongueAdult_CNhs12853_ctss_fwd TongueAdult+ bigWig tongue, adult_CNhs12853_10203-103F5_forward 0 3627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tongue, adult_CNhs12853_10203-103F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueAdult_CNhs12853_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_tpm_fwd TongueAdult+ bigWig tongue, adult_CNhs12853_10203-103F5_forward 1 3627 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tongue, adult_CNhs12853_10203-103F5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueAdult_CNhs12853_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF833XRU ENCSR516JCM Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 37 years treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak 4 3628 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/d42c79a5-5fdc-44fb-adcf-c018ba1b8167/ENCFF833XRU.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516JCM Peak\ track wgEncodeReg4Epigenetics_ENCFF833XRU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF392YVR ENCSR620MHD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2B KDM2B peaks 4 3628 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/fa1220a6-9465-4c87-a9ad-159f014b6824/ENCFF392YVR.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2B KDM2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620MHD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF392YVR\ type bigBed 5\ useScore 1\ visibility squish\ TongueAdult_CNhs12853_ctss_rev TongueAdult- bigWig tongue, adult_CNhs12853_10203-103F5_reverse 0 3628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tongue, adult_CNhs12853_10203-103F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueAdult_CNhs12853_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ TongueAdult_CNhs12853_tpm_rev TongueAdult- bigWig tongue, adult_CNhs12853_10203-103F5_reverse 1 3628 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20adult.CNhs12853.10203-103F5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tongue, adult_CNhs12853_10203-103F5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10203-103F5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueAdult_CNhs12853_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10203-103F5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF197MIF ENCSR516JCM Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 37 years treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal 2 3629 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/717a74a5-0a6a-4095-a1b7-64dccdd10599/ENCFF197MIF.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516JCM Signal\ track wgEncodeReg4Epigenetics_ENCFF197MIF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF337MWX ENCSR620MHD Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2B KDM2B ENCSR620MHD signal 2 3629 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/c3a81e6f-f3e5-4aa5-a26d-e6e1f67b807e/ENCFF337MWX.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2B KDM2B ENCSR620MHD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620MHD Signal\ track wgEncodeReg4TfChip_ENCFF337MWX\ type bigWig\ visibility full\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_fwd TongueEpidermisD1+ bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward 0 3629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueEpidermisD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_fwd TongueEpidermisD1+ bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward 1 3629 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueEpidermisD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF511KBC ENCSR516LQO Peak bigBed 5 Tibial nerve tissue male adult 37 years H3K27ac peak 4 3630 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/395a650d-06c1-42d8-b7d2-211ee87a6b11/ENCFF511KBC.bigBed\ color 181,145,0\ longLabel Tibial nerve tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516LQO Peak\ track wgEncodeReg4Epigenetics_ENCFF511KBC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF783ADE ENCSR620VIC Peak bigBed 5 K562 stably expressing CEBPG CEBPG peaks 4 3630 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0a4d1266-a7c4-485c-9a27-2e0c6a3bf1ec/ENCFF783ADE.bigBed\ labelFields none\ longLabel K562 stably expressing CEBPG CEBPG peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620VIC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF783ADE\ type bigBed 5\ useScore 1\ visibility squish\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_rev TongueEpidermisD1- bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse 0 3630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueEpidermisD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_rev TongueEpidermisD1- bigWig tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse 1 3630 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%20epidermis%20%28fungiform%20papillae%29%2c%20donor1.CNhs13460.10288-104F9.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tongue epidermis (fungiform papillae), donor1_CNhs13460_10288-104F9_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10288-104F9 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueEpidermisD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueEpidermisFungiformPapillaeDonor1_CNhs13460_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10288-104F9\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF038BIZ ENCSR516LQO Signal bigWig Tibial nerve tissue male adult 37 years H3K27ac signal 2 3631 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/32860bca-fbe8-4861-b7bb-627f82bc3218/ENCFF038BIZ.bigWig\ color 181,145,0\ longLabel Tibial nerve tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516LQO Signal\ track wgEncodeReg4Epigenetics_ENCFF038BIZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF034RSY ENCSR620VIC Signal bigWig K562 stably expressing CEBPG CEBPG ENCSR620VIC signal 2 3631 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ba8364b6-3009-4ab4-80fc-26cbb5d7cd15/ENCFF034RSY.bigWig\ color 254,75,173\ longLabel K562 stably expressing CEBPG CEBPG ENCSR620VIC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620VIC Signal\ track wgEncodeReg4TfChip_ENCFF034RSY\ type bigWig\ visibility full\ TongueFetalDonor1_CNhs11768_ctss_fwd TongueFetalD1+ bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_forward 0 3631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueFetalDonor1_CNhs11768_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_tpm_fwd TongueFetalD1+ bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_forward 1 3631 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TongueFetalDonor1_CNhs11768_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF291TIF ENCSR516LZK Peak bigBed 5 Heart left ventricle tissue male adult 61 years H3K4me3 peak 4 3632 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6901570e-fc95-4333-a350-1c9b0278f971/ENCFF291TIF.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 61 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516LZK Peak\ track wgEncodeReg4Epigenetics_ENCFF291TIF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF751WPG ENCSR620YNB Peak bigBed 5 HepG2 KAT2B peaks 4 3632 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/b66ecc63-eb7b-432e-979f-519c6c4f5bb1/ENCFF751WPG.bigBed\ labelFields none\ longLabel HepG2 KAT2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620YNB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF751WPG\ type bigBed 5\ useScore 1\ visibility squish\ TongueFetalDonor1_CNhs11768_ctss_rev TongueFetalD1- bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_reverse 0 3632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TongueFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueFetalDonor1_CNhs11768_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ TongueFetalDonor1_CNhs11768_tpm_rev TongueFetalD1- bigWig tongue, fetal, donor1_CNhs11768_10059-101H5_reverse 1 3632 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tongue%2c%20fetal%2c%20donor1.CNhs11768.10059-101H5.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tongue, fetal, donor1_CNhs11768_10059-101H5_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10059-101H5 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TongueFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TongueFetalDonor1_CNhs11768_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10059-101H5\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF955DUI ENCSR516LZK Signal bigWig Heart left ventricle tissue male adult 61 years H3K4me3 signal 2 3633 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/4c72d748-ab6f-49b4-a278-7275162995ed/ENCFF955DUI.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 61 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516LZK Signal\ track wgEncodeReg4Epigenetics_ENCFF955DUI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF024UHO ENCSR620YNB Signal bigWig HepG2 KAT2B ENCSR620YNB signal 2 3633 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/4c2950bd-f289-42dd-8500-f801e0f117d0/ENCFF024UHO.bigWig\ color 137,152,82\ longLabel HepG2 KAT2B ENCSR620YNB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR620YNB Signal\ track wgEncodeReg4TfChip_ENCFF024UHO\ type bigWig\ visibility full\ TonsilAdultPool1_CNhs10654_ctss_fwd TonsilAdultPl1+ bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_forward 0 3633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TonsilAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TonsilAdultPool1_CNhs10654_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_tpm_fwd TonsilAdultPl1+ bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_forward 1 3633 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TonsilAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TonsilAdultPool1_CNhs10654_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF902XWO ENCSR516RTV Peak bigBed 5 Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 3634 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/f8b1e771-daa8-4f0f-bb67-9979d5e498ae/ENCFF902XWO.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516RTV Peak\ track wgEncodeReg4Epigenetics_ENCFF902XWO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF717TPQ ENCSR621ATC Peak bigBed 5 K562 ZNF184 peaks 4 3634 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f5f7b14f-173a-4fa4-8fc2-e325c3789edf/ENCFF717TPQ.bigBed\ labelFields none\ longLabel K562 ZNF184 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR621ATC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF717TPQ\ type bigBed 5\ useScore 1\ visibility squish\ TonsilAdultPool1_CNhs10654_ctss_rev TonsilAdultPl1- bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_reverse 0 3634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TonsilAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TonsilAdultPool1_CNhs10654_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ TonsilAdultPool1_CNhs10654_tpm_rev TonsilAdultPl1- bigWig tonsil, adult, pool1_CNhs10654_10047-101G2_reverse 1 3634 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/tonsil%2c%20adult%2c%20pool1.CNhs10654.10047-101G2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel tonsil, adult, pool1_CNhs10654_10047-101G2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10047-101G2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TonsilAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TonsilAdultPool1_CNhs10654_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10047-101G2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF695YHT ENCSR516RTV Signal bigWig Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 3635 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/2dd42f4a-532a-490c-9a0f-e246794e88f0/ENCFF695YHT.bigWig\ color 6,218,147\ longLabel Cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516RTV Signal\ track wgEncodeReg4Epigenetics_ENCFF695YHT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF996GZR ENCSR621ATC Signal bigWig K562 ZNF184 ENCSR621ATC signal 2 3635 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5b13a529-5c90-4663-bece-9ca4a7b9ee64/ENCFF996GZR.bigWig\ color 254,75,173\ longLabel K562 ZNF184 ENCSR621ATC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR621ATC Signal\ track wgEncodeReg4TfChip_ENCFF996GZR\ type bigWig\ visibility full\ TracheaAdultPool1_CNhs10635_ctss_fwd TracheaAdultPl1+ bigWig trachea, adult, pool1_CNhs10635_10029-101E2_forward 0 3635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaAdultPool1_CNhs10635_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_tpm_fwd TracheaAdultPl1+ bigWig trachea, adult, pool1_CNhs10635_10029-101E2_forward 1 3635 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaAdultPool1_CNhs10635_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF010UWZ ENCSR516YAD Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 3636 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/6b842277-62d5-4d3a-ba07-e2833184e830/ENCFF010UWZ.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516YAD Peak\ track wgEncodeReg4Epigenetics_ENCFF010UWZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF838COC ENCSR621PAN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HINFP HINFP peaks 4 3636 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/45f46d49-bc40-4d66-9f5f-f7165da64bed/ENCFF838COC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HINFP HINFP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR621PAN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF838COC\ type bigBed 5\ useScore 1\ visibility squish\ TracheaAdultPool1_CNhs10635_ctss_rev TracheaAdultPl1- bigWig trachea, adult, pool1_CNhs10635_10029-101E2_reverse 0 3636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaAdultPool1_CNhs10635_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ TracheaAdultPool1_CNhs10635_tpm_rev TracheaAdultPl1- bigWig trachea, adult, pool1_CNhs10635_10029-101E2_reverse 1 3636 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20adult%2c%20pool1.CNhs10635.10029-101E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel trachea, adult, pool1_CNhs10635_10029-101E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10029-101E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaAdultPool1_CNhs10635_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10029-101E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF330ZVA ENCSR516YAD Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 3637 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/02e85d95-3944-4ad3-9c43-25801e82a72e/ENCFF330ZVA.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR516YAD Signal\ track wgEncodeReg4Epigenetics_ENCFF330ZVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF017RVI ENCSR621PAN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HINFP HINFP ENCSR621PAN signal 2 3637 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/85bbaf1d-f8ee-4079-9372-bdda1e649d0a/ENCFF017RVI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HINFP HINFP ENCSR621PAN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR621PAN Signal\ track wgEncodeReg4TfChip_ENCFF017RVI\ type bigWig\ visibility full\ TracheaFetalDonor1_CNhs11766_ctss_fwd TracheaFetalD1+ bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_forward 0 3637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaFetalDonor1_CNhs11766_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_tpm_fwd TracheaFetalD1+ bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_forward 1 3637 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track TracheaFetalDonor1_CNhs11766_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF133MEQ ENCSR517NHP Peak bigBed 5 Muscle of arm tissue female embryo 105 days DNase peak 4 3638 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/5d76830f-1dc0-40f8-abfc-f834c680a75a/ENCFF133MEQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR517NHP Peak\ track wgEncodeReg4Epigenetics_ENCFF133MEQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF761IOF ENCSR622AMZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761 ZNF761 peaks 4 3638 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/6f9b6975-944a-469f-a3cb-d0c0fac23b26/ENCFF761IOF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761 ZNF761 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR622AMZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF761IOF\ type bigBed 5\ useScore 1\ visibility squish\ TracheaFetalDonor1_CNhs11766_ctss_rev TracheaFetalD1- bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_reverse 0 3638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel TracheaFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaFetalDonor1_CNhs11766_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ TracheaFetalDonor1_CNhs11766_tpm_rev TracheaFetalD1- bigWig trachea, fetal, donor1_CNhs11766_10058-101H4_reverse 1 3638 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/trachea%2c%20fetal%2c%20donor1.CNhs11766.10058-101H4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel trachea, fetal, donor1_CNhs11766_10058-101H4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10058-101H4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel TracheaFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track TracheaFetalDonor1_CNhs11766_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10058-101H4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF681LTR ENCSR517NHP Signal bigWig Muscle of arm tissue female embryo 105 days DNase signal 2 3639 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/a2fbeca9-9d18-4c71-984c-62b10a1577d7/ENCFF681LTR.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR517NHP Signal\ track wgEncodeReg4Epigenetics_ENCFF681LTR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF192SII ENCSR622AMZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761 ZNF761 ENCSR622AMZ signal 2 3639 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/8e392eac-de26-4e58-a86e-94d3b9135ccb/ENCFF192SII.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF761 ZNF761 ENCSR622AMZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR622AMZ Signal\ track wgEncodeReg4TfChip_ENCFF192SII\ type bigWig\ visibility full\ UmbilicalCordFetalDonor1_CNhs11765_ctss_fwd UmbilicalCordFetalD1+ bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward 0 3639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UmbilicalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UmbilicalCordFetalDonor1_CNhs11765_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_tpm_fwd UmbilicalCordFetalD1+ bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward 1 3639 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UmbilicalCordFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UmbilicalCordFetalDonor1_CNhs11765_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF973IWM ENCSR517NSQ Peak bigBed 5 Heart left ventricle tissue male adult 61 years H3K27ac peak 4 3640 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/bd83bacf-bb77-4673-a2f3-ab895b288204/ENCFF973IWM.bigBed\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 61 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR517NSQ Peak\ track wgEncodeReg4Epigenetics_ENCFF973IWM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF955FSH ENCSR623RFC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP110 SP110 peaks 4 3640 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/21/e2298fe3-dd3d-4cf3-bdba-25d30740aee9/ENCFF955FSH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP110 SP110 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR623RFC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF955FSH\ type bigBed 5\ useScore 1\ visibility squish\ UmbilicalCordFetalDonor1_CNhs11765_ctss_rev UmbilicalCordFetalD1- bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse 0 3640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.ctss.rev.bw\ color 0,0,255\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UmbilicalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UmbilicalCordFetalDonor1_CNhs11765_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ UmbilicalCordFetalDonor1_CNhs11765_tpm_rev UmbilicalCordFetalD1- bigWig umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse 1 3640 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3 regulation 0 bigDataUrl /gbdb/hg38/fantom5/umbilical%20cord%2c%20fetal%2c%20donor1.CNhs11765.10057-101H3.hg38.tpm.rev.bw\ color 0,0,255\ longLabel umbilical cord, fetal, donor1_CNhs11765_10057-101H3_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10057-101H3 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UmbilicalCordFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UmbilicalCordFetalDonor1_CNhs11765_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10057-101H3\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF163DHS ENCSR517NSQ Signal bigWig Heart left ventricle tissue male adult 61 years H3K27ac signal 2 3641 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ac9743d1-3206-464f-af49-7ecdb70ee0d5/ENCFF163DHS.bigWig\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 61 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR517NSQ Signal\ track wgEncodeReg4Epigenetics_ENCFF163DHS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF999JJU ENCSR623RFC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP110 SP110 ENCSR623RFC signal 2 3641 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/21/1f5c11da-680a-4834-86fa-c87b88952169/ENCFF999JJU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP110 SP110 ENCSR623RFC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR623RFC Signal\ track wgEncodeReg4TfChip_ENCFF999JJU\ type bigWig\ visibility full\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_fwd UniversalRnaNormalTissuesBiochainPl1+ bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward 0 3641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UniversalRnaNormalTissuesBiochainPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_fwd UniversalRnaNormalTissuesBiochainPl1+ bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward 1 3641 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UniversalRnaNormalTissuesBiochainPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF895EER ENCSR518JGY Peak bigBed 5 Foreskin melanocyte male newborn DNase peak 4 3642 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/ffe7f0e0-7c2e-43ae-ba7a-815c522b03f4/ENCFF895EER.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin melanocyte male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR518JGY Peak\ track wgEncodeReg4Epigenetics_ENCFF895EER\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF195KVB ENCSR623TZE Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 peaks 4 3642 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/76f7053b-8ce3-46b3-a2c6-9af98e749205/ENCFF195KVB.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR623TZE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF195KVB\ type bigBed 5\ useScore 1\ visibility squish\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_rev UniversalRnaNormalTissuesBiochainPl1- bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse 0 3642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UniversalRnaNormalTissuesBiochainPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_rev UniversalRnaNormalTissuesBiochainPl1- bigWig Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse 1 3642 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Universal%20RNA%20-%20Human%20Normal%20Tissues%20Biochain%2c%20pool1.CNhs10612.10007-101B4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Universal RNA - Human Normal Tissues Biochain, pool1_CNhs10612_10007-101B4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10007-101B4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UniversalRnaNormalTissuesBiochainPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UniversalRNAHumanNormalTissuesBiochainPool1_CNhs10612_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10007-101B4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF368SOB ENCSR518JGY Signal bigWig Foreskin melanocyte male newborn DNase signal 2 3643 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/8d345dc9-51b9-4e6d-893e-1fe349b50eaa/ENCFF368SOB.bigWig\ color 6,218,147\ longLabel Foreskin melanocyte male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR518JGY Signal\ track wgEncodeReg4Epigenetics_ENCFF368SOB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF888ZSG ENCSR623TZE Signal bigWig WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 ENCSR623TZE signal 2 3643 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/25485da0-088c-436f-b0a3-a5603274ee60/ENCFF888ZSG.bigWig\ color 127,133,209\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD4 SMAD4 ENCSR623TZE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR623TZE Signal\ track wgEncodeReg4TfChip_ENCFF888ZSG\ type bigWig\ visibility full\ UrethraDonor2_CNhs13464_ctss_fwd UrethraD2+ bigWig Urethra, donor2_CNhs13464_10319-105A4_forward 0 3643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel Urethra, donor2_CNhs13464_10319-105A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrethraD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UrethraDonor2_CNhs13464_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_tpm_fwd UrethraD2+ bigWig Urethra, donor2_CNhs13464_10319-105A4_forward 1 3643 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel Urethra, donor2_CNhs13464_10319-105A4_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrethraD2+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UrethraDonor2_CNhs13464_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF400AMQ ENCSR518WRP Peak bigBed 5 Middle frontal area 46 tissue female adult 78 years DNase peak 4 3644 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/c1c4ee55-92ba-4adf-a3db-228a0b2e2fd7/ENCFF400AMQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR518WRP Peak\ track wgEncodeReg4Epigenetics_ENCFF400AMQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF860JVN ENCSR625XAV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB8A ZBTB8A peaks 4 3644 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/6764be20-47a8-4b52-b0f4-5df4929de722/ENCFF860JVN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB8A ZBTB8A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR625XAV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF860JVN\ type bigBed 5\ useScore 1\ visibility squish\ UrethraDonor2_CNhs13464_ctss_rev UrethraD2- bigWig Urethra, donor2_CNhs13464_10319-105A4_reverse 0 3644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.ctss.rev.bw\ color 0,0,255\ longLabel Urethra, donor2_CNhs13464_10319-105A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UrethraD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UrethraDonor2_CNhs13464_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ UrethraDonor2_CNhs13464_tpm_rev UrethraD2- bigWig Urethra, donor2_CNhs13464_10319-105A4_reverse 1 3644 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4 regulation 0 bigDataUrl /gbdb/hg38/fantom5/Urethra%2c%20donor2.CNhs13464.10319-105A4.hg38.tpm.rev.bw\ color 0,0,255\ longLabel Urethra, donor2_CNhs13464_10319-105A4_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10319-105A4 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UrethraD2-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UrethraDonor2_CNhs13464_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10319-105A4\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF604AYM ENCSR518WRP Signal bigWig Middle frontal area 46 tissue female adult 78 years DNase signal 2 3645 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e7a26f9b-7801-4f04-8a44-f45bbc808a9d/ENCFF604AYM.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR518WRP Signal\ track wgEncodeReg4Epigenetics_ENCFF604AYM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF784XYP ENCSR625XAV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB8A ZBTB8A ENCSR625XAV signal 2 3645 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/6b34d380-bc15-40d0-ab8e-b33c43d8c044/ENCFF784XYP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB8A ZBTB8A ENCSR625XAV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR625XAV Signal\ track wgEncodeReg4TfChip_ENCFF784XYP\ type bigWig\ visibility full\ UterusAdultPool1_CNhs11676_ctss_fwd UterusAdultPl1+ bigWig uterus, adult, pool1_CNhs11676_10100-102D1_forward 0 3645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusAdultPool1_CNhs11676_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_tpm_fwd UterusAdultPl1+ bigWig uterus, adult, pool1_CNhs11676_10100-102D1_forward 1 3645 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusAdultPl1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusAdultPool1_CNhs11676_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF882KRB ENCSR518YYX Peak bigBed 5 Activated CD8-positive, naive alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads DNase peak 4 3646 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/04/e480cc44-b934-4063-bd30-de32f6bd4524/ENCFF882KRB.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR518YYX Peak\ track wgEncodeReg4Epigenetics_ENCFF882KRB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF105ZMI ENCSR626VUC Peak bigBed 5 GM12878 ETV6 peaks 4 3646 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8f095ca7-c0d1-4b21-9982-f67be94dbfeb/ENCFF105ZMI.bigBed\ labelFields none\ longLabel GM12878 ETV6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR626VUC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF105ZMI\ type bigBed 5\ useScore 1\ visibility squish\ UterusAdultPool1_CNhs11676_ctss_rev UterusAdultPl1- bigWig uterus, adult, pool1_CNhs11676_10100-102D1_reverse 0 3646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusAdultPool1_CNhs11676_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ UterusAdultPool1_CNhs11676_tpm_rev UterusAdultPl1- bigWig uterus, adult, pool1_CNhs11676_10100-102D1_reverse 1 3646 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20adult%2c%20pool1.CNhs11676.10100-102D1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel uterus, adult, pool1_CNhs11676_10100-102D1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10100-102D1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusAdultPl1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusAdultPool1_CNhs11676_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10100-102D1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF441IWW ENCSR518YYX Signal bigWig Activated CD8-positive, naive alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads DNase signal 2 3647 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/04/0995b720-def3-48d7-bdff-a01a74396c39/ENCFF441IWW.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, naive alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR518YYX Signal\ track wgEncodeReg4Epigenetics_ENCFF441IWW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF894HHJ ENCSR626VUC Signal bigWig GM12878 ETV6 ENCSR626VUC signal 2 3647 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/dfbd87e1-7d24-424f-89d9-0e0588b69ae2/ENCFF894HHJ.bigWig\ color 254,75,173\ longLabel GM12878 ETV6 ENCSR626VUC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR626VUC Signal\ track wgEncodeReg4TfChip_ENCFF894HHJ\ type bigWig\ visibility full\ UterusFetalDonor1_CNhs11763_ctss_fwd UterusFetalD1+ bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_forward 0 3647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusFetalDonor1_CNhs11763_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_tpm_fwd UterusFetalD1+ bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_forward 1 3647 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusFetalD1+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track UterusFetalDonor1_CNhs11763_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF708UVY ENCSR519AVF Peak bigBed 5 Nephron organoid female embryo 5 days, 49 days post differentiation H3K27ac peak 4 3648 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/27/439592a3-f16a-465a-b94e-26e411a37c82/ENCFF708UVY.bigBed\ color 181,145,0\ longLabel Nephron organoid female embryo 5 days, 49 days post differentiation H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR519AVF Peak\ track wgEncodeReg4Epigenetics_ENCFF708UVY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF654ZCV ENCSR631JFU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF9 IRF9 peaks 4 3648 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/210fad74-f82b-443e-8cea-3ec44e6e2a66/ENCFF654ZCV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF9 IRF9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR631JFU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF654ZCV\ type bigBed 5\ useScore 1\ visibility squish\ UterusFetalDonor1_CNhs11763_ctss_rev UterusFetalD1- bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_reverse 0 3648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.ctss.rev.bw\ color 0,0,255\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel UterusFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusFetalDonor1_CNhs11763_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ UterusFetalDonor1_CNhs11763_tpm_rev UterusFetalD1- bigWig uterus, fetal, donor1_CNhs11763_10055-101H1_reverse 1 3648 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1 regulation 0 bigDataUrl /gbdb/hg38/fantom5/uterus%2c%20fetal%2c%20donor1.CNhs11763.10055-101H1.hg38.tpm.rev.bw\ color 0,0,255\ longLabel uterus, fetal, donor1_CNhs11763_10055-101H1_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10055-101H1 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel UterusFetalD1-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track UterusFetalDonor1_CNhs11763_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10055-101H1\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF174GYF ENCSR519AVF Signal bigWig Nephron organoid female embryo 5 days, 49 days post differentiation H3K27ac signal 2 3649 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3b23dd42-e65f-4064-b195-df3bacca4231/ENCFF174GYF.bigWig\ color 181,145,0\ longLabel Nephron organoid female embryo 5 days, 49 days post differentiation H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR519AVF Signal\ track wgEncodeReg4Epigenetics_ENCFF174GYF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF211TXC ENCSR631JFU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF9 IRF9 ENCSR631JFU signal 2 3649 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/fa4913ec-a17e-4cba-9434-9031525b48ed/ENCFF211TXC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF9 IRF9 ENCSR631JFU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR631JFU Signal\ track wgEncodeReg4TfChip_ENCFF211TXC\ type bigWig\ visibility full\ VaginaAdult_CNhs12854_ctss_fwd VaginaAdult+ bigWig vagina, adult_CNhs12854_10204-103F6_forward 0 3649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel vagina, adult_CNhs12854_10204-103F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VaginaAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VaginaAdult_CNhs12854_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_tpm_fwd VaginaAdult+ bigWig vagina, adult_CNhs12854_10204-103F6_forward 1 3649 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel vagina, adult_CNhs12854_10204-103F6_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VaginaAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VaginaAdult_CNhs12854_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF925GDM ENCSR519CFV Peak bigBed 5 Aorta tissue male adult 34 years H3K27ac peak 4 3650 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b88700d0-ca5d-4e45-9875-ef48b4a87828/ENCFF925GDM.bigBed\ color 181,145,0\ longLabel Aorta tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR519CFV Peak\ track wgEncodeReg4Epigenetics_ENCFF925GDM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF865LIO ENCSR631WAA Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB17 ZBTB17 peaks 4 3650 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/295f4686-281a-48ff-8330-6f84695c36c5/ENCFF865LIO.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB17 ZBTB17 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR631WAA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF865LIO\ type bigBed 5\ useScore 1\ visibility squish\ VaginaAdult_CNhs12854_ctss_rev VaginaAdult- bigWig vagina, adult_CNhs12854_10204-103F6_reverse 0 3650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.ctss.rev.bw\ color 0,0,255\ longLabel vagina, adult_CNhs12854_10204-103F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VaginaAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VaginaAdult_CNhs12854_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ VaginaAdult_CNhs12854_tpm_rev VaginaAdult- bigWig vagina, adult_CNhs12854_10204-103F6_reverse 1 3650 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vagina%2c%20adult.CNhs12854.10204-103F6.hg38.tpm.rev.bw\ color 0,0,255\ longLabel vagina, adult_CNhs12854_10204-103F6_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10204-103F6 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VaginaAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VaginaAdult_CNhs12854_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10204-103F6\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF651QMY ENCSR519CFV Signal bigWig Aorta tissue male adult 34 years H3K27ac signal 2 3651 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2f719761-77e7-47d4-b44e-40cfaa04d01e/ENCFF651QMY.bigWig\ color 181,145,0\ longLabel Aorta tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR519CFV Signal\ track wgEncodeReg4Epigenetics_ENCFF651QMY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF731DQV ENCSR631WAA Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB17 ZBTB17 ENCSR631WAA signal 2 3651 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/ca593d0b-0236-42b7-9c08-f355a35a4da7/ENCFF731DQV.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB17 ZBTB17 ENCSR631WAA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR631WAA Signal\ track wgEncodeReg4TfChip_ENCFF731DQV\ type bigWig\ visibility full\ VeinAdult_CNhs12844_ctss_fwd VeinAdult+ bigWig vein, adult_CNhs12844_10191-103E2_forward 0 3651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.ctss.fwd.bw\ color 255,0,0\ longLabel vein, adult_CNhs12844_10191-103E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VeinAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VeinAdult_CNhs12844_ctss_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_tpm_fwd VeinAdult+ bigWig vein, adult_CNhs12844_10191-103E2_forward 1 3651 255 0 0 255 127 127 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.tpm.fwd.bw\ color 255,0,0\ longLabel vein, adult_CNhs12844_10191-103E2_forward\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VeinAdult+\ subGroups sequenceTech=hCAGE category=tissue strand=forward\ track VeinAdult_CNhs12844_tpm_fwd\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF397MBL ENCSR520BAD Peak bigBed 5 Gastrocnemius medialis tissue male adult 54 years DNase peak 4 3652 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/ee69393e-fb5c-4ae2-8a48-52bb168eaa6a/ENCFF397MBL.bigBed\ color 6,218,147\ labelFields none\ longLabel Gastrocnemius medialis tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520BAD Peak\ track wgEncodeReg4Epigenetics_ENCFF397MBL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF921JQW ENCSR632DCH Peak bigBed 5 K562 stably expressing ATF3 ATF3 peaks 4 3652 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6099470f-2d92-4e96-b095-c3122e2f7b08/ENCFF921JQW.bigBed\ labelFields none\ longLabel K562 stably expressing ATF3 ATF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632DCH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF921JQW\ type bigBed 5\ useScore 1\ visibility squish\ VeinAdult_CNhs12844_ctss_rev VeinAdult- bigWig vein, adult_CNhs12844_10191-103E2_reverse 0 3652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.ctss.rev.bw\ color 0,0,255\ longLabel vein, adult_CNhs12844_10191-103E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_read_counts off\ shortLabel VeinAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VeinAdult_CNhs12844_ctss_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ VeinAdult_CNhs12844_tpm_rev VeinAdult- bigWig vein, adult_CNhs12844_10191-103E2_reverse 1 3652 0 0 255 127 127 255 0 0 0 http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2 regulation 0 bigDataUrl /gbdb/hg38/fantom5/vein%2c%20adult.CNhs12844.10191-103E2.hg38.tpm.rev.bw\ color 0,0,255\ longLabel vein, adult_CNhs12844_10191-103E2_reverse\ maxHeightPixels 100:8:8\ metadata ontology_id=10191-103E2 sequence_tech=hCAGE\ parent TSS_activity_TPM off\ shortLabel VeinAdult-\ subGroups sequenceTech=hCAGE category=tissue strand=reverse\ track VeinAdult_CNhs12844_tpm_rev\ type bigWig\ url http://fantom.gsc.riken.jp/5/sstar/FF:10191-103E2\ urlLabel FANTOM5 Details:\ wgEncodeReg4Epigenetics_ENCFF898XFY ENCSR520BAD Signal bigWig Gastrocnemius medialis tissue male adult 54 years DNase signal 2 3653 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/4848d361-97b6-432d-ab25-cd60ef14c2a5/ENCFF898XFY.bigWig\ color 6,218,147\ longLabel Gastrocnemius medialis tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520BAD Signal\ track wgEncodeReg4Epigenetics_ENCFF898XFY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF506QXK ENCSR632DCH Signal bigWig K562 stably expressing ATF3 ATF3 ENCSR632DCH signal 2 3653 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/57c6ab7a-b7ee-424e-8a65-0c7142be475e/ENCFF506QXK.bigWig\ color 254,75,173\ longLabel K562 stably expressing ATF3 ATF3 ENCSR632DCH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632DCH Signal\ track wgEncodeReg4TfChip_ENCFF506QXK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF287BIL ENCSR520BIM Peak bigBed 5 Body of pancreas tissue male adult 37 years H3K27ac peak 4 3654 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/36f6f539-086a-43c5-99a1-f4c773dab6fd/ENCFF287BIL.bigBed\ color 181,145,0\ longLabel Body of pancreas tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520BIM Peak\ track wgEncodeReg4Epigenetics_ENCFF287BIL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF138UHK ENCSR632SHZ Peak bigBed 5 K562 stably expressing NFE2L1 NFE2L1 peaks 4 3654 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ff8c7e32-52f9-4a26-ae7f-b48a474d06c9/ENCFF138UHK.bigBed\ labelFields none\ longLabel K562 stably expressing NFE2L1 NFE2L1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632SHZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF138UHK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF989SFZ ENCSR520BIM Signal bigWig Body of pancreas tissue male adult 37 years H3K27ac signal 2 3655 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/8f5b6406-71af-44d1-bc3b-2fd90e21a1de/ENCFF989SFZ.bigWig\ color 181,145,0\ longLabel Body of pancreas tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520BIM Signal\ track wgEncodeReg4Epigenetics_ENCFF989SFZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF779XLK ENCSR632SHZ Signal bigWig K562 stably expressing NFE2L1 NFE2L1 ENCSR632SHZ signal 2 3655 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/110f126f-2fda-47d6-9ef2-2aa7a74e9432/ENCFF779XLK.bigWig\ color 254,75,173\ longLabel K562 stably expressing NFE2L1 NFE2L1 ENCSR632SHZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632SHZ Signal\ track wgEncodeReg4TfChip_ENCFF779XLK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF994XIF ENCSR520BUX Peak bigBed 5 Liver tissue male adult 78 years H3K4me3 peak 4 3656 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3c3ec9f1-c1d7-4103-813d-43d3d4487d20/ENCFF994XIF.bigBed\ color 255,0,0\ longLabel Liver tissue male adult 78 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520BUX Peak\ track wgEncodeReg4Epigenetics_ENCFF994XIF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF167TUA ENCSR632SIM Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFHX2 ZFHX2 peaks 4 3656 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f5d2013f-894f-41e6-8031-50b41c5f8235/ENCFF167TUA.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFHX2 ZFHX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632SIM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF167TUA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962JEC ENCSR520BUX Signal bigWig Liver tissue male adult 78 years H3K4me3 signal 2 3657 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/1dc39797-6909-4413-9f72-3221c8f20c80/ENCFF962JEC.bigWig\ color 255,0,0\ longLabel Liver tissue male adult 78 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520BUX Signal\ track wgEncodeReg4Epigenetics_ENCFF962JEC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF850DYU ENCSR632SIM Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFHX2 ZFHX2 ENCSR632SIM signal 2 3657 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/0adc8ef7-c467-497b-89a6-881e63f16e6c/ENCFF850DYU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZFHX2 ZFHX2 ENCSR632SIM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632SIM Signal\ track wgEncodeReg4TfChip_ENCFF850DYU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF069TSW ENCSR520KVD Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 3658 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/06553343-6a0f-446c-aa5b-d0216e545c51/ENCFF069TSW.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520KVD Peak\ track wgEncodeReg4Epigenetics_ENCFF069TSW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF730DTW ENCSR632TJQ Peak bigBed 5 K562 ILF3 peaks 4 3658 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8bacde06-7d70-4f76-8939-274380a21a66/ENCFF730DTW.bigBed\ labelFields none\ longLabel K562 ILF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632TJQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF730DTW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF519CLG ENCSR520KVD Signal bigWig Middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 3659 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/3e4e4539-dfc3-4a1f-b040-277a8008b35e/ENCFF519CLG.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520KVD Signal\ track wgEncodeReg4Epigenetics_ENCFF519CLG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF716EMG ENCSR632TJQ Signal bigWig K562 ILF3 ENCSR632TJQ signal 2 3659 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ff2ff57b-236b-4700-b51c-3be945bcd90d/ENCFF716EMG.bigWig\ color 254,75,173\ longLabel K562 ILF3 ENCSR632TJQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR632TJQ Signal\ track wgEncodeReg4TfChip_ENCFF716EMG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF111GPF ENCSR520QDR Peak bigBed 5 Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak 4 3660 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/41aa4cca-b6a9-4909-b399-ff4dfdaf0386/ENCFF111GPF.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520QDR Peak\ track wgEncodeReg4Epigenetics_ENCFF111GPF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF385PDC ENCSR633EIC Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens PBX2 PBX2 peaks 4 3660 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/51f04ae6-7b22-41cd-b326-593b3c0e9331/ENCFF385PDC.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens PBX2 PBX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633EIC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF385PDC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF380KOQ ENCSR520QDR Signal bigWig Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal 2 3661 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6cd18548-7ea9-4f2e-b7fb-ba4d6deb41e7/ENCFF380KOQ.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520QDR Signal\ track wgEncodeReg4Epigenetics_ENCFF380KOQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF840PGP ENCSR633EIC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens PBX2 PBX2 ENCSR633EIC signal 2 3661 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/c9c865d3-48e3-4140-ba1c-fc966ddba343/ENCFF840PGP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens PBX2 PBX2 ENCSR633EIC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633EIC Signal\ track wgEncodeReg4TfChip_ENCFF840PGP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF492XZV ENCSR520WTV Peak bigBed 5 SJSA1 DNase peak 4 3662 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/9023470e-8856-4582-9884-f7a0feb9b42e/ENCFF492XZV.bigBed\ color 6,218,147\ labelFields none\ longLabel SJSA1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520WTV Peak\ track wgEncodeReg4Epigenetics_ENCFF492XZV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF540TRC ENCSR633HRJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1A HNF1A peaks 4 3662 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/cef738f4-cd95-4dbe-9161-933b19ba0822/ENCFF540TRC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1A HNF1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633HRJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF540TRC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF281VSR ENCSR520WTV Signal bigWig SJSA1 DNase signal 2 3663 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/4d0aab79-b976-43a5-88d6-ae561169f2b7/ENCFF281VSR.bigWig\ color 6,218,147\ longLabel SJSA1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR520WTV Signal\ track wgEncodeReg4Epigenetics_ENCFF281VSR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF921REB ENCSR633HRJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1A HNF1A ENCSR633HRJ signal 2 3663 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/1afe1c7b-7d42-4a0e-888e-aed6bd0c624a/ENCFF921REB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF1A HNF1A ENCSR633HRJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633HRJ Signal\ track wgEncodeReg4TfChip_ENCFF921REB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF465REM ENCSR522ALT Peak bigBed 5 K562 treated with 1 μM EED226 for 24 hours ATAC peak 4 3664 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/e53f0495-8041-4b74-bc63-49a23429542a/ENCFF465REM.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM EED226 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522ALT Peak\ track wgEncodeReg4Epigenetics_ENCFF465REM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF754JQR ENCSR633OEO Peak bigBed 5 Sigmoid colon tissue female adult (51 years) POLR2AphosphoS5 peaks 4 3664 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c33bbc29-71a1-479c-93b1-a6b7de465c14/ENCFF754JQR.bigBed\ labelFields none\ longLabel Sigmoid colon tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633OEO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF754JQR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF979NGT ENCSR522ALT Signal bigWig K562 treated with 1 μM EED226 for 24 hours ATAC signal 2 3665 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/6dbaa7f1-f0dd-4773-92de-8c3594e35a12/ENCFF979NGT.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM EED226 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522ALT Signal\ track wgEncodeReg4Epigenetics_ENCFF979NGT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF785PVS ENCSR633OEO Signal bigWig Sigmoid colon tissue female adult (51 years) POLR2AphosphoS5 ENCSR633OEO signal 2 3665 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/61cefcb8-e3f2-4869-b913-0c73cc20694b/ENCFF785PVS.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (51 years) POLR2AphosphoS5 ENCSR633OEO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633OEO Signal\ track wgEncodeReg4TfChip_ENCFF785PVS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF450GYJ ENCSR522FGG Peak bigBed 5 Stomach tissue male embryo 108 days DNase peak 4 3666 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9133d7ab-dd17-4014-8dff-9532f95764ec/ENCFF450GYJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue male embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522FGG Peak\ track wgEncodeReg4Epigenetics_ENCFF450GYJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF681ZHO ENCSR633OVO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFX3 RFX3 peaks 4 3666 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/3829ade6-eb51-472a-be65-e68bc5066751/ENCFF681ZHO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFX3 RFX3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633OVO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF681ZHO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF799VNT ENCSR522FGG Signal bigWig Stomach tissue male embryo 108 days DNase signal 2 3667 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/6ac1f701-bbc1-4b5b-8f05-76a7ecd5e402/ENCFF799VNT.bigWig\ color 6,218,147\ longLabel Stomach tissue male embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522FGG Signal\ track wgEncodeReg4Epigenetics_ENCFF799VNT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF477OOO ENCSR633OVO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFX3 RFX3 ENCSR633OVO signal 2 3667 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/443c9f5e-6bef-4f76-8f2b-005f4a1a9b8e/ENCFF477OOO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFX3 RFX3 ENCSR633OVO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR633OVO Signal\ track wgEncodeReg4TfChip_ENCFF477OOO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF021YOJ ENCSR522FGI Peak bigBed 5 Heart right ventricle tissue male adult 43 years ATAC peak 4 3668 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/f6cb7c16-9475-4c79-89b6-1c3cde052ca9/ENCFF021YOJ.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 43 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522FGI Peak\ track wgEncodeReg4Epigenetics_ENCFF021YOJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF305JAB ENCSR634OAQ Peak bigBed 5 NCI-H929 CTCF peaks 4 3668 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/29fe68f6-f131-4265-a5d2-60e12f92eeda/ENCFF305JAB.bigBed\ labelFields none\ longLabel NCI-H929 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR634OAQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF305JAB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF442VFE ENCSR522FGI Signal bigWig Heart right ventricle tissue male adult 43 years ATAC signal 2 3669 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/f52d391e-d12b-4b04-af29-56dc789132a3/ENCFF442VFE.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 43 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522FGI Signal\ track wgEncodeReg4Epigenetics_ENCFF442VFE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF327WOL ENCSR634OAQ Signal bigWig NCI-H929 CTCF ENCSR634OAQ signal 2 3669 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/21aac1b2-2fa2-427c-9acb-caed553671be/ENCFF327WOL.bigWig\ color 2,199,185\ longLabel NCI-H929 CTCF ENCSR634OAQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR634OAQ Signal\ track wgEncodeReg4TfChip_ENCFF327WOL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF390UMK ENCSR522MTS Peak bigBed 5 Esophagus muscularis mucosa tissue male adult 37 years H3K27ac peak 4 3670 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/d93492c3-e409-4488-97e8-583ea9bf0a26/ENCFF390UMK.bigBed\ color 181,145,0\ longLabel Esophagus muscularis mucosa tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522MTS Peak\ track wgEncodeReg4Epigenetics_ENCFF390UMK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF842XOY ENCSR635EXI Peak bigBed 5 K562 ZSCAN29 peaks 4 3670 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/8d623379-a4e2-4e2d-8e8a-d64021e05a68/ENCFF842XOY.bigBed\ labelFields none\ longLabel K562 ZSCAN29 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635EXI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF842XOY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF322ZPK ENCSR522MTS Signal bigWig Esophagus muscularis mucosa tissue male adult 37 years H3K27ac signal 2 3671 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/fa47ffb8-463b-48ad-ac6d-e003a9dc862d/ENCFF322ZPK.bigWig\ color 181,145,0\ longLabel Esophagus muscularis mucosa tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR522MTS Signal\ track wgEncodeReg4Epigenetics_ENCFF322ZPK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF444KTT ENCSR635EXI Signal bigWig K562 ZSCAN29 ENCSR635EXI signal 2 3671 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/ba24214e-4aad-4996-b558-5312edac4d3c/ENCFF444KTT.bigWig\ color 254,75,173\ longLabel K562 ZSCAN29 ENCSR635EXI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635EXI Signal\ track wgEncodeReg4TfChip_ENCFF444KTT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF058XEC ENCSR523IAZ Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 3672 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/f5def738-90ac-4626-b9db-d359dcced6f8/ENCFF058XEC.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR523IAZ Peak\ track wgEncodeReg4Epigenetics_ENCFF058XEC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF039ZWC ENCSR635GTR Peak bigBed 5 K562 stably expressing TEAD2 TEAD2 peaks 4 3672 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/92e6d4cb-a9e6-46d2-881b-5dfb08900242/ENCFF039ZWC.bigBed\ labelFields none\ longLabel K562 stably expressing TEAD2 TEAD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635GTR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF039ZWC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF921VVL ENCSR523IAZ Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal 2 3673 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/57b2f051-58e7-492b-b655-3508a74ba910/ENCFF921VVL.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR523IAZ Signal\ track wgEncodeReg4Epigenetics_ENCFF921VVL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF322YXF ENCSR635GTR Signal bigWig K562 stably expressing TEAD2 TEAD2 ENCSR635GTR signal 2 3673 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4494b9c9-0aeb-44b3-9542-567cfe42f7dd/ENCFF322YXF.bigWig\ color 254,75,173\ longLabel K562 stably expressing TEAD2 TEAD2 ENCSR635GTR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635GTR Signal\ track wgEncodeReg4TfChip_ENCFF322YXF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF887SQY ENCSR524CPZ Peak bigBed 5 HG02798 ATAC peak 4 3674 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/d28aedec-0cd0-4380-90c7-45255fb3f33e/ENCFF887SQY.bigBed\ color 2,199,185\ longLabel HG02798 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524CPZ Peak\ track wgEncodeReg4Epigenetics_ENCFF887SQY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF929IAJ ENCSR635NOQ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF8 KLF8 peaks 4 3674 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/b6415f7a-51d2-4ece-adc1-6eeaacc16fcb/ENCFF929IAJ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF8 KLF8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635NOQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF929IAJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF234SOC ENCSR524CPZ Signal bigWig HG02798 ATAC signal 2 3675 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/62af87f0-4235-4e42-9d4d-02eb60458ea6/ENCFF234SOC.bigWig\ color 2,199,185\ longLabel HG02798 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524CPZ Signal\ track wgEncodeReg4Epigenetics_ENCFF234SOC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF091JYJ ENCSR635NOQ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF8 KLF8 ENCSR635NOQ signal 2 3675 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/6b19457e-c26c-48d1-a857-b0d2bd7bb2c9/ENCFF091JYJ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF8 KLF8 ENCSR635NOQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635NOQ Signal\ track wgEncodeReg4TfChip_ENCFF091JYJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF794SCF ENCSR524DWS Peak bigBed 5 Renal cortex interstitium tissue female embryo 120 days DNase peak 4 3676 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/cb304028-1926-41b0-add3-dba0c753d307/ENCFF794SCF.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal cortex interstitium tissue female embryo 120 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524DWS Peak\ track wgEncodeReg4Epigenetics_ENCFF794SCF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF289RIE ENCSR635OSG Peak bigBed 5 Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 peaks 4 3676 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f535ab8c-db2d-42e0-8663-e88523b513f0/ENCFF289RIE.bigBed\ labelFields none\ longLabel Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635OSG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF289RIE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF743ZDV ENCSR524DWS Signal bigWig Renal cortex interstitium tissue female embryo 120 days DNase signal 2 3677 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/3ee9852e-5474-4234-90d2-bcbfb80505c9/ENCFF743ZDV.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue female embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524DWS Signal\ track wgEncodeReg4Epigenetics_ENCFF743ZDV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF711GHA ENCSR635OSG Signal bigWig Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 ENCSR635OSG signal 2 3677 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/567d8d17-d49c-496a-a712-7a265cc3d7e7/ENCFF711GHA.bigWig\ color 137,152,82\ longLabel Liver tissue female child (6 years) and with nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 ENCSR635OSG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635OSG Signal\ track wgEncodeReg4TfChip_ENCFF711GHA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF862HUE ENCSR524MPL Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 3678 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/d7ebf1ed-a990-4d47-887a-90ed0bba4bd6/ENCFF862HUE.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524MPL Peak\ track wgEncodeReg4Epigenetics_ENCFF862HUE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF594LZE ENCSR635SKD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3 NFATC3 peaks 4 3678 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/1cb1d6a3-cd46-452f-97db-769f12396385/ENCFF594LZE.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3 NFATC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635SKD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF594LZE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF686LXM ENCSR524MPL Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 3679 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/d06486d4-c948-4fe2-ba2f-acf3489d0248/ENCFF686LXM.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524MPL Signal\ track wgEncodeReg4Epigenetics_ENCFF686LXM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF245KTF ENCSR635SKD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3 NFATC3 ENCSR635SKD signal 2 3679 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/4a03d8bc-28a9-4b7f-962f-3b70254189a2/ENCFF245KTF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFATC3 NFATC3 ENCSR635SKD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635SKD Signal\ track wgEncodeReg4TfChip_ENCFF245KTF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF445QFI ENCSR524QBS Peak bigBed 5 Cardiac septum tissue female adult 41 years DNase peak 4 3680 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/46676fa9-bf4d-4042-9942-12a46257d5e8/ENCFF445QFI.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiac septum tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524QBS Peak\ track wgEncodeReg4Epigenetics_ENCFF445QFI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF790ZRQ ENCSR635XLM Peak bigBed 5 Upper lobe of left lung tissue female adult (53 years) EP300 peaks 4 3680 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/afdce2ba-65c7-40d4-a8f0-34de717d7c34/ENCFF790ZRQ.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (53 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635XLM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF790ZRQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF279EDL ENCSR524QBS Signal bigWig Cardiac septum tissue female adult 41 years DNase signal 2 3681 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/27370b04-d89a-4e88-aacf-7df1cdd5bb39/ENCFF279EDL.bigWig\ color 6,218,147\ longLabel Cardiac septum tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524QBS Signal\ track wgEncodeReg4Epigenetics_ENCFF279EDL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF741LER ENCSR635XLM Signal bigWig Upper lobe of left lung tissue female adult (53 years) EP300 ENCSR635XLM signal 2 3681 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/b81bdf97-d67b-4304-9e36-9e492db43576/ENCFF741LER.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (53 years) EP300 ENCSR635XLM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR635XLM Signal\ track wgEncodeReg4TfChip_ENCFF741LER\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF446TCT ENCSR524QPZ Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 78 years DNase peak 4 3682 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/021e0233-b051-4508-90ff-95f272c20e1e/ENCFF446TCT.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524QPZ Peak\ track wgEncodeReg4Epigenetics_ENCFF446TCT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF969VBY ENCSR636EYA Peak bigBed 5 MCF-7 CTBP1 peaks 4 3682 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/6533433e-09ec-4dd0-b938-a083824e04e5/ENCFF969VBY.bigBed\ labelFields none\ longLabel MCF-7 CTBP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR636EYA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF969VBY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF335GSN ENCSR524QPZ Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 78 years DNase signal 2 3683 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/7e889c46-7604-4787-94b8-41e3860336c1/ENCFF335GSN.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524QPZ Signal\ track wgEncodeReg4Epigenetics_ENCFF335GSN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF033DSQ ENCSR636EYA Signal bigWig MCF-7 CTBP1 ENCSR636EYA signal 2 3683 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/a29c4b01-6136-4142-8d9f-213230c50069/ENCFF033DSQ.bigWig\ color 65,171,173\ longLabel MCF-7 CTBP1 ENCSR636EYA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR636EYA Signal\ track wgEncodeReg4TfChip_ENCFF033DSQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF805HLN ENCSR524ZSN Peak bigBed 5 K562 treated with 2.5 μM Galeterone for 4 hours ATAC peak 4 3684 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/cbd11dba-8bf8-4f5b-b089-6fe0bdee32f8/ENCFF805HLN.bigBed\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524ZSN Peak\ track wgEncodeReg4Epigenetics_ENCFF805HLN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF576UEQ ENCSR636MKU Peak bigBed 5 GM12878 BACH1 peaks 4 3684 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ce6016cd-871e-4507-9077-ad8d031fdfcb/ENCFF576UEQ.bigBed\ labelFields none\ longLabel GM12878 BACH1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR636MKU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF576UEQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF105KLZ ENCSR524ZSN Signal bigWig K562 treated with 2.5 μM Galeterone for 4 hours ATAC signal 2 3685 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/5ec9e662-c8e5-4ec5-93e2-4077ba3081a6/ENCFF105KLZ.bigWig\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR524ZSN Signal\ track wgEncodeReg4Epigenetics_ENCFF105KLZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF900OJJ ENCSR636MKU Signal bigWig GM12878 BACH1 ENCSR636MKU signal 2 3685 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/aaaac793-60e3-49e9-ac54-db1287954b0f/ENCFF900OJJ.bigWig\ color 254,75,173\ longLabel GM12878 BACH1 ENCSR636MKU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR636MKU Signal\ track wgEncodeReg4TfChip_ENCFF900OJJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF467PXH ENCSR525MZF Peak bigBed 5 Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak 4 3686 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/e5821899-13bd-4d37-9b9b-58c269240cbb/ENCFF467PXH.bigBed\ color 181,145,0\ longLabel Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR525MZF Peak\ track wgEncodeReg4Epigenetics_ENCFF467PXH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF935UWH ENCSR636YLV Peak bigBed 5 A549 MAZ peaks 4 3686 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/68f469a9-ba0b-4e70-b1f5-9c101760f625/ENCFF935UWH.bigBed\ labelFields none\ longLabel A549 MAZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR636YLV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF935UWH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF447DVQ ENCSR525MZF Signal bigWig Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal 2 3687 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/cb719415-e838-48c9-bd59-d1431beddb66/ENCFF447DVQ.bigWig\ color 181,145,0\ longLabel Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR525MZF Signal\ track wgEncodeReg4Epigenetics_ENCFF447DVQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF387TDK ENCSR636YLV Signal bigWig A549 MAZ ENCSR636YLV signal 2 3687 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/744cbca8-7ec3-47ac-889c-26acf512abbe/ENCFF387TDK.bigWig\ color 130,163,45\ longLabel A549 MAZ ENCSR636YLV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR636YLV Signal\ track wgEncodeReg4TfChip_ENCFF387TDK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF633LVU ENCSR525VCH Peak bigBed 5 Effector CD4-positive, alpha-beta T cell female adult 25 years DNase peak 4 3688 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/1f1f1dee-a0da-4e31-b527-22bc7fc89f6e/ENCFF633LVU.bigBed\ color 6,218,147\ labelFields none\ longLabel Effector CD4-positive, alpha-beta T cell female adult 25 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR525VCH Peak\ track wgEncodeReg4Epigenetics_ENCFF633LVU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF313QBQ ENCSR637QAM Peak bigBed 5 GM12878 TRIM22 peaks 4 3688 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/73d6aae8-e66d-4bcb-905b-b25e518520ad/ENCFF313QBQ.bigBed\ labelFields none\ longLabel GM12878 TRIM22 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR637QAM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF313QBQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF151NIC ENCSR525VCH Signal bigWig Effector CD4-positive, alpha-beta T cell female adult 25 years DNase signal 2 3689 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/660e4680-e1a5-4a6b-83d1-eb4d3f339d44/ENCFF151NIC.bigWig\ color 6,218,147\ longLabel Effector CD4-positive, alpha-beta T cell female adult 25 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR525VCH Signal\ track wgEncodeReg4Epigenetics_ENCFF151NIC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF980WYP ENCSR637QAM Signal bigWig GM12878 TRIM22 ENCSR637QAM signal 2 3689 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/93ac669a-669f-4745-8140-65a28834252d/ENCFF980WYP.bigWig\ color 254,75,173\ longLabel GM12878 TRIM22 ENCSR637QAM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR637QAM Signal\ track wgEncodeReg4TfChip_ENCFF980WYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF784LWO ENCSR525VXD Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 3690 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/1ad02461-98a2-46c3-8ee7-9624ccb2e838/ENCFF784LWO.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR525VXD Peak\ track wgEncodeReg4Epigenetics_ENCFF784LWO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF475JCE ENCSR637RKG Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens PBX1 PBX1 peaks 4 3690 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/08/9bac8b1e-498d-4eac-9945-676a8d340bc5/ENCFF475JCE.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens PBX1 PBX1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR647CXR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF031ZWH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF579DHC ENCSR532FEO Signal bigWig Stomach smooth muscle tissue female adult 84 years H3K4me3 signal 2 3717 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e076c834-e303-444e-ac47-19f65c1c0e4b/ENCFF579DHC.bigWig\ color 255,0,0\ longLabel Stomach smooth muscle tissue female adult 84 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR532FEO Signal\ track wgEncodeReg4Epigenetics_ENCFF579DHC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF653WIX ENCSR647PSR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF687 ZNF687 peaks 4 3717 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/477819cc-608a-4082-9e1f-e75460cdee73/ENCFF653WIX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF687 ZNF687 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR532STE Peak\ track wgEncodeReg4Epigenetics_ENCFF448WZL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF962LOU ENCSR647SQF Signal bigWig Mesothelial cell of epicardium CTCF ENCSR647SQF signal 2 3720 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/1499d339-3748-4d24-ae22-78fe2d824c1a/ENCFF962LOU.bigWig\ color 116,50,165\ longLabel Mesothelial cell of epicardium CTCF ENCSR647SQF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR647SQF Signal\ track wgEncodeReg4TfChip_ENCFF962LOU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF393NEJ ENCSR532STE Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 83 years H3K4me3 signal 2 3721 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/60d48c8a-76cc-4655-9659-b97986e6ee11/ENCFF393NEJ.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 83 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR532STE Signal\ track wgEncodeReg4Epigenetics_ENCFF393NEJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF392LDT ENCSR647ZXA Peak bigBed 5 K562 stably expressing MEF2D MEF2D peaks 4 3721 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/1a759892-baad-4b50-b8af-dd021b080dad/ENCFF392LDT.bigBed\ labelFields none\ longLabel K562 stably expressing MEF2D MEF2D peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR533VAF Peak\ track wgEncodeReg4Epigenetics_ENCFF487FQC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF125BET ENCSR647ZXA Signal bigWig K562 stably expressing MEF2D MEF2D ENCSR647ZXA signal 2 3722 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/ee0c6f51-8521-4238-863f-29f40e776bca/ENCFF125BET.bigWig\ color 254,75,173\ longLabel K562 stably expressing MEF2D MEF2D ENCSR647ZXA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR647ZXA Signal\ track wgEncodeReg4TfChip_ENCFF125BET\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF118HQX ENCSR533VAF Signal bigWig Heart tissue female embryo 147 days DNase signal 2 3723 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/69b7e473-a994-472d-830a-633b49d6677d/ENCFF118HQX.bigWig\ color 6,218,147\ longLabel Heart tissue female embryo 147 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR533VAF Signal\ track wgEncodeReg4Epigenetics_ENCFF118HQX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF225VHG ENCSR650AWW Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens PHB PHB peaks 4 3723 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/a4e44ce9-da06-43bf-b38a-5150e6a20f5b/ENCFF225VHG.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens PHB PHB peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR534OJE Peak\ track wgEncodeReg4Epigenetics_ENCFF444KFE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF717KTN ENCSR650AWW Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens PHB PHB ENCSR650AWW signal 2 3724 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/9b8e0607-2649-4fcb-9921-76e60d7a61fa/ENCFF717KTN.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens PHB PHB ENCSR650AWW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR650AWW Signal\ track wgEncodeReg4TfChip_ENCFF717KTN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF243CAS ENCSR534OJE Signal bigWig Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal 2 3725 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/336ee5a0-483c-4d1c-a7ed-bb85226f74ae/ENCFF243CAS.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR534OJE Signal\ track wgEncodeReg4Epigenetics_ENCFF243CAS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF539BYI ENCSR653WFU Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I peaks 4 3725 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/a26c7837-898c-4bef-9cb9-8618b1067bf1/ENCFF539BYI.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR534RXN Peak\ track wgEncodeReg4Epigenetics_ENCFF456XVJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF943OMR ENCSR653WFU Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I ENCSR653WFU signal 2 3726 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/508faa52-2bd0-45e4-a46f-ccc6b8c5722c/ENCFF943OMR.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens GTF2I GTF2I ENCSR653WFU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR653WFU Signal\ track wgEncodeReg4TfChip_ENCFF943OMR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF774EDF ENCSR534RXN Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult 21 years DNase signal 2 3727 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/09/4cd8ea65-1a71-47af-b36f-4399c96650fb/ENCFF774EDF.bigWig\ color 6,218,147\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell female adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR534RXN Signal\ track wgEncodeReg4Epigenetics_ENCFF774EDF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF551HCU ENCSR654CQU Peak bigBed 5 K562 SNIP1 peaks 4 3727 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/b3d3e7fd-c100-43c9-a87c-788b521e9a90/ENCFF551HCU.bigBed\ labelFields none\ longLabel K562 SNIP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR654CQU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF551HCU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF003MAY ENCSR535GFO Peak bigBed 5 Tibial artery tissue male adult 54 years H3K27ac peak 4 3728 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/3327b73e-97b6-4399-b109-f104755e3fd5/ENCFF003MAY.bigBed\ color 181,145,0\ longLabel Tibial artery tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR535GFO Peak\ track wgEncodeReg4Epigenetics_ENCFF003MAY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF842DIG ENCSR654CQU Signal bigWig K562 SNIP1 ENCSR654CQU signal 2 3728 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/6f5578d8-59ac-4d30-b471-f59a7b888fd4/ENCFF842DIG.bigWig\ color 254,75,173\ longLabel K562 SNIP1 ENCSR654CQU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR654CQU Signal\ track wgEncodeReg4TfChip_ENCFF842DIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF010WWO ENCSR535GFO Signal bigWig Tibial artery tissue male adult 54 years H3K27ac signal 2 3729 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/588dfa84-adc8-486b-ad9a-c5613c642fcb/ENCFF010WWO.bigWig\ color 181,145,0\ longLabel Tibial artery tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR535GFO Signal\ track wgEncodeReg4Epigenetics_ENCFF010WWO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF837QVX ENCSR654PQY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616 ZNF616 peaks 4 3729 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/717c4fc9-1458-4d17-84e0-046d99e980ac/ENCFF837QVX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616 ZNF616 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR654PQY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF837QVX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF641RPD ENCSR535XRY Peak bigBed 5 Angular gyrus tissue male adult 81 years H3K4me3 peak 4 3730 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/00b89b21-c219-410e-8fb1-4d6966cade49/ENCFF641RPD.bigBed\ color 255,0,0\ longLabel Angular gyrus tissue male adult 81 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR535XRY Peak\ track wgEncodeReg4Epigenetics_ENCFF641RPD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF983TKQ ENCSR654PQY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616 ZNF616 ENCSR654PQY signal 2 3730 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/59f7babf-2926-4973-9d8f-5f3ca8546ed1/ENCFF983TKQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF616 ZNF616 ENCSR654PQY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR654PQY Signal\ track wgEncodeReg4TfChip_ENCFF983TKQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF854IJU ENCSR535XRY Signal bigWig Angular gyrus tissue male adult 81 years H3K4me3 signal 2 3731 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/4d85da48-74ef-46d7-9a0c-b0798120f910/ENCFF854IJU.bigWig\ color 255,0,0\ longLabel Angular gyrus tissue male adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR535XRY Signal\ track wgEncodeReg4Epigenetics_ENCFF854IJU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF902RQN ENCSR655ECZ Peak bigBed 5 Vagina tissue female adult (51 years) CTCF peaks 4 3731 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/9ff2e56f-9f5c-49b3-9352-2cd04cdb1333/ENCFF902RQN.bigBed\ labelFields none\ longLabel Vagina tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR655ECZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF902RQN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF631YNB ENCSR535YYH Peak bigBed 5 Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 peak 4 3732 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/1886d668-8b3d-4d08-bd8a-d42483b37ac4/ENCFF631YNB.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR535YYH Peak\ track wgEncodeReg4Epigenetics_ENCFF631YNB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF258LTU ENCSR655ECZ Signal bigWig Vagina tissue female adult (51 years) CTCF ENCSR655ECZ signal 2 3732 255 101 174 255 178 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/0763e3aa-a061-4862-81fa-9bcdeac3ae56/ENCFF258LTU.bigWig\ color 255,101,174\ longLabel Vagina tissue female adult (51 years) CTCF ENCSR655ECZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR655ECZ Signal\ track wgEncodeReg4TfChip_ENCFF258LTU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF593NJY ENCSR535YYH Signal bigWig Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 signal 2 3733 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3723462d-cff1-47a5-859e-ef3a0bd42297/ENCFF593NJY.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD8-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR535YYH Signal\ track wgEncodeReg4Epigenetics_ENCFF593NJY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF618PVM ENCSR656JZL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HHEX HHEX peaks 4 3733 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/6a6e8137-34a0-42e8-b73a-c97f63a7ed4b/ENCFF618PVM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HHEX HHEX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR656JZL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF618PVM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF046ZSZ ENCSR536NGW Peak bigBed 5 Heart tissue male embryo 96 days DNase peak 4 3734 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/56b49b0b-891e-465f-b913-47bf35bd38e5/ENCFF046ZSZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue male embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR536NGW Peak\ track wgEncodeReg4Epigenetics_ENCFF046ZSZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF749YZS ENCSR656JZL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HHEX HHEX ENCSR656JZL signal 2 3734 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/528ec4bc-0f85-4d8d-8f1d-4eac2073a8a4/ENCFF749YZS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HHEX HHEX ENCSR656JZL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR656JZL Signal\ track wgEncodeReg4TfChip_ENCFF749YZS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF362AGC ENCSR536NGW Signal bigWig Heart tissue male embryo 96 days DNase signal 2 3735 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/9e10a431-deff-4a9e-8b74-4fea7b0b7d69/ENCFF362AGC.bigWig\ color 6,218,147\ longLabel Heart tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR536NGW Signal\ track wgEncodeReg4Epigenetics_ENCFF362AGC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF018MKA ENCSR656MXA Peak bigBed 5 Neural progenitor cell originated from H9 EZH2phosphoT487 peaks 4 3735 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/cfe2fd69-b5b6-4b9f-93dc-73a0804aad74/ENCFF018MKA.bigBed\ labelFields none\ longLabel Neural progenitor cell originated from H9 EZH2phosphoT487 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR656MXA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF018MKA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF500OSY ENCSR536VAY Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase pe 4 3736 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c9408062-465e-4b3c-8922-f7322318c941/ENCFF500OSY.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR536VAY Peak\ track wgEncodeReg4Epigenetics_ENCFF500OSY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF797XTU ENCSR656MXA Signal bigWig Neural progenitor cell originated from H9 EZH2phosphoT487 ENCSR656MXA signal 2 3736 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/82164ad4-0b66-4742-a17b-46e0e7950cbf/ENCFF797XTU.bigWig\ color 155,155,18\ longLabel Neural progenitor cell originated from H9 EZH2phosphoT487 ENCSR656MXA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR656MXA Signal\ track wgEncodeReg4TfChip_ENCFF797XTU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF841DAP ENCSR536VAY Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase si 2 3737 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/71e9637f-bbcb-4e4b-9d92-d3acdda4bb7b/ENCFF841DAP.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-12 subunit alpha for 24 hours, 100 ng/mL Interleukin-12 subunit beta for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR536VAY Signal\ track wgEncodeReg4Epigenetics_ENCFF841DAP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF991QZL ENCSR656SIB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED5 ZBED5 peaks 4 3737 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/ed7eb38d-3df6-41a6-aa1d-c5404990b249/ENCFF991QZL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED5 ZBED5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR656SIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF991QZL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF844OLI ENCSR537BGX Peak bigBed 5 Lower lobe of left lung tissue female adult 61 years DNase peak 4 3738 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/9055455f-100a-470d-98a6-6e6b43da2992/ENCFF844OLI.bigBed\ color 6,218,147\ labelFields none\ longLabel Lower lobe of left lung tissue female adult 61 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR537BGX Peak\ track wgEncodeReg4Epigenetics_ENCFF844OLI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF117OQV ENCSR656SIB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED5 ZBED5 ENCSR656SIB signal 2 3738 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/7d630397-7bb2-4c61-b44d-78f9f6e04caf/ENCFF117OQV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBED5 ZBED5 ENCSR656SIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR656SIB Signal\ track wgEncodeReg4TfChip_ENCFF117OQV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF162GDL ENCSR537BGX Signal bigWig Lower lobe of left lung tissue female adult 61 years DNase signal 2 3739 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/0ff26824-5381-4d63-8a77-1b2906589ef7/ENCFF162GDL.bigWig\ color 6,218,147\ longLabel Lower lobe of left lung tissue female adult 61 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR537BGX Signal\ track wgEncodeReg4Epigenetics_ENCFF162GDL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF057YFW ENCSR657EOF Peak bigBed 5 K562 NFRKB peaks 4 3739 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/7d9ef298-edc2-47de-bd43-1d5db0f158ff/ENCFF057YFW.bigBed\ labelFields none\ longLabel K562 NFRKB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR657EOF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF057YFW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF464BHZ ENCSR537KJA Peak bigBed 5 Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 3740 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/c9d5f96c-9cdd-46e6-9654-2cec49d379d8/ENCFF464BHZ.bigBed\ color 255,0,0\ longLabel Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR537KJA Peak\ track wgEncodeReg4Epigenetics_ENCFF464BHZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF672LLW ENCSR657EOF Signal bigWig K562 NFRKB ENCSR657EOF signal 2 3740 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/aa9988f1-189d-4d19-9b2a-d4d5f74d6222/ENCFF672LLW.bigWig\ color 254,75,173\ longLabel K562 NFRKB ENCSR657EOF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR657EOF Signal\ track wgEncodeReg4TfChip_ENCFF672LLW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF621UOH ENCSR537KJA Signal bigWig Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 3741 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/d2da5c45-5e23-404a-a999-e7f7255eafe6/ENCFF621UOH.bigWig\ color 255,0,0\ longLabel Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR537KJA Signal\ track wgEncodeReg4Epigenetics_ENCFF621UOH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF168IBR ENCSR657JLK Peak bigBed 5 K562 SIN3B peaks 4 3741 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5b29542a-9588-4473-80f2-6caf18d40fa3/ENCFF168IBR.bigBed\ labelFields none\ longLabel K562 SIN3B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR657JLK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF168IBR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF178YHZ ENCSR537TXP Peak bigBed 5 T-helper 17 cell male adult 50 years DNase peak 4 3742 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/844d9006-753b-4d47-81d2-b6e7c16e7d2c/ENCFF178YHZ.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 17 cell male adult 50 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR537TXP Peak\ track wgEncodeReg4Epigenetics_ENCFF178YHZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF947JQN ENCSR657JLK Signal bigWig K562 SIN3B ENCSR657JLK signal 2 3742 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a16fddd1-92ff-41fd-a220-88a504e116cc/ENCFF947JQN.bigWig\ color 254,75,173\ longLabel K562 SIN3B ENCSR657JLK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR657JLK Signal\ track wgEncodeReg4TfChip_ENCFF947JQN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF797FHU ENCSR537TXP Signal bigWig T-helper 17 cell male adult 50 years DNase signal 2 3743 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/6cf00cb5-7b38-4699-8110-6c57ea4d8a22/ENCFF797FHU.bigWig\ color 6,218,147\ longLabel T-helper 17 cell male adult 50 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR537TXP Signal\ track wgEncodeReg4Epigenetics_ENCFF797FHU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF513CEX ENCSR657PEW Peak bigBed 5 GM12878 LARP7 peaks 4 3743 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/89439491-4024-4590-8ec0-c90e8486dff9/ENCFF513CEX.bigBed\ labelFields none\ longLabel GM12878 LARP7 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR538GXY Peak\ track wgEncodeReg4Epigenetics_ENCFF553GIB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF941WFR ENCSR657PEW Signal bigWig GM12878 LARP7 ENCSR657PEW signal 2 3744 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/e2f4b84f-85b9-40d7-b38c-16f54e3c00b5/ENCFF941WFR.bigWig\ color 254,75,173\ longLabel GM12878 LARP7 ENCSR657PEW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR657PEW Signal\ track wgEncodeReg4TfChip_ENCFF941WFR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF523VVA ENCSR538GXY Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 87 years H3K4me3 signal 2 3745 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/39f53800-aba9-4838-b777-e472d7b61d7d/ENCFF523VVA.bigWig\ color 255,0,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 87 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR538GXY Signal\ track wgEncodeReg4Epigenetics_ENCFF523VVA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF962VHQ ENCSR658WFQ Peak bigBed 5 K562 NCOA1 peaks 4 3745 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/4318b9b2-b755-483a-8469-c62a2625e0de/ENCFF962VHQ.bigBed\ labelFields none\ longLabel K562 NCOA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR658WFQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF962VHQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF056LOI ENCSR538URI Peak bigBed 5 Multiple sclerosis IgD-negative memory B cell H3K27ac peak 4 3746 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3695d91c-3a53-4bc4-8c13-019813c9bbe1/ENCFF056LOI.bigBed\ color 181,145,0\ longLabel Multiple sclerosis IgD-negative memory B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR538URI Peak\ track wgEncodeReg4Epigenetics_ENCFF056LOI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF526BWY ENCSR658WFQ Signal bigWig K562 NCOA1 ENCSR658WFQ signal 2 3746 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/19a3e932-f85e-4057-8116-32a627cd8a34/ENCFF526BWY.bigWig\ color 254,75,173\ longLabel K562 NCOA1 ENCSR658WFQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR658WFQ Signal\ track wgEncodeReg4TfChip_ENCFF526BWY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF263PCC ENCSR538URI Signal bigWig Multiple sclerosis IgD-negative memory B cell H3K27ac signal 2 3747 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/763daec3-f34d-46a2-ad2d-7e892dc8b655/ENCFF263PCC.bigWig\ color 181,145,0\ longLabel Multiple sclerosis IgD-negative memory B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR538URI Signal\ track wgEncodeReg4Epigenetics_ENCFF263PCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF723PFC ENCSR658YLN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 PATZ1 peaks 4 3747 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/e8e76fc8-139e-4e3e-99ca-857c8be80b80/ENCFF723PFC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 PATZ1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR658YLN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF723PFC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF919VZF ENCSR539TKY Peak bigBed 5 KMS-11 H3K4me3 peak 4 3748 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/27/4a983136-2a01-420d-b194-d94362b9f71b/ENCFF919VZF.bigBed\ color 255,0,0\ labelFields none\ longLabel KMS-11 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR539TKY Peak\ track wgEncodeReg4Epigenetics_ENCFF919VZF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF318CGU ENCSR658YLN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 PATZ1 ENCSR658YLN signal 2 3748 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/9343310b-edce-467d-9cc2-b2712d19695e/ENCFF318CGU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 PATZ1 ENCSR658YLN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR658YLN Signal\ track wgEncodeReg4TfChip_ENCFF318CGU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF477PME ENCSR539TKY Signal bigWig KMS-11 H3K4me3 signal 2 3749 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/27/4c268a3e-2f6a-4193-95dc-28c308b5695c/ENCFF477PME.bigWig\ color 255,0,0\ longLabel KMS-11 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR539TKY Signal\ track wgEncodeReg4Epigenetics_ENCFF477PME\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF801IBC ENCSR659CCI Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 peaks 4 3749 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/7f5459d2-c712-4ec3-8da2-5919c24ceffd/ENCFF801IBC.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR659CCI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF801IBC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF620EOQ ENCSR539WBA Peak bigBed 5 Body of pancreas tissue male adult 37 years DNase peak 4 3750 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/8b74b292-33f3-43ad-9287-29727e08f712/ENCFF620EOQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Body of pancreas tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR539WBA Peak\ track wgEncodeReg4Epigenetics_ENCFF620EOQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF196JAB ENCSR659CCI Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 ENCSR659CCI signal 2 3750 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/c989c99e-7c1c-4d64-9c8f-a4da80b373bb/ENCFF196JAB.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXK1 FOXK1 ENCSR659CCI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR659CCI Signal\ track wgEncodeReg4TfChip_ENCFF196JAB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF087WEP ENCSR539WBA Signal bigWig Body of pancreas tissue male adult 37 years DNase signal 2 3751 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/95ef2f9c-7a5a-4b77-9a92-9133b6899b59/ENCFF087WEP.bigWig\ color 6,218,147\ longLabel Body of pancreas tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR539WBA Signal\ track wgEncodeReg4Epigenetics_ENCFF087WEP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF195CCI ENCSR659LJJ Peak bigBed 5 A549 HDAC2 peaks 4 3751 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d24e20d6-d043-491a-bf2c-d542c494dbd4/ENCFF195CCI.bigBed\ labelFields none\ longLabel A549 HDAC2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR659LJJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF195CCI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF038UOB ENCSR540ADS Peak bigBed 5 Lung tissue female adult 30 years H3K27ac peak 4 3752 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/50e37d77-8244-4d97-91c5-02cbc29de7b6/ENCFF038UOB.bigBed\ color 181,145,0\ longLabel Lung tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540ADS Peak\ track wgEncodeReg4Epigenetics_ENCFF038UOB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF090SPB ENCSR659LJJ Signal bigWig A549 HDAC2 ENCSR659LJJ signal 2 3752 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/05d4a60e-2fb3-4123-b0a0-91a2b196c025/ENCFF090SPB.bigWig\ color 130,163,45\ longLabel A549 HDAC2 ENCSR659LJJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR659LJJ Signal\ track wgEncodeReg4TfChip_ENCFF090SPB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF155XCD ENCSR540ADS Signal bigWig Lung tissue female adult 30 years H3K27ac signal 2 3753 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/bcf4de49-80f4-4fa5-802d-252949ead610/ENCFF155XCD.bigWig\ color 181,145,0\ longLabel Lung tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540ADS Signal\ track wgEncodeReg4Epigenetics_ENCFF155XCD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF776YJH ENCSR659SCK Peak bigBed 5 HepG2 TOE1 peaks 4 3753 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ddcd5a75-b22b-4f52-bc69-1b6cd708e7d3/ENCFF776YJH.bigBed\ labelFields none\ longLabel HepG2 TOE1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR659SCK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF776YJH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF651PTY ENCSR540BML Peak bigBed 5 Subcutaneous adipose tissue tissue female adult 53 years ATAC peak 4 3754 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/cfdd592f-a9d1-4a02-8d5b-f3b923841da2/ENCFF651PTY.bigBed\ color 2,199,185\ longLabel Subcutaneous adipose tissue tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540BML Peak\ track wgEncodeReg4Epigenetics_ENCFF651PTY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF108GEJ ENCSR659SCK Signal bigWig HepG2 TOE1 ENCSR659SCK signal 2 3754 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/30df93fc-25a8-4715-82eb-1e334ba8bd66/ENCFF108GEJ.bigWig\ color 137,152,82\ longLabel HepG2 TOE1 ENCSR659SCK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR659SCK Signal\ track wgEncodeReg4TfChip_ENCFF108GEJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF094EYJ ENCSR540BML Signal bigWig Subcutaneous adipose tissue tissue female adult 53 years ATAC signal 2 3755 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/f34812d4-08cd-4abb-956f-b722b516dcc6/ENCFF094EYJ.bigWig\ color 2,199,185\ longLabel Subcutaneous adipose tissue tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540BML Signal\ track wgEncodeReg4Epigenetics_ENCFF094EYJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF038VEZ ENCSR659YWQ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF449 ZNF449 peaks 4 3755 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/6a0a5211-cb86-4749-aa8d-4a956d433c01/ENCFF038VEZ.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF449 ZNF449 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540KQC Peak\ track wgEncodeReg4Epigenetics_ENCFF332MQB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF521YCW ENCSR659YWQ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF449 ZNF449 ENCSR659YWQ signal 2 3756 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/169bc9a5-a7f9-4953-9e3a-4467f118daeb/ENCFF521YCW.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF449 ZNF449 ENCSR659YWQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR659YWQ Signal\ track wgEncodeReg4TfChip_ENCFF521YCW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF878HSW ENCSR540KQC Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal 2 3757 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/b03d65d1-5f14-4fd3-9deb-33428e6dbb4a/ENCFF878HSW.bigWig\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540KQC Signal\ track wgEncodeReg4Epigenetics_ENCFF878HSW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF305ZLM ENCSR660ENW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2 CAMTA2 peaks 4 3757 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/e0aca690-5506-452c-bef4-cd60ef9849d5/ENCFF305ZLM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2 CAMTA2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540MGS Peak\ track wgEncodeReg4Epigenetics_ENCFF436OMS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF815FGV ENCSR660ENW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2 CAMTA2 ENCSR660ENW signal 2 3758 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/7c464772-9d52-4672-9eb2-c7092d1ee50e/ENCFF815FGV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CAMTA2 CAMTA2 ENCSR660ENW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR660ENW Signal\ track wgEncodeReg4TfChip_ENCFF815FGV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF665JYB ENCSR540MGS Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years H3K27ac signal 2 3759 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/159f068c-fbab-43b0-9037-5e6138cc7462/ENCFF665JYB.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 42 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540MGS Signal\ track wgEncodeReg4Epigenetics_ENCFF665JYB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF355OOY ENCSR661IKO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1 TRAFD1 peaks 4 3759 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/64e9d4ae-33f2-422f-b3e3-b258f0ee2816/ENCFF355OOY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1 TRAFD1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540PVZ Peak\ track wgEncodeReg4Epigenetics_ENCFF190NIZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF812JIP ENCSR661IKO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1 TRAFD1 ENCSR661IKO signal 2 3760 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/38e7e6a2-0049-4bfb-9744-20450c923d24/ENCFF812JIP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRAFD1 TRAFD1 ENCSR661IKO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR661IKO Signal\ track wgEncodeReg4TfChip_ENCFF812JIP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF924NHH ENCSR540PVZ Signal bigWig Right renal pelvis tissue male embryo 120 days DNase signal 2 3761 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/2aa2b7af-6546-44a3-af21-f294048f0e18/ENCFF924NHH.bigWig\ color 6,218,147\ longLabel Right renal pelvis tissue male embryo 120 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540PVZ Signal\ track wgEncodeReg4Epigenetics_ENCFF924NHH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF080KNR ENCSR661NXJ Peak bigBed 5 Breast epithelium tissue female adult (51 years) CTCF peaks 4 3761 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/86c4140a-bae5-4cdd-80bd-0e982034236d/ENCFF080KNR.bigBed\ labelFields none\ longLabel Breast epithelium tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR661NXJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF080KNR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF681VDD ENCSR540VTN Peak bigBed 5 T-cell male adult 40 years DNase peak 4 3762 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/a2ce316e-4ff8-42c2-a9bc-79c52a9da3c5/ENCFF681VDD.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540VTN Peak\ track wgEncodeReg4Epigenetics_ENCFF681VDD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF271PWB ENCSR661NXJ Signal bigWig Breast epithelium tissue female adult (51 years) CTCF ENCSR661NXJ signal 2 3762 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8d59aa30-9ef6-41ab-9bd1-03d25169eb02/ENCFF271PWB.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (51 years) CTCF ENCSR661NXJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR661NXJ Signal\ track wgEncodeReg4TfChip_ENCFF271PWB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF451BTR ENCSR540VTN Signal bigWig T-cell male adult 40 years DNase signal 2 3763 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/a78c4ad7-8e65-422f-90c4-bfbad564eaf4/ENCFF451BTR.bigWig\ color 6,218,147\ longLabel T-cell male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540VTN Signal\ track wgEncodeReg4Epigenetics_ENCFF451BTR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF460COO ENCSR661PKJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ONECUT2 ONECUT2 peaks 4 3763 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/2c49a4b0-a806-4b43-b93e-a04e446ba7d8/ENCFF460COO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ONECUT2 ONECUT2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR661PKJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF460COO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF889RIE ENCSR540XNK Peak bigBed 5 Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac peak 4 3764 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/203487c1-4b06-4682-a09a-f307fbe3e96f/ENCFF889RIE.bigBed\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540XNK Peak\ track wgEncodeReg4Epigenetics_ENCFF889RIE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF775TCW ENCSR661PKJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ONECUT2 ONECUT2 ENCSR661PKJ signal 2 3764 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/79cfb203-0622-42a3-ac3c-5f195fec6b6c/ENCFF775TCW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ONECUT2 ONECUT2 ENCSR661PKJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR661PKJ Signal\ track wgEncodeReg4TfChip_ENCFF775TCW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF412CXE ENCSR540XNK Signal bigWig Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac signal 2 3765 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/ec6ce74e-ed35-49d7-addb-0803af6000b3/ENCFF412CXE.bigWig\ color 181,145,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR540XNK Signal\ track wgEncodeReg4Epigenetics_ENCFF412CXE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF582GAX ENCSR661XNQ Peak bigBed 5 Gastroesophageal sphincter tissue male adult (54 years) CTCF peaks 4 3765 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d70c8345-50f9-45d1-8e8f-c5b3a92f4ece/ENCFF582GAX.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR661XNQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF582GAX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF575DMG ENCSR541AMF Peak bigBed 5 SK-N-SH CTCF peak 4 3766 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/6d287eda-48ba-463f-a20c-1571ea52da77/ENCFF575DMG.bigBed\ color 0,176,240\ labelFields none\ longLabel SK-N-SH CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541AMF Peak\ track wgEncodeReg4Epigenetics_ENCFF575DMG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF922TZX ENCSR661XNQ Signal bigWig Gastroesophageal sphincter tissue male adult (54 years) CTCF ENCSR661XNQ signal 2 3766 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/5d7072a4-9684-474b-a47d-052cebb8259c/ENCFF922TZX.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (54 years) CTCF ENCSR661XNQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR661XNQ Signal\ track wgEncodeReg4TfChip_ENCFF922TZX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF850MLW ENCSR541AMF Signal bigWig SK-N-SH CTCF signal 2 3767 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/c063a60b-6b24-4582-ae1f-d9f66b71bad2/ENCFF850MLW.bigWig\ color 0,176,240\ longLabel SK-N-SH CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541AMF Signal\ track wgEncodeReg4Epigenetics_ENCFF850MLW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF953UJL ENCSR662EOU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 peaks 4 3767 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1908083b-6204-43ff-952d-3701f8db862a/ENCFF953UJL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR662EOU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF953UJL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF575VDV ENCSR541AVF Peak bigBed 5 Left lung tissue female embryo 117 days DNase peak 4 3768 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/f4bf0a5d-cb59-457c-9bc6-b0db9d24e90f/ENCFF575VDV.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue female embryo 117 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541AVF Peak\ track wgEncodeReg4Epigenetics_ENCFF575VDV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF002SOY ENCSR662EOU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 ENCSR662EOU signal 2 3768 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/32232684-7a3b-4184-823e-a90e2ed1e435/ENCFF002SOY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F1 NR2F1 ENCSR662EOU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR662EOU Signal\ track wgEncodeReg4TfChip_ENCFF002SOY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF931RCZ ENCSR541AVF Signal bigWig Left lung tissue female embryo 117 days DNase signal 2 3769 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/841b5b23-f58a-4591-b344-c0d1f5af4cf1/ENCFF931RCZ.bigWig\ color 6,218,147\ longLabel Left lung tissue female embryo 117 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541AVF Signal\ track wgEncodeReg4Epigenetics_ENCFF931RCZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF507EFS ENCSR663CTC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572 ZNF572 peaks 4 3769 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/0aa2cda9-f5bd-48e8-97c3-0709ca4a0f00/ENCFF507EFS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572 ZNF572 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR663CTC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF507EFS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF536YKD ENCSR541IET Peak bigBed 5 Endothelial cell DNase peak 4 3770 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/d648f185-a8c4-4b8a-8f1f-312823ba34ef/ENCFF536YKD.bigBed\ color 6,218,147\ labelFields none\ longLabel Endothelial cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541IET Peak\ track wgEncodeReg4Epigenetics_ENCFF536YKD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF458ILL ENCSR663CTC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572 ZNF572 ENCSR663CTC signal 2 3770 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/52d8d840-51c2-49d8-8a6c-45d320c0236b/ENCFF458ILL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF572 ZNF572 ENCSR663CTC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR663CTC Signal\ track wgEncodeReg4TfChip_ENCFF458ILL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF706PFS ENCSR541IET Signal bigWig Endothelial cell DNase signal 2 3771 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/f4358f70-d2d5-41de-aca5-ccfd2a7c6ddf/ENCFF706PFS.bigWig\ color 6,218,147\ longLabel Endothelial cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541IET Signal\ track wgEncodeReg4Epigenetics_ENCFF706PFS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF203SWY ENCSR663WAR Peak bigBed 5 H1 REST peaks 4 3771 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/da6949ad-5e86-4a7d-a3be-5c74b76c110d/ENCFF203SWY.bigBed\ labelFields none\ longLabel H1 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR663WAR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF203SWY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF188MFO ENCSR541JMK Peak bigBed 5 Adrenal gland tissue female adult 47 years DNase peak 4 3772 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/4acbde8c-45ce-4bb1-bbf2-edab4ab51c51/ENCFF188MFO.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue female adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541JMK Peak\ track wgEncodeReg4Epigenetics_ENCFF188MFO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF225HWX ENCSR663WAR Signal bigWig H1 REST ENCSR663WAR signal 2 3772 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/97f2d4aa-52a6-41a9-a968-ba819bed7b01/ENCFF225HWX.bigWig\ color 118,158,101\ longLabel H1 REST ENCSR663WAR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR663WAR Signal\ track wgEncodeReg4TfChip_ENCFF225HWX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF231WCT ENCSR541JMK Signal bigWig Adrenal gland tissue female adult 47 years DNase signal 2 3773 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/e62f9f62-2e4b-4277-bb5c-c352695e5380/ENCFF231WCT.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue female adult 47 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541JMK Signal\ track wgEncodeReg4Epigenetics_ENCFF231WCT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF144ZFZ ENCSR663ZZZ Peak bigBed 5 MCF-7 MNT peaks 4 3773 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/e77b5e3f-ba8c-4406-8506-0c93bd8f1e43/ENCFF144ZFZ.bigBed\ labelFields none\ longLabel MCF-7 MNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR663ZZZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF144ZFZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF907VKX ENCSR541KFY Peak bigBed 5 WTC11 ATAC peak 4 3774 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/41dedd32-e490-4b7e-8943-0858bb4267d4/ENCFF907VKX.bigBed\ color 2,199,185\ longLabel WTC11 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541KFY Peak\ track wgEncodeReg4Epigenetics_ENCFF907VKX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF844DDB ENCSR663ZZZ Signal bigWig MCF-7 MNT ENCSR663ZZZ signal 2 3774 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/33790909-f559-47e1-936f-2ad49233166c/ENCFF844DDB.bigWig\ color 65,171,173\ longLabel MCF-7 MNT ENCSR663ZZZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR663ZZZ Signal\ track wgEncodeReg4TfChip_ENCFF844DDB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF056MYW ENCSR541KFY Signal bigWig WTC11 ATAC signal 2 3775 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/00679925-7af5-4c01-911b-53be335daddf/ENCFF056MYW.bigWig\ color 2,199,185\ longLabel WTC11 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541KFY Signal\ track wgEncodeReg4Epigenetics_ENCFF056MYW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF537QZW ENCSR664AOA Peak bigBed 5 K562 TRIM25 peaks 4 3775 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ecb68545-fac7-418e-bf83-867f95e6344d/ENCFF537QZW.bigBed\ labelFields none\ longLabel K562 TRIM25 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR664AOA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF537QZW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF699PQP ENCSR541PLO Peak bigBed 5 Multiple sclerosis naive B cell H3K27ac peak 4 3776 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/8759821e-72b8-4186-b60c-4aceb336e06a/ENCFF699PQP.bigBed\ color 181,145,0\ longLabel Multiple sclerosis naive B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541PLO Peak\ track wgEncodeReg4Epigenetics_ENCFF699PQP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF628SQS ENCSR664AOA Signal bigWig K562 TRIM25 ENCSR664AOA signal 2 3776 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4b01a2df-86bf-4e23-82c1-fc7464376cf7/ENCFF628SQS.bigWig\ color 254,75,173\ longLabel K562 TRIM25 ENCSR664AOA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR664AOA Signal\ track wgEncodeReg4TfChip_ENCFF628SQS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF256LPT ENCSR541PLO Signal bigWig Multiple sclerosis naive B cell H3K27ac signal 2 3777 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/402440df-28b3-4b99-9026-0f3e8e913177/ENCFF256LPT.bigWig\ color 181,145,0\ longLabel Multiple sclerosis naive B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541PLO Signal\ track wgEncodeReg4Epigenetics_ENCFF256LPT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF176TBX ENCSR665UFC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 peaks 4 3777 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/25e60edb-67c5-4c72-b4ed-b29b0fa6cadf/ENCFF176TBX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR665UFC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF176TBX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF996KIC ENCSR541PUY Peak bigBed 5 T-cell male adult 30 years DNase peak 4 3778 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/9a940361-33e3-477a-9d5a-cbf8157d32d8/ENCFF996KIC.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541PUY Peak\ track wgEncodeReg4Epigenetics_ENCFF996KIC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF622OOZ ENCSR665UFC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 ENCSR665UFC signal 2 3778 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8d513b93-7e04-4c34-8892-9d7da84a66db/ENCFF622OOZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 ENCSR665UFC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR665UFC Signal\ track wgEncodeReg4TfChip_ENCFF622OOZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF565PXG ENCSR541PUY Signal bigWig T-cell male adult 30 years DNase signal 2 3779 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/1152e1a6-1b7f-4e05-bd01-292ce0ca31cc/ENCFF565PXG.bigWig\ color 6,218,147\ longLabel T-cell male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541PUY Signal\ track wgEncodeReg4Epigenetics_ENCFF565PXG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF092NXX ENCSR666JEF Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (85 years) CTCF peaks 4 3779 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/16bf114b-befe-48ef-99cb-52d3eb29f2d0/ENCFF092NXX.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (85 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR666JEF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF092NXX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF594FDW ENCSR541UPY Peak bigBed 5 Thymus tissue female embryo 98 days DNase peak 4 3780 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/15740581-fb99-45ef-a5de-3e28687cbbcc/ENCFF594FDW.bigBed\ color 6,218,147\ labelFields none\ longLabel Thymus tissue female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541UPY Peak\ track wgEncodeReg4Epigenetics_ENCFF594FDW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF263VJQ ENCSR666JEF Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (85 years) CTCF ENCSR666JEF signal 2 3780 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ba55ce06-0fa8-47e0-8b08-ba580d0676fc/ENCFF263VJQ.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (85 years) CTCF ENCSR666JEF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR666JEF Signal\ track wgEncodeReg4TfChip_ENCFF263VJQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF845WGL ENCSR541UPY Signal bigWig Thymus tissue female embryo 98 days DNase signal 2 3781 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/13123871-b360-48f6-9420-4ea714d00532/ENCFF845WGL.bigWig\ color 6,218,147\ longLabel Thymus tissue female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541UPY Signal\ track wgEncodeReg4Epigenetics_ENCFF845WGL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF802TPU ENCSR666QNP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD3 TEAD3 peaks 4 3781 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2018/11/19/e515d7b4-91aa-48ba-b390-5059646170ac/ENCFF802TPU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD3 TEAD3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR666QNP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF802TPU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF119WIF ENCSR541ZOU Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase peak 4 3782 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/7b84c430-290a-475f-9fe9-81b1aa87353a/ENCFF119WIF.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541ZOU Peak\ track wgEncodeReg4Epigenetics_ENCFF119WIF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF464BRV ENCSR666QNP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD3 TEAD3 ENCSR666QNP signal 2 3782 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2016/11/07/455a2039-7404-4c75-981d-e12812706272/ENCFF464BRV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD3 TEAD3 ENCSR666QNP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR666QNP Signal\ track wgEncodeReg4TfChip_ENCFF464BRV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF336XYP ENCSR541ZOU Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase signal 2 3783 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/977d1da6-f7f0-4b2d-81bf-4ad2341880fb/ENCFF336XYP.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR541ZOU Signal\ track wgEncodeReg4Epigenetics_ENCFF336XYP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF193UMS ENCSR667UWT Peak bigBed 5 Transverse colon tissue male adult (37 years) POLR2A peaks 4 3783 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/2da8d5ac-26fd-4c7a-97ee-7899ef372d5c/ENCFF193UMS.bigBed\ labelFields none\ longLabel Transverse colon tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR667UWT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF193UMS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF878EHT ENCSR542GKI Peak bigBed 5 T-helper 9 cell female adult 25 years DNase peak 4 3784 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/1655443a-2609-4a60-91f2-0d3e5455cc81/ENCFF878EHT.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 9 cell female adult 25 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR542GKI Peak\ track wgEncodeReg4Epigenetics_ENCFF878EHT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF431NEB ENCSR667UWT Signal bigWig Transverse colon tissue male adult (37 years) POLR2A ENCSR667UWT signal 2 3784 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/384e4b2c-8349-4c5b-b8e0-90a362af02ed/ENCFF431NEB.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (37 years) POLR2A ENCSR667UWT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR667UWT Signal\ track wgEncodeReg4TfChip_ENCFF431NEB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF983OAW ENCSR542GKI Signal bigWig T-helper 9 cell female adult 25 years DNase signal 2 3785 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a3bcd221-e776-496e-9420-8e2810a46019/ENCFF983OAW.bigWig\ color 6,218,147\ longLabel T-helper 9 cell female adult 25 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR542GKI Signal\ track wgEncodeReg4Epigenetics_ENCFF983OAW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF124KVL ENCSR667WDR Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 peaks 4 3785 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/12/04f81257-97f2-4ffe-9ea9-e51ef9b7b31f/ENCFF124KVL.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR667WDR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF124KVL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF730GBE ENCSR542RNG Peak bigBed 5 Adrenal gland tissue male adult 26 years ATAC peak 4 3786 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/a84eb3e5-457a-40e4-828f-5b6a55bc4424/ENCFF730GBE.bigBed\ color 2,199,185\ longLabel Adrenal gland tissue male adult 26 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR542RNG Peak\ track wgEncodeReg4Epigenetics_ENCFF730GBE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF850YOR ENCSR667WDR Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 ENCSR667WDR signal 2 3786 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/12/4bfea305-5e3f-40b8-9b40-9611f4069635/ENCFF850YOR.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens FOXJ3 FOXJ3 ENCSR667WDR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR667WDR Signal\ track wgEncodeReg4TfChip_ENCFF850YOR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF413EZP ENCSR542RNG Signal bigWig Adrenal gland tissue male adult 26 years ATAC signal 2 3787 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/d67900a8-f228-4a55-8bdd-566a2b590758/ENCFF413EZP.bigWig\ color 2,199,185\ longLabel Adrenal gland tissue male adult 26 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR542RNG Signal\ track wgEncodeReg4Epigenetics_ENCFF413EZP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF012WJQ ENCSR668BTN Peak bigBed 5 Thoracic aorta tissue male adult (37 years) CTCF peaks 4 3787 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f29c2bc2-468f-42ed-be29-3565a24f0d68/ENCFF012WJQ.bigBed\ labelFields none\ longLabel Thoracic aorta tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR668BTN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF012WJQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF355EOZ ENCSR542UWN Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak 4 3788 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/f53c37b4-ec41-4147-aa9d-5ed213d527b1/ENCFF355EOZ.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR542UWN Peak\ track wgEncodeReg4Epigenetics_ENCFF355EOZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF798COD ENCSR668BTN Signal bigWig Thoracic aorta tissue male adult (37 years) CTCF ENCSR668BTN signal 2 3788 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/00b59748-1f27-4811-acbf-86f8248d36fb/ENCFF798COD.bigWig\ color 255,37,41\ longLabel Thoracic aorta tissue male adult (37 years) CTCF ENCSR668BTN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR668BTN Signal\ track wgEncodeReg4TfChip_ENCFF798COD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF246BAU ENCSR542UWN Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal 2 3789 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/6fb0f98b-1d9a-4b9e-91b0-c730c6a7bd98/ENCFF246BAU.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR542UWN Signal\ track wgEncodeReg4Epigenetics_ENCFF246BAU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF906MQV ENCSR668HOP Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF580 ZNF580 peaks 4 3789 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/3158655c-71d5-4830-991e-1d149db5c2d6/ENCFF906MQV.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF580 ZNF580 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR668HOP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF906MQV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF923OLB ENCSR543CPW Peak bigBed 5 Small intestine tissue male adult 34 years H3K27ac peak 4 3790 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/84b609ae-742f-4a1d-9aaa-8ddac0d8059b/ENCFF923OLB.bigBed\ color 181,145,0\ longLabel Small intestine tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR543CPW Peak\ track wgEncodeReg4Epigenetics_ENCFF923OLB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF310FUU ENCSR668HOP Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF580 ZNF580 ENCSR668HOP signal 2 3790 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/e43282e9-ab31-4e7a-bff9-30565a1fa4e3/ENCFF310FUU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF580 ZNF580 ENCSR668HOP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR668HOP Signal\ track wgEncodeReg4TfChip_ENCFF310FUU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF359DGK ENCSR543CPW Signal bigWig Small intestine tissue male adult 34 years H3K27ac signal 2 3791 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b5bd2c3d-babc-4f38-9289-d48a0428f09e/ENCFF359DGK.bigWig\ color 181,145,0\ longLabel Small intestine tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR543CPW Signal\ track wgEncodeReg4Epigenetics_ENCFF359DGK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF703HVX ENCSR669NFS Peak bigBed 5 K562 ARNT peaks 4 3791 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/4289928e-f75b-46fd-8c80-353c89f2ba1d/ENCFF703HVX.bigBed\ labelFields none\ longLabel K562 ARNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR669NFS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF703HVX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF621YUV ENCSR543YPH Peak bigBed 5 Left kidney tissue male embryo 115 days DNase peak 4 3792 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/eb1c9bf6-add6-4cc0-a754-9f95892641c4/ENCFF621YUV.bigBed\ color 6,218,147\ labelFields none\ longLabel Left kidney tissue male embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR543YPH Peak\ track wgEncodeReg4Epigenetics_ENCFF621YUV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF300RKC ENCSR669NFS Signal bigWig K562 ARNT ENCSR669NFS signal 2 3792 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/6ba01791-3334-4ac1-b48e-42826b39cbf1/ENCFF300RKC.bigWig\ color 254,75,173\ longLabel K562 ARNT ENCSR669NFS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR669NFS Signal\ track wgEncodeReg4TfChip_ENCFF300RKC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF490DLI ENCSR543YPH Signal bigWig Left kidney tissue male embryo 115 days DNase signal 2 3793 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/880c415a-2cda-4063-9d55-53a4d95c3cd4/ENCFF490DLI.bigWig\ color 6,218,147\ longLabel Left kidney tissue male embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR543YPH Signal\ track wgEncodeReg4Epigenetics_ENCFF490DLI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF408QPR ENCSR670FDA Peak bigBed 5 K562 NFATC3 peaks 4 3793 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/a4c47365-dba9-4916-9b3d-4c4b8657fccc/ENCFF408QPR.bigBed\ labelFields none\ longLabel K562 NFATC3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR670FDA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF408QPR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF185CKY ENCSR544APK Peak bigBed 5 Heart left ventricle tissue female adult 53 years CTCF peak 4 3794 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/515aa866-acc6-4e78-840f-80359972dbd7/ENCFF185CKY.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart left ventricle tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR670UEX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF170JWO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF327KFZ ENCSR545ADK Peak bigBed 5 Uterus tissue female adult 59 years DNase peak 4 3798 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b800d880-3e20-4f99-92fa-dada8ba1d40b/ENCFF327KFZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Uterus tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545ADK Peak\ track wgEncodeReg4Epigenetics_ENCFF327KFZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF542TNG ENCSR670UEX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF710 ZNF710 ENCSR670UEX signal 2 3798 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7c62b4cd-c526-4f97-971b-857ffe4168a1/ENCFF542TNG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF710 ZNF710 ENCSR670UEX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR670UEX Signal\ track wgEncodeReg4TfChip_ENCFF542TNG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF739NWF ENCSR545ADK Signal bigWig Uterus tissue female adult 59 years DNase signal 2 3799 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/1bc6d3bd-6033-41cd-b830-4bddfcaab752/ENCFF739NWF.bigWig\ color 6,218,147\ longLabel Uterus tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545ADK Signal\ track wgEncodeReg4Epigenetics_ENCFF739NWF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF247MSU ENCSR670YPQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMAP1 DMAP1 peaks 4 3799 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/932fc375-a1c0-4ecb-9f2e-c825e330e9c1/ENCFF247MSU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMAP1 DMAP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR670YPQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF247MSU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF908BIW ENCSR545KQR Peak bigBed 5 Placenta tissue female embryo 105 days DNase peak 4 3800 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/bb852b62-19d0-42fc-bb11-3d303ee87c30/ENCFF908BIW.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545KQR Peak\ track wgEncodeReg4Epigenetics_ENCFF908BIW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF792NKJ ENCSR670YPQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMAP1 DMAP1 ENCSR670YPQ signal 2 3800 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/e0ef7507-16ba-44d1-8d39-af903f1915d6/ENCFF792NKJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DMAP1 DMAP1 ENCSR670YPQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR670YPQ Signal\ track wgEncodeReg4TfChip_ENCFF792NKJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF954ZUR ENCSR545KQR Signal bigWig Placenta tissue female embryo 105 days DNase signal 2 3801 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/00d25e27-bf00-4560-b9e6-18112cd2538b/ENCFF954ZUR.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545KQR Signal\ track wgEncodeReg4Epigenetics_ENCFF954ZUR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF314WLE ENCSR671GFC Peak bigBed 5 K562 stably expressing TAF7 TAF7 peaks 4 3801 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4706ad5e-31fb-4725-8d25-0798ba023ac3/ENCFF314WLE.bigBed\ labelFields none\ longLabel K562 stably expressing TAF7 TAF7 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545UJP Peak\ track wgEncodeReg4Epigenetics_ENCFF086QEA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF439JKU ENCSR671GFC Signal bigWig K562 stably expressing TAF7 TAF7 ENCSR671GFC signal 2 3802 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6f4f0edb-15c5-4b9f-863f-800f1a345081/ENCFF439JKU.bigWig\ color 254,75,173\ longLabel K562 stably expressing TAF7 TAF7 ENCSR671GFC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR671GFC Signal\ track wgEncodeReg4TfChip_ENCFF439JKU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF116IVX ENCSR545UJP Signal bigWig Stimulated activated CD8-positive, alpha-beta T cell nuclear fraction male adult 21 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC signal 2 3803 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/03/00ef301c-aada-4e60-8683-fcf04d2c4d6a/ENCFF116IVX.bigWig\ color 2,199,185\ longLabel Stimulated activated CD8-positive, alpha-beta T cell nuclear fraction male adult 21 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545UJP Signal\ track wgEncodeReg4Epigenetics_ENCFF116IVX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF890RRF ENCSR672BSA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETS1 ETS1 peaks 4 3803 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/dcc02b78-0d5c-474a-9a22-6d0d8db7fb9a/ENCFF890RRF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETS1 ETS1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR672BSA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF890RRF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF259KRO ENCSR545ZQT Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K4me3 peak 4 3804 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/107eb8ab-7f25-4291-8acc-ec33af6c13fc/ENCFF259KRO.bigBed\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545ZQT Peak\ track wgEncodeReg4Epigenetics_ENCFF259KRO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF022WFN ENCSR672BSA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETS1 ETS1 ENCSR672BSA signal 2 3804 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/9c4d5633-0059-4194-9c15-651f0ed80797/ENCFF022WFN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETS1 ETS1 ENCSR672BSA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR672BSA Signal\ track wgEncodeReg4TfChip_ENCFF022WFN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF862YHY ENCSR545ZQT Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K4me3 signal 2 3805 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/643ac10b-ad9d-4b1d-ba9c-b0d4ab230696/ENCFF862YHY.bigWig\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 85 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR545ZQT Signal\ track wgEncodeReg4Epigenetics_ENCFF862YHY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF738UDK ENCSR673GDQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF441 ZNF441 peaks 4 3805 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/ef42e65a-64e7-4b0e-a9f5-2008e2744aa2/ENCFF738UDK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF441 ZNF441 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR673GDQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF738UDK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF349WKE ENCSR546SDM Peak bigBed 5 CD4-positive, alpha-beta T cell H3K27ac peak 4 3806 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/dd21c56a-9305-42ea-ac42-0564c777d632/ENCFF349WKE.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR546SDM Peak\ track wgEncodeReg4Epigenetics_ENCFF349WKE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF278MZE ENCSR673GDQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF441 ZNF441 ENCSR673GDQ signal 2 3806 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/44a83bbf-f6ee-4dc9-a375-53e61efe7c67/ENCFF278MZE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF441 ZNF441 ENCSR673GDQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR673GDQ Signal\ track wgEncodeReg4TfChip_ENCFF278MZE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF892JDN ENCSR546SDM Signal bigWig CD4-positive, alpha-beta T cell H3K27ac signal 2 3807 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/54af4a63-e54d-4f83-87e2-38a7ec4f32a5/ENCFF892JDN.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR546SDM Signal\ track wgEncodeReg4Epigenetics_ENCFF892JDN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF555YRB ENCSR673SGK Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL6B BCL6B peaks 4 3807 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/c80b3158-4a4c-42bf-95f8-5344efb09c3c/ENCFF555YRB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL6B BCL6B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR673SGK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF555YRB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF820ZVE ENCSR546YQN Peak bigBed 5 CD8-positive, alpha-beta memory T cell H3K27ac peak 4 3808 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/628dd2a2-9f7e-45a9-a759-6acbc1274cf9/ENCFF820ZVE.bigBed\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR546YQN Peak\ track wgEncodeReg4Epigenetics_ENCFF820ZVE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF340RHQ ENCSR673SGK Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL6B BCL6B ENCSR673SGK signal 2 3808 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/3fed2703-bf68-4052-9756-bb42f964533e/ENCFF340RHQ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL6B BCL6B ENCSR673SGK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR673SGK Signal\ track wgEncodeReg4TfChip_ENCFF340RHQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF334PSV ENCSR546YQN Signal bigWig CD8-positive, alpha-beta memory T cell H3K27ac signal 2 3809 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/63830257-fbea-41ef-8fe9-d03fa341cd94/ENCFF334PSV.bigWig\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR546YQN Signal\ track wgEncodeReg4Epigenetics_ENCFF334PSV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF504HCM ENCSR674IEI Peak bigBed 5 Upper lobe of left lung tissue male adult (37 years) POLR2A peaks 4 3809 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/c3973d9c-5e2f-4471-8616-933c7ba88815/ENCFF504HCM.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR674IEI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF504HCM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF845YUT ENCSR548DDS Peak bigBed 5 Ovary tissue female adult 51 years CTCF peak 4 3810 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d15b7d22-d42b-41b8-8e00-be1c7dc8f486/ENCFF845YUT.bigBed\ color 0,176,240\ labelFields none\ longLabel Ovary tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548DDS Peak\ track wgEncodeReg4Epigenetics_ENCFF845YUT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF318GSA ENCSR674IEI Signal bigWig Upper lobe of left lung tissue male adult (37 years) POLR2A ENCSR674IEI signal 2 3810 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/06d07dd1-7524-47c2-90cf-991284fdcbbb/ENCFF318GSA.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (37 years) POLR2A ENCSR674IEI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR674IEI Signal\ track wgEncodeReg4TfChip_ENCFF318GSA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF666MLU ENCSR548DDS Signal bigWig Ovary tissue female adult 51 years CTCF signal 2 3811 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/6ab8f72a-252a-4fe4-b75f-61414eac5456/ENCFF666MLU.bigWig\ color 0,176,240\ longLabel Ovary tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548DDS Signal\ track wgEncodeReg4Epigenetics_ENCFF666MLU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF955JQT ENCSR674SCQ Peak bigBed 5 K562 stably expressing ZNF354B ZNF354B peaks 4 3811 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0252d4f3-6ff6-42c9-8c65-a6bd3d3ad4ef/ENCFF955JQT.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF354B ZNF354B peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548PZS Peak\ track wgEncodeReg4Epigenetics_ENCFF759OFQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF018YBN ENCSR678KUJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91 ZFP91 ENCSR678KUJ signal 2 3820 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/b712f4e0-c430-41fb-a29c-b069cfad763d/ENCFF018YBN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91 ZFP91 ENCSR678KUJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR678KUJ Signal\ track wgEncodeReg4TfChip_ENCFF018YBN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF024WWN ENCSR548PZS Signal bigWig OCI-LY3 H3K4me3 signal 2 3821 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/5ad79ddc-b05d-48dc-9a73-946ba88a1dda/ENCFF024WWN.bigWig\ color 255,0,0\ longLabel OCI-LY3 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548PZS Signal\ track wgEncodeReg4Epigenetics_ENCFF024WWN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF347OUM ENCSR679STZ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF792 ZNF792 peaks 4 3821 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/73333dbb-263d-4533-b607-96240679aaa4/ENCFF347OUM.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF792 ZNF792 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548QCP Peak\ track wgEncodeReg4Epigenetics_ENCFF217BRO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF134CTS ENCSR679STZ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF792 ZNF792 ENCSR679STZ signal 2 3822 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/894a9eb8-9047-47bc-85ac-705efd70eccd/ENCFF134CTS.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF792 ZNF792 ENCSR679STZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR679STZ Signal\ track wgEncodeReg4TfChip_ENCFF134CTS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF796DRU ENCSR548QCP Signal bigWig Sigmoid colon tissue male adult 37 years ATAC signal 2 3823 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/524ee65c-42bd-4fcb-87dc-d3f01193b2e9/ENCFF796DRU.bigWig\ color 2,199,185\ longLabel Sigmoid colon tissue male adult 37 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548QCP Signal\ track wgEncodeReg4Epigenetics_ENCFF796DRU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF245KNK ENCSR680OFU Peak bigBed 5 HeLa-S3 EP300 peaks 4 3823 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d5c6d20b-29ac-468a-abca-06e57333cebb/ENCFF245KNK.bigBed\ labelFields none\ longLabel HeLa-S3 EP300 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548QRE Peak\ track wgEncodeReg4Epigenetics_ENCFF337FQE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF497VNS ENCSR680OFU Signal bigWig HeLa-S3 EP300 ENCSR680OFU signal 2 3824 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d7ef6fdb-383c-428b-abdc-dd61c55e60fc/ENCFF497VNS.bigWig\ color 186,111,165\ longLabel HeLa-S3 EP300 ENCSR680OFU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR680OFU Signal\ track wgEncodeReg4TfChip_ENCFF497VNS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF889QTE ENCSR548QRE Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 81 years H3K4me3 signal 2 3825 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/28/d10dc4b5-833a-43d5-ba91-121120491e80/ENCFF889QTE.bigWig\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR548QRE Signal\ track wgEncodeReg4Epigenetics_ENCFF889QTE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF918AID ENCSR680UQE Peak bigBed 5 GM12878 IKZF2 peaks 4 3825 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/b0544b77-dcee-4c5c-9d46-b1d693e7df69/ENCFF918AID.bigBed\ labelFields none\ longLabel GM12878 IKZF2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR549BTS Peak\ track wgEncodeReg4Epigenetics_ENCFF074FMZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF816IYS ENCSR680UQE Signal bigWig GM12878 IKZF2 ENCSR680UQE signal 2 3826 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/d2da3a61-f054-48fa-bac4-2b86d0e8d7fa/ENCFF816IYS.bigWig\ color 254,75,173\ longLabel GM12878 IKZF2 ENCSR680UQE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR680UQE Signal\ track wgEncodeReg4TfChip_ENCFF816IYS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF857KTM ENCSR549BTS Signal bigWig WTC11 H3K4me3 signal 2 3827 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/fc47e223-46c1-40de-89df-639b306f4837/ENCFF857KTM.bigWig\ color 255,0,0\ longLabel WTC11 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR549BTS Signal\ track wgEncodeReg4Epigenetics_ENCFF857KTM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF338KEP ENCSR680WMF Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 3827 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/c08c189b-f96f-474f-b937-cd57af9d281a/ENCFF338KEP.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR549TXG Peak\ track wgEncodeReg4Epigenetics_ENCFF166PKA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF343CFV ENCSR681WHQ Signal bigWig HepG2 ETS1 ENCSR681WHQ signal 2 3834 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/c8fc0530-758b-41a0-8516-3538f1655de0/ENCFF343CFV.bigWig\ color 137,152,82\ longLabel HepG2 ETS1 ENCSR681WHQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR681WHQ Signal\ track wgEncodeReg4TfChip_ENCFF343CFV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF429ZQN ENCSR549TXG Signal bigWig Thoracic aorta tissue male adult 37 years CTCF signal 2 3835 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/83643ed7-e475-466b-8cf8-b92ac2fb7419/ENCFF429ZQN.bigWig\ color 0,176,240\ longLabel Thoracic aorta tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR549TXG Signal\ track wgEncodeReg4Epigenetics_ENCFF429ZQN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF818VAB ENCSR684NJD Peak bigBed 5 Stomach tissue male adult (54 years) EP300 peaks 4 3835 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/a89326fb-67b0-4851-8a05-97f68a593c8a/ENCFF818VAB.bigBed\ labelFields none\ longLabel Stomach tissue male adult (54 years) EP300 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR550UWM Peak\ track wgEncodeReg4Epigenetics_ENCFF686GEY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF700PHX ENCSR684PGO Signal bigWig Uterus tissue female adult (53 years) CTCF ENCSR684PGO signal 2 3838 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/d3e47f8b-ead6-4624-838d-9e8b24868494/ENCFF700PHX.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (53 years) CTCF ENCSR684PGO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR684PGO Signal\ track wgEncodeReg4TfChip_ENCFF700PHX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF243WKL ENCSR550UWM Signal bigWig Renal cortex interstitium tissue male embryo 97 days DNase signal 2 3839 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4fe44c76-2085-4f5f-9846-4ad859900197/ENCFF243WKL.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR550UWM Signal\ track wgEncodeReg4Epigenetics_ENCFF243WKL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF476KCM ENCSR686BQM Peak bigBed 5 A549 EP300 peaks 4 3839 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/31/cf3d27c8-ce65-45ab-9bb9-295e38f6ae85/ENCFF476KCM.bigBed\ labelFields none\ longLabel A549 EP300 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR550WUX Peak\ track wgEncodeReg4Epigenetics_ENCFF171SGM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF120JDJ ENCSR686BQM Signal bigWig A549 EP300 ENCSR686BQM signal 2 3840 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/31/7b92ed94-23c8-4a74-bbcb-e452205d89b4/ENCFF120JDJ.bigWig\ color 130,163,45\ longLabel A549 EP300 ENCSR686BQM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR686BQM Signal\ track wgEncodeReg4TfChip_ENCFF120JDJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF900HNB ENCSR550WUX Signal bigWig Lung tissue male child 3 years H3K27ac signal 2 3841 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/ab74dc85-fc38-4c88-8a67-9cec47fe4f5e/ENCFF900HNB.bigWig\ color 181,145,0\ longLabel Lung tissue male child 3 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR550WUX Signal\ track wgEncodeReg4Epigenetics_ENCFF900HNB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF196BUB ENCSR686EYO Peak bigBed 5 K562 KHSRP peaks 4 3841 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/fbe9fb9e-b7d7-4fc6-9455-1e0af5fe87a3/ENCFF196BUB.bigBed\ labelFields none\ longLabel K562 KHSRP peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR551CSY Peak\ track wgEncodeReg4Epigenetics_ENCFF706NIP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF424AYZ ENCSR686EYO Signal bigWig K562 KHSRP ENCSR686EYO signal 2 3842 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/4eed823e-e337-4d0f-bb77-4ee23b1e2db2/ENCFF424AYZ.bigWig\ color 254,75,173\ longLabel K562 KHSRP ENCSR686EYO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR686EYO Signal\ track wgEncodeReg4TfChip_ENCFF424AYZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF650BOQ ENCSR551CSY Signal bigWig Mesenteric fat pad tissue male adult 26 years ATAC signal 2 3843 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/0977a1e1-cf38-4a22-ae77-bbe97a0ab93a/ENCFF650BOQ.bigWig\ color 2,199,185\ longLabel Mesenteric fat pad tissue male adult 26 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR551CSY Signal\ track wgEncodeReg4Epigenetics_ENCFF650BOQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF105ZOX ENCSR686SOV Peak bigBed 5 MCF-7 NCOA3 peaks 4 3843 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/bb4a1d05-5ad0-49bb-a61b-cd5ac5b8b8c1/ENCFF105ZOX.bigBed\ labelFields none\ longLabel MCF-7 NCOA3 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR551QXE Peak\ track wgEncodeReg4Epigenetics_ENCFF041MHX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF176OBD ENCSR686SOV Signal bigWig MCF-7 NCOA3 ENCSR686SOV signal 2 3844 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/8923a97b-efaa-4907-b664-1cd674bf367c/ENCFF176OBD.bigWig\ color 65,171,173\ longLabel MCF-7 NCOA3 ENCSR686SOV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR686SOV Signal\ track wgEncodeReg4TfChip_ENCFF176OBD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF941YCV ENCSR551QXE Signal bigWig Substantia nigra tissue female adult 75 years H3K4me3 signal 2 3845 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e23284d2-9e3f-4e6f-b6c0-106bf4998766/ENCFF941YCV.bigWig\ color 255,0,0\ longLabel Substantia nigra tissue female adult 75 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR551QXE Signal\ track wgEncodeReg4Epigenetics_ENCFF941YCV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF128ALM ENCSR687APM Peak bigBed 5 Body of pancreas tissue male adult (54 years) CTCF peaks 4 3845 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/3bdef2f4-1897-4885-acea-4f45a5a7c9e8/ENCFF128ALM.bigBed\ labelFields none\ longLabel Body of pancreas tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR552TPH Peak\ track wgEncodeReg4Epigenetics_ENCFF101JTK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF543LIT ENCSR689VEF Signal bigWig Tibial nerve tissue male adult (54 years) CTCF ENCSR689VEF signal 2 3850 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/699fa1a7-784b-424b-893e-af8ffb18079e/ENCFF543LIT.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue male adult (54 years) CTCF ENCSR689VEF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR689VEF Signal\ track wgEncodeReg4TfChip_ENCFF543LIT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF609DSZ ENCSR552TPH Signal bigWig T-cell female adult 53 years DNase signal 2 3851 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/824e8f96-7232-49fc-8c57-9a90e0fcbb73/ENCFF609DSZ.bigWig\ color 6,218,147\ longLabel T-cell female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR552TPH Signal\ track wgEncodeReg4Epigenetics_ENCFF609DSZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF602LWH ENCSR689YFA Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF146 ZNF146 peaks 4 3851 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/322b092e-7ab0-4eb0-a294-bfde79203a57/ENCFF602LWH.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF146 ZNF146 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR690GUG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF620FYM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF225XIX ENCSR553QIO Peak bigBed 5 CD8-positive, alpha-beta memory T cell male adult 30 years H3K27ac peak 4 3856 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/272155b3-15bd-44a8-bb26-70a353c1469e/ENCFF225XIX.bigBed\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell male adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR553QIO Peak\ track wgEncodeReg4Epigenetics_ENCFF225XIX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF925DHZ ENCSR690GUG Signal bigWig K562 U2AF1 ENCSR690GUG signal 2 3856 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ac9e0761-529b-42c2-a4f9-b6a804cd478f/ENCFF925DHZ.bigWig\ color 254,75,173\ longLabel K562 U2AF1 ENCSR690GUG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR690GUG Signal\ track wgEncodeReg4TfChip_ENCFF925DHZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF938RJM ENCSR553QIO Signal bigWig CD8-positive, alpha-beta memory T cell male adult 30 years H3K27ac signal 2 3857 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/21200ba5-d4df-4049-b76a-d643cdf4c987/ENCFF938RJM.bigWig\ color 181,145,0\ longLabel CD8-positive, alpha-beta memory T cell male adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR553QIO Signal\ track wgEncodeReg4Epigenetics_ENCFF938RJM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF955VIQ ENCSR691CPM Peak bigBed 5 Spleen tissue female adult (51 years) POLR2A peaks 4 3857 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/d2c84f81-8e20-4028-a0c9-0acec3fd894f/ENCFF955VIQ.bigBed\ labelFields none\ longLabel Spleen tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR553WJB Peak\ track wgEncodeReg4Epigenetics_ENCFF844RTO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF433NCO ENCSR691CPM Signal bigWig Spleen tissue female adult (51 years) POLR2A ENCSR691CPM signal 2 3858 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/da4d41da-49d3-4ef9-aa20-b80e1bf44896/ENCFF433NCO.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (51 years) POLR2A ENCSR691CPM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR691CPM Signal\ track wgEncodeReg4TfChip_ENCFF433NCO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF310DYF ENCSR553WJB Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase signal 2 3859 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/245a0a84-0c03-4f78-ac3f-e5d7701d0205/ENCFF310DYF.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-2 for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR553WJB Signal\ track wgEncodeReg4Epigenetics_ENCFF310DYF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF778UKJ ENCSR691TXI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF610 ZNF610 peaks 4 3859 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/9481cb73-45de-4c75-b84d-67be276a81cd/ENCFF778UKJ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF610 ZNF610 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR691TXI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF778UKJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF206RAA ENCSR554HDT Peak bigBed 5 Middle frontal area 46 tissue male adult 84 years H3K27ac peak 4 3860 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/18/5d357f75-7977-4f24-8eaa-e2553773f6b6/ENCFF206RAA.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 84 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR554HDT Peak\ track wgEncodeReg4Epigenetics_ENCFF206RAA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF347ZUP ENCSR691TXI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF610 ZNF610 ENCSR691TXI signal 2 3860 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/83a85ed5-a8fe-4ba1-9237-df993b93b027/ENCFF347ZUP.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF610 ZNF610 ENCSR691TXI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR691TXI Signal\ track wgEncodeReg4TfChip_ENCFF347ZUP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF646KVN ENCSR554HDT Signal bigWig Middle frontal area 46 tissue male adult 84 years H3K27ac signal 2 3861 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/18/fb9499ac-e988-4894-af43-8e2c86dd269b/ENCFF646KVN.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 84 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR554HDT Signal\ track wgEncodeReg4Epigenetics_ENCFF646KVN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF103PKS ENCSR692GFR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KMT2A KMT2A peaks 4 3861 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/0b9dc05f-1bb3-43c6-96f7-1dce5ef96499/ENCFF103PKS.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KMT2A KMT2A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555DCD Peak\ track wgEncodeReg4Epigenetics_ENCFF138DXQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF871CNV ENCSR695EQB Signal bigWig K562 ZNF24 ENCSR695EQB signal 2 3870 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/cd4f82db-f4ab-4038-b5fd-f87bcce3753b/ENCFF871CNV.bigWig\ color 254,75,173\ longLabel K562 ZNF24 ENCSR695EQB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR695EQB Signal\ track wgEncodeReg4TfChip_ENCFF871CNV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF857NIC ENCSR555DCD Signal bigWig Ascending aorta tissue female adult 53 years CTCF signal 2 3871 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/2f463128-ba7b-4cb8-8602-aabfbd730b32/ENCFF857NIC.bigWig\ color 0,176,240\ longLabel Ascending aorta tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555DCD Signal\ track wgEncodeReg4Epigenetics_ENCFF857NIC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF088QOO ENCSR695SLS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510 ZNF510 peaks 4 3871 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/549dd0e2-d188-49f4-911f-ca8255954e42/ENCFF088QOO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510 ZNF510 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555DLG Peak\ track wgEncodeReg4Epigenetics_ENCFF973CXQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF957ESR ENCSR695SLS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510 ZNF510 ENCSR695SLS signal 2 3872 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/6d00d617-2442-4c30-9baa-ed353b964f19/ENCFF957ESR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF510 ZNF510 ENCSR695SLS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR695SLS Signal\ track wgEncodeReg4TfChip_ENCFF957ESR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF408PXH ENCSR555DLG Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue male adult 90 or above years DNase signal 2 3873 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/bd816841-aec2-4e56-bf6a-05b2e66572b7/ENCFF408PXH.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue male adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555DLG Signal\ track wgEncodeReg4Epigenetics_ENCFF408PXH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF706DID ENCSR695WOH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1 MEIS1 peaks 4 3873 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/259ee809-b91f-46b5-b066-9c699c159c32/ENCFF706DID.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1 MEIS1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555HJT Peak\ track wgEncodeReg4Epigenetics_ENCFF415KGS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF347EEF ENCSR695WOH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1 MEIS1 ENCSR695WOH signal 2 3874 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/8503fab7-7afe-4303-9991-6d70c46e2671/ENCFF347EEF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1 MEIS1 ENCSR695WOH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR695WOH Signal\ track wgEncodeReg4TfChip_ENCFF347EEF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF658QWN ENCSR555HJT Signal bigWig Middle frontal area 46 tissue male adult 87 years H3K27ac signal 2 3875 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/32b198b5-9918-4e3f-9f36-ccc921b83ca5/ENCFF658QWN.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 87 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555HJT Signal\ track wgEncodeReg4Epigenetics_ENCFF658QWN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF767VVG ENCSR696LQU Peak bigBed 5 Ovary tissue female adult (53 years) EP300 peaks 4 3875 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/554f51ba-fc6b-47a9-96c5-3305e98548fd/ENCFF767VVG.bigBed\ labelFields none\ longLabel Ovary tissue female adult (53 years) EP300 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555VYM Peak\ track wgEncodeReg4Epigenetics_ENCFF746TEY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF667UNR ENCSR696LQU Signal bigWig Ovary tissue female adult (53 years) EP300 ENCSR696LQU signal 2 3876 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/f75f6935-fae6-471f-b46c-df6b7b57dadf/ENCFF667UNR.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (53 years) EP300 ENCSR696LQU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR696LQU Signal\ track wgEncodeReg4TfChip_ENCFF667UNR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF779ZLB ENCSR555VYM Signal bigWig CD14-positive monocyte male adult 30 years H3K27ac signal 2 3877 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/e0f5532e-cbd7-499a-b4b4-e748e4fac1bc/ENCFF779ZLB.bigWig\ color 181,145,0\ longLabel CD14-positive monocyte male adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR555VYM Signal\ track wgEncodeReg4Epigenetics_ENCFF779ZLB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF958PYB ENCSR696MBC Peak bigBed 5 HepG2 SRSF4 peaks 4 3877 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/da549217-ceab-4045-9420-b24a562dab5c/ENCFF958PYB.bigBed\ labelFields none\ longLabel HepG2 SRSF4 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR699RWG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF317MOH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF526HRV ENCSR559KAB Signal bigWig Esophagus muscularis mucosa tissue male adult 37 years CTCF signal 2 3893 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/dc1fde47-004a-4253-810a-8854b4cb176e/ENCFF526HRV.bigWig\ color 0,176,240\ longLabel Esophagus muscularis mucosa tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR559KAB Signal\ track wgEncodeReg4Epigenetics_ENCFF526HRV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF377FPR ENCSR699RWG Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF215 ZNF215 ENCSR699RWG signal 2 3893 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/33e032ad-ed00-4d19-a22a-09c4496ae286/ENCFF377FPR.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF215 ZNF215 ENCSR699RWG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR699RWG Signal\ track wgEncodeReg4TfChip_ENCFF377FPR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF916KSQ ENCSR559WMK Peak bigBed 5 Tongue tissue male embryo 72 days DNase peak 4 3894 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/bc291430-26dd-4b75-a91b-a2d784c16633/ENCFF916KSQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Tongue tissue male embryo 72 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR559WMK Peak\ track wgEncodeReg4Epigenetics_ENCFF916KSQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF744CVK ENCSR699YFX Peak bigBed 5 MCF-7 CLOCK peaks 4 3894 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/825fb50d-ca0a-46f5-8d79-7ba4a3022123/ENCFF744CVK.bigBed\ labelFields none\ longLabel MCF-7 CLOCK peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR699YFX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF744CVK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF969WDE ENCSR559WMK Signal bigWig Tongue tissue male embryo 72 days DNase signal 2 3895 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4904c7d3-9e6f-4e76-9adc-38e32e0e9929/ENCFF969WDE.bigWig\ color 6,218,147\ longLabel Tongue tissue male embryo 72 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR559WMK Signal\ track wgEncodeReg4Epigenetics_ENCFF969WDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF801NIV ENCSR699YFX Signal bigWig MCF-7 CLOCK ENCSR699YFX signal 2 3895 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/7854d163-cd81-4016-95e6-ef13ac0c57a1/ENCFF801NIV.bigWig\ color 65,171,173\ longLabel MCF-7 CLOCK ENCSR699YFX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR699YFX Signal\ track wgEncodeReg4TfChip_ENCFF801NIV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF492XQN ENCSR560BEL Peak bigBed 5 Basal cell carcinoma skin epidermis tissue female adult 48 years H3K27ac peak 4 3896 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/26/cca4cbf1-f364-4afa-83ca-8e372224c791/ENCFF492XQN.bigBed\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue female adult 48 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR699ZGH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF206JCD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF343QIC ENCSR560BEL Signal bigWig Basal cell carcinoma skin epidermis tissue female adult 48 years H3K27ac signal 2 3897 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/26/6938aa37-c82a-4b8d-b10c-43d913dcce3e/ENCFF343QIC.bigWig\ color 181,145,0\ longLabel Basal cell carcinoma skin epidermis tissue female adult 48 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR560BEL Signal\ track wgEncodeReg4Epigenetics_ENCFF343QIC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF977EXS ENCSR699ZGH Signal bigWig Heart left ventricle tissue female adult (51 years) POLR2A ENCSR699ZGH signal 2 3897 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/c90471f7-61fd-420d-b5d6-12e591b6313e/ENCFF977EXS.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (51 years) POLR2A ENCSR699ZGH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR699ZGH Signal\ track wgEncodeReg4TfChip_ENCFF977EXS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF645JTM ENCSR560MXA Peak bigBed 5 T-cell female adult 21 years DNase peak 4 3898 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/a09578d1-329b-4aeb-9683-b8557390f23f/ENCFF645JTM.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 21 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR563HBG Peak\ track wgEncodeReg4Epigenetics_ENCFF348OIX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF127TFV ENCSR705ASR Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN23 ZSCAN23 peaks 4 3916 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/50747a5c-b1df-46e1-bf1e-42e88f601aa0/ENCFF127TFV.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN23 ZSCAN23 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR563XBT Peak\ track wgEncodeReg4Epigenetics_ENCFF048TOJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF161XMB ENCSR705DNM Signal bigWig Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR705DNM signal 2 3918 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/bae46518-a094-4bbf-8641-f80ba95c08f7/ENCFF161XMB.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR705DNM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR705DNM Signal\ track wgEncodeReg4TfChip_ENCFF161XMB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF027BYQ ENCSR563XBT Signal bigWig Stimulated activated memory B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 signal 2 3919 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/d8003899-fb43-4c54-8838-4ba772b76d72/ENCFF027BYQ.bigWig\ color 255,0,0\ longLabel Stimulated activated memory B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR563XBT Signal\ track wgEncodeReg4Epigenetics_ENCFF027BYQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF215OUF ENCSR706BJO Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 peaks 4 3919 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a326ff14-2e74-47fc-90c1-c852eba9c9d6/ENCFF215OUF.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706BJO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF215OUF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF907CZB ENCSR563XRP Peak bigBed 5 Large intestine tissue female embryo 107 days DNase peak 4 3920 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/f472fffd-4cde-4d08-adc3-b7ac25f80d35/ENCFF907CZB.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 107 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR563XRP Peak\ track wgEncodeReg4Epigenetics_ENCFF907CZB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF971NQN ENCSR706BJO Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 ENCSR706BJO signal 2 3920 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ef423c85-b7bb-4283-8399-a3c3c84d9e4e/ENCFF971NQN.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 ENCSR706BJO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706BJO Signal\ track wgEncodeReg4TfChip_ENCFF971NQN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF644UUT ENCSR563XRP Signal bigWig Large intestine tissue female embryo 107 days DNase signal 2 3921 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4e36b741-05b0-49da-9aff-0d3905e4b1ac/ENCFF644UUT.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 107 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR563XRP Signal\ track wgEncodeReg4Epigenetics_ENCFF644UUT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF834EMP ENCSR706OJM Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens POU6F1 treated with 6 μM all-trans-retinoic acid for 48 hours POU6F1 peaks 4 3921 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/30/a03c0b0b-33c5-4331-952c-1ee2d98e7d38/ENCFF834EMP.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens POU6F1 treated with 6 μM all-trans-retinoic acid for 48 hours POU6F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706OJM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF834EMP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF744EKU ENCSR563ZNI Peak bigBed 5 Heart right ventricle tissue male adult 61 years ATAC peak 4 3922 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/53e49064-abb3-4156-9c51-ca8fe5443877/ENCFF744EKU.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 61 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR563ZNI Peak\ track wgEncodeReg4Epigenetics_ENCFF744EKU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF221VVL ENCSR706OJM Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens POU6F1 treated with 6 μM all-trans-retinoic acid for 48 hours POU6F1 ENCSR706OJM signal 2 3922 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/30/be3967e9-d8ed-4a40-a818-f60d6339032e/ENCFF221VVL.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens POU6F1 treated with 6 μM all-trans-retinoic acid for 48 hours POU6F1 ENCSR706OJM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706OJM Signal\ track wgEncodeReg4TfChip_ENCFF221VVL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF342SSO ENCSR563ZNI Signal bigWig Heart right ventricle tissue male adult 61 years ATAC signal 2 3923 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/c757b716-b142-457e-a3bf-d584a5d1243b/ENCFF342SSO.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue male adult 61 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR563ZNI Signal\ track wgEncodeReg4Epigenetics_ENCFF342SSO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF764OZD ENCSR706VOO Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 peaks 4 3923 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/930381db-2870-4d8a-9fd0-02d86acc06e2/ENCFF764OZD.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706VOO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF764OZD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF949TDF ENCSR564DHY Peak bigBed 5 Brain organoid female embryo 5 days, 180 days post differentiation H3K4me3 peak 4 3924 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/26/e4e6432e-0bb5-4b8f-92e5-17af5e8b3ce9/ENCFF949TDF.bigBed\ color 255,0,0\ longLabel Brain organoid female embryo 5 days, 180 days post differentiation H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564DHY Peak\ track wgEncodeReg4Epigenetics_ENCFF949TDF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF250XYD ENCSR706VOO Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 ENCSR706VOO signal 2 3924 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/d810a065-6357-45b0-9dd0-a375eda9ccf6/ENCFF250XYD.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 ENCSR706VOO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706VOO Signal\ track wgEncodeReg4TfChip_ENCFF250XYD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF004VJG ENCSR564DHY Signal bigWig Brain organoid female embryo 5 days, 180 days post differentiation H3K4me3 signal 2 3925 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c4f9ec81-863e-4a4f-952a-a9611d365606/ENCFF004VJG.bigWig\ color 255,0,0\ longLabel Brain organoid female embryo 5 days, 180 days post differentiation H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564DHY Signal\ track wgEncodeReg4Epigenetics_ENCFF004VJG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF327LDR ENCSR706YUH Peak bigBed 5 GM12878 SMARCA5 peaks 4 3925 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/f3a73ccd-1cdb-459d-9723-ad0a0de7547a/ENCFF327LDR.bigBed\ labelFields none\ longLabel GM12878 SMARCA5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706YUH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF327LDR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF456EXK ENCSR564FZH Peak bigBed 5 Prostate gland tissue male adult 37 years DNase peak 4 3926 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/4e94773d-26fa-41c5-a0d9-268096a999b5/ENCFF456EXK.bigBed\ color 6,218,147\ labelFields none\ longLabel Prostate gland tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564FZH Peak\ track wgEncodeReg4Epigenetics_ENCFF456EXK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF461PLB ENCSR706YUH Signal bigWig GM12878 SMARCA5 ENCSR706YUH signal 2 3926 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/ab6bdcda-91a7-4f56-9a85-68c526ffa0d2/ENCFF461PLB.bigWig\ color 254,75,173\ longLabel GM12878 SMARCA5 ENCSR706YUH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR706YUH Signal\ track wgEncodeReg4TfChip_ENCFF461PLB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF865IXT ENCSR564FZH Signal bigWig Prostate gland tissue male adult 37 years DNase signal 2 3927 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/f3b2ddef-3ab9-4fb6-84e8-f56db7878453/ENCFF865IXT.bigWig\ color 6,218,147\ longLabel Prostate gland tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564FZH Signal\ track wgEncodeReg4Epigenetics_ENCFF865IXT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF897QZG ENCSR707BNG Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MYNN MYNN peaks 4 3927 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/f4b84672-04d4-4a1e-a156-91e5912263af/ENCFF897QZG.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MYNN MYNN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707BNG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF897QZG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF405TMF ENCSR564IGJ Peak bigBed 5 SK-N-SH H3K27ac peak 4 3928 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/7fa929b5-a720-4caa-98d1-7a5bb8e565b6/ENCFF405TMF.bigBed\ color 181,145,0\ longLabel SK-N-SH H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564IGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF405TMF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF038DEF ENCSR707BNG Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MYNN MYNN ENCSR707BNG signal 2 3928 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/832fd668-9825-4b87-8bb0-78ea1916d0fd/ENCFF038DEF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens MYNN MYNN ENCSR707BNG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707BNG Signal\ track wgEncodeReg4TfChip_ENCFF038DEF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF262UEH ENCSR564IGJ Signal bigWig SK-N-SH H3K27ac signal 2 3929 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/e939aff9-cdce-4f29-896e-4c740f6108f6/ENCFF262UEH.bigWig\ color 181,145,0\ longLabel SK-N-SH H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564IGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF262UEH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF449JDM ENCSR707IUN Peak bigBed 5 HeLa-S3 NFE2L2 peaks 4 3929 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/fc9eff92-d5f7-435c-a697-be959dade146/ENCFF449JDM.bigBed\ labelFields none\ longLabel HeLa-S3 NFE2L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707IUN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF449JDM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF097RUH ENCSR564JUY Peak bigBed 5 Hematopoietic multipotent progenitor cell treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days DNase peak 4 3930 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/93efb43f-4644-403e-9b09-e5c9709e9ac7/ENCFF097RUH.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564JUY Peak\ track wgEncodeReg4Epigenetics_ENCFF097RUH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF354ZTB ENCSR707IUN Signal bigWig HeLa-S3 NFE2L2 ENCSR707IUN signal 2 3930 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/fdf5d365-df12-4bbf-91cc-cdbb11ff8f46/ENCFF354ZTB.bigWig\ color 186,111,165\ longLabel HeLa-S3 NFE2L2 ENCSR707IUN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707IUN Signal\ track wgEncodeReg4TfChip_ENCFF354ZTB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF633NER ENCSR564JUY Signal bigWig Hematopoietic multipotent progenitor cell treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days DNase signal 2 3931 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e5815b9c-643e-4647-a942-c1946b82e7b3/ENCFF633NER.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 6 days, kit ligand for 6 days, hydrocortisone succinate for 6 days, erythropoietin for 6 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564JUY Signal\ track wgEncodeReg4Epigenetics_ENCFF633NER\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF674RQA ENCSR707QWA Peak bigBed 5 K562 NR2F6 peaks 4 3931 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/6720cb2a-4cb4-43d1-a13a-bdcc79a0c2bd/ENCFF674RQA.bigBed\ labelFields none\ longLabel K562 NR2F6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707QWA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF674RQA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF138PUL ENCSR564TUY Peak bigBed 5 Common myeloid progenitor, CD34-positive male DNase peak 4 3932 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/a71daeb0-ceab-4fed-9960-95429a007a39/ENCFF138PUL.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive male DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564TUY Peak\ track wgEncodeReg4Epigenetics_ENCFF138PUL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF667ZBO ENCSR707QWA Signal bigWig K562 NR2F6 ENCSR707QWA signal 2 3932 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/9921addc-4f0f-406e-8b14-fdd4e718b82f/ENCFF667ZBO.bigWig\ color 254,75,173\ longLabel K562 NR2F6 ENCSR707QWA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707QWA Signal\ track wgEncodeReg4TfChip_ENCFF667ZBO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF026IDC ENCSR564TUY Signal bigWig Common myeloid progenitor, CD34-positive male DNase signal 2 3933 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/17f63026-6eb5-4c8c-ad84-f3b2450b2ef6/ENCFF026IDC.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive male DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564TUY Signal\ track wgEncodeReg4Epigenetics_ENCFF026IDC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF086FZV ENCSR707RKU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RORA RORA peaks 4 3933 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/d8168455-d341-4e9a-920d-9edc26d99df6/ENCFF086FZV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RORA RORA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707RKU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF086FZV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF462SOC ENCSR564WJA Peak bigBed 5 Spleen tissue female adult 59 years H3K27ac peak 4 3934 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/1604e3bc-d813-4a0c-a1e0-57851c308167/ENCFF462SOC.bigBed\ color 181,145,0\ longLabel Spleen tissue female adult 59 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564WJA Peak\ track wgEncodeReg4Epigenetics_ENCFF462SOC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF088DJI ENCSR707RKU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RORA RORA ENCSR707RKU signal 2 3934 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/14bafe64-2aca-40df-a3a7-d493ee697ba1/ENCFF088DJI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RORA RORA ENCSR707RKU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707RKU Signal\ track wgEncodeReg4TfChip_ENCFF088DJI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF428HQD ENCSR564WJA Signal bigWig Spleen tissue female adult 59 years H3K27ac signal 2 3935 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/e190b696-1537-4f13-8134-cded8e10c85a/ENCFF428HQD.bigWig\ color 181,145,0\ longLabel Spleen tissue female adult 59 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR564WJA Signal\ track wgEncodeReg4Epigenetics_ENCFF428HQD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF624JES ENCSR707WZK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NCOA1 NCOA1 peaks 4 3935 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/773af4be-8943-42ed-a313-58f1cec779a0/ENCFF624JES.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NCOA1 NCOA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR707WZK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF624JES\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF718WZF ENCSR565EBN Signal bigWig Small intestine tissue female embryo 98 days DNase signal 2 3936 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c3f227eb-efac-47cb-a627-a0c819539d10/ENCFF718WZF.bigWig\ color 6,218,147\ longLabel Small intestine tissue female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR565EBN Signal\ track wgEncodeReg4Epigenetics_ENCFF718WZF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF422NZT ENCSR708KAA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAFG MAFG peaks 4 3936 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/88a24c89-fc12-4912-b4cb-deb3ea30d0b1/ENCFF422NZT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAFG MAFG peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR565HBN Peak\ track wgEncodeReg4Epigenetics_ENCFF663LEI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF136CAF ENCSR708KAA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAFG MAFG ENCSR708KAA signal 2 3937 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/d5cb77c3-6012-4200-b10d-0f75233761d3/ENCFF136CAF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAFG MAFG ENCSR708KAA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR708KAA Signal\ track wgEncodeReg4TfChip_ENCFF136CAF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF252IVK ENCSR565HBN Signal bigWig Heart left ventricle tissue female adult 46 years CTCF signal 2 3938 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/c07996df-60d9-41ca-a715-589e03950be5/ENCFF252IVK.bigWig\ color 0,176,240\ longLabel Heart left ventricle tissue female adult 46 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR565HBN Signal\ track wgEncodeReg4Epigenetics_ENCFF252IVK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF688PUB ENCSR709DRM Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 peaks 4 3938 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5e29a04d-e9c6-450e-9d17-ed004b53102f/ENCFF688PUB.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR709DRM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF688PUB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF770AFG ENCSR565RQI Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak 4 3939 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/719a3952-0dc2-4e82-8bbc-93287902c386/ENCFF770AFG.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR565RQI Peak\ track wgEncodeReg4Epigenetics_ENCFF770AFG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF659UEG ENCSR709DRM Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 ENCSR709DRM signal 2 3939 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/421b7cb1-be15-44b0-a0cd-28fcc0142eae/ENCFF659UEG.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 E2F5 ENCSR709DRM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR709DRM Signal\ track wgEncodeReg4TfChip_ENCFF659UEG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF191OBG ENCSR565RQI Signal bigWig Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal 2 3940 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/4b9451cb-9575-4cc1-9f6a-c204952a02e8/ENCFF191OBG.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR565RQI Signal\ track wgEncodeReg4Epigenetics_ENCFF191OBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF261IHC ENCSR710EFA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD2 TEAD2 peaks 4 3940 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/5e7534ca-66fb-41dc-b6a5-e49e7712050f/ENCFF261IHC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD2 TEAD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR710EFA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF261IHC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF479XSM ENCSR566HLQ Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase peak 4 3941 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/f85c3cfa-68f3-4701-b390-9e56a50a21af/ENCFF479XSM.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR566HLQ Peak\ track wgEncodeReg4Epigenetics_ENCFF479XSM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF638EHM ENCSR710EFA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD2 TEAD2 ENCSR710EFA signal 2 3941 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/f11bc5e4-2abc-48a7-b116-1434389dff5c/ENCFF638EHM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD2 TEAD2 ENCSR710EFA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR710EFA Signal\ track wgEncodeReg4TfChip_ENCFF638EHM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF047FBN ENCSR566HLQ Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase signal 2 3942 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/391494ac-2f0d-4d8f-90ab-140fcae40dd0/ENCFF047FBN.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR566HLQ Signal\ track wgEncodeReg4Epigenetics_ENCFF047FBN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF140CEX ENCSR710WLO Peak bigBed 5 K562 MGA peaks 4 3942 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/819f54d5-a891-461c-94b8-90e02dbe2757/ENCFF140CEX.bigBed\ labelFields none\ longLabel K562 MGA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR710WLO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF140CEX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF172SUY ENCSR566VAK Peak bigBed 5 Placenta tissue female embryo DNase peak 4 3943 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/4027d43d-4e44-4e88-a593-54508a11c2d8/ENCFF172SUY.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR566VAK Peak\ track wgEncodeReg4Epigenetics_ENCFF172SUY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF432HAG ENCSR710WLO Signal bigWig K562 MGA ENCSR710WLO signal 2 3943 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/f04277f3-76bd-4ca2-9ff2-d53261c296d9/ENCFF432HAG.bigWig\ color 254,75,173\ longLabel K562 MGA ENCSR710WLO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR710WLO Signal\ track wgEncodeReg4TfChip_ENCFF432HAG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF470BCI ENCSR566VAK Signal bigWig Placenta tissue female embryo DNase signal 2 3944 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/f99aa9bc-276c-4203-a298-cfd52e20a71f/ENCFF470BCI.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR566VAK Signal\ track wgEncodeReg4Epigenetics_ENCFF470BCI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF347LSW ENCSR711KBM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 ZNF12 peaks 4 3944 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/26/1c464f94-ed64-4001-bfed-775e3331cf27/ENCFF347LSW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 ZNF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR711KBM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF347LSW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF335OJR ENCSR567EEO Peak bigBed 5 Spleen tissue female adult 61 years DNase peak 4 3945 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/de23f25a-4e76-403b-8cfa-77a6ab659c0c/ENCFF335OJR.bigBed\ color 6,218,147\ labelFields none\ longLabel Spleen tissue female adult 61 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR567EEO Peak\ track wgEncodeReg4Epigenetics_ENCFF335OJR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF590YJG ENCSR711KBM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 ZNF12 ENCSR711KBM signal 2 3945 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/26/1e8b3d1c-b845-4972-9078-410355ca563f/ENCFF590YJG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 ZNF12 ENCSR711KBM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR711KBM Signal\ track wgEncodeReg4TfChip_ENCFF590YJG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF221CLN ENCSR567EEO Signal bigWig Spleen tissue female adult 61 years DNase signal 2 3946 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/7d9a8518-95c4-4f88-99f2-2dfb52ca561e/ENCFF221CLN.bigWig\ color 6,218,147\ longLabel Spleen tissue female adult 61 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR567EEO Signal\ track wgEncodeReg4Epigenetics_ENCFF221CLN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF928TKZ ENCSR711VWL Peak bigBed 5 K562 HDAC1 peaks 4 3946 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/609f98bd-5956-465a-9e7a-b9f5bbb5fefd/ENCFF928TKZ.bigBed\ labelFields none\ longLabel K562 HDAC1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR711VWL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF928TKZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF081QPS ENCSR567IWT Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 37 years DNase peak 4 3947 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/f6b8eb37-9657-44fa-8ebb-7a46cd6c3d03/ENCFF081QPS.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR567IWT Peak\ track wgEncodeReg4Epigenetics_ENCFF081QPS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF684RNO ENCSR711VWL Signal bigWig K562 HDAC1 ENCSR711VWL signal 2 3947 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/0194e178-0c18-48e1-bdb8-7a2b7897737e/ENCFF684RNO.bigWig\ color 254,75,173\ longLabel K562 HDAC1 ENCSR711VWL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR711VWL Signal\ track wgEncodeReg4TfChip_ENCFF684RNO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF289RUM ENCSR567IWT Signal bigWig CD4-positive, alpha-beta T cell female adult 37 years DNase signal 2 3948 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/d1d04707-f13c-4beb-9eba-442a7a12052a/ENCFF289RUM.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR567IWT Signal\ track wgEncodeReg4Epigenetics_ENCFF289RUM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF589FCY ENCSR711XNY Peak bigBed 5 GM12878 PKNOX1 peaks 4 3948 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/df817b2c-1841-4df2-827a-b5e932143368/ENCFF589FCY.bigBed\ labelFields none\ longLabel GM12878 PKNOX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR711XNY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF589FCY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF455OWC ENCSR568QQU Peak bigBed 5 Breast epithelium tissue female adult 51 years H3K4me3 peak 4 3949 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/aa440381-3bd0-494b-b006-98c16430d654/ENCFF455OWC.bigBed\ color 255,0,0\ longLabel Breast epithelium tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR568QQU Peak\ track wgEncodeReg4Epigenetics_ENCFF455OWC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF234CAE ENCSR711XNY Signal bigWig GM12878 PKNOX1 ENCSR711XNY signal 2 3949 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/d60b9c80-a96f-4052-a2b3-9b0587250ddb/ENCFF234CAE.bigWig\ color 254,75,173\ longLabel GM12878 PKNOX1 ENCSR711XNY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR711XNY Signal\ track wgEncodeReg4TfChip_ENCFF234CAE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF278ZAD ENCSR568QQU Signal bigWig Breast epithelium tissue female adult 51 years H3K4me3 signal 2 3950 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/18cc5d70-ada5-4cbf-bdf5-988cb484387c/ENCFF278ZAD.bigWig\ color 255,0,0\ longLabel Breast epithelium tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR568QQU Signal\ track wgEncodeReg4Epigenetics_ENCFF278ZAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF196RWJ ENCSR712FAM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN9 ZSCAN9 peaks 4 3950 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/e2a223f2-208c-438f-9bf0-c2f00b000df2/ENCFF196RWJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN9 ZSCAN9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR712FAM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF196RWJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF092AZU ENCSR569ATD Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase peak 4 3951 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/48bc93c4-ba5c-44f7-9ae0-5152398d0189/ENCFF092AZU.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR569ATD Peak\ track wgEncodeReg4Epigenetics_ENCFF092AZU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF695GFP ENCSR712FAM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN9 ZSCAN9 ENCSR712FAM signal 2 3951 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/4a24f591-6279-4e6e-9668-95432995bc79/ENCFF695GFP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN9 ZSCAN9 ENCSR712FAM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR712FAM Signal\ track wgEncodeReg4TfChip_ENCFF695GFP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF814BAJ ENCSR569ATD Signal bigWig CD4-positive, alpha-beta T cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase signal 2 3952 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/6f6a5acf-9498-4028-96d5-2dc3119a57d3/ENCFF814BAJ.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell male adult 21 years treated with 7.5 μg/kg G-CSF for 4 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR569ATD Signal\ track wgEncodeReg4Epigenetics_ENCFF814BAJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF702GEM ENCSR712KVZ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324 ZNF324 peaks 4 3952 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/c43b99ae-d166-4e5e-a63e-8f6a46c2151d/ENCFF702GEM.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324 ZNF324 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR712KVZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF702GEM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF636NVO ENCSR570AUC Peak bigBed 5 Natural killer cell male adult 37 years H3K4me3 peak 4 3953 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/e5f5db9d-acad-4a5e-be13-b6b721d2e1c9/ENCFF636NVO.bigBed\ color 255,0,0\ longLabel Natural killer cell male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570AUC Peak\ track wgEncodeReg4Epigenetics_ENCFF636NVO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF078UFB ENCSR712KVZ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324 ZNF324 ENCSR712KVZ signal 2 3953 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/9c182be8-fe2c-4014-a502-1fdb88df436d/ENCFF078UFB.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324 ZNF324 ENCSR712KVZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR712KVZ Signal\ track wgEncodeReg4TfChip_ENCFF078UFB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF077KMI ENCSR570AUC Signal bigWig Natural killer cell male adult 37 years H3K4me3 signal 2 3954 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/8bf4b780-8864-4133-a78a-6dc5ff59746d/ENCFF077KMI.bigWig\ color 255,0,0\ longLabel Natural killer cell male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570AUC Signal\ track wgEncodeReg4Epigenetics_ENCFF077KMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF477SLH ENCSR713IFY Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146 ZNF146 peaks 4 3954 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/303e504b-4566-472c-a8d8-97ec2dfcef52/ENCFF477SLH.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146 ZNF146 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR713IFY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF477SLH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF419VOK ENCSR570BWW Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase peak 4 3955 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/70d4dcf4-2ab1-474c-a20d-1f71a2fb90cc/ENCFF419VOK.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570BWW Peak\ track wgEncodeReg4Epigenetics_ENCFF419VOK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF165ROS ENCSR713IFY Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146 ZNF146 ENCSR713IFY signal 2 3955 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/45bf5023-e767-4cf7-942e-28d498d8ecb0/ENCFF165ROS.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF146 ZNF146 ENCSR713IFY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR713IFY Signal\ track wgEncodeReg4TfChip_ENCFF165ROS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF318DDE ENCSR570BWW Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase signal 2 3956 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/66cb31f2-de09-48ba-9660-805ce140b122/ENCFF318DDE.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570BWW Signal\ track wgEncodeReg4Epigenetics_ENCFF318DDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF777TNC ENCSR713SXF Peak bigBed 5 Cardiac muscle cell originated from RUES2 CTCF peaks 4 3956 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b231613d-42a9-4cbc-901f-3cc9c107de5c/ENCFF777TNC.bigBed\ labelFields none\ longLabel Cardiac muscle cell originated from RUES2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR713SXF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF777TNC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF471AFP ENCSR570IJX Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak 4 3957 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/ac7311b4-3cc4-4b4d-b6eb-b77437b65725/ENCFF471AFP.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570IJX Peak\ track wgEncodeReg4Epigenetics_ENCFF471AFP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF466BIT ENCSR713SXF Signal bigWig Cardiac muscle cell originated from RUES2 CTCF ENCSR713SXF signal 2 3957 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/acba7eab-ff07-4afb-bd5e-49bb03b2b860/ENCFF466BIT.bigWig\ color 137,135,170\ longLabel Cardiac muscle cell originated from RUES2 CTCF ENCSR713SXF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR713SXF Signal\ track wgEncodeReg4TfChip_ENCFF466BIT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF848KXX ENCSR570IJX Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal 2 3958 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/d56f07e3-126b-4cb5-88b9-37036e5bf370/ENCFF848KXX.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570IJX Signal\ track wgEncodeReg4Epigenetics_ENCFF848KXX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF610RWV ENCSR714EQS Peak bigBed 5 Transverse colon tissue female adult (53 years) POLR2AphosphoS5 peaks 4 3958 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/72eb35e6-4105-4f90-bf38-e527923b8385/ENCFF610RWV.bigBed\ labelFields none\ longLabel Transverse colon tissue female adult (53 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714EQS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF610RWV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF487BBI ENCSR570PYH Peak bigBed 5 Middle frontal area 46 tissue male adult 84 years H3K4me3 peak 4 3959 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/bbb6fc96-3abe-48f1-aedb-c7214210824e/ENCFF487BBI.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 84 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570PYH Peak\ track wgEncodeReg4Epigenetics_ENCFF487BBI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF649RYJ ENCSR714EQS Signal bigWig Transverse colon tissue female adult (53 years) POLR2AphosphoS5 ENCSR714EQS signal 2 3959 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/9f81337c-caec-44f7-8934-528d0dc8022e/ENCFF649RYJ.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (53 years) POLR2AphosphoS5 ENCSR714EQS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714EQS Signal\ track wgEncodeReg4TfChip_ENCFF649RYJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF580GFO ENCSR570PYH Signal bigWig Middle frontal area 46 tissue male adult 84 years H3K4me3 signal 2 3960 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/b69b1fe5-bb10-401f-ae2c-c1051e01b0f0/ENCFF580GFO.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 84 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR570PYH Signal\ track wgEncodeReg4Epigenetics_ENCFF580GFO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF278MYS ENCSR714JRB Peak bigBed 5 Stomach tissue female adult (51 years) POLR2AphosphoS5 peaks 4 3960 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/25c4b291-f162-46a8-8c62-735b4af955a7/ENCFF278MYS.bigBed\ labelFields none\ longLabel Stomach tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714JRB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF278MYS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF435VGT ENCSR571CJM Peak bigBed 5 Middle frontal area 46 tissue female adult 87 years DNase peak 4 3961 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/94df7049-03b4-4f2a-bced-6bbc9444a2cb/ENCFF435VGT.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571CJM Peak\ track wgEncodeReg4Epigenetics_ENCFF435VGT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF907DLU ENCSR714JRB Signal bigWig Stomach tissue female adult (51 years) POLR2AphosphoS5 ENCSR714JRB signal 2 3961 145 144 99 200 199 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/df1c1f0e-710a-4cde-9ae4-6fb5b1263473/ENCFF907DLU.bigWig\ color 145,144,99\ longLabel Stomach tissue female adult (51 years) POLR2AphosphoS5 ENCSR714JRB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714JRB Signal\ track wgEncodeReg4TfChip_ENCFF907DLU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF874WYJ ENCSR571CJM Signal bigWig Middle frontal area 46 tissue female adult 87 years DNase signal 2 3962 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/f4360c35-0cac-4e49-830b-a936c0ea43d3/ENCFF874WYJ.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571CJM Signal\ track wgEncodeReg4Epigenetics_ENCFF874WYJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF343XSW ENCSR714LZQ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF664 ZNF664 peaks 4 3962 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/3fc3081d-985e-4b6f-bbbf-bceb89351d9c/ENCFF343XSW.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF664 ZNF664 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714LZQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF343XSW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF278ASK ENCSR571CNF Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 H3K27ac peak 4 3963 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/07e90ea4-b0ad-4aa2-ae67-6078036b49b1/ENCFF278ASK.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571CNF Peak\ track wgEncodeReg4Epigenetics_ENCFF278ASK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF019EIF ENCSR714LZQ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF664 ZNF664 ENCSR714LZQ signal 2 3963 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/ef810724-efd8-4c43-b924-1cc6879062f9/ENCFF019EIF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF664 ZNF664 ENCSR714LZQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714LZQ Signal\ track wgEncodeReg4TfChip_ENCFF019EIF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF995AGX ENCSR571CNF Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 H3K27ac signal 2 3964 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/8d38ce1c-ed90-4839-b59f-38fb9d5ffbe2/ENCFF995AGX.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571CNF Signal\ track wgEncodeReg4Epigenetics_ENCFF995AGX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF534CDD ENCSR714YZG Peak bigBed 5 HepG2 ETV4 peaks 4 3964 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/089aed3e-e951-4c8c-8efd-2e8a6afaad3c/ENCFF534CDD.bigBed\ labelFields none\ longLabel HepG2 ETV4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714YZG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF534CDD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF302YGG ENCSR571HAY Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak 4 3965 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/e76e2018-0cbd-4c2b-a54c-b958a6eb9173/ENCFF302YGG.bigBed\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571HAY Peak\ track wgEncodeReg4Epigenetics_ENCFF302YGG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF554IXW ENCSR714YZG Signal bigWig HepG2 ETV4 ENCSR714YZG signal 2 3965 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/2a9fff1a-d879-49aa-895b-b510a8bbea48/ENCFF554IXW.bigWig\ color 137,152,82\ longLabel HepG2 ETV4 ENCSR714YZG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR714YZG Signal\ track wgEncodeReg4TfChip_ENCFF554IXW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF177MAG ENCSR571HAY Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal 2 3966 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/447ebf03-54cb-4665-aa24-017089f6fe1f/ENCFF177MAG.bigWig\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571HAY Signal\ track wgEncodeReg4Epigenetics_ENCFF177MAG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF775HUO ENCSR715CCR Peak bigBed 5 K562 DPF2 peaks 4 3966 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/c5787829-042b-4623-af83-5330e27041c5/ENCFF775HUO.bigBed\ labelFields none\ longLabel K562 DPF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR715CCR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF775HUO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF813JPG ENCSR571QQB Peak bigBed 5 Caco-2 H3K27ac peak 4 3967 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/c6ad9fb3-c213-4458-8ca8-4b4cb921565e/ENCFF813JPG.bigBed\ color 181,145,0\ longLabel Caco-2 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571QQB Peak\ track wgEncodeReg4Epigenetics_ENCFF813JPG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF878GGX ENCSR715CCR Signal bigWig K562 DPF2 ENCSR715CCR signal 2 3967 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/56d02087-60c7-40f8-b15a-78a77326712b/ENCFF878GGX.bigWig\ color 254,75,173\ longLabel K562 DPF2 ENCSR715CCR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR715CCR Signal\ track wgEncodeReg4TfChip_ENCFF878GGX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF619JXN ENCSR571QQB Signal bigWig Caco-2 H3K27ac signal 2 3968 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/f580f4e0-cee0-428e-aee5-07903ff9a1e4/ENCFF619JXN.bigWig\ color 181,145,0\ longLabel Caco-2 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR571QQB Signal\ track wgEncodeReg4Epigenetics_ENCFF619JXN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF436CGE ENCSR715QNO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF362 ZNF362 peaks 4 3968 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/c5cf307e-2248-436b-ba85-2e2f74e88e8c/ENCFF436CGE.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF362 ZNF362 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR572DUJ Peak\ track wgEncodeReg4Epigenetics_ENCFF756FGB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF043HPU ENCSR715QNO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF362 ZNF362 ENCSR715QNO signal 2 3969 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f9582e3d-d3da-47b3-be02-3773e48ddfa0/ENCFF043HPU.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF362 ZNF362 ENCSR715QNO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR715QNO Signal\ track wgEncodeReg4TfChip_ENCFF043HPU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF885ZLN ENCSR572DUJ Signal bigWig Body of pancreas tissue male adult 37 years CTCF signal 2 3970 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/528e8dc8-6313-4996-bc37-c66626e8cb51/ENCFF885ZLN.bigWig\ color 0,176,240\ longLabel Body of pancreas tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR572DUJ Signal\ track wgEncodeReg4Epigenetics_ENCFF885ZLN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF062VSQ ENCSR715UCI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX13 SOX13 peaks 4 3970 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/331c2667-8bbc-4549-a18c-64a815f3891b/ENCFF062VSQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX13 SOX13 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR572LDG Peak\ track wgEncodeReg4Epigenetics_ENCFF475CCN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF004KTE ENCSR717QSS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELK1 ELK1 ENCSR717QSS signal 2 3973 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/7fb072ae-a0b7-44c0-aff5-fbf73b111bc3/ENCFF004KTE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELK1 ELK1 ENCSR717QSS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR717QSS Signal\ track wgEncodeReg4TfChip_ENCFF004KTE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF019PQI ENCSR572LDG Signal bigWig Brain tissue male embryo 101 days DNase signal 2 3974 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/1d91eca9-56cb-43c6-817f-3abfbcd78ceb/ENCFF019PQI.bigWig\ color 6,218,147\ longLabel Brain tissue male embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR572LDG Signal\ track wgEncodeReg4Epigenetics_ENCFF019PQI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF919WXY ENCSR717ZZW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F1 E2F1 peaks 4 3974 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/64db1f4e-4a61-4c7b-9ac2-50404504ab24/ENCFF919WXY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F1 E2F1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR574USP Peak\ track wgEncodeReg4Epigenetics_ENCFF573IFU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF846JMO ENCSR717ZZW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F1 E2F1 ENCSR717ZZW signal 2 3975 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/d36b17fa-51b7-4864-85d1-80b1d53e30f9/ENCFF846JMO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F1 E2F1 ENCSR717ZZW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR717ZZW Signal\ track wgEncodeReg4TfChip_ENCFF846JMO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF173NSX ENCSR574USP Signal bigWig Colonic mucosa tissue female adult 41 years H3K4me3 signal 2 3976 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ee979c1f-1996-49c4-9f96-d4d977272549/ENCFF173NSX.bigWig\ color 255,0,0\ longLabel Colonic mucosa tissue female adult 41 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR574USP Signal\ track wgEncodeReg4Epigenetics_ENCFF173NSX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF998IPA ENCSR718SDE Peak bigBed 5 K562 RLF peaks 4 3976 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/261bc9b7-b4ac-437a-985f-e4fbb463bba2/ENCFF998IPA.bigBed\ labelFields none\ longLabel K562 RLF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR718SDE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF998IPA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF878IKV ENCSR575ICR Peak bigBed 5 Germinal matrix tissue male embryo 20 weeks H3K4me3 peak 4 3977 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d8081b5b-e7f3-4b3e-86f5-1096dc83ca16/ENCFF878IKV.bigBed\ color 255,0,0\ longLabel Germinal matrix tissue male embryo 20 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575ICR Peak\ track wgEncodeReg4Epigenetics_ENCFF878IKV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF035IRM ENCSR718SDE Signal bigWig K562 RLF ENCSR718SDE signal 2 3977 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/27/dc0b1a00-4cc1-43c4-bc8c-fd3af4321c2f/ENCFF035IRM.bigWig\ color 254,75,173\ longLabel K562 RLF ENCSR718SDE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR718SDE Signal\ track wgEncodeReg4TfChip_ENCFF035IRM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF051QIL ENCSR575ICR Signal bigWig Germinal matrix tissue male embryo 20 weeks H3K4me3 signal 2 3978 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/9a273019-a1d9-475f-bee0-46042636f8d0/ENCFF051QIL.bigWig\ color 255,0,0\ longLabel Germinal matrix tissue male embryo 20 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575ICR Signal\ track wgEncodeReg4Epigenetics_ENCFF051QIL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF575JEQ ENCSR718SDR Peak bigBed 5 Heart left ventricle tissue female adult (51 years) CTCF peaks 4 3978 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/45c4b5d8-83ab-4814-a206-f9084645458f/ENCFF575JEQ.bigBed\ labelFields none\ longLabel Heart left ventricle tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR718SDR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF575JEQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF188HKO ENCSR575TRE Peak bigBed 5 Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 3979 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/598f5c8d-6187-414a-ac30-d1c2f3f8489f/ENCFF188HKO.bigBed\ color 181,145,0\ longLabel Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575TRE Peak\ track wgEncodeReg4Epigenetics_ENCFF188HKO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF311FLH ENCSR718SDR Signal bigWig Heart left ventricle tissue female adult (51 years) CTCF ENCSR718SDR signal 2 3979 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/140c68a6-92c5-46f2-9483-9d2eaaea7fbc/ENCFF311FLH.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (51 years) CTCF ENCSR718SDR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR718SDR Signal\ track wgEncodeReg4TfChip_ENCFF311FLH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF288VHI ENCSR575TRE Signal bigWig Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 3980 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/7d67d699-54b1-4d37-a228-becb8627654c/ENCFF288VHI.bigWig\ color 181,145,0\ longLabel Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575TRE Signal\ track wgEncodeReg4Epigenetics_ENCFF288VHI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF191BFW ENCSR720HUL Peak bigBed 5 K562 E2F1 peaks 4 3980 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/bff13f23-aeb3-442e-857b-e4ebf22f9f1f/ENCFF191BFW.bigBed\ labelFields none\ longLabel K562 E2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR720HUL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF191BFW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF794POS ENCSR575VMI Peak bigBed 5 Placenta tissue female embryo 101 days and male embryo 105 days DNase peak 4 3981 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/c2d2d69b-d706-415e-aab4-ec6e5015e78f/ENCFF794POS.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo 101 days and male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575VMI Peak\ track wgEncodeReg4Epigenetics_ENCFF794POS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF513XPM ENCSR720HUL Signal bigWig K562 E2F1 ENCSR720HUL signal 2 3981 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/9a314590-f56d-4379-bc54-6dafb017a662/ENCFF513XPM.bigWig\ color 254,75,173\ longLabel K562 E2F1 ENCSR720HUL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR720HUL Signal\ track wgEncodeReg4TfChip_ENCFF513XPM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF831DVG ENCSR575VMI Signal bigWig Placenta tissue female embryo 101 days and male embryo 105 days DNase signal 2 3982 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/05831385-ac1f-4086-9067-e613b321c881/ENCFF831DVG.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo 101 days and male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575VMI Signal\ track wgEncodeReg4Epigenetics_ENCFF831DVG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF518BKZ ENCSR720PDY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF20 ZNF20 peaks 4 3982 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/ad5cf5ce-8f76-4abe-8226-c6fd706781f0/ENCFF518BKZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF20 ZNF20 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR720PDY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF518BKZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF478RRB ENCSR575WYM Peak bigBed 5 Middle frontal area 46 tissue female adult 87 years CTCF peak 4 3983 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/17baf79a-966e-4217-82fb-f2d5ba8382b2/ENCFF478RRB.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 87 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575WYM Peak\ track wgEncodeReg4Epigenetics_ENCFF478RRB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF922FXE ENCSR720PDY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF20 ZNF20 ENCSR720PDY signal 2 3983 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/a15b7048-aa63-4a0c-9c82-80cbafc72756/ENCFF922FXE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF20 ZNF20 ENCSR720PDY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR720PDY Signal\ track wgEncodeReg4TfChip_ENCFF922FXE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF653MQB ENCSR575WYM Signal bigWig Middle frontal area 46 tissue female adult 87 years CTCF signal 2 3984 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/1617d79f-554f-45b4-aed5-6efd1bc7427d/ENCFF653MQB.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 87 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR575WYM Signal\ track wgEncodeReg4Epigenetics_ENCFF653MQB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF979KAF ENCSR720USO Peak bigBed 5 Prostate gland tissue male adult (37 years) CTCF peaks 4 3984 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/dda5a6c7-9e78-4584-b936-375e103e8b51/ENCFF979KAF.bigBed\ labelFields none\ longLabel Prostate gland tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR720USO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF979KAF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF969PZZ ENCSR576UAF Peak bigBed 5 Colonic mucosa tissue female child 16 years DNase peak 4 3985 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/54ed7b39-170f-4dcf-b7c1-c1f56c8402f7/ENCFF969PZZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Colonic mucosa tissue female child 16 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR576UAF Peak\ track wgEncodeReg4Epigenetics_ENCFF969PZZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF310UCW ENCSR720USO Signal bigWig Prostate gland tissue male adult (37 years) CTCF ENCSR720USO signal 2 3985 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/9e11b100-89d3-4255-b168-585e5d801c00/ENCFF310UCW.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (37 years) CTCF ENCSR720USO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR720USO Signal\ track wgEncodeReg4TfChip_ENCFF310UCW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF761ZGJ ENCSR576UAF Signal bigWig Colonic mucosa tissue female child 16 years DNase signal 2 3986 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/30ee352e-2d69-49ee-b7d0-e20210e9927e/ENCFF761ZGJ.bigWig\ color 6,218,147\ longLabel Colonic mucosa tissue female child 16 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR576UAF Signal\ track wgEncodeReg4Epigenetics_ENCFF761ZGJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF219LPW ENCSR721AHD Peak bigBed 5 Sigmoid colon tissue male adult (37 years) CTCF peaks 4 3986 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/cb35a1ef-4598-4c26-87d7-b179a239118f/ENCFF219LPW.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR721AHD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF219LPW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF910LHJ ENCSR577DVK Peak bigBed 5 Colonic mucosa tissue female adult 73 years H3K4me3 peak 4 3987 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8d50ffa6-380b-46f5-8b49-c3c70ae5fbb2/ENCFF910LHJ.bigBed\ color 255,0,0\ longLabel Colonic mucosa tissue female adult 73 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577DVK Peak\ track wgEncodeReg4Epigenetics_ENCFF910LHJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF460ECX ENCSR721AHD Signal bigWig Sigmoid colon tissue male adult (37 years) CTCF ENCSR721AHD signal 2 3987 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1eb69051-0a98-486c-83bb-aeb8e3a3adcc/ENCFF460ECX.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (37 years) CTCF ENCSR721AHD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR721AHD Signal\ track wgEncodeReg4TfChip_ENCFF460ECX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF051JTV ENCSR577DVK Signal bigWig Colonic mucosa tissue female adult 73 years H3K4me3 signal 2 3988 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/a2cb5902-f3c9-4202-b50c-86c5acc0a3d7/ENCFF051JTV.bigWig\ color 255,0,0\ longLabel Colonic mucosa tissue female adult 73 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577DVK Signal\ track wgEncodeReg4Epigenetics_ENCFF051JTV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF537OVZ ENCSR721QZV Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN18 ZSCAN18 peaks 4 3988 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/b8ba9253-6b34-4620-aa97-8a9c970fc04f/ENCFF537OVZ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN18 ZSCAN18 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR721QZV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF537OVZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF631EBQ ENCSR577GVS Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak 4 3989 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/76a23d47-e6bf-473b-ba54-8e977b28cbe6/ENCFF631EBQ.bigBed\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577GVS Peak\ track wgEncodeReg4Epigenetics_ENCFF631EBQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF948BFO ENCSR721QZV Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN18 ZSCAN18 ENCSR721QZV signal 2 3989 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/5f20b4f7-ed23-4b97-8bb6-017a790a869d/ENCFF948BFO.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN18 ZSCAN18 ENCSR721QZV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR721QZV Signal\ track wgEncodeReg4TfChip_ENCFF948BFO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF604ZNJ ENCSR577GVS Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal 2 3990 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/3150d0fd-29e0-4cc6-b761-89d47b352a9b/ENCFF604ZNJ.bigWig\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577GVS Signal\ track wgEncodeReg4Epigenetics_ENCFF604ZNJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF986SDH ENCSR722TRY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAWR PAWR peaks 4 3990 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/9db5d16f-83f8-4607-9db4-c1d012dacb2d/ENCFF986SDH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAWR PAWR peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR722TRY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF986SDH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF068PXG ENCSR577ILY Peak bigBed 5 Esophagus tissue male adult 34 years H3K4me3 peak 4 3991 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/696cf62f-0339-4d37-8c24-f411a4444f60/ENCFF068PXG.bigBed\ color 255,0,0\ longLabel Esophagus tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577ILY Peak\ track wgEncodeReg4Epigenetics_ENCFF068PXG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF623HWI ENCSR722TRY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAWR PAWR ENCSR722TRY signal 2 3991 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/1506e1a4-0a55-4985-96a2-c08f7b3ef3c8/ENCFF623HWI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAWR PAWR ENCSR722TRY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR722TRY Signal\ track wgEncodeReg4TfChip_ENCFF623HWI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF223CEC ENCSR577ILY Signal bigWig Esophagus tissue male adult 34 years H3K4me3 signal 2 3992 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/75db1a58-6a06-4532-99f8-3016baed4878/ENCFF223CEC.bigWig\ color 255,0,0\ longLabel Esophagus tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577ILY Signal\ track wgEncodeReg4Epigenetics_ENCFF223CEC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF653CQA ENCSR724FCJ Peak bigBed 5 Sigmoid colon tissue female adult (51 years) POLR2A peaks 4 3992 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/860337c8-c195-4d50-99e3-0169878dcabf/ENCFF653CQA.bigBed\ labelFields none\ longLabel Sigmoid colon tissue female adult (51 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR724FCJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF653CQA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962UHS ENCSR577QZP Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 3993 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/958be37f-5e61-4dbf-8c92-3acd2ba8fccb/ENCFF962UHS.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577QZP Peak\ track wgEncodeReg4Epigenetics_ENCFF962UHS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF987BQK ENCSR724FCJ Signal bigWig Sigmoid colon tissue female adult (51 years) POLR2A ENCSR724FCJ signal 2 3993 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/66c8d405-cd4d-420f-b161-cf23832fc623/ENCFF987BQK.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue female adult (51 years) POLR2A ENCSR724FCJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR724FCJ Signal\ track wgEncodeReg4TfChip_ENCFF987BQK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF765IHL ENCSR577QZP Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 3994 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/fd304ade-47c1-4d65-a418-7ab0c3ee9fda/ENCFF765IHL.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR577QZP Signal\ track wgEncodeReg4Epigenetics_ENCFF765IHL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF327VLN ENCSR724YTA Peak bigBed 5 Middle frontal area 46 tissue male adult (87 years) CTCF peaks 4 3994 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/cd33d549-c364-473a-a8a8-77aaba2103e8/ENCFF327VLN.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue male adult (87 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR724YTA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF327VLN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF832OXT ENCSR578AKX Peak bigBed 5 Heart left ventricle tissue male adult 73 years CTCF peak 4 3995 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/aa1b9cff-8388-459b-a59e-f2743602fc1d/ENCFF832OXT.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart left ventricle tissue male adult 73 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR578AKX Peak\ track wgEncodeReg4Epigenetics_ENCFF832OXT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF961RFY ENCSR724YTA Signal bigWig Middle frontal area 46 tissue male adult (87 years) CTCF ENCSR724YTA signal 2 3995 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/a51b7297-d301-45b5-b123-e4ffa3456048/ENCFF961RFY.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue male adult (87 years) CTCF ENCSR724YTA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR724YTA Signal\ track wgEncodeReg4TfChip_ENCFF961RFY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF992WUL ENCSR578AKX Signal bigWig Heart left ventricle tissue male adult 73 years CTCF signal 2 3996 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6811b31c-1a65-4d91-bc8b-3f4bfe9ab9fb/ENCFF992WUL.bigWig\ color 0,176,240\ longLabel Heart left ventricle tissue male adult 73 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR578AKX Signal\ track wgEncodeReg4Epigenetics_ENCFF992WUL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF491KVL ENCSR725QZQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD3 TIGD3 peaks 4 3996 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/5f640b22-6aa3-4f9b-8ed7-08ddc35d66d3/ENCFF491KVL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD3 TIGD3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR725QZQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF491KVL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF751TEV ENCSR578KKD Peak bigBed 5 Immature natural killer cell H3K4me3 peak 4 3997 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a2ab2796-ab0f-4498-b080-b567622da700/ENCFF751TEV.bigBed\ color 255,0,0\ longLabel Immature natural killer cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR578KKD Peak\ track wgEncodeReg4Epigenetics_ENCFF751TEV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF469POI ENCSR725QZQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD3 TIGD3 ENCSR725QZQ signal 2 3997 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/d0cda0f5-35c6-43e6-94d3-f680843f667b/ENCFF469POI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD3 TIGD3 ENCSR725QZQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR725QZQ Signal\ track wgEncodeReg4TfChip_ENCFF469POI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF698IBI ENCSR578KKD Signal bigWig Immature natural killer cell H3K4me3 signal 2 3998 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/bdbf457e-ac29-4344-bd85-3f002fe61c30/ENCFF698IBI.bigWig\ color 255,0,0\ longLabel Immature natural killer cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR578KKD Signal\ track wgEncodeReg4Epigenetics_ENCFF698IBI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF433DMU ENCSR725VFL Peak bigBed 5 GM12878 TCF12 peaks 4 3998 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/b3630ae5-c96d-4710-b2cd-4a573c1bd072/ENCFF433DMU.bigBed\ labelFields none\ longLabel GM12878 TCF12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR725VFL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF433DMU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF422PGY ENCSR579DBA Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours DNase peak 4 3999 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/cfa5cba4-5111-415a-b986-deba6cac07b8/ENCFF422PGY.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579DBA Peak\ track wgEncodeReg4Epigenetics_ENCFF422PGY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF450GYM ENCSR725VFL Signal bigWig GM12878 TCF12 ENCSR725VFL signal 2 3999 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/b1d54c19-d295-47a8-8055-732fe36cdc48/ENCFF450GYM.bigWig\ color 254,75,173\ longLabel GM12878 TCF12 ENCSR725VFL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR725VFL Signal\ track wgEncodeReg4TfChip_ENCFF450GYM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF782QST ENCSR579DBA Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours DNase signal 2 4000 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/00125569-b3ab-44ee-a523-8370a7a71f73/ENCFF782QST.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-2 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579DBA Signal\ track wgEncodeReg4Epigenetics_ENCFF782QST\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF481TFV ENCSR727PIC Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34 ZNF34 peaks 4 4000 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/9c636cb5-9bc3-4df5-88a7-36d0235d3e21/ENCFF481TFV.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34 ZNF34 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR727PIC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF481TFV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF281EQE ENCSR579DZQ Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak 4 4001 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/885d6ec1-9dab-4558-b3ad-449d32dbadbd/ENCFF281EQE.bigBed\ color 255,0,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579KDC Peak\ track wgEncodeReg4Epigenetics_ENCFF410XBU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF665HTK ENCSR728MWW Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZIC2 ZIC2 ENCSR728MWW signal 2 4003 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/3167f9d0-edb1-41d0-9c2f-74066f39d006/ENCFF665HTK.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZIC2 ZIC2 ENCSR728MWW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR728MWW Signal\ track wgEncodeReg4TfChip_ENCFF665HTK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF654RET ENCSR579KDC Signal bigWig Lower leg skin tissue female adult 53 years DNase signal 2 4004 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/430bbaad-a9a9-4410-8b28-08d941f2fb36/ENCFF654RET.bigWig\ color 6,218,147\ longLabel Lower leg skin tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579KDC Signal\ track wgEncodeReg4Epigenetics_ENCFF654RET\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF870WCE ENCSR729GXE Peak bigBed 5 Spleen tissue male adult (37 years) POLR2A peaks 4 4004 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/63dd7475-10b2-4f81-a4ea-694193b8c4aa/ENCFF870WCE.bigBed\ labelFields none\ longLabel Spleen tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579NKR Peak\ track wgEncodeReg4Epigenetics_ENCFF656VHP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF696RJC ENCSR729GXE Signal bigWig Spleen tissue male adult (37 years) POLR2A ENCSR729GXE signal 2 4005 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/2601e096-32ac-46b9-9750-fc8cfa46dfd3/ENCFF696RJC.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (37 years) POLR2A ENCSR729GXE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR729GXE Signal\ track wgEncodeReg4TfChip_ENCFF696RJC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF977OWA ENCSR579NKR Signal bigWig Activated CD8-positive, naive alpha-beta T cell H3K4me3 signal 2 4006 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/2f0bf715-192e-4d69-b46e-39eac7fbd3ba/ENCFF977OWA.bigWig\ color 255,0,0\ longLabel Activated CD8-positive, naive alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579NKR Signal\ track wgEncodeReg4Epigenetics_ENCFF977OWA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF290PDB ENCSR729HVR Peak bigBed 5 K562 stably expressing ZNF644 ZNF644 peaks 4 4006 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d6d47df0-fe08-4b9d-b60e-5e032dd19757/ENCFF290PDB.bigBed\ labelFields none\ longLabel K562 stably expressing ZNF644 ZNF644 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR729HVR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF290PDB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF681MKR ENCSR579RVI Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 4007 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/4110307f-3282-49ca-8310-51072e25468e/ENCFF681MKR.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579RVI Peak\ track wgEncodeReg4Epigenetics_ENCFF681MKR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF798VZZ ENCSR729HVR Signal bigWig K562 stably expressing ZNF644 ZNF644 ENCSR729HVR signal 2 4007 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/13e01f8e-47ca-4e13-8cf9-0daf644aed20/ENCFF798VZZ.bigWig\ color 254,75,173\ longLabel K562 stably expressing ZNF644 ZNF644 ENCSR729HVR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR729HVR Signal\ track wgEncodeReg4TfChip_ENCFF798VZZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF290JDE ENCSR579RVI Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 4008 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/231dd105-8f17-499f-a79e-7061dfee747b/ENCFF290JDE.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579RVI Signal\ track wgEncodeReg4Epigenetics_ENCFF290JDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF964FWK ENCSR730DZO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B ARID5B peaks 4 4008 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/fdf7344a-d4a0-47e8-acb5-53eeea72a27b/ENCFF964FWK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B ARID5B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR730DZO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF964FWK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF772XCE ENCSR579SNM Peak bigBed 5 MG63 H3K4me3 peak 4 4009 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/6c328df7-ed68-4beb-a63d-ad4a52bed07d/ENCFF772XCE.bigBed\ color 255,0,0\ longLabel MG63 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579SNM Peak\ track wgEncodeReg4Epigenetics_ENCFF772XCE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF003ODG ENCSR730DZO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B ARID5B ENCSR730DZO signal 2 4009 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/11ba9cb4-7a41-45fc-90ca-215a85c6024b/ENCFF003ODG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B ARID5B ENCSR730DZO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR730DZO Signal\ track wgEncodeReg4TfChip_ENCFF003ODG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF197ZMU ENCSR579SNM Signal bigWig MG63 H3K4me3 signal 2 4010 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/9644775d-77fe-4cbd-85ce-191d815cabfd/ENCFF197ZMU.bigWig\ color 255,0,0\ longLabel MG63 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579SNM Signal\ track wgEncodeReg4Epigenetics_ENCFF197ZMU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF502ATV ENCSR730TBC Peak bigBed 5 HepG2 MNT peaks 4 4010 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/013c7fb2-0710-4cba-8018-f24ae001064d/ENCFF502ATV.bigBed\ labelFields none\ longLabel HepG2 MNT peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR730TBC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF502ATV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF739OHS ENCSR579YLO Peak bigBed 5 Fibroblast of breast female adult 17 years H3K27ac peak 4 4011 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/875610d9-6265-40b9-a812-b330b2907202/ENCFF739OHS.bigBed\ color 181,145,0\ longLabel Fibroblast of breast female adult 17 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579YLO Peak\ track wgEncodeReg4Epigenetics_ENCFF739OHS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF524WVN ENCSR730TBC Signal bigWig HepG2 MNT ENCSR730TBC signal 2 4011 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/04/306fd609-8c97-4c33-b870-be5707542601/ENCFF524WVN.bigWig\ color 137,152,82\ longLabel HepG2 MNT ENCSR730TBC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR730TBC Signal\ track wgEncodeReg4TfChip_ENCFF524WVN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF422UWB ENCSR579YLO Signal bigWig Fibroblast of breast female adult 17 years H3K27ac signal 2 4012 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2fd85094-03c3-48c5-9fd7-a087621dd030/ENCFF422UWB.bigWig\ color 181,145,0\ longLabel Fibroblast of breast female adult 17 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR579YLO Signal\ track wgEncodeReg4Epigenetics_ENCFF422UWB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF343DTU ENCSR731AGO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5C ZSCAN5C peaks 4 4012 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/8ff56850-8c3e-48c2-9123-9b8677d864ad/ENCFF343DTU.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5C ZSCAN5C peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR731AGO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF343DTU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF648VSL ENCSR580JBA Peak bigBed 5 GM18868 ATAC peak 4 4013 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/c50bdf22-77ad-427a-a10d-e56f40bb10a3/ENCFF648VSL.bigBed\ color 2,199,185\ longLabel GM18868 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR580JBA Peak\ track wgEncodeReg4Epigenetics_ENCFF648VSL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF231PLQ ENCSR731AGO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5C ZSCAN5C ENCSR731AGO signal 2 4013 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/718c2f6f-bcaa-4217-ac82-afd9471f449d/ENCFF231PLQ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN5C ZSCAN5C ENCSR731AGO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR731AGO Signal\ track wgEncodeReg4TfChip_ENCFF231PLQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF304QRZ ENCSR580JBA Signal bigWig GM18868 ATAC signal 2 4014 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/5a7bf185-a2b3-4bf4-a4c8-57c1af923d39/ENCFF304QRZ.bigWig\ color 2,199,185\ longLabel GM18868 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR580JBA Signal\ track wgEncodeReg4Epigenetics_ENCFF304QRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF622HMZ ENCSR731LHZ Peak bigBed 5 K562 E4F1 peaks 4 4014 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/49aed151-249f-482d-a11f-e00a0d737b51/ENCFF622HMZ.bigBed\ labelFields none\ longLabel K562 E4F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR731LHZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF622HMZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF765RTN ENCSR580OAH Peak bigBed 5 Renal pelvis tissue male embryo 91 days DNase peak 4 4015 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/573caeea-0957-45cf-b1b0-6b45dd2f36df/ENCFF765RTN.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal pelvis tissue male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR580OAH Peak\ track wgEncodeReg4Epigenetics_ENCFF765RTN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF978GGB ENCSR731LHZ Signal bigWig K562 E4F1 ENCSR731LHZ signal 2 4015 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/3fdad15f-033d-497d-a31f-31c2092374bf/ENCFF978GGB.bigWig\ color 254,75,173\ longLabel K562 E4F1 ENCSR731LHZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR731LHZ Signal\ track wgEncodeReg4TfChip_ENCFF978GGB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF705DDM ENCSR580OAH Signal bigWig Renal pelvis tissue male embryo 91 days DNase signal 2 4016 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/abc431fe-81af-4e09-a605-7447926d6982/ENCFF705DDM.bigWig\ color 6,218,147\ longLabel Renal pelvis tissue male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR580OAH Signal\ track wgEncodeReg4Epigenetics_ENCFF705DDM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF689IBZ ENCSR731LZB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF788P ZNF788 peaks 4 4016 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d88b396f-de7f-4c85-b81d-d5df498d6260/ENCFF689IBZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF788P ZNF788 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR580RIQ Peak\ track wgEncodeReg4Epigenetics_ENCFF302HBF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF838TLR ENCSR731LZB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF788P ZNF788 ENCSR731LZB signal 2 4017 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/bf6a59ba-2014-47a4-be8f-3c8fc3ade7e3/ENCFF838TLR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF788P ZNF788 ENCSR731LZB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR731LZB Signal\ track wgEncodeReg4TfChip_ENCFF838TLR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF834IHE ENCSR580RIQ Signal bigWig Middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 4018 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/35d6f28f-7217-4229-af6c-829b4dca0bce/ENCFF834IHE.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR580RIQ Signal\ track wgEncodeReg4Epigenetics_ENCFF834IHE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF817WHL ENCSR731UPJ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP41 ZFP41 peaks 4 4018 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/25fde2d4-8ad7-4461-92cc-ccca3055cf94/ENCFF817WHL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP41 ZFP41 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR581RSO Peak\ track wgEncodeReg4Epigenetics_ENCFF235EQV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF153LJW ENCSR734WFB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF697 ZNF697 peaks 4 4024 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/604e3519-4e01-469d-bdcc-e27a87ff2ea5/ENCFF153LJW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF697 ZNF697 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582IPV Peak\ track wgEncodeReg4Epigenetics_ENCFF759NDV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF749ERP ENCSR735KEY Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA1 peaks 4 4026 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/08/ae88786d-bd6f-4bb0-b5fb-e8adf2cad732/ENCFF749ERP.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR735KEY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF749ERP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF625DUL ENCSR582IPV Signal bigWig Lung tissue embryo 80 days and male embryo 76 days DNase signal 2 4027 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/75c467b5-f5fb-4599-a0ed-18e9591d412d/ENCFF625DUL.bigWig\ color 6,218,147\ longLabel Lung tissue embryo 80 days and male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582IPV Signal\ track wgEncodeReg4Epigenetics_ENCFF625DUL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF033XXZ ENCSR735KEY Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA1 ENCSR735KEY signal 2 4027 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/b29ac637-c42f-4cba-b506-3c9e2ad924d5/ENCFF033XXZ.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) FOXA1 ENCSR735KEY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR735KEY Signal\ track wgEncodeReg4TfChip_ENCFF033XXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF414KCF ENCSR582MTM Peak bigBed 5 Lower leg skin tissue male adult 37 years CTCF peak 4 4028 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a0060f7a-f33f-4588-8ddf-0dcc392b83d1/ENCFF414KCF.bigBed\ color 0,176,240\ labelFields none\ longLabel Lower leg skin tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582MTM Peak\ track wgEncodeReg4Epigenetics_ENCFF414KCF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF188CXN ENCSR735VJE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LBX2 LBX2 peaks 4 4028 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/f59b6db7-e98d-48e0-bc99-98b6a50a8ed1/ENCFF188CXN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LBX2 LBX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR735VJE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF188CXN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF838CRU ENCSR582MTM Signal bigWig Lower leg skin tissue male adult 37 years CTCF signal 2 4029 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d3ce988c-89cf-491a-9d18-d8a9f9780061/ENCFF838CRU.bigWig\ color 0,176,240\ longLabel Lower leg skin tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582MTM Signal\ track wgEncodeReg4Epigenetics_ENCFF838CRU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF458LVH ENCSR735VJE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LBX2 LBX2 ENCSR735VJE signal 2 4029 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/224cdfdf-76fa-4e2d-a428-ef41afbf85ec/ENCFF458LVH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LBX2 LBX2 ENCSR735VJE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR735VJE Signal\ track wgEncodeReg4TfChip_ENCFF458LVH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF401HEA ENCSR582MYC Peak bigBed 5 Effector memory CD8-positive, alpha-beta T cell male adult 36 years DNase peak 4 4030 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/f8820fab-9698-49bc-9f00-cff43d50e92b/ENCFF401HEA.bigBed\ color 6,218,147\ labelFields none\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 36 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582MYC Peak\ track wgEncodeReg4Epigenetics_ENCFF401HEA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF130MBW ENCSR736BUG Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) EGR1 peaks 4 4030 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/0b3af661-d7bc-4f51-b3c7-76aa71bc38db/ENCFF130MBW.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) EGR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR736BUG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF130MBW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF220PZT ENCSR582MYC Signal bigWig Effector memory CD8-positive, alpha-beta T cell male adult 36 years DNase signal 2 4031 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/63ec0a90-692e-455c-9dac-2d599ef1dd7b/ENCFF220PZT.bigWig\ color 6,218,147\ longLabel Effector memory CD8-positive, alpha-beta T cell male adult 36 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582MYC Signal\ track wgEncodeReg4Epigenetics_ENCFF220PZT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF157YUU ENCSR736BUG Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) EGR1 ENCSR736BUG signal 2 4031 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/294ed39d-32d6-45cb-9447-aaf1179de6f9/ENCFF157YUU.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) EGR1 ENCSR736BUG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR736BUG Signal\ track wgEncodeReg4TfChip_ENCFF157YUU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF608WCJ ENCSR582NPJ Peak bigBed 5 K562 treated with 1 μM Methotrexate for 48 hours ATAC peak 4 4032 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/181858f8-848d-47bd-b397-ff9ce18253e3/ENCFF608WCJ.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM Methotrexate for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582NPJ Peak\ track wgEncodeReg4Epigenetics_ENCFF608WCJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF696EWL ENCSR736PZW Peak bigBed 5 Left lung tissue female child (16 years) CTCF peaks 4 4032 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/3f6d37ff-2c8c-4d38-9613-1903c924fca1/ENCFF696EWL.bigBed\ labelFields none\ longLabel Left lung tissue female child (16 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR736PZW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF696EWL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF439EED ENCSR582NPJ Signal bigWig K562 treated with 1 μM Methotrexate for 48 hours ATAC signal 2 4033 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/217f7f6e-980d-40d5-9877-7d2eaf8a9d33/ENCFF439EED.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM Methotrexate for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582NPJ Signal\ track wgEncodeReg4Epigenetics_ENCFF439EED\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF975RFH ENCSR736PZW Signal bigWig Left lung tissue female child (16 years) CTCF ENCSR736PZW signal 2 4033 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/47e3b68d-07af-421c-b4b9-076dd78c9b64/ENCFF975RFH.bigWig\ color 130,163,45\ longLabel Left lung tissue female child (16 years) CTCF ENCSR736PZW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR736PZW Signal\ track wgEncodeReg4TfChip_ENCFF975RFH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF071SAP ENCSR582QEW Peak bigBed 5 Effector memory CD4-positive, alpha-beta T cell female adult 25 years DNase peak 4 4034 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/a85e50e7-0319-4bab-8363-60ca5a129100/ENCFF071SAP.bigBed\ color 6,218,147\ labelFields none\ longLabel Effector memory CD4-positive, alpha-beta T cell female adult 25 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR582QEW Peak\ track wgEncodeReg4Epigenetics_ENCFF071SAP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF399UNK ENCSR737LTZ Peak bigBed 5 K562 MYNN peaks 4 4034 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/cb9d31b9-8c4c-4458-aae1-5056c4a76a8a/ENCFF399UNK.bigBed\ labelFields none\ longLabel K562 MYNN peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR584RKY Peak\ track wgEncodeReg4Epigenetics_ENCFF512MBR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF884XLS ENCSR740GKG Signal bigWig Cognitive impairment; middle frontal area 46 tissue female adult (86 years) CTCF ENCSR740GKG signal 2 4043 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/da51d2c0-afd8-4cb5-a1c2-f5f7b65a8585/ENCFF884XLS.bigWig\ color 155,155,18\ longLabel Cognitive impairment; middle frontal area 46 tissue female adult (86 years) CTCF ENCSR740GKG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR740GKG Signal\ track wgEncodeReg4TfChip_ENCFF884XLS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF436OWL ENCSR584RKY Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 4044 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/edb05085-393a-4e53-bac6-68683dc78ef2/ENCFF436OWL.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR584RKY Signal\ track wgEncodeReg4Epigenetics_ENCFF436OWL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF419VIM ENCSR740NPG Peak bigBed 5 K562 stably expressing BACH1 BACH1 peaks 4 4044 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/9ae2a7e5-e0ca-48be-8363-2a265ad8063e/ENCFF419VIM.bigBed\ labelFields none\ longLabel K562 stably expressing BACH1 BACH1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR585CGU Peak\ track wgEncodeReg4Epigenetics_ENCFF647KRH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF146XNW ENCSR740NPG Signal bigWig K562 stably expressing BACH1 BACH1 ENCSR740NPG signal 2 4045 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a0c9c7d3-9b44-4276-bc0c-049a926cc75c/ENCFF146XNW.bigWig\ color 254,75,173\ longLabel K562 stably expressing BACH1 BACH1 ENCSR740NPG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR740NPG Signal\ track wgEncodeReg4TfChip_ENCFF146XNW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF415VWC ENCSR585CGU Signal bigWig Muscle of back tissue female embryo 105 days DNase signal 2 4046 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/95427a9d-f64f-4e0d-ab2c-5c6ec5afbba9/ENCFF415VWC.bigWig\ color 6,218,147\ longLabel Muscle of back tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR585CGU Signal\ track wgEncodeReg4Epigenetics_ENCFF415VWC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF350YLO ENCSR741TTE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JRK JRK peaks 4 4046 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/49ee4638-3408-46f6-9051-ce389c0a1046/ENCFF350YLO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JRK JRK peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR585JVS Peak\ track wgEncodeReg4Epigenetics_ENCFF577TID\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF423JWV ENCSR741TTE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JRK JRK ENCSR741TTE signal 2 4047 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/4318965b-1c83-4b9d-9c39-8d86ee9c15e5/ENCFF423JWV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JRK JRK ENCSR741TTE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR741TTE Signal\ track wgEncodeReg4TfChip_ENCFF423JWV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF359FNN ENCSR585JVS Signal bigWig Heart right ventricle tissue male adult 69 years CTCF signal 2 4048 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/f309eabf-a0ba-48d3-8da9-645520b7dbc3/ENCFF359FNN.bigWig\ color 0,176,240\ longLabel Heart right ventricle tissue male adult 69 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR585JVS Signal\ track wgEncodeReg4Epigenetics_ENCFF359FNN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF535JLP ENCSR742DAU Peak bigBed 5 WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens HMGA2 HMGA2 peaks 4 4048 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/06/491416d9-93e4-48db-b132-1867a34ceeaa/ENCFF535JLP.bigBed\ labelFields none\ longLabel WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens HMGA2 HMGA2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR591PIX Peak\ track wgEncodeReg4Epigenetics_ENCFF882XTL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF867ZNR ENCSR748HJZ Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB5 HOXB5 ENCSR748HJZ signal 2 4069 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/f5be9a2d-4176-420f-a616-710f15ee8922/ENCFF867ZNR.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB5 HOXB5 ENCSR748HJZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR748HJZ Signal\ track wgEncodeReg4TfChip_ENCFF867ZNR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF757YRZ ENCSR591PIX Signal bigWig Panc1 ATAC signal 2 4070 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/5de0d9a7-ad11-408e-b54a-96895bcd6646/ENCFF757YRZ.bigWig\ color 2,199,185\ longLabel Panc1 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR591PIX Signal\ track wgEncodeReg4Epigenetics_ENCFF757YRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF750AXF ENCSR750LYM Peak bigBed 5 K562 stably expressing NR2C2 NR2C2 peaks 4 4070 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/23057f60-b7dc-4687-ba8a-89c5b3f1e2cd/ENCFF750AXF.bigBed\ labelFields none\ longLabel K562 stably expressing NR2C2 NR2C2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593INW Peak\ track wgEncodeReg4Epigenetics_ENCFF164QHJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF690LIN ENCSR750LYM Signal bigWig K562 stably expressing NR2C2 NR2C2 ENCSR750LYM signal 2 4071 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/e867bf51-f84c-4b39-b44d-e80eb4cc6676/ENCFF690LIN.bigWig\ color 254,75,173\ longLabel K562 stably expressing NR2C2 NR2C2 ENCSR750LYM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR750LYM Signal\ track wgEncodeReg4TfChip_ENCFF690LIN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF948AUZ ENCSR593INW Signal bigWig Spleen tissue male adult 54 years H3K27ac signal 2 4072 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/0dd05238-d209-460b-bcca-a90cd9f85a8d/ENCFF948AUZ.bigWig\ color 181,145,0\ longLabel Spleen tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593INW Signal\ track wgEncodeReg4Epigenetics_ENCFF948AUZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF304IEJ ENCSR750OWO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1 HDAC1 peaks 4 4072 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/d3de290d-fbeb-46f1-b28a-87b15f48914d/ENCFF304IEJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1 HDAC1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593KDJ Peak\ track wgEncodeReg4Epigenetics_ENCFF048SGQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF112LIJ ENCSR750OWO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1 HDAC1 ENCSR750OWO signal 2 4073 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/8372e4d4-430b-4ed8-8173-f9ff9ed937a8/ENCFF112LIJ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1 HDAC1 ENCSR750OWO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR750OWO Signal\ track wgEncodeReg4TfChip_ENCFF112LIJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF337EUB ENCSR593KDJ Signal bigWig Right atrium auricular region tissue female adult 53 years H3K27ac signal 2 4074 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/6b1750f4-2f9d-4048-8441-3deac9b8d975/ENCFF337EUB.bigWig\ color 181,145,0\ longLabel Right atrium auricular region tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593KDJ Signal\ track wgEncodeReg4Epigenetics_ENCFF337EUB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF840XEZ ENCSR753GIA Peak bigBed 5 HEK293T TARDBP peaks 4 4074 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/f09fc8a8-b6e7-4fbd-b959-462024c87b6d/ENCFF840XEZ.bigBed\ labelFields none\ longLabel HEK293T TARDBP peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593LTJ Peak\ track wgEncodeReg4Epigenetics_ENCFF190AXR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF751JWA ENCSR753GIA Signal bigWig HEK293T TARDBP ENCSR753GIA signal 2 4075 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/f223a846-1f8c-402b-98d8-ca818322b2ae/ENCFF751JWA.bigWig\ color 92,161,153\ longLabel HEK293T TARDBP ENCSR753GIA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR753GIA Signal\ track wgEncodeReg4TfChip_ENCFF751JWA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF039CCA ENCSR593LTJ Signal bigWig Trophoblast cell embryo 17 weeks and embryo 18 weeks DNase signal 2 4076 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/e4ec84ed-5232-4ae5-9f20-f22ce47408c6/ENCFF039CCA.bigWig\ color 6,218,147\ longLabel Trophoblast cell embryo 17 weeks and embryo 18 weeks DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593LTJ Signal\ track wgEncodeReg4Epigenetics_ENCFF039CCA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF749IAK ENCSR753KZY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SATB2 SATB2 peaks 4 4076 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/8995eba3-c0a3-49b0-8d6e-7051e7dc8503/ENCFF749IAK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SATB2 SATB2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593OUE Peak\ track wgEncodeReg4Epigenetics_ENCFF722YOG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF431TPT ENCSR753KZY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SATB2 SATB2 ENCSR753KZY signal 2 4077 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/002c6fc2-e1c9-4336-ad89-f8027aa67035/ENCFF431TPT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SATB2 SATB2 ENCSR753KZY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR753KZY Signal\ track wgEncodeReg4TfChip_ENCFF431TPT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF393YDE ENCSR593OUE Signal bigWig Activated CD4 positive, naive alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 4078 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/d5962b86-5d16-4da4-bef8-de9b16d4b511/ENCFF393YDE.bigWig\ color 6,218,147\ longLabel Activated CD4 positive, naive alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR593OUE Signal\ track wgEncodeReg4Epigenetics_ENCFF393YDE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF919VBQ ENCSR753RME Peak bigBed 5 Testis tissue male adult (37 years) CTCF peaks 4 4078 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/3aaaddb2-1947-44a5-9a9e-a4b086df2fe5/ENCFF919VBQ.bigBed\ labelFields none\ longLabel Testis tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR753RME Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF919VBQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF298FXY ENCSR594NOE Signal bigWig RPMI8226 DNase signal 2 4079 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/abacfe03-3be3-44d9-8b1e-75425d5b3ff5/ENCFF298FXY.bigWig\ color 6,218,147\ longLabel RPMI8226 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR594NOE Signal\ track wgEncodeReg4Epigenetics_ENCFF298FXY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF453LVK ENCSR753RME Signal bigWig Testis tissue male adult (37 years) CTCF ENCSR753RME signal 2 4079 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/4305bb69-dcf3-4a74-8d3d-85b0ccf10b12/ENCFF453LVK.bigWig\ color 139,140,140\ longLabel Testis tissue male adult (37 years) CTCF ENCSR753RME signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR753RME Signal\ track wgEncodeReg4TfChip_ENCFF453LVK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF307PRR ENCSR594NSU Peak bigBed 5 Gastrocnemius medialis tissue male adult 37 years CTCF peak 4 4080 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/507aa3be-defe-42f3-bef9-73b8ae8e5c26/ENCFF307PRR.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastrocnemius medialis tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR594NSU Peak\ track wgEncodeReg4Epigenetics_ENCFF307PRR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF425PQK ENCSR754DWU Peak bigBed 5 Ovary tissue female adult (53 years) POLR2A peaks 4 4080 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/87be7def-a81d-4fd2-ab15-e2a69ca75246/ENCFF425PQK.bigBed\ labelFields none\ longLabel Ovary tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754DWU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF425PQK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF070MOG ENCSR594NSU Signal bigWig Gastrocnemius medialis tissue male adult 37 years CTCF signal 2 4081 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/215c937e-ae03-459c-ba3f-dbba0d5501e2/ENCFF070MOG.bigWig\ color 0,176,240\ longLabel Gastrocnemius medialis tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR594NSU Signal\ track wgEncodeReg4Epigenetics_ENCFF070MOG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF258INE ENCSR754DWU Signal bigWig Ovary tissue female adult (53 years) POLR2A ENCSR754DWU signal 2 4081 161 126 151 208 190 203 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/0f1b6baf-e27a-4cc9-aacd-e03e1a830f53/ENCFF258INE.bigWig\ color 161,126,151\ longLabel Ovary tissue female adult (53 years) POLR2A ENCSR754DWU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754DWU Signal\ track wgEncodeReg4TfChip_ENCFF258INE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF831NSP ENCSR594OWA Peak bigBed 5 Small intestine tissue male embryo 91 days DNase peak 4 4082 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/89eb26eb-e2a5-4f5b-9635-bc281da335d5/ENCFF831NSP.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754GYI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF174EMC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF729PQU ENCSR594OWA Signal bigWig Small intestine tissue male embryo 91 days DNase signal 2 4083 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/40d67a71-3e91-4d6a-9a08-c2e25434850b/ENCFF729PQU.bigWig\ color 6,218,147\ longLabel Small intestine tissue male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR594OWA Signal\ track wgEncodeReg4Epigenetics_ENCFF729PQU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF187JXU ENCSR754GYI Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens BNC2 treated with 6 μM all-trans-retinoic acid for 48 hours BNC2 ENCSR754GYI signal 2 4083 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/7ac885d3-6cb3-4943-96fc-e84f38e565c5/ENCFF187JXU.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens BNC2 treated with 6 μM all-trans-retinoic acid for 48 hours BNC2 ENCSR754GYI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754GYI Signal\ track wgEncodeReg4TfChip_ENCFF187JXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF911PSP ENCSR594TMY Peak bigBed 5 HG03521 ATAC peak 4 4084 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/4655cb07-b529-455c-9b8e-b7e1b1875b3d/ENCFF911PSP.bigBed\ color 2,199,185\ longLabel HG03521 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR594TMY Peak\ track wgEncodeReg4Epigenetics_ENCFF911PSP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF491GTR ENCSR754KCC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A KDM2A peaks 4 4084 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/88169d98-edae-41b0-b811-f9114fdc299d/ENCFF491GTR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A KDM2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754KCC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF491GTR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF435ZPU ENCSR594TMY Signal bigWig HG03521 ATAC signal 2 4085 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/214d12be-287c-427e-896c-32f87c2e314d/ENCFF435ZPU.bigWig\ color 2,199,185\ longLabel HG03521 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR594TMY Signal\ track wgEncodeReg4Epigenetics_ENCFF435ZPU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF189WKN ENCSR754KCC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A KDM2A ENCSR754KCC signal 2 4085 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/a00d5335-050a-45cd-8264-d64ebf21dde3/ENCFF189WKN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A KDM2A ENCSR754KCC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754KCC Signal\ track wgEncodeReg4TfChip_ENCFF189WKN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF241IDS ENCSR595CME Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak 4 4086 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/96d53582-44cf-4de2-87ba-87041809d3b9/ENCFF241IDS.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595CME Peak\ track wgEncodeReg4Epigenetics_ENCFF241IDS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF631IPX ENCSR754MUD Peak bigBed 5 HepG2 SKI peaks 4 4086 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/dd487882-52b8-4380-bdbc-a70a2e811827/ENCFF631IPX.bigBed\ labelFields none\ longLabel HepG2 SKI peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754MUD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF631IPX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF411KFC ENCSR595CME Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal 2 4087 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/32e9d333-87c3-42f6-a072-2190ce2c944b/ENCFF411KFC.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595CME Signal\ track wgEncodeReg4Epigenetics_ENCFF411KFC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF587ZKO ENCSR754MUD Signal bigWig HepG2 SKI ENCSR754MUD signal 2 4087 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/109493a5-8dbf-4fb7-a423-3256beeb6865/ENCFF587ZKO.bigWig\ color 137,152,82\ longLabel HepG2 SKI ENCSR754MUD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754MUD Signal\ track wgEncodeReg4TfChip_ENCFF587ZKO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF086IEQ ENCSR595CSH Peak bigBed 5 Brain tissue embryo 56 days and male embryo 58 days DNase peak 4 4088 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/bf34ef7e-6a7a-4f17-866f-a02d79421abf/ENCFF086IEQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue embryo 56 days and male embryo 58 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595CSH Peak\ track wgEncodeReg4Epigenetics_ENCFF086IEQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF090MHG ENCSR754SOI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529 ZNF529 peaks 4 4088 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/ebc55a0e-478c-45ce-973f-81219dd272cf/ENCFF090MHG.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529 ZNF529 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754SOI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF090MHG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF712UVC ENCSR595CSH Signal bigWig Brain tissue embryo 56 days and male embryo 58 days DNase signal 2 4089 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/559d9367-074a-498b-a17a-41714f85394b/ENCFF712UVC.bigWig\ color 6,218,147\ longLabel Brain tissue embryo 56 days and male embryo 58 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595CSH Signal\ track wgEncodeReg4Epigenetics_ENCFF712UVC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF152JWQ ENCSR754SOI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529 ZNF529 ENCSR754SOI signal 2 4089 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/eb2ccd25-0faf-4bfb-a1d4-187b6b20fd42/ENCFF152JWQ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529 ZNF529 ENCSR754SOI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR754SOI Signal\ track wgEncodeReg4TfChip_ENCFF152JWQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF967YRI ENCSR595DQM Peak bigBed 5 Aorta tissue female adult 59 years DNase peak 4 4090 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/d5e0a3ac-7244-4d15-9d81-2830d12c15cf/ENCFF967YRI.bigBed\ color 6,218,147\ labelFields none\ longLabel Aorta tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595DQM Peak\ track wgEncodeReg4Epigenetics_ENCFF967YRI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF562MJV ENCSR755WXO Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (89 years) CTCF peaks 4 4090 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/5feaf83d-920c-4e64-b2f0-6ff8e69b9b72/ENCFF562MJV.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (89 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR755WXO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF562MJV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF192IUF ENCSR595DQM Signal bigWig Aorta tissue female adult 59 years DNase signal 2 4091 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/4211b2de-b531-436e-a283-786edcc205f1/ENCFF192IUF.bigWig\ color 6,218,147\ longLabel Aorta tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595DQM Signal\ track wgEncodeReg4Epigenetics_ENCFF192IUF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF812RLY ENCSR755WXO Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (89 years) CTCF ENCSR755WXO signal 2 4091 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/92218433-e06a-4af8-8170-1d63bc039f9b/ENCFF812RLY.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (89 years) CTCF ENCSR755WXO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR755WXO Signal\ track wgEncodeReg4TfChip_ENCFF812RLY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF666HLD ENCSR595HWK Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak 4 4092 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/f506436f-9f26-4a67-b80e-ccc9cc561c72/ENCFF666HLD.bigBed\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595HWK Peak\ track wgEncodeReg4Epigenetics_ENCFF666HLD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF298KPI ENCSR755ZAY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740 ZNF740 peaks 4 4092 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/bb6b58ff-ca7f-4cdd-97e2-9c7481475a2b/ENCFF298KPI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740 ZNF740 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR755ZAY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF298KPI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF435JQR ENCSR595HWK Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal 2 4093 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/750ad193-a091-41f5-a6b5-f1631b875054/ENCFF435JQR.bigWig\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595HWK Signal\ track wgEncodeReg4Epigenetics_ENCFF435JQR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF477PRQ ENCSR755ZAY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740 ZNF740 ENCSR755ZAY signal 2 4093 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/9d47aa94-8ef3-4b45-be03-0477c505ca63/ENCFF477PRQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF740 ZNF740 ENCSR755ZAY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR755ZAY Signal\ track wgEncodeReg4TfChip_ENCFF477PRQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF410XLN ENCSR595HZQ Peak bigBed 5 Pancreas tissue female adult 30 years DNase peak 4 4094 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/1e20e44e-760d-4ac5-abfb-27618ae5b2a0/ENCFF410XLN.bigBed\ color 6,218,147\ labelFields none\ longLabel Pancreas tissue female adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595HZQ Peak\ track wgEncodeReg4Epigenetics_ENCFF410XLN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF671RTH ENCSR756CJS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850 ZNF850 peaks 4 4094 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/3611dcc1-81bc-451e-9112-074b31d4d06c/ENCFF671RTH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850 ZNF850 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756CJS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF671RTH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF345NSW ENCSR595HZQ Signal bigWig Pancreas tissue female adult 30 years DNase signal 2 4095 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/be91f54f-70c9-434a-ae1d-f719b22b6ff0/ENCFF345NSW.bigWig\ color 6,218,147\ longLabel Pancreas tissue female adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595HZQ Signal\ track wgEncodeReg4Epigenetics_ENCFF345NSW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF833FRP ENCSR756CJS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850 ZNF850 ENCSR756CJS signal 2 4095 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/a67408ef-067c-42e7-a891-3248cac5e925/ENCFF833FRP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850 ZNF850 ENCSR756CJS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756CJS Signal\ track wgEncodeReg4TfChip_ENCFF833FRP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF570PEB ENCSR595KPI Peak bigBed 5 UCSF-4 H3K4me3 peak 4 4096 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e0c004c4-0836-4831-9f31-14d609ff305b/ENCFF570PEB.bigBed\ color 255,0,0\ longLabel UCSF-4 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595KPI Peak\ track wgEncodeReg4Epigenetics_ENCFF570PEB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF198TWE ENCSR756KRS Peak bigBed 5 Suprapubic skin tissue female adult (51 years) CTCF peaks 4 4096 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f2d20acb-809d-482c-9a4a-7db7ecda16b8/ENCFF198TWE.bigBed\ labelFields none\ longLabel Suprapubic skin tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756KRS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF198TWE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF548YPZ ENCSR595KPI Signal bigWig UCSF-4 H3K4me3 signal 2 4097 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/a494b5eb-b3c9-4b30-a7c3-2ebbc209f11f/ENCFF548YPZ.bigWig\ color 255,0,0\ longLabel UCSF-4 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595KPI Signal\ track wgEncodeReg4Epigenetics_ENCFF548YPZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF580ZIB ENCSR756KRS Signal bigWig Suprapubic skin tissue female adult (51 years) CTCF ENCSR756KRS signal 2 4097 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/f7d152b2-c0a9-4895-90ae-30ed737df08e/ENCFF580ZIB.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (51 years) CTCF ENCSR756KRS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756KRS Signal\ track wgEncodeReg4TfChip_ENCFF580ZIB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF857ROR ENCSR595THL Peak bigBed 5 Activated T-helper 1 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak 4 4098 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/dd7a13f8-b2f6-4367-8720-435aa7f70ee6/ENCFF857ROR.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-helper 1 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595THL Peak\ track wgEncodeReg4Epigenetics_ENCFF857ROR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF548HIW ENCSR756SZU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF13 KLF13 peaks 4 4098 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/dfbb877f-58c8-45db-851d-aaaa655e91da/ENCFF548HIW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF13 KLF13 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756SZU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF548HIW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF328WBJ ENCSR595THL Signal bigWig Activated T-helper 1 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 4099 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ad7c2a81-0799-476d-a51b-5ff1ed0c20b4/ENCFF328WBJ.bigWig\ color 6,218,147\ longLabel Activated T-helper 1 cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR595THL Signal\ track wgEncodeReg4Epigenetics_ENCFF328WBJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF753WYQ ENCSR756SZU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF13 KLF13 ENCSR756SZU signal 2 4099 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/c150d418-fe9f-44dd-b3d6-cd09ea348404/ENCFF753WYQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF13 KLF13 ENCSR756SZU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756SZU Signal\ track wgEncodeReg4TfChip_ENCFF753WYQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF129XIT ENCSR596FCE Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years H3K27ac peak 4 4100 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/530af945-b7f5-48b9-9d3a-8dc728307aa4/ENCFF129XIT.bigBed\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR596FCE Peak\ track wgEncodeReg4Epigenetics_ENCFF129XIT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF586TZH ENCSR756UNW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548 ZNF548 peaks 4 4100 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/13bcc031-9da9-457c-89a9-b4f34366e7fe/ENCFF586TZH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548 ZNF548 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756UNW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF586TZH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF726SZQ ENCSR596FCE Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years H3K27ac signal 2 4101 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/4ac5b09d-96f5-4f6a-9d75-38c0c095428d/ENCFF726SZQ.bigWig\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 38 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR596FCE Signal\ track wgEncodeReg4Epigenetics_ENCFF726SZQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF907WES ENCSR756UNW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548 ZNF548 ENCSR756UNW signal 2 4101 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/e936309a-a1e6-4e67-b16b-56b957a276c9/ENCFF907WES.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548 ZNF548 ENCSR756UNW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR756UNW Signal\ track wgEncodeReg4TfChip_ENCFF907WES\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF526SWP ENCSR596PFU Peak bigBed 5 Body of pancreas tissue male adult 54 years H3K27ac peak 4 4102 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/9dcc74d9-e14c-48e5-abf1-3feb6c954403/ENCFF526SWP.bigBed\ color 181,145,0\ longLabel Body of pancreas tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR767HDQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF111ABD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF061WIY ENCSR605NNZ Peak bigBed 5 Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K4me3 peak 4 4142 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/9be4ae0c-c2ab-4d0c-b5a5-533d5e493f81/ENCFF061WIY.bigBed\ color 255,0,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR605NNZ Peak\ track wgEncodeReg4Epigenetics_ENCFF061WIY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF799EYQ ENCSR767HDQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CERS6 CERS6 ENCSR767HDQ signal 2 4142 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/36ad03e6-89db-47db-b71b-885f5643eded/ENCFF799EYQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CERS6 CERS6 ENCSR767HDQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR767HDQ Signal\ track wgEncodeReg4TfChip_ENCFF799EYQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF162OOB ENCSR605NNZ Signal bigWig Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K4me3 signal 2 4143 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2ed87d6f-8414-478f-8c75-43e1f0ef7b08/ENCFF162OOB.bigWig\ color 255,0,0\ longLabel Subcutaneous abdominal adipose tissue tissue nuclear fraction female adult 49 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR605NNZ Signal\ track wgEncodeReg4Epigenetics_ENCFF162OOB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF095FBN ENCSR767NGL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL1 FOSL1 peaks 4 4143 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/5496b160-031e-4fda-8a89-7277a8f10586/ENCFF095FBN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL1 FOSL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR767NGL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF095FBN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF334VPP ENCSR605QAV Peak bigBed 5 Adrenal gland tissue female adult 53 years H3K4me3 peak 4 4144 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/4a7cce0e-7562-434a-9c3e-fdc9a54ed47c/ENCFF334VPP.bigBed\ color 255,0,0\ longLabel Adrenal gland tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR605QAV Peak\ track wgEncodeReg4Epigenetics_ENCFF334VPP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF441PNV ENCSR767NGL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL1 FOSL1 ENCSR767NGL signal 2 4144 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/35bf33d4-a773-4aca-b9f6-948a62eedf4a/ENCFF441PNV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOSL1 FOSL1 ENCSR767NGL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR767NGL Signal\ track wgEncodeReg4TfChip_ENCFF441PNV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF827GEQ ENCSR605QAV Signal bigWig Adrenal gland tissue female adult 53 years H3K4me3 signal 2 4145 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/c95c5769-dbaf-49a2-aea5-7924869c489f/ENCFF827GEQ.bigWig\ color 255,0,0\ longLabel Adrenal gland tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR605QAV Signal\ track wgEncodeReg4Epigenetics_ENCFF827GEQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF406QFI ENCSR767XSF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF555 ZNF555 peaks 4 4145 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/805e392b-79ea-43bb-b0d7-e6d84c9f8b72/ENCFF406QFI.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF555 ZNF555 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR767XSF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF406QFI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF725CJJ ENCSR605SQL Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase peak 4 4146 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/edcdbcc0-20c2-4de5-8324-f3c70e8b14f4/ENCFF725CJJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR605SQL Peak\ track wgEncodeReg4Epigenetics_ENCFF725CJJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF832FHF ENCSR767XSF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF555 ZNF555 ENCSR767XSF signal 2 4146 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/f389bbfc-7c5c-40ef-ba8b-e37165ee8684/ENCFF832FHF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF555 ZNF555 ENCSR767XSF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR767XSF Signal\ track wgEncodeReg4TfChip_ENCFF832FHF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF883QIZ ENCSR605SQL Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase signal 2 4147 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/3eca3ab6-f451-4cee-8d85-71d654e54d12/ENCFF883QIZ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR605SQL Signal\ track wgEncodeReg4Epigenetics_ENCFF883QIZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF062DPE ENCSR768HOH Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF324 ZNF324 peaks 4 4147 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/7b9adde3-1291-4784-855d-eb2555a31e59/ENCFF062DPE.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF324 ZNF324 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR768HOH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF062DPE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF265DWK ENCSR606QDB Peak bigBed 5 Middle frontal area 46 tissue male adult 82 years DNase peak 4 4148 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/c5793f31-5ad4-41fb-b51e-5e19f318dcfe/ENCFF265DWK.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606QDB Peak\ track wgEncodeReg4Epigenetics_ENCFF265DWK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF515AKR ENCSR768HOH Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF324 ZNF324 ENCSR768HOH signal 2 4148 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/ced21d41-8f27-44fc-bd73-e17d30c5dad0/ENCFF515AKR.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF324 ZNF324 ENCSR768HOH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR768HOH Signal\ track wgEncodeReg4TfChip_ENCFF515AKR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF571QPS ENCSR606QDB Signal bigWig Middle frontal area 46 tissue male adult 82 years DNase signal 2 4149 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/0afbf227-c072-484e-913e-dc626f478dc8/ENCFF571QPS.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue male adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606QDB Signal\ track wgEncodeReg4Epigenetics_ENCFF571QPS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF898STB ENCSR768LIO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OVOL3 OVOL3 peaks 4 4149 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/2916180e-4247-442c-be02-cc2927f0885f/ENCFF898STB.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OVOL3 OVOL3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR768LIO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF898STB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF057QBG ENCSR606TNN Peak bigBed 5 Vagina tissue female adult 53 years CTCF peak 4 4150 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/9bb72edf-c3f6-4ba8-9473-677f9171611d/ENCFF057QBG.bigBed\ color 0,176,240\ labelFields none\ longLabel Vagina tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606TNN Peak\ track wgEncodeReg4Epigenetics_ENCFF057QBG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF401SPR ENCSR768LIO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OVOL3 OVOL3 ENCSR768LIO signal 2 4150 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/31cc0e9f-cdbd-45b4-b4b6-9c8ac58f29d2/ENCFF401SPR.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens OVOL3 OVOL3 ENCSR768LIO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR768LIO Signal\ track wgEncodeReg4TfChip_ENCFF401SPR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF704JSE ENCSR606TNN Signal bigWig Vagina tissue female adult 53 years CTCF signal 2 4151 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a08359d1-b00e-4f71-b389-0e7b0cea1ae4/ENCFF704JSE.bigWig\ color 0,176,240\ longLabel Vagina tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606TNN Signal\ track wgEncodeReg4Epigenetics_ENCFF704JSE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF082YBI ENCSR768VNZ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN30 ZSCAN30 peaks 4 4151 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/5518acf4-9e9a-40d0-857b-507c38e76684/ENCFF082YBI.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN30 ZSCAN30 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR768VNZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF082YBI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF018SNZ ENCSR606UAR Peak bigBed 5 Renal pelvis tissue female embryo 96 days DNase peak 4 4152 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/2c3b5fc0-07d4-4c0f-8f7a-d63553fd433d/ENCFF018SNZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal pelvis tissue female embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606UAR Peak\ track wgEncodeReg4Epigenetics_ENCFF018SNZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF150WES ENCSR768VNZ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN30 ZSCAN30 ENCSR768VNZ signal 2 4152 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/d0713456-5770-4f1a-a702-228b9ad7037a/ENCFF150WES.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN30 ZSCAN30 ENCSR768VNZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR768VNZ Signal\ track wgEncodeReg4TfChip_ENCFF150WES\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF674AFY ENCSR606UAR Signal bigWig Renal pelvis tissue female embryo 96 days DNase signal 2 4153 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/413c906b-3c87-46b1-9a3b-6171c33b2ddc/ENCFF674AFY.bigWig\ color 6,218,147\ longLabel Renal pelvis tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606UAR Signal\ track wgEncodeReg4Epigenetics_ENCFF674AFY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF008QTF ENCSR769CWW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 peaks 4 4153 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/684426dc-180d-498f-8e5f-39bdabd22575/ENCFF008QTF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR769CWW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF008QTF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF778UZM ENCSR606WJA Peak bigBed 5 Chorionic villus tissue male embryo 16 weeks H3K27ac peak 4 4154 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/a998fa89-5b6a-4081-af98-42ae536112a9/ENCFF778UZM.bigBed\ color 181,145,0\ longLabel Chorionic villus tissue male embryo 16 weeks H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606WJA Peak\ track wgEncodeReg4Epigenetics_ENCFF778UZM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF803JQQ ENCSR769CWW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 ENCSR769CWW signal 2 4154 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/5f814a2c-a2f2-4185-af78-23f554c2eb8f/ENCFF803JQQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 ATF6 ENCSR769CWW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR769CWW Signal\ track wgEncodeReg4TfChip_ENCFF803JQQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF873VQK ENCSR606WJA Signal bigWig Chorionic villus tissue male embryo 16 weeks H3K27ac signal 2 4155 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7b1bf4b9-a01d-4937-81d3-867921fa0f36/ENCFF873VQK.bigWig\ color 181,145,0\ longLabel Chorionic villus tissue male embryo 16 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR606WJA Signal\ track wgEncodeReg4Epigenetics_ENCFF873VQK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF471AZS ENCSR769WKR Peak bigBed 5 Transverse colon tissue female adult (53 years) CTCF peaks 4 4155 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/fac71942-e17f-428a-be04-f6d1772f0940/ENCFF471AZS.bigBed\ labelFields none\ longLabel Transverse colon tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR769WKR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF471AZS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF044ORX ENCSR607ARN Peak bigBed 5 Esophagus muscularis mucosa tissue female adult 53 years H3K4me3 peak 4 4156 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/f63c0fb9-dbab-44c8-9fb8-8c3e67e31202/ENCFF044ORX.bigBed\ color 255,0,0\ longLabel Esophagus muscularis mucosa tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607ARN Peak\ track wgEncodeReg4Epigenetics_ENCFF044ORX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF493XMW ENCSR769WKR Signal bigWig Transverse colon tissue female adult (53 years) CTCF ENCSR769WKR signal 2 4156 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/cdd89b70-afb5-4b25-8bc1-5b418a2c1bb4/ENCFF493XMW.bigWig\ color 86,86,36\ longLabel Transverse colon tissue female adult (53 years) CTCF ENCSR769WKR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR769WKR Signal\ track wgEncodeReg4TfChip_ENCFF493XMW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF586WBH ENCSR607ARN Signal bigWig Esophagus muscularis mucosa tissue female adult 53 years H3K4me3 signal 2 4157 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/8ac6cc39-d85d-4c03-9af5-f75684e8479c/ENCFF586WBH.bigWig\ color 255,0,0\ longLabel Esophagus muscularis mucosa tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607ARN Signal\ track wgEncodeReg4Epigenetics_ENCFF586WBH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF633ULY ENCSR770AOR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF3 ELF3 peaks 4 4157 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/fff631a8-3b0b-4b2e-8069-e497c6b024ab/ENCFF633ULY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF3 ELF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR770AOR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF633ULY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF770GTB ENCSR607BTF Peak bigBed 5 Right lobe of liver tissue male adult 45 years ATAC peak 4 4158 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/2a45cd27-3efb-4342-b045-9bfd079a1247/ENCFF770GTB.bigBed\ color 2,199,185\ longLabel Right lobe of liver tissue male adult 45 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607BTF Peak\ track wgEncodeReg4Epigenetics_ENCFF770GTB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF222FJX ENCSR770AOR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF3 ELF3 ENCSR770AOR signal 2 4158 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1eaed09b-0a09-40c9-8ef4-649be909932b/ENCFF222FJX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF3 ELF3 ENCSR770AOR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR770AOR Signal\ track wgEncodeReg4TfChip_ENCFF222FJX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF646EEM ENCSR607BTF Signal bigWig Right lobe of liver tissue male adult 45 years ATAC signal 2 4159 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/4ebb89fd-25b1-4c7c-b65c-b3d31862a6c4/ENCFF646EEM.bigWig\ color 2,199,185\ longLabel Right lobe of liver tissue male adult 45 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607BTF Signal\ track wgEncodeReg4Epigenetics_ENCFF646EEM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF678WUB ENCSR770IWO Peak bigBed 5 Adrenal gland tissue female adult (53 years) CTCF peaks 4 4159 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/02f889c2-3bc0-4fa7-9aa1-a974b792637b/ENCFF678WUB.bigBed\ labelFields none\ longLabel Adrenal gland tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR770IWO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF678WUB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF190XGG ENCSR607EJV Peak bigBed 5 Effector memory CD4-positive, alpha-beta T cell male adult 24 years DNase peak 4 4160 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/46d05fdb-d318-48cc-8e0b-6bdd133b7219/ENCFF190XGG.bigBed\ color 6,218,147\ labelFields none\ longLabel Effector memory CD4-positive, alpha-beta T cell male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607EJV Peak\ track wgEncodeReg4Epigenetics_ENCFF190XGG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF419QIY ENCSR770IWO Signal bigWig Adrenal gland tissue female adult (53 years) CTCF ENCSR770IWO signal 2 4160 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a1a3c5ff-6970-4894-8bfa-b0dbf670457d/ENCFF419QIY.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue female adult (53 years) CTCF ENCSR770IWO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR770IWO Signal\ track wgEncodeReg4TfChip_ENCFF419QIY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF692GFN ENCSR607EJV Signal bigWig Effector memory CD4-positive, alpha-beta T cell male adult 24 years DNase signal 2 4161 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/29752b27-5fda-4d5d-b893-107e6cdc9461/ENCFF692GFN.bigWig\ color 6,218,147\ longLabel Effector memory CD4-positive, alpha-beta T cell male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607EJV Signal\ track wgEncodeReg4Epigenetics_ENCFF692GFN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF859UHP ENCSR770PQN Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B BCL11B peaks 4 4161 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/595af135-c4c8-47fa-861d-8a3d704f45fb/ENCFF859UHP.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B BCL11B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR770PQN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF859UHP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF377XOL ENCSR607HIL Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak 4 4162 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/7e722eee-d279-44bf-a5aa-136eb127f5d8/ENCFF377XOL.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607HIL Peak\ track wgEncodeReg4Epigenetics_ENCFF377XOL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF381PRX ENCSR770PQN Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B BCL11B ENCSR770PQN signal 2 4162 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/62edeabd-d037-4800-aa83-268600e813dd/ENCFF381PRX.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens BCL11B BCL11B ENCSR770PQN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR770PQN Signal\ track wgEncodeReg4TfChip_ENCFF381PRX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF697IRZ ENCSR607HIL Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal 2 4163 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/5181a6b3-79fe-4e57-984a-f4b529502013/ENCFF697IRZ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607HIL Signal\ track wgEncodeReg4Epigenetics_ENCFF697IRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF160KZP ENCSR771GTF Peak bigBed 5 HepG2 SUZ12 peaks 4 4163 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/ba018ed4-b8eb-4877-a6c6-d07d8f251596/ENCFF160KZP.bigBed\ labelFields none\ longLabel HepG2 SUZ12 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR771GTF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF160KZP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF331FCL ENCSR607YIY Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 4164 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/1593d457-d011-4b26-a499-efa2353c7f8e/ENCFF331FCL.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607YIY Peak\ track wgEncodeReg4Epigenetics_ENCFF331FCL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF260LYD ENCSR771GTF Signal bigWig HepG2 SUZ12 ENCSR771GTF signal 2 4164 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/3f4c7acc-2a78-49e2-a7da-ace92222ae40/ENCFF260LYD.bigWig\ color 137,152,82\ longLabel HepG2 SUZ12 ENCSR771GTF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR771GTF Signal\ track wgEncodeReg4TfChip_ENCFF260LYD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF553GQP ENCSR607YIY Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 4165 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/1d23a5ca-0f6c-48e0-8900-6715689eb363/ENCFF553GQP.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR607YIY Signal\ track wgEncodeReg4Epigenetics_ENCFF553GQP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF095JHA ENCSR771SNW Peak bigBed 5 H1 CBX8 peaks 4 4165 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/1c184d46-4cea-4626-bc05-7f53deef0680/ENCFF095JHA.bigBed\ labelFields none\ longLabel H1 CBX8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR771SNW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF095JHA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF348CTO ENCSR608AHQ Peak bigBed 5 Stomach tissue male embryo 127 days DNase peak 4 4166 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/fbd07569-37ff-4fac-b526-7d5871ebd72c/ENCFF348CTO.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue male embryo 127 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608AHQ Peak\ track wgEncodeReg4Epigenetics_ENCFF348CTO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF284JDC ENCSR771SNW Signal bigWig H1 CBX8 ENCSR771SNW signal 2 4166 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/5630ed11-c486-4565-96fa-fcbb49d6ca7a/ENCFF284JDC.bigWig\ color 118,158,101\ longLabel H1 CBX8 ENCSR771SNW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR771SNW Signal\ track wgEncodeReg4TfChip_ENCFF284JDC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF219RIL ENCSR608AHQ Signal bigWig Stomach tissue male embryo 127 days DNase signal 2 4167 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/6b0b7508-630b-4033-b135-a1b877dd9d93/ENCFF219RIL.bigWig\ color 6,218,147\ longLabel Stomach tissue male embryo 127 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608AHQ Signal\ track wgEncodeReg4Epigenetics_ENCFF219RIL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF892SPR ENCSR772EEN Peak bigBed 5 K562 stably expressing RELA RELA peaks 4 4167 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/1e4df7f5-77d9-4ddb-9cd6-7c68b30d6d7a/ENCFF892SPR.bigBed\ labelFields none\ longLabel K562 stably expressing RELA RELA peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR772EEN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF892SPR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF717RDK ENCSR608KJD Peak bigBed 5 HG03097 ATAC peak 4 4168 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/f2ee7cdb-2da2-42bf-8b5d-34290b261615/ENCFF717RDK.bigBed\ color 2,199,185\ longLabel HG03097 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608KJD Peak\ track wgEncodeReg4Epigenetics_ENCFF717RDK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF225FHQ ENCSR772EEN Signal bigWig K562 stably expressing RELA RELA ENCSR772EEN signal 2 4168 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/2dec5366-0319-41b2-bae1-f2cd2a528870/ENCFF225FHQ.bigWig\ color 254,75,173\ longLabel K562 stably expressing RELA RELA ENCSR772EEN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR772EEN Signal\ track wgEncodeReg4TfChip_ENCFF225FHQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF463QQZ ENCSR608KJD Signal bigWig HG03097 ATAC signal 2 4169 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/325a86c7-bdd6-46c5-81f8-9b59be821b9e/ENCFF463QQZ.bigWig\ color 2,199,185\ longLabel HG03097 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608KJD Signal\ track wgEncodeReg4Epigenetics_ENCFF463QQZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF683HYK ENCSR773JBP Peak bigBed 5 Esophagus squamous epithelium tissue female adult (53 years) CTCF peaks 4 4169 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/21de6247-fd57-47cb-9b8e-eaae84b85d38/ENCFF683HYK.bigBed\ labelFields none\ longLabel Esophagus squamous epithelium tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608NWP Peak\ track wgEncodeReg4Epigenetics_ENCFF296QEK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF799HMN ENCSR773JBP Signal bigWig Esophagus squamous epithelium tissue female adult (53 years) CTCF ENCSR773JBP signal 2 4170 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/96cbe371-e260-41d2-8d64-0ef1ad654f5a/ENCFF799HMN.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (53 years) CTCF ENCSR773JBP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR773JBP Signal\ track wgEncodeReg4TfChip_ENCFF799HMN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF466DQD ENCSR608NWP Signal bigWig Right lobe of liver tissue female child 16 years DNase signal 2 4171 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/666434b9-ba1e-47ff-93dc-13c8d40fc9d1/ENCFF466DQD.bigWig\ color 6,218,147\ longLabel Right lobe of liver tissue female child 16 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608NWP Signal\ track wgEncodeReg4Epigenetics_ENCFF466DQD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF420MRZ ENCSR773REP Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB7A ZBTB7A peaks 4 4171 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/22756bd7-7272-4097-8b59-1a5b7d4dbdc7/ENCFF420MRZ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB7A ZBTB7A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608VNA Peak\ track wgEncodeReg4Epigenetics_ENCFF025WUI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF987OZW ENCSR773REP Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB7A ZBTB7A ENCSR773REP signal 2 4172 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/4f9c8aba-35da-4aee-9a4b-98e1bc02f373/ENCFF987OZW.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB7A ZBTB7A ENCSR773REP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR773REP Signal\ track wgEncodeReg4TfChip_ENCFF987OZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF596SGE ENCSR608VNA Signal bigWig Neural cell originated from H1 H3K4me3 signal 2 4173 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/b99dc0fd-9946-4623-a95d-b96b4c3e4909/ENCFF596SGE.bigWig\ color 255,0,0\ longLabel Neural cell originated from H1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608VNA Signal\ track wgEncodeReg4Epigenetics_ENCFF596SGE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF315CUI ENCSR774PGN Peak bigBed 5 Pancreas tissue female adult (41 years) CTCF peaks 4 4173 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/fdd633ef-bd27-4af3-9187-f603881424cc/ENCFF315CUI.bigBed\ labelFields none\ longLabel Pancreas tissue female adult (41 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR774PGN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF315CUI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF653EYS ENCSR608WPS Peak bigBed 5 Transverse colon tissue male adult 37 years CTCF peak 4 4174 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/11091d5e-be10-4ce1-87a6-4d19e2057cfd/ENCFF653EYS.bigBed\ color 0,176,240\ labelFields none\ longLabel Transverse colon tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608WPS Peak\ track wgEncodeReg4Epigenetics_ENCFF653EYS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF890FKH ENCSR774PGN Signal bigWig Pancreas tissue female adult (41 years) CTCF ENCSR774PGN signal 2 4174 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/a5aaeccf-afc0-4792-9fbc-6deb2e1ec65b/ENCFF890FKH.bigWig\ color 175,100,41\ longLabel Pancreas tissue female adult (41 years) CTCF ENCSR774PGN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR774PGN Signal\ track wgEncodeReg4TfChip_ENCFF890FKH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF646EZE ENCSR608WPS Signal bigWig Transverse colon tissue male adult 37 years CTCF signal 2 4175 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9113ad32-4280-489d-a9d8-0fbedc48e9f4/ENCFF646EZE.bigWig\ color 0,176,240\ longLabel Transverse colon tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608WPS Signal\ track wgEncodeReg4Epigenetics_ENCFF646EZE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF879KXH ENCSR775EQV Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF583 ZNF583 peaks 4 4175 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/2784e9fb-1534-44a3-b965-ae38adcae6fb/ENCFF879KXH.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF583 ZNF583 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR775EQV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF879KXH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF786KTR ENCSR608XIG Peak bigBed 5 Temporal lobe tissue female adult 75 years H3K27ac peak 4 4176 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/25d26f65-1bb4-4193-a19a-c036cb6d2e35/ENCFF786KTR.bigBed\ color 181,145,0\ longLabel Temporal lobe tissue female adult 75 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608XIG Peak\ track wgEncodeReg4Epigenetics_ENCFF786KTR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF430VFG ENCSR775EQV Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF583 ZNF583 ENCSR775EQV signal 2 4176 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/23911ea5-63c7-411e-ba65-e082f0b3c86b/ENCFF430VFG.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF583 ZNF583 ENCSR775EQV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR775EQV Signal\ track wgEncodeReg4TfChip_ENCFF430VFG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF558QCP ENCSR608XIG Signal bigWig Temporal lobe tissue female adult 75 years H3K27ac signal 2 4177 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d3ba2be7-30d6-4978-89c7-226d969734a6/ENCFF558QCP.bigWig\ color 181,145,0\ longLabel Temporal lobe tissue female adult 75 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR608XIG Signal\ track wgEncodeReg4Epigenetics_ENCFF558QCP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF232OEV ENCSR775HFF Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF791 ZNF791 peaks 4 4177 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/b6049dd7-a40f-4c95-acda-1f2e3c6ee9ed/ENCFF232OEV.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF791 ZNF791 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR609DDQ Peak\ track wgEncodeReg4Epigenetics_ENCFF195HRP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF826EHF ENCSR775HFF Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF791 ZNF791 ENCSR775HFF signal 2 4178 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/b1629265-9441-4c0d-b45f-ca8de1551a2e/ENCFF826EHF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF791 ZNF791 ENCSR775HFF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR775HFF Signal\ track wgEncodeReg4TfChip_ENCFF826EHF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF326EII ENCSR609DDQ Signal bigWig CD8-positive, alpha-beta T cell female adult 34 years DNase signal 2 4179 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/70715b26-3da3-480f-b11e-e3d64d439c8b/ENCFF326EII.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta T cell female adult 34 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR609DDQ Signal\ track wgEncodeReg4Epigenetics_ENCFF326EII\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF717TTW ENCSR775YXE Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37 ZBTB37 peaks 4 4179 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/f5937d3c-60a1-4bcf-ad8c-56ff0bb930f8/ENCFF717TTW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37 ZBTB37 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR775YXE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF717TTW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF231JVK ENCSR609GST Peak bigBed 5 Esophagus muscularis mucosa tissue male adult 54 years ATAC peak 4 4180 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/9fd89221-3dcf-4e11-af17-091cca5694da/ENCFF231JVK.bigBed\ color 2,199,185\ longLabel Esophagus muscularis mucosa tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR609GST Peak\ track wgEncodeReg4Epigenetics_ENCFF231JVK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF355RLV ENCSR775YXE Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37 ZBTB37 ENCSR775YXE signal 2 4180 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/afa81a0d-c678-457b-8c14-431606402656/ENCFF355RLV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37 ZBTB37 ENCSR775YXE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR775YXE Signal\ track wgEncodeReg4TfChip_ENCFF355RLV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF454MKS ENCSR609GST Signal bigWig Esophagus muscularis mucosa tissue male adult 54 years ATAC signal 2 4181 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/6c77f39d-e866-4cb4-a0a5-0cfd9868cf23/ENCFF454MKS.bigWig\ color 2,199,185\ longLabel Esophagus muscularis mucosa tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR609GST Signal\ track wgEncodeReg4Epigenetics_ENCFF454MKS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF255RZG ENCSR776CYN Peak bigBed 5 K562 ZFP36 peaks 4 4181 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a4a2b9db-fede-4745-86a5-510b3e80bec3/ENCFF255RZG.bigBed\ labelFields none\ longLabel K562 ZFP36 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR776CYN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF255RZG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF478ZUB ENCSR610AQP Peak bigBed 5 Memory B cell male adult 40 years ATAC peak 4 4182 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/0a97b44a-d3d6-4f62-8e97-f069ad7334bf/ENCFF478ZUB.bigBed\ color 2,199,185\ longLabel Memory B cell male adult 40 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR610AQP Peak\ track wgEncodeReg4Epigenetics_ENCFF478ZUB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF514SEB ENCSR776CYN Signal bigWig K562 ZFP36 ENCSR776CYN signal 2 4182 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/b0cfeb5f-f643-4dc7-a5b0-bb81107a9527/ENCFF514SEB.bigWig\ color 254,75,173\ longLabel K562 ZFP36 ENCSR776CYN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR776CYN Signal\ track wgEncodeReg4TfChip_ENCFF514SEB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF509NWL ENCSR610AQP Signal bigWig Memory B cell male adult 40 years ATAC signal 2 4183 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/9394a69d-1235-44e9-ac5b-b2df2ec21b10/ENCFF509NWL.bigWig\ color 2,199,185\ longLabel Memory B cell male adult 40 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR610AQP Signal\ track wgEncodeReg4Epigenetics_ENCFF509NWL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF883PFA ENCSR778NDP Peak bigBed 5 Cognitive impairment; middle frontal area 46 tissue female adult (81 years) CTCF peaks 4 4183 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ee0e8f25-4dc8-4ff2-a0fa-4829bf646426/ENCFF883PFA.bigBed\ labelFields none\ longLabel Cognitive impairment; middle frontal area 46 tissue female adult (81 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR778NDP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF883PFA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF265AZL ENCSR610UDC Peak bigBed 5 Middle frontal area 46 tissue female adult 87 years CTCF peak 4 4184 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6a0f9660-b0ea-4ab9-afc7-3688011e1bbb/ENCFF265AZL.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 87 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR610UDC Peak\ track wgEncodeReg4Epigenetics_ENCFF265AZL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF081IRZ ENCSR778NDP Signal bigWig Cognitive impairment; middle frontal area 46 tissue female adult (81 years) CTCF ENCSR778NDP signal 2 4184 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/cab57141-2208-4d7e-916c-350c13677337/ENCFF081IRZ.bigWig\ color 155,155,18\ longLabel Cognitive impairment; middle frontal area 46 tissue female adult (81 years) CTCF ENCSR778NDP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR778NDP Signal\ track wgEncodeReg4TfChip_ENCFF081IRZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF729DUW ENCSR610UDC Signal bigWig Middle frontal area 46 tissue female adult 87 years CTCF signal 2 4185 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/642e9c28-67b5-40c9-9229-08562b48d47c/ENCFF729DUW.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 87 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR610UDC Signal\ track wgEncodeReg4Epigenetics_ENCFF729DUW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF509MGU ENCSR778QLY Peak bigBed 5 HEK293T ELF4 peaks 4 4185 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/46747b9e-af5c-4c93-ab46-231a0d9140f9/ENCFF509MGU.bigBed\ labelFields none\ longLabel HEK293T ELF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR778QLY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF509MGU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF619MPL ENCSR611BQR Peak bigBed 5 T-helper 17 cell male adult 50 years ATAC peak 4 4186 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/2237a009-73a4-4bdd-b965-9f4cb531c6e8/ENCFF619MPL.bigBed\ color 2,199,185\ longLabel T-helper 17 cell male adult 50 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611BQR Peak\ track wgEncodeReg4Epigenetics_ENCFF619MPL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF956HGR ENCSR778QLY Signal bigWig HEK293T ELF4 ENCSR778QLY signal 2 4186 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8d8c531f-e842-4a56-9fa5-394b69ddb702/ENCFF956HGR.bigWig\ color 92,161,153\ longLabel HEK293T ELF4 ENCSR778QLY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR778QLY Signal\ track wgEncodeReg4TfChip_ENCFF956HGR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF121MUN ENCSR611BQR Signal bigWig T-helper 17 cell male adult 50 years ATAC signal 2 4187 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/885d7356-1826-48e4-bb5f-b2b82d22404b/ENCFF121MUN.bigWig\ color 2,199,185\ longLabel T-helper 17 cell male adult 50 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611BQR Signal\ track wgEncodeReg4Epigenetics_ENCFF121MUN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF006WWZ ENCSR778UBR Peak bigBed 5 GM12878 ARID3A peaks 4 4187 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/22ad5755-0700-475e-85b8-3d66ae6adbf4/ENCFF006WWZ.bigBed\ labelFields none\ longLabel GM12878 ARID3A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611DJQ Peak\ track wgEncodeReg4Epigenetics_ENCFF003BPG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF830CXC ENCSR778UBR Signal bigWig GM12878 ARID3A ENCSR778UBR signal 2 4188 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/951b1de2-4f88-4e70-bc43-fe91eb1a42fc/ENCFF830CXC.bigWig\ color 254,75,173\ longLabel GM12878 ARID3A ENCSR778UBR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR778UBR Signal\ track wgEncodeReg4TfChip_ENCFF830CXC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF229BGF ENCSR611DJQ Signal bigWig Testis tissue male adult 37 years H3K4me3 signal 2 4189 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c1660d9d-c210-43f9-9e45-dac2b83c32a8/ENCFF229BGF.bigWig\ color 255,0,0\ longLabel Testis tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611DJQ Signal\ track wgEncodeReg4Epigenetics_ENCFF229BGF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF888ERQ ENCSR778ZPK Peak bigBed 5 Heart left ventricle tissue female adult (59 years) CTCF peaks 4 4189 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2fd67f05-f394-4158-aa8b-c7611b432e27/ENCFF888ERQ.bigBed\ labelFields none\ longLabel Heart left ventricle tissue female adult (59 years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611HGB Peak\ track wgEncodeReg4Epigenetics_ENCFF832KWE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF541CSJ ENCSR778ZPK Signal bigWig Heart left ventricle tissue female adult (59 years) CTCF ENCSR778ZPK signal 2 4190 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/74b2d91e-1e9c-46d1-ab40-cb9f14414551/ENCFF541CSJ.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue female adult (59 years) CTCF ENCSR778ZPK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR778ZPK Signal\ track wgEncodeReg4TfChip_ENCFF541CSJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF553NAP ENCSR611HGB Signal bigWig GM23338 CTCF signal 2 4191 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/00ca6889-ce96-45c4-bd68-2f459089dfd1/ENCFF553NAP.bigWig\ color 0,176,240\ longLabel GM23338 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611HGB Signal\ track wgEncodeReg4Epigenetics_ENCFF553NAP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF403LNW ENCSR779YTI Peak bigBed 5 Middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 4191 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/74326197-23f5-49a0-888c-b8f9c80efa41/ENCFF403LNW.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611JJS Peak\ track wgEncodeReg4Epigenetics_ENCFF123WOM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF488PRF ENCSR779YTI Signal bigWig Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR779YTI signal 2 4192 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ccb3ddf6-3a39-4e14-8b27-2a97d6eb18ba/ENCFF488PRF.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR779YTI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR779YTI Signal\ track wgEncodeReg4TfChip_ENCFF488PRF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF070LLG ENCSR611JJS Signal bigWig A673 CTCF signal 2 4193 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/95db783a-512d-4a21-95b4-28d4a824b466/ENCFF070LLG.bigWig\ color 0,176,240\ longLabel A673 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR611JJS Signal\ track wgEncodeReg4Epigenetics_ENCFF070LLG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF845XAO ENCSR780BBJ Peak bigBed 5 K562 ZZZ3 peaks 4 4193 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/9ded0152-90d7-4fe1-852f-24a111dc07a2/ENCFF845XAO.bigBed\ labelFields none\ longLabel K562 ZZZ3 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612BWE Peak\ track wgEncodeReg4Epigenetics_ENCFF031GUG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF481FFX ENCSR780BBJ Signal bigWig K562 ZZZ3 ENCSR780BBJ signal 2 4194 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/17548814-7f52-4322-aa2e-aef47f3135c2/ENCFF481FFX.bigWig\ color 254,75,173\ longLabel K562 ZZZ3 ENCSR780BBJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR780BBJ Signal\ track wgEncodeReg4TfChip_ENCFF481FFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF641QSU ENCSR612BWE Signal bigWig Pancreas tissue male adult 34 years H3K27ac signal 2 4195 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/22263a43-d1fa-4155-8506-2cbe1c7c5f03/ENCFF641QSU.bigWig\ color 181,145,0\ longLabel Pancreas tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612BWE Signal\ track wgEncodeReg4Epigenetics_ENCFF641QSU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF434UDC ENCSR780OXL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 peaks 4 4195 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/a30300ea-1d45-4037-9f7e-668a29ab3d12/ENCFF434UDC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612CTW Peak\ track wgEncodeReg4Epigenetics_ENCFF476TXD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF693THW ENCSR780OXL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 ENCSR780OXL signal 2 4196 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/929d317a-26dc-4717-baa1-78bf7306f838/ENCFF693THW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 GMEB1 ENCSR780OXL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR780OXL Signal\ track wgEncodeReg4TfChip_ENCFF693THW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF528JMP ENCSR612CTW Signal bigWig Mucosa of descending colon tissue male adult 40 years DNase signal 2 4197 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/d9112b67-7e3a-4394-990b-eccde321a30c/ENCFF528JMP.bigWig\ color 6,218,147\ longLabel Mucosa of descending colon tissue male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612CTW Signal\ track wgEncodeReg4Epigenetics_ENCFF528JMP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF173CEN ENCSR780OZE Peak bigBed 5 Parathyroid adenoma tissue male adult (62 years) CTCF peaks 4 4197 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e097fd70-ce9f-48da-8739-fce93f69b6e0/ENCFF173CEN.bigBed\ labelFields none\ longLabel Parathyroid adenoma tissue male adult (62 years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612GKP Peak\ track wgEncodeReg4Epigenetics_ENCFF421STN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF105LYV ENCSR780OZE Signal bigWig Parathyroid adenoma tissue male adult (62 years) CTCF ENCSR780OZE signal 2 4198 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/046dc9ba-ceaa-400e-874d-5b5f25bc1262/ENCFF105LYV.bigWig\ color 0,176,240\ longLabel Parathyroid adenoma tissue male adult (62 years) CTCF ENCSR780OZE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR780OZE Signal\ track wgEncodeReg4TfChip_ENCFF105LYV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF077FBW ENCSR612GKP Signal bigWig Spleen tissue female adult 41 years H3K4me3 signal 2 4199 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/64c5dde9-96a3-44bb-972c-c9b51809cf8f/ENCFF077FBW.bigWig\ color 255,0,0\ longLabel Spleen tissue female adult 41 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612GKP Signal\ track wgEncodeReg4Epigenetics_ENCFF077FBW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF809BPK ENCSR781EQJ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB48 ZBTB48 peaks 4 4199 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ab637494-9a43-4c47-a814-a6e869960c5c/ENCFF809BPK.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB48 ZBTB48 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR781EQJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF809BPK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF079KZO ENCSR612IKQ Peak bigBed 5 Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue female adult 87 years DNase peak 4 4200 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/f18f0927-1ab7-4802-b4bc-ce2b76948e36/ENCFF079KZO.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue female adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612IKQ Peak\ track wgEncodeReg4Epigenetics_ENCFF079KZO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF484RVX ENCSR781EQJ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB48 ZBTB48 ENCSR781EQJ signal 2 4200 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/2f85f773-5924-40d6-8738-f53adc86fc67/ENCFF484RVX.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB48 ZBTB48 ENCSR781EQJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR781EQJ Signal\ track wgEncodeReg4TfChip_ENCFF484RVX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF262FOI ENCSR612IKQ Signal bigWig Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue female adult 87 years DNase signal 2 4201 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/5fb4ec8d-8b08-4c17-a2f6-34879c6c7168/ENCFF262FOI.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease posterior cingulate gyrus tissue female adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR612IKQ Signal\ track wgEncodeReg4Epigenetics_ENCFF262FOI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF139VAJ ENCSR782WRO Peak bigBed 5 K562 BMI1 peaks 4 4201 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/bc852c50-5618-4b0f-ae38-21b1ac26a750/ENCFF139VAJ.bigBed\ labelFields none\ longLabel K562 BMI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR782WRO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF139VAJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF552OEZ ENCSR614JAG Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years ATAC peak 4 4202 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/78a94ca0-807d-4a6c-8e09-5ab2953e8f0c/ENCFF552OEZ.bigBed\ color 2,199,185\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR614JAG Peak\ track wgEncodeReg4Epigenetics_ENCFF552OEZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF138XSR ENCSR782WRO Signal bigWig K562 BMI1 ENCSR782WRO signal 2 4202 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/71f90086-e73d-4499-948d-55d7c3ae78f4/ENCFF138XSR.bigWig\ color 254,75,173\ longLabel K562 BMI1 ENCSR782WRO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR782WRO Signal\ track wgEncodeReg4TfChip_ENCFF138XSR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF483NBG ENCSR614JAG Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years ATAC signal 2 4203 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/002d5969-0664-4187-b97f-79801808aafe/ENCFF483NBG.bigWig\ color 2,199,185\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR614JAG Signal\ track wgEncodeReg4Epigenetics_ENCFF483NBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF544VTV ENCSR783EPA Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBPL1 TBPL1 peaks 4 4203 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/e762c9bc-90af-4077-8733-dd112bbf8160/ENCFF544VTV.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBPL1 TBPL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR783EPA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF544VTV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF634FLE ENCSR614NSH Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak 4 4204 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/3f9322a8-126e-41d1-a6bc-521aa61da4fe/ENCFF634FLE.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR614NSH Peak\ track wgEncodeReg4Epigenetics_ENCFF634FLE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF911WKX ENCSR783EPA Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBPL1 TBPL1 ENCSR783EPA signal 2 4204 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/ca7e01f9-1852-465c-a5de-f64056d9954b/ENCFF911WKX.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TBPL1 TBPL1 ENCSR783EPA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR783EPA Signal\ track wgEncodeReg4TfChip_ENCFF911WKX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF676INB ENCSR614NSH Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal 2 4205 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/a2ca8d99-1ff0-439e-9675-3320094478f5/ENCFF676INB.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR614NSH Signal\ track wgEncodeReg4Epigenetics_ENCFF676INB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF575FXK ENCSR784BVD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYC MYC peaks 4 4205 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/704e7cd5-70ea-44eb-852e-4136c09310ff/ENCFF575FXK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYC MYC peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR617SVO Peak\ track wgEncodeReg4Epigenetics_ENCFF235UVY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF217HMR ENCSR787CHF Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF1 USF1 ENCSR787CHF signal 2 4220 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/07/1231eb85-e8a3-4a75-834c-6d22e9e7493f/ENCFF217HMR.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF1 USF1 ENCSR787CHF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR787CHF Signal\ track wgEncodeReg4TfChip_ENCFF217HMR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF068GXP ENCSR617SVO Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 4221 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/d9945f58-6a2f-4ccc-bc9c-60943106ed58/ENCFF068GXP.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR617SVO Signal\ track wgEncodeReg4Epigenetics_ENCFF068GXP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF348SOM ENCSR788DXU Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 peaks 4 4221 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/782b5e42-21ec-4736-8807-c6fa9a7ea2c3/ENCFF348SOM.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 FOXA3 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR619POC Peak\ track wgEncodeReg4Epigenetics_ENCFF006FSY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF281TJW ENCSR791OZM Signal bigWig K562 RBM25 ENCSR791OZM signal 2 4234 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3d6c605c-9e80-4ed9-859c-93807432fc16/ENCFF281TJW.bigWig\ color 254,75,173\ longLabel K562 RBM25 ENCSR791OZM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR791OZM Signal\ track wgEncodeReg4TfChip_ENCFF281TJW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF451OTN ENCSR619POC Signal bigWig Chorionic villus tissue male embryo 38 weeks H3K27ac signal 2 4235 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/d215cd46-efb1-4fdd-acc6-00102568c226/ENCFF451OTN.bigWig\ color 181,145,0\ longLabel Chorionic villus tissue male embryo 38 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR619POC Signal\ track wgEncodeReg4Epigenetics_ENCFF451OTN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF506XRP ENCSR792MZV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYRF MYRF peaks 4 4235 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3ed0cae3-9301-4163-8b42-92c83769be29/ENCFF506XRP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYRF MYRF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR620AZM Peak\ track wgEncodeReg4Epigenetics_ENCFF501USZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF063QGL ENCSR792MZV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYRF MYRF ENCSR792MZV signal 2 4236 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/622afadc-54bb-41e5-8d9f-5638689120ab/ENCFF063QGL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MYRF MYRF ENCSR792MZV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR792MZV Signal\ track wgEncodeReg4TfChip_ENCFF063QGL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF064JOI ENCSR620AZM Signal bigWig Common myeloid progenitor, CD34-positive female adult 33 years H3K27ac signal 2 4237 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/1d06d080-4a61-4e11-b135-770e4635e599/ENCFF064JOI.bigWig\ color 181,145,0\ longLabel Common myeloid progenitor, CD34-positive female adult 33 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR620AZM Signal\ track wgEncodeReg4Epigenetics_ENCFF064JOI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF150UPI ENCSR793EHQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF4G HNF4G peaks 4 4237 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/dd6c2944-aa26-44b8-97ce-28b9d09858ad/ENCFF150UPI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HNF4G HNF4G peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR798KXG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF242ZCY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF556YQA ENCSR624ODL Signal bigWig Left lobe of liver tissue female adult 61 years ATAC signal 2 4259 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/d0221e01-411d-4735-a8f2-1dcd5d616d84/ENCFF556YQA.bigWig\ color 2,199,185\ longLabel Left lobe of liver tissue female adult 61 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR624ODL Signal\ track wgEncodeReg4Epigenetics_ENCFF556YQA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF898KEI ENCSR798KXG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBP TBP ENCSR798KXG signal 2 4259 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2bf7d177-908b-46c0-9e37-90f27f4adbeb/ENCFF898KEI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TBP TBP ENCSR798KXG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR798KXG Signal\ track wgEncodeReg4TfChip_ENCFF898KEI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF341LTC ENCSR625WLB Peak bigBed 5 CD8-positive, alpha-beta memory T cell male adult 30 years DNase peak 4 4260 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/269c40ad-f38c-4e28-a075-5ced517644e9/ENCFF341LTC.bigBed\ color 6,218,147\ labelFields none\ longLabel CD8-positive, alpha-beta memory T cell male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR625WLB Peak\ track wgEncodeReg4Epigenetics_ENCFF341LTC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF386VZB ENCSR798MFW Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2 NR1H2 peaks 4 4260 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/a7e1dc41-3f7f-4dc1-8987-02095d162366/ENCFF386VZB.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2 NR1H2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR798MFW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF386VZB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF245YIL ENCSR625WLB Signal bigWig CD8-positive, alpha-beta memory T cell male adult 30 years DNase signal 2 4261 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/689f3243-f642-4495-b05b-0f86399681a8/ENCFF245YIL.bigWig\ color 6,218,147\ longLabel CD8-positive, alpha-beta memory T cell male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR625WLB Signal\ track wgEncodeReg4Epigenetics_ENCFF245YIL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF134MED ENCSR798MFW Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2 NR1H2 ENCSR798MFW signal 2 4261 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/ac31c090-896b-496c-8cc3-152ad3c2652f/ENCFF134MED.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2 NR1H2 ENCSR798MFW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR798MFW Signal\ track wgEncodeReg4TfChip_ENCFF134MED\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF142GIM ENCSR626RVD Peak bigBed 5 Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days DNase peak 4 4262 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/540fe94d-9d7b-40e8-9156-2d7d8402bc5c/ENCFF142GIM.bigBed\ color 6,218,147\ labelFields none\ longLabel Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR626RVD Peak\ track wgEncodeReg4Epigenetics_ENCFF142GIM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF631BWF ENCSR798NVH Peak bigBed 5 Uterus tissue female adult (51 years) CTCF peaks 4 4262 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/59335270-5512-4075-b8d1-71e49d41070a/ENCFF631BWF.bigBed\ labelFields none\ longLabel Uterus tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR798NVH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF631BWF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF386FNE ENCSR626RVD Signal bigWig Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days DNase signal 2 4263 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/11803138-2cec-4be0-a251-9ddda6766add/ENCFF386FNE.bigWig\ color 6,218,147\ longLabel Bipolar neuron originated from GM23338 treated with 0.5 μg/mL doxycycline hyclate for 4 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR626RVD Signal\ track wgEncodeReg4Epigenetics_ENCFF386FNE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF245FMZ ENCSR798NVH Signal bigWig Uterus tissue female adult (51 years) CTCF ENCSR798NVH signal 2 4263 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8b083454-ee32-410c-bb65-443c8a36a1f4/ENCFF245FMZ.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (51 years) CTCF ENCSR798NVH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR798NVH Signal\ track wgEncodeReg4TfChip_ENCFF245FMZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF465YRL ENCSR626SDX Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 4264 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/f719f70a-4f2a-4e4d-b8ae-29819762a6f9/ENCFF465YRL.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR626SDX Peak\ track wgEncodeReg4Epigenetics_ENCFF465YRL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF823YYW ENCSR799DUB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF4 IKZF4 peaks 4 4264 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/f98ba383-b2f9-4b49-bcec-9d55e8e21cac/ENCFF823YYW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF4 IKZF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799DUB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF823YYW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF212IKP ENCSR626SDX Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal 2 4265 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/4588699c-b876-4bf3-af72-93b7193e7717/ENCFF212IKP.bigWig\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR626SDX Signal\ track wgEncodeReg4Epigenetics_ENCFF212IKP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF482RVX ENCSR799DUB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF4 IKZF4 ENCSR799DUB signal 2 4265 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/2c0d59d2-e2c1-49d6-9742-0242ad87d146/ENCFF482RVX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF4 IKZF4 ENCSR799DUB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799DUB Signal\ track wgEncodeReg4TfChip_ENCFF482RVX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF742LSG ENCSR626ZPK Peak bigBed 5 Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 4266 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/e811e8c1-da2a-4023-9273-fe982fc96884/ENCFF742LSG.bigBed\ color 181,145,0\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR626ZPK Peak\ track wgEncodeReg4Epigenetics_ENCFF742LSG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF455DMI ENCSR799GJD Peak bigBed 5 Nephron progenitor cell: 8 days post differentiation CTCF peaks 4 4266 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7b903476-eda0-4a81-b720-7e27b7309490/ENCFF455DMI.bigBed\ labelFields none\ longLabel Nephron progenitor cell: 8 days post differentiation CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799GJD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF455DMI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF525DJA ENCSR626ZPK Signal bigWig Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 4267 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/d1a1ef90-f8ac-4112-8ad2-0584bc681f12/ENCFF525DJA.bigWig\ color 181,145,0\ longLabel Activated naive CD8-positive, alpha-beta T cell male adult 30 years treated with anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR626ZPK Signal\ track wgEncodeReg4Epigenetics_ENCFF525DJA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF041NZX ENCSR799GJD Signal bigWig Nephron progenitor cell: 8 days post differentiation CTCF ENCSR799GJD signal 2 4267 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/98edd70b-0678-4779-ad60-c48b47931b91/ENCFF041NZX.bigWig\ color 92,161,153\ longLabel Nephron progenitor cell: 8 days post differentiation CTCF ENCSR799GJD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799GJD Signal\ track wgEncodeReg4TfChip_ENCFF041NZX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF268SBN ENCSR627KFV Peak bigBed 5 Stomach tissue female embryo 147 days DNase peak 4 4268 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/7bd16b9b-7a86-455e-8a9b-69674abab525/ENCFF268SBN.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo 147 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627KFV Peak\ track wgEncodeReg4Epigenetics_ENCFF268SBN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF027HFW ENCSR799GOY Peak bigBed 5 HepG2 YBX1 peaks 4 4268 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/cca76a47-26f0-4456-b59b-5ae357fc6d08/ENCFF027HFW.bigBed\ labelFields none\ longLabel HepG2 YBX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799GOY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF027HFW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962GBD ENCSR627KFV Signal bigWig Stomach tissue female embryo 147 days DNase signal 2 4269 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/7eeae0ab-0e5b-437b-96a6-fd36eeffb467/ENCFF962GBD.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 147 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627KFV Signal\ track wgEncodeReg4Epigenetics_ENCFF962GBD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF696PKK ENCSR799GOY Signal bigWig HepG2 YBX1 ENCSR799GOY signal 2 4269 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/eb97ec2d-f9f5-43d6-93cd-ac416665bf09/ENCFF696PKK.bigWig\ color 137,152,82\ longLabel HepG2 YBX1 ENCSR799GOY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799GOY Signal\ track wgEncodeReg4TfChip_ENCFF696PKK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF742GGE ENCSR627NIF Peak bigBed 5 Lung tissue male embryo 54 days and male embryo 58 days DNase peak 4 4270 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/224d4806-6263-4ed5-9dce-862296fcc415/ENCFF742GGE.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue male embryo 54 days and male embryo 58 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627NIF Peak\ track wgEncodeReg4Epigenetics_ENCFF742GGE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF101TOL ENCSR799TJD Peak bigBed 5 Upper lobe of left lung tissue female adult (51 years) CTCF peaks 4 4270 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2018/06/19/44c167a5-bbcc-4f6c-b34b-fd3c9b2834c3/ENCFF101TOL.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799TJD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF101TOL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF403IJQ ENCSR627NIF Signal bigWig Lung tissue male embryo 54 days and male embryo 58 days DNase signal 2 4271 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/740764c8-e0cf-48a8-9345-c684697f1183/ENCFF403IJQ.bigWig\ color 6,218,147\ longLabel Lung tissue male embryo 54 days and male embryo 58 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627NIF Signal\ track wgEncodeReg4Epigenetics_ENCFF403IJQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF468WUY ENCSR799TJD Signal bigWig Upper lobe of left lung tissue female adult (51 years) CTCF ENCSR799TJD signal 2 4271 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/44e6c71a-fa40-40e4-9427-b9eb132cc1a3/ENCFF468WUY.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (51 years) CTCF ENCSR799TJD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799TJD Signal\ track wgEncodeReg4TfChip_ENCFF468WUY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF925UYF ENCSR627QIA Peak bigBed 5 T-cell male adult 28 years DNase peak 4 4272 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/b02ca109-02a6-4f06-92e8-1e634e7f939a/ENCFF925UYF.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 28 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627QIA Peak\ track wgEncodeReg4Epigenetics_ENCFF925UYF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF828IDE ENCSR799WDT Peak bigBed 5 Peyer's patch tissue male adult (54 years) CTCF peaks 4 4272 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/3ffbbc0b-87b3-4ab5-9942-bdec290bf13f/ENCFF828IDE.bigBed\ labelFields none\ longLabel Peyer's patch tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799WDT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF828IDE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF344QUF ENCSR627QIA Signal bigWig T-cell male adult 28 years DNase signal 2 4273 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/17bcb442-1215-49db-8a46-8960b44db9cc/ENCFF344QUF.bigWig\ color 6,218,147\ longLabel T-cell male adult 28 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627QIA Signal\ track wgEncodeReg4Epigenetics_ENCFF344QUF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF694HBV ENCSR799WDT Signal bigWig Peyer's patch tissue male adult (54 years) CTCF ENCSR799WDT signal 2 4273 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/a7d7d402-3dc1-4231-b3ac-98914b07e7e7/ENCFF694HBV.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue male adult (54 years) CTCF ENCSR799WDT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR799WDT Signal\ track wgEncodeReg4TfChip_ENCFF694HBV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF971XAE ENCSR627UDJ Peak bigBed 5 T-cell male adult 36 years DNase peak 4 4274 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ec718942-fd2d-4063-9e2b-ad9af51998bf/ENCFF971XAE.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 36 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627UDJ Peak\ track wgEncodeReg4Epigenetics_ENCFF971XAE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF434CIY ENCSR800ASH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234 ZNF234 peaks 4 4274 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/638c28b7-8864-4760-96d1-ed30d4675d86/ENCFF434CIY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234 ZNF234 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR800ASH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF434CIY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF719ZZK ENCSR627UDJ Signal bigWig T-cell male adult 36 years DNase signal 2 4275 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/303c718d-8abb-4cc8-909e-3776f8195af3/ENCFF719ZZK.bigWig\ color 6,218,147\ longLabel T-cell male adult 36 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR627UDJ Signal\ track wgEncodeReg4Epigenetics_ENCFF719ZZK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF202GMP ENCSR800ASH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234 ZNF234 ENCSR800ASH signal 2 4275 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/8a6a13ca-b61a-4178-ba67-77bb4d347be8/ENCFF202GMP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234 ZNF234 ENCSR800ASH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR800ASH Signal\ track wgEncodeReg4TfChip_ENCFF202GMP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF205SWG ENCSR628GQE Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase peak 4 4276 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/e4e7dd37-2d75-4723-9a37-37e8acfec6e5/ENCFF205SWG.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628GQE Peak\ track wgEncodeReg4Epigenetics_ENCFF205SWG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF250NXO ENCSR800JRG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 peaks 4 4276 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/576c1c2d-8b40-4b70-935a-f467a3f52963/ENCFF250NXO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR800JRG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF250NXO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF346EOF ENCSR628GQE Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase signal 2 4277 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/e208fe58-d432-4e60-8e15-404d376396a9/ENCFF346EOF.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628GQE Signal\ track wgEncodeReg4Epigenetics_ENCFF346EOF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF048LUW ENCSR800JRG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 ENCSR800JRG signal 2 4277 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/2165ee73-951e-4e0c-8696-7e872cd492f3/ENCFF048LUW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 ENCSR800JRG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR800JRG Signal\ track wgEncodeReg4TfChip_ENCFF048LUW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF625ACP ENCSR628IRM Peak bigBed 5 T-cell male adult 21 years DNase peak 4 4278 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/30313058-f666-4d67-8abd-7644edb737b6/ENCFF625ACP.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 21 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628IRM Peak\ track wgEncodeReg4Epigenetics_ENCFF625ACP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF352VYI ENCSR800QIT Peak bigBed 5 HepG2 HNF1A peaks 4 4278 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/1b49188e-ed83-47f4-97f7-66979428e43f/ENCFF352VYI.bigBed\ labelFields none\ longLabel HepG2 HNF1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR800QIT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF352VYI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF461UYC ENCSR628IRM Signal bigWig T-cell male adult 21 years DNase signal 2 4279 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/27b0a387-0b5c-4189-a54e-987fe54f5f1c/ENCFF461UYC.bigWig\ color 6,218,147\ longLabel T-cell male adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628IRM Signal\ track wgEncodeReg4Epigenetics_ENCFF461UYC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF898UYA ENCSR800QIT Signal bigWig HepG2 HNF1A ENCSR800QIT signal 2 4279 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/62873595-d8f4-42a4-87fa-078716076423/ENCFF898UYA.bigWig\ color 137,152,82\ longLabel HepG2 HNF1A ENCSR800QIT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR800QIT Signal\ track wgEncodeReg4TfChip_ENCFF898UYA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF225WME ENCSR628NEA Peak bigBed 5 Right lobe of liver tissue male adult 45 years DNase peak 4 4280 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/52aadbf7-03f2-47b4-a206-e429b278500f/ENCFF225WME.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lobe of liver tissue male adult 45 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628NEA Peak\ track wgEncodeReg4Epigenetics_ENCFF225WME\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF838BNI ENCSR801GJU Peak bigBed 5 HepG2 CBX2 peaks 4 4280 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/9c6e1d9f-654e-4ba2-990e-f4958c59869e/ENCFF838BNI.bigBed\ labelFields none\ longLabel HepG2 CBX2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801GJU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF838BNI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF606YDZ ENCSR628NEA Signal bigWig Right lobe of liver tissue male adult 45 years DNase signal 2 4281 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b19062ae-6112-4186-8ad3-474193d40134/ENCFF606YDZ.bigWig\ color 6,218,147\ longLabel Right lobe of liver tissue male adult 45 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628NEA Signal\ track wgEncodeReg4Epigenetics_ENCFF606YDZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF661UYZ ENCSR801GJU Signal bigWig HepG2 CBX2 ENCSR801GJU signal 2 4281 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/a50ea38d-6b43-45f4-ac69-7d1795eb3ce1/ENCFF661UYZ.bigWig\ color 137,152,82\ longLabel HepG2 CBX2 ENCSR801GJU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801GJU Signal\ track wgEncodeReg4TfChip_ENCFF661UYZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF253VXS ENCSR628PLS Peak bigBed 5 GM18861 ATAC peak 4 4282 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/09c70535-34e4-479b-a791-bec1e766f313/ENCFF253VXS.bigBed\ color 2,199,185\ longLabel GM18861 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628PLS Peak\ track wgEncodeReg4Epigenetics_ENCFF253VXS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF041WRN ENCSR801RPW Peak bigBed 5 K562 stably expressing GTF2A2 GTF2A2 peaks 4 4282 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/e252bf39-00c7-4f08-9b90-8e3f7d5083c6/ENCFF041WRN.bigBed\ labelFields none\ longLabel K562 stably expressing GTF2A2 GTF2A2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801RPW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF041WRN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF169IGM ENCSR628PLS Signal bigWig GM18861 ATAC signal 2 4283 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/614dd8a8-cab1-4d15-9566-a9d6443ad1e1/ENCFF169IGM.bigWig\ color 2,199,185\ longLabel GM18861 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR628PLS Signal\ track wgEncodeReg4Epigenetics_ENCFF169IGM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF362BXA ENCSR801RPW Signal bigWig K562 stably expressing GTF2A2 GTF2A2 ENCSR801RPW signal 2 4283 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/852a3c10-a11c-42ad-89d8-c76193ed2252/ENCFF362BXA.bigWig\ color 254,75,173\ longLabel K562 stably expressing GTF2A2 GTF2A2 ENCSR801RPW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801RPW Signal\ track wgEncodeReg4TfChip_ENCFF362BXA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF978ZWA ENCSR629TMA Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 83 years DNase peak 4 4284 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/97973b3d-60f6-4cb1-85b8-6b01e41881b9/ENCFF978ZWA.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR629TMA Peak\ track wgEncodeReg4Epigenetics_ENCFF978ZWA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF126PJB ENCSR801SNX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512B ZNF512B peaks 4 4284 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/054f4cdc-fdb1-4fbe-9ce5-f3d780129b3b/ENCFF126PJB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512B ZNF512B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801SNX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF126PJB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF610UZY ENCSR629TMA Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 83 years DNase signal 2 4285 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/6c525df8-4f91-4d81-9e5d-93efcb668b23/ENCFF610UZY.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR629TMA Signal\ track wgEncodeReg4Epigenetics_ENCFF610UZY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF040PDQ ENCSR801SNX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512B ZNF512B ENCSR801SNX signal 2 4285 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/a78b7dc7-c144-41a1-babd-a3b5cfd371aa/ENCFF040PDQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512B ZNF512B ENCSR801SNX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801SNX Signal\ track wgEncodeReg4TfChip_ENCFF040PDQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF676HXO ENCSR630DSN Peak bigBed 5 Heart right ventricle tissue male adult 61 years H3K4me3 peak 4 4286 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/5afc8aeb-1da7-484b-8fc1-6a9699ae99ff/ENCFF676HXO.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 61 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630DSN Peak\ track wgEncodeReg4Epigenetics_ENCFF676HXO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF924WTI ENCSR801SWX Peak bigBed 5 MCF-7 TARDBP peaks 4 4286 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/b2463939-b09f-4ec3-8fad-1797a678e9b5/ENCFF924WTI.bigBed\ labelFields none\ longLabel MCF-7 TARDBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801SWX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF924WTI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF330KOM ENCSR630DSN Signal bigWig Heart right ventricle tissue male adult 61 years H3K4me3 signal 2 4287 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/3e85b1e4-02ce-4269-8ead-cc0fe1b2f60c/ENCFF330KOM.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 61 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630DSN Signal\ track wgEncodeReg4Epigenetics_ENCFF330KOM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF844SQA ENCSR801SWX Signal bigWig MCF-7 TARDBP ENCSR801SWX signal 2 4287 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/e1ed749f-16d5-431f-b4a3-b4d7e26fa3aa/ENCFF844SQA.bigWig\ color 65,171,173\ longLabel MCF-7 TARDBP ENCSR801SWX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR801SWX Signal\ track wgEncodeReg4TfChip_ENCFF844SQA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF616WTE ENCSR630OQI Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak 4 4288 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/7776a211-4e63-4d87-b3fa-f319765b028b/ENCFF616WTE.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630OQI Peak\ track wgEncodeReg4Epigenetics_ENCFF616WTE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF501MST ENCSR802AHH Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens BCL6 BCL6 peaks 4 4288 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/a553a4df-54a8-4eac-8874-20a1d5c2b4da/ENCFF501MST.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens BCL6 BCL6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR802AHH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF501MST\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF191RTJ ENCSR630OQI Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal 2 4289 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/f6a2ca4b-b7af-4ccc-837c-431c244bc917/ENCFF191RTJ.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630OQI Signal\ track wgEncodeReg4Epigenetics_ENCFF191RTJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF728SYV ENCSR802AHH Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens BCL6 BCL6 ENCSR802AHH signal 2 4289 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/dd27b81c-152a-4574-a4b3-9972a9bf4055/ENCFF728SYV.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens BCL6 BCL6 ENCSR802AHH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR802AHH Signal\ track wgEncodeReg4TfChip_ENCFF728SYV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF944FFG ENCSR630REB Peak bigBed 5 Tibial artery tissue male adult 54 years ATAC peak 4 4290 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/c4ace1fe-e0ca-416d-bec6-6bdc9355d922/ENCFF944FFG.bigBed\ color 2,199,185\ longLabel Tibial artery tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630REB Peak\ track wgEncodeReg4Epigenetics_ENCFF944FFG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF634EYT ENCSR802UCW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLXIP MLXIP peaks 4 4290 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/e577faa6-f207-41a7-a94b-2572a08745ed/ENCFF634EYT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLXIP MLXIP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR802UCW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF634EYT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF891TZE ENCSR630REB Signal bigWig Tibial artery tissue male adult 54 years ATAC signal 2 4291 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/9f9235c3-6915-4b85-9ca1-68febc31def8/ENCFF891TZE.bigWig\ color 2,199,185\ longLabel Tibial artery tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630REB Signal\ track wgEncodeReg4Epigenetics_ENCFF891TZE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF781XAV ENCSR802UCW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLXIP MLXIP ENCSR802UCW signal 2 4291 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/a686f1c9-ab0a-494a-8e54-d8ad85c4eaa1/ENCFF781XAV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MLXIP MLXIP ENCSR802UCW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR802UCW Signal\ track wgEncodeReg4TfChip_ENCFF781XAV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF942NBZ ENCSR630SSL Signal bigWig Dendritic cell male adult 51 years H3K27ac signal 2 4292 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/aad85607-bf34-48b3-a44f-c8d71e1cf32f/ENCFF942NBZ.bigWig\ color 181,145,0\ longLabel Dendritic cell male adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630SSL Signal\ track wgEncodeReg4Epigenetics_ENCFF942NBZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF684PAU ENCSR803EKW Peak bigBed 5 K562 NCOA2 peaks 4 4292 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/ecf91905-cce8-4312-87bb-573c78fa9b25/ENCFF684PAU.bigBed\ labelFields none\ longLabel K562 NCOA2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR803EKW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF684PAU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF274KQT ENCSR630XDN Peak bigBed 5 T-cell female adult 18 years DNase peak 4 4293 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/912a9974-601e-47dd-9421-718bd019d967/ENCFF274KQT.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 18 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630XDN Peak\ track wgEncodeReg4Epigenetics_ENCFF274KQT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF400ZAU ENCSR803EKW Signal bigWig K562 NCOA2 ENCSR803EKW signal 2 4293 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/37ec7ae2-f2b8-495f-a2ae-a43a5036f31f/ENCFF400ZAU.bigWig\ color 254,75,173\ longLabel K562 NCOA2 ENCSR803EKW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR803EKW Signal\ track wgEncodeReg4TfChip_ENCFF400ZAU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF956GKK ENCSR630XDN Signal bigWig T-cell female adult 18 years DNase signal 2 4294 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/cc8ec130-7dbb-4825-8906-9950862d787a/ENCFF956GKK.bigWig\ color 6,218,147\ longLabel T-cell female adult 18 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR630XDN Signal\ track wgEncodeReg4Epigenetics_ENCFF956GKK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF678GSH ENCSR803FAP Peak bigBed 5 Testis tissue male adult (54 years) POLR2A peaks 4 4294 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/510b9308-ec72-46e4-a2eb-7b019a14f081/ENCFF678GSH.bigBed\ labelFields none\ longLabel Testis tissue male adult (54 years) POLR2A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR632ONQ Peak\ track wgEncodeReg4Epigenetics_ENCFF583YPB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF872VJT ENCSR803GYT Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens HIC1 HIC1 ENCSR803GYT signal 2 4297 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/04/b47faf3d-25c7-4a4a-beec-ada778dc7d9d/ENCFF872VJT.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens HIC1 HIC1 ENCSR803GYT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR803GYT Signal\ track wgEncodeReg4TfChip_ENCFF872VJT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF615BRP ENCSR632ONQ Signal bigWig Lower lobe of left lung tissue female adult 59 years DNase signal 2 4298 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/e9dba590-9d8b-46af-9556-2caadad8fc12/ENCFF615BRP.bigWig\ color 6,218,147\ longLabel Lower lobe of left lung tissue female adult 59 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR632ONQ Signal\ track wgEncodeReg4Epigenetics_ENCFF615BRP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF200LWQ ENCSR803IYP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49 ZBTB49 peaks 4 4298 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/1b369a6c-6a8e-4191-8a02-a438f7958055/ENCFF200LWQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49 ZBTB49 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR803IYP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF200LWQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF023ISC ENCSR632OWD Peak bigBed 5 Urinary bladder tissue male adult 34 years H3K4me3 peak 4 4299 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/37d60d8e-5251-4352-8f3f-fe7a2de2c543/ENCFF023ISC.bigBed\ color 255,0,0\ longLabel Urinary bladder tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR632OWD Peak\ track wgEncodeReg4Epigenetics_ENCFF023ISC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF365FMS ENCSR803IYP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49 ZBTB49 ENCSR803IYP signal 2 4299 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/b30ccc7b-8c7f-4815-be11-19e9f126a3f8/ENCFF365FMS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB49 ZBTB49 ENCSR803IYP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR803IYP Signal\ track wgEncodeReg4TfChip_ENCFF365FMS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF089KQW ENCSR632OWD Signal bigWig Urinary bladder tissue male adult 34 years H3K4me3 signal 2 4300 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/987ae955-c313-485a-9c68-e93f71802339/ENCFF089KQW.bigWig\ color 255,0,0\ longLabel Urinary bladder tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR632OWD Signal\ track wgEncodeReg4Epigenetics_ENCFF089KQW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF355PIC ENCSR804HMZ Peak bigBed 5 HepG2 HNRNPLL peaks 4 4300 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/aa3f2eff-1ab3-42b8-9e51-1079797bc59b/ENCFF355PIC.bigBed\ labelFields none\ longLabel HepG2 HNRNPLL peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR632VDU Peak\ track wgEncodeReg4Epigenetics_ENCFF826UVC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF020PYP ENCSR804HMZ Signal bigWig HepG2 HNRNPLL ENCSR804HMZ signal 2 4301 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ba2d9f64-2883-4961-8326-7abd8bbf59d4/ENCFF020PYP.bigWig\ color 137,152,82\ longLabel HepG2 HNRNPLL ENCSR804HMZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR804HMZ Signal\ track wgEncodeReg4TfChip_ENCFF020PYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF476RBQ ENCSR632VDU Signal bigWig K562 treated with DMSO for 24 hours ATAC signal 2 4302 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/5b9d1dc1-31ec-4d69-954f-e5c94974aed2/ENCFF476RBQ.bigWig\ color 2,199,185\ longLabel K562 treated with DMSO for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR632VDU Signal\ track wgEncodeReg4Epigenetics_ENCFF476RBQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF487MYN ENCSR805YLE Peak bigBed 5 Gastroesophageal sphincter tissue male adult (54 years) CTCF peaks 4 4302 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/a7138f5d-d48b-4d3a-8238-24d6025d2178/ENCFF487MYN.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR805YLE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF487MYN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF305JAB ENCSR634OAQ Peak bigBed 5 NCI-H929 CTCF peak 4 4303 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/29fe68f6-f131-4265-a5d2-60e12f92eeda/ENCFF305JAB.bigBed\ color 0,176,240\ labelFields none\ longLabel NCI-H929 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634OAQ Peak\ track wgEncodeReg4Epigenetics_ENCFF305JAB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF389OGV ENCSR805YLE Signal bigWig Gastroesophageal sphincter tissue male adult (54 years) CTCF ENCSR805YLE signal 2 4303 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/783b0f80-5028-4eae-a783-8e952cc7337e/ENCFF389OGV.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (54 years) CTCF ENCSR805YLE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR805YLE Signal\ track wgEncodeReg4TfChip_ENCFF389OGV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF327WOL ENCSR634OAQ Signal bigWig NCI-H929 CTCF signal 2 4304 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/21aac1b2-2fa2-427c-9acb-caed553671be/ENCFF327WOL.bigWig\ color 0,176,240\ longLabel NCI-H929 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634OAQ Signal\ track wgEncodeReg4Epigenetics_ENCFF327WOL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF230ZKA ENCSR807BGP Peak bigBed 5 K562 MTA1 peaks 4 4304 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/4fa90c1e-c88f-4ee4-ba9a-64e0f24150e5/ENCFF230ZKA.bigBed\ labelFields none\ longLabel K562 MTA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR807BGP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF230ZKA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF735HVS ENCSR634WYX Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 4305 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/cafbb747-fd18-4c4c-9a39-ae5d6f8080e8/ENCFF735HVS.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634WYX Peak\ track wgEncodeReg4Epigenetics_ENCFF735HVS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF134PQZ ENCSR807BGP Signal bigWig K562 MTA1 ENCSR807BGP signal 2 4305 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/b6c6aed9-90d2-4c97-948c-9bf94dd45ecd/ENCFF134PQZ.bigWig\ color 254,75,173\ longLabel K562 MTA1 ENCSR807BGP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR807BGP Signal\ track wgEncodeReg4TfChip_ENCFF134PQZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF043JFJ ENCSR634WYX Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 4306 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/11b8df20-823a-489e-aee4-3f1848e0b3d4/ENCFF043JFJ.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634WYX Signal\ track wgEncodeReg4Epigenetics_ENCFF043JFJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF181QXT ENCSR807LQP Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP2 SP2 peaks 4 4306 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/4209005e-c425-45d5-a889-c78d394dd67b/ENCFF181QXT.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP2 SP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR807LQP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF181QXT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF632WTY ENCSR634YVQ Peak bigBed 5 HK-2 DNase peak 4 4307 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/c9123048-2669-496a-a5c9-378ee40af797/ENCFF632WTY.bigBed\ color 6,218,147\ labelFields none\ longLabel HK-2 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634YVQ Peak\ track wgEncodeReg4Epigenetics_ENCFF632WTY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF986DQP ENCSR807LQP Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP2 SP2 ENCSR807LQP signal 2 4307 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/d66c9789-5084-4481-ab89-baf1e71d03ab/ENCFF986DQP.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SP2 SP2 ENCSR807LQP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR807LQP Signal\ track wgEncodeReg4TfChip_ENCFF986DQP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF299RIU ENCSR634YVQ Signal bigWig HK-2 DNase signal 2 4308 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/3461664b-6c5b-4060-a440-de432c3ab8b4/ENCFF299RIU.bigWig\ color 6,218,147\ longLabel HK-2 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634YVQ Signal\ track wgEncodeReg4Epigenetics_ENCFF299RIU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF343XWA ENCSR808AKZ Peak bigBed 5 K562 BCOR peaks 4 4308 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3659bcb7-b6a2-43d1-a096-3a8d48ee45b7/ENCFF343XWA.bigBed\ labelFields none\ longLabel K562 BCOR peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR808AKZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF343XWA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF384MLD ENCSR634ZYB Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase peak 4 4309 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/01144909-5ac2-4948-8b9f-4d083480aa18/ENCFF384MLD.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634ZYB Peak\ track wgEncodeReg4Epigenetics_ENCFF384MLD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF957TCK ENCSR808AKZ Signal bigWig K562 BCOR ENCSR808AKZ signal 2 4309 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/12fb4df3-e8fd-47cd-b4bb-69ca2ba8146d/ENCFF957TCK.bigWig\ color 254,75,173\ longLabel K562 BCOR ENCSR808AKZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR808AKZ Signal\ track wgEncodeReg4TfChip_ENCFF957TCK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF200ERT ENCSR634ZYB Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase signal 2 4310 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/702e0913-be3c-4154-a7e7-638fdce7e9bb/ENCFF200ERT.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-23 for 4 hours, 100 ng/mL Interleukin-1b for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR634ZYB Signal\ track wgEncodeReg4Epigenetics_ENCFF200ERT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF555WYO ENCSR808FFI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8 ZKSCAN8 peaks 4 4310 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/906d2da0-59b0-42b2-a4c6-ea8ee3d28e8f/ENCFF555WYO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8 ZKSCAN8 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR813QEO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF700HHQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF141RPA ENCSR635QIZ Signal bigWig Activated T-helper 1 cell female adult 33 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal 2 4318 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/ea6cb33e-95c9-4c4c-82d3-88d6b0438038/ENCFF141RPA.bigWig\ color 6,218,147\ longLabel Activated T-helper 1 cell female adult 33 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR635QIZ Signal\ track wgEncodeReg4Epigenetics_ENCFF141RPA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF015SRZ ENCSR813QEO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DPF2 DPF2 ENCSR813QEO signal 2 4318 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/a3d8daa9-8f9a-4fc8-a8c5-15a07e023a72/ENCFF015SRZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DPF2 DPF2 ENCSR813QEO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR813QEO Signal\ track wgEncodeReg4TfChip_ENCFF015SRZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF804VEK ENCSR635URJ Peak bigBed 5 T-cell female adult 25 years DNase peak 4 4319 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/62c3a363-9502-4394-958b-df19765ca9e2/ENCFF804VEK.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 25 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR635URJ Peak\ track wgEncodeReg4Epigenetics_ENCFF804VEK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF441TTT ENCSR815ZDS Peak bigBed 5 K562 SREBF1 peaks 4 4319 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3576bd78-265e-49d8-959d-0b5b4bfbe949/ENCFF441TTT.bigBed\ labelFields none\ longLabel K562 SREBF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR815ZDS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF441TTT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF914OKV ENCSR635URJ Signal bigWig T-cell female adult 25 years DNase signal 2 4320 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/26531ba1-4825-47aa-904c-9c2b7bfb13d6/ENCFF914OKV.bigWig\ color 6,218,147\ longLabel T-cell female adult 25 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR635URJ Signal\ track wgEncodeReg4Epigenetics_ENCFF914OKV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF191GNN ENCSR815ZDS Signal bigWig K562 SREBF1 ENCSR815ZDS signal 2 4320 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/9a4589a5-1209-44ad-ac3e-8fce9fee710c/ENCFF191GNN.bigWig\ color 254,75,173\ longLabel K562 SREBF1 ENCSR815ZDS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR815ZDS Signal\ track wgEncodeReg4TfChip_ENCFF191GNN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF794HKF ENCSR635VQU Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-4 for 4 hours DNase peak 4 4321 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/6a3cc97b-23bb-4c58-a09a-c0c303e93ee8/ENCFF794HKF.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-4 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR635VQU Peak\ track wgEncodeReg4Epigenetics_ENCFF794HKF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF843TII ENCSR817FMN Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 peaks 4 4321 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/8a63b848-c06a-4e5a-abe0-22efc86c9b97/ENCFF843TII.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR817FMN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF843TII\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF518FWN ENCSR635VQU Signal bigWig CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-4 for 4 hours DNase signal 2 4322 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/4cd14ff4-443d-4540-a3d2-d51e9d889592/ENCFF518FWN.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-4 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR635VQU Signal\ track wgEncodeReg4Epigenetics_ENCFF518FWN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF397AUP ENCSR817FMN Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 ENCSR817FMN signal 2 4322 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/97911260-32a0-405b-95dc-27165a811184/ENCFF397AUP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 TEAD4 ENCSR817FMN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR817FMN Signal\ track wgEncodeReg4TfChip_ENCFF397AUP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF192OFG ENCSR636DIR Peak bigBed 5 Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads DNase peak 4 4323 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/e73b032a-916f-4fdd-946d-aacb8314ceb7/ENCFF192OFG.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR817HTJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF980OWR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF964VUC ENCSR636DIR Signal bigWig Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads DNase signal 2 4324 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/53e961d7-e50e-4e57-be4a-35bcdd655364/ENCFF964VUC.bigWig\ color 6,218,147\ longLabel Activated T-helper 1 cell male adult 35 years treated with 1 μg/mL Interleukin-4 antibody , 30 ng/mL Interleukin-12 subunit alpha , 30 ng/mL Interleukin-12 subunit beta , anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR636DIR Signal\ track wgEncodeReg4Epigenetics_ENCFF964VUC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF237XNE ENCSR817HTJ Signal bigWig Foreskin keratinocyte male newborn (2-4 days) CTCF ENCSR817HTJ signal 2 4324 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/81af502a-1eae-470f-9483-97388f595acc/ENCFF237XNE.bigWig\ color 127,133,209\ longLabel Foreskin keratinocyte male newborn (2-4 days) CTCF ENCSR817HTJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR817HTJ Signal\ track wgEncodeReg4TfChip_ENCFF237XNE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF550SJE ENCSR637MUF Peak bigBed 5 GM19035 ATAC peak 4 4325 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/02/acadaec0-5279-4d48-b55b-80fd5396faad/ENCFF550SJE.bigBed\ color 2,199,185\ longLabel GM19035 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR637MUF Peak\ track wgEncodeReg4Epigenetics_ENCFF550SJE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF850OZQ ENCSR817QKV Peak bigBed 5 K562 EP400 peaks 4 4325 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ee90061d-a158-436d-b3a1-4ee921d8877a/ENCFF850OZQ.bigBed\ labelFields none\ longLabel K562 EP400 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR823ADL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF276CBT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF738JSK ENCSR641KNU Signal bigWig GM21825 ATAC signal 2 4346 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e051dc58-86be-4cc7-8e13-f1f80a93df36/ENCFF738JSK.bigWig\ color 2,199,185\ longLabel GM21825 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR641KNU Signal\ track wgEncodeReg4Epigenetics_ENCFF738JSK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF928YIM ENCSR823ADL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFXANK RFXANK ENCSR823ADL signal 2 4346 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/00776f8f-04bb-468e-b3ef-c19f44158544/ENCFF928YIM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RFXANK RFXANK ENCSR823ADL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR823ADL Signal\ track wgEncodeReg4TfChip_ENCFF928YIM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF722WCB ENCSR641QPH Peak bigBed 5 Middle frontal area 46 tissue male adult 86 years H3K27ac peak 4 4347 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/04991534-df16-4790-aec5-e01b52513b5c/ENCFF722WCB.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 86 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR825MZS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF406BOT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF468UEP ENCSR641SDI Signal bigWig Sigmoid colon tissue female adult 51 years H3K27ac signal 2 4350 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/6c885741-6eaf-4300-ba76-cf30ae198fc6/ENCFF468UEP.bigWig\ color 181,145,0\ longLabel Sigmoid colon tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR641SDI Signal\ track wgEncodeReg4Epigenetics_ENCFF468UEP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF174ODY ENCSR825MZS Signal bigWig HepG2 TAF15 ENCSR825MZS signal 2 4350 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/a8125955-b431-4e2d-a45a-20a26cdb2261/ENCFF174ODY.bigWig\ color 137,152,82\ longLabel HepG2 TAF15 ENCSR825MZS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR825MZS Signal\ track wgEncodeReg4TfChip_ENCFF174ODY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF230ECS ENCSR641YLG Peak bigBed 5 Skin epidermis tissue male adult 77 years H3K27ac peak 4 4351 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/06f0bf45-fb39-4be0-ac7b-8166d96e75ce/ENCFF230ECS.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue male adult 77 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR825RBI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF535ETE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF384IMH ENCSR641ZPF Signal bigWig Stomach tissue female adult 51 years DNase signal 2 4354 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/23/4f7a1e7a-0116-4dbf-a341-e6f4407b110f/ENCFF384IMH.bigWig\ color 6,218,147\ longLabel Stomach tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR641ZPF Signal\ track wgEncodeReg4Epigenetics_ENCFF384IMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF593FIE ENCSR825RBI Signal bigWig Suprapubic skin tissue female adult (53 years) POLR2A ENCSR825RBI signal 2 4354 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/36da580a-90da-418f-a903-0faef78a5cd2/ENCFF593FIE.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue female adult (53 years) POLR2A ENCSR825RBI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR825RBI Signal\ track wgEncodeReg4TfChip_ENCFF593FIE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF686ZOR ENCSR642BXP Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-12 subunit beta for 1 hour, Interleukin-12 subunit alpha for 1 hour DNase peak 4 4355 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/477d5ef3-ce38-4447-974d-7149191f5ef9/ENCFF686ZOR.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 39 years treated with Interleukin-12 subunit beta for 1 hour, Interleukin-12 subunit alpha for 1 hour DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR642DZF Peak\ track wgEncodeReg4Epigenetics_ENCFF203PVX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF528YED ENCSR827NWO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1 FEZF1 peaks 4 4357 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/74b48ebb-ecca-4d35-b20e-ed84f588d077/ENCFF528YED.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1 FEZF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR827NWO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF528YED\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF182EUF ENCSR642DZF Signal bigWig T-cell female adult 33 years DNase signal 2 4358 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/252786e5-bea9-48ed-93f4-a73b40e34541/ENCFF182EUF.bigWig\ color 6,218,147\ longLabel T-cell female adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR642DZF Signal\ track wgEncodeReg4Epigenetics_ENCFF182EUF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF779MAP ENCSR827NWO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1 FEZF1 ENCSR827NWO signal 2 4358 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/42301eef-6eb1-4228-a5e1-d00358af7e2d/ENCFF779MAP.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens FEZF1 FEZF1 ENCSR827NWO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR827NWO Signal\ track wgEncodeReg4TfChip_ENCFF779MAP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF131GFG ENCSR642HHF Peak bigBed 5 Adrenal gland tissue female adult 30 years H3K27ac peak 4 4359 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/fb0e63d5-a1d6-461e-82b0-31908073fe74/ENCFF131GFG.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR642HHF Peak\ track wgEncodeReg4Epigenetics_ENCFF131GFG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF781IAU ENCSR828NCB Peak bigBed 5 GM12878 GATAD2B peaks 4 4359 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/3bd39e18-b8ab-47e6-83a6-3d5ccf1410c2/ENCFF781IAU.bigBed\ labelFields none\ longLabel GM12878 GATAD2B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR828NCB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF781IAU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF244XNP ENCSR642HHF Signal bigWig Adrenal gland tissue female adult 30 years H3K27ac signal 2 4360 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/af98981f-83ca-4da5-98f8-2362499840fc/ENCFF244XNP.bigWig\ color 181,145,0\ longLabel Adrenal gland tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR642HHF Signal\ track wgEncodeReg4Epigenetics_ENCFF244XNP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF056XZR ENCSR828NCB Signal bigWig GM12878 GATAD2B ENCSR828NCB signal 2 4360 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/5227249b-3be6-4f27-b835-243f3b62987c/ENCFF056XZR.bigWig\ color 254,75,173\ longLabel GM12878 GATAD2B ENCSR828NCB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR828NCB Signal\ track wgEncodeReg4TfChip_ENCFF056XZR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF936LDA ENCSR643GHI Peak bigBed 5 CD4-positive, alpha-beta T cell female adult 33 years DNase peak 4 4361 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/dcabd18a-8824-4fe6-bb78-9ba201fc5fed/ENCFF936LDA.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell female adult 33 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR828PZH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF720RAR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF044PUS ENCSR643GHI Signal bigWig CD4-positive, alpha-beta T cell female adult 33 years DNase signal 2 4362 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/872ba425-cbee-48ef-ba13-19eb2b8b251d/ENCFF044PUS.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell female adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR643GHI Signal\ track wgEncodeReg4Epigenetics_ENCFF044PUS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF182VQJ ENCSR828PZH Signal bigWig Upper lobe of left lung tissue male adult (37 years) EP300 ENCSR828PZH signal 2 4362 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/8cb13d15-1f5b-4cec-baec-62bd731f5cbd/ENCFF182VQJ.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (37 years) EP300 ENCSR828PZH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR828PZH Signal\ track wgEncodeReg4TfChip_ENCFF182VQJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF315XIH ENCSR643TBI Peak bigBed 5 Chorionic villus tissue female embryo 40 weeks H3K27ac peak 4 4363 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/cfb9507a-c20f-49d0-9278-1babd28037a3/ENCFF315XIH.bigBed\ color 181,145,0\ longLabel Chorionic villus tissue female embryo 40 weeks H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR829HTO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF655GBO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF715DNL ENCSR643TBI Signal bigWig Chorionic villus tissue female embryo 40 weeks H3K27ac signal 2 4364 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/de06351c-a3df-4c3d-bda2-f944af5fe67f/ENCFF715DNL.bigWig\ color 181,145,0\ longLabel Chorionic villus tissue female embryo 40 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR643TBI Signal\ track wgEncodeReg4Epigenetics_ENCFF715DNL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF308OYN ENCSR829HTO Signal bigWig Prostate gland tissue male adult (54 years) CTCF ENCSR829HTO signal 2 4364 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4d285e21-44d8-487b-9dcf-83afe817889c/ENCFF308OYN.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (54 years) CTCF ENCSR829HTO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR829HTO Signal\ track wgEncodeReg4TfChip_ENCFF308OYN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF550BLV ENCSR643ZGR Peak bigBed 5 Inflammatory macrophage male adult 21 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase peak 4 4365 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/22926fba-9ac4-4412-9c46-46bf5d763e72/ENCFF550BLV.bigBed\ color 6,218,147\ labelFields none\ longLabel Inflammatory macrophage male adult 21 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR829UCH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF898RYR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF926JZL ENCSR643ZGR Signal bigWig Inflammatory macrophage male adult 21 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase signal 2 4366 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/88564240-dc01-4f11-b58b-f9c786742ca4/ENCFF926JZL.bigWig\ color 6,218,147\ longLabel Inflammatory macrophage male adult 21 years and male adult 40 years, treated with lipopolysaccharide for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR643ZGR Signal\ track wgEncodeReg4Epigenetics_ENCFF926JZL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF555JYG ENCSR829UCH Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFXL1 NFXL1 ENCSR829UCH signal 2 4366 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/c9699d22-1125-4007-8cf0-0af9f29ecf60/ENCFF555JYG.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFXL1 NFXL1 ENCSR829UCH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR829UCH Signal\ track wgEncodeReg4TfChip_ENCFF555JYG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF702BXQ ENCSR644KPP Peak bigBed 5 K562 treated with 10 nM Vorinostat for 24 hours ATAC peak 4 4367 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/f252b062-5d48-4ccb-9037-5c50da1aa05b/ENCFF702BXQ.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Vorinostat for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR644KPP Peak\ track wgEncodeReg4Epigenetics_ENCFF702BXQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF537GWI ENCSR829WBA Peak bigBed 5 MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens OVOL1 OVOL1 peaks 4 4367 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/d25088fa-684e-44a8-8422-89c3315e1e85/ENCFF537GWI.bigBed\ labelFields none\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens OVOL1 OVOL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR829WBA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF537GWI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF280CHW ENCSR644KPP Signal bigWig K562 treated with 10 nM Vorinostat for 24 hours ATAC signal 2 4368 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/64d0cb46-6472-40d6-b5d7-b0fca5e254d4/ENCFF280CHW.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Vorinostat for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR644KPP Signal\ track wgEncodeReg4Epigenetics_ENCFF280CHW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF975TWI ENCSR829WBA Signal bigWig MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens OVOL1 OVOL1 ENCSR829WBA signal 2 4368 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/a10214ad-feb5-48d8-aae9-8c978651e9e7/ENCFF975TWI.bigWig\ color 65,171,173\ longLabel MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens OVOL1 OVOL1 ENCSR829WBA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR829WBA Signal\ track wgEncodeReg4TfChip_ENCFF975TWI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF247ZOL ENCSR644SHG Peak bigBed 5 Basal cell carcinoma skin epidermis tissue male adult 58 years H3K4me3 peak 4 4369 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/6f27c152-21c2-4dea-a577-160a5d7e2522/ENCFF247ZOL.bigBed\ color 255,0,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 58 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR644SHG Peak\ track wgEncodeReg4Epigenetics_ENCFF247ZOL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF348QIP ENCSR830FJY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX18 SOX18 peaks 4 4369 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/df98011b-cef3-45a0-aa56-42f5bdc5808b/ENCFF348QIP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX18 SOX18 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR830FJY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF348QIP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF639KLT ENCSR644SHG Signal bigWig Basal cell carcinoma skin epidermis tissue male adult 58 years H3K4me3 signal 2 4370 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/d0ada2ca-add8-42c1-8a65-165412249f57/ENCFF639KLT.bigWig\ color 255,0,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 58 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR644SHG Signal\ track wgEncodeReg4Epigenetics_ENCFF639KLT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF968QSZ ENCSR830FJY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX18 SOX18 ENCSR830FJY signal 2 4370 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/b57b3623-f7ad-4cbb-a5e8-0f71e7d101af/ENCFF968QSZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX18 SOX18 ENCSR830FJY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR830FJY Signal\ track wgEncodeReg4TfChip_ENCFF968QSZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF347VDN ENCSR645FBM Peak bigBed 5 Ascending aorta tissue female adult 51 years H3K4me3 peak 4 4371 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/faed07ec-eee4-4c23-bb55-1afcadd4a5db/ENCFF347VDN.bigBed\ color 255,0,0\ longLabel Ascending aorta tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645FBM Peak\ track wgEncodeReg4Epigenetics_ENCFF347VDN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF157BEH ENCSR830LDY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2 MEIS2 peaks 4 4371 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/2782e390-bd3a-474e-ab7a-68b30ba4e393/ENCFF157BEH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2 MEIS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR830LDY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF157BEH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF935CPK ENCSR645FBM Signal bigWig Ascending aorta tissue female adult 51 years H3K4me3 signal 2 4372 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/2ad90aa6-02b8-4317-a8cd-84972a500d46/ENCFF935CPK.bigWig\ color 255,0,0\ longLabel Ascending aorta tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645FBM Signal\ track wgEncodeReg4Epigenetics_ENCFF935CPK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF789ZQD ENCSR830LDY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2 MEIS2 ENCSR830LDY signal 2 4372 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/d8110c26-cca1-47a2-a46e-0f891e285ebb/ENCFF789ZQD.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2 MEIS2 ENCSR830LDY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR830LDY Signal\ track wgEncodeReg4TfChip_ENCFF789ZQD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF990UWP ENCSR645GJD Peak bigBed 5 Kidney tissue female embryo 113 days DNase peak 4 4373 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/9a8ea43f-84a1-4ee5-9824-644f64b2d937/ENCFF990UWP.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue female embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645GJD Peak\ track wgEncodeReg4Epigenetics_ENCFF990UWP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF914UUM ENCSR831EIW Peak bigBed 5 HEK293T FOXM1 peaks 4 4373 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8250e9fd-8f39-4eae-8986-94b37876cd61/ENCFF914UUM.bigBed\ labelFields none\ longLabel HEK293T FOXM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR831EIW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF914UUM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF582XBN ENCSR645GJD Signal bigWig Kidney tissue female embryo 113 days DNase signal 2 4374 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c8c9f029-5ef1-4442-8f4d-34e22ab991f8/ENCFF582XBN.bigWig\ color 6,218,147\ longLabel Kidney tissue female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645GJD Signal\ track wgEncodeReg4Epigenetics_ENCFF582XBN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF784PBW ENCSR831EIW Signal bigWig HEK293T FOXM1 ENCSR831EIW signal 2 4374 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/db1f2f1c-4280-4015-9611-a1c003964d0b/ENCFF784PBW.bigWig\ color 92,161,153\ longLabel HEK293T FOXM1 ENCSR831EIW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR831EIW Signal\ track wgEncodeReg4TfChip_ENCFF784PBW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF898TLW ENCSR645HET Peak bigBed 5 Middle frontal area 46 tissue male adult 87 years DNase peak 4 4375 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/80da36c9-f0da-4a43-9ccb-10ea4353b3a4/ENCFF898TLW.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645HET Peak\ track wgEncodeReg4Epigenetics_ENCFF898TLW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF889WGL ENCSR832OGB Peak bigBed 5 K562 LEF1 peaks 4 4375 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/6f9a9c1e-809c-49fa-b630-bc065193a64c/ENCFF889WGL.bigBed\ labelFields none\ longLabel K562 LEF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR832OGB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF889WGL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF636BNY ENCSR645HET Signal bigWig Middle frontal area 46 tissue male adult 87 years DNase signal 2 4376 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/e653e6dd-4a60-40ee-bbca-fcc7f2db2a6c/ENCFF636BNY.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue male adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645HET Signal\ track wgEncodeReg4Epigenetics_ENCFF636BNY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF640XIF ENCSR832OGB Signal bigWig K562 LEF1 ENCSR832OGB signal 2 4376 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/6bbf4d07-1264-425d-8394-db319c08e8ca/ENCFF640XIF.bigWig\ color 254,75,173\ longLabel K562 LEF1 ENCSR832OGB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR832OGB Signal\ track wgEncodeReg4TfChip_ENCFF640XIF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF538ZCA ENCSR645MXO Peak bigBed 5 Heart right ventricle tissue male adult 66 years H3K27ac peak 4 4377 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/874d459e-b4e6-4308-a1aa-6668b1707b2d/ENCFF538ZCA.bigBed\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 66 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645MXO Peak\ track wgEncodeReg4Epigenetics_ENCFF538ZCA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF054INI ENCSR832PID Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318 ZNF318 peaks 4 4377 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/3dea9d2d-7c9f-4c91-9f3f-a56b11338a27/ENCFF054INI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318 ZNF318 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR832PID Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF054INI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF400FAA ENCSR645MXO Signal bigWig Heart right ventricle tissue male adult 66 years H3K27ac signal 2 4378 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/03a7705b-586b-497a-9af6-cd008af0f96f/ENCFF400FAA.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 66 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645MXO Signal\ track wgEncodeReg4Epigenetics_ENCFF400FAA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF665JGL ENCSR832PID Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318 ZNF318 ENCSR832PID signal 2 4378 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/ac8a05d7-5479-45cb-822e-c6bcd80816c1/ENCFF665JGL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318 ZNF318 ENCSR832PID signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR832PID Signal\ track wgEncodeReg4TfChip_ENCFF665JGL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF137ULI ENCSR645SYH Peak bigBed 5 Esophagus tissue female adult 30 years H3K27ac peak 4 4379 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/59d3b519-f7d6-4a75-9b51-b47304c88565/ENCFF137ULI.bigBed\ color 181,145,0\ longLabel Esophagus tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645SYH Peak\ track wgEncodeReg4Epigenetics_ENCFF137ULI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF483ZLP ENCSR832TWW Peak bigBed 5 Middle frontal area 46 tissue male adult (82 years) CTCF peaks 4 4379 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/ffd8a25a-d432-46c7-b3b9-b896ad2c00f8/ENCFF483ZLP.bigBed\ labelFields none\ longLabel Middle frontal area 46 tissue male adult (82 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR832TWW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF483ZLP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF322RWX ENCSR645SYH Signal bigWig Esophagus tissue female adult 30 years H3K27ac signal 2 4380 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/5b7a1ec6-3f84-413b-9be7-e69f49c5ddc4/ENCFF322RWX.bigWig\ color 181,145,0\ longLabel Esophagus tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR645SYH Signal\ track wgEncodeReg4Epigenetics_ENCFF322RWX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF423POG ENCSR832TWW Signal bigWig Middle frontal area 46 tissue male adult (82 years) CTCF ENCSR832TWW signal 2 4380 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/3c7aa4d0-3d14-460c-a048-53a7eda0bd28/ENCFF423POG.bigWig\ color 155,155,18\ longLabel Middle frontal area 46 tissue male adult (82 years) CTCF ENCSR832TWW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR832TWW Signal\ track wgEncodeReg4TfChip_ENCFF423POG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF966DDC ENCSR646JBR Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 4381 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/dc74da47-497a-4168-bf84-7287a2828b05/ENCFF966DDC.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR833FWC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF077CMZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF860TZJ ENCSR646JBR Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 4382 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/958ef5db-1f5a-4f7e-845e-e61d452b894c/ENCFF860TZJ.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR646JBR Signal\ track wgEncodeReg4Epigenetics_ENCFF860TZJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF517GQE ENCSR833FWC Signal bigWig Transverse colon tissue male adult (54 years) CTCF ENCSR833FWC signal 2 4382 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/caf19b7f-913e-44d3-b87c-f60d9e19d1ea/ENCFF517GQE.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (54 years) CTCF ENCSR833FWC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR833FWC Signal\ track wgEncodeReg4TfChip_ENCFF517GQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF459FTD ENCSR647AOY Peak bigBed 5 Lung tissue female adult 47 years ATAC peak 4 4383 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/bfb6d044-d716-4aa5-aff6-3d3476d4f774/ENCFF459FTD.bigBed\ color 2,199,185\ longLabel Lung tissue female adult 47 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR647AOY Peak\ track wgEncodeReg4Epigenetics_ENCFF459FTD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF784HCJ ENCSR835TCD Peak bigBed 5 K562 stably expressing HDAC8 HDAC8 peaks 4 4383 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8284ac84-d0f2-4edf-9241-b84a4b50ec81/ENCFF784HCJ.bigBed\ labelFields none\ longLabel K562 stably expressing HDAC8 HDAC8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR835TCD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF784HCJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF260QGF ENCSR647AOY Signal bigWig Lung tissue female adult 47 years ATAC signal 2 4384 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/aeaa5b14-d3cc-4a1e-950b-1c0a6430e61a/ENCFF260QGF.bigWig\ color 2,199,185\ longLabel Lung tissue female adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR647AOY Signal\ track wgEncodeReg4Epigenetics_ENCFF260QGF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF765DXU ENCSR835TCD Signal bigWig K562 stably expressing HDAC8 HDAC8 ENCSR835TCD signal 2 4384 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/9a051930-48bf-4358-8527-ef1cdc47a88e/ENCFF765DXU.bigWig\ color 254,75,173\ longLabel K562 stably expressing HDAC8 HDAC8 ENCSR835TCD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR835TCD Signal\ track wgEncodeReg4TfChip_ENCFF765DXU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF897DVN ENCSR647HAQ Peak bigBed 5 Vagina tissue female adult 51 years H3K4me3 peak 4 4385 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/1acfe6e5-6f46-401a-b860-10eb5887b58a/ENCFF897DVN.bigBed\ color 255,0,0\ longLabel Vagina tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR835VBH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF710BXD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF904YBG ENCSR647HAQ Signal bigWig Vagina tissue female adult 51 years H3K4me3 signal 2 4386 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/c5e5b5b4-1e42-4fcb-aa9a-f4e4cac231d6/ENCFF904YBG.bigWig\ color 255,0,0\ longLabel Vagina tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR647HAQ Signal\ track wgEncodeReg4Epigenetics_ENCFF904YBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF905ISB ENCSR835VBH Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSRNP3 treated with 6 μM all-trans-retinoic acid for 48 hours CSRNP3 ENCSR835VBH signal 2 4386 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/16/7114ed30-23ad-488e-8b4a-5de6a0fd3fad/ENCFF905ISB.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSRNP3 treated with 6 μM all-trans-retinoic acid for 48 hours CSRNP3 ENCSR835VBH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR835VBH Signal\ track wgEncodeReg4TfChip_ENCFF905ISB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF427RFE ENCSR647SQF Peak bigBed 5 Mesothelial cell of epicardium CTCF peak 4 4387 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/f10e952c-d5e9-4150-a422-cb06b41e25b5/ENCFF427RFE.bigBed\ color 0,176,240\ labelFields none\ longLabel Mesothelial cell of epicardium CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR647SQF Peak\ track wgEncodeReg4Epigenetics_ENCFF427RFE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF919OMX ENCSR835XKS Peak bigBed 5 GM12878 TRIM22 peaks 4 4387 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/22e22495-3f90-4369-a686-547899a80bfe/ENCFF919OMX.bigBed\ labelFields none\ longLabel GM12878 TRIM22 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR835XKS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF919OMX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962LOU ENCSR647SQF Signal bigWig Mesothelial cell of epicardium CTCF signal 2 4388 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/1499d339-3748-4d24-ae22-78fe2d824c1a/ENCFF962LOU.bigWig\ color 0,176,240\ longLabel Mesothelial cell of epicardium CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR647SQF Signal\ track wgEncodeReg4Epigenetics_ENCFF962LOU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF538KFN ENCSR835XKS Signal bigWig GM12878 TRIM22 ENCSR835XKS signal 2 4388 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/cab31450-c93e-475e-9b31-b5a6302b1911/ENCFF538KFN.bigWig\ color 254,75,173\ longLabel GM12878 TRIM22 ENCSR835XKS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR835XKS Signal\ track wgEncodeReg4TfChip_ENCFF538KFN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF356AWC ENCSR648RAX Peak bigBed 5 Placenta tissue female embryo 85 days DNase peak 4 4389 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/b50d9bd6-b2f8-4f00-a5e9-0e2b5c03b4a4/ENCFF356AWC.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR648RAX Peak\ track wgEncodeReg4Epigenetics_ENCFF356AWC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF130SGK ENCSR837EYC Peak bigBed 5 K562 NRF1 peaks 4 4389 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/8a69ae26-3e99-4e62-8a69-5fbfdbeb861f/ENCFF130SGK.bigBed\ labelFields none\ longLabel K562 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837EYC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF130SGK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF297HLF ENCSR648RAX Signal bigWig Placenta tissue female embryo 85 days DNase signal 2 4390 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/0c8a4c59-9928-48de-bc3d-eb9fe84fb678/ENCFF297HLF.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR648RAX Signal\ track wgEncodeReg4Epigenetics_ENCFF297HLF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF744HIE ENCSR837EYC Signal bigWig K562 NRF1 ENCSR837EYC signal 2 4390 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e5dbf690-31f7-46df-8807-c04fedc581a9/ENCFF744HIE.bigWig\ color 254,75,173\ longLabel K562 NRF1 ENCSR837EYC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837EYC Signal\ track wgEncodeReg4TfChip_ENCFF744HIE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF060IIB ENCSR649KBB Peak bigBed 5 Brain tissue male embryo 122 days DNase peak 4 4391 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/99a4dd6f-2144-49c7-b5c8-70d9cd1adcf1/ENCFF060IIB.bigBed\ color 6,218,147\ labelFields none\ longLabel Brain tissue male embryo 122 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR649KBB Peak\ track wgEncodeReg4Epigenetics_ENCFF060IIB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF905UTT ENCSR837GLU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232 ZNF232 peaks 4 4391 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/feb56d74-79b6-4bc3-b967-13935c50d504/ENCFF905UTT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232 ZNF232 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837GLU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF905UTT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF593ZPC ENCSR649KBB Signal bigWig Brain tissue male embryo 122 days DNase signal 2 4392 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/c5642246-af8c-4738-9d33-0da726185f51/ENCFF593ZPC.bigWig\ color 6,218,147\ longLabel Brain tissue male embryo 122 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR649KBB Signal\ track wgEncodeReg4Epigenetics_ENCFF593ZPC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF641LDS ENCSR837GLU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232 ZNF232 ENCSR837GLU signal 2 4392 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/97069046-3f82-45f2-8f15-323f232ba598/ENCFF641LDS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232 ZNF232 ENCSR837GLU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837GLU Signal\ track wgEncodeReg4TfChip_ENCFF641LDS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF292QKO ENCSR649MJI Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 4393 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/0041a1d1-9dcc-456c-9dd7-930488ce1b18/ENCFF292QKO.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR649MJI Peak\ track wgEncodeReg4Epigenetics_ENCFF292QKO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF007WWT ENCSR837GTK Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) JUND peaks 4 4393 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/9cfe7fa7-d827-43f6-943b-5aeb92b1ac72/ENCFF007WWT.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) JUND peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837GTK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF007WWT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF539NFV ENCSR649MJI Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 4394 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/757f1dc7-12bd-49c7-ba65-fb1bd53c210d/ENCFF539NFV.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR649MJI Signal\ track wgEncodeReg4Epigenetics_ENCFF539NFV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF983ZXM ENCSR837GTK Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) JUND ENCSR837GTK signal 2 4394 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/2075622c-373c-4539-961a-4004871e476d/ENCFF983ZXM.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) JUND ENCSR837GTK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837GTK Signal\ track wgEncodeReg4TfChip_ENCFF983ZXM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF238AND ENCSR649PJN Peak bigBed 5 Muscle of arm tissue male embryo 97 days DNase peak 4 4395 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/c15bfbf2-b6e3-4d4f-9a1d-0f09cc7e36c4/ENCFF238AND.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837YGS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF518LYG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF527AEJ ENCSR649PJN Signal bigWig Muscle of arm tissue male embryo 97 days DNase signal 2 4396 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/add2b734-ad78-4346-8e3e-527b7610d2a6/ENCFF527AEJ.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR649PJN Signal\ track wgEncodeReg4Epigenetics_ENCFF527AEJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF437TOP ENCSR837YGS Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF608 ENCSR837YGS signal 2 4396 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/30/cab07451-7ca4-417c-96e5-7b8903d32e1b/ENCFF437TOP.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens ZNF608 treated with 6 μM all-trans-retinoic acid for 48 hours ZNF608 ENCSR837YGS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR837YGS Signal\ track wgEncodeReg4TfChip_ENCFF437TOP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF051ZNF ENCSR650FLQ Peak bigBed 5 Upper lobe of left lung tissue male adult 54 years DNase peak 4 4397 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/1d8e63bf-eded-4c77-afb9-1c880fe38c11/ENCFF051ZNF.bigBed\ color 6,218,147\ labelFields none\ longLabel Upper lobe of left lung tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR839AJZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF070XRR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF806NJW ENCSR650TZF Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 4400 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/39e23794-dbf9-4418-8235-dd3771f93c26/ENCFF806NJW.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR650TZF Signal\ track wgEncodeReg4Epigenetics_ENCFF806NJW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF984NMY ENCSR839AJZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF446 ZNF446 ENCSR839AJZ signal 2 4400 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/c649d4ce-c8ea-4d7f-8510-8c8da3f41555/ENCFF984NMY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF446 ZNF446 ENCSR839AJZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR839AJZ Signal\ track wgEncodeReg4TfChip_ENCFF984NMY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF466OIH ENCSR651SOJ Peak bigBed 5 Adrenal gland tissue female adult 47 years ATAC peak 4 4401 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/e5f043c0-2b1d-4475-bd21-cd46c19d4aa6/ENCFF466OIH.bigBed\ color 2,199,185\ longLabel Adrenal gland tissue female adult 47 years ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR839XZU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF391UGE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF748LCE ENCSR651SOJ Signal bigWig Adrenal gland tissue female adult 47 years ATAC signal 2 4402 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/c49ba2f3-2830-4b75-ad49-b0359cbd621d/ENCFF748LCE.bigWig\ color 2,199,185\ longLabel Adrenal gland tissue female adult 47 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR651SOJ Signal\ track wgEncodeReg4Epigenetics_ENCFF748LCE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF657GQY ENCSR839XZU Signal bigWig GM12878 CREM ENCSR839XZU signal 2 4402 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/6bf337e9-ec97-4619-9c8b-f89c4209f2a9/ENCFF657GQY.bigWig\ color 254,75,173\ longLabel GM12878 CREM ENCSR839XZU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR839XZU Signal\ track wgEncodeReg4TfChip_ENCFF657GQY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF274MUS ENCSR652IZW Peak bigBed 5 Posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 4403 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/b274c89b-9b31-4ca5-9a24-50577b5c076a/ENCFF274MUS.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR652IZW Peak\ track wgEncodeReg4Epigenetics_ENCFF274MUS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF741WMU ENCSR840EYN Peak bigBed 5 Heart right ventricle tissue female adult (59 years) CTCF peaks 4 4403 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/2aefe3c4-cb46-44fa-8f68-f94e18e1357a/ENCFF741WMU.bigBed\ labelFields none\ longLabel Heart right ventricle tissue female adult (59 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR840EYN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF741WMU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF636JMM ENCSR652IZW Signal bigWig Posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 4404 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/2744e15f-d2a3-45f7-8c99-97ff6b1ff5ca/ENCFF636JMM.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR652IZW Signal\ track wgEncodeReg4Epigenetics_ENCFF636JMM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF317FXL ENCSR840EYN Signal bigWig Heart right ventricle tissue female adult (59 years) CTCF ENCSR840EYN signal 2 4404 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/fcaaab19-bf28-4865-bcc0-b9da94d4ca77/ENCFF317FXL.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue female adult (59 years) CTCF ENCSR840EYN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR840EYN Signal\ track wgEncodeReg4TfChip_ENCFF317FXL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF265RJW ENCSR652QNW Peak bigBed 5 Cardiac muscle cell originated from RUES2 H3K4me3 peak 4 4405 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/c13aede5-01c1-4662-8ffd-a4adc660a648/ENCFF265RJW.bigBed\ color 255,0,0\ longLabel Cardiac muscle cell originated from RUES2 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR652QNW Peak\ track wgEncodeReg4Epigenetics_ENCFF265RJW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF692SMY ENCSR841NDX Peak bigBed 5 GM12878 ELF1 peaks 4 4405 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8a9285c4-d7c6-466d-b407-9917d3e6cb87/ENCFF692SMY.bigBed\ labelFields none\ longLabel GM12878 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR841NDX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF692SMY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF207MNM ENCSR652QNW Signal bigWig Cardiac muscle cell originated from RUES2 H3K4me3 signal 2 4406 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/1a2e25c0-fd22-483d-9b3e-4055739b1e78/ENCFF207MNM.bigWig\ color 255,0,0\ longLabel Cardiac muscle cell originated from RUES2 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR652QNW Signal\ track wgEncodeReg4Epigenetics_ENCFF207MNM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF137FIN ENCSR841NDX Signal bigWig GM12878 ELF1 ENCSR841NDX signal 2 4406 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/85862d82-afab-4d0c-8db0-a5e1b3845f69/ENCFF137FIN.bigWig\ color 254,75,173\ longLabel GM12878 ELF1 ENCSR841NDX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR841NDX Signal\ track wgEncodeReg4TfChip_ENCFF137FIN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF196PGN ENCSR653ISV Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase peak 4 4407 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b6a4be0c-626f-460b-8af6-58e8da98eda9/ENCFF196PGN.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR653ISV Peak\ track wgEncodeReg4Epigenetics_ENCFF196PGN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF679UFD ENCSR841YWU Peak bigBed 5 MCF-7 E4F1 peaks 4 4407 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/10698ab8-06a0-4278-9087-c4e99f30c202/ENCFF679UFD.bigBed\ labelFields none\ longLabel MCF-7 E4F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR841YWU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF679UFD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF802FLJ ENCSR653ISV Signal bigWig Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal 2 4408 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/6ba31099-126a-4c9a-a708-559ef29a533e/ENCFF802FLJ.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR653ISV Signal\ track wgEncodeReg4Epigenetics_ENCFF802FLJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF204BXZ ENCSR841YWU Signal bigWig MCF-7 E4F1 ENCSR841YWU signal 2 4408 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/16fde4a3-5c22-4172-9986-b27724cc052c/ENCFF204BXZ.bigWig\ color 65,171,173\ longLabel MCF-7 E4F1 ENCSR841YWU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR841YWU Signal\ track wgEncodeReg4TfChip_ENCFF204BXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF374WLX ENCSR653OVF Peak bigBed 5 Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak 4 4409 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/503bc4a9-0f1d-41da-83bc-71250847ac2d/ENCFF374WLX.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR653OVF Peak\ track wgEncodeReg4Epigenetics_ENCFF374WLX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF595LWL ENCSR842SRB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF350 ZNF350 peaks 4 4409 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/15/80727bcd-1614-4ad7-811b-32cf65aea8b7/ENCFF595LWL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF350 ZNF350 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR842SRB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF595LWL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF233JIA ENCSR653OVF Signal bigWig Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal 2 4410 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/a0408373-5791-4ae4-9724-1ca07555ffdf/ENCFF233JIA.bigWig\ color 6,218,147\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR653OVF Signal\ track wgEncodeReg4Epigenetics_ENCFF233JIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF549YPC ENCSR842SRB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF350 ZNF350 ENCSR842SRB signal 2 4410 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/15/f1772811-b01e-4844-8044-398f557028e8/ENCFF549YPC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF350 ZNF350 ENCSR842SRB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR842SRB Signal\ track wgEncodeReg4TfChip_ENCFF549YPC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF331IPM ENCSR653VSR Peak bigBed 5 Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC peak 4 4411 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/c7289067-bbf6-4d35-ba1c-277885c51822/ENCFF331IPM.bigBed\ color 2,199,185\ longLabel Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR653VSR Peak\ track wgEncodeReg4Epigenetics_ENCFF331IPM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF053XGJ ENCSR843JCI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT3 ZMAT3 peaks 4 4411 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/9a537044-177c-431f-b6f9-1ce40916cb30/ENCFF053XGJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT3 ZMAT3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR843JCI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF053XGJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF333YCC ENCSR653VSR Signal bigWig Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC signal 2 4412 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/2e15cd3c-5086-4b16-bc1e-b6b26a0523f9/ENCFF333YCC.bigWig\ color 2,199,185\ longLabel Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR653VSR Signal\ track wgEncodeReg4Epigenetics_ENCFF333YCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF475ZZS ENCSR843JCI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT3 ZMAT3 ENCSR843JCI signal 2 4412 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/e601ab17-e860-41d1-824c-f76aa4888e35/ENCFF475ZZS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT3 ZMAT3 ENCSR843JCI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR843JCI Signal\ track wgEncodeReg4TfChip_ENCFF475ZZS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF449EXP ENCSR654GSG Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue male adult 90 or above years DNase peak 4 4413 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/edc423d3-04d2-4262-bc0c-b1e5c1571484/ENCFF449EXP.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue male adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR654GSG Peak\ track wgEncodeReg4Epigenetics_ENCFF449EXP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF442QNK ENCSR843ZUP Peak bigBed 5 Neural cell originated from H1 EP300 peaks 4 4413 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/bfcb8091-373b-4e23-adec-25428284f6ed/ENCFF442QNK.bigBed\ labelFields none\ longLabel Neural cell originated from H1 EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR843ZUP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF442QNK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF825TKA ENCSR654GSG Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue male adult 90 or above years DNase signal 2 4414 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/02e1baf6-d825-4026-8e1b-8a35ce23ca54/ENCFF825TKA.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue male adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR654GSG Signal\ track wgEncodeReg4Epigenetics_ENCFF825TKA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF053OBW ENCSR843ZUP Signal bigWig Neural cell originated from H1 EP300 ENCSR843ZUP signal 2 4414 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/1eb2cb1d-679e-44f2-9d3f-5938f2895347/ENCFF053OBW.bigWig\ color 155,155,18\ longLabel Neural cell originated from H1 EP300 ENCSR843ZUP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR843ZUP Signal\ track wgEncodeReg4TfChip_ENCFF053OBW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF065NKV ENCSR654LST Peak bigBed 5 Immature natural killer cell DNase peak 4 4415 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/0774eff1-e16e-499e-97ed-446a626a623e/ENCFF065NKV.bigBed\ color 6,218,147\ labelFields none\ longLabel Immature natural killer cell DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR844PVS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF960NNA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF470KIN ENCSR654LST Signal bigWig Immature natural killer cell DNase signal 2 4416 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/f786da28-514d-436b-888c-d6cfd90fe752/ENCFF470KIN.bigWig\ color 6,218,147\ longLabel Immature natural killer cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR654LST Signal\ track wgEncodeReg4Epigenetics_ENCFF470KIN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF735YEL ENCSR844PVS Signal bigWig Breast epithelium tissue male adult (54 years) POLR2AphosphoS5 ENCSR844PVS signal 2 4416 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ffadaa8d-80a9-4a7d-b20d-f61c2c941e2a/ENCFF735YEL.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue male adult (54 years) POLR2AphosphoS5 ENCSR844PVS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR844PVS Signal\ track wgEncodeReg4TfChip_ENCFF735YEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF875CTC ENCSR654UYP Peak bigBed 5 Breast epithelium tissue female adult 53 years ATAC peak 4 4417 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/a8facb7b-41c3-4054-97c1-a6483a18561d/ENCFF875CTC.bigBed\ color 2,199,185\ longLabel Breast epithelium tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR654UYP Peak\ track wgEncodeReg4Epigenetics_ENCFF875CTC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF271FQR ENCSR845BCL Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 peaks 4 4417 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/52802d4f-da3f-444c-9264-f35ca9ae1fa3/ENCFF271FQR.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR845BCL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF271FQR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF507JTQ ENCSR654UYP Signal bigWig Breast epithelium tissue female adult 53 years ATAC signal 2 4418 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/d96cc236-cf8f-4b71-b999-725de74e101a/ENCFF507JTQ.bigWig\ color 2,199,185\ longLabel Breast epithelium tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR654UYP Signal\ track wgEncodeReg4Epigenetics_ENCFF507JTQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF608OJM ENCSR845BCL Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 ENCSR845BCL signal 2 4418 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/327ac700-1a91-4064-80d7-38b548bf4300/ENCFF608OJM.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF639 ZNF639 ENCSR845BCL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR845BCL Signal\ track wgEncodeReg4TfChip_ENCFF608OJM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF902RQN ENCSR655ECZ Peak bigBed 5 Vagina tissue female adult 51 years CTCF peak 4 4419 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/9ff2e56f-9f5c-49b3-9352-2cd04cdb1333/ENCFF902RQN.bigBed\ color 0,176,240\ labelFields none\ longLabel Vagina tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR655ECZ Peak\ track wgEncodeReg4Epigenetics_ENCFF902RQN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF252UBR ENCSR846JKO Peak bigBed 5 Ascending aorta tissue female adult (51 years) CTCF peaks 4 4419 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2019/09/07/e1a4b9b7-ee86-47a8-ac25-45280ce0fe89/ENCFF252UBR.bigBed\ labelFields none\ longLabel Ascending aorta tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR846JKO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF252UBR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF258LTU ENCSR655ECZ Signal bigWig Vagina tissue female adult 51 years CTCF signal 2 4420 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/0763e3aa-a061-4862-81fa-9bcdeac3ae56/ENCFF258LTU.bigWig\ color 0,176,240\ longLabel Vagina tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR655ECZ Signal\ track wgEncodeReg4Epigenetics_ENCFF258LTU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF880CZK ENCSR846JKO Signal bigWig Ascending aorta tissue female adult (51 years) CTCF ENCSR846JKO signal 2 4420 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/12afe140-37a1-42d7-8fc1-08e9f7918a3e/ENCFF880CZK.bigWig\ color 255,37,41\ longLabel Ascending aorta tissue female adult (51 years) CTCF ENCSR846JKO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR846JKO Signal\ track wgEncodeReg4TfChip_ENCFF880CZK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF923CIE ENCSR655XLM Peak bigBed 5 Small intestine tissue female adult 30 years H3K27ac peak 4 4421 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/49bd070d-c907-4e95-a06f-95375f1ae036/ENCFF923CIE.bigBed\ color 181,145,0\ longLabel Small intestine tissue female adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR655XLM Peak\ track wgEncodeReg4Epigenetics_ENCFF923CIE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF092GVW ENCSR847DIT Peak bigBed 5 Liver tissue female child (4 years) MAX peaks 4 4421 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/ebe1a75c-cc39-499a-ad63-cf7dacea37e4/ENCFF092GVW.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) MAX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR847DIT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF092GVW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF310VRG ENCSR655XLM Signal bigWig Small intestine tissue female adult 30 years H3K27ac signal 2 4422 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/1fba1978-3fa5-4aea-b07a-b7de26e91f5c/ENCFF310VRG.bigWig\ color 181,145,0\ longLabel Small intestine tissue female adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR655XLM Signal\ track wgEncodeReg4Epigenetics_ENCFF310VRG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF259IHT ENCSR847DIT Signal bigWig Liver tissue female child (4 years) MAX ENCSR847DIT signal 2 4422 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/3f79e449-23fa-488c-a464-9795a75cbc3a/ENCFF259IHT.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) MAX ENCSR847DIT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR847DIT Signal\ track wgEncodeReg4TfChip_ENCFF259IHT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF415YFE ENCSR656KLT Peak bigBed 5 Placenta tissue female embryo DNase peak 4 4423 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/fef8357d-f70b-4ffe-a9a0-f8efe75b8567/ENCFF415YFE.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue female embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656KLT Peak\ track wgEncodeReg4Epigenetics_ENCFF415YFE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF457GZC ENCSR847LBF Peak bigBed 5 K562 stably expressing FOXJ2 FOXJ2 peaks 4 4423 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0d0757a2-ca04-4cb5-979d-fafb0c483ea5/ENCFF457GZC.bigBed\ labelFields none\ longLabel K562 stably expressing FOXJ2 FOXJ2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR847LBF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF457GZC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF013LGY ENCSR656KLT Signal bigWig Placenta tissue female embryo DNase signal 2 4424 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b1509d3c-6f19-4688-bc59-af5f24bb28c1/ENCFF013LGY.bigWig\ color 6,218,147\ longLabel Placenta tissue female embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656KLT Signal\ track wgEncodeReg4Epigenetics_ENCFF013LGY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF412DEZ ENCSR847LBF Signal bigWig K562 stably expressing FOXJ2 FOXJ2 ENCSR847LBF signal 2 4424 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/3463b647-5ad6-489d-8b03-0f882e345193/ENCFF412DEZ.bigWig\ color 254,75,173\ longLabel K562 stably expressing FOXJ2 FOXJ2 ENCSR847LBF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR847LBF Signal\ track wgEncodeReg4TfChip_ENCFF412DEZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF563XGA ENCSR656PGJ Peak bigBed 5 UCSF-4 H3K27ac peak 4 4425 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7167a705-5e3c-40d0-9724-ec7f5b300ac2/ENCFF563XGA.bigBed\ color 181,145,0\ longLabel UCSF-4 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656PGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF563XGA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF812HQJ ENCSR847OSL Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 4425 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/7c1bd867-427e-4e0e-8aa0-dcd18e5323f5/ENCFF812HQJ.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR847OSL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF812HQJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF504BRW ENCSR656PGJ Signal bigWig UCSF-4 H3K27ac signal 2 4426 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/976a55db-d6d7-4cde-b126-46f05915dd2b/ENCFF504BRW.bigWig\ color 181,145,0\ longLabel UCSF-4 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656PGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF504BRW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF374AEG ENCSR847OSL Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR847OSL signal 2 4426 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/bedefd01-580c-418f-aafb-6e2c3ff688ed/ENCFF374AEG.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF ENCSR847OSL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR847OSL Signal\ track wgEncodeReg4TfChip_ENCFF374AEG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF702FKU ENCSR656QYL Peak bigBed 5 Renal cortex interstitium tissue female embryo 103 days DNase peak 4 4427 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/66efdad9-a45e-4ac1-9788-8a56eccedec3/ENCFF702FKU.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal cortex interstitium tissue female embryo 103 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656QYL Peak\ track wgEncodeReg4Epigenetics_ENCFF702FKU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF629OUL ENCSR848AOP Peak bigBed 5 K562 RBM22 peaks 4 4427 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/fad62c1f-945e-4f75-acec-e3732b4ef367/ENCFF629OUL.bigBed\ labelFields none\ longLabel K562 RBM22 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR848AOP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF629OUL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF969UYR ENCSR656QYL Signal bigWig Renal cortex interstitium tissue female embryo 103 days DNase signal 2 4428 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/773f9c04-6207-494b-96d9-c11ecfa6a3b9/ENCFF969UYR.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue female embryo 103 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656QYL Signal\ track wgEncodeReg4Epigenetics_ENCFF969UYR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF338KQK ENCSR848AOP Signal bigWig K562 RBM22 ENCSR848AOP signal 2 4428 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d1889e4c-9b97-4f02-8857-48c0deab1c9d/ENCFF338KQK.bigWig\ color 254,75,173\ longLabel K562 RBM22 ENCSR848AOP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR848AOP Signal\ track wgEncodeReg4TfChip_ENCFF338KQK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF824EIO ENCSR656ZEQ Peak bigBed 5 Rectal smooth muscle tissue tissue female adult 50 years H3K27ac peak 4 4429 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/1bc7898b-3e27-43f2-9d8a-bb462aa86967/ENCFF824EIO.bigBed\ color 181,145,0\ longLabel Rectal smooth muscle tissue tissue female adult 50 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656ZEQ Peak\ track wgEncodeReg4Epigenetics_ENCFF824EIO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF667RVD ENCSR848YWD Peak bigBed 5 HepG2 ZMYM3 peaks 4 4429 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/4c5b4742-6aaf-43bd-83c8-2a57ad34aa2d/ENCFF667RVD.bigBed\ labelFields none\ longLabel HepG2 ZMYM3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR848YWD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF667RVD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF917QCC ENCSR656ZEQ Signal bigWig Rectal smooth muscle tissue tissue female adult 50 years H3K27ac signal 2 4430 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/b26b5907-873c-4ca4-998d-10fa27dccd66/ENCFF917QCC.bigWig\ color 181,145,0\ longLabel Rectal smooth muscle tissue tissue female adult 50 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR656ZEQ Signal\ track wgEncodeReg4Epigenetics_ENCFF917QCC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF722IVD ENCSR848YWD Signal bigWig HepG2 ZMYM3 ENCSR848YWD signal 2 4430 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/2cf3b1c4-525c-4e26-829d-14709aebc5c6/ENCFF722IVD.bigWig\ color 137,152,82\ longLabel HepG2 ZMYM3 ENCSR848YWD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR848YWD Signal\ track wgEncodeReg4TfChip_ENCFF722IVD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF388YQR ENCSR657DYL Peak bigBed 5 GM23338 originated from GM23248 H3K4me3 peak 4 4431 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/bdc0d891-a042-45c0-bbb0-3602f7fd7ca1/ENCFF388YQR.bigBed\ color 255,0,0\ longLabel GM23338 originated from GM23248 H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR849DFF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF225AJT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF446OPT ENCSR657DYL Signal bigWig GM23338 originated from GM23248 H3K4me3 signal 2 4432 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/7fd6e2a1-fc83-4cb5-ac9a-cee7f393f317/ENCFF446OPT.bigWig\ color 255,0,0\ longLabel GM23338 originated from GM23248 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR657DYL Signal\ track wgEncodeReg4Epigenetics_ENCFF446OPT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF924QDD ENCSR849DFF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PBX2 PBX2 ENCSR849DFF signal 2 4432 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f2ebf677-d407-4cde-865c-891dd44ad871/ENCFF924QDD.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PBX2 PBX2 ENCSR849DFF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR849DFF Signal\ track wgEncodeReg4TfChip_ENCFF924QDD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF499GSM ENCSR657PXQ Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 4433 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/0a957a72-9d6c-4674-85d3-5044752b41e9/ENCFF499GSM.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR849TMV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF372NPG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF895OTG ENCSR657RRI Signal bigWig Loucy H3K4me3 signal 2 4436 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/92233e6c-c4c6-4499-9d8a-e35d423db636/ENCFF895OTG.bigWig\ color 255,0,0\ longLabel Loucy H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR657RRI Signal\ track wgEncodeReg4Epigenetics_ENCFF895OTG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF165UZH ENCSR849TMV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SIX4 SIX4 ENCSR849TMV signal 2 4436 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/499f431f-6de9-46c7-ae12-d117e9f545c7/ENCFF165UZH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SIX4 SIX4 ENCSR849TMV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR849TMV Signal\ track wgEncodeReg4TfChip_ENCFF165UZH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF711ORK ENCSR658NVL Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak 4 4437 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/631ef53c-d6d9-4edf-a628-5198543f686d/ENCFF711ORK.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR658NVL Peak\ track wgEncodeReg4Epigenetics_ENCFF711ORK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF143PXG ENCSR849WCQ Peak bigBed 5 GM12878 ASH2L peaks 4 4437 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/f1d6cb5a-c590-40f6-9d7c-23b4559bc1b7/ENCFF143PXG.bigBed\ labelFields none\ longLabel GM12878 ASH2L peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR849WCQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF143PXG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF845MYW ENCSR658NVL Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal 2 4438 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/ce13c708-8876-461a-9036-d7dd97393876/ENCFF845MYW.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR658NVL Signal\ track wgEncodeReg4Epigenetics_ENCFF845MYW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF407QCF ENCSR849WCQ Signal bigWig GM12878 ASH2L ENCSR849WCQ signal 2 4438 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e4c22b28-c01d-412c-8f57-9f9fb2e25829/ENCFF407QCF.bigWig\ color 254,75,173\ longLabel GM12878 ASH2L ENCSR849WCQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR849WCQ Signal\ track wgEncodeReg4TfChip_ENCFF407QCF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF711CSQ ENCSR658UBE Peak bigBed 5 Left lung tissue female child 16 years DNase peak 4 4439 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/76bac3d9-7449-4f70-8e4d-e0e346e0d52d/ENCFF711CSQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue female child 16 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR658UBE Peak\ track wgEncodeReg4Epigenetics_ENCFF711CSQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF399KAM ENCSR850KIP Peak bigBed 5 H1 ASH2L peaks 4 4439 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/6032bcee-8025-4d08-a88b-1647d70fb871/ENCFF399KAM.bigBed\ labelFields none\ longLabel H1 ASH2L peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR850KIP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF399KAM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF935VSX ENCSR658UBE Signal bigWig Left lung tissue female child 16 years DNase signal 2 4440 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/952133cb-e727-4155-9c6c-db6e39bb3600/ENCFF935VSX.bigWig\ color 6,218,147\ longLabel Left lung tissue female child 16 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR658UBE Signal\ track wgEncodeReg4Epigenetics_ENCFF935VSX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF550NSU ENCSR850KIP Signal bigWig H1 ASH2L ENCSR850KIP signal 2 4440 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/ab8fa071-95d3-4579-a0a3-8735316ec94a/ENCFF550NSU.bigWig\ color 118,158,101\ longLabel H1 ASH2L ENCSR850KIP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR850KIP Signal\ track wgEncodeReg4TfChip_ENCFF550NSU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF642BOA ENCSR659FAS Peak bigBed 5 Chorionic villus tissue female embryo 40 weeks H3K4me3 peak 4 4441 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6ee9fa0e-e2b0-48ac-8014-1f94a8de2476/ENCFF642BOA.bigBed\ color 255,0,0\ longLabel Chorionic villus tissue female embryo 40 weeks H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659FAS Peak\ track wgEncodeReg4Epigenetics_ENCFF642BOA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF320GSD ENCSR851BNE Peak bigBed 5 K562 MEIS2 peaks 4 4441 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/25d6791b-ddd2-4acb-84ea-45755e8398db/ENCFF320GSD.bigBed\ labelFields none\ longLabel K562 MEIS2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR851BNE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF320GSD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF169MHR ENCSR659FAS Signal bigWig Chorionic villus tissue female embryo 40 weeks H3K4me3 signal 2 4442 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8e7febb6-bb5f-44b0-893b-ad6f6c2bd423/ENCFF169MHR.bigWig\ color 255,0,0\ longLabel Chorionic villus tissue female embryo 40 weeks H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659FAS Signal\ track wgEncodeReg4Epigenetics_ENCFF169MHR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF730TBA ENCSR851BNE Signal bigWig K562 MEIS2 ENCSR851BNE signal 2 4442 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/3e41e2c1-ad0d-4f0a-adbd-532a98523f94/ENCFF730TBA.bigWig\ color 254,75,173\ longLabel K562 MEIS2 ENCSR851BNE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR851BNE Signal\ track wgEncodeReg4TfChip_ENCFF730TBA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF613ESS ENCSR659JPP Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue male adult 84 years DNase peak 4 4443 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/ebb13e98-fa15-4ec9-a6dd-45efcf4e2a83/ENCFF613ESS.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659JPP Peak\ track wgEncodeReg4Epigenetics_ENCFF613ESS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF759HAE ENCSR852BLA Peak bigBed 5 Pancreas tissue female child (16 years) CTCF peaks 4 4443 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/14519f7d-180c-498e-83f2-2c23a95cbc0a/ENCFF759HAE.bigBed\ labelFields none\ longLabel Pancreas tissue female child (16 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR852BLA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF759HAE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF851FKA ENCSR659JPP Signal bigWig Mild cognitive impairment head of caudate nucleus tissue male adult 84 years DNase signal 2 4444 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/36869d74-1454-4921-9e6c-b506598c7dd3/ENCFF851FKA.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue male adult 84 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659JPP Signal\ track wgEncodeReg4Epigenetics_ENCFF851FKA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF521NYK ENCSR852BLA Signal bigWig Pancreas tissue female child (16 years) CTCF ENCSR852BLA signal 2 4444 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/4f1314c3-d3e0-4eea-b6f5-1c878a031afc/ENCFF521NYK.bigWig\ color 175,100,41\ longLabel Pancreas tissue female child (16 years) CTCF ENCSR852BLA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR852BLA Signal\ track wgEncodeReg4TfChip_ENCFF521NYK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF525GTX ENCSR659RHV Peak bigBed 5 Large intestine tissue male embryo 108 days H3K27ac peak 4 4445 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/c400d00e-5cc4-4e5d-8fdd-37a42b793d85/ENCFF525GTX.bigBed\ color 181,145,0\ longLabel Large intestine tissue male embryo 108 days H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659RHV Peak\ track wgEncodeReg4Epigenetics_ENCFF525GTX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF694NVY ENCSR853ADA Peak bigBed 5 HepG2 NRF1 peaks 4 4445 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/417a7552-1c10-463b-9ea6-7a31b2188324/ENCFF694NVY.bigBed\ labelFields none\ longLabel HepG2 NRF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR853ADA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF694NVY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF199GYV ENCSR659RHV Signal bigWig Large intestine tissue male embryo 108 days H3K27ac signal 2 4446 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/d6210cbc-bc9e-4cd7-97a4-d771a0c84f0a/ENCFF199GYV.bigWig\ color 181,145,0\ longLabel Large intestine tissue male embryo 108 days H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659RHV Signal\ track wgEncodeReg4Epigenetics_ENCFF199GYV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF815THH ENCSR853ADA Signal bigWig HepG2 NRF1 ENCSR853ADA signal 2 4446 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/78e0685e-e61a-4238-95f5-860e36685faa/ENCFF815THH.bigWig\ color 137,152,82\ longLabel HepG2 NRF1 ENCSR853ADA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR853ADA Signal\ track wgEncodeReg4TfChip_ENCFF815THH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF901OHC ENCSR659SFK Peak bigBed 5 Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours ATAC peak 4 4447 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/4b028023-2fb9-48ca-9004-ee64bf850849/ENCFF901OHC.bigBed\ color 2,199,185\ longLabel Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659SFK Peak\ track wgEncodeReg4Epigenetics_ENCFF901OHC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF249FMX ENCSR854IPI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF707 ZNF707 peaks 4 4447 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/09545553-7020-4636-8f13-989f7f7308d6/ENCFF249FMX.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF707 ZNF707 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR854IPI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF249FMX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF806WFB ENCSR659SFK Signal bigWig Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours ATAC signal 2 4448 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/1e4a3cc2-1832-4107-87a1-aa595f483eee/ENCFF806WFB.bigWig\ color 2,199,185\ longLabel Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR659SFK Signal\ track wgEncodeReg4Epigenetics_ENCFF806WFB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF180AYY ENCSR854IPI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF707 ZNF707 ENCSR854IPI signal 2 4448 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/287f0484-5e39-4987-9978-18b10e9cef6b/ENCFF180AYY.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF707 ZNF707 ENCSR854IPI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR854IPI Signal\ track wgEncodeReg4TfChip_ENCFF180AYY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF083YZF ENCSR660EVU Peak bigBed 5 Naive B cell male adult 40 years H3K27ac peak 4 4449 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/0c256f14-433e-4ebe-9ca4-3677362ac508/ENCFF083YZF.bigBed\ color 181,145,0\ longLabel Naive B cell male adult 40 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR854JES Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF508UTS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF901BFR ENCSR660EVU Signal bigWig Naive B cell male adult 40 years H3K27ac signal 2 4450 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/a3219443-f447-42ef-8d31-b9e27b3a0527/ENCFF901BFR.bigWig\ color 181,145,0\ longLabel Naive B cell male adult 40 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660EVU Signal\ track wgEncodeReg4Epigenetics_ENCFF901BFR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF682STT ENCSR854JES Signal bigWig HepG2 POLR2G ENCSR854JES signal 2 4450 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/0802127b-23bb-4e86-ac42-dc29f81d2b50/ENCFF682STT.bigWig\ color 137,152,82\ longLabel HepG2 POLR2G ENCSR854JES signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR854JES Signal\ track wgEncodeReg4TfChip_ENCFF682STT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF489REG ENCSR660FSU Peak bigBed 5 Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase peak 4 4451 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/db34b09e-abe8-4a7a-8950-57b6d1948d6f/ENCFF489REG.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR854MCV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF277KTJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF731KOK ENCSR660FSU Signal bigWig Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase signal 2 4452 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/33bf3528-36b4-4b99-b317-e41be10a68ef/ENCFF731KOK.bigWig\ color 6,218,147\ longLabel Activated T-cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660FSU Signal\ track wgEncodeReg4Epigenetics_ENCFF731KOK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF843BFO ENCSR854MCV Signal bigWig K562 stably expressing IRF1 IRF1 ENCSR854MCV signal 2 4452 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8da6b2f5-f65e-4b09-afab-7260f3e0f7e1/ENCFF843BFO.bigWig\ color 254,75,173\ longLabel K562 stably expressing IRF1 IRF1 ENCSR854MCV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR854MCV Signal\ track wgEncodeReg4TfChip_ENCFF843BFO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF267ADA ENCSR660IQS Peak bigBed 5 Karpas-422 H3K27ac peak 4 4453 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/3004cf6c-810a-4ab7-8bd6-a7fe435ae942/ENCFF267ADA.bigBed\ color 181,145,0\ longLabel Karpas-422 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660IQS Peak\ track wgEncodeReg4Epigenetics_ENCFF267ADA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF847HIL ENCSR855XFL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB3 CREB3 peaks 4 4453 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/9364cceb-eba1-4623-9c3d-47f8ffdc5974/ENCFF847HIL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB3 CREB3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR855XFL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF847HIL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF192JYE ENCSR660IQS Signal bigWig Karpas-422 H3K27ac signal 2 4454 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/871599ae-da17-4d45-a1a2-dc7b7f0f70f0/ENCFF192JYE.bigWig\ color 181,145,0\ longLabel Karpas-422 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660IQS Signal\ track wgEncodeReg4Epigenetics_ENCFF192JYE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF163YSC ENCSR855XFL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB3 CREB3 ENCSR855XFL signal 2 4454 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/af61bc75-9e99-4ddb-a26b-ed73a9080ebf/ENCFF163YSC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CREB3 CREB3 ENCSR855XFL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR855XFL Signal\ track wgEncodeReg4TfChip_ENCFF163YSC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF276BCP ENCSR660KHZ Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 peak 4 4455 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/6bffb924-0f62-4003-8c95-d082102a4d91/ENCFF276BCP.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660KHZ Peak\ track wgEncodeReg4Epigenetics_ENCFF276BCP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF911IEE ENCSR856JJB Peak bigBed 5 RWPE2 CTCF peaks 4 4455 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/46256039-99e3-4032-8840-4ac54da35194/ENCFF911IEE.bigBed\ labelFields none\ longLabel RWPE2 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR856JJB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF911IEE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF523KXW ENCSR660KHZ Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 signal 2 4456 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/eff1e98f-3359-45e7-985a-f3aff188b91f/ENCFF523KXW.bigWig\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660KHZ Signal\ track wgEncodeReg4Epigenetics_ENCFF523KXW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF508ALM ENCSR856JJB Signal bigWig RWPE2 CTCF ENCSR856JJB signal 2 4456 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/04bc7f55-b919-4f7e-84af-aefb48ad5659/ENCFF508ALM.bigWig\ color 140,140,140\ longLabel RWPE2 CTCF ENCSR856JJB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR856JJB Signal\ track wgEncodeReg4TfChip_ENCFF508ALM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF029UQY ENCSR660WSB Peak bigBed 5 DND-41 ATAC peak 4 4457 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/ffe04048-34c7-4f3c-b1d1-bbe128078841/ENCFF029UQY.bigBed\ color 2,199,185\ longLabel DND-41 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660WSB Peak\ track wgEncodeReg4Epigenetics_ENCFF029UQY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF488TVQ ENCSR856QJP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF775 ZNF775 peaks 4 4457 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/ce902204-1d5d-4bd2-a1c6-bcdfdb09f441/ENCFF488TVQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF775 ZNF775 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR856QJP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF488TVQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF679DXT ENCSR660WSB Signal bigWig DND-41 ATAC signal 2 4458 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/6e8f29a8-ba02-49ae-bb13-d11e50701330/ENCFF679DXT.bigWig\ color 2,199,185\ longLabel DND-41 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR660WSB Signal\ track wgEncodeReg4Epigenetics_ENCFF679DXT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF920TYM ENCSR856QJP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF775 ZNF775 ENCSR856QJP signal 2 4458 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/1bf382aa-8271-4fbc-9c75-795458c81c65/ENCFF920TYM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF775 ZNF775 ENCSR856QJP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR856QJP Signal\ track wgEncodeReg4TfChip_ENCFF920TYM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF678RSF ENCSR661AMM Peak bigBed 5 Middle frontal area 46 tissue female adult 83 years DNase peak 4 4459 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/9604450e-fef2-4500-9246-23fcdbabb8d1/ENCFF678RSF.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661AMM Peak\ track wgEncodeReg4Epigenetics_ENCFF678RSF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF466OXN ENCSR857PBV Peak bigBed 5 22Rv1 CTCF peaks 4 4459 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8d87afd3-dce2-4f25-b1f5-edad950b6dca/ENCFF466OXN.bigBed\ labelFields none\ longLabel 22Rv1 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR857PBV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF466OXN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF813UXN ENCSR661AMM Signal bigWig Middle frontal area 46 tissue female adult 83 years DNase signal 2 4460 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/c13e7089-ca68-4f05-be77-57075bd72b43/ENCFF813UXN.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661AMM Signal\ track wgEncodeReg4Epigenetics_ENCFF813UXN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF101XPW ENCSR857PBV Signal bigWig 22Rv1 CTCF ENCSR857PBV signal 2 4460 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/acee22cc-d2fb-4a7f-8028-54649833a984/ENCFF101XPW.bigWig\ color 140,140,140\ longLabel 22Rv1 CTCF ENCSR857PBV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR857PBV Signal\ track wgEncodeReg4TfChip_ENCFF101XPW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF582WNF ENCSR661KMA Peak bigBed 5 HCT116 H3K27ac peak 4 4461 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/f33a4181-fc28-4f65-9aa0-6a4716ccb910/ENCFF582WNF.bigBed\ color 181,145,0\ longLabel HCT116 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661KMA Peak\ track wgEncodeReg4Epigenetics_ENCFF582WNF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF397ZZF ENCSR857RJQ Peak bigBed 5 Sigmoid colon tissue male adult (54 years) CTCF peaks 4 4461 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/b90f8916-d8fd-4dcc-90e7-07c92345b5bd/ENCFF397ZZF.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR857RJQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF397ZZF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF787LMI ENCSR661KMA Signal bigWig HCT116 H3K27ac signal 2 4462 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/62fc8c63-250e-44e3-80c6-40e3006d99e7/ENCFF787LMI.bigWig\ color 181,145,0\ longLabel HCT116 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661KMA Signal\ track wgEncodeReg4Epigenetics_ENCFF787LMI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF634JUC ENCSR857RJQ Signal bigWig Sigmoid colon tissue male adult (54 years) CTCF ENCSR857RJQ signal 2 4462 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/fa25c248-9b47-440f-a04a-92a142ee60f6/ENCFF634JUC.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (54 years) CTCF ENCSR857RJQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR857RJQ Signal\ track wgEncodeReg4TfChip_ENCFF634JUC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF660PPP ENCSR661MUS Peak bigBed 5 Neural progenitor cell originated from H9 H3K4me3 peak 4 4463 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/efaf9c92-2fae-4f7c-8b4f-c6227be6667a/ENCFF660PPP.bigBed\ color 255,0,0\ longLabel Neural progenitor cell originated from H9 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661MUS Peak\ track wgEncodeReg4Epigenetics_ENCFF660PPP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF159QSW ENCSR859BMR Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF1 KLF1 peaks 4 4463 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/618a908a-a744-49e4-9ffd-f7051efb10c3/ENCFF159QSW.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF1 KLF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR859BMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF159QSW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF835JIA ENCSR661MUS Signal bigWig Neural progenitor cell originated from H9 H3K4me3 signal 2 4464 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/cf47dbcf-8dde-4471-be86-625b66b94c3e/ENCFF835JIA.bigWig\ color 255,0,0\ longLabel Neural progenitor cell originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661MUS Signal\ track wgEncodeReg4Epigenetics_ENCFF835JIA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF719ILH ENCSR859BMR Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF1 KLF1 ENCSR859BMR signal 2 4464 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/0825b439-15bb-4eb8-bff4-41695eb1198b/ENCFF719ILH.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF1 KLF1 ENCSR859BMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR859BMR Signal\ track wgEncodeReg4TfChip_ENCFF719ILH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF080KNR ENCSR661NXJ Peak bigBed 5 Breast epithelium tissue female adult 51 years CTCF peak 4 4465 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/86c4140a-bae5-4cdd-80bd-0e982034236d/ENCFF080KNR.bigBed\ color 0,176,240\ labelFields none\ longLabel Breast epithelium tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661NXJ Peak\ track wgEncodeReg4Epigenetics_ENCFF080KNR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF233SGE ENCSR859FDL Peak bigBed 5 GM12878 ZNF687 peaks 4 4465 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/fcc36468-7575-4eaf-ba92-fc0021cb6992/ENCFF233SGE.bigBed\ labelFields none\ longLabel GM12878 ZNF687 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR859FDL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF233SGE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF271PWB ENCSR661NXJ Signal bigWig Breast epithelium tissue female adult 51 years CTCF signal 2 4466 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8d59aa30-9ef6-41ab-9bd1-03d25169eb02/ENCFF271PWB.bigWig\ color 0,176,240\ longLabel Breast epithelium tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661NXJ Signal\ track wgEncodeReg4Epigenetics_ENCFF271PWB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF371AND ENCSR859FDL Signal bigWig GM12878 ZNF687 ENCSR859FDL signal 2 4466 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/965112dc-1ab6-4016-a9ae-2f07ce7ba98b/ENCFF371AND.bigWig\ color 254,75,173\ longLabel GM12878 ZNF687 ENCSR859FDL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR859FDL Signal\ track wgEncodeReg4TfChip_ENCFF371AND\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF582GAX ENCSR661XNQ Peak bigBed 5 Gastroesophageal sphincter tissue male adult 54 years CTCF peak 4 4467 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d70c8345-50f9-45d1-8e8f-c5b3a92f4ece/ENCFF582GAX.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR859RAO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF734SBY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF922TZX ENCSR661XNQ Signal bigWig Gastroesophageal sphincter tissue male adult 54 years CTCF signal 2 4468 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/5d7072a4-9684-474b-a47d-052cebb8259c/ENCFF922TZX.bigWig\ color 0,176,240\ longLabel Gastroesophageal sphincter tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR661XNQ Signal\ track wgEncodeReg4Epigenetics_ENCFF922TZX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF258PGM ENCSR859RAO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens YY1 YY1 ENCSR859RAO signal 2 4468 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/e827c723-8fc3-4f95-a177-e7ad455c2981/ENCFF258PGM.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens YY1 YY1 ENCSR859RAO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR859RAO Signal\ track wgEncodeReg4TfChip_ENCFF258PGM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF476NPP ENCSR662BVK Peak bigBed 5 Middle frontal area 46 tissue female adult 87 years H3K4me3 peak 4 4469 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/c5804f6d-00cc-43a3-bffe-8fb5dbd24b63/ENCFF476NPP.bigBed\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 87 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR860UHK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF056JUS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF562LUZ ENCSR662BVK Signal bigWig Middle frontal area 46 tissue female adult 87 years H3K4me3 signal 2 4470 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/91c6687c-f435-4899-85c0-d8e1ce40422b/ENCFF562LUZ.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue female adult 87 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR662BVK Signal\ track wgEncodeReg4Epigenetics_ENCFF562LUZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF670LHO ENCSR860UHK Signal bigWig GM12878 CBFB ENCSR860UHK signal 2 4470 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/2f7282a8-638d-4a60-b70f-06277b8fa7fc/ENCFF670LHO.bigWig\ color 254,75,173\ longLabel GM12878 CBFB ENCSR860UHK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR860UHK Signal\ track wgEncodeReg4TfChip_ENCFF670LHO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF528LQK ENCSR662HMO Peak bigBed 5 NAMALWA DNase peak 4 4471 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ab6131dc-acb5-43cd-b7e2-e2d3e2602253/ENCFF528LQK.bigBed\ color 6,218,147\ labelFields none\ longLabel NAMALWA DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR662HMO Peak\ track wgEncodeReg4Epigenetics_ENCFF528LQK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF546FJN ENCSR861JUQ Peak bigBed 5 GM12878 FOXK2 peaks 4 4471 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/0b0580af-1d18-4f4d-80c5-29ad38f96ed0/ENCFF546FJN.bigBed\ labelFields none\ longLabel GM12878 FOXK2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR861JUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF546FJN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF548LNV ENCSR662HMO Signal bigWig NAMALWA DNase signal 2 4472 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/f451f8e2-d1d3-48b4-b226-2a1fcbb26207/ENCFF548LNV.bigWig\ color 6,218,147\ longLabel NAMALWA DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR662HMO Signal\ track wgEncodeReg4Epigenetics_ENCFF548LNV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF083NEJ ENCSR861XGM Peak bigBed 5 Suprapubic skin tissue male adult (54 years) POLR2AphosphoS5 peaks 4 4472 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/fdd7d7cf-2ee4-48e6-a153-6705598c8726/ENCFF083NEJ.bigBed\ labelFields none\ longLabel Suprapubic skin tissue male adult (54 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR662PLB Peak\ track wgEncodeReg4Epigenetics_ENCFF278HVG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF641UEU ENCSR861XGM Signal bigWig Suprapubic skin tissue male adult (54 years) POLR2AphosphoS5 ENCSR861XGM signal 2 4473 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/d1f1b6ec-d314-4f73-8706-19380819d95d/ENCFF641UEU.bigWig\ color 127,133,209\ longLabel Suprapubic skin tissue male adult (54 years) POLR2AphosphoS5 ENCSR861XGM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR861XGM Signal\ track wgEncodeReg4TfChip_ENCFF641UEU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF633ZGH ENCSR662PLB Signal bigWig Neuroepithelial stem cell stably expressing HES5 originated from H9 H3K4me3 signal 2 4474 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/3593e44b-6547-4798-8667-30e7cfb76487/ENCFF633ZGH.bigWig\ color 255,0,0\ longLabel Neuroepithelial stem cell stably expressing HES5 originated from H9 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR662PLB Signal\ track wgEncodeReg4Epigenetics_ENCFF633ZGH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF650TLK ENCSR862LJQ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF296 ZNF296 peaks 4 4474 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/ba5ed3a5-8faa-4c14-a6f4-3beb904ca8fd/ENCFF650TLK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF296 ZNF296 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR862LJQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF650TLK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF058OVJ ENCSR662RIZ Peak bigBed 5 H9 DNase peak 4 4475 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/40b1800f-b78b-483b-9ac9-fcfe570d8b71/ENCFF058OVJ.bigBed\ color 6,218,147\ labelFields none\ longLabel H9 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR662RIZ Peak\ track wgEncodeReg4Epigenetics_ENCFF058OVJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF482NJV ENCSR862PNL Peak bigBed 5 HEK293T L3MBTL2 peaks 4 4475 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/724ba87f-232a-44e2-9872-275689d19cbd/ENCFF482NJV.bigBed\ labelFields none\ longLabel HEK293T L3MBTL2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR862PNL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF482NJV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF903ZCB ENCSR662RIZ Signal bigWig H9 DNase signal 2 4476 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/045e7ddc-6d8b-4f10-a70d-0189bcb5ab4e/ENCFF903ZCB.bigWig\ color 6,218,147\ longLabel H9 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR662RIZ Signal\ track wgEncodeReg4Epigenetics_ENCFF903ZCB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF472YKH ENCSR862PNL Signal bigWig HEK293T L3MBTL2 ENCSR862PNL signal 2 4476 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/ab1740f5-f4a1-415e-8eea-a193a1e26575/ENCFF472YKH.bigWig\ color 92,161,153\ longLabel HEK293T L3MBTL2 ENCSR862PNL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR862PNL Signal\ track wgEncodeReg4TfChip_ENCFF472YKH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF980AXC ENCSR663MNQ Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 4477 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/a65436d6-6d23-4912-90a3-7b0a3bfb660e/ENCFF980AXC.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR663MNQ Peak\ track wgEncodeReg4Epigenetics_ENCFF980AXC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF031XIP ENCSR862VDD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZIK1 ZIK1 peaks 4 4477 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/3cc82257-0bbc-4fb6-a133-a4a6cbd0d93a/ENCFF031XIP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZIK1 ZIK1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR862VDD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF031XIP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF469IVT ENCSR663MNQ Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 4478 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/a82873fd-4a48-4626-a802-f5c9d2aff033/ENCFF469IVT.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR663MNQ Signal\ track wgEncodeReg4Epigenetics_ENCFF469IVT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF686GDU ENCSR862VDD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZIK1 ZIK1 ENCSR862VDD signal 2 4478 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/2d26f731-5004-4b02-8073-95686d8e8b9b/ENCFF686GDU.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZIK1 ZIK1 ENCSR862VDD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR862VDD Signal\ track wgEncodeReg4TfChip_ENCFF686GDU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF312FVP ENCSR664DNR Peak bigBed 5 Osteocyte H3K4me3 peak 4 4479 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/f7676151-d5f8-41c7-be16-aedc5d12d4c7/ENCFF312FVP.bigBed\ color 255,0,0\ longLabel Osteocyte H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR664DNR Peak\ track wgEncodeReg4Epigenetics_ENCFF312FVP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF372PUR ENCSR863KUB Peak bigBed 5 K562 TCF7 peaks 4 4479 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/e08db10f-35ba-4713-b3ca-d91c0baa4539/ENCFF372PUR.bigBed\ labelFields none\ longLabel K562 TCF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR863KUB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF372PUR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF582GHH ENCSR664DNR Signal bigWig Osteocyte H3K4me3 signal 2 4480 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/f7ded80c-a77d-4ee2-8620-751949be2da9/ENCFF582GHH.bigWig\ color 255,0,0\ longLabel Osteocyte H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR664DNR Signal\ track wgEncodeReg4Epigenetics_ENCFF582GHH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF533NFT ENCSR864VJE Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN16 ZSCAN16 peaks 4 4480 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/8c98d7e7-0798-4a3e-b938-0944f7e9e3cd/ENCFF533NFT.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN16 ZSCAN16 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR864VJE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF533NFT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF049IFX ENCSR664PKM Peak bigBed 5 Heart tissue embryo 59 days and female embryo 76 days DNase peak 4 4481 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/573f6d88-0bb9-4a2d-9a8f-f98c7430dc38/ENCFF049IFX.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue embryo 59 days and female embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR664PKM Peak\ track wgEncodeReg4Epigenetics_ENCFF049IFX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF605NBV ENCSR864VJE Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN16 ZSCAN16 ENCSR864VJE signal 2 4481 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/d18e8ac4-22fc-47d6-be90-fd13deb122df/ENCFF605NBV.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZSCAN16 ZSCAN16 ENCSR864VJE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR864VJE Signal\ track wgEncodeReg4TfChip_ENCFF605NBV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF253NOO ENCSR664PKM Signal bigWig Heart tissue embryo 59 days and female embryo 76 days DNase signal 2 4482 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/f720e8c7-05c4-411c-a466-04ca73c8a233/ENCFF253NOO.bigWig\ color 6,218,147\ longLabel Heart tissue embryo 59 days and female embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR664PKM Signal\ track wgEncodeReg4Epigenetics_ENCFF253NOO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF361KNY ENCSR865RXA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA1 FOXA1 peaks 4 4482 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/8ec0bd1d-1976-4a01-95d9-b751005e0804/ENCFF361KNY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA1 FOXA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR865RXA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF361KNY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF154SUH ENCSR665QZU Peak bigBed 5 CD14-positive monocyte H3K4me3 peak 4 4483 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/092afbcf-90e1-4c51-aba0-17d7b08e50a3/ENCFF154SUH.bigBed\ color 255,0,0\ longLabel CD14-positive monocyte H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR665QZU Peak\ track wgEncodeReg4Epigenetics_ENCFF154SUH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF472SVW ENCSR865RXA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA1 FOXA1 ENCSR865RXA signal 2 4483 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/60ec8663-6108-47d4-8252-f2aa06d003e5/ENCFF472SVW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA1 FOXA1 ENCSR865RXA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR865RXA Signal\ track wgEncodeReg4TfChip_ENCFF472SVW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF090HMA ENCSR665QZU Signal bigWig CD14-positive monocyte H3K4me3 signal 2 4484 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3e7810ff-6b9a-41a9-8628-de8bc0b55562/ENCFF090HMA.bigWig\ color 255,0,0\ longLabel CD14-positive monocyte H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR665QZU Signal\ track wgEncodeReg4Epigenetics_ENCFF090HMA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF578WKB ENCSR866QPZ Peak bigBed 5 MCF-7 ATF7 peaks 4 4484 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/07/30141ddc-a11d-4184-aa32-364932677777/ENCFF578WKB.bigBed\ labelFields none\ longLabel MCF-7 ATF7 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR668EVA Peak\ track wgEncodeReg4Epigenetics_ENCFF009GNA\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF544BBF ENCSR869JZW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA5 HOXA5 ENCSR869JZW signal 2 4493 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/345488aa-2160-400a-a932-0e92b2aa3afb/ENCFF544BBF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA5 HOXA5 ENCSR869JZW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR869JZW Signal\ track wgEncodeReg4TfChip_ENCFF544BBF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF791CAJ ENCSR668EVA Signal bigWig Right atrium auricular region tissue female adult 51 years H3K27ac signal 2 4494 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/29bfcfc5-1c1c-4717-b7f3-92132a5cab18/ENCFF791CAJ.bigWig\ color 181,145,0\ longLabel Right atrium auricular region tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR668EVA Signal\ track wgEncodeReg4Epigenetics_ENCFF791CAJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF774VLV ENCSR869RSW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 peaks 4 4494 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/8f0c97ec-0e95-467f-b004-ba1c88e1978b/ENCFF774VLV.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR668GBL Peak\ track wgEncodeReg4Epigenetics_ENCFF708EVD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF164FWL ENCSR869RSW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 ENCSR869RSW signal 2 4495 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/5a90ff66-8de0-49d8-8404-26b393cd36e9/ENCFF164FWL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF766 ZNF766 ENCSR869RSW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR869RSW Signal\ track wgEncodeReg4TfChip_ENCFF164FWL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF502ALL ENCSR668GBL Signal bigWig Spleen tissue female adult 51 years H3K27ac signal 2 4496 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/7d289561-8ee4-4cf8-a358-63621eab8f38/ENCFF502ALL.bigWig\ color 181,145,0\ longLabel Spleen tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR668GBL Signal\ track wgEncodeReg4Epigenetics_ENCFF502ALL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF960API ENCSR870YEN Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN32 ZSCAN32 peaks 4 4496 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/9f442ed5-37f2-481d-a137-14d35c83ca43/ENCFF960API.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN32 ZSCAN32 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR668QQL Peak\ track wgEncodeReg4Epigenetics_ENCFF525DUO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF461CUZ ENCSR870YEN Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN32 ZSCAN32 ENCSR870YEN signal 2 4497 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/6217bd08-3ba3-42e0-8acf-db735cd8f36f/ENCFF461CUZ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN32 ZSCAN32 ENCSR870YEN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR870YEN Signal\ track wgEncodeReg4TfChip_ENCFF461CUZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF507KAZ ENCSR668QQL Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 4498 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/c2c2e4a6-7f92-4dd6-b97b-1cb884df8d40/ENCFF507KAZ.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR668QQL Signal\ track wgEncodeReg4Epigenetics_ENCFF507KAZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF024TCL ENCSR871KYB Peak bigBed 5 GM23338 originated from GM23248 REST peaks 4 4498 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/649d5d2c-bc00-4d53-9b3e-5dd53806326b/ENCFF024TCL.bigBed\ labelFields none\ longLabel GM23338 originated from GM23248 REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR871KYB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF024TCL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF396QHI ENCSR668VCT Peak bigBed 5 Transverse colon tissue male adult 37 years ATAC peak 4 4499 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/9e55d4d1-ca80-4b39-bfca-4d0b0072bbcc/ENCFF396QHI.bigBed\ color 2,199,185\ longLabel Transverse colon tissue male adult 37 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR668VCT Peak\ track wgEncodeReg4Epigenetics_ENCFF396QHI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF225DIC ENCSR871KYB Signal bigWig GM23338 originated from GM23248 REST ENCSR871KYB signal 2 4499 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/aad0ee96-dd99-4fa1-866e-73f260534b41/ENCFF225DIC.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 REST ENCSR871KYB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR871KYB Signal\ track wgEncodeReg4TfChip_ENCFF225DIC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF509NRA ENCSR668VCT Signal bigWig Transverse colon tissue male adult 37 years ATAC signal 2 4500 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/46c02c30-c480-4927-8cb1-3a3d4e51d1ad/ENCFF509NRA.bigWig\ color 2,199,185\ longLabel Transverse colon tissue male adult 37 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR668VCT Signal\ track wgEncodeReg4Epigenetics_ENCFF509NRA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF152GTF ENCSR871MKQ Peak bigBed 5 H9 CTCF peaks 4 4500 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/9016c587-b285-4ebf-b322-a2197c0a12b1/ENCFF152GTF.bigBed\ labelFields none\ longLabel H9 CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR669NQZ Peak\ track wgEncodeReg4Epigenetics_ENCFF065SLN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF963CHU ENCSR871MKQ Signal bigWig H9 CTCF ENCSR871MKQ signal 2 4501 118 158 101 186 206 178 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/0f487d96-8c15-4a64-a34d-32d051003f4a/ENCFF963CHU.bigWig\ color 118,158,101\ longLabel H9 CTCF ENCSR871MKQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR871MKQ Signal\ track wgEncodeReg4TfChip_ENCFF963CHU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF561UGF ENCSR669NQZ Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours DNase signal 2 4502 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/0755e515-d7bb-499b-94a8-a07584ee8d65/ENCFF561UGF.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-7 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR669NQZ Signal\ track wgEncodeReg4Epigenetics_ENCFF561UGF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF445ZEJ ENCSR871TKJ Peak bigBed 5 K562 THRAP3 peaks 4 4502 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/32f397ee-3e84-44dc-9bc4-6bfe27c1cadf/ENCFF445ZEJ.bigBed\ labelFields none\ longLabel K562 THRAP3 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR670MKJ Peak\ track wgEncodeReg4Epigenetics_ENCFF730ZIZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF062VWY ENCSR872EVQ Signal bigWig HepG2 PCBP1 ENCSR872EVQ signal 2 4507 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/b9f40504-846c-4865-b996-d242e5621afc/ENCFF062VWY.bigWig\ color 137,152,82\ longLabel HepG2 PCBP1 ENCSR872EVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR872EVQ Signal\ track wgEncodeReg4TfChip_ENCFF062VWY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF184JSH ENCSR670MKJ Signal bigWig Posterior cingulate gyrus tissue female adult 89 years DNase signal 2 4508 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b5eb2828-3d36-4e2e-9a35-f4fda0e8c6ae/ENCFF184JSH.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR670MKJ Signal\ track wgEncodeReg4Epigenetics_ENCFF184JSH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF105YGO ENCSR872ZHM Peak bigBed 5 HepG2 KDM5A peaks 4 4508 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/17/201e9b47-6953-4c6f-bdd6-3b1ab2d8dc4d/ENCFF105YGO.bigBed\ labelFields none\ longLabel HepG2 KDM5A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR670ZSA Peak\ track wgEncodeReg4Epigenetics_ENCFF574RPZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF678PGU ENCSR875NEW Signal bigWig Tibial nerve tissue female adult (53 years) CTCF ENCSR875NEW signal 2 4513 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/43c27ad4-0c55-4e3b-9998-0c273da92961/ENCFF678PGU.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (53 years) CTCF ENCSR875NEW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR875NEW Signal\ track wgEncodeReg4TfChip_ENCFF678PGU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF721SSW ENCSR670ZSA Signal bigWig Right kidney tissue male embryo 96 days DNase signal 2 4514 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/fb0b9a8d-e571-4f42-b8f9-3b4128fac07f/ENCFF721SSW.bigWig\ color 6,218,147\ longLabel Right kidney tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR670ZSA Signal\ track wgEncodeReg4Epigenetics_ENCFF721SSW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF596XRL ENCSR875PEI Peak bigBed 5 MCF-7 TRIM22 peaks 4 4514 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/52ea1a12-a6f5-4704-808e-a9129f0c4876/ENCFF596XRL.bigBed\ labelFields none\ longLabel MCF-7 TRIM22 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR875PEI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF596XRL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF789FTV ENCSR671XCL Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 4515 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/41e5f4ad-eb7f-4b8a-a486-c4bf8a984ee5/ENCFF789FTV.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR876GXA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF875HLX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF301DSI ENCSR671XCL Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 4516 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e26ebc12-7564-498e-a02d-4989b7f6a929/ENCFF301DSI.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR671XCL Signal\ track wgEncodeReg4Epigenetics_ENCFF301DSI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF792AHT ENCSR876GXA Signal bigWig K562 ZBTB33 ENCSR876GXA signal 2 4516 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/b3e83ef2-7319-41a2-a46d-6f0d94e56cfa/ENCFF792AHT.bigWig\ color 254,75,173\ longLabel K562 ZBTB33 ENCSR876GXA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR876GXA Signal\ track wgEncodeReg4TfChip_ENCFF792AHT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF076XME ENCSR671YPX Peak bigBed 5 Head of caudate nucleus tissue female adult 77 years DNase peak 4 4517 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/424937ef-d158-4308-96dd-5206008e6be1/ENCFF076XME.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 77 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR876UYH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF733XRY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF157NVB ENCSR671YPX Signal bigWig Head of caudate nucleus tissue female adult 77 years DNase signal 2 4518 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/ffa1b2dc-aef7-4e33-b1c0-e5a48710eba2/ENCFF157NVB.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 77 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR671YPX Signal\ track wgEncodeReg4Epigenetics_ENCFF157NVB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF580NQU ENCSR876UYH Signal bigWig MCF-7 ZHX2 ENCSR876UYH signal 2 4518 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/5dd54c08-f26e-4630-9233-eaf277664226/ENCFF580NQU.bigWig\ color 65,171,173\ longLabel MCF-7 ZHX2 ENCSR876UYH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR876UYH Signal\ track wgEncodeReg4TfChip_ENCFF580NQU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF252YKH ENCSR671ZRV Peak bigBed 5 Central memory CD4-positive, alpha-beta T cell male adult 38 years DNase peak 4 4519 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/1ba0e714-bd88-44a3-8755-868d7a458fbf/ENCFF252YKH.bigBed\ color 6,218,147\ labelFields none\ longLabel Central memory CD4-positive, alpha-beta T cell male adult 38 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR877OYD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF947QGB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF131POA ENCSR671ZRV Signal bigWig Central memory CD4-positive, alpha-beta T cell male adult 38 years DNase signal 2 4520 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/7f28b156-db74-4e0b-ae66-6acbdfcd2939/ENCFF131POA.bigWig\ color 6,218,147\ longLabel Central memory CD4-positive, alpha-beta T cell male adult 38 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR671ZRV Signal\ track wgEncodeReg4Epigenetics_ENCFF131POA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF137GXV ENCSR877OYD Signal bigWig Esophagus squamous epithelium tissue female adult (51 years) POLR2A ENCSR877OYD signal 2 4520 159 131 100 207 193 177 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/607a75c6-4ac6-4ff3-9a7e-930c1940140e/ENCFF137GXV.bigWig\ color 159,131,100\ longLabel Esophagus squamous epithelium tissue female adult (51 years) POLR2A ENCSR877OYD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR877OYD Signal\ track wgEncodeReg4TfChip_ENCFF137GXV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF517WHD ENCSR672EWY Peak bigBed 5 HFFc6 DNase peak 4 4521 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/7891057c-ed95-4a7c-960d-45d15f8e632b/ENCFF517WHD.bigBed\ color 6,218,147\ labelFields none\ longLabel HFFc6 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672EWY Peak\ track wgEncodeReg4Epigenetics_ENCFF517WHD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF066JWO ENCSR879KXD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 peaks 4 4521 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/117ce3f1-2323-4f78-8bdb-e46e32d92974/ENCFF066JWO.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR879KXD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF066JWO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF623ZIV ENCSR672EWY Signal bigWig HFFc6 DNase signal 2 4522 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/85e315bb-7aec-4a05-bf56-95c88fd34c7f/ENCFF623ZIV.bigWig\ color 6,218,147\ longLabel HFFc6 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672EWY Signal\ track wgEncodeReg4Epigenetics_ENCFF623ZIV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF715HLA ENCSR879KXD Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 ENCSR879KXD signal 2 4522 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/02/fdd3130f-4de1-4de1-8439-6c9040dcafa1/ENCFF715HLA.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens RAD21 RAD21 ENCSR879KXD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR879KXD Signal\ track wgEncodeReg4TfChip_ENCFF715HLA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF199ZCQ ENCSR672HWL Peak bigBed 5 Common myeloid progenitor, CD34-positive H3K4me3 peak 4 4523 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/af511440-1cb1-406a-b590-d56a7b504ef1/ENCFF199ZCQ.bigBed\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672HWL Peak\ track wgEncodeReg4Epigenetics_ENCFF199ZCQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF017FTI ENCSR880PMU Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCORL LCORL peaks 4 4523 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/1b633ab9-af56-4882-aa1c-31a82f306765/ENCFF017FTI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCORL LCORL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR880PMU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF017FTI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF335ADL ENCSR672HWL Signal bigWig Common myeloid progenitor, CD34-positive H3K4me3 signal 2 4524 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/f642535a-1a47-49d7-abcb-f00d868ad5ec/ENCFF335ADL.bigWig\ color 255,0,0\ longLabel Common myeloid progenitor, CD34-positive H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672HWL Signal\ track wgEncodeReg4Epigenetics_ENCFF335ADL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF150HZS ENCSR880PMU Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCORL LCORL ENCSR880PMU signal 2 4524 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/2a1caac7-8c4e-49fe-be5f-f8c57751047b/ENCFF150HZS.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LCORL LCORL ENCSR880PMU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR880PMU Signal\ track wgEncodeReg4TfChip_ENCFF150HZS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF462XPG ENCSR672MOG Peak bigBed 5 Sciatic nerve tissue female adult 41 years DNase peak 4 4525 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/a72c6a35-9efe-4829-b9ee-a0e6ce4f89cb/ENCFF462XPG.bigBed\ color 6,218,147\ labelFields none\ longLabel Sciatic nerve tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672MOG Peak\ track wgEncodeReg4Epigenetics_ENCFF462XPG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF769GAB ENCSR881YFU Peak bigBed 5 Heart left ventricle tissue male adult (66 years) CTCF peaks 4 4525 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/fbe7f278-a43d-4324-9cfb-d65f4d685d62/ENCFF769GAB.bigBed\ labelFields none\ longLabel Heart left ventricle tissue male adult (66 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR881YFU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF769GAB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF355SGW ENCSR672MOG Signal bigWig Sciatic nerve tissue female adult 41 years DNase signal 2 4526 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/40035943-19c7-488b-9414-1809567c1151/ENCFF355SGW.bigWig\ color 6,218,147\ longLabel Sciatic nerve tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672MOG Signal\ track wgEncodeReg4Epigenetics_ENCFF355SGW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF251ATC ENCSR881YFU Signal bigWig Heart left ventricle tissue male adult (66 years) CTCF ENCSR881YFU signal 2 4526 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/d01286de-28c4-4b3f-978f-196c30a6f27b/ENCFF251ATC.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (66 years) CTCF ENCSR881YFU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR881YFU Signal\ track wgEncodeReg4TfChip_ENCFF251ATC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF048GMB ENCSR672RKZ Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak 4 4527 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/905bfd5c-49fb-4a31-a51e-900ff7a37087/ENCFF048GMB.bigBed\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672RKZ Peak\ track wgEncodeReg4Epigenetics_ENCFF048GMB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF977CBA ENCSR882ERE Peak bigBed 5 K562 ZKSCAN1 peaks 4 4527 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/6d8b06b6-aca6-4452-88da-7a0c582cdd2e/ENCFF977CBA.bigBed\ labelFields none\ longLabel K562 ZKSCAN1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882ERE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF977CBA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF145CKE ENCSR672RKZ Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal 2 4528 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/988510d7-c82c-43b0-9cfb-227d00b4587f/ENCFF145CKE.bigWig\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR672RKZ Signal\ track wgEncodeReg4Epigenetics_ENCFF145CKE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF027OVX ENCSR882ERE Signal bigWig K562 ZKSCAN1 ENCSR882ERE signal 2 4528 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/eedb5160-be88-4d8a-8285-752ea5195107/ENCFF027OVX.bigWig\ color 254,75,173\ longLabel K562 ZKSCAN1 ENCSR882ERE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882ERE Signal\ track wgEncodeReg4TfChip_ENCFF027OVX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF797RTH ENCSR673WZL Peak bigBed 5 LNCAP treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF peak 4 4529 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/65daa797-bdbf-4d7c-8d40-a58710188a6a/ENCFF797RTH.bigBed\ color 0,176,240\ labelFields none\ longLabel LNCAP treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR673WZL Peak\ track wgEncodeReg4Epigenetics_ENCFF797RTH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF019DZX ENCSR882ICT Peak bigBed 5 HEK293T ZNF384 peaks 4 4529 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/41f391d7-2491-40cc-8258-2ddd45d456e4/ENCFF019DZX.bigBed\ labelFields none\ longLabel HEK293T ZNF384 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882ICT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF019DZX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF255VLG ENCSR673WZL Signal bigWig LNCAP treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF signal 2 4530 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/00f7b44f-8388-481e-a321-30ac63654a54/ENCFF255VLG.bigWig\ color 0,176,240\ longLabel LNCAP treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR673WZL Signal\ track wgEncodeReg4Epigenetics_ENCFF255VLG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF681CQH ENCSR882ICT Signal bigWig HEK293T ZNF384 ENCSR882ICT signal 2 4530 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8369c7f2-8fef-43a2-8963-03bf12ee8490/ENCFF681CQH.bigWig\ color 92,161,153\ longLabel HEK293T ZNF384 ENCSR882ICT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882ICT Signal\ track wgEncodeReg4TfChip_ENCFF681CQH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF790NVT ENCSR673ZMQ Peak bigBed 5 HG03025 ATAC peak 4 4531 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/5c40fbae-81dd-4377-abfc-0e18b4043feb/ENCFF790NVT.bigBed\ color 2,199,185\ longLabel HG03025 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR673ZMQ Peak\ track wgEncodeReg4Epigenetics_ENCFF790NVT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF807XLY ENCSR882YYL Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883 ZNF883 peaks 4 4531 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/018d2cb1-1095-4e99-944f-b865067a8705/ENCFF807XLY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883 ZNF883 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882YYL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF807XLY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF834DOX ENCSR673ZMQ Signal bigWig HG03025 ATAC signal 2 4532 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/17ce045d-1244-4938-bf21-ab14865e2d5a/ENCFF834DOX.bigWig\ color 2,199,185\ longLabel HG03025 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR673ZMQ Signal\ track wgEncodeReg4Epigenetics_ENCFF834DOX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF916JVL ENCSR882YYL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883 ZNF883 ENCSR882YYL signal 2 4532 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/30aeb0a3-2960-48d3-bb6f-fbb582211718/ENCFF916JVL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF883 ZNF883 ENCSR882YYL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882YYL Signal\ track wgEncodeReg4TfChip_ENCFF916JVL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF027HIM ENCSR674JIL Peak bigBed 5 CD14-positive monocyte male adult 37 years DNase peak 4 4533 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/11f0afe3-fd84-4a90-8fe9-aee8f7ea3d5d/ENCFF027HIM.bigBed\ color 6,218,147\ labelFields none\ longLabel CD14-positive monocyte male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR674JIL Peak\ track wgEncodeReg4Epigenetics_ENCFF027HIM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF262GZJ ENCSR882ZTS Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB11 ZBTB11 peaks 4 4533 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/fabdcc82-2c3c-4cc9-905c-94f7304a976e/ENCFF262GZJ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB11 ZBTB11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882ZTS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF262GZJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF123VGW ENCSR674JIL Signal bigWig CD14-positive monocyte male adult 37 years DNase signal 2 4534 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/cf1656db-44aa-4f52-91c9-4df343023067/ENCFF123VGW.bigWig\ color 6,218,147\ longLabel CD14-positive monocyte male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR674JIL Signal\ track wgEncodeReg4Epigenetics_ENCFF123VGW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF899UXF ENCSR882ZTS Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB11 ZBTB11 ENCSR882ZTS signal 2 4534 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/4d08ea14-d010-4927-86a0-187522e785a6/ENCFF899UXF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB11 ZBTB11 ENCSR882ZTS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR882ZTS Signal\ track wgEncodeReg4TfChip_ENCFF899UXF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF530NQD ENCSR674VPA Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak 4 4535 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/49bf3fc1-3554-47b5-95a5-cb2535f028d5/ENCFF530NQD.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR674VPA Peak\ track wgEncodeReg4Epigenetics_ENCFF530NQD\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF939SEG ENCSR883UGG Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF445 ZNF445 peaks 4 4535 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b4bd9537-581a-4be6-9395-78d2d990edfd/ENCFF939SEG.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF445 ZNF445 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR883UGG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF939SEG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF902LSI ENCSR674VPA Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal 2 4536 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/7a8aeaf7-5755-4c3c-b198-a1b6f0db3b75/ENCFF902LSI.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR674VPA Signal\ track wgEncodeReg4Epigenetics_ENCFF902LSI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF251HZK ENCSR883UGG Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF445 ZNF445 ENCSR883UGG signal 2 4536 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/87eff1b5-c9ac-46d1-95bc-3b890973d04e/ENCFF251HZK.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF445 ZNF445 ENCSR883UGG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR883UGG Signal\ track wgEncodeReg4TfChip_ENCFF251HZK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF742CGW ENCSR676GAW Peak bigBed 5 Activated gamma-delta T cell female adult 33 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak 4 4537 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/b71acfdf-abeb-4f6a-9c6f-f4f8db64a43f/ENCFF742CGW.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated gamma-delta T cell female adult 33 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR886RYH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF268WFF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF345GCX ENCSR676LDQ Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 4540 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/e284778c-5498-487a-907a-ef840d31a539/ENCFF345GCX.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR676LDQ Signal\ track wgEncodeReg4Epigenetics_ENCFF345GCX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF416WMT ENCSR886RYH Signal bigWig K562 NONO ENCSR886RYH signal 2 4540 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1f425c44-6f19-458e-ad06-b187d8503f47/ENCFF416WMT.bigWig\ color 254,75,173\ longLabel K562 NONO ENCSR886RYH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR886RYH Signal\ track wgEncodeReg4TfChip_ENCFF416WMT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF858TAY ENCSR676UFY Peak bigBed 5 K562 treated with 5 μM C646 for 48 hours ATAC peak 4 4541 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/8c2268bb-ccbf-45fb-9889-2fca75e5085c/ENCFF858TAY.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM C646 for 48 hours ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR886VSY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF298FFZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF477WGG ENCSR676UFY Signal bigWig K562 treated with 5 μM C646 for 48 hours ATAC signal 2 4542 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/42a0cd2c-70ba-48e7-bd7a-3a48689889e5/ENCFF477WGG.bigWig\ color 2,199,185\ longLabel K562 treated with 5 μM C646 for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR676UFY Signal\ track wgEncodeReg4Epigenetics_ENCFF477WGG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF304GKK ENCSR886VSY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224 ZNF224 ENCSR886VSY signal 2 4542 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/e67faeb1-a974-4629-aede-a94588ecd563/ENCFF304GKK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF224 ZNF224 ENCSR886VSY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR886VSY Signal\ track wgEncodeReg4TfChip_ENCFF304GKK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF678NWH ENCSR677LBH Peak bigBed 5 Gastroesophageal sphincter tissue female adult 53 years H3K27ac peak 4 4543 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/69e6c15b-a483-496d-83d2-30bd48e70388/ENCFF678NWH.bigBed\ color 181,145,0\ longLabel Gastroesophageal sphincter tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR886YJI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF206MMY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF980XLA ENCSR677LBH Signal bigWig Gastroesophageal sphincter tissue female adult 53 years H3K27ac signal 2 4544 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/87b22287-9cc5-4ef6-8ffb-ba781d845224/ENCFF980XLA.bigWig\ color 181,145,0\ longLabel Gastroesophageal sphincter tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR677LBH Signal\ track wgEncodeReg4Epigenetics_ENCFF980XLA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF458UUH ENCSR886YJI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF574 ZNF574 ENCSR886YJI signal 2 4544 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/7bbea5f1-0b64-4c44-80a2-ae4b37692b2f/ENCFF458UUH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF574 ZNF574 ENCSR886YJI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR886YJI Signal\ track wgEncodeReg4TfChip_ENCFF458UUH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF803LWI ENCSR677MOE Peak bigBed 5 Tibial nerve tissue female adult 51 years H3K4me3 peak 4 4545 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/fe83f160-a8d7-4fd9-9e6b-a325ee147cc3/ENCFF803LWI.bigBed\ color 255,0,0\ longLabel Tibial nerve tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR677MOE Peak\ track wgEncodeReg4Epigenetics_ENCFF803LWI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF035SWK ENCSR887MXT Peak bigBed 5 HeLa-S3 ZHX1 peaks 4 4545 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/7ec7a239-568c-41de-a1b7-965461c64c6a/ENCFF035SWK.bigBed\ labelFields none\ longLabel HeLa-S3 ZHX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR887MXT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF035SWK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF958TLM ENCSR677MOE Signal bigWig Tibial nerve tissue female adult 51 years H3K4me3 signal 2 4546 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/7b010e1e-1d6e-4f10-a91f-3e9ede9937ab/ENCFF958TLM.bigWig\ color 255,0,0\ longLabel Tibial nerve tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR677MOE Signal\ track wgEncodeReg4Epigenetics_ENCFF958TLM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF626LAD ENCSR887MXT Signal bigWig HeLa-S3 ZHX1 ENCSR887MXT signal 2 4546 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/fbaa8773-a25e-46d8-ab8e-27d7a33e5c49/ENCFF626LAD.bigWig\ color 186,111,165\ longLabel HeLa-S3 ZHX1 ENCSR887MXT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR887MXT Signal\ track wgEncodeReg4TfChip_ENCFF626LAD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF776NNG ENCSR677XGD Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue male adult 89 years DNase peak 4 4547 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/4ddc1827-8cce-49c6-93d5-be40d4c9c57c/ENCFF776NNG.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue male adult 89 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR677XGD Peak\ track wgEncodeReg4Epigenetics_ENCFF776NNG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF730PBL ENCSR887TWV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF5 ATF5 peaks 4 4547 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/d2b14a71-3bca-480f-8253-f3e86e8da33d/ENCFF730PBL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF5 ATF5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR887TWV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF730PBL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF784EMF ENCSR677XGD Signal bigWig Mild cognitive impairment head of caudate nucleus tissue male adult 89 years DNase signal 2 4548 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/9368320b-52f8-4134-919c-6660e30eb22f/ENCFF784EMF.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue male adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR677XGD Signal\ track wgEncodeReg4Epigenetics_ENCFF784EMF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF408ZCM ENCSR887TWV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF5 ATF5 ENCSR887TWV signal 2 4548 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/53f56aeb-e3a3-4d99-ac7a-71b73817464f/ENCFF408ZCM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ATF5 ATF5 ENCSR887TWV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR887TWV Signal\ track wgEncodeReg4TfChip_ENCFF408ZCM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF233EKM ENCSR677ZIJ Peak bigBed 5 CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years H3K27ac peak 4 4549 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/40b7eed2-0470-488d-8413-0d2baec96f14/ENCFF233EKM.bigBed\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR888OWU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF603FIH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF406WIO ENCSR677ZIJ Signal bigWig CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years H3K27ac signal 2 4550 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/a3854dfa-b2ba-46db-ac4c-81fb16195fb4/ENCFF406WIO.bigWig\ color 181,145,0\ longLabel CD4-positive, CD25-positive, alpha-beta regulatory T cell male adult 42 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR677ZIJ Signal\ track wgEncodeReg4Epigenetics_ENCFF406WIO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF686QLD ENCSR888OWU Signal bigWig Upper lobe of left lung tissue female adult (51 years) POLR2A ENCSR888OWU signal 2 4550 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/b6cf1d5e-0728-4b54-be25-e07ecaceb363/ENCFF686QLD.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (51 years) POLR2A ENCSR888OWU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR888OWU Signal\ track wgEncodeReg4TfChip_ENCFF686QLD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF959ZNW ENCSR678ILN Peak bigBed 5 ELF-1 DNase peak 4 4551 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/d115c925-0abf-4bff-ad43-395e6fcc48b7/ENCFF959ZNW.bigBed\ color 6,218,147\ labelFields none\ longLabel ELF-1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR678ILN Peak\ track wgEncodeReg4Epigenetics_ENCFF959ZNW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF543OSB ENCSR888XZK Peak bigBed 5 K562 TCF7L2 peaks 4 4551 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ace42e72-c184-40be-b954-aea222e3a70e/ENCFF543OSB.bigBed\ labelFields none\ longLabel K562 TCF7L2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR888XZK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF543OSB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF103BBE ENCSR678ILN Signal bigWig ELF-1 DNase signal 2 4552 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/9fa91b69-fd3f-47cc-a95c-7888aed0d6ec/ENCFF103BBE.bigWig\ color 6,218,147\ longLabel ELF-1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR678ILN Signal\ track wgEncodeReg4Epigenetics_ENCFF103BBE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF883YDF ENCSR888XZK Signal bigWig K562 TCF7L2 ENCSR888XZK signal 2 4552 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/8d59242a-759c-4467-a87a-1df1582b0ec0/ENCFF883YDF.bigWig\ color 254,75,173\ longLabel K562 TCF7L2 ENCSR888XZK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR888XZK Signal\ track wgEncodeReg4TfChip_ENCFF883YDF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF412QJP ENCSR678LND Peak bigBed 5 Liver tissue female adult 25 years H3K27ac peak 4 4553 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e2844bf2-5ea1-4b7d-91cd-203150a22677/ENCFF412QJP.bigBed\ color 181,145,0\ longLabel Liver tissue female adult 25 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR891KPP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF472KAQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF970MLX ENCSR679EFH Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal 2 4558 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/56b1c342-1951-4aea-8393-da46c652152c/ENCFF970MLX.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR679EFH Signal\ track wgEncodeReg4Epigenetics_ENCFF970MLX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF148WZB ENCSR891KPP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF865 ZNF865 ENCSR891KPP signal 2 4558 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/02/231aae26-c75c-41bf-8b1e-352aa96baaff/ENCFF148WZB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF865 ZNF865 ENCSR891KPP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR891KPP Signal\ track wgEncodeReg4TfChip_ENCFF148WZB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF148OGD ENCSR679IFH Peak bigBed 5 Spleen tissue embryo 112 days DNase peak 4 4559 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/12f04748-d9b7-4c83-907c-a66d6658624d/ENCFF148OGD.bigBed\ color 6,218,147\ labelFields none\ longLabel Spleen tissue embryo 112 days DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR892DRK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF148AIS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF884LDL ENCSR679IFH Signal bigWig Spleen tissue embryo 112 days DNase signal 2 4560 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/425880b6-b323-4ee2-95ce-56bdd088d126/ENCFF884LDL.bigWig\ color 6,218,147\ longLabel Spleen tissue embryo 112 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR679IFH Signal\ track wgEncodeReg4Epigenetics_ENCFF884LDL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF720KUQ ENCSR892DRK Signal bigWig A549 REST ENCSR892DRK signal 2 4560 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/6b376817-f19e-485e-a22f-0c12f9a5c3a0/ENCFF720KUQ.bigWig\ color 130,163,45\ longLabel A549 REST ENCSR892DRK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR892DRK Signal\ track wgEncodeReg4TfChip_ENCFF720KUQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF470UCK ENCSR679OVD Peak bigBed 5 Esophagus tissue male adult 34 years H3K27ac peak 4 4561 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/ecc82009-417d-49ec-a797-6d0dcdb705e6/ENCFF470UCK.bigBed\ color 181,145,0\ longLabel Esophagus tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR892QHR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF283AJL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF153OFF ENCSR679OVD Signal bigWig Esophagus tissue male adult 34 years H3K27ac signal 2 4562 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f5ebc8cc-95eb-4afb-9b04-545c4fd7ee02/ENCFF153OFF.bigWig\ color 181,145,0\ longLabel Esophagus tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR679OVD Signal\ track wgEncodeReg4Epigenetics_ENCFF153OFF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF711YQN ENCSR892QHR Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM6 PRDM6 ENCSR892QHR signal 2 4562 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/5d4a3d2a-3176-4da2-9e91-0a9b096cbeaf/ENCFF711YQN.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PRDM6 PRDM6 ENCSR892QHR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR892QHR Signal\ track wgEncodeReg4TfChip_ENCFF711YQN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF320AMH ENCSR680IWU Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak 4 4563 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/4bb5b1ac-b93c-4afc-9859-69c94d35c4cf/ENCFF320AMH.bigBed\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680IWU Peak\ track wgEncodeReg4Epigenetics_ENCFF320AMH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF251YQZ ENCSR892RCP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBX5 CBX5 peaks 4 4563 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/cc56cf72-9c29-41fc-915f-e87f24d74360/ENCFF251YQZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CBX5 CBX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR892RCP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF251YQZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF843YIN ENCSR680IWU Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal 2 4564 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/40514f7d-881f-4b77-af50-734e7a12b3b7/ENCFF843YIN.bigWig\ color 181,145,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680IWU Signal\ track wgEncodeReg4Epigenetics_ENCFF843YIN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF762PDF ENCSR892ZTO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF548 ZNF548 peaks 4 4564 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/b659ca39-8c84-4f67-9d8a-f6b496b93de7/ENCFF762PDF.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF548 ZNF548 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR892ZTO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF762PDF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF093LLG ENCSR680SDS Peak bigBed 5 Left lung tissue female embryo 107 days DNase peak 4 4565 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/a2bc79e7-8ed6-43c9-95f2-93d581c0cc43/ENCFF093LLG.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue female embryo 107 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680SDS Peak\ track wgEncodeReg4Epigenetics_ENCFF093LLG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF844JSO ENCSR892ZTO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF548 ZNF548 ENCSR892ZTO signal 2 4565 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/eb5b4d06-0ee9-4008-bb2d-f85fc81c115d/ENCFF844JSO.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF548 ZNF548 ENCSR892ZTO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR892ZTO Signal\ track wgEncodeReg4TfChip_ENCFF844JSO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF286GRJ ENCSR680SDS Signal bigWig Left lung tissue female embryo 107 days DNase signal 2 4566 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/fd6e630d-1ebc-4fed-8c84-4814471ea3db/ENCFF286GRJ.bigWig\ color 6,218,147\ longLabel Left lung tissue female embryo 107 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680SDS Signal\ track wgEncodeReg4Epigenetics_ENCFF286GRJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF199JUI ENCSR893MYW Peak bigBed 5 Upper lobe of left lung tissue female adult (51 years) POLR2AphosphoS5 peaks 4 4566 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/4ca7368b-fd4d-422e-9d93-e9131c3a906f/ENCFF199JUI.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (51 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR893MYW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF199JUI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF338KEP ENCSR680WMF Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 4567 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/c08c189b-f96f-474f-b937-cd57af9d281a/ENCFF338KEP.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680WMF Peak\ track wgEncodeReg4Epigenetics_ENCFF338KEP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF166RSF ENCSR893MYW Signal bigWig Upper lobe of left lung tissue female adult (51 years) POLR2AphosphoS5 ENCSR893MYW signal 2 4567 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/885c312c-acba-4513-b3d8-46a82052211b/ENCFF166RSF.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (51 years) POLR2AphosphoS5 ENCSR893MYW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR893MYW Signal\ track wgEncodeReg4TfChip_ENCFF166RSF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF264VOP ENCSR680WMF Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 4568 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/d258a981-c0fd-4ad0-9513-7027b174f5a1/ENCFF264VOP.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680WMF Signal\ track wgEncodeReg4Epigenetics_ENCFF264VOP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF577AZT ENCSR893QWP Peak bigBed 5 Liver tissue female child (4 years) REST peaks 4 4568 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/dc920351-6469-42a3-bcfe-cf3c1faeba33/ENCFF577AZT.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) REST peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR893QWP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF577AZT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF621XBW ENCSR680XOP Peak bigBed 5 K562 treated with 0.5 μM MB-3 for 4 hours ATAC peak 4 4569 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/68666ce9-478c-45c7-b6fd-843e2fd6e60c/ENCFF621XBW.bigBed\ color 2,199,185\ longLabel K562 treated with 0.5 μM MB-3 for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680XOP Peak\ track wgEncodeReg4Epigenetics_ENCFF621XBW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF612TBU ENCSR893QWP Signal bigWig Liver tissue female child (4 years) REST ENCSR893QWP signal 2 4569 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/ba8b4e69-495c-4eab-8e51-ed98d4ca8cb7/ENCFF612TBU.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) REST ENCSR893QWP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR893QWP Signal\ track wgEncodeReg4TfChip_ENCFF612TBU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF210AIT ENCSR680XOP Signal bigWig K562 treated with 0.5 μM MB-3 for 4 hours ATAC signal 2 4570 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/4355fcb4-b10f-487b-859e-d4a2421fd6cb/ENCFF210AIT.bigWig\ color 2,199,185\ longLabel K562 treated with 0.5 μM MB-3 for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR680XOP Signal\ track wgEncodeReg4Epigenetics_ENCFF210AIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF744ALD ENCSR893WSB Peak bigBed 5 K562 HDAC2 peaks 4 4570 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/d94f837d-0876-4684-a6d7-1bf7629278b5/ENCFF744ALD.bigBed\ labelFields none\ longLabel K562 HDAC2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR682SDS Peak\ track wgEncodeReg4Epigenetics_ENCFF442FQJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF258BHC ENCSR896UBV Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REST REST ENCSR896UBV signal 2 4579 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/d8cb6507-3115-4d0d-a022-9131f7ece896/ENCFF258BHC.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REST REST ENCSR896UBV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR896UBV Signal\ track wgEncodeReg4TfChip_ENCFF258BHC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF019OYK ENCSR682SDS Signal bigWig Nephron progenitor cell, 8 days post differentiation H3K4me3 signal 2 4580 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/bd6a4fbe-f9b1-4560-9307-c3c964c619be/ENCFF019OYK.bigWig\ color 255,0,0\ longLabel Nephron progenitor cell, 8 days post differentiation H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR682SDS Signal\ track wgEncodeReg4Epigenetics_ENCFF019OYK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF867SAS ENCSR897JAS Peak bigBed 5 MCF-7 CREB1 peaks 4 4580 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/cbfe3eb5-30be-4977-b7a8-edd4d6e75efb/ENCFF867SAS.bigBed\ labelFields none\ longLabel MCF-7 CREB1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR682ZZT Peak\ track wgEncodeReg4Epigenetics_ENCFF503ZPH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF607RWX ENCSR897JAS Signal bigWig MCF-7 CREB1 ENCSR897JAS signal 2 4581 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/eb547ec7-4273-4fa1-a94f-1849928723bb/ENCFF607RWX.bigWig\ color 65,171,173\ longLabel MCF-7 CREB1 ENCSR897JAS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR897JAS Signal\ track wgEncodeReg4TfChip_ENCFF607RWX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF648JOD ENCSR682ZZT Signal bigWig Head of caudate nucleus tissue female adult 83 years DNase signal 2 4582 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/96e7e84c-cd78-482a-932f-5889fe34fa97/ENCFF648JOD.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR682ZZT Signal\ track wgEncodeReg4Epigenetics_ENCFF648JOD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF905PYM ENCSR897LDT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 peaks 4 4582 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/a2ddfeb0-9fa2-4392-b414-fb62863424e9/ENCFF905PYM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR683QJJ Peak\ track wgEncodeReg4Epigenetics_ENCFF965JXN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF526QYQ ENCSR897LDT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 ENCSR897LDT signal 2 4583 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2724d6f4-1635-4ddc-99c0-ad3381f33532/ENCFF526QYQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GATA2 GATA2 ENCSR897LDT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR897LDT Signal\ track wgEncodeReg4TfChip_ENCFF526QYQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF363IZB ENCSR683QJJ Signal bigWig CD4-positive, alpha-beta T cell male adult 21 years DNase signal 2 4584 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/e7fe77c3-2836-439e-8fef-08fa92ec630a/ENCFF363IZB.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell male adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR683QJJ Signal\ track wgEncodeReg4Epigenetics_ENCFF363IZB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF667EJQ ENCSR897MMC Peak bigBed 5 GM12878 JUNB peaks 4 4584 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/cf33927c-c7a7-4265-9875-6c3fb09c80ea/ENCFF667EJQ.bigBed\ labelFields none\ longLabel GM12878 JUNB peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR898XMH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF501CDP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF827PXJ ENCSR683YLO Signal bigWig Stomach tissue female embryo 96 days DNase signal 2 4588 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/ea79180c-91c1-4e2e-a1ac-5779261a1e47/ENCFF827PXJ.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR683YLO Signal\ track wgEncodeReg4Epigenetics_ENCFF827PXJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF263UCJ ENCSR898XMH Signal bigWig K562 ZFP91 ENCSR898XMH signal 2 4588 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1bc9e64d-de85-40eb-bae7-1ae256fc321d/ENCFF263UCJ.bigWig\ color 254,75,173\ longLabel K562 ZFP91 ENCSR898XMH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR898XMH Signal\ track wgEncodeReg4TfChip_ENCFF263UCJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF147WZD ENCSR684EPX Peak bigBed 5 Peyer's patch tissue female adult 51 years H3K4me3 peak 4 4589 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/224eb7aa-ba7b-45e6-b871-d4a134698c5a/ENCFF147WZD.bigBed\ color 255,0,0\ longLabel Peyer's patch tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR899JSO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF596QXB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF697SJL ENCSR684GKG Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years H3K27ac signal 2 4592 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/9f8524c9-4b54-46a4-ab12-1c5da193f558/ENCFF697SJL.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 36 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR684GKG Signal\ track wgEncodeReg4Epigenetics_ENCFF697SJL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF804PBU ENCSR899JSO Signal bigWig Adrenal gland tissue male adult (37 years) CTCF ENCSR899JSO signal 2 4592 90 179 68 172 217 161 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/dcdb5197-07b0-44c0-8b50-5f5a72168492/ENCFF804PBU.bigWig\ color 90,179,68\ longLabel Adrenal gland tissue male adult (37 years) CTCF ENCSR899JSO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR899JSO Signal\ track wgEncodeReg4TfChip_ENCFF804PBU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF767DJU ENCSR684HLM Peak bigBed 5 Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac peak 4 4593 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/20cb4d71-7e06-42a4-b967-e0731b14b111/ENCFF767DJU.bigBed\ color 181,145,0\ longLabel Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR900XDB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF234WRG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF672SYY ENCSR684HLM Signal bigWig Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac signal 2 4594 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/0b9ea874-c26c-4eaf-8cb0-5001c7ebdf03/ENCFF672SYY.bigWig\ color 181,145,0\ longLabel Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR684HLM Signal\ track wgEncodeReg4Epigenetics_ENCFF672SYY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF810RXW ENCSR900XDB Signal bigWig GM12878 ZFP36 ENCSR900XDB signal 2 4594 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/63ee3bba-f965-435d-80da-82367bb090f2/ENCFF810RXW.bigWig\ color 254,75,173\ longLabel GM12878 ZFP36 ENCSR900XDB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR900XDB Signal\ track wgEncodeReg4TfChip_ENCFF810RXW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF293DFO ENCSR684KUG Peak bigBed 5 GM18870 ATAC peak 4 4595 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/dd56703b-ab5c-4081-a1ed-96c7f68866c5/ENCFF293DFO.bigBed\ color 2,199,185\ longLabel GM18870 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR684KUG Peak\ track wgEncodeReg4Epigenetics_ENCFF293DFO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF492KHV ENCSR901NIN Peak bigBed 5 Progenitor cell of endocrine pancreas CTCF peaks 4 4595 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/11c1bd7e-ef9a-4b86-968a-b62c86f0eae7/ENCFF492KHV.bigBed\ labelFields none\ longLabel Progenitor cell of endocrine pancreas CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR901NIN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF492KHV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF946GAJ ENCSR684KUG Signal bigWig GM18870 ATAC signal 2 4596 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/22/43a6ca14-d106-48dd-8569-39baf377b35c/ENCFF946GAJ.bigWig\ color 2,199,185\ longLabel GM18870 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR684KUG Signal\ track wgEncodeReg4Epigenetics_ENCFF946GAJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF559SRW ENCSR901NIN Signal bigWig Progenitor cell of endocrine pancreas CTCF ENCSR901NIN signal 2 4596 175 100 41 215 177 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/6140a268-5249-4f0b-964d-9a118e9b3e3a/ENCFF559SRW.bigWig\ color 175,100,41\ longLabel Progenitor cell of endocrine pancreas CTCF ENCSR901NIN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR901NIN Signal\ track wgEncodeReg4TfChip_ENCFF559SRW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF837OEY ENCSR684PGO Peak bigBed 5 Uterus tissue female adult 53 years CTCF peak 4 4597 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/c47bf361-276e-4938-9ce4-ecb195463acd/ENCFF837OEY.bigBed\ color 0,176,240\ labelFields none\ longLabel Uterus tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR684PGO Peak\ track wgEncodeReg4Epigenetics_ENCFF837OEY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF153UUK ENCSR902SBX Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGZ POGZ peaks 4 4597 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/bf886105-29cd-4d93-aba3-11793df74fc4/ENCFF153UUK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGZ POGZ peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR902SBX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF153UUK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF700PHX ENCSR684PGO Signal bigWig Uterus tissue female adult 53 years CTCF signal 2 4598 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/d3e47f8b-ead6-4624-838d-9e8b24868494/ENCFF700PHX.bigWig\ color 0,176,240\ longLabel Uterus tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR684PGO Signal\ track wgEncodeReg4Epigenetics_ENCFF700PHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF475LZZ ENCSR902SBX Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGZ POGZ ENCSR902SBX signal 2 4598 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/a819399b-9a3b-448a-a8e0-5b428f3f7917/ENCFF475LZZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens POGZ POGZ ENCSR902SBX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR902SBX Signal\ track wgEncodeReg4TfChip_ENCFF475LZZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF994BKU ENCSR685BBN Peak bigBed 5 CD14-positive monocyte H3K27ac peak 4 4599 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/4131b91a-0431-4e15-b3db-51a82691d68b/ENCFF994BKU.bigBed\ color 181,145,0\ longLabel CD14-positive monocyte H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685BBN Peak\ track wgEncodeReg4Epigenetics_ENCFF994BKU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF049UDY ENCSR903ELW Peak bigBed 5 HepG2 CREM peaks 4 4599 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/6309b66f-c2ca-4d22-ad58-bae91712c3bc/ENCFF049UDY.bigBed\ labelFields none\ longLabel HepG2 CREM peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR903ELW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF049UDY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF523ZCA ENCSR685BBN Signal bigWig CD14-positive monocyte H3K27ac signal 2 4600 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/dd471fb8-c4ae-4132-9852-dfc6e62df5a8/ENCFF523ZCA.bigWig\ color 181,145,0\ longLabel CD14-positive monocyte H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685BBN Signal\ track wgEncodeReg4Epigenetics_ENCFF523ZCA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070ENN ENCSR903ELW Signal bigWig HepG2 CREM ENCSR903ELW signal 2 4600 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/3f329e63-0111-4a39-9738-6a7191c5ce1f/ENCFF070ENN.bigWig\ color 137,152,82\ longLabel HepG2 CREM ENCSR903ELW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR903ELW Signal\ track wgEncodeReg4TfChip_ENCFF070ENN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF544RPM ENCSR685HSP Peak bigBed 5 Neural crest cell H3K27ac peak 4 4601 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/c6f6960b-14c1-4c52-9140-52bfb1a560f5/ENCFF544RPM.bigBed\ color 181,145,0\ longLabel Neural crest cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685HSP Peak\ track wgEncodeReg4Epigenetics_ENCFF544RPM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF640NFJ ENCSR903JFF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605 ZNF605 peaks 4 4601 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/b673359e-5f0c-4dff-b376-df2c8a896b87/ENCFF640NFJ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605 ZNF605 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR903JFF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF640NFJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF346DEM ENCSR685HSP Signal bigWig Neural crest cell H3K27ac signal 2 4602 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/15/1e21782d-5a0d-44ca-ac5e-ac00e650f509/ENCFF346DEM.bigWig\ color 181,145,0\ longLabel Neural crest cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685HSP Signal\ track wgEncodeReg4Epigenetics_ENCFF346DEM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF370EDC ENCSR903JFF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605 ZNF605 ENCSR903JFF signal 2 4602 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/ab8fe816-20e1-413a-ae1e-c11414ecc677/ENCFF370EDC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF605 ZNF605 ENCSR903JFF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR903JFF Signal\ track wgEncodeReg4TfChip_ENCFF370EDC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF727VJX ENCSR685JSL Peak bigBed 5 MCF 10A H3K27ac peak 4 4603 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/e0671563-710d-428d-a5c7-e71e7e5406eb/ENCFF727VJX.bigBed\ color 181,145,0\ longLabel MCF 10A H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685JSL Peak\ track wgEncodeReg4Epigenetics_ENCFF727VJX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF453CES ENCSR903MVU Peak bigBed 5 GM12878 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ MAZ peaks 4 4603 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/05/14/8493ab33-07bb-4f1a-8cab-5bb375e7fe25/ENCFF453CES.bigBed\ labelFields none\ longLabel GM12878 genetically modified (insertion) using CRISPR targeting H. sapiens MAZ MAZ peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR904JEY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF739BBD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF632AAY ENCSR685KZA Signal bigWig Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours H3K27ac signal 2 4606 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/67a26d97-d2d6-47b5-aa4b-a5da0549f86f/ENCFF632AAY.bigWig\ color 181,145,0\ longLabel Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685KZA Signal\ track wgEncodeReg4Epigenetics_ENCFF632AAY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF477CLA ENCSR904JEY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF34 ZNF34 ENCSR904JEY signal 2 4606 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/95b5981f-f5db-49a9-a202-b7fd29606a90/ENCFF477CLA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF34 ZNF34 ENCSR904JEY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR904JEY Signal\ track wgEncodeReg4TfChip_ENCFF477CLA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF971AID ENCSR685OFR Peak bigBed 5 Naive B cell female adult 39 years ATAC peak 4 4607 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/3e42ea03-758c-4826-95f1-288c3927c2ae/ENCFF971AID.bigBed\ color 2,199,185\ longLabel Naive B cell female adult 39 years ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR904RIA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF440XFJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF577KRZ ENCSR685OFR Signal bigWig Naive B cell female adult 39 years ATAC signal 2 4608 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/68398271-6894-47a0-8ffa-40f0b5b522e8/ENCFF577KRZ.bigWig\ color 2,199,185\ longLabel Naive B cell female adult 39 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685OFR Signal\ track wgEncodeReg4Epigenetics_ENCFF577KRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF310JID ENCSR904RIA Signal bigWig Heart left ventricle tissue male adult (61 years) CTCF ENCSR904RIA signal 2 4608 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/76f97470-87e2-4ab4-9d81-12d76fa2b0f7/ENCFF310JID.bigWig\ color 116,50,165\ longLabel Heart left ventricle tissue male adult (61 years) CTCF ENCSR904RIA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR904RIA Signal\ track wgEncodeReg4TfChip_ENCFF310JID\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF176IQQ ENCSR685PCS Peak bigBed 5 Placenta tissue male embryo DNase peak 4 4609 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/e3b61a2a-873d-48c7-9a47-133213821281/ENCFF176IQQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR905BNO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF294VPD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF146HIT ENCSR685PCS Signal bigWig Placenta tissue male embryo DNase signal 2 4610 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/b4fa6b4b-e0cc-409f-b12c-118e911ac1fd/ENCFF146HIT.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685PCS Signal\ track wgEncodeReg4Epigenetics_ENCFF146HIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF504UUB ENCSR905BNO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF816 ZNF816 ENCSR905BNO signal 2 4610 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/01/081bb74e-9cbd-4e62-9d2b-910180ef223c/ENCFF504UUB.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF816 ZNF816 ENCSR905BNO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR905BNO Signal\ track wgEncodeReg4TfChip_ENCFF504UUB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF472UAQ ENCSR685XVI Peak bigBed 5 Skin epidermis tissue male adult 78 years H3K27ac peak 4 4611 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/a8b33039-b0b3-4b07-88d2-ea42f474c3e5/ENCFF472UAQ.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue male adult 78 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR906OMM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF309DOR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF926SMH ENCSR685XVI Signal bigWig Skin epidermis tissue male adult 78 years H3K27ac signal 2 4612 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/ee2aa5bd-4650-40eb-90fd-92f556b0d70a/ENCFF926SMH.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue male adult 78 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685XVI Signal\ track wgEncodeReg4Epigenetics_ENCFF926SMH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF108ZVB ENCSR906OMM Signal bigWig Gastroesophageal sphincter tissue male adult (54 years) EP300 ENCSR906OMM signal 2 4612 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/efdf2b68-76df-45f3-9cb4-5d5609a0e23b/ENCFF108ZVB.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (54 years) EP300 ENCSR906OMM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR906OMM Signal\ track wgEncodeReg4TfChip_ENCFF108ZVB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF266JHF ENCSR685YMG Peak bigBed 5 K562 treated with 2.5 μM Galeterone for 24 hours ATAC peak 4 4613 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/e33cfabc-8dee-4a9d-bf9a-ef8599d7c409/ENCFF266JHF.bigBed\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 24 hours ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR906PCS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF408UAU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF642SVV ENCSR685YMG Signal bigWig K562 treated with 2.5 μM Galeterone for 24 hours ATAC signal 2 4614 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/0272d859-c6a3-4ee3-9536-ef348ca107df/ENCFF642SVV.bigWig\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685YMG Signal\ track wgEncodeReg4Epigenetics_ENCFF642SVV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF796OMY ENCSR906PCS Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF223 ZNF223 ENCSR906PCS signal 2 4614 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/194c336a-4181-420c-95eb-fdb0c6f5e58c/ENCFF796OMY.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF223 ZNF223 ENCSR906PCS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR906PCS Signal\ track wgEncodeReg4TfChip_ENCFF796OMY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF107YGB ENCSR685ZMP Peak bigBed 5 Right lobe of liver tissue female adult 41 years ATAC peak 4 4615 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/51b528b0-187c-43d7-8e28-68b5564814a6/ENCFF107YGB.bigBed\ color 2,199,185\ longLabel Right lobe of liver tissue female adult 41 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685ZMP Peak\ track wgEncodeReg4Epigenetics_ENCFF107YGB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF524QSR ENCSR906UPC Peak bigBed 5 Sigmoid colon tissue male adult (37 years) EP300 peaks 4 4615 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/acacc64b-179e-4d6c-9d69-21213194d02f/ENCFF524QSR.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (37 years) EP300 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR906UPC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF524QSR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF232QBB ENCSR685ZMP Signal bigWig Right lobe of liver tissue female adult 41 years ATAC signal 2 4616 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/68441500-2ea0-4512-8579-87e48d0dbc45/ENCFF232QBB.bigWig\ color 2,199,185\ longLabel Right lobe of liver tissue female adult 41 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR685ZMP Signal\ track wgEncodeReg4Epigenetics_ENCFF232QBB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF770OAS ENCSR906UPC Signal bigWig Sigmoid colon tissue male adult (37 years) EP300 ENCSR906UPC signal 2 4616 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/84b66f3c-5d50-4272-987f-2dd710f870c6/ENCFF770OAS.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (37 years) EP300 ENCSR906UPC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR906UPC Signal\ track wgEncodeReg4TfChip_ENCFF770OAS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF016ZQG ENCSR686LOE Peak bigBed 5 Middle frontal area 46 tissue female adult 89 years DNase peak 4 4617 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/05338311-8c20-418d-85be-74bc91f182f9/ENCFF016ZQG.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 89 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR686LOE Peak\ track wgEncodeReg4Epigenetics_ENCFF016ZQG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF594PFO ENCSR907BES Peak bigBed 5 Transverse colon tissue male adult (54 years) CTCF peaks 4 4617 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/f8566574-5b6b-494e-9d09-b2b031ae6239/ENCFF594PFO.bigBed\ labelFields none\ longLabel Transverse colon tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR907BES Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF594PFO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF286BFK ENCSR686LOE Signal bigWig Middle frontal area 46 tissue female adult 89 years DNase signal 2 4618 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a53c5951-a9b2-4f6d-b33a-1f8de5e5b8b0/ENCFF286BFK.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 89 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR686LOE Signal\ track wgEncodeReg4Epigenetics_ENCFF286BFK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF435CDF ENCSR907BES Signal bigWig Transverse colon tissue male adult (54 years) CTCF ENCSR907BES signal 2 4618 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/410bd3a7-1069-4f1b-b051-4f7689c03361/ENCFF435CDF.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (54 years) CTCF ENCSR907BES signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR907BES Signal\ track wgEncodeReg4TfChip_ENCFF435CDF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF317JYV ENCSR686WJL Peak bigBed 5 Gastrocnemius medialis tissue female adult 53 years DNase peak 4 4619 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/1fb3a166-cae1-46c0-9a2e-cfb1270ecf02/ENCFF317JYV.bigBed\ color 6,218,147\ labelFields none\ longLabel Gastrocnemius medialis tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR686WJL Peak\ track wgEncodeReg4Epigenetics_ENCFF317JYV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF616RIL ENCSR907MZR Peak bigBed 5 K562 TRIM24 peaks 4 4619 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/7ab7b66d-6906-4a79-b63b-8f25e1ff7166/ENCFF616RIL.bigBed\ labelFields none\ longLabel K562 TRIM24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR907MZR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF616RIL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF712ATQ ENCSR686WJL Signal bigWig Gastrocnemius medialis tissue female adult 53 years DNase signal 2 4620 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/59d3b91b-1c2f-4dae-bd70-1489b2407ed6/ENCFF712ATQ.bigWig\ color 6,218,147\ longLabel Gastrocnemius medialis tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR686WJL Signal\ track wgEncodeReg4Epigenetics_ENCFF712ATQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF933XGN ENCSR907MZR Signal bigWig K562 TRIM24 ENCSR907MZR signal 2 4620 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/8334eee9-9947-4986-98de-71544cc9b0c4/ENCFF933XGN.bigWig\ color 254,75,173\ longLabel K562 TRIM24 ENCSR907MZR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR907MZR Signal\ track wgEncodeReg4TfChip_ENCFF933XGN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF984EVG ENCSR687ZCM Peak bigBed 5 Muscle of leg tissue female embryo 110 days H3K27ac peak 4 4621 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/35529c0b-c081-4139-892a-2ea9571162ce/ENCFF984EVG.bigBed\ color 181,145,0\ longLabel Muscle of leg tissue female embryo 110 days H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR687ZCM Peak\ track wgEncodeReg4Epigenetics_ENCFF984EVG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF128TYE ENCSR908CMW Peak bigBed 5 K562 KDM1A peaks 4 4621 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/57d3a75c-13d4-4768-8d1b-213d4a99d823/ENCFF128TYE.bigBed\ labelFields none\ longLabel K562 KDM1A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR908CMW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF128TYE\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF420RNX ENCSR687ZCM Signal bigWig Muscle of leg tissue female embryo 110 days H3K27ac signal 2 4622 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/27902a64-08bd-4351-a5df-9704de63cbf0/ENCFF420RNX.bigWig\ color 181,145,0\ longLabel Muscle of leg tissue female embryo 110 days H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR687ZCM Signal\ track wgEncodeReg4Epigenetics_ENCFF420RNX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF077ZMN ENCSR908CMW Signal bigWig K562 KDM1A ENCSR908CMW signal 2 4622 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/b755c031-5c35-4ea3-9c4b-caa513e0ebe8/ENCFF077ZMN.bigWig\ color 254,75,173\ longLabel K562 KDM1A ENCSR908CMW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR908CMW Signal\ track wgEncodeReg4TfChip_ENCFF077ZMN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF359TMR ENCSR688AWP Peak bigBed 5 Head of caudate nucleus tissue female adult 90 or above years DNase peak 4 4623 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/1ef081e4-e373-4415-b2ff-de608bde4049/ENCFF359TMR.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR909HMT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF007TAP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF887WPH ENCSR688OIJ Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal 2 4628 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/dbf3320e-f933-41d7-9ca8-11a146bb3b23/ENCFF887WPH.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-2 for 48 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR688OIJ Signal\ track wgEncodeReg4Epigenetics_ENCFF887WPH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF693MRM ENCSR909TSW Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF547 ZNF547 peaks 4 4628 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/1f814389-7962-4db6-a82c-2cca78fea4b5/ENCFF693MRM.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF547 ZNF547 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR909TSW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF693MRM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF098CGH ENCSR689DSM Peak bigBed 5 Peyer's patch tissue female adult 53 years DNase peak 4 4629 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/6635c066-c82b-4b20-8d09-04b76e37c119/ENCFF098CGH.bigBed\ color 6,218,147\ labelFields none\ longLabel Peyer's patch tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689DSM Peak\ track wgEncodeReg4Epigenetics_ENCFF098CGH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF517XUA ENCSR909TSW Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF547 ZNF547 ENCSR909TSW signal 2 4629 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/3ee21125-bc9b-420e-b3d4-7d3dad40a6ba/ENCFF517XUA.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF547 ZNF547 ENCSR909TSW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR909TSW Signal\ track wgEncodeReg4TfChip_ENCFF517XUA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF812JCQ ENCSR689DSM Signal bigWig Peyer's patch tissue female adult 53 years DNase signal 2 4630 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/f2dbff65-6089-4f52-abbd-52571b9c2473/ENCFF812JCQ.bigWig\ color 6,218,147\ longLabel Peyer's patch tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689DSM Signal\ track wgEncodeReg4Epigenetics_ENCFF812JCQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF788MPU ENCSR910JAI Peak bigBed 5 K562 NCOR1 peaks 4 4630 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/015d06a8-e225-4f3f-83a7-c0b57295c4ae/ENCFF788MPU.bigBed\ labelFields none\ longLabel K562 NCOR1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR910JAI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF788MPU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF078TAI ENCSR689FYA Peak bigBed 5 Placenta tissue male embryo DNase peak 4 4631 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/a3f5135c-1e5e-42ca-85fe-c50f80d89592/ENCFF078TAI.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689FYA Peak\ track wgEncodeReg4Epigenetics_ENCFF078TAI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF403TML ENCSR910JAI Signal bigWig K562 NCOR1 ENCSR910JAI signal 2 4631 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/0175417b-d0cd-43e6-a805-1ec7a0135770/ENCFF403TML.bigWig\ color 254,75,173\ longLabel K562 NCOR1 ENCSR910JAI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR910JAI Signal\ track wgEncodeReg4TfChip_ENCFF403TML\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF146YLN ENCSR689FYA Signal bigWig Placenta tissue male embryo DNase signal 2 4632 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/3db72102-f197-4ff3-9330-288d4a267df7/ENCFF146YLN.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689FYA Signal\ track wgEncodeReg4Epigenetics_ENCFF146YLN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF770NCL ENCSR910MUD Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138 ZNF138 peaks 4 4632 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/13474de0-9be2-4345-8865-fc3f685ef079/ENCFF770NCL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138 ZNF138 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR910MUD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF770NCL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF359BHR ENCSR689LFJ Peak bigBed 5 Middle frontal area 46 tissue female adult 83 years CTCF peak 4 4633 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/d25c7c03-1ed8-45d1-a050-b957b88eeec2/ENCFF359BHR.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 83 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689LFJ Peak\ track wgEncodeReg4Epigenetics_ENCFF359BHR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF793WLZ ENCSR910MUD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138 ZNF138 ENCSR910MUD signal 2 4633 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/0face2f3-dd08-4a4f-965c-95f1060eb238/ENCFF793WLZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF138 ZNF138 ENCSR910MUD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR910MUD Signal\ track wgEncodeReg4TfChip_ENCFF793WLZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF992YXC ENCSR689LFJ Signal bigWig Middle frontal area 46 tissue female adult 83 years CTCF signal 2 4634 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/2081c622-a451-4984-b69f-6a0f7d95fa66/ENCFF992YXC.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 83 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689LFJ Signal\ track wgEncodeReg4Epigenetics_ENCFF992YXC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF956UTA ENCSR911GFJ Peak bigBed 5 Right lobe of liver tissue female adult (53 years) CTCF peaks 4 4634 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/49867e75-153b-4899-9489-41ba498b3234/ENCFF956UTA.bigBed\ labelFields none\ longLabel Right lobe of liver tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR911GFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF956UTA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF259OJM ENCSR689SDA Peak bigBed 5 Gastrocnemius medialis tissue female adult 53 years ATAC peak 4 4635 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/c3c503b7-b785-417f-9f4b-45226c6f7d7d/ENCFF259OJM.bigBed\ color 2,199,185\ longLabel Gastrocnemius medialis tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689SDA Peak\ track wgEncodeReg4Epigenetics_ENCFF259OJM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF005YBS ENCSR911GFJ Signal bigWig Right lobe of liver tissue female adult (53 years) CTCF ENCSR911GFJ signal 2 4635 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4c51837a-3eed-478e-9b6e-5c1186aeab7d/ENCFF005YBS.bigWig\ color 137,152,82\ longLabel Right lobe of liver tissue female adult (53 years) CTCF ENCSR911GFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR911GFJ Signal\ track wgEncodeReg4TfChip_ENCFF005YBS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF124UIG ENCSR689SDA Signal bigWig Gastrocnemius medialis tissue female adult 53 years ATAC signal 2 4636 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/73837ee3-ca51-45bf-bbc2-8ae3e921e016/ENCFF124UIG.bigWig\ color 2,199,185\ longLabel Gastrocnemius medialis tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689SDA Signal\ track wgEncodeReg4Epigenetics_ENCFF124UIG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF832RQK ENCSR911JAX Peak bigBed 5 Prostate gland tissue male adult (37 years) POLR2A peaks 4 4636 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4e303bc0-23d5-41ab-bcfd-b221fda9e379/ENCFF832RQK.bigBed\ labelFields none\ longLabel Prostate gland tissue male adult (37 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR911JAX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF832RQK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF755YSO ENCSR689VEF Peak bigBed 5 Tibial nerve tissue male adult 54 years CTCF peak 4 4637 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/adaf8e2b-0c0c-4b4f-8640-76573d96a17b/ENCFF755YSO.bigBed\ color 0,176,240\ labelFields none\ longLabel Tibial nerve tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689VEF Peak\ track wgEncodeReg4Epigenetics_ENCFF755YSO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF131ARU ENCSR911JAX Signal bigWig Prostate gland tissue male adult (37 years) POLR2A ENCSR911JAX signal 2 4637 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4a130bd5-3b75-42f6-9594-276eff9bcc74/ENCFF131ARU.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (37 years) POLR2A ENCSR911JAX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR911JAX Signal\ track wgEncodeReg4TfChip_ENCFF131ARU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF543LIT ENCSR689VEF Signal bigWig Tibial nerve tissue male adult 54 years CTCF signal 2 4638 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/699fa1a7-784b-424b-893e-af8ffb18079e/ENCFF543LIT.bigWig\ color 0,176,240\ longLabel Tibial nerve tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR689VEF Signal\ track wgEncodeReg4Epigenetics_ENCFF543LIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF066OAK ENCSR911MML Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 peaks 4 4638 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/27/5923565e-4472-4f7a-b564-a92bd974cba1/ENCFF066OAK.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR911MML Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF066OAK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF132XZI ENCSR690ADK Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 DNase peak 4 4639 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/6830e55a-1b89-4e3b-9d20-ae51db72151a/ENCFF132XZI.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR690ADK Peak\ track wgEncodeReg4Epigenetics_ENCFF132XZI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF417MVR ENCSR911MML Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 ENCSR911MML signal 2 4639 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/26/baecb810-b981-4e18-aebc-9aa5c99d0997/ENCFF417MVR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 ENCSR911MML signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR911MML Signal\ track wgEncodeReg4TfChip_ENCFF417MVR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF136DSS ENCSR690ADK Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 DNase signal 2 4640 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/10d5fac7-8216-46de-aa77-774e9d2387e4/ENCFF136DSS.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SMARCA5 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR690ADK Signal\ track wgEncodeReg4Epigenetics_ENCFF136DSS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF399JYQ ENCSR913JBH Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP63 TP63 peaks 4 4640 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/06/24/a5b612ed-8304-4e8d-a4db-4c08025e847a/ENCFF399JYQ.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP63 TP63 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR913JBH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF399JYQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF821GYR ENCSR690CVL Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 4641 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/dde257a4-38c6-4d13-80b5-11a3c764e39c/ENCFF821GYR.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR690CVL Peak\ track wgEncodeReg4Epigenetics_ENCFF821GYR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF448FFF ENCSR913JBH Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP63 TP63 ENCSR913JBH signal 2 4641 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/984aee36-7665-4957-b377-1150e8d0b5f2/ENCFF448FFF.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens TP63 TP63 ENCSR913JBH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR913JBH Signal\ track wgEncodeReg4TfChip_ENCFF448FFF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF108TMD ENCSR690CVL Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 4642 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/db8a9eb0-62d0-40a0-bec9-c58a273e1bb3/ENCFF108TMD.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR690CVL Signal\ track wgEncodeReg4Epigenetics_ENCFF108TMD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF916FZN ENCSR913ODG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF2 MTF2 peaks 4 4642 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/7cbfc452-f5a9-4f4c-9cf8-222b58e71be0/ENCFF916FZN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF2 MTF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR913ODG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF916FZN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF871TSQ ENCSR691MQJ Peak bigBed 5 EL DNase peak 4 4643 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/eae858a1-27a8-43af-bc3f-9d6339f7faa8/ENCFF871TSQ.bigBed\ color 6,218,147\ labelFields none\ longLabel EL DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR691MQJ Peak\ track wgEncodeReg4Epigenetics_ENCFF871TSQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF762YJW ENCSR913ODG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF2 MTF2 ENCSR913ODG signal 2 4643 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/7c5be873-eb22-4534-8a8d-3e181fe9d83f/ENCFF762YJW.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTF2 MTF2 ENCSR913ODG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR913ODG Signal\ track wgEncodeReg4TfChip_ENCFF762YJW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF606CBT ENCSR691MQJ Signal bigWig EL DNase signal 2 4644 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/878ccf58-eafb-49ff-9892-d764feec1969/ENCFF606CBT.bigWig\ color 6,218,147\ longLabel EL DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR691MQJ Signal\ track wgEncodeReg4Epigenetics_ENCFF606CBT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF277YTN ENCSR913SEI Peak bigBed 5 Alzheimer's disease; middle frontal area 46 tissue female adult (86 years) CTCF peaks 4 4644 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/7bb40d87-e1f7-4bf9-98a2-7a68b931e52b/ENCFF277YTN.bigBed\ labelFields none\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (86 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR913SEI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF277YTN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF156MFM ENCSR692PKU Peak bigBed 5 Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak 4 4645 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/7299f2f0-2c29-41fa-8ae4-15ff686a2c08/ENCFF156MFM.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR692PKU Peak\ track wgEncodeReg4Epigenetics_ENCFF156MFM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF754BJX ENCSR913SEI Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (86 years) CTCF ENCSR913SEI signal 2 4645 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/2e4a0be4-815f-4584-b35d-ee5d23955dc9/ENCFF754BJX.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (86 years) CTCF ENCSR913SEI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR913SEI Signal\ track wgEncodeReg4TfChip_ENCFF754BJX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF540DAA ENCSR692PKU Signal bigWig Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal 2 4646 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/87421c92-d8bb-4f17-b7e6-ea26b8b7589b/ENCFF540DAA.bigWig\ color 6,218,147\ longLabel Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR692PKU Signal\ track wgEncodeReg4Epigenetics_ENCFF540DAA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF984YCN ENCSR914HPP Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44 ZNF44 peaks 4 4646 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/6c6ee08e-b5d5-4080-9637-bdb5f592948e/ENCFF984YCN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44 ZNF44 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR914HPP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF984YCN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF056ABK ENCSR693GVU Peak bigBed 5 Cingulate gyrus tissue female adult 75 years H3K4me3 peak 4 4647 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/81a56ce1-8bed-4812-a5bd-161ad792bbbc/ENCFF056ABK.bigBed\ color 255,0,0\ longLabel Cingulate gyrus tissue female adult 75 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR693GVU Peak\ track wgEncodeReg4Epigenetics_ENCFF056ABK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF157FHF ENCSR914HPP Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44 ZNF44 ENCSR914HPP signal 2 4647 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/6eac7aa2-faa4-4249-9db5-3b58cc17ceaf/ENCFF157FHF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF44 ZNF44 ENCSR914HPP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR914HPP Signal\ track wgEncodeReg4TfChip_ENCFF157FHF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF282SRM ENCSR693GVU Signal bigWig Cingulate gyrus tissue female adult 75 years H3K4me3 signal 2 4648 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/fd2a3bc3-b74f-4968-8e4e-8932e1833ccc/ENCFF282SRM.bigWig\ color 255,0,0\ longLabel Cingulate gyrus tissue female adult 75 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR693GVU Signal\ track wgEncodeReg4Epigenetics_ENCFF282SRM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF289UFB ENCSR914NEI Peak bigBed 5 K562 MTA3 peaks 4 4648 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/2715d9f5-b560-4863-8471-abe9426d20d9/ENCFF289UFB.bigBed\ labelFields none\ longLabel K562 MTA3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR914NEI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF289UFB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF190JLM ENCSR693UHT Peak bigBed 5 Omental fat pad tissue female adult 51 years DNase peak 4 4649 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/2a29fa0e-7754-4571-9ef3-44846db28c4c/ENCFF190JLM.bigBed\ color 6,218,147\ labelFields none\ longLabel Omental fat pad tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR693UHT Peak\ track wgEncodeReg4Epigenetics_ENCFF190JLM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF074TUE ENCSR914NEI Signal bigWig K562 MTA3 ENCSR914NEI signal 2 4649 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/9babdf0a-b610-46f6-8f35-78ce88fe6df2/ENCFF074TUE.bigWig\ color 254,75,173\ longLabel K562 MTA3 ENCSR914NEI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR914NEI Signal\ track wgEncodeReg4TfChip_ENCFF074TUE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF606INL ENCSR693UHT Signal bigWig Omental fat pad tissue female adult 51 years DNase signal 2 4650 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/02d7ab01-8fac-4506-97e9-4d02f684dce1/ENCFF606INL.bigWig\ color 6,218,147\ longLabel Omental fat pad tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR693UHT Signal\ track wgEncodeReg4Epigenetics_ENCFF606INL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF160WNN ENCSR915APT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TUT4 ZCCHC11 peaks 4 4650 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/f8e412d6-4633-4817-97b0-aad8cd3ef5ec/ENCFF160WNN.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TUT4 ZCCHC11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR915APT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF160WNN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF242LOL ENCSR693VHX Peak bigBed 5 Foreskin melanocyte male newborn H3K27ac peak 4 4651 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/8d692f4c-978d-4445-8199-2d1bad1c2e8c/ENCFF242LOL.bigBed\ color 181,145,0\ longLabel Foreskin melanocyte male newborn H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR693VHX Peak\ track wgEncodeReg4Epigenetics_ENCFF242LOL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF884FWR ENCSR915APT Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TUT4 ZCCHC11 ENCSR915APT signal 2 4651 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/953efe43-3758-44ec-be79-fb6976fee0e3/ENCFF884FWR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TUT4 ZCCHC11 ENCSR915APT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR915APT Signal\ track wgEncodeReg4TfChip_ENCFF884FWR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF848DAV ENCSR693VHX Signal bigWig Foreskin melanocyte male newborn H3K27ac signal 2 4652 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/325e56eb-0c15-4533-b97a-67e3fbbb7e65/ENCFF848DAV.bigWig\ color 181,145,0\ longLabel Foreskin melanocyte male newborn H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR693VHX Signal\ track wgEncodeReg4Epigenetics_ENCFF848DAV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070PCA ENCSR916JAC Peak bigBed 5 Gastroesophageal sphincter tissue male adult (37 years) POLR2AphosphoS5 peaks 4 4652 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/de576cc3-f56e-4d58-85e4-85c6e654e939/ENCFF070PCA.bigBed\ labelFields none\ longLabel Gastroesophageal sphincter tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR916JAC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF070PCA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF379NGG ENCSR694DOX Peak bigBed 5 Posterior cingulate gyrus tissue male adult 83 years DNase peak 4 4653 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/10712621-1711-47a9-b4a6-e912a0a50808/ENCFF379NGG.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue male adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694DOX Peak\ track wgEncodeReg4Epigenetics_ENCFF379NGG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF593GTX ENCSR916JAC Signal bigWig Gastroesophageal sphincter tissue male adult (37 years) POLR2AphosphoS5 ENCSR916JAC signal 2 4653 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/f4b1e54c-a29c-4fe1-8239-038dfcefd7cb/ENCFF593GTX.bigWig\ color 137,135,170\ longLabel Gastroesophageal sphincter tissue male adult (37 years) POLR2AphosphoS5 ENCSR916JAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR916JAC Signal\ track wgEncodeReg4TfChip_ENCFF593GTX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF130TYS ENCSR694DOX Signal bigWig Posterior cingulate gyrus tissue male adult 83 years DNase signal 2 4654 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/848e6641-4b3f-4873-b38d-f4fbee0e6ec7/ENCFF130TYS.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue male adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694DOX Signal\ track wgEncodeReg4Epigenetics_ENCFF130TYS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF485PAC ENCSR917QNE Peak bigBed 5 Nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 peaks 4 4654 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/6aa5720d-7b7b-4f24-a7dc-7eb9e721b123/ENCFF485PAC.bigBed\ labelFields none\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR917QNE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF485PAC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF172GAK ENCSR694LFE Peak bigBed 5 Heart right ventricle tissue male adult 61 years DNase peak 4 4655 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/6c33773a-e091-428d-aa1b-7d2ba6f9fbdc/ENCFF172GAK.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue male adult 61 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694LFE Peak\ track wgEncodeReg4Epigenetics_ENCFF172GAK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF134FYR ENCSR917QNE Signal bigWig Nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 ENCSR917QNE signal 2 4655 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/f6d095d7-60ff-470d-b562-cb525c74b9a0/ENCFF134FYR.bigWig\ color 137,152,82\ longLabel Nonobstructive coronary artery disease; liver tissue male adult (32 years) RAD21 ENCSR917QNE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR917QNE Signal\ track wgEncodeReg4TfChip_ENCFF134FYR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF688CZD ENCSR694LFE Signal bigWig Heart right ventricle tissue male adult 61 years DNase signal 2 4656 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/65d96781-9bd3-418a-9221-9c98eb6d8b13/ENCFF688CZD.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue male adult 61 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694LFE Signal\ track wgEncodeReg4Epigenetics_ENCFF688CZD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF029EEU ENCSR918GHT Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSB FOSB peaks 4 4656 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/37c4c03f-08aa-4410-b7fc-16dd79af1499/ENCFF029EEU.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSB FOSB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR918GHT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF029EEU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF219GCS ENCSR694RCH Peak bigBed 5 Muscle layer of duodenum tissue male adult 59 years H3K27ac peak 4 4657 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5957bb75-86a9-4cc5-a83d-b34392d89f6a/ENCFF219GCS.bigBed\ color 181,145,0\ longLabel Muscle layer of duodenum tissue male adult 59 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694RCH Peak\ track wgEncodeReg4Epigenetics_ENCFF219GCS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF679DDH ENCSR918GHT Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSB FOSB ENCSR918GHT signal 2 4657 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/a994a2ec-1c1b-440d-a98d-01044d8e96ab/ENCFF679DDH.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens FOSB FOSB ENCSR918GHT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR918GHT Signal\ track wgEncodeReg4TfChip_ENCFF679DDH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF106ZZM ENCSR694RCH Signal bigWig Muscle layer of duodenum tissue male adult 59 years H3K27ac signal 2 4658 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2fdc123d-8da9-479c-bd76-43c37827bd00/ENCFF106ZZM.bigWig\ color 181,145,0\ longLabel Muscle layer of duodenum tissue male adult 59 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694RCH Signal\ track wgEncodeReg4Epigenetics_ENCFF106ZZM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF410NSZ ENCSR918LRB Peak bigBed 5 GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 peaks 4 4658 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/53e8be6d-32f1-4211-9b55-c691ea932a19/ENCFF410NSZ.bigBed\ labelFields none\ longLabel GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR918LRB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF410NSZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF111KOF ENCSR694YJR Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 DNase peak 4 4659 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/8e73dbad-b7ae-485a-940b-87bc5fe00c11/ENCFF111KOF.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694YJR Peak\ track wgEncodeReg4Epigenetics_ENCFF111KOF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF785ACK ENCSR918LRB Signal bigWig GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 ENCSR918LRB signal 2 4659 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/f7049584-9775-4272-8d22-d192c1ad5dd9/ENCFF785ACK.bigWig\ color 127,133,209\ longLabel GM23338 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 ZNF331 ENCSR918LRB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR918LRB Signal\ track wgEncodeReg4TfChip_ENCFF785ACK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF609EOJ ENCSR694YJR Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 DNase signal 2 4660 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/15/4a8781ca-9b41-4df6-abb2-80134a647871/ENCFF609EOJ.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR694YJR Signal\ track wgEncodeReg4Epigenetics_ENCFF609EOJ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF946IUP ENCSR918OKK Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TAF1 TAF1 peaks 4 4660 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/a35c2907-4e5c-437d-88e7-254649de89d5/ENCFF946IUP.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TAF1 TAF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR918OKK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF946IUP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF295ATK ENCSR695AUY Peak bigBed 5 CD14-positive monocyte female adult 34 years DNase peak 4 4661 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/70310b8e-27b0-494d-9845-d78d10395602/ENCFF295ATK.bigBed\ color 6,218,147\ labelFields none\ longLabel CD14-positive monocyte female adult 34 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR695AUY Peak\ track wgEncodeReg4Epigenetics_ENCFF295ATK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF533HKX ENCSR918OKK Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TAF1 TAF1 ENCSR918OKK signal 2 4661 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/235b5265-dbf8-42be-8837-2e3e09d15779/ENCFF533HKX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TAF1 TAF1 ENCSR918OKK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR918OKK Signal\ track wgEncodeReg4TfChip_ENCFF533HKX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF353UAY ENCSR695AUY Signal bigWig CD14-positive monocyte female adult 34 years DNase signal 2 4662 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/a442ebaa-d94d-4cbe-bfc0-f2756dceb86b/ENCFF353UAY.bigWig\ color 6,218,147\ longLabel CD14-positive monocyte female adult 34 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR695AUY Signal\ track wgEncodeReg4Epigenetics_ENCFF353UAY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF336LFH ENCSR919CZU Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2 EGR2 peaks 4 4662 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ac2b1874-2844-4469-a0e8-06b1b1f511c9/ENCFF336LFH.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2 EGR2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR919CZU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF336LFH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF275SKT ENCSR695FLC Peak bigBed 5 Mucosa of gallbladder tissue female child 16 years ATAC peak 4 4663 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/31bd5d44-6bc8-4b01-81cd-e762d770f125/ENCFF275SKT.bigBed\ color 2,199,185\ longLabel Mucosa of gallbladder tissue female child 16 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR695FLC Peak\ track wgEncodeReg4Epigenetics_ENCFF275SKT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF233AXB ENCSR919CZU Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2 EGR2 ENCSR919CZU signal 2 4663 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/6ac9e1ee-99f8-46ac-89b0-12e861f5e10c/ENCFF233AXB.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens EGR2 EGR2 ENCSR919CZU signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR919CZU Signal\ track wgEncodeReg4TfChip_ENCFF233AXB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF840RIZ ENCSR695FLC Signal bigWig Mucosa of gallbladder tissue female child 16 years ATAC signal 2 4664 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/5e73d60d-8b93-4a16-a335-36426821b933/ENCFF840RIZ.bigWig\ color 2,199,185\ longLabel Mucosa of gallbladder tissue female child 16 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR695FLC Signal\ track wgEncodeReg4Epigenetics_ENCFF840RIZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF384GAB ENCSR919UCY Peak bigBed 5 Vagina tissue female adult (53 years) POLR2AphosphoS5 peaks 4 4664 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/24/c5d6b42e-4dce-433c-8c66-3eb3e57a6657/ENCFF384GAB.bigBed\ labelFields none\ longLabel Vagina tissue female adult (53 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR919UCY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF384GAB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF326ZDZ ENCSR696DVE Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K27ac peak 4 4665 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/0798d26b-8033-4aeb-8d58-b74b46519ad6/ENCFF326ZDZ.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696DVE Peak\ track wgEncodeReg4Epigenetics_ENCFF326ZDZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF069PIW ENCSR919UCY Signal bigWig Vagina tissue female adult (53 years) POLR2AphosphoS5 ENCSR919UCY signal 2 4665 255 101 174 255 178 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/24/a3a21613-b73d-4154-9efb-b4f112da73f2/ENCFF069PIW.bigWig\ color 255,101,174\ longLabel Vagina tissue female adult (53 years) POLR2AphosphoS5 ENCSR919UCY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR919UCY Signal\ track wgEncodeReg4TfChip_ENCFF069PIW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF606OFL ENCSR696DVE Signal bigWig CD4-positive, alpha-beta memory T cell H3K27ac signal 2 4666 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/952f1622-0ea5-4e07-9501-ddd28c2edb3d/ENCFF606OFL.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696DVE Signal\ track wgEncodeReg4Epigenetics_ENCFF606OFL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF169LZT ENCSR920ASP Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX peaks 4 4666 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/1a5e9839-0e1b-4ac4-b007-0a3db36cba37/ENCFF169LZT.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR920ASP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF169LZT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF468DSY ENCSR696LPC Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak 4 4667 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d0752fab-9d97-4875-b375-96e02c027d94/ENCFF468DSY.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696LPC Peak\ track wgEncodeReg4Epigenetics_ENCFF468DSY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF572ZZW ENCSR920ASP Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX ENCSR920ASP signal 2 4667 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/3888b4f0-b3f4-49ef-9c6a-fbd28658c41b/ENCFF572ZZW.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFX ZFX ENCSR920ASP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR920ASP Signal\ track wgEncodeReg4TfChip_ENCFF572ZZW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF473VAY ENCSR696LPC Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal 2 4668 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/777226e2-5ef2-4995-9d5d-d0919ebb8236/ENCFF473VAY.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696LPC Signal\ track wgEncodeReg4Epigenetics_ENCFF473VAY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF984TCS ENCSR920BLG Peak bigBed 5 K562 SIN3A peaks 4 4668 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/5870c653-d8d5-4efd-bbf8-9f486538ba60/ENCFF984TCS.bigBed\ labelFields none\ longLabel K562 SIN3A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR920BLG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF984TCS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF229DOC ENCSR696XSJ Peak bigBed 5 Adrenal gland tissue female embryo 113 days DNase peak 4 4669 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/be15fa57-1bf4-4504-b36d-eef0850c8897/ENCFF229DOC.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue female embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696XSJ Peak\ track wgEncodeReg4Epigenetics_ENCFF229DOC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF085NLG ENCSR920BLG Signal bigWig K562 SIN3A ENCSR920BLG signal 2 4669 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/5daba612-8645-4c4a-a7b0-1862e2c40234/ENCFF085NLG.bigWig\ color 254,75,173\ longLabel K562 SIN3A ENCSR920BLG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR920BLG Signal\ track wgEncodeReg4TfChip_ENCFF085NLG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF676EBG ENCSR696XSJ Signal bigWig Adrenal gland tissue female embryo 113 days DNase signal 2 4670 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/e8073e4a-c55f-452c-bf1c-aee527e57a29/ENCFF676EBG.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696XSJ Signal\ track wgEncodeReg4Epigenetics_ENCFF676EBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF084CSE ENCSR920ENCFF084CSE Signal bigWig Sigmoid colon tissue male adult (37 years) POLR2AphosphoS5 ENCSR920ENCFF084CSE signal 2 4670 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/17287a3c-7479-4dbb-ab5a-59b2e3f785f6/ENCFF084CSE.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (37 years) POLR2AphosphoS5 ENCSR920ENCFF084CSE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR920ENCFF084CSE Signal\ track wgEncodeReg4TfChip_ENCFF084CSE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF966HSZ ENCSR696ZDW Peak bigBed 5 Immature natural killer cell DNase peak 4 4671 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/21/a7cbee9e-9bab-4d7c-8be2-8f7b67ab2059/ENCFF966HSZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Immature natural killer cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696ZDW Peak\ track wgEncodeReg4Epigenetics_ENCFF966HSZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF748YVT ENCSR920ENCFF748YVT Peak bigBed 5 Sigmoid colon tissue male adult (37 years) POLR2AphosphoS5 peaks 4 4671 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/d1f1ca4f-cdbf-4337-8db8-fa7c92241e44/ENCFF748YVT.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR920ENCFF748YVT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF748YVT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF932AQG ENCSR696ZDW Signal bigWig Immature natural killer cell DNase signal 2 4672 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/21/42b8c83c-3b09-4ecc-89b8-541dd20ce44c/ENCFF932AQG.bigWig\ color 6,218,147\ longLabel Immature natural killer cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR696ZDW Signal\ track wgEncodeReg4Epigenetics_ENCFF932AQG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF617PTB ENCSR922GUA Peak bigBed 5 Esophagus muscularis mucosa tissue female adult (53 years) POLR2A peaks 4 4672 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/f7db307f-457e-41e6-a226-f0fcd1d52fa5/ENCFF617PTB.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR922GUA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF617PTB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF733HNM ENCSR697FME Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 38 years DNase peak 4 4673 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/38702052-052b-45bb-ab48-054151e63092/ENCFF733HNM.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell male adult 38 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR697FME Peak\ track wgEncodeReg4Epigenetics_ENCFF733HNM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF593JAU ENCSR922GUA Signal bigWig Esophagus muscularis mucosa tissue female adult (53 years) POLR2A ENCSR922GUA signal 2 4673 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/b72818a1-d99b-4a58-b4df-9edd6be0ecfa/ENCFF593JAU.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) POLR2A ENCSR922GUA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR922GUA Signal\ track wgEncodeReg4TfChip_ENCFF593JAU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF029XBE ENCSR697FME Signal bigWig CD4-positive, alpha-beta T cell male adult 38 years DNase signal 2 4674 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/02/639e7c46-611f-4a9d-a5e2-305da76ebc5d/ENCFF029XBE.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell male adult 38 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR697FME Signal\ track wgEncodeReg4Epigenetics_ENCFF029XBE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF087VBI ENCSR922HGS Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks 4 4674 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/eb6424f3-a358-4209-b6fe-3aab1c93df24/ENCFF087VBI.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue female adult (90 or above years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR697YIN Peak\ track wgEncodeReg4Epigenetics_ENCFF341QWO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF742AUP ENCSR923MOO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2D MEF2D ENCSR923MOO signal 2 4681 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/8e13cdff-eaec-4ff7-a8ea-c1964e4aa075/ENCFF742AUP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEF2D MEF2D ENCSR923MOO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR923MOO Signal\ track wgEncodeReg4TfChip_ENCFF742AUP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF156LWF ENCSR697YIN Signal bigWig Breast epithelium tissue male adult 54 years CTCF signal 2 4682 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/e1b0157e-e0a8-42cf-8a75-8dbf0489ceaa/ENCFF156LWF.bigWig\ color 0,176,240\ longLabel Breast epithelium tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR697YIN Signal\ track wgEncodeReg4Epigenetics_ENCFF156LWF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF819JPN ENCSR923UTX Peak bigBed 5 HepG2 NONO peaks 4 4682 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/4734a228-843d-4bb6-beac-cb49fefbb3f0/ENCFF819JPN.bigBed\ labelFields none\ longLabel HepG2 NONO peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR698CUE Peak\ track wgEncodeReg4Epigenetics_ENCFF841UKX\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF082IPY ENCSR923UTX Signal bigWig HepG2 NONO ENCSR923UTX signal 2 4683 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/194b4338-30e9-4bfa-8f6d-74d138e4d25d/ENCFF082IPY.bigWig\ color 137,152,82\ longLabel HepG2 NONO ENCSR923UTX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR923UTX Signal\ track wgEncodeReg4TfChip_ENCFF082IPY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF758ZXY ENCSR698CUE Signal bigWig Muscle of back tissue male embryo 96 days DNase signal 2 4684 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/3684c282-7456-439a-9136-13679433beca/ENCFF758ZXY.bigWig\ color 6,218,147\ longLabel Muscle of back tissue male embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR698CUE Signal\ track wgEncodeReg4Epigenetics_ENCFF758ZXY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF682PXQ ENCSR923WJS Peak bigBed 5 Sigmoid colon tissue male adult (54 years) EP300 peaks 4 4684 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/947a70f5-0d49-4cbb-b880-000c2e6d117b/ENCFF682PXQ.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (54 years) EP300 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR698VDM Peak\ track wgEncodeReg4Epigenetics_ENCFF997QFN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF306KIT ENCSR923WJS Signal bigWig Sigmoid colon tissue male adult (54 years) EP300 ENCSR923WJS signal 2 4685 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/3b5064f4-79d2-44c1-9b0f-aaa13985c0bb/ENCFF306KIT.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (54 years) EP300 ENCSR923WJS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR923WJS Signal\ track wgEncodeReg4TfChip_ENCFF306KIT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF004FDW ENCSR698VDM Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase signal 2 4686 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f23a829d-5957-4702-81ef-659489026691/ENCFF004FDW.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 50 U/mL Interleukin-2 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR698VDM Signal\ track wgEncodeReg4Epigenetics_ENCFF004FDW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF772SGA ENCSR924GXX Peak bigBed 5 K562 PHB2 peaks 4 4686 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/f69f349a-4c12-4956-a56d-8526183d8eff/ENCFF772SGA.bigBed\ labelFields none\ longLabel K562 PHB2 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR699BRV Peak\ track wgEncodeReg4Epigenetics_ENCFF835ZSJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF321TEP ENCSR924GXX Signal bigWig K562 PHB2 ENCSR924GXX signal 2 4687 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/11a51be9-872a-4002-8532-1795b0505294/ENCFF321TEP.bigWig\ color 254,75,173\ longLabel K562 PHB2 ENCSR924GXX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR924GXX Signal\ track wgEncodeReg4TfChip_ENCFF321TEP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF685MPU ENCSR699BRV Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 4688 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/01f0e84d-3d23-4599-8f52-c2bf9f5cdb5c/ENCFF685MPU.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR699BRV Signal\ track wgEncodeReg4Epigenetics_ENCFF685MPU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF311TOD ENCSR924LSO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4 E2F4 peaks 4 4688 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/f7f5ce8f-a349-4dac-85d4-efe4974fb68e/ENCFF311TOD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4 E2F4 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR700HPA Peak\ track wgEncodeReg4Epigenetics_ENCFF035RGV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF491MUP ENCSR924LSO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4 E2F4 ENCSR924LSO signal 2 4689 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/a94d0d36-614e-489d-8f0b-74cde9160427/ENCFF491MUP.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens E2F4 E2F4 ENCSR924LSO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR924LSO Signal\ track wgEncodeReg4TfChip_ENCFF491MUP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF227LPR ENCSR700HPA Signal bigWig GM18499 ATAC signal 2 4690 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/b6dc6347-ce58-4a6f-93f3-786b010b5c55/ENCFF227LPR.bigWig\ color 2,199,185\ longLabel GM18499 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR700HPA Signal\ track wgEncodeReg4Epigenetics_ENCFF227LPR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF983ILY ENCSR924TVL Peak bigBed 5 MCF-7 RFX5 peaks 4 4690 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/30/0c81c519-a40b-4ecc-b6d9-0067db9b34cb/ENCFF983ILY.bigBed\ labelFields none\ longLabel MCF-7 RFX5 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR701GXD Peak\ track wgEncodeReg4Epigenetics_ENCFF096MIN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF394NSO ENCSR925QAW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20B HMG20B ENCSR925QAW signal 2 4697 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/6514b805-9edc-49dc-9dbd-3c08379092ee/ENCFF394NSO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20B HMG20B ENCSR925QAW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR925QAW Signal\ track wgEncodeReg4TfChip_ENCFF394NSO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF956EMA ENCSR701GXD Signal bigWig Natural killer cell female adult 41 years H3K27ac signal 2 4698 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/9559c7c0-b7eb-4df7-a60b-6989ec8ed101/ENCFF956EMA.bigWig\ color 181,145,0\ longLabel Natural killer cell female adult 41 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR701GXD Signal\ track wgEncodeReg4Epigenetics_ENCFF956EMA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF543QAU ENCSR925TWM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6 ETV6 peaks 4 4698 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/7c4340b1-d261-4e48-8b98-9cf398848fbc/ENCFF543QAU.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6 ETV6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR925TWM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF543QAU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF534ULI ENCSR702DPD Peak bigBed 5 Upper lobe of left lung tissue female adult 53 years DNase peak 4 4699 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/016f563f-dbc6-45f9-aa5b-d49bd44a9329/ENCFF534ULI.bigBed\ color 6,218,147\ labelFields none\ longLabel Upper lobe of left lung tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR702DPD Peak\ track wgEncodeReg4Epigenetics_ENCFF534ULI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF827OVI ENCSR925TWM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6 ETV6 ENCSR925TWM signal 2 4699 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/6d746773-039b-43c9-9b4a-26cc0f946b17/ENCFF827OVI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6 ETV6 ENCSR925TWM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR925TWM Signal\ track wgEncodeReg4TfChip_ENCFF827OVI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF960WAV ENCSR702DPD Signal bigWig Upper lobe of left lung tissue female adult 53 years DNase signal 2 4700 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/e3edcc16-7ff4-4499-8e18-e2daa44b686d/ENCFF960WAV.bigWig\ color 6,218,147\ longLabel Upper lobe of left lung tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR702DPD Signal\ track wgEncodeReg4Epigenetics_ENCFF960WAV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF346PQL ENCSR926KTP Peak bigBed 5 K562 stably expressing IRF9 IRF9 peaks 4 4700 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4f85e8ef-0213-474b-b3cc-24c13f5f8fd2/ENCFF346PQL.bigBed\ labelFields none\ longLabel K562 stably expressing IRF9 IRF9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR926KTP Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF346PQL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF508DDS ENCSR702OVJ Peak bigBed 5 Heart left ventricle tissue female adult 51 years H3K27ac peak 4 4701 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/32288d58-513f-4ca1-8d37-bb3b3ee3368b/ENCFF508DDS.bigBed\ color 181,145,0\ longLabel Heart left ventricle tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR702OVJ Peak\ track wgEncodeReg4Epigenetics_ENCFF508DDS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF345UOO ENCSR926KTP Signal bigWig K562 stably expressing IRF9 IRF9 ENCSR926KTP signal 2 4701 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/b24941e4-56e0-448e-a96f-a040cf1a7cc7/ENCFF345UOO.bigWig\ color 254,75,173\ longLabel K562 stably expressing IRF9 IRF9 ENCSR926KTP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR926KTP Signal\ track wgEncodeReg4TfChip_ENCFF345UOO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF522YPN ENCSR702OVJ Signal bigWig Heart left ventricle tissue female adult 51 years H3K27ac signal 2 4702 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/41cd1e98-238b-4003-ba98-be968cba506a/ENCFF522YPN.bigWig\ color 181,145,0\ longLabel Heart left ventricle tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR702OVJ Signal\ track wgEncodeReg4Epigenetics_ENCFF522YPN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF916DEM ENCSR927UJQ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB1 ZBTB1 peaks 4 4702 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/f2503b71-bb2e-4c41-9472-c457902f2f3d/ENCFF916DEM.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB1 ZBTB1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR927UJQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF916DEM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF647VPV ENCSR702VYW Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak 4 4703 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/e1512dca-5ba2-4ce5-97ed-bc6e31c36950/ENCFF647VPV.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR702VYW Peak\ track wgEncodeReg4Epigenetics_ENCFF647VPV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF259YQM ENCSR927UJQ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB1 ZBTB1 ENCSR927UJQ signal 2 4703 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/59b2d111-995e-44a6-b9ed-9d4e20b48d1a/ENCFF259YQM.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZBTB1 ZBTB1 ENCSR927UJQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR927UJQ Signal\ track wgEncodeReg4TfChip_ENCFF259YQM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF241EHU ENCSR702VYW Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal 2 4704 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/6265922b-7565-4409-be2c-decad8d4a86a/ENCFF241EHU.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CTCF treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR702VYW Signal\ track wgEncodeReg4Epigenetics_ENCFF241EHU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF144SCF ENCSR928API Peak bigBed 5 HepG2 RFX1 peaks 4 4704 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/345b8878-0755-449c-a699-f354ba4d5d7f/ENCFF144SCF.bigBed\ labelFields none\ longLabel HepG2 RFX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR928API Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF144SCF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF989IYO ENCSR703AYZ Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase peak 4 4705 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/b73af178-c267-4db0-b2a6-2e2e86ba35aa/ENCFF989IYO.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR703TWY Peak\ track wgEncodeReg4Epigenetics_ENCFF284CBL\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF505OIJ ENCSR928RNP Signal bigWig Heart right ventricle tissue male adult (43 years) CTCF ENCSR928RNP signal 2 4711 116 50 165 185 152 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/38abd6ab-5c27-4bab-b81a-fcaa7413b456/ENCFF505OIJ.bigWig\ color 116,50,165\ longLabel Heart right ventricle tissue male adult (43 years) CTCF ENCSR928RNP signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR928RNP Signal\ track wgEncodeReg4TfChip_ENCFF505OIJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF934TRW ENCSR703TWY Signal bigWig Multiple sclerosis immature natural killer cell H3K4me3 signal 2 4712 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/b401c1fb-26de-427a-b796-fdb72ec95a0a/ENCFF934TRW.bigWig\ color 255,0,0\ longLabel Multiple sclerosis immature natural killer cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR703TWY Signal\ track wgEncodeReg4Epigenetics_ENCFF934TRW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF446RJQ ENCSR929IMB Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKNA AKNA peaks 4 4712 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/87171816-ddab-411f-b39b-ace9b77e4caf/ENCFF446RJQ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKNA AKNA peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR703VGI Peak\ track wgEncodeReg4Epigenetics_ENCFF375BOE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF770NFX ENCSR929IMB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKNA AKNA ENCSR929IMB signal 2 4713 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/a2ccf75d-d6bc-4077-bb75-592bde16c096/ENCFF770NFX.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AKNA AKNA ENCSR929IMB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR929IMB Signal\ track wgEncodeReg4TfChip_ENCFF770NFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF934ESI ENCSR703VGI Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years DNase signal 2 4714 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/07/237934b0-260d-4220-9dbd-53c556ba5c49/ENCFF934ESI.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR703VGI Signal\ track wgEncodeReg4Epigenetics_ENCFF934ESI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF607LKE ENCSR930CPA Peak bigBed 5 Transverse colon tissue male adult (37 years) POLR2AphosphoS5 peaks 4 4714 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/25991879-590e-4ac0-ab81-20f90f05c63f/ENCFF607LKE.bigBed\ labelFields none\ longLabel Transverse colon tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR704HNG Peak\ track wgEncodeReg4Epigenetics_ENCFF415HHB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF260IRE ENCSR930CPA Signal bigWig Transverse colon tissue male adult (37 years) POLR2AphosphoS5 ENCSR930CPA signal 2 4715 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/950a7632-35f1-47b7-be23-e919cd9a7c91/ENCFF260IRE.bigWig\ color 86,86,36\ longLabel Transverse colon tissue male adult (37 years) POLR2AphosphoS5 ENCSR930CPA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR930CPA Signal\ track wgEncodeReg4TfChip_ENCFF260IRE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF228HDN ENCSR704HNG Signal bigWig Natural killer cell male adult 21 years DNase signal 2 4716 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/d9b20db8-00a1-4692-aedc-75ffeec298e0/ENCFF228HDN.bigWig\ color 6,218,147\ longLabel Natural killer cell male adult 21 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR704HNG Signal\ track wgEncodeReg4Epigenetics_ENCFF228HDN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF685VRG ENCSR930SOT Peak bigBed 5 Brain organoid female embryo (5 days): 30 days post differentiation CTCF peaks 4 4716 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/fe18a727-ed14-40df-a5d7-1d0806efedfa/ENCFF685VRG.bigBed\ labelFields none\ longLabel Brain organoid female embryo (5 days): 30 days post differentiation CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR704VZY Peak\ track wgEncodeReg4Epigenetics_ENCFF937RTJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF305GTF ENCSR930SOT Signal bigWig Brain organoid female embryo (5 days): 30 days post differentiation CTCF ENCSR930SOT signal 2 4717 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4ec6a5da-6e0e-4f16-be75-b58f8aa1338f/ENCFF305GTF.bigWig\ color 155,155,18\ longLabel Brain organoid female embryo (5 days): 30 days post differentiation CTCF ENCSR930SOT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR930SOT Signal\ track wgEncodeReg4TfChip_ENCFF305GTF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF746MNC ENCSR704VZY Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 4718 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/a255f676-cf58-49a3-a950-ba27f01a7eb7/ENCFF746MNC.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR704VZY Signal\ track wgEncodeReg4Epigenetics_ENCFF746MNC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF395XLS ENCSR931HNY Peak bigBed 5 K562 NCOA1 peaks 4 4718 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/01d33f2d-d1d8-482d-aafd-0558cfbef4f5/ENCFF395XLS.bigBed\ labelFields none\ longLabel K562 NCOA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR931HNY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF395XLS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF441YYY ENCSR705BTW Peak bigBed 5 Esophagus muscularis mucosa tissue male adult 54 years H3K27ac peak 4 4719 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/314e36f8-1dfb-4747-a6dc-269fe7fc1c1b/ENCFF441YYY.bigBed\ color 181,145,0\ longLabel Esophagus muscularis mucosa tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR705BTW Peak\ track wgEncodeReg4Epigenetics_ENCFF441YYY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF510HQQ ENCSR931HNY Signal bigWig K562 NCOA1 ENCSR931HNY signal 2 4719 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/f072831a-83ab-49b6-8179-47a2d04d365f/ENCFF510HQQ.bigWig\ color 254,75,173\ longLabel K562 NCOA1 ENCSR931HNY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR931HNY Signal\ track wgEncodeReg4TfChip_ENCFF510HQQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF304TYW ENCSR705BTW Signal bigWig Esophagus muscularis mucosa tissue male adult 54 years H3K27ac signal 2 4720 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/24c0d0ff-fa6c-4e59-a6f3-e4504d508729/ENCFF304TYW.bigWig\ color 181,145,0\ longLabel Esophagus muscularis mucosa tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR705BTW Signal\ track wgEncodeReg4Epigenetics_ENCFF304TYW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF806TPY ENCSR931SYA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46 ZBTB46 peaks 4 4720 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2a886e85-740a-4fb9-ad3e-50c22c022618/ENCFF806TPY.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46 ZBTB46 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR705CNJ Peak\ track wgEncodeReg4Epigenetics_ENCFF283CCK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF693NUC ENCSR931SYA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46 ZBTB46 ENCSR931SYA signal 2 4721 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/abd0eccb-265d-4c09-8483-d4235d3ca40f/ENCFF693NUC.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB46 ZBTB46 ENCSR931SYA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR931SYA Signal\ track wgEncodeReg4TfChip_ENCFF693NUC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF077GHP ENCSR705CNJ Signal bigWig Heart tissue male embryo 72 days and male embryo 76 days DNase signal 2 4722 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/62357f30-6f2f-4593-ad52-2a976557cfd8/ENCFF077GHP.bigWig\ color 6,218,147\ longLabel Heart tissue male embryo 72 days and male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR705CNJ Signal\ track wgEncodeReg4Epigenetics_ENCFF077GHP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF602YJX ENCSR931ZOM Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451 ZNF451 peaks 4 4722 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/457fbdab-2c47-42fb-b47d-4f6705476f9e/ENCFF602YJX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451 ZNF451 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR705DNM Peak\ track wgEncodeReg4Epigenetics_ENCFF812JWS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF768DJN ENCSR931ZOM Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451 ZNF451 ENCSR931ZOM signal 2 4723 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/72b35863-64d8-4b12-8ee7-0e4b9cbf3fa0/ENCFF768DJN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF451 ZNF451 ENCSR931ZOM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR931ZOM Signal\ track wgEncodeReg4TfChip_ENCFF768DJN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF161XMB ENCSR705DNM Signal bigWig Middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 4724 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/bae46518-a094-4bbf-8641-f80ba95c08f7/ENCFF161XMB.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR705DNM Signal\ track wgEncodeReg4Epigenetics_ENCFF161XMB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF255MAF ENCSR932XBJ Peak bigBed 5 Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue male adult (87 years) CTCF peaks 4 4724 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ec3e3bd0-5968-4203-9357-2c7eb4636d02/ENCFF255MAF.bigBed\ labelFields none\ longLabel Alzheimer's disease: Cognitive impairment; middle frontal area 46 tissue male adult (87 years) CTCF peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR706IDL Peak\ track wgEncodeReg4Epigenetics_ENCFF441OBG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF261XUD ENCSR933MHJ Signal bigWig A549 KDM5A ENCSR933MHJ signal 2 4733 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/6076047f-7f0a-4f81-84bb-043bad35c3d1/ENCFF261XUD.bigWig\ color 130,163,45\ longLabel A549 KDM5A ENCSR933MHJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR933MHJ Signal\ track wgEncodeReg4TfChip_ENCFF261XUD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF080QSA ENCSR706IDL Signal bigWig Midbrain tissue male adult 78 years and male adult 84 years DNase signal 2 4734 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/6cf5f46e-5a85-4176-ae45-ab3677b01632/ENCFF080QSA.bigWig\ color 6,218,147\ longLabel Midbrain tissue male adult 78 years and male adult 84 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR706IDL Signal\ track wgEncodeReg4Epigenetics_ENCFF080QSA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF642OGE ENCSR934JDG Peak bigBed 5 MCF-7 CLOCK peaks 4 4734 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/c7ad852b-0b53-4e25-a5f7-ff188816c72f/ENCFF642OGE.bigBed\ labelFields none\ longLabel MCF-7 CLOCK peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR706XFG Peak\ track wgEncodeReg4Epigenetics_ENCFF335DHZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF783ZVX ENCSR934JDG Signal bigWig MCF-7 CLOCK ENCSR934JDG signal 2 4735 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ecb187cd-7254-46d9-91eb-747d204878ec/ENCFF783ZVX.bigWig\ color 65,171,173\ longLabel MCF-7 CLOCK ENCSR934JDG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR934JDG Signal\ track wgEncodeReg4TfChip_ENCFF783ZVX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF220KZL ENCSR706XFG Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 4736 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/66c67be6-70eb-4810-ac69-e33cdec8d4ec/ENCFF220KZL.bigWig\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR706XFG Signal\ track wgEncodeReg4Epigenetics_ENCFF220KZL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF623HQN ENCSR934NHU Peak bigBed 5 Neural cell originated from H1 MXI1 peaks 4 4736 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/f65652cf-58b8-47a5-b6d3-791d2a98503f/ENCFF623HQN.bigBed\ labelFields none\ longLabel Neural cell originated from H1 MXI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR934NHU Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF623HQN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF795FEU ENCSR709GBY Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K27ac peak 4 4737 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/d71a486c-77a1-4cc4-8ceb-0bd94acdbde4/ENCFF795FEU.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709GBY Peak\ track wgEncodeReg4Epigenetics_ENCFF795FEU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF174VYX ENCSR935GZV Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYB NFYB peaks 4 4737 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/712550bb-bbbb-47e6-8886-d6535cc17490/ENCFF174VYX.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYB NFYB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR935GZV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF174VYX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF721OCD ENCSR709GBY Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K27ac signal 2 4738 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/bb842799-2586-45e1-9e32-f0e8ee3d5896/ENCFF721OCD.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 30 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709GBY Signal\ track wgEncodeReg4Epigenetics_ENCFF721OCD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF879CAL ENCSR935GZV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYB NFYB ENCSR935GZV signal 2 4738 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/f41ff25f-1a4d-47f1-85cb-0662e3822fe2/ENCFF879CAL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFYB NFYB ENCSR935GZV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR935GZV Signal\ track wgEncodeReg4TfChip_ENCFF879CAL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF767IOF ENCSR709IYR Peak bigBed 5 Suprapubic skin tissue male adult 54 years DNase peak 4 4739 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/f8ff9e50-3929-44a0-8906-e0f1f44e9b9b/ENCFF767IOF.bigBed\ color 6,218,147\ labelFields none\ longLabel Suprapubic skin tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709IYR Peak\ track wgEncodeReg4Epigenetics_ENCFF767IOF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF162IDM ENCSR935XOT Peak bigBed 5 Tibial nerve tissue female adult (53 years) POLR2A peaks 4 4739 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/96e3defe-c13e-4b3d-951c-11a61798c9d2/ENCFF162IDM.bigBed\ labelFields none\ longLabel Tibial nerve tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR935XOT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF162IDM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF642VOM ENCSR709IYR Signal bigWig Suprapubic skin tissue male adult 54 years DNase signal 2 4740 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/2e9041a7-f041-49e2-9542-118eabec9839/ENCFF642VOM.bigWig\ color 6,218,147\ longLabel Suprapubic skin tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709IYR Signal\ track wgEncodeReg4Epigenetics_ENCFF642VOM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF015EWW ENCSR935XOT Signal bigWig Tibial nerve tissue female adult (53 years) POLR2A ENCSR935XOT signal 2 4740 160 156 0 207 205 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/97abce2e-3a40-476f-b000-17442e19e368/ENCFF015EWW.bigWig\ color 160,156,0\ longLabel Tibial nerve tissue female adult (53 years) POLR2A ENCSR935XOT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR935XOT Signal\ track wgEncodeReg4TfChip_ENCFF015EWW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF609JEI ENCSR709KME Peak bigBed 5 Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac peak 4 4741 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/af69ce72-38f6-459e-b043-c8f667f22b9f/ENCFF609JEI.bigBed\ color 181,145,0\ longLabel Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709KME Peak\ track wgEncodeReg4Epigenetics_ENCFF609JEI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF791ZXN ENCSR936JHB Peak bigBed 5 Esophagus muscularis mucosa tissue female adult (53 years) POLR2AphosphoS5 peaks 4 4741 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/d03aaeef-91a2-4872-a574-a44f6703264a/ENCFF791ZXN.bigBed\ labelFields none\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR936JHB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF791ZXN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF920IQC ENCSR709KME Signal bigWig Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac signal 2 4742 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/18daed83-544c-4d84-b4d8-699dba4625c8/ENCFF920IQC.bigWig\ color 181,145,0\ longLabel Stimulated activated naive B cell male adult 40 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709KME Signal\ track wgEncodeReg4Epigenetics_ENCFF920IQC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF085ZXF ENCSR936JHB Signal bigWig Esophagus muscularis mucosa tissue female adult (53 years) POLR2AphosphoS5 ENCSR936JHB signal 2 4742 137 135 170 196 195 212 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/54d70314-c890-45e7-9a2d-654ec250f7b9/ENCFF085ZXF.bigWig\ color 137,135,170\ longLabel Esophagus muscularis mucosa tissue female adult (53 years) POLR2AphosphoS5 ENCSR936JHB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR936JHB Signal\ track wgEncodeReg4TfChip_ENCFF085ZXF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF666GID ENCSR709PFC Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 H3K27ac peak 4 4743 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/5fbd88f3-1054-4cc5-8aca-1858d68b374a/ENCFF666GID.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709PFC Peak\ track wgEncodeReg4Epigenetics_ENCFF666GID\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF961QZM ENCSR938ETG Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF9 KLF9 peaks 4 4743 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/c5d840ef-229d-48b4-a81a-227edbb2aa15/ENCFF961QZM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF9 KLF9 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR938ETG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF961QZM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF426ZES ENCSR709PFC Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 H3K27ac signal 2 4744 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/104826f7-1749-4007-b246-100ae2d79c8e/ENCFF426ZES.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709PFC Signal\ track wgEncodeReg4Epigenetics_ENCFF426ZES\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF330NXZ ENCSR938ETG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF9 KLF9 ENCSR938ETG signal 2 4744 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/bf7629d6-0e79-41cd-8ea2-08d7e0ac7972/ENCFF330NXZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF9 KLF9 ENCSR938ETG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR938ETG Signal\ track wgEncodeReg4TfChip_ENCFF330NXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF659FAR ENCSR709PZI Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase peak 4 4745 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/09/d700c3ad-a4bb-4835-8bec-a5b81c957a86/ENCFF659FAR.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709PZI Peak\ track wgEncodeReg4Epigenetics_ENCFF659FAR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF003KCM ENCSR938VRO Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343 ZNF343 peaks 4 4745 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/7e9037dc-46d0-4cef-83c0-634316ae1c82/ENCFF003KCM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343 ZNF343 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR938VRO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF003KCM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF460RKR ENCSR709PZI Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase signal 2 4746 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/09/9cbb7577-1d20-4fe8-b2a0-e8b382f794d5/ENCFF460RKR.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 88 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709PZI Signal\ track wgEncodeReg4Epigenetics_ENCFF460RKR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF630FCT ENCSR938VRO Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343 ZNF343 ENCSR938VRO signal 2 4746 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/b4d73907-4341-4b33-82fb-0412748ab591/ENCFF630FCT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF343 ZNF343 ENCSR938VRO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR938VRO Signal\ track wgEncodeReg4TfChip_ENCFF630FCT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF419LSP ENCSR709QRD Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 4747 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/8cf59154-f4a9-4f86-9076-ca338b943975/ENCFF419LSP.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709QRD Peak\ track wgEncodeReg4Epigenetics_ENCFF419LSP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF791HBV ENCSR939CDD Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B ARID4B peaks 4 4747 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/5f737a63-3249-4cd3-986a-2b381ec07286/ENCFF791HBV.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B ARID4B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR939CDD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF791HBV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF729BQI ENCSR709QRD Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 4748 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/f3d8d90a-d795-4747-88fb-e28df5be1ae2/ENCFF729BQI.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709QRD Signal\ track wgEncodeReg4Epigenetics_ENCFF729BQI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF831PIW ENCSR939CDD Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B ARID4B ENCSR939CDD signal 2 4748 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/0b723025-9342-4ff2-97fd-149d456af2db/ENCFF831PIW.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ARID4B ARID4B ENCSR939CDD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR939CDD Signal\ track wgEncodeReg4TfChip_ENCFF831PIW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF145ZYK ENCSR709YRE Peak bigBed 5 T-helper 17 cell male adult 42 years DNase peak 4 4749 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/5323da70-928c-46aa-a5f0-94bd3b9fbd83/ENCFF145ZYK.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 17 cell male adult 42 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709YRE Peak\ track wgEncodeReg4Epigenetics_ENCFF145ZYK\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF065JSZ ENCSR939FGB Peak bigBed 5 Breast epithelium tissue female adult (53 years) POLR2AphosphoS5 peaks 4 4749 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/bde9057b-0774-40ba-a65f-942ed7484f22/ENCFF065JSZ.bigBed\ labelFields none\ longLabel Breast epithelium tissue female adult (53 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR939FGB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF065JSZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF940NBY ENCSR709YRE Signal bigWig T-helper 17 cell male adult 42 years DNase signal 2 4750 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a8df6be6-6b97-4f0f-bb18-4e76f4fe140f/ENCFF940NBY.bigWig\ color 6,218,147\ longLabel T-helper 17 cell male adult 42 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR709YRE Signal\ track wgEncodeReg4Epigenetics_ENCFF940NBY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF426VPL ENCSR939FGB Signal bigWig Breast epithelium tissue female adult (53 years) POLR2AphosphoS5 ENCSR939FGB signal 2 4750 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/e6bb1764-b43e-4dc0-b45d-3fc148d115e8/ENCFF426VPL.bigWig\ color 65,171,173\ longLabel Breast epithelium tissue female adult (53 years) POLR2AphosphoS5 ENCSR939FGB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR939FGB Signal\ track wgEncodeReg4TfChip_ENCFF426VPL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF327UXV ENCSR710SMN Peak bigBed 5 Heart right ventricle tissue female adult 58 years ATAC peak 4 4751 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/0064273e-278c-40af-b4cb-8a8be2f6cf94/ENCFF327UXV.bigBed\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 58 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR710SMN Peak\ track wgEncodeReg4Epigenetics_ENCFF327UXV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF084BYB ENCSR940EZR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B ZNF280B peaks 4 4751 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/890a94ef-d0df-470f-b76c-d426bb3e31c3/ENCFF084BYB.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B ZNF280B peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR940EZR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF084BYB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF347YOH ENCSR710SMN Signal bigWig Heart right ventricle tissue female adult 58 years ATAC signal 2 4752 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/65444ae8-7443-4d6a-b395-feac2c9c5ead/ENCFF347YOH.bigWig\ color 2,199,185\ longLabel Heart right ventricle tissue female adult 58 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR710SMN Signal\ track wgEncodeReg4Epigenetics_ENCFF347YOH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF436KVY ENCSR940EZR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B ZNF280B ENCSR940EZR signal 2 4752 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/71b90a50-e1a1-4bd3-88b8-dc8f217909d4/ENCFF436KVY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B ZNF280B ENCSR940EZR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR940EZR Signal\ track wgEncodeReg4TfChip_ENCFF436KVY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF464KWH ENCSR710SZV Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years H3K4me3 peak 4 4753 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/f637545a-849a-40c1-9293-147145d006e2/ENCFF464KWH.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR710SZV Peak\ track wgEncodeReg4Epigenetics_ENCFF464KWH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF757JNN ENCSR940MHE Peak bigBed 5 MCF-7 MBD2 peaks 4 4753 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/abd2a9ba-a843-49c4-897f-863ad887f18f/ENCFF757JNN.bigBed\ labelFields none\ longLabel MCF-7 MBD2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR940MHE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF757JNN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF526YYM ENCSR710SZV Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years H3K4me3 signal 2 4754 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/cac2c8c0-9334-441d-8c25-eb49aced0248/ENCFF526YYM.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR710SZV Signal\ track wgEncodeReg4Epigenetics_ENCFF526YYM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF011KML ENCSR940MHE Signal bigWig MCF-7 MBD2 ENCSR940MHE signal 2 4754 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/7c98be26-5823-4d64-899c-ce54d737ee53/ENCFF011KML.bigWig\ color 65,171,173\ longLabel MCF-7 MBD2 ENCSR940MHE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR940MHE Signal\ track wgEncodeReg4TfChip_ENCFF011KML\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF572RFF ENCSR711AQM Peak bigBed 5 Suppressor macrophage male adult 21 years and male adult 24 years DNase peak 4 4755 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/7fd42f6a-63b3-40d9-9e75-9c8c21783e4e/ENCFF572RFF.bigBed\ color 6,218,147\ labelFields none\ longLabel Suppressor macrophage male adult 21 years and male adult 24 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR711AQM Peak\ track wgEncodeReg4Epigenetics_ENCFF572RFF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF224LZF ENCSR944LSA Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DBP DBP peaks 4 4755 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/e7281ab7-cfc3-4326-a5a2-edc2ad64f925/ENCFF224LZF.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DBP DBP peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR944LSA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF224LZF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF469BIK ENCSR711AQM Signal bigWig Suppressor macrophage male adult 21 years and male adult 24 years DNase signal 2 4756 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/16/596e4058-641a-4e93-820d-9c404d9d55a7/ENCFF469BIK.bigWig\ color 6,218,147\ longLabel Suppressor macrophage male adult 21 years and male adult 24 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR711AQM Signal\ track wgEncodeReg4Epigenetics_ENCFF469BIK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF219OBL ENCSR944LSA Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DBP DBP ENCSR944LSA signal 2 4756 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/04b9b027-6516-4fbd-8a77-d0f55abe71fe/ENCFF219OBL.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DBP DBP ENCSR944LSA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR944LSA Signal\ track wgEncodeReg4TfChip_ENCFF219OBL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF814BGS ENCSR712PYJ Peak bigBed 5 Ovary tissue female adult 30 years DNase peak 4 4757 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/a583679d-6fd3-40f8-a1e5-882062105da3/ENCFF814BGS.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712PYJ Peak\ track wgEncodeReg4Epigenetics_ENCFF814BGS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF736ZYW ENCSR945NFL Peak bigBed 5 SK-N-SH USF2 peaks 4 4757 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/695a5445-44d3-497a-aa89-1fe02a294bd6/ENCFF736ZYW.bigBed\ labelFields none\ longLabel SK-N-SH USF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR945NFL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF736ZYW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF406GUT ENCSR712PYJ Signal bigWig Ovary tissue female adult 30 years DNase signal 2 4758 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/2c557b97-796b-4777-88f6-b575b98eb23d/ENCFF406GUT.bigWig\ color 6,218,147\ longLabel Ovary tissue female adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712PYJ Signal\ track wgEncodeReg4Epigenetics_ENCFF406GUT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF838KGD ENCSR945NFL Signal bigWig SK-N-SH USF2 ENCSR945NFL signal 2 4758 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/659e0218-7f37-4e3b-9ce6-a6a3383d0e14/ENCFF838KGD.bigWig\ color 155,155,18\ longLabel SK-N-SH USF2 ENCSR945NFL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR945NFL Signal\ track wgEncodeReg4TfChip_ENCFF838KGD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF379FJH ENCSR712YCY Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 20 years H3K4me3 peak 4 4759 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/64713a56-5627-4214-a78c-2baae74c41a4/ENCFF379FJH.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta T cell male adult 20 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712YCY Peak\ track wgEncodeReg4Epigenetics_ENCFF379FJH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF068FIG ENCSR945NSF Peak bigBed 5 HepG2 PCBP2 peaks 4 4759 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2018/01/10/f468519b-d20d-452a-bf15-d7f2f003035d/ENCFF068FIG.bigBed\ labelFields none\ longLabel HepG2 PCBP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR945NSF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF068FIG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF059IYG ENCSR712YCY Signal bigWig CD4-positive, alpha-beta T cell male adult 20 years H3K4me3 signal 2 4760 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/b5268774-5c6b-4096-98fa-afc3813dd8a5/ENCFF059IYG.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta T cell male adult 20 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712YCY Signal\ track wgEncodeReg4Epigenetics_ENCFF059IYG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF707DIF ENCSR945NSF Signal bigWig HepG2 PCBP2 ENCSR945NSF signal 2 4760 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2018/01/09/6a889469-bfa3-4d09-92d3-048fa816ff2b/ENCFF707DIF.bigWig\ color 137,152,82\ longLabel HepG2 PCBP2 ENCSR945NSF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR945NSF Signal\ track wgEncodeReg4TfChip_ENCFF707DIF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF642TPJ ENCSR712YZE Peak bigBed 5 Naive B cell female adult 39 years H3K4me3 peak 4 4761 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/74581f8f-51d9-45d7-bb69-3267efd753f6/ENCFF642TPJ.bigBed\ color 255,0,0\ longLabel Naive B cell female adult 39 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712YZE Peak\ track wgEncodeReg4Epigenetics_ENCFF642TPJ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF343YSL ENCSR945QEW Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121 ZNF121 peaks 4 4761 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/da24f0ff-10dd-4f4f-afda-32d5978ad016/ENCFF343YSL.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121 ZNF121 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR945QEW Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF343YSL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF837WOY ENCSR712YZE Signal bigWig Naive B cell female adult 39 years H3K4me3 signal 2 4762 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/518d1bca-4371-4c6e-871a-9e0624b9f997/ENCFF837WOY.bigWig\ color 255,0,0\ longLabel Naive B cell female adult 39 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712YZE Signal\ track wgEncodeReg4Epigenetics_ENCFF837WOY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF588VCN ENCSR945QEW Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121 ZNF121 ENCSR945QEW signal 2 4762 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2a9343b0-7943-4d12-ba1b-f7f93be298ad/ENCFF588VCN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF121 ZNF121 ENCSR945QEW signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR945QEW Signal\ track wgEncodeReg4TfChip_ENCFF588VCN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF469JKY ENCSR712ZRY Peak bigBed 5 GM19463 ATAC peak 4 4763 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/326f78f4-539c-4332-8a2e-ac037d5c7d5f/ENCFF469JKY.bigBed\ color 2,199,185\ longLabel GM19463 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712ZRY Peak\ track wgEncodeReg4Epigenetics_ENCFF469JKY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF777JCR ENCSR946BXO Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 peaks 4 4763 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/13/14fb450e-087c-4014-8c59-29a650a19f73/ENCFF777JCR.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946BXO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF777JCR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF139KXZ ENCSR712ZRY Signal bigWig GM19463 ATAC signal 2 4764 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/14/0b80acca-8140-446d-838d-7db655b098b9/ENCFF139KXZ.bigWig\ color 2,199,185\ longLabel GM19463 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR712ZRY Signal\ track wgEncodeReg4Epigenetics_ENCFF139KXZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF431CIQ ENCSR946BXO Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 ENCSR946BXO signal 2 4764 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/13/22f72a8c-22c7-4826-8795-c2798fd9a915/ENCFF431CIQ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens BRCA1 BRCA1 ENCSR946BXO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946BXO Signal\ track wgEncodeReg4TfChip_ENCFF431CIQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF998LHW ENCSR713KNQ Peak bigBed 5 Aorta tissue female adult 41 years DNase peak 4 4765 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/56c8fd2b-1b3a-4fb2-aa84-f42968254603/ENCFF998LHW.bigBed\ color 6,218,147\ labelFields none\ longLabel Aorta tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713KNQ Peak\ track wgEncodeReg4Epigenetics_ENCFF998LHW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF193LJV ENCSR946MNG Peak bigBed 5 Prostate gland tissue male adult (37 years) CTCF peaks 4 4765 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/b124755b-6ccb-4b01-9898-132f09c2a332/ENCFF193LJV.bigBed\ labelFields none\ longLabel Prostate gland tissue male adult (37 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946MNG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF193LJV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF660OZI ENCSR713KNQ Signal bigWig Aorta tissue female adult 41 years DNase signal 2 4766 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/80c4a141-77f0-44b6-baed-2aa043fdb5b0/ENCFF660OZI.bigWig\ color 6,218,147\ longLabel Aorta tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713KNQ Signal\ track wgEncodeReg4Epigenetics_ENCFF660OZI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF837DCK ENCSR946MNG Signal bigWig Prostate gland tissue male adult (37 years) CTCF ENCSR946MNG signal 2 4766 140 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/4123dc60-0983-4c47-bb3c-5fcc419d4c99/ENCFF837DCK.bigWig\ color 140,140,140\ longLabel Prostate gland tissue male adult (37 years) CTCF ENCSR946MNG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946MNG Signal\ track wgEncodeReg4TfChip_ENCFF837DCK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF777TNC ENCSR713SXF Peak bigBed 5 Cardiac muscle cell originated from RUES2 CTCF peak 4 4767 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/b231613d-42a9-4cbc-901f-3cc9c107de5c/ENCFF777TNC.bigBed\ color 0,176,240\ labelFields none\ longLabel Cardiac muscle cell originated from RUES2 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713SXF Peak\ track wgEncodeReg4Epigenetics_ENCFF777TNC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF492GSH ENCSR946PKH Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678 ZNF678 peaks 4 4767 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/5b688743-2317-4d36-b264-ebec235f5917/ENCFF492GSH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678 ZNF678 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946PKH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF492GSH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF466BIT ENCSR713SXF Signal bigWig Cardiac muscle cell originated from RUES2 CTCF signal 2 4768 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/acba7eab-ff07-4afb-bd5e-49bb03b2b860/ENCFF466BIT.bigWig\ color 0,176,240\ longLabel Cardiac muscle cell originated from RUES2 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713SXF Signal\ track wgEncodeReg4Epigenetics_ENCFF466BIT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF105PJG ENCSR946PKH Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678 ZNF678 ENCSR946PKH signal 2 4768 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/87905909-3190-4fef-8831-650ee7d934b5/ENCFF105PJG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF678 ZNF678 ENCSR946PKH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946PKH Signal\ track wgEncodeReg4TfChip_ENCFF105PJG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF071KOB ENCSR713YDD Peak bigBed 5 Pancreas tissue female adult 59 years H3K4me3 peak 4 4769 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/905769fb-caf9-4088-b9b2-ade53f11222b/ENCFF071KOB.bigBed\ color 255,0,0\ longLabel Pancreas tissue female adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713YDD Peak\ track wgEncodeReg4Epigenetics_ENCFF071KOB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF667RFH ENCSR946RZN Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP2 SP2 peaks 4 4769 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/82b0fcfe-4728-4182-b32d-721dffc07d1f/ENCFF667RFH.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP2 SP2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946RZN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF667RFH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF083ENU ENCSR713YDD Signal bigWig Pancreas tissue female adult 59 years H3K4me3 signal 2 4770 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/5d69bba8-9275-4032-a882-4d46773cd4a0/ENCFF083ENU.bigWig\ color 255,0,0\ longLabel Pancreas tissue female adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713YDD Signal\ track wgEncodeReg4Epigenetics_ENCFF083ENU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF166YMY ENCSR946RZN Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP2 SP2 ENCSR946RZN signal 2 4770 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/1c926aa2-84f6-4568-a51d-94382ea3afa7/ENCFF166YMY.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP2 SP2 ENCSR946RZN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946RZN Signal\ track wgEncodeReg4TfChip_ENCFF166YMY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF722TQP ENCSR713ZYF Peak bigBed 5 Multiple sclerosis naive B cell H3K4me3 peak 4 4771 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a8eed5c5-1d3e-4ed2-9dbd-c8842eb323fb/ENCFF722TQP.bigBed\ color 255,0,0\ longLabel Multiple sclerosis naive B cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713ZYF Peak\ track wgEncodeReg4Epigenetics_ENCFF722TQP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF372VWH ENCSR946WBN Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUN JUN peaks 4 4771 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/2ad78d9b-07ed-4382-980f-0597a80f2fe4/ENCFF372VWH.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUN JUN peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946WBN Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF372VWH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF022RWR ENCSR713ZYF Signal bigWig Multiple sclerosis naive B cell H3K4me3 signal 2 4772 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/a4c22359-d714-4d9b-9603-2ee90ba67fe7/ENCFF022RWR.bigWig\ color 255,0,0\ longLabel Multiple sclerosis naive B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR713ZYF Signal\ track wgEncodeReg4Epigenetics_ENCFF022RWR\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF612EKJ ENCSR946WBN Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUN JUN ENCSR946WBN signal 2 4772 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/01/07/7a15db1e-d4e0-4f64-83bb-4a8f67201ee9/ENCFF612EKJ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens JUN JUN ENCSR946WBN signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR946WBN Signal\ track wgEncodeReg4TfChip_ENCFF612EKJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF467ECW ENCSR714DIF Peak bigBed 5 Mesendoderm originated from H1 DNase peak 4 4773 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/6a44208a-0821-49ab-ad20-5eddc9d0a859/ENCFF467ECW.bigBed\ color 6,218,147\ labelFields none\ longLabel Mesendoderm originated from H1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR714DIF Peak\ track wgEncodeReg4Epigenetics_ENCFF467ECW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF983WKN ENCSR947PJZ Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1 HIVEP1 peaks 4 4773 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/27d64fb2-1e74-4875-b455-098aaa2b6cc6/ENCFF983WKN.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1 HIVEP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR947PJZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF983WKN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF100WFU ENCSR714DIF Signal bigWig Mesendoderm originated from H1 DNase signal 2 4774 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/1c27c5e0-061f-474b-ac36-fc7bf9ac5be4/ENCFF100WFU.bigWig\ color 6,218,147\ longLabel Mesendoderm originated from H1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR714DIF Signal\ track wgEncodeReg4Epigenetics_ENCFF100WFU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF142VTP ENCSR947PJZ Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1 HIVEP1 ENCSR947PJZ signal 2 4774 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/9bf92be4-666d-4087-924b-fbfffa349580/ENCFF142VTP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens HIVEP1 HIVEP1 ENCSR947PJZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR947PJZ Signal\ track wgEncodeReg4TfChip_ENCFF142VTP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF870CPU ENCSR714KWW Peak bigBed 5 CD4-positive, alpha-beta T cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K4me3 peak 4 4775 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/2dc882f1-d253-41ae-8c1b-c4987fe5a7f7/ENCFF870CPU.bigBed\ color 255,0,0\ longLabel CD4-positive, alpha-beta T cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR948VFL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF771OHZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF581DIL ENCSR714SGY Signal bigWig Muscle of trunk tissue female embryo 115 days H3K4me3 signal 2 4780 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/9867a018-f5dc-4a3d-bfa2-f193d5e21b3b/ENCFF581DIL.bigWig\ color 255,0,0\ longLabel Muscle of trunk tissue female embryo 115 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR714SGY Signal\ track wgEncodeReg4Epigenetics_ENCFF581DIL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF957MXZ ENCSR948VFL Signal bigWig K562 IKZF1 ENCSR948VFL signal 2 4780 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/07f3fe88-5c64-48a9-be27-9d19da09c105/ENCFF957MXZ.bigWig\ color 254,75,173\ longLabel K562 IKZF1 ENCSR948VFL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR948VFL Signal\ track wgEncodeReg4TfChip_ENCFF957MXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF251HIQ ENCSR714TJD Peak bigBed 5 A673 H3K27ac peak 4 4781 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/5572506d-442d-42de-971d-589d939b002f/ENCFF251HIQ.bigBed\ color 181,145,0\ longLabel A673 H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR949NVY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF267NLX\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF213BSP ENCSR714TJD Signal bigWig A673 H3K27ac signal 2 4782 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/269d5814-a78c-4877-ad9e-e02c9f6f806d/ENCFF213BSP.bigWig\ color 181,145,0\ longLabel A673 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR714TJD Signal\ track wgEncodeReg4Epigenetics_ENCFF213BSP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF900SQF ENCSR949NVY Signal bigWig K562 ZNF639 ENCSR949NVY signal 2 4782 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/02d27a8d-3951-4f6e-9912-9b03eab0309c/ENCFF900SQF.bigWig\ color 254,75,173\ longLabel K562 ZNF639 ENCSR949NVY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR949NVY Signal\ track wgEncodeReg4TfChip_ENCFF900SQF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF554VXE ENCSR715KGX Peak bigBed 5 Adrenal gland tissue male embryo 97 days H3K4me3 peak 4 4783 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/59fd1f0e-b776-408c-9af1-e164f19eb8e4/ENCFF554VXE.bigBed\ color 255,0,0\ longLabel Adrenal gland tissue male embryo 97 days H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR949OEV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF106ELT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF678USC ENCSR715KGX Signal bigWig Adrenal gland tissue male embryo 97 days H3K4me3 signal 2 4784 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/c125f973-bdc1-42ff-b890-e969518138e7/ENCFF678USC.bigWig\ color 255,0,0\ longLabel Adrenal gland tissue male embryo 97 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR715KGX Signal\ track wgEncodeReg4Epigenetics_ENCFF678USC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF829RLG ENCSR949OEV Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFY ZFY ENCSR949OEV signal 2 4784 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/e8536c8d-53dc-46f6-bda8-128f0c8e8761/ENCFF829RLG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFY ZFY ENCSR949OEV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR949OEV Signal\ track wgEncodeReg4TfChip_ENCFF829RLG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF242XAP ENCSR715TMH Peak bigBed 5 T-cell female adult 32 years DNase peak 4 4785 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/ed8b2412-8c78-4d0d-b9bf-c54c6edf2576/ENCFF242XAP.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 32 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR715TMH Peak\ track wgEncodeReg4Epigenetics_ENCFF242XAP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF777AIW ENCSR950ACO Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF785 ZNF785 peaks 4 4785 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/e0212d88-02dc-4baa-8d14-1773532c777c/ENCFF777AIW.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF785 ZNF785 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR950ACO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF777AIW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF142VCT ENCSR715TMH Signal bigWig T-cell female adult 32 years DNase signal 2 4786 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/4bf9af0a-002f-4620-a785-8028df107aba/ENCFF142VCT.bigWig\ color 6,218,147\ longLabel T-cell female adult 32 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR715TMH Signal\ track wgEncodeReg4Epigenetics_ENCFF142VCT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF364LNI ENCSR950ACO Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF785 ZNF785 ENCSR950ACO signal 2 4786 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/856ae569-9dda-448d-92b4-657d1bf31997/ENCFF364LNI.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF785 ZNF785 ENCSR950ACO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR950ACO Signal\ track wgEncodeReg4TfChip_ENCFF364LNI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF528HYV ENCSR716FUH Peak bigBed 5 Thyroid gland tissue female adult 53 years H3K27ac peak 4 4787 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/3dd3901e-8cc6-4d39-ba84-7f9eedba9051/ENCFF528HYV.bigBed\ color 181,145,0\ longLabel Thyroid gland tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR716FUH Peak\ track wgEncodeReg4Epigenetics_ENCFF528HYV\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF706IUS ENCSR950CUQ Peak bigBed 5 Spleen tissue male adult (37 years) POLR2AphosphoS5 peaks 4 4787 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/65648d11-6ee1-494b-86e7-73b1d31355bd/ENCFF706IUS.bigBed\ labelFields none\ longLabel Spleen tissue male adult (37 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR950CUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF706IUS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF050PLB ENCSR716FUH Signal bigWig Thyroid gland tissue female adult 53 years H3K27ac signal 2 4788 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/5863b80a-b3aa-470e-bd97-fb1d692f7340/ENCFF050PLB.bigWig\ color 181,145,0\ longLabel Thyroid gland tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR716FUH Signal\ track wgEncodeReg4Epigenetics_ENCFF050PLB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF943QGW ENCSR950CUQ Signal bigWig Spleen tissue male adult (37 years) POLR2AphosphoS5 ENCSR950CUQ signal 2 4788 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/34c7073e-d433-46dd-9fbc-7b933df1a8e4/ENCFF943QGW.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (37 years) POLR2AphosphoS5 ENCSR950CUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR950CUQ Signal\ track wgEncodeReg4TfChip_ENCFF943QGW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF203TCV ENCSR716YIT Peak bigBed 5 Kidney tissue male adult 67 years H3K4me3 peak 4 4789 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/34004e71-d8eb-42f0-824a-c8c3d158267b/ENCFF203TCV.bigBed\ color 255,0,0\ longLabel Kidney tissue male adult 67 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR950FIL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF990GUQ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF729ZPF ENCSR716YIT Signal bigWig Kidney tissue male adult 67 years H3K4me3 signal 2 4790 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5955b8c6-366b-4aa7-b510-6c0f522e0dee/ENCFF729ZPF.bigWig\ color 255,0,0\ longLabel Kidney tissue male adult 67 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR716YIT Signal\ track wgEncodeReg4Epigenetics_ENCFF729ZPF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF809TGF ENCSR950FIL Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC2 HDAC2 ENCSR950FIL signal 2 4790 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/6bc6e61f-3c28-4bd6-88e3-33d09ca575a4/ENCFF809TGF.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC2 HDAC2 ENCSR950FIL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR950FIL Signal\ track wgEncodeReg4TfChip_ENCFF809TGF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF304UFH ENCSR716ZJH Peak bigBed 5 H9 stably expressing HES5 H3K4me3 peak 4 4791 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/1d8ba76e-ab0e-4fbd-a1e2-8a5f55f14075/ENCFF304UFH.bigBed\ color 255,0,0\ longLabel H9 stably expressing HES5 H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR953DVM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF985IKY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF347MTT ENCSR717AJD Signal bigWig Temporal lobe tissue male adult 81 years H3K4me3 signal 2 4794 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/0d0b4296-d6c7-4369-b1ce-d2473dba4e19/ENCFF347MTT.bigWig\ color 255,0,0\ longLabel Temporal lobe tissue male adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR717AJD Signal\ track wgEncodeReg4Epigenetics_ENCFF347MTT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF475BWW ENCSR953DVM Signal bigWig K562 E2F8 ENCSR953DVM signal 2 4794 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/2cbdf386-69df-443f-ab28-873943bf899a/ENCFF475BWW.bigWig\ color 254,75,173\ longLabel K562 E2F8 ENCSR953DVM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR953DVM Signal\ track wgEncodeReg4TfChip_ENCFF475BWW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF472DYZ ENCSR717BBR Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue male adult 90 or above years DNase peak 4 4795 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/ab1ae2ec-92cf-4ae1-87c1-6308d6872f68/ENCFF472DYZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue male adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR953MMC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF603QUY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF142AFQ ENCSR717HIA Signal bigWig Placenta tissue male embryo 16 weeks H3K27ac signal 2 4798 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/b9b8de48-1570-42e1-82b6-ecce383413db/ENCFF142AFQ.bigWig\ color 181,145,0\ longLabel Placenta tissue male embryo 16 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR717HIA Signal\ track wgEncodeReg4Epigenetics_ENCFF142AFQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF597RGZ ENCSR953MMC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H4 ZC3H4 ENCSR953MMC signal 2 4798 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2391b343-7162-421d-bdcb-ee3e9f2ad783/ENCFF597RGZ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H4 ZC3H4 ENCSR953MMC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR953MMC Signal\ track wgEncodeReg4TfChip_ENCFF597RGZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF621AVZ ENCSR718AAB Peak bigBed 5 Natural killer cell male adult 37 years DNase peak 4 4799 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/01218e98-e616-4ff8-80ae-93a41ad74d9c/ENCFF621AVZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Natural killer cell male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR718AAB Peak\ track wgEncodeReg4Epigenetics_ENCFF621AVZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF890JFC ENCSR954KIC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT8 KAT8 peaks 4 4799 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/3f33f57e-57e7-4e8b-bbe3-1b98675ded47/ENCFF890JFC.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT8 KAT8 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR954KIC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF890JFC\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF463QOD ENCSR718AAB Signal bigWig Natural killer cell male adult 37 years DNase signal 2 4800 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/4e6f6499-e084-4776-a6cb-e61b5c4a2964/ENCFF463QOD.bigWig\ color 6,218,147\ longLabel Natural killer cell male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR718AAB Signal\ track wgEncodeReg4Epigenetics_ENCFF463QOD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF595KAV ENCSR954KIC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT8 KAT8 ENCSR954KIC signal 2 4800 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/90a3505b-55de-4ba1-940a-4d1356247396/ENCFF595KAV.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KAT8 KAT8 ENCSR954KIC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR954KIC Signal\ track wgEncodeReg4TfChip_ENCFF595KAV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF689EGT ENCSR718BTD Peak bigBed 5 Vagina tissue female adult 53 years H3K27ac peak 4 4801 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/0c30d8ab-8a60-4898-a26a-70a4fdef6d43/ENCFF689EGT.bigBed\ color 181,145,0\ longLabel Vagina tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR718HWW Peak\ track wgEncodeReg4Epigenetics_ENCFF412IPR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF204HWS ENCSR955BIB Peak bigBed 5 Thyroid gland tissue female adult (51 years) CTCF peaks 4 4803 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/eadfea7f-3871-4878-85fa-96c92d2a7cb1/ENCFF204HWS.bigBed\ labelFields none\ longLabel Thyroid gland tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR955BIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF204HWS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF568OPL ENCSR718HWW Signal bigWig Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads ATAC signal 2 4804 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/da5b3ba0-df43-4f7f-b6a4-46c59c747878/ENCFF568OPL.bigWig\ color 2,199,185\ longLabel Activated CD8-positive, alpha-beta T cell male adult 21 years treated with anti-CD3 and anti-CD28 coated beads ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR718HWW Signal\ track wgEncodeReg4Epigenetics_ENCFF568OPL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF397CJU ENCSR955BIB Signal bigWig Thyroid gland tissue female adult (51 years) CTCF ENCSR955BIB signal 2 4804 27 119 58 141 187 156 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/7ad99101-1cf5-49ac-a1b4-a0e22216d530/ENCFF397CJU.bigWig\ color 27,119,58\ longLabel Thyroid gland tissue female adult (51 years) CTCF ENCSR955BIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR955BIB Signal\ track wgEncodeReg4TfChip_ENCFF397CJU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF967KZC ENCSR718JUS Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak 4 4805 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/25c1777d-c12e-4193-802e-ed1ecebb6d5e/ENCFF967KZC.bigBed\ color 255,0,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR957LDM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF284DKY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF781HVS ENCSR720DYZ Signal bigWig Basal cell carcinoma skin epidermis tissue male adult 77 years H3K4me3 signal 2 4812 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/031ac8c9-709e-414c-bd6c-73072fd6f515/ENCFF781HVS.bigWig\ color 255,0,0\ longLabel Basal cell carcinoma skin epidermis tissue male adult 77 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR720DYZ Signal\ track wgEncodeReg4Epigenetics_ENCFF781HVS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF753EQS ENCSR957LDM Signal bigWig K562 TRIM24 ENCSR957LDM signal 2 4812 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/5bb28d15-786a-410f-9b1b-6213414ca849/ENCFF753EQS.bigWig\ color 254,75,173\ longLabel K562 TRIM24 ENCSR957LDM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR957LDM Signal\ track wgEncodeReg4TfChip_ENCFF753EQS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF227MIQ ENCSR720FVJ Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak 4 4813 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/5553ab1b-1a3c-4aac-8cfa-fa5365ce228b/ENCFF227MIQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR957UPE Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF457ZGY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF456EHL ENCSR720FVJ Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal 2 4814 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/8bc1b462-b215-42bc-88be-897467416e55/ENCFF456EHL.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR720FVJ Signal\ track wgEncodeReg4Epigenetics_ENCFF456EHL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF695EYC ENCSR957UPE Signal bigWig Alzheimer's disease; middle frontal area 46 tissue female adult (89 years) CTCF ENCSR957UPE signal 2 4814 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/fd070bea-c285-4843-9021-4600c616c9ed/ENCFF695EYC.bigWig\ color 155,155,18\ longLabel Alzheimer's disease; middle frontal area 46 tissue female adult (89 years) CTCF ENCSR957UPE signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR957UPE Signal\ track wgEncodeReg4TfChip_ENCFF695EYC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF522DDQ ENCSR720TCN Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase peak 4 4815 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/c27de912-4ddc-441f-b11a-3daf5fc43162/ENCFF522DDQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR720USO Peak\ track wgEncodeReg4Epigenetics_ENCFF979KAF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF657OXY ENCSR959BQO Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF700 ZNF700 peaks 4 4817 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/d3e726e0-c681-42ac-9caf-2c8fbafac04b/ENCFF657OXY.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF700 ZNF700 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959BQO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF657OXY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF310UCW ENCSR720USO Signal bigWig Prostate gland tissue male adult 37 years CTCF signal 2 4818 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/9e11b100-89d3-4255-b168-585e5d801c00/ENCFF310UCW.bigWig\ color 0,176,240\ longLabel Prostate gland tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR720USO Signal\ track wgEncodeReg4Epigenetics_ENCFF310UCW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF645DBZ ENCSR959BQO Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF700 ZNF700 ENCSR959BQO signal 2 4818 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/df685302-5708-402f-874a-60865e7ab78b/ENCFF645DBZ.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF700 ZNF700 ENCSR959BQO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959BQO Signal\ track wgEncodeReg4TfChip_ENCFF645DBZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF974WWY ENCSR720WUX Peak bigBed 5 Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 peak 4 4819 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/afa00e62-f716-473b-8959-50591470ded5/ENCFF974WWY.bigBed\ color 255,0,0\ longLabel Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959COF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF916WXO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF302CQX ENCSR720WUX Signal bigWig Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 signal 2 4820 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/413667b1-82b7-4923-9379-cae2dcb2334e/ENCFF302CQX.bigWig\ color 255,0,0\ longLabel Stimulated activated naive B cell female adult 39 years treated with 1 μg/mL anti-CD40 for 72 hours, 100 ng/mL Interleukin-4 for 72 hours, 10 μg/mL anti-IgM for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR720WUX Signal\ track wgEncodeReg4Epigenetics_ENCFF302CQX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF374FHE ENCSR959COF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB10 ZBTB10 ENCSR959COF signal 2 4820 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/2d274ef6-7865-4414-b2cc-5de3e43afc70/ENCFF374FHE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB10 ZBTB10 ENCSR959COF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959COF Signal\ track wgEncodeReg4TfChip_ENCFF374FHE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF219LPW ENCSR721AHD Peak bigBed 5 Sigmoid colon tissue male adult 37 years CTCF peak 4 4821 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/cb35a1ef-4598-4c26-87d7-b179a239118f/ENCFF219LPW.bigBed\ color 0,176,240\ labelFields none\ longLabel Sigmoid colon tissue male adult 37 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR721AHD Peak\ track wgEncodeReg4Epigenetics_ENCFF219LPW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF892EHZ ENCSR959OMS Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAP130 SAP130 peaks 4 4821 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/4c2ab8bc-ac67-46ec-bb8f-7a1af18da6af/ENCFF892EHZ.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAP130 SAP130 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959OMS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF892EHZ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF460ECX ENCSR721AHD Signal bigWig Sigmoid colon tissue male adult 37 years CTCF signal 2 4822 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/1eb69051-0a98-486c-83bb-aeb8e3a3adcc/ENCFF460ECX.bigWig\ color 0,176,240\ longLabel Sigmoid colon tissue male adult 37 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR721AHD Signal\ track wgEncodeReg4Epigenetics_ENCFF460ECX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF088XUG ENCSR959OMS Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAP130 SAP130 ENCSR959OMS signal 2 4822 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/c0a5df4a-40da-462a-8162-6fbc3d28ddbd/ENCFF088XUG.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SAP130 SAP130 ENCSR959OMS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959OMS Signal\ track wgEncodeReg4TfChip_ENCFF088XUG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF985PHG ENCSR721DFB Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 4823 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/9c95a7fb-f877-4be5-9cb4-185c12b303ab/ENCFF985PHG.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR721DFB Peak\ track wgEncodeReg4Epigenetics_ENCFF985PHG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF044PYR ENCSR959UQA Peak bigBed 5 Spleen tissue female adult (53 years) POLR2AphosphoS5 peaks 4 4823 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/a2d2601a-0dfd-4644-81cd-260a3c455ac3/ENCFF044PYR.bigBed\ labelFields none\ longLabel Spleen tissue female adult (53 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959UQA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF044PYR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF709BSK ENCSR721DFB Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 4824 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/c482e728-1d24-4558-aa84-fb8751ef3754/ENCFF709BSK.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR721DFB Signal\ track wgEncodeReg4Epigenetics_ENCFF709BSK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF926WSE ENCSR959UQA Signal bigWig Spleen tissue female adult (53 years) POLR2AphosphoS5 ENCSR959UQA signal 2 4824 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/477f6766-91ca-4267-baee-28fafc2adfcf/ENCFF926WSE.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (53 years) POLR2AphosphoS5 ENCSR959UQA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959UQA Signal\ track wgEncodeReg4TfChip_ENCFF926WSE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF252PVN ENCSR721XAP Peak bigBed 5 Inflammatory macrophage male adult 21 years and male adult 40 years DNase peak 4 4825 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/9cb2127e-e5f1-4dd3-8767-16c9d99c9276/ENCFF252PVN.bigBed\ color 6,218,147\ labelFields none\ longLabel Inflammatory macrophage male adult 21 years and male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959XNY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF495TSS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF738EVM ENCSR721XAP Signal bigWig Inflammatory macrophage male adult 21 years and male adult 40 years DNase signal 2 4826 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/6f055a54-60e6-4ec3-8d57-1be25d559d1c/ENCFF738EVM.bigWig\ color 6,218,147\ longLabel Inflammatory macrophage male adult 21 years and male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR721XAP Signal\ track wgEncodeReg4Epigenetics_ENCFF738EVM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF136GJN ENCSR959XNY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED1 MED1 ENCSR959XNY signal 2 4826 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/681b59cb-2327-4d2c-869e-41f27cb7efef/ENCFF136GJN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MED1 MED1 ENCSR959XNY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR959XNY Signal\ track wgEncodeReg4TfChip_ENCFF136GJN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF417OGW ENCSR722HJG Peak bigBed 5 Head of caudate nucleus tissue female adult 82 years DNase peak 4 4827 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/f9e04f5d-06cd-4335-bd62-b37e11901379/ENCFF417OGW.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue female adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR722HJG Peak\ track wgEncodeReg4Epigenetics_ENCFF417OGW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF358XWR ENCSR960ASR Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6 TIGD6 peaks 4 4827 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/a415c52b-9042-4714-9bf6-b123495196bf/ENCFF358XWR.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6 TIGD6 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR960ASR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF358XWR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF812WBM ENCSR722HJG Signal bigWig Head of caudate nucleus tissue female adult 82 years DNase signal 2 4828 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/179c8bb4-073b-4180-b2e3-ecb8b8cfc9fe/ENCFF812WBM.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue female adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR722HJG Signal\ track wgEncodeReg4Epigenetics_ENCFF812WBM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF598MMN ENCSR960ASR Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6 TIGD6 ENCSR960ASR signal 2 4828 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/22/3311b0d6-cf8e-4ab8-8933-245469f01477/ENCFF598MMN.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TIGD6 TIGD6 ENCSR960ASR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR960ASR Signal\ track wgEncodeReg4TfChip_ENCFF598MMN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF085XSR ENCSR723JLG Peak bigBed 5 Natural killer cell female adult 34 years DNase peak 4 4829 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/6d520b65-5f44-41ae-b805-3a030f3b07e6/ENCFF085XSR.bigBed\ color 6,218,147\ labelFields none\ longLabel Natural killer cell female adult 34 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723JLG Peak\ track wgEncodeReg4Epigenetics_ENCFF085XSR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF440JQB ENCSR960MDF Peak bigBed 5 Ascending aorta tissue female adult (51 years) CTCF peaks 4 4829 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/e6025b6b-d6e8-4f31-b459-22e2935fd2f8/ENCFF440JQB.bigBed\ labelFields none\ longLabel Ascending aorta tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR960MDF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF440JQB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF114PBW ENCSR723JLG Signal bigWig Natural killer cell female adult 34 years DNase signal 2 4830 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/acd28e0c-f2b0-4fe1-abd8-980912b1ff83/ENCFF114PBW.bigWig\ color 6,218,147\ longLabel Natural killer cell female adult 34 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723JLG Signal\ track wgEncodeReg4Epigenetics_ENCFF114PBW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF258ZDQ ENCSR960MDF Signal bigWig Ascending aorta tissue female adult (51 years) CTCF ENCSR960MDF signal 2 4830 255 37 41 255 146 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/b1479714-7828-4e35-bea3-31af211c47de/ENCFF258ZDQ.bigWig\ color 255,37,41\ longLabel Ascending aorta tissue female adult (51 years) CTCF ENCSR960MDF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR960MDF Signal\ track wgEncodeReg4TfChip_ENCFF258ZDQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF294BPC ENCSR723MMA Peak bigBed 5 Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak 4 4831 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/7c4cc372-4321-40a5-b470-0c87ab063582/ENCFF294BPC.bigBed\ color 255,0,0\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723MMA Peak\ track wgEncodeReg4Epigenetics_ENCFF294BPC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF066HPG ENCSR961PPA Peak bigBed 5 GM12878 ATF2 peaks 4 4831 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/1a8e634d-2d3b-4415-9f74-c11ee174a4da/ENCFF066HPG.bigBed\ labelFields none\ longLabel GM12878 ATF2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR961PPA Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF066HPG\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF916NRZ ENCSR723MMA Signal bigWig Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal 2 4832 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/f5be34e6-7691-4e91-8282-1d1acd47851e/ENCFF916NRZ.bigWig\ color 255,0,0\ longLabel Activated CD4-positive, alpha-beta memory T cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723MMA Signal\ track wgEncodeReg4Epigenetics_ENCFF916NRZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF335GKG ENCSR961PPA Signal bigWig GM12878 ATF2 ENCSR961PPA signal 2 4832 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/35fef589-b4c3-48a9-8ece-8bf1a8d38e63/ENCFF335GKG.bigWig\ color 254,75,173\ longLabel GM12878 ATF2 ENCSR961PPA signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR961PPA Signal\ track wgEncodeReg4TfChip_ENCFF335GKG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF810MUC ENCSR723RUM Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 4833 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/2ac5ec7b-405f-4d38-ba24-f5dda89baf71/ENCFF810MUC.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723RUM Peak\ track wgEncodeReg4Epigenetics_ENCFF810MUC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF065CBS ENCSR961SKY Peak bigBed 5 Spleen tissue male adult (26 years) CTCF peaks 4 4833 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/fe7b8985-abe9-48ef-a014-86b5900f682e/ENCFF065CBS.bigBed\ labelFields none\ longLabel Spleen tissue male adult (26 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR961SKY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF065CBS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF111ACH ENCSR723RUM Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 4834 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/f3c135ed-f90f-4938-9ec0-e3c2aa221ed1/ENCFF111ACH.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723RUM Signal\ track wgEncodeReg4Epigenetics_ENCFF111ACH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF980HXI ENCSR961SKY Signal bigWig Spleen tissue male adult (26 years) CTCF ENCSR961SKY signal 2 4834 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/1342f6c0-a87b-4519-908b-9f9462e95a24/ENCFF980HXI.bigWig\ color 136,157,97\ longLabel Spleen tissue male adult (26 years) CTCF ENCSR961SKY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR961SKY Signal\ track wgEncodeReg4TfChip_ENCFF980HXI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF527WRB ENCSR723VNG Peak bigBed 5 Left lung tissue male adult 40 years DNase peak 4 4835 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/aa8b634c-a1aa-4a8f-9f53-6dfd1dbcc73a/ENCFF527WRB.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue male adult 40 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723VNG Peak\ track wgEncodeReg4Epigenetics_ENCFF527WRB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF470KZD ENCSR961WLZ Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX5 SOX5 peaks 4 4835 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/45494405-4cfb-49af-b955-3dc4aced70b5/ENCFF470KZD.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX5 SOX5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR961WLZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF470KZD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF990HTO ENCSR723VNG Signal bigWig Left lung tissue male adult 40 years DNase signal 2 4836 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/e6b189dc-6b2b-480a-8401-999ee818788d/ENCFF990HTO.bigWig\ color 6,218,147\ longLabel Left lung tissue male adult 40 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR723VNG Signal\ track wgEncodeReg4Epigenetics_ENCFF990HTO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF409KOM ENCSR961WLZ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX5 SOX5 ENCSR961WLZ signal 2 4836 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/e331ccf1-1d9b-4575-97dd-723582cdbc61/ENCFF409KOM.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX5 SOX5 ENCSR961WLZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR961WLZ Signal\ track wgEncodeReg4TfChip_ENCFF409KOM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF364PTO ENCSR724CND Peak bigBed 5 Foreskin keratinocyte male newborn DNase peak 4 4837 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/a64914dd-d71b-49d2-b2c3-63dd70dd2dad/ENCFF364PTO.bigBed\ color 6,218,147\ labelFields none\ longLabel Foreskin keratinocyte male newborn DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724CND Peak\ track wgEncodeReg4Epigenetics_ENCFF364PTO\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF374MAK ENCSR964BKO Peak bigBed 5 Upper lobe of left lung tissue male adult (54 years) CTCF peaks 4 4837 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/fdaa4283-3f31-4e1f-b873-de281aa44a84/ENCFF374MAK.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue male adult (54 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR964BKO Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF374MAK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF569MJW ENCSR724CND Signal bigWig Foreskin keratinocyte male newborn DNase signal 2 4838 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/c0e2a9d6-61fc-409d-a8b8-2d3617619771/ENCFF569MJW.bigWig\ color 6,218,147\ longLabel Foreskin keratinocyte male newborn DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724CND Signal\ track wgEncodeReg4Epigenetics_ENCFF569MJW\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF079MDX ENCSR964BKO Signal bigWig Upper lobe of left lung tissue male adult (54 years) CTCF ENCSR964BKO signal 2 4838 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/b3682c8c-c7a4-41d2-bd31-e21ee5c4e6d4/ENCFF079MDX.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue male adult (54 years) CTCF ENCSR964BKO signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR964BKO Signal\ track wgEncodeReg4TfChip_ENCFF079MDX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF826OVR ENCSR724GUS Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K27ac peak 4 4839 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/9bfd9313-8f21-413d-a48e-bade36e3d8aa/ENCFF826OVR.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724GUS Peak\ track wgEncodeReg4Epigenetics_ENCFF826OVR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF834XWI ENCSR964ZJC Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547 ZNF547 peaks 4 4839 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/037039c8-21ca-4931-b22f-d3f5a5a9a7e3/ENCFF834XWI.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547 ZNF547 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR964ZJC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF834XWI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF653TLI ENCSR724GUS Signal bigWig CD4-positive, alpha-beta memory T cell H3K27ac signal 2 4840 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/cdb3753f-d34f-4e4c-94e4-fe6b75850fb9/ENCFF653TLI.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724GUS Signal\ track wgEncodeReg4Epigenetics_ENCFF653TLI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF328XJI ENCSR964ZJC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547 ZNF547 ENCSR964ZJC signal 2 4840 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/21/f5cccd95-36fc-49bd-a540-18cab660fa63/ENCFF328XJI.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF547 ZNF547 ENCSR964ZJC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR964ZJC Signal\ track wgEncodeReg4TfChip_ENCFF328XJI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF529EJB ENCSR724INK Peak bigBed 5 Effector memory CD4-positive, alpha-beta T cell male adult 56 years DNase peak 4 4841 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/8e91ba5f-0053-4d9e-89ad-1b5e3476a58e/ENCFF529EJB.bigBed\ color 6,218,147\ labelFields none\ longLabel Effector memory CD4-positive, alpha-beta T cell male adult 56 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724INK Peak\ track wgEncodeReg4Epigenetics_ENCFF529EJB\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF589HXU ENCSR966OUM Peak bigBed 5 Nephron organoid female embryo (5 days): 21 days post differentiation originated from H9 CTCF peaks 4 4841 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/29099e20-a6a8-4006-bd88-20c5790b61d8/ENCFF589HXU.bigBed\ labelFields none\ longLabel Nephron organoid female embryo (5 days): 21 days post differentiation originated from H9 CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966OUM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF589HXU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF871CWE ENCSR724INK Signal bigWig Effector memory CD4-positive, alpha-beta T cell male adult 56 years DNase signal 2 4842 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/64af26d6-fb91-4647-9f10-5501841c9805/ENCFF871CWE.bigWig\ color 6,218,147\ longLabel Effector memory CD4-positive, alpha-beta T cell male adult 56 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724INK Signal\ track wgEncodeReg4Epigenetics_ENCFF871CWE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF227QIR ENCSR966OUM Signal bigWig Nephron organoid female embryo (5 days): 21 days post differentiation originated from H9 CTCF ENCSR966OUM signal 2 4842 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/b7dc0269-414a-411e-9f72-db453ce05ffc/ENCFF227QIR.bigWig\ color 92,161,153\ longLabel Nephron organoid female embryo (5 days): 21 days post differentiation originated from H9 CTCF ENCSR966OUM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966OUM Signal\ track wgEncodeReg4TfChip_ENCFF227QIR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF012FLF ENCSR724QTW Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase peak 4 4843 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/f6cf7ae7-aa83-4737-9453-f8d9260a29f3/ENCFF012FLF.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724QTW Peak\ track wgEncodeReg4Epigenetics_ENCFF012FLF\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF906HIR ENCSR966PJJ Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens WT1 WT1 peaks 4 4843 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/ca60a661-d831-4727-a86d-7bc041bfe436/ENCFF906HIR.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens WT1 WT1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966PJJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF906HIR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF062VIQ ENCSR724QTW Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase signal 2 4844 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/050a58a8-ed0e-46ef-b3d9-01a8528e6389/ENCFF062VIQ.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724QTW Signal\ track wgEncodeReg4Epigenetics_ENCFF062VIQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF563ZYK ENCSR966PJJ Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens WT1 WT1 ENCSR966PJJ signal 2 4844 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/07/1bdbb382-5e6b-4f4f-8df3-237cd4c210eb/ENCFF563ZYK.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens WT1 WT1 ENCSR966PJJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966PJJ Signal\ track wgEncodeReg4TfChip_ENCFF563ZYK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF327VLN ENCSR724YTA Peak bigBed 5 Middle frontal area 46 tissue male adult 87 years CTCF peak 4 4845 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/cd33d549-c364-473a-a8a8-77aaba2103e8/ENCFF327VLN.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 87 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724YTA Peak\ track wgEncodeReg4Epigenetics_ENCFF327VLN\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF817YFO ENCSR966PJY Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIXL1 MIXL1 peaks 4 4845 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/e23de6eb-dd7c-4c6a-a173-18af556f20b0/ENCFF817YFO.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIXL1 MIXL1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966PJY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF817YFO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF961RFY ENCSR724YTA Signal bigWig Middle frontal area 46 tissue male adult 87 years CTCF signal 2 4846 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/a51b7297-d301-45b5-b123-e4ffa3456048/ENCFF961RFY.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue male adult 87 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR724YTA Signal\ track wgEncodeReg4Epigenetics_ENCFF961RFY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF642TFE ENCSR966PJY Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIXL1 MIXL1 ENCSR966PJY signal 2 4846 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/b36066a2-d2e8-4a82-b313-df0fda782f41/ENCFF642TFE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MIXL1 MIXL1 ENCSR966PJY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966PJY Signal\ track wgEncodeReg4TfChip_ENCFF642TFE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF188MTY ENCSR726HTS Peak bigBed 5 Spleen tissue female adult 53 years H3K27ac peak 4 4847 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/d0747448-fc60-4b29-8c88-28b994b66adf/ENCFF188MTY.bigBed\ color 181,145,0\ longLabel Spleen tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR726HTS Peak\ track wgEncodeReg4Epigenetics_ENCFF188MTY\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF016MNJ ENCSR966ULI Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PATZ1 PATZ1 peaks 4 4847 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/7d06727d-46ec-4dac-adc8-8319400e1a82/ENCFF016MNJ.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PATZ1 PATZ1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966ULI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF016MNJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF987FRB ENCSR726HTS Signal bigWig Spleen tissue female adult 53 years H3K27ac signal 2 4848 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/c380fa16-1736-42be-a81d-506b8c9d2e5f/ENCFF987FRB.bigWig\ color 181,145,0\ longLabel Spleen tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR726HTS Signal\ track wgEncodeReg4Epigenetics_ENCFF987FRB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF899RMK ENCSR966ULI Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PATZ1 PATZ1 ENCSR966ULI signal 2 4848 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/dc61ee5d-c74c-4617-8116-d84ffa99369b/ENCFF899RMK.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens PATZ1 PATZ1 ENCSR966ULI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966ULI Signal\ track wgEncodeReg4TfChip_ENCFF899RMK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF266CEG ENCSR726WVB Peak bigBed 5 Substantia nigra tissue male adult 81 years H3K27ac peak 4 4849 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/4f31b628-47a9-4baa-a2c2-4016d7fbfcc6/ENCFF266CEG.bigBed\ color 181,145,0\ longLabel Substantia nigra tissue male adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR726WVB Peak\ track wgEncodeReg4Epigenetics_ENCFF266CEG\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF570JPP ENCSR966YYJ Peak bigBed 5 MCF-7 BMI1 peaks 4 4849 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/01291abc-a99b-4eb3-bae9-aa124866f92c/ENCFF570JPP.bigBed\ labelFields none\ longLabel MCF-7 BMI1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966YYJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF570JPP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF455VBG ENCSR726WVB Signal bigWig Substantia nigra tissue male adult 81 years H3K27ac signal 2 4850 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/2e59f2a4-fc34-4fc9-8e24-81cbbe0d9a05/ENCFF455VBG.bigWig\ color 181,145,0\ longLabel Substantia nigra tissue male adult 81 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR726WVB Signal\ track wgEncodeReg4Epigenetics_ENCFF455VBG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF557RWE ENCSR966YYJ Signal bigWig MCF-7 BMI1 ENCSR966YYJ signal 2 4850 65 171 173 160 213 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/4254bdc3-13e3-432a-a4fb-65c960a2c615/ENCFF557RWE.bigWig\ color 65,171,173\ longLabel MCF-7 BMI1 ENCSR966YYJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR966YYJ Signal\ track wgEncodeReg4TfChip_ENCFF557RWE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF645MMW ENCSR726YMS Peak bigBed 5 Stomach tissue female embryo DNase peak 4 4851 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d547e77d-47c7-460a-951e-1cc75b2556c3/ENCFF645MMW.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR726YMS Peak\ track wgEncodeReg4Epigenetics_ENCFF645MMW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF121QGK ENCSR967BSF Peak bigBed 5 Spleen tissue female adult (41 years) CTCF peaks 4 4851 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/44cf02f6-1585-42c7-8d58-44e829ec051b/ENCFF121QGK.bigBed\ labelFields none\ longLabel Spleen tissue female adult (41 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR967BSF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF121QGK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF361HOE ENCSR726YMS Signal bigWig Stomach tissue female embryo DNase signal 2 4852 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/c325e62d-d045-42cf-b2e8-39b1e7ba82d0/ENCFF361HOE.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR726YMS Signal\ track wgEncodeReg4Epigenetics_ENCFF361HOE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF215HQE ENCSR967BSF Signal bigWig Spleen tissue female adult (41 years) CTCF ENCSR967BSF signal 2 4852 136 157 97 195 206 176 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/95507f1f-3071-4068-b0c3-be4e05daa9ad/ENCFF215HQE.bigWig\ color 136,157,97\ longLabel Spleen tissue female adult (41 years) CTCF ENCSR967BSF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR967BSF Signal\ track wgEncodeReg4TfChip_ENCFF215HQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF727CLQ ENCSR727HME Peak bigBed 5 Lower leg skin tissue female adult 51 years CTCF peak 4 4853 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8ab95919-b10e-4544-b530-3ab93059cd4d/ENCFF727CLQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Lower leg skin tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR727HME Peak\ track wgEncodeReg4Epigenetics_ENCFF727CLQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF458OBF ENCSR967QUQ Peak bigBed 5 Mild cognitive impairment; middle frontal area 46 tissue male adult (89 years) CTCF peaks 4 4853 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/4b56677f-4dcf-4d49-b61d-c861027d0068/ENCFF458OBF.bigBed\ labelFields none\ longLabel Mild cognitive impairment; middle frontal area 46 tissue male adult (89 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR967QUQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF458OBF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF544QXI ENCSR727HME Signal bigWig Lower leg skin tissue female adult 51 years CTCF signal 2 4854 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/78804ba7-114c-4aa5-9b46-798fa5c17f08/ENCFF544QXI.bigWig\ color 0,176,240\ longLabel Lower leg skin tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR727HME Signal\ track wgEncodeReg4Epigenetics_ENCFF544QXI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF341CQE ENCSR967QUQ Signal bigWig Mild cognitive impairment; middle frontal area 46 tissue male adult (89 years) CTCF ENCSR967QUQ signal 2 4854 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/c5d913c7-bf61-48d1-a053-1db0297e1390/ENCFF341CQE.bigWig\ color 155,155,18\ longLabel Mild cognitive impairment; middle frontal area 46 tissue male adult (89 years) CTCF ENCSR967QUQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip on\ shortLabel ENCSR967QUQ Signal\ track wgEncodeReg4TfChip_ENCFF341CQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF788AWZ ENCSR728BAD Peak bigBed 5 Adrenal gland tissue male embryo 108 days DNase peak 4 4855 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/3adab1ea-a393-4241-a36c-a6648c098212/ENCFF788AWZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Adrenal gland tissue male embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR728BAD Peak\ track wgEncodeReg4Epigenetics_ENCFF788AWZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF870NOA ENCSR967ZMR Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB13 HOXB13 peaks 4 4855 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/23f21e88-501a-4249-a446-08564f412646/ENCFF870NOA.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB13 HOXB13 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR967ZMR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF870NOA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF379NJY ENCSR728BAD Signal bigWig Adrenal gland tissue male embryo 108 days DNase signal 2 4856 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/df714a72-521d-45ef-9aa9-b2d24ba73c44/ENCFF379NJY.bigWig\ color 6,218,147\ longLabel Adrenal gland tissue male embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR728BAD Signal\ track wgEncodeReg4Epigenetics_ENCFF379NJY\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF476EWU ENCSR967ZMR Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB13 HOXB13 ENCSR967ZMR signal 2 4856 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/eb963172-07cb-4929-8d69-b2633dc00323/ENCFF476EWU.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB13 HOXB13 ENCSR967ZMR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR967ZMR Signal\ track wgEncodeReg4TfChip_ENCFF476EWU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF948ZGT ENCSR728KQL Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta T cell male adult 21 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 4857 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/427b8193-ee58-4d6d-b187-fea494a141cc/ENCFF948ZGT.bigBed\ color 181,145,0\ longLabel Stimulated activated CD8-positive, alpha-beta T cell male adult 21 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR728KQL Peak\ track wgEncodeReg4Epigenetics_ENCFF948ZGT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF421AVO ENCSR968GIB Peak bigBed 5 K562 RFX1 peaks 4 4857 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/3966e8e4-b246-44e5-87be-40293178844d/ENCFF421AVO.bigBed\ labelFields none\ longLabel K562 RFX1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR968GIB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF421AVO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF519AHX ENCSR728KQL Signal bigWig Stimulated activated CD8-positive, alpha-beta T cell male adult 21 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal 2 4858 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/c74e3daf-998c-4800-ba0f-f6cc59cf77bd/ENCFF519AHX.bigWig\ color 181,145,0\ longLabel Stimulated activated CD8-positive, alpha-beta T cell male adult 21 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR728KQL Signal\ track wgEncodeReg4Epigenetics_ENCFF519AHX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF123HEG ENCSR968GIB Signal bigWig K562 RFX1 ENCSR968GIB signal 2 4858 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/01/a470a817-607b-4c3e-abc8-b46c77a21600/ENCFF123HEG.bigWig\ color 254,75,173\ longLabel K562 RFX1 ENCSR968GIB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR968GIB Signal\ track wgEncodeReg4TfChip_ENCFF123HEG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF732JKW ENCSR728KQX Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 4859 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/a74ce77c-d396-4eb2-9ef8-94532148cb10/ENCFF732JKW.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR728KQX Peak\ track wgEncodeReg4Epigenetics_ENCFF732JKW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF650NCN ENCSR969AIM Peak bigBed 5 SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 treated with 6 μM all-trans-retinoic acid for 48 hours PATZ1 peaks 4 4859 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/08/20/10093cdf-6881-4e2b-922d-d62c3fc123d5/ENCFF650NCN.bigBed\ labelFields none\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 treated with 6 μM all-trans-retinoic acid for 48 hours PATZ1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR969AIM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF650NCN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF888OJS ENCSR728KQX Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 4860 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/2bafc988-caf9-4c2a-8505-30b9c3206fa5/ENCFF888OJS.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR728KQX Signal\ track wgEncodeReg4Epigenetics_ENCFF888OJS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF448BKK ENCSR969AIM Signal bigWig SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 treated with 6 μM all-trans-retinoic acid for 48 hours PATZ1 ENCSR969AIM signal 2 4860 155 155 18 205 205 136 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/3478f3d2-8ced-4458-bd8d-a0cdae90a850/ENCFF448BKK.bigWig\ color 155,155,18\ longLabel SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens PATZ1 treated with 6 μM all-trans-retinoic acid for 48 hours PATZ1 ENCSR969AIM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR969AIM Signal\ track wgEncodeReg4TfChip_ENCFF448BKK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF715HMS ENCSR729AAI Peak bigBed 5 Heart left ventricle tissue male adult 73 years H3K4me3 peak 4 4861 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/60e2db1f-162c-4620-a3c0-4410d99b3d16/ENCFF715HMS.bigBed\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 73 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729AAI Peak\ track wgEncodeReg4Epigenetics_ENCFF715HMS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF221HJH ENCSR970NKQ Peak bigBed 5 K562 NR2F1 peaks 4 4861 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/acf2d3f3-4b5b-4fbc-b9ce-f7f127ccf088/ENCFF221HJH.bigBed\ labelFields none\ longLabel K562 NR2F1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR970NKQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF221HJH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF957OYD ENCSR729AAI Signal bigWig Heart left ventricle tissue male adult 73 years H3K4me3 signal 2 4862 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/8ab2a954-d42d-44cb-88ee-94bfcabac493/ENCFF957OYD.bigWig\ color 255,0,0\ longLabel Heart left ventricle tissue male adult 73 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729AAI Signal\ track wgEncodeReg4Epigenetics_ENCFF957OYD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF239LIU ENCSR970NKQ Signal bigWig K562 NR2F1 ENCSR970NKQ signal 2 4862 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/754e8084-3560-4a28-9c0b-94421f044937/ENCFF239LIU.bigWig\ color 254,75,173\ longLabel K562 NR2F1 ENCSR970NKQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR970NKQ Signal\ track wgEncodeReg4TfChip_ENCFF239LIU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF228XWS ENCSR729DRB Peak bigBed 5 Testis tissue male embryo DNase peak 4 4863 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/10/1942206f-8b51-4738-8e2f-66ea005d1ff4/ENCFF228XWS.bigBed\ color 6,218,147\ labelFields none\ longLabel Testis tissue male embryo DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729DRB Peak\ track wgEncodeReg4Epigenetics_ENCFF228XWS\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF319QZT ENCSR970OJY Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 peaks 4 4863 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/fef8a52a-160e-4fc0-b634-8c0dd334f135/ENCFF319QZT.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR970OJY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF319QZT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF047EHA ENCSR729DRB Signal bigWig Testis tissue male embryo DNase signal 2 4864 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/10/66d39a3e-6fd3-4567-bd13-610b79995d23/ENCFF047EHA.bigWig\ color 6,218,147\ longLabel Testis tissue male embryo DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729DRB Signal\ track wgEncodeReg4Epigenetics_ENCFF047EHA\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF855LPH ENCSR970OJY Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 ENCSR970OJY signal 2 4864 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/887724fe-64c9-4e62-8acb-96c04fe08e2e/ENCFF855LPH.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TCF3 TCF3 ENCSR970OJY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR970OJY Signal\ track wgEncodeReg4TfChip_ENCFF855LPH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF102QDM ENCSR729ENO Peak bigBed 5 GM23338 originated from GM23248 H3K27ac peak 4 4865 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/bb730da5-63c5-40e0-9c13-2c17f1185209/ENCFF102QDM.bigBed\ color 181,145,0\ longLabel GM23338 originated from GM23248 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729ENO Peak\ track wgEncodeReg4Epigenetics_ENCFF102QDM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF645BXH ENCSR970UZD Peak bigBed 5 Upper lobe of left lung tissue female adult (53 years) CTCF peaks 4 4865 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/d03337ec-89e8-416b-b626-a840d60e8fd4/ENCFF645BXH.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (53 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR970UZD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF645BXH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF641QBD ENCSR729ENO Signal bigWig GM23338 originated from GM23248 H3K27ac signal 2 4866 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/b3073731-e904-4751-a872-a1d2158ae354/ENCFF641QBD.bigWig\ color 181,145,0\ longLabel GM23338 originated from GM23248 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729ENO Signal\ track wgEncodeReg4Epigenetics_ENCFF641QBD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF906JMX ENCSR970UZD Signal bigWig Upper lobe of left lung tissue female adult (53 years) CTCF ENCSR970UZD signal 2 4866 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/1d9807fb-64ff-434e-a07d-4d76176fc7a2/ENCFF906JMX.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (53 years) CTCF ENCSR970UZD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR970UZD Signal\ track wgEncodeReg4TfChip_ENCFF906JMX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF599RFU ENCSR729FNL Peak bigBed 5 Posterior cingulate cortex tissue male adult 20 years ATAC peak 4 4867 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/12/04b7b19a-9804-4c68-a5d0-b77ed2eb8bf7/ENCFF599RFU.bigBed\ color 2,199,185\ longLabel Posterior cingulate cortex tissue male adult 20 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729FNL Peak\ track wgEncodeReg4Epigenetics_ENCFF599RFU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF336FFA ENCSR971EWR Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 peaks 4 4867 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/2864b6c7-b189-4f53-a645-b208541037f1/ENCFF336FFA.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR971EWR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF336FFA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF752ZXK ENCSR729FNL Signal bigWig Posterior cingulate cortex tissue male adult 20 years ATAC signal 2 4868 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/12/2753b7d5-4068-4bf1-b16f-01b9fcf98e24/ENCFF752ZXK.bigWig\ color 2,199,185\ longLabel Posterior cingulate cortex tissue male adult 20 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729FNL Signal\ track wgEncodeReg4Epigenetics_ENCFF752ZXK\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF042WYK ENCSR971EWR Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 ENCSR971EWR signal 2 4868 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/dbc233bd-93e8-42db-a0de-08511a502556/ENCFF042WYK.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ETV5 ETV5 ENCSR971EWR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR971EWR Signal\ track wgEncodeReg4TfChip_ENCFF042WYK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF891CRM ENCSR729GQT Peak bigBed 5 IPS-20b H3K27ac peak 4 4869 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/447acf64-77c6-4658-9e94-797ad9255f53/ENCFF891CRM.bigBed\ color 181,145,0\ longLabel IPS-20b H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729GQT Peak\ track wgEncodeReg4Epigenetics_ENCFF891CRM\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF962AIJ ENCSR972LYL Peak bigBed 5 Upper lobe of left lung tissue female adult (51 years) CTCF peaks 4 4869 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/afc07444-1254-4449-82ab-0e19bc2ec016/ENCFF962AIJ.bigBed\ labelFields none\ longLabel Upper lobe of left lung tissue female adult (51 years) CTCF peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR972LYL Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF962AIJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF661BET ENCSR729GQT Signal bigWig IPS-20b H3K27ac signal 2 4870 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/171e6d4a-7d65-4018-aacd-9b9afcad8b43/ENCFF661BET.bigWig\ color 181,145,0\ longLabel IPS-20b H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729GQT Signal\ track wgEncodeReg4Epigenetics_ENCFF661BET\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF483PKD ENCSR972LYL Signal bigWig Upper lobe of left lung tissue female adult (51 years) CTCF ENCSR972LYL signal 2 4870 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/08f43b6c-0943-4106-8b51-8e5066893b62/ENCFF483PKD.bigWig\ color 130,163,45\ longLabel Upper lobe of left lung tissue female adult (51 years) CTCF ENCSR972LYL signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR972LYL Signal\ track wgEncodeReg4TfChip_ENCFF483PKD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF601UNH ENCSR729TYE Peak bigBed 5 Posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 4871 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/e791f686-431f-4b9a-94df-7c23c8744bb9/ENCFF601UNH.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729TYE Peak\ track wgEncodeReg4Epigenetics_ENCFF601UNH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF308SKS ENCSR972ZBV Peak bigBed 5 K562 ATF7 peaks 4 4871 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/d3dcecc2-29bb-4b39-921a-88711b983b2e/ENCFF308SKS.bigBed\ labelFields none\ longLabel K562 ATF7 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR972ZBV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF308SKS\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF836SMO ENCSR729TYE Signal bigWig Posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 4872 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/84d60015-284c-42b4-9d80-e2b380660eed/ENCFF836SMO.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729TYE Signal\ track wgEncodeReg4Epigenetics_ENCFF836SMO\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF882NZV ENCSR972ZBV Signal bigWig K562 ATF7 ENCSR972ZBV signal 2 4872 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/19/a4bb97af-e079-4f6a-bfcf-23c28b67477c/ENCFF882NZV.bigWig\ color 254,75,173\ longLabel K562 ATF7 ENCSR972ZBV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR972ZBV Signal\ track wgEncodeReg4TfChip_ENCFF882NZV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF499XZZ ENCSR729UZM Peak bigBed 5 Progenitor cell of endocrine pancreas H3K4me3 peak 4 4873 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/fefd9057-3b61-4a09-a6c8-fcf36a7a95b8/ENCFF499XZZ.bigBed\ color 255,0,0\ longLabel Progenitor cell of endocrine pancreas H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729UZM Peak\ track wgEncodeReg4Epigenetics_ENCFF499XZZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF570KBU ENCSR974OFJ Peak bigBed 5 GM12878 KLF5 peaks 4 4873 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/2af102dd-9512-46c5-a03c-865d4968eef9/ENCFF570KBU.bigBed\ labelFields none\ longLabel GM12878 KLF5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR974OFJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF570KBU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF165GJZ ENCSR729UZM Signal bigWig Progenitor cell of endocrine pancreas H3K4me3 signal 2 4874 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/282b3f84-dcf5-49a3-bb15-f7da02c0b32e/ENCFF165GJZ.bigWig\ color 255,0,0\ longLabel Progenitor cell of endocrine pancreas H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR729UZM Signal\ track wgEncodeReg4Epigenetics_ENCFF165GJZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF190VIG ENCSR974OFJ Signal bigWig GM12878 KLF5 ENCSR974OFJ signal 2 4874 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/ce08f365-3f6e-44ac-95d5-1fbfbe4e65e4/ENCFF190VIG.bigWig\ color 254,75,173\ longLabel GM12878 KLF5 ENCSR974OFJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR974OFJ Signal\ track wgEncodeReg4TfChip_ENCFF190VIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF347ZKZ ENCSR730IHD Peak bigBed 5 Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 4875 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/d025f3fc-ec9f-486b-9e45-e0541ddf9ca5/ENCFF347ZKZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR730IHD Peak\ track wgEncodeReg4Epigenetics_ENCFF347ZKZ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF886KFV ENCSR975SSR Peak bigBed 5 K562 stably expressing ELF1 ELF1 peaks 4 4875 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/4fcb120b-87d6-4ef4-884a-5760b1e50abf/ENCFF886KFV.bigBed\ labelFields none\ longLabel K562 stably expressing ELF1 ELF1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR975SSR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF886KFV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF214ZVC ENCSR730IHD Signal bigWig Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 4876 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/c83612d0-cd09-4b0e-8851-5380a70ad05c/ENCFF214ZVC.bigWig\ color 6,218,147\ longLabel Alzheimer's disease posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR730IHD Signal\ track wgEncodeReg4Epigenetics_ENCFF214ZVC\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF532BNR ENCSR975SSR Signal bigWig K562 stably expressing ELF1 ELF1 ENCSR975SSR signal 2 4876 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/ce3495d0-8554-467e-9208-0f70f1603b3f/ENCFF532BNR.bigWig\ color 254,75,173\ longLabel K562 stably expressing ELF1 ELF1 ENCSR975SSR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR975SSR Signal\ track wgEncodeReg4TfChip_ENCFF532BNR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF910XES ENCSR731KDL Peak bigBed 5 T-helper 17 cell male adult 48 years DNase peak 4 4877 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/f069fbf2-5fb6-4a5a-86fc-333703b855e9/ENCFF910XES.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 17 cell male adult 48 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731KDL Peak\ track wgEncodeReg4Epigenetics_ENCFF910XES\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF562PPN ENCSR976TBC Peak bigBed 5 GM12878 IRF5 peaks 4 4877 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/b52306a8-b6f5-440a-b014-6dc099f82eb6/ENCFF562PPN.bigBed\ labelFields none\ longLabel GM12878 IRF5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR976TBC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF562PPN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF113ELV ENCSR731KDL Signal bigWig T-helper 17 cell male adult 48 years DNase signal 2 4878 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/faa5f5bc-9360-4e07-8a6b-e7356dcc8e41/ENCFF113ELV.bigWig\ color 6,218,147\ longLabel T-helper 17 cell male adult 48 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731KDL Signal\ track wgEncodeReg4Epigenetics_ENCFF113ELV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF686LMA ENCSR976TBC Signal bigWig GM12878 IRF5 ENCSR976TBC signal 2 4878 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/db0d0d55-9cc8-4a6a-9e6f-cba3a567b22f/ENCFF686LMA.bigWig\ color 254,75,173\ longLabel GM12878 IRF5 ENCSR976TBC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR976TBC Signal\ track wgEncodeReg4TfChip_ENCFF686LMA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF931NIC ENCSR731ODJ Peak bigBed 5 Left cardiac atrium tissue female adult 58 years ATAC peak 4 4879 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/c93d85a0-9e49-4b8c-8e7b-6d95579748e9/ENCFF931NIC.bigBed\ color 2,199,185\ longLabel Left cardiac atrium tissue female adult 58 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731ODJ Peak\ track wgEncodeReg4Epigenetics_ENCFF931NIC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF012KDW ENCSR977FEF Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1 PRDM1 peaks 4 4879 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/125d3c87-a067-4d85-9ce3-0de3710c8b51/ENCFF012KDW.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1 PRDM1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR977FEF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF012KDW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF330FOE ENCSR731ODJ Signal bigWig Left cardiac atrium tissue female adult 58 years ATAC signal 2 4880 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/a08606ea-b585-4508-8ec6-94afac4148be/ENCFF330FOE.bigWig\ color 2,199,185\ longLabel Left cardiac atrium tissue female adult 58 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731ODJ Signal\ track wgEncodeReg4Epigenetics_ENCFF330FOE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070QOI ENCSR977FEF Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1 PRDM1 ENCSR977FEF signal 2 4880 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/07/791c746c-6e82-4e19-9810-d308f532cdd4/ENCFF070QOI.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM1 PRDM1 ENCSR977FEF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR977FEF Signal\ track wgEncodeReg4TfChip_ENCFF070QOI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF508FYE ENCSR731QLJ Peak bigBed 5 Mesenchymal stem cell originated from H1 DNase peak 4 4881 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/9f5b0410-f98a-4bcd-8576-bc111479614a/ENCFF508FYE.bigBed\ color 6,218,147\ labelFields none\ longLabel Mesenchymal stem cell originated from H1 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731QLJ Peak\ track wgEncodeReg4Epigenetics_ENCFF508FYE\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF066NGR ENCSR977HTH Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF18 ZNF18 peaks 4 4881 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/df0565c5-951f-40a0-991e-405ff1b1c64c/ENCFF066NGR.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF18 ZNF18 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR977HTH Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF066NGR\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF387STL ENCSR731QLJ Signal bigWig Mesenchymal stem cell originated from H1 DNase signal 2 4882 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/2252cb6d-9d95-4c17-a3be-ca04b3d90c8f/ENCFF387STL.bigWig\ color 6,218,147\ longLabel Mesenchymal stem cell originated from H1 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731QLJ Signal\ track wgEncodeReg4Epigenetics_ENCFF387STL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF267XNF ENCSR977HTH Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF18 ZNF18 ENCSR977HTH signal 2 4882 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/15f00a7d-8a06-4619-a950-7f71ddbf0d9d/ENCFF267XNF.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF18 ZNF18 ENCSR977HTH signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR977HTH Signal\ track wgEncodeReg4TfChip_ENCFF267XNF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF813YVW ENCSR731QXN Peak bigBed 5 Esophagus squamous epithelium tissue male adult 37 years H3K4me3 peak 4 4883 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/8888211c-5309-4231-9656-deb5edd1f179/ENCFF813YVW.bigBed\ color 255,0,0\ longLabel Esophagus squamous epithelium tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731QXN Peak\ track wgEncodeReg4Epigenetics_ENCFF813YVW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF700EUN ENCSR978EQY Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI2 GLI2 peaks 4 4883 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/ea7b0ae8-76fb-46cf-9de3-af6c2d00cf15/ENCFF700EUN.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI2 GLI2 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR978EQY Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF700EUN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF764HZI ENCSR731QXN Signal bigWig Esophagus squamous epithelium tissue male adult 37 years H3K4me3 signal 2 4884 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f479140b-7b1e-4d25-90c7-74aef5dda662/ENCFF764HZI.bigWig\ color 255,0,0\ longLabel Esophagus squamous epithelium tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR731QXN Signal\ track wgEncodeReg4Epigenetics_ENCFF764HZI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF475XTI ENCSR978EQY Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI2 GLI2 ENCSR978EQY signal 2 4884 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/e90240a9-877a-48b5-aa2f-95f7659cc3bf/ENCFF475XTI.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens GLI2 GLI2 ENCSR978EQY signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR978EQY Signal\ track wgEncodeReg4TfChip_ENCFF475XTI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF651UCU ENCSR732IFV Peak bigBed 5 Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak 4 4885 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/f5bf54c8-6393-4d08-a25c-1966a1742c7f/ENCFF651UCU.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR732IFV Peak\ track wgEncodeReg4Epigenetics_ENCFF651UCU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF725QFT ENCSR978LQC Peak bigBed 5 Sigmoid colon tissue male adult (54 years) POLR2AphosphoS5 peaks 4 4885 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/f42a2499-3feb-4486-a9b1-c7ce79c5f5d4/ENCFF725QFT.bigBed\ labelFields none\ longLabel Sigmoid colon tissue male adult (54 years) POLR2AphosphoS5 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR978LQC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF725QFT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF526ZOQ ENCSR732IFV Signal bigWig Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 4886 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/04/34849ce1-0760-42aa-91d9-b0bca18bd8e7/ENCFF526ZOQ.bigWig\ color 6,218,147\ longLabel Activated effector memory CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR732IFV Signal\ track wgEncodeReg4Epigenetics_ENCFF526ZOQ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF698TMI ENCSR978LQC Signal bigWig Sigmoid colon tissue male adult (54 years) POLR2AphosphoS5 ENCSR978LQC signal 2 4886 86 86 36 170 170 145 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/e7a8d637-db52-4033-960c-d5f4717a87a4/ENCFF698TMI.bigWig\ color 86,86,36\ longLabel Sigmoid colon tissue male adult (54 years) POLR2AphosphoS5 ENCSR978LQC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR978LQC Signal\ track wgEncodeReg4TfChip_ENCFF698TMI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF360JEW ENCSR732RIC Peak bigBed 5 Ovary tissue female adult 47 years DNase peak 4 4887 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/17a76bc5-1ca0-4a95-b45e-120de1e474cd/ENCFF360JEW.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 47 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR732RIC Peak\ track wgEncodeReg4Epigenetics_ENCFF360JEW\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF084VJR ENCSR979DMN Peak bigBed 5 Body of pancreas tissue female adult (53 years) POLR2A peaks 4 4887 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/0e3d0dd7-dc2b-4152-b744-4adb8a9230a3/ENCFF084VJR.bigBed\ labelFields none\ longLabel Body of pancreas tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR980EGJ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF687JDU\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF678ORF ENCSR735MJZ Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase signal 2 4898 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/1a0989ca-b505-4cf5-a044-0bc99b1cb527/ENCFF678ORF.bigWig\ color 6,218,147\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR735MJZ Signal\ track wgEncodeReg4Epigenetics_ENCFF678ORF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF165EDT ENCSR980EGJ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TP53 TP53 ENCSR980EGJ signal 2 4898 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/39f72bbe-8ce8-42c8-a76b-6c98093c8cd3/ENCFF165EDT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TP53 TP53 ENCSR980EGJ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR980EGJ Signal\ track wgEncodeReg4TfChip_ENCFF165EDT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF485JBC ENCSR735NTV Peak bigBed 5 Heart left ventricle tissue male adult 54 years DNase peak 4 4899 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/39946623-ef4d-489b-a3ea-e3fd5ed3055e/ENCFF485JBC.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart left ventricle tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR735NTV Peak\ track wgEncodeReg4Epigenetics_ENCFF485JBC\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF752OAT ENCSR980HGI Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF4 ELF4 peaks 4 4899 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/9f3e9758-9652-4e7e-9ac5-d412dfe6ae3c/ENCFF752OAT.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF4 ELF4 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR980HGI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF752OAT\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF321BJG ENCSR735NTV Signal bigWig Heart left ventricle tissue male adult 54 years DNase signal 2 4900 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/c622c725-ff3d-4f26-8c0f-fd9356848a41/ENCFF321BJG.bigWig\ color 6,218,147\ longLabel Heart left ventricle tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR735NTV Signal\ track wgEncodeReg4Epigenetics_ENCFF321BJG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF070OXR ENCSR980HGI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF4 ELF4 ENCSR980HGI signal 2 4900 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/30/223f5025-533e-45c2-9d27-6dd7a23e34ea/ENCFF070OXR.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ELF4 ELF4 ENCSR980HGI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR980HGI Signal\ track wgEncodeReg4TfChip_ENCFF070OXR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF439NDP ENCSR735SLW Peak bigBed 5 Parathyroid adenoma tissue male adult 62 years H3K27ac peak 4 4901 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/08ad3385-829b-4ed6-a49d-4bbcaa70617b/ENCFF439NDP.bigBed\ color 181,145,0\ longLabel Parathyroid adenoma tissue male adult 62 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR735SLW Peak\ track wgEncodeReg4Epigenetics_ENCFF439NDP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF096JUW ENCSR981BHT Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ADNP ADNP peaks 4 4901 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/01/5752152e-526a-4e1b-b3dc-dc33018c253d/ENCFF096JUW.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ADNP ADNP peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR981CID Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF409BGH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF825YXF ENCSR736ALU Signal bigWig Gastrocnemius medialis tissue female adult 53 years H3K27ac signal 2 4904 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/07573f80-8811-48c0-897f-a1466b029816/ENCFF825YXF.bigWig\ color 181,145,0\ longLabel Gastrocnemius medialis tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR736ALU Signal\ track wgEncodeReg4Epigenetics_ENCFF825YXF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF245HIM ENCSR981CID Signal bigWig Testis tissue male adult (54 years) CTCF ENCSR981CID signal 2 4904 139 140 140 197 197 197 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/d5b940f9-f7a3-4400-ac25-450becb65fea/ENCFF245HIM.bigWig\ color 139,140,140\ longLabel Testis tissue male adult (54 years) CTCF ENCSR981CID signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR981CID Signal\ track wgEncodeReg4TfChip_ENCFF245HIM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF696EWL ENCSR736PZW Peak bigBed 5 Left lung tissue female child 16 years CTCF peak 4 4905 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/3f6d37ff-2c8c-4d38-9613-1903c924fca1/ENCFF696EWL.bigBed\ color 0,176,240\ labelFields none\ longLabel Left lung tissue female child 16 years CTCF peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR982CFC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF071MVY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF975RFH ENCSR736PZW Signal bigWig Left lung tissue female child 16 years CTCF signal 2 4906 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/47e3b68d-07af-421c-b4b9-076dd78c9b64/ENCFF975RFH.bigWig\ color 0,176,240\ longLabel Left lung tissue female child 16 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR736PZW Signal\ track wgEncodeReg4Epigenetics_ENCFF975RFH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF469PQE ENCSR982CFC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR0B2 NR0B2 ENCSR982CFC signal 2 4906 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/04/c4f03afe-36d4-443a-93fd-f70b5ec42eac/ENCFF469PQE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NR0B2 NR0B2 ENCSR982CFC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR982CFC Signal\ track wgEncodeReg4TfChip_ENCFF469PQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF864GMC ENCSR736VVP Peak bigBed 5 Memory B cell female adult 39 years DNase peak 4 4907 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/2a9fb931-5e9a-4e36-99c9-152bfc6f3abf/ENCFF864GMC.bigBed\ color 6,218,147\ labelFields none\ longLabel Memory B cell female adult 39 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR983FBD Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF403RMK\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF286HTZ ENCSR736VVP Signal bigWig Memory B cell female adult 39 years DNase signal 2 4908 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/b987af37-ee8b-4efb-a8c2-6aa1c1684967/ENCFF286HTZ.bigWig\ color 6,218,147\ longLabel Memory B cell female adult 39 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR736VVP Signal\ track wgEncodeReg4Epigenetics_ENCFF286HTZ\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF660NKO ENCSR983FBD Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2 NFE2 ENCSR983FBD signal 2 4908 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/4620be96-4d81-4ac9-a01b-1e98fc9c5648/ENCFF660NKO.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens NFE2 NFE2 ENCSR983FBD signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR983FBD Signal\ track wgEncodeReg4TfChip_ENCFF660NKO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF673EOO ENCSR737HKX Peak bigBed 5 K562 treated with 10 nM Chaetocin for 24 hours ATAC peak 4 4909 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/544def66-ed13-429c-92f1-90020f0a487f/ENCFF673EOO.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Chaetocin for 24 hours ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR983KRB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF038CCB\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF122JBM ENCSR737HKX Signal bigWig K562 treated with 10 nM Chaetocin for 24 hours ATAC signal 2 4910 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/9beceb7d-634d-475c-a999-bb043005a46e/ENCFF122JBM.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Chaetocin for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR737HKX Signal\ track wgEncodeReg4Epigenetics_ENCFF122JBM\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF618PGH ENCSR983KRB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTA1 MTA1 ENCSR983KRB signal 2 4910 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/a3f749a8-7b1d-4b85-8bcf-ffa63842c650/ENCFF618PGH.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MTA1 MTA1 ENCSR983KRB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR983KRB Signal\ track wgEncodeReg4TfChip_ENCFF618PGH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF110KYU ENCSR737WCC Peak bigBed 5 Left ventricle myocardium inferior tissue male adult 60 years H3K4me3 peak 4 4911 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/01b68b44-9579-4910-8cbe-fb75f485a681/ENCFF110KYU.bigBed\ color 255,0,0\ longLabel Left ventricle myocardium inferior tissue male adult 60 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR737WCC Peak\ track wgEncodeReg4Epigenetics_ENCFF110KYU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF151DHM ENCSR984IXF Peak bigBed 5 HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709 ZNF709 peaks 4 4911 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/4a3396f7-8498-45b8-a3ab-9411ae9d2cdb/ENCFF151DHM.bigBed\ labelFields none\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709 ZNF709 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR984IXF Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF151DHM\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF237QAL ENCSR737WCC Signal bigWig Left ventricle myocardium inferior tissue male adult 60 years H3K4me3 signal 2 4912 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/ada7a717-895f-4ce5-a47c-1f54e4e33356/ENCFF237QAL.bigWig\ color 255,0,0\ longLabel Left ventricle myocardium inferior tissue male adult 60 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR737WCC Signal\ track wgEncodeReg4Epigenetics_ENCFF237QAL\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF838EZK ENCSR984IXF Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709 ZNF709 ENCSR984IXF signal 2 4912 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/06/29/e8705d6b-6e92-4325-8b8f-c9cd87221c0e/ENCFF838EZK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF709 ZNF709 ENCSR984IXF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR984IXF Signal\ track wgEncodeReg4TfChip_ENCFF838EZK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF912MHH ENCSR738LBP Peak bigBed 5 Thymus tissue male child 3 years H3K4me3 peak 4 4913 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/227399eb-3131-4f7a-87f2-13e3f78eace8/ENCFF912MHH.bigBed\ color 255,0,0\ longLabel Thymus tissue male child 3 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR738LBP Peak\ track wgEncodeReg4Epigenetics_ENCFF912MHH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF308WOW ENCSR984MDV Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF24 ZNF24 peaks 4 4913 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/260f77c4-d9d4-4829-8631-aeb0b9602098/ENCFF308WOW.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF24 ZNF24 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR984MDV Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF308WOW\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF303PLE ENCSR738LBP Signal bigWig Thymus tissue male child 3 years H3K4me3 signal 2 4914 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/1620899d-d369-4578-9b6f-8707cb91b695/ENCFF303PLE.bigWig\ color 255,0,0\ longLabel Thymus tissue male child 3 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR738LBP Signal\ track wgEncodeReg4Epigenetics_ENCFF303PLE\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF362OEE ENCSR984MDV Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF24 ZNF24 ENCSR984MDV signal 2 4914 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/06/d88afa37-b37d-4814-8f80-865c91bbb144/ENCFF362OEE.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF24 ZNF24 ENCSR984MDV signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR984MDV Signal\ track wgEncodeReg4TfChip_ENCFF362OEE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF394PHQ ENCSR738SXD Peak bigBed 5 Upper lobe of left lung tissue female adult 53 years H3K27ac peak 4 4915 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/c1e6dd50-a21a-499c-8de0-29bcd4e48d89/ENCFF394PHQ.bigBed\ color 181,145,0\ longLabel Upper lobe of left lung tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR738SXD Peak\ track wgEncodeReg4Epigenetics_ENCFF394PHQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF672LNV ENCSR985OYK Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 peaks 4 4915 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/997ee978-e610-4726-8e65-3935db8ca61f/ENCFF672LNV.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR985OYK Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF672LNV\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF174WAB ENCSR738SXD Signal bigWig Upper lobe of left lung tissue female adult 53 years H3K27ac signal 2 4916 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/40a4fd18-3257-435c-8757-7e46e734d5a4/ENCFF174WAB.bigWig\ color 181,145,0\ longLabel Upper lobe of left lung tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR738SXD Signal\ track wgEncodeReg4Epigenetics_ENCFF174WAB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF478KSR ENCSR985OYK Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 ENCSR985OYK signal 2 4916 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/04/4f0eb0a6-0283-4866-9362-1c94c682d39e/ENCFF478KSR.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB11 ZBTB11 ENCSR985OYK signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR985OYK Signal\ track wgEncodeReg4TfChip_ENCFF478KSR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF953QVR ENCSR739VKY Peak bigBed 5 Naive B cell female adult 39 years DNase peak 4 4917 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/01/2a7477b6-1069-425d-8ec1-36d3ff193037/ENCFF953QVR.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive B cell female adult 39 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR739VKY Peak\ track wgEncodeReg4Epigenetics_ENCFF953QVR\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF718PFO ENCSR986CDX Peak bigBed 5 K562 NEUROD1 peaks 4 4917 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/ec6e9ae1-5c23-4318-a59a-5d2937849df0/ENCFF718PFO.bigBed\ labelFields none\ longLabel K562 NEUROD1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR987GXT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF531QOI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF345XIS ENCSR741HEF Signal bigWig Heart right ventricle tissue male adult 61 years H3K27ac signal 2 4924 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/c083151c-b067-4ef4-ae55-5fd6fcc6f828/ENCFF345XIS.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue male adult 61 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR741HEF Signal\ track wgEncodeReg4Epigenetics_ENCFF345XIS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF622JEC ENCSR987GXT Signal bigWig GM23338 originated from GM23248 CTCF ENCSR987GXT signal 2 4924 127 133 209 191 194 232 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/11/53bd8758-3280-402e-9721-5114f2874f04/ENCFF622JEC.bigWig\ color 127,133,209\ longLabel GM23338 originated from GM23248 CTCF ENCSR987GXT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR987GXT Signal\ track wgEncodeReg4TfChip_ENCFF622JEC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF709QWG ENCSR741QNS Peak bigBed 5 K562 treated with 5 μM C646 for 24 hours ATAC peak 4 4925 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/9e82f9f7-28c1-47e4-a6fd-7f676760c7f5/ENCFF709QWG.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM C646 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR987PBI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF742HMD\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF313VVF ENCSR741STU Signal bigWig DOHH2 H3K27ac signal 2 4928 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/49cfdf02-4a45-4179-914e-69232f16d56b/ENCFF313VVF.bigWig\ color 181,145,0\ longLabel DOHH2 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR741STU Signal\ track wgEncodeReg4Epigenetics_ENCFF313VVF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF151LNY ENCSR987PBI Signal bigWig K562 DNMT1 ENCSR987PBI signal 2 4928 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/03/1c9e7eb1-f33a-4c70-96ef-cd5a20edf84a/ENCFF151LNY.bigWig\ color 254,75,173\ longLabel K562 DNMT1 ENCSR987PBI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR987PBI Signal\ track wgEncodeReg4TfChip_ENCFF151LNY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF500PWU ENCSR741XAE Peak bigBed 5 Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak 4 4929 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/a569f6e6-d12a-4206-ae39-117ea371b2df/ENCFF500PWU.bigBed\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR988EVQ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF519XEF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF157BRH ENCSR741XAE Signal bigWig Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal 2 4930 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/dc6ca37f-4157-4507-a1f1-eae63d64e840/ENCFF157BRH.bigWig\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR741XAE Signal\ track wgEncodeReg4Epigenetics_ENCFF157BRH\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF715ZTQ ENCSR988EVQ Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens XBP1 XBP1 ENCSR988EVQ signal 2 4930 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/59e4f0ae-aa90-404d-a763-7a0bc9c4f353/ENCFF715ZTQ.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens XBP1 XBP1 ENCSR988EVQ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR988EVQ Signal\ track wgEncodeReg4TfChip_ENCFF715ZTQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF918VHT ENCSR742HBK Peak bigBed 5 Head of caudate nucleus tissue male adult 86 years DNase peak 4 4931 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/36bd77d7-eaaa-4820-8068-1bab3339ff58/ENCFF918VHT.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 86 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR988LZG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF519OXJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF566NSN ENCSR742HBK Signal bigWig Head of caudate nucleus tissue male adult 86 years DNase signal 2 4932 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/eb0718e4-8302-40d6-ba6e-a64b07b8f892/ENCFF566NSN.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 86 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR742HBK Signal\ track wgEncodeReg4Epigenetics_ENCFF566NSN\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF774HXK ENCSR988LZG Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B ARID4B ENCSR988LZG signal 2 4932 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/24e47946-1895-4564-aba0-6ef9b66a2bf7/ENCFF774HXK.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B ARID4B ENCSR988LZG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR988LZG Signal\ track wgEncodeReg4TfChip_ENCFF774HXK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF699ULB ENCSR742HMR Peak bigBed 5 Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 peak 4 4933 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/429c2c99-9167-4fc1-8ee2-cc55d090f8d5/ENCFF699ULB.bigBed\ color 255,0,0\ longLabel Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR988ZSI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF145QRA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF060YXX ENCSR742HMR Signal bigWig Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 signal 2 4934 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/ed553c56-89de-48f0-b0b5-c7cde92e9c8b/ENCFF060YXX.bigWig\ color 255,0,0\ longLabel Activated T-helper 17 cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR742HMR Signal\ track wgEncodeReg4Epigenetics_ENCFF060YXX\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF964ITE ENCSR988ZSI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RERE RERE ENCSR988ZSI signal 2 4934 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/57c6c397-aac9-47ac-9d69-c60d27d89e04/ENCFF964ITE.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RERE RERE ENCSR988ZSI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR988ZSI Signal\ track wgEncodeReg4TfChip_ENCFF964ITE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF393ZPD ENCSR743DDX Peak bigBed 5 Stomach tissue female embryo 96 days H3K27ac peak 4 4935 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/cfafec74-ee8e-4e53-8623-34dada44e108/ENCFF393ZPD.bigBed\ color 181,145,0\ longLabel Stomach tissue female embryo 96 days H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR991ADX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF948FDH\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF133XXT ENCSR743DDX Signal bigWig Stomach tissue female embryo 96 days H3K27ac signal 2 4936 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/63afc793-7fbf-451d-8e86-d10718498b17/ENCFF133XXT.bigWig\ color 181,145,0\ longLabel Stomach tissue female embryo 96 days H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR743DDX Signal\ track wgEncodeReg4Epigenetics_ENCFF133XXT\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF221SGM ENCSR991ADX Signal bigWig HepG2 U2AF2 ENCSR991ADX signal 2 4936 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/17aa9440-4175-4925-8b26-2c6d84d65930/ENCFF221SGM.bigWig\ color 137,152,82\ longLabel HepG2 U2AF2 ENCSR991ADX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR991ADX Signal\ track wgEncodeReg4TfChip_ENCFF221SGM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF737ZMU ENCSR743GCE Peak bigBed 5 Uterus tissue female adult 51 years H3K4me3 peak 4 4937 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9ea79b7d-6bce-4007-8538-672426b13400/ENCFF737ZMU.bigBed\ color 255,0,0\ longLabel Uterus tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR743GCE Peak\ track wgEncodeReg4Epigenetics_ENCFF737ZMU\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF907BMO ENCSR991ELG Peak bigBed 5 K562 SP1 peaks 4 4937 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/c19d113c-c987-475d-8029-f760258dadb4/ENCFF907BMO.bigBed\ labelFields none\ longLabel K562 SP1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR991ELG Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF907BMO\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF181HLF ENCSR743GCE Signal bigWig Uterus tissue female adult 51 years H3K4me3 signal 2 4938 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/6bf7089d-3e1a-48d6-b07c-81c976a32ddb/ENCFF181HLF.bigWig\ color 255,0,0\ longLabel Uterus tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR743GCE Signal\ track wgEncodeReg4Epigenetics_ENCFF181HLF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF723RKS ENCSR991ELG Signal bigWig K562 SP1 ENCSR991ELG signal 2 4938 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/adb8019b-a270-4084-b5b0-1ea7ab36e303/ENCFF723RKS.bigWig\ color 254,75,173\ longLabel K562 SP1 ENCSR991ELG signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR991ELG Signal\ track wgEncodeReg4TfChip_ENCFF723RKS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF632CMF ENCSR743HTN Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 4939 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/c25eb46d-27e0-4881-9667-59e20f48132e/ENCFF632CMF.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR993LMB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF421ZJN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF448FEB ENCSR743HTN Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 4940 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/af8f2cc7-6c5a-4e78-9f23-1eb6a541aea2/ENCFF448FEB.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR743HTN Signal\ track wgEncodeReg4Epigenetics_ENCFF448FEB\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF644FHA ENCSR993LMB Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TGIF2 TGIF2 ENCSR993LMB signal 2 4940 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/a59a0878-f401-42fa-8bf3-51caf1e8e98f/ENCFF644FHA.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TGIF2 TGIF2 ENCSR993LMB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR993LMB Signal\ track wgEncodeReg4TfChip_ENCFF644FHA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF748ICQ ENCSR744YJR Peak bigBed 5 Thyroid gland tissue female adult 53 years CTCF peak 4 4941 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/539c76b3-9a30-4c55-9604-cf1a421dd213/ENCFF748ICQ.bigBed\ color 0,176,240\ labelFields none\ longLabel Thyroid gland tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR744YJR Peak\ track wgEncodeReg4Epigenetics_ENCFF748ICQ\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF515BWJ ENCSR994YLZ Peak bigBed 5 Liver tissue female child (4 years) YY1 peaks 4 4941 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/684f4e03-209b-41f2-b3f5-3a49bcdb935e/ENCFF515BWJ.bigBed\ labelFields none\ longLabel Liver tissue female child (4 years) YY1 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR994YLZ Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF515BWJ\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF603TNI ENCSR744YJR Signal bigWig Thyroid gland tissue female adult 53 years CTCF signal 2 4942 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/795d7919-3531-4491-a664-328d52bc13f2/ENCFF603TNI.bigWig\ color 0,176,240\ longLabel Thyroid gland tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR744YJR Signal\ track wgEncodeReg4Epigenetics_ENCFF603TNI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF131CIF ENCSR994YLZ Signal bigWig Liver tissue female child (4 years) YY1 ENCSR994YLZ signal 2 4942 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/06/e9724657-4646-4a22-b9da-a7cfa4013b76/ENCFF131CIF.bigWig\ color 137,152,82\ longLabel Liver tissue female child (4 years) YY1 ENCSR994YLZ signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR994YLZ Signal\ track wgEncodeReg4TfChip_ENCFF131CIF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF746GQI ENCSR745KUZ Peak bigBed 5 K562 treated with DMSO for 4 hours ATAC peak 4 4943 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/4e9f2293-dd84-499a-ac3c-9f7b1bd8aff7/ENCFF746GQI.bigBed\ color 2,199,185\ longLabel K562 treated with DMSO for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR745KUZ Peak\ track wgEncodeReg4Epigenetics_ENCFF746GQI\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF588UHP ENCSR995CFS Peak bigBed 5 A549 genetically modified (insertion) using CRISPR targeting H. sapiens HEYL HEYL peaks 4 4943 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/f4c3e165-8532-42db-ac0a-b72146217ca6/ENCFF588UHP.bigBed\ labelFields none\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HEYL HEYL peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR995CFS Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF588UHP\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF481ZPF ENCSR745KUZ Signal bigWig K562 treated with DMSO for 4 hours ATAC signal 2 4944 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/4cd8b623-7d8e-48be-88d6-623ab6351db6/ENCFF481ZPF.bigWig\ color 2,199,185\ longLabel K562 treated with DMSO for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR745KUZ Signal\ track wgEncodeReg4Epigenetics_ENCFF481ZPF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF851TCY ENCSR995CFS Signal bigWig A549 genetically modified (insertion) using CRISPR targeting H. sapiens HEYL HEYL ENCSR995CFS signal 2 4944 130 163 45 192 209 150 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/25/c24f8215-a643-4137-a055-f039e0308e24/ENCFF851TCY.bigWig\ color 130,163,45\ longLabel A549 genetically modified (insertion) using CRISPR targeting H. sapiens HEYL HEYL ENCSR995CFS signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR995CFS Signal\ track wgEncodeReg4TfChip_ENCFF851TCY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF399MXH ENCSR745TRI Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak 4 4945 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/dd1e61a5-e12c-4a99-9bbc-01ca88280586/ENCFF399MXH.bigBed\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR745TRI Peak\ track wgEncodeReg4Epigenetics_ENCFF399MXH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF558WWN ENCSR995FUM Peak bigBed 5 K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF79 ZNF79 peaks 4 4945 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/fb324977-049f-4a21-a3eb-5c9ae1151a4d/ENCFF558WWN.bigBed\ labelFields none\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF79 ZNF79 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR995FUM Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF558WWN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF125KUI ENCSR745TRI Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal 2 4946 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/93398bed-08b2-4d31-92cb-3d5d54e0a111/ENCFF125KUI.bigWig\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR745TRI Signal\ track wgEncodeReg4Epigenetics_ENCFF125KUI\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF623LTS ENCSR995FUM Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF79 ZNF79 ENCSR995FUM signal 2 4946 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/066ec326-afaa-4d60-ba92-a70ab1f68aa2/ENCFF623LTS.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF79 ZNF79 ENCSR995FUM signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR995FUM Signal\ track wgEncodeReg4TfChip_ENCFF623LTS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF790RUT ENCSR746AIX Peak bigBed 5 Multiple sclerosis immature natural killer cell H3K27ac peak 4 4947 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/169d2879-161e-4151-b1ea-ec34424aacc1/ENCFF790RUT.bigBed\ color 181,145,0\ longLabel Multiple sclerosis immature natural killer cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR746AIX Peak\ track wgEncodeReg4Epigenetics_ENCFF790RUT\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF767HVN ENCSR995QNB Peak bigBed 5 Peyer's patch tissue female adult (53 years) POLR2A peaks 4 4947 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/f7a4f37d-183b-4f4c-9fc0-90e67d9bfbb7/ENCFF767HVN.bigBed\ labelFields none\ longLabel Peyer's patch tissue female adult (53 years) POLR2A peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR995QNB Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF767HVN\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF862SBF ENCSR746AIX Signal bigWig Multiple sclerosis immature natural killer cell H3K27ac signal 2 4948 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/3a9e8978-52c0-42b1-a6db-535ecafeeccb/ENCFF862SBF.bigWig\ color 181,145,0\ longLabel Multiple sclerosis immature natural killer cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR746AIX Signal\ track wgEncodeReg4Epigenetics_ENCFF862SBF\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF568UZF ENCSR995QNB Signal bigWig Peyer's patch tissue female adult (53 years) POLR2A ENCSR995QNB signal 2 4948 98 98 41 176 176 148 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/b8e75cbe-5f1a-4a2a-8076-10805ced76e4/ENCFF568UZF.bigWig\ color 98,98,41\ longLabel Peyer's patch tissue female adult (53 years) POLR2A ENCSR995QNB signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR995QNB Signal\ track wgEncodeReg4TfChip_ENCFF568UZF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF645RUH ENCSR746RDJ Peak bigBed 5 Heart right ventricle tissue female embryo 101 days and female embryo 103 days DNase peak 4 4949 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/3c0e250a-1fbe-4ba3-a6b6-89768e449028/ENCFF645RUH.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue female embryo 101 days and female embryo 103 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR746RDJ Peak\ track wgEncodeReg4Epigenetics_ENCFF645RUH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF221WAF ENCSR996ESX Peak bigBed 5 K562 NFRKB peaks 4 4949 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/011d4819-680c-42b9-b9b8-9417dc6c7b29/ENCFF221WAF.bigBed\ labelFields none\ longLabel K562 NFRKB peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR996ESX Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF221WAF\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF209VTG ENCSR746RDJ Signal bigWig Heart right ventricle tissue female embryo 101 days and female embryo 103 days DNase signal 2 4950 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/7c20f55b-641f-4276-869a-1df78d853d13/ENCFF209VTG.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue female embryo 101 days and female embryo 103 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR746RDJ Signal\ track wgEncodeReg4Epigenetics_ENCFF209VTG\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF227FLD ENCSR996ESX Signal bigWig K562 NFRKB ENCSR996ESX signal 2 4950 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/84dda09a-c573-49ad-b044-3492073e233a/ENCFF227FLD.bigWig\ color 254,75,173\ longLabel K562 NFRKB ENCSR996ESX signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR996ESX Signal\ track wgEncodeReg4TfChip_ENCFF227FLD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF957TUH ENCSR746ZPP Peak bigBed 5 L1-S8R DNase peak 4 4951 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/1a9a63cd-5b79-45cb-8d94-b02cdd8afc86/ENCFF957TUH.bigBed\ color 6,218,147\ labelFields none\ longLabel L1-S8R DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR746ZPP Peak\ track wgEncodeReg4Epigenetics_ENCFF957TUH\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF574FZA ENCSR996FYT Peak bigBed 5 HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF202 ZNF202 peaks 4 4951 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/6557156e-f6a9-4e0b-882f-112b166a8e1b/ENCFF574FZA.bigBed\ labelFields none\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF202 ZNF202 peaks\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR996FYT Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF574FZA\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF505IPS ENCSR746ZPP Signal bigWig L1-S8R DNase signal 2 4952 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/5fcb0858-1f30-4119-ad89-fe5465306347/ENCFF505IPS.bigWig\ color 6,218,147\ longLabel L1-S8R DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR746ZPP Signal\ track wgEncodeReg4Epigenetics_ENCFF505IPS\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF453FOQ ENCSR996FYT Signal bigWig HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF202 ZNF202 ENCSR996FYT signal 2 4952 92 161 153 173 208 204 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/05/25d7e9a8-984f-4a35-9492-2800a86ae250/ENCFF453FOQ.bigWig\ color 92,161,153\ longLabel HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF202 ZNF202 ENCSR996FYT signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR996FYT Signal\ track wgEncodeReg4TfChip_ENCFF453FOQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF233NSP ENCSR747HAM Peak bigBed 5 Ectodermal cell originated from HUES64 H3K27ac peak 4 4953 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/f488a1f5-5fdf-4b96-ad73-7c93af6a6857/ENCFF233NSP.bigBed\ color 181,145,0\ longLabel Ectodermal cell originated from HUES64 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR747HAM Peak\ track wgEncodeReg4Epigenetics_ENCFF233NSP\ type bigBed 5\ visibility squish\ wgEncodeReg4TfChip_ENCFF689EWI ENCSR998AJK Peak bigBed 5 K562 NRF1 peaks 4 4953 0 0 0 127 127 127 1 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/11ea6ae7-a55c-46f4-9776-293de86be5e5/ENCFF689EWI.bigBed\ labelFields none\ longLabel K562 NRF1 peaks\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR998OMC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF984WXL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF867HAD ENCSR747SEU Signal bigWig Heart left ventricle tissue female adult 46 years DNase signal 2 4958 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/c3a8bb92-ecb6-4314-9f2e-8e7fb583368c/ENCFF867HAD.bigWig\ color 6,218,147\ longLabel Heart left ventricle tissue female adult 46 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR747SEU Signal\ track wgEncodeReg4Epigenetics_ENCFF867HAD\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF636QDP ENCSR998OMC Signal bigWig K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFCP2 TFCP2 ENCSR998OMC signal 2 4958 254 75 173 254 165 214 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/03/32aca827-7028-4282-9856-2ba3c327ad1b/ENCFF636QDP.bigWig\ color 254,75,173\ longLabel K562 genetically modified (insertion) using CRISPR targeting H. sapiens TFCP2 TFCP2 ENCSR998OMC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR998OMC Signal\ track wgEncodeReg4TfChip_ENCFF636QDP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF132XGK ENCSR747VED Peak bigBed 5 Pancreas tissue male adult 34 years H3K4me3 peak 4 4959 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/9c12a688-6868-4f80-bb4b-c75804b91f4f/ENCFF132XGK.bigBed\ color 255,0,0\ longLabel Pancreas tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR998YJI Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF923HZL\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF317PKP ENCSR747VED Signal bigWig Pancreas tissue male adult 34 years H3K4me3 signal 2 4960 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/e9dda3f4-567e-4a1d-972a-68be048ceb09/ENCFF317PKP.bigWig\ color 255,0,0\ longLabel Pancreas tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR747VED Signal\ track wgEncodeReg4Epigenetics_ENCFF317PKP\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF787GND ENCSR998YJI Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF503 ZNF503 ENCSR998YJI signal 2 4960 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/06/f66bed8f-70a5-4446-b0a5-12b6092da820/ENCFF787GND.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF503 ZNF503 ENCSR998YJI signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR998YJI Signal\ track wgEncodeReg4TfChip_ENCFF787GND\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF747QSK ENCSR747ZXN Peak bigBed 5 Immature natural killer cell H3K27ac peak 4 4961 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/2b5e00a7-4234-4e48-a9e1-254764df2e0c/ENCFF747QSK.bigBed\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR999JKC Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF374TCI\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF463VKU ENCSR747ZXN Signal bigWig Immature natural killer cell H3K27ac signal 2 4962 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/09123649-2ea6-4a41-85f5-d51d109f599f/ENCFF463VKU.bigWig\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR747ZXN Signal\ track wgEncodeReg4Epigenetics_ENCFF463VKU\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF686NAT ENCSR999JKC Signal bigWig HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA3 HOXA3 ENCSR999JKC signal 2 4962 137 152 82 196 203 168 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/2d08cbbe-b075-488e-8ba9-3bb7efe57e13/ENCFF686NAT.bigWig\ color 137,152,82\ longLabel HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HOXA3 HOXA3 ENCSR999JKC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR999JKC Signal\ track wgEncodeReg4TfChip_ENCFF686NAT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF647YNV ENCSR748RBT Peak bigBed 5 Prostate gland tissue male adult 54 years H3K4me3 peak 4 4963 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/6d5be860-2f9f-4828-ae0e-dd16b7606add/ENCFF647YNV.bigBed\ color 255,0,0\ longLabel Prostate gland tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR999QVR Peak\ spectrum on\ track wgEncodeReg4TfChip_ENCFF566ZPY\ type bigBed 5\ useScore 1\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF466ENV ENCSR748RBT Signal bigWig Prostate gland tissue male adult 54 years H3K4me3 signal 2 4964 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/294ab811-05da-4a4c-be43-bd66bba01725/ENCFF466ENV.bigWig\ color 255,0,0\ longLabel Prostate gland tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR748RBT Signal\ track wgEncodeReg4Epigenetics_ENCFF466ENV\ type bigWig\ visibility full\ wgEncodeReg4TfChip_ENCFF708ISH ENCSR999QVR Signal bigWig Uterus tissue female adult (51 years) POLR2A ENCSR999QVR signal 2 4964 186 111 165 220 183 210 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/30/25b1d6f1-f42a-46b3-a66d-a2d649ad5277/ENCFF708ISH.bigWig\ color 186,111,165\ longLabel Uterus tissue female adult (51 years) POLR2A ENCSR999QVR signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4TfChip off\ shortLabel ENCSR999QVR Signal\ track wgEncodeReg4TfChip_ENCFF708ISH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF719QVL ENCSR748TFF Peak bigBed 5 Body of pancreas tissue female adult 53 years H3K27ac peak 4 4965 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/932dd807-4bb8-43d9-861e-549146e50bcb/ENCFF719QVL.bigBed\ color 181,145,0\ longLabel Body of pancreas tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR748TFF Peak\ track wgEncodeReg4Epigenetics_ENCFF719QVL\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF229WEL ENCSR748TFF Signal bigWig Body of pancreas tissue female adult 53 years H3K27ac signal 2 4966 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/f3e249f4-6a16-4953-a47d-41de69859fa3/ENCFF229WEL.bigWig\ color 181,145,0\ longLabel Body of pancreas tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR748TFF Signal\ track wgEncodeReg4Epigenetics_ENCFF229WEL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF521SKR ENCSR749BWV Peak bigBed 5 Heart tissue female embryo 116 days and female embryo 98 days DNase peak 4 4967 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/ef5ca54e-46e3-4945-92ce-f847d732bf56/ENCFF521SKR.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue female embryo 116 days and female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR749BWV Peak\ track wgEncodeReg4Epigenetics_ENCFF521SKR\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF147PNW ENCSR749BWV Signal bigWig Heart tissue female embryo 116 days and female embryo 98 days DNase signal 2 4968 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/f339e71c-3ea0-4106-8718-38df47df1b12/ENCFF147PNW.bigWig\ color 6,218,147\ longLabel Heart tissue female embryo 116 days and female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR749BWV Signal\ track wgEncodeReg4Epigenetics_ENCFF147PNW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF297ZCG ENCSR749MUH Peak bigBed 5 Thyroid gland tissue male adult 37 years DNase peak 4 4969 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/a96c6af0-9b25-4485-ac1b-30424eb4d535/ENCFF297ZCG.bigBed\ color 6,218,147\ labelFields none\ longLabel Thyroid gland tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR769FOC Peak\ track wgEncodeReg4Epigenetics_ENCFF547WFT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF907RYE ENCSR769FOC Signal bigWig PC-9 H3K27ac signal 2 5063 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/12/2e38e657-88a4-4d1c-a6e0-73055b3bb2bb/ENCFF907RYE.bigWig\ color 181,145,0\ longLabel PC-9 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR769FOC Signal\ track wgEncodeReg4Epigenetics_ENCFF907RYE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF471AZS ENCSR769WKR Peak bigBed 5 Transverse colon tissue female adult 53 years CTCF peak 4 5064 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/fac71942-e17f-428a-be04-f6d1772f0940/ENCFF471AZS.bigBed\ color 0,176,240\ labelFields none\ longLabel Transverse colon tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR769WKR Peak\ track wgEncodeReg4Epigenetics_ENCFF471AZS\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF493XMW ENCSR769WKR Signal bigWig Transverse colon tissue female adult 53 years CTCF signal 2 5065 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/cdd89b70-afb5-4b25-8bc1-5b418a2c1bb4/ENCFF493XMW.bigWig\ color 0,176,240\ longLabel Transverse colon tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR769WKR Signal\ track wgEncodeReg4Epigenetics_ENCFF493XMW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF609BJQ ENCSR770DEN Peak bigBed 5 Fibroblast of skin of scalp male embryo 97 days DNase peak 4 5066 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/055b172c-ea9f-4bb6-8e11-32016bf6af23/ENCFF609BJQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Fibroblast of skin of scalp male embryo 97 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770DEN Peak\ track wgEncodeReg4Epigenetics_ENCFF609BJQ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF250SQE ENCSR770DEN Signal bigWig Fibroblast of skin of scalp male embryo 97 days DNase signal 2 5067 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/c4800745-cdce-4fb8-acce-ed9fd2c03659/ENCFF250SQE.bigWig\ color 6,218,147\ longLabel Fibroblast of skin of scalp male embryo 97 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770DEN Signal\ track wgEncodeReg4Epigenetics_ENCFF250SQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF678WUB ENCSR770IWO Peak bigBed 5 Adrenal gland tissue female adult 53 years CTCF peak 4 5068 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/02f889c2-3bc0-4fa7-9aa1-a974b792637b/ENCFF678WUB.bigBed\ color 0,176,240\ labelFields none\ longLabel Adrenal gland tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770IWO Peak\ track wgEncodeReg4Epigenetics_ENCFF678WUB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF419QIY ENCSR770IWO Signal bigWig Adrenal gland tissue female adult 53 years CTCF signal 2 5069 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/a1a3c5ff-6970-4894-8bfa-b0dbf670457d/ENCFF419QIY.bigWig\ color 0,176,240\ longLabel Adrenal gland tissue female adult 53 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770IWO Signal\ track wgEncodeReg4Epigenetics_ENCFF419QIY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF442XOT ENCSR770JCP Peak bigBed 5 Posterior cingulate gyrus tissue female adult 75 years DNase peak 4 5070 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/0edb9f9b-f7cb-4e6c-bc67-c94681e73d46/ENCFF442XOT.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 75 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770JCP Peak\ track wgEncodeReg4Epigenetics_ENCFF442XOT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF514GFX ENCSR770JCP Signal bigWig Posterior cingulate gyrus tissue female adult 75 years DNase signal 2 5071 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/48cd7e6d-8ce5-4d6c-a834-512ef2943e46/ENCFF514GFX.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 75 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770JCP Signal\ track wgEncodeReg4Epigenetics_ENCFF514GFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF520OMY ENCSR770OTB Peak bigBed 5 Left ventricle myocardium inferior tissue male adult 60 years DNase peak 4 5072 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/40af9594-0a65-48bc-a619-0722873ebf2d/ENCFF520OMY.bigBed\ color 6,218,147\ labelFields none\ longLabel Left ventricle myocardium inferior tissue male adult 60 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770OTB Peak\ track wgEncodeReg4Epigenetics_ENCFF520OMY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644JWK ENCSR770OTB Signal bigWig Left ventricle myocardium inferior tissue male adult 60 years DNase signal 2 5073 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/ce49d837-2c9f-4eca-bad8-167dfc0630fd/ENCFF644JWK.bigWig\ color 6,218,147\ longLabel Left ventricle myocardium inferior tissue male adult 60 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR770OTB Signal\ track wgEncodeReg4Epigenetics_ENCFF644JWK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF959JXU ENCSR771DAX Peak bigBed 5 Globus pallidus tissue male adult 78 years and male adult 84 years DNase peak 4 5074 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/79d2be7e-cab1-40e4-8a7c-49c4d1c47682/ENCFF959JXU.bigBed\ color 6,218,147\ labelFields none\ longLabel Globus pallidus tissue male adult 78 years and male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR771DAX Peak\ track wgEncodeReg4Epigenetics_ENCFF959JXU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF129CHK ENCSR771DAX Signal bigWig Globus pallidus tissue male adult 78 years and male adult 84 years DNase signal 2 5075 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/8be344c2-582a-4b52-be55-0d06df190a42/ENCFF129CHK.bigWig\ color 6,218,147\ longLabel Globus pallidus tissue male adult 78 years and male adult 84 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR771DAX Signal\ track wgEncodeReg4Epigenetics_ENCFF129CHK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF702HVU ENCSR771YJT Peak bigBed 5 Tibial nerve tissue female adult 53 years H3K27ac peak 4 5076 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/1df336fd-1259-408d-948e-6fcf4c4e2878/ENCFF702HVU.bigBed\ color 181,145,0\ longLabel Tibial nerve tissue female adult 53 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR771YJT Peak\ track wgEncodeReg4Epigenetics_ENCFF702HVU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF402CVL ENCSR771YJT Signal bigWig Tibial nerve tissue female adult 53 years H3K27ac signal 2 5077 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/79f16498-e8cc-4bb1-a4e8-6f806ff858b9/ENCFF402CVL.bigWig\ color 181,145,0\ longLabel Tibial nerve tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR771YJT Signal\ track wgEncodeReg4Epigenetics_ENCFF402CVL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF154XAB ENCSR772ABL Peak bigBed 5 Heart right ventricle tissue female adult 59 years H3K27ac peak 4 5078 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/0d86f133-8bcd-45cb-a83c-2a6c6c9808d6/ENCFF154XAB.bigBed\ color 181,145,0\ longLabel Heart right ventricle tissue female adult 59 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR772ABL Peak\ track wgEncodeReg4Epigenetics_ENCFF154XAB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF996ISW ENCSR772ABL Signal bigWig Heart right ventricle tissue female adult 59 years H3K27ac signal 2 5079 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/fb080164-4c30-4eaf-8192-afc0448bcfc0/ENCFF996ISW.bigWig\ color 181,145,0\ longLabel Heart right ventricle tissue female adult 59 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR772ABL Signal\ track wgEncodeReg4Epigenetics_ENCFF996ISW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF616IJV ENCSR772HUG Peak bigBed 5 Common myeloid progenitor, CD34-positive male adult 37 years DNase peak 4 5080 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/03ceb4eb-a77c-40b2-8076-aebde9f143b3/ENCFF616IJV.bigBed\ color 6,218,147\ labelFields none\ longLabel Common myeloid progenitor, CD34-positive male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR772HUG Peak\ track wgEncodeReg4Epigenetics_ENCFF616IJV\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF972XXJ ENCSR772HUG Signal bigWig Common myeloid progenitor, CD34-positive male adult 37 years DNase signal 2 5081 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ce7d96a8-b7a6-4b22-bfab-60a9fe761b5b/ENCFF972XXJ.bigWig\ color 6,218,147\ longLabel Common myeloid progenitor, CD34-positive male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR772HUG Signal\ track wgEncodeReg4Epigenetics_ENCFF972XXJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF683HYK ENCSR773JBP Peak bigBed 5 Esophagus squamous epithelium tissue female adult 53 years CTCF peak 4 5082 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/21de6247-fd57-47cb-9b8e-eaae84b85d38/ENCFF683HYK.bigBed\ color 0,176,240\ labelFields none\ longLabel Esophagus squamous epithelium tissue female adult 53 years CTCF peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR778ZPK Peak\ track wgEncodeReg4Epigenetics_ENCFF888ERQ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF541CSJ ENCSR778ZPK Signal bigWig Heart left ventricle tissue female adult 59 years CTCF signal 2 5127 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/74b2d91e-1e9c-46d1-ab40-cb9f14414551/ENCFF541CSJ.bigWig\ color 0,176,240\ longLabel Heart left ventricle tissue female adult 59 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR778ZPK Signal\ track wgEncodeReg4Epigenetics_ENCFF541CSJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF403LNW ENCSR779YTI Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 5128 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/74326197-23f5-49a0-888c-b8f9c80efa41/ENCFF403LNW.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR780PLN Peak\ track wgEncodeReg4Epigenetics_ENCFF159JFM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF017WYO ENCSR780PLN Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 ATAC signal 2 5139 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/1949eb64-5b7c-4964-8b71-fc2f1df8faa8/ENCFF017WYO.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR780PLN Signal\ track wgEncodeReg4Epigenetics_ENCFF017WYO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF248XHU ENCSR782SSS Peak bigBed 5 Stomach tissue male adult 34 years DNase peak 4 5140 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/be036f17-2207-4af2-9d61-4456a55593d8/ENCFF248XHU.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue male adult 34 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR782SSS Peak\ track wgEncodeReg4Epigenetics_ENCFF248XHU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF604WCR ENCSR782SSS Signal bigWig Stomach tissue male adult 34 years DNase signal 2 5141 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/fc340ef2-adfb-4ea5-bc14-682ab8c0974c/ENCFF604WCR.bigWig\ color 6,218,147\ longLabel Stomach tissue male adult 34 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR782SSS Signal\ track wgEncodeReg4Epigenetics_ENCFF604WCR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF845QEZ ENCSR782XFY Peak bigBed 5 Eye tissue embryo 56 days and male embryo 76 days DNase peak 4 5142 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/5ea2edb2-4426-4182-916c-be53a854249a/ENCFF845QEZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Eye tissue embryo 56 days and male embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR782XFY Peak\ track wgEncodeReg4Epigenetics_ENCFF845QEZ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF179SLC ENCSR782XFY Signal bigWig Eye tissue embryo 56 days and male embryo 76 days DNase signal 2 5143 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/4be34e3f-67c3-4bfd-ba30-5d57f091c1a7/ENCFF179SLC.bigWig\ color 6,218,147\ longLabel Eye tissue embryo 56 days and male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR782XFY Signal\ track wgEncodeReg4Epigenetics_ENCFF179SLC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF845RVB ENCSR783OCW Peak bigBed 5 Esophagus squamous epithelium tissue male adult 37 years DNase peak 4 5144 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/a12fb635-1d31-404d-a94d-d178552721f7/ENCFF845RVB.bigBed\ color 6,218,147\ labelFields none\ longLabel Esophagus squamous epithelium tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR783OCW Peak\ track wgEncodeReg4Epigenetics_ENCFF845RVB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF841VBI ENCSR783OCW Signal bigWig Esophagus squamous epithelium tissue male adult 37 years DNase signal 2 5145 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/74f03c97-2dc1-41e4-8fdb-bb1f17e30235/ENCFF841VBI.bigWig\ color 6,218,147\ longLabel Esophagus squamous epithelium tissue male adult 37 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR783OCW Signal\ track wgEncodeReg4Epigenetics_ENCFF841VBI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF495OOX ENCSR783VHL Peak bigBed 5 Nephron organoid female embryo 5 days, 35 days post differentiation H3K4me3 peak 4 5146 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/27/4cbda797-4d07-4a90-bbbd-71886bdeaf0f/ENCFF495OOX.bigBed\ color 255,0,0\ longLabel Nephron organoid female embryo 5 days, 35 days post differentiation H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR783VHL Peak\ track wgEncodeReg4Epigenetics_ENCFF495OOX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF726YJF ENCSR783VHL Signal bigWig Nephron organoid female embryo 5 days, 35 days post differentiation H3K4me3 signal 2 5147 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/91f0fd8e-612e-4f60-ba22-9f689b5bc674/ENCFF726YJF.bigWig\ color 255,0,0\ longLabel Nephron organoid female embryo 5 days, 35 days post differentiation H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR783VHL Signal\ track wgEncodeReg4Epigenetics_ENCFF726YJF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF882DSF ENCSR784GVR Peak bigBed 5 Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak 4 5148 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/aea2e220-20e1-4508-a1d2-61d38230cb18/ENCFF882DSF.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR784GVR Peak\ track wgEncodeReg4Epigenetics_ENCFF882DSF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF354KNF ENCSR784GVR Signal bigWig Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 5149 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/0a56f3c6-6d77-43f0-85c5-8951770c930e/ENCFF354KNF.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR784GVR Signal\ track wgEncodeReg4Epigenetics_ENCFF354KNF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF177GDV ENCSR784RMA Peak bigBed 5 T-cell male adult 36 years DNase peak 4 5150 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/968380ba-3c19-4a6d-8d3e-dad8e79888bc/ENCFF177GDV.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 36 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR790NQG Peak\ track wgEncodeReg4Epigenetics_ENCFF679KGJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF651MOI ENCSR790NQG Signal bigWig IgD-negative memory B cell H3K4me3 signal 2 5197 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/ae190a03-5dc8-4a1f-8de0-73c68dd54076/ENCFF651MOI.bigWig\ color 255,0,0\ longLabel IgD-negative memory B cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR790NQG Signal\ track wgEncodeReg4Epigenetics_ENCFF651MOI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF060HCV ENCSR791BHE Peak bigBed 5 Gastrocnemius medialis tissue male adult 37 years DNase peak 4 5198 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/36eaf66f-1f29-424a-b2a3-9aad5ac789be/ENCFF060HCV.bigBed\ color 6,218,147\ labelFields none\ longLabel Gastrocnemius medialis tissue male adult 37 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791CAF Peak\ track wgEncodeReg4Epigenetics_ENCFF859OAX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF044RVB ENCSR791CAF Signal bigWig Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours H3K4me3 signal 2 5203 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/05/c9411c19-c8a0-462c-a94d-cb4e418591e7/ENCFF044RVB.bigWig\ color 255,0,0\ longLabel Activated B cell male adult 22 years treated with 0.5 μM CpG ODN for 24 hours H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791CAF Signal\ track wgEncodeReg4Epigenetics_ENCFF044RVB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF348GAX ENCSR791GCO Peak bigBed 5 Heart right ventricle tissue male adult 34 years H3K4me3 peak 4 5204 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/49c2ba3d-753a-403a-b8be-bfe97e7f6928/ENCFF348GAX.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791GCO Peak\ track wgEncodeReg4Epigenetics_ENCFF348GAX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF644MVM ENCSR791GCO Signal bigWig Heart right ventricle tissue male adult 34 years H3K4me3 signal 2 5205 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f39444b8-92ca-4097-aa60-d8c9862ba945/ENCFF644MVM.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791GCO Signal\ track wgEncodeReg4Epigenetics_ENCFF644MVM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF031TFU ENCSR791ISZ Peak bigBed 5 Psoas muscle tissue male adult 34 years H3K27ac peak 4 5206 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/c8ee33e0-1f22-4e47-853d-ab32aca6a0cb/ENCFF031TFU.bigBed\ color 181,145,0\ longLabel Psoas muscle tissue male adult 34 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791ISZ Peak\ track wgEncodeReg4Epigenetics_ENCFF031TFU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF584CKL ENCSR791ISZ Signal bigWig Psoas muscle tissue male adult 34 years H3K27ac signal 2 5207 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/cb169f25-4807-4a1a-be3b-12240b2bea81/ENCFF584CKL.bigWig\ color 181,145,0\ longLabel Psoas muscle tissue male adult 34 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791ISZ Signal\ track wgEncodeReg4Epigenetics_ENCFF584CKL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF832FQW ENCSR791KFQ Peak bigBed 5 Right atrium auricular region tissue female adult 53 years H3K4me3 peak 4 5208 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/79827b1b-2183-4ed7-9487-e2c9d8221647/ENCFF832FQW.bigBed\ color 255,0,0\ longLabel Right atrium auricular region tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791KFQ Peak\ track wgEncodeReg4Epigenetics_ENCFF832FQW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF646DAW ENCSR791KFQ Signal bigWig Right atrium auricular region tissue female adult 53 years H3K4me3 signal 2 5209 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/31ad1995-1b53-4e1d-8558-28d58ec65692/ENCFF646DAW.bigWig\ color 255,0,0\ longLabel Right atrium auricular region tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR791KFQ Signal\ track wgEncodeReg4Epigenetics_ENCFF646DAW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF520JUZ ENCSR792IJA Peak bigBed 5 Small intestine tissue male adult 34 years H3K4me3 peak 4 5210 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/092d2cbe-5b3d-459c-9c8a-c0994c0197c2/ENCFF520JUZ.bigBed\ color 255,0,0\ longLabel Small intestine tissue male adult 34 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792NZO Peak\ track wgEncodeReg4Epigenetics_ENCFF656QKV\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF825RFP ENCSR792NZO Signal bigWig IPS-18c H3K4me3 signal 2 5213 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/ef93575d-b1de-42c1-b85e-b9e582125c4e/ENCFF825RFP.bigWig\ color 255,0,0\ longLabel IPS-18c H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792NZO Signal\ track wgEncodeReg4Epigenetics_ENCFF825RFP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF917LYO ENCSR792QQE Peak bigBed 5 Heart right ventricle tissue male adult 54 years DNase peak 4 5214 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/381a70e9-74ab-4213-99d2-cf1f91ceee95/ENCFF917LYO.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792QQE Peak\ track wgEncodeReg4Epigenetics_ENCFF917LYO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF956IPA ENCSR792QQE Signal bigWig Heart right ventricle tissue male adult 54 years DNase signal 2 5215 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/db2b2173-9c65-4574-9b2b-b3d4314db8a0/ENCFF956IPA.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue male adult 54 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792QQE Signal\ track wgEncodeReg4Epigenetics_ENCFF956IPA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF831CWE ENCSR792VLP Peak bigBed 5 Transverse colon tissue female adult 51 years H3K27ac peak 4 5216 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/1c372751-b65e-43f8-88e8-23ce549c2b26/ENCFF831CWE.bigBed\ color 181,145,0\ longLabel Transverse colon tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792VLP Peak\ track wgEncodeReg4Epigenetics_ENCFF831CWE\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF741NZM ENCSR792VLP Signal bigWig Transverse colon tissue female adult 51 years H3K27ac signal 2 5217 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/9ee652b6-46d7-4910-9f90-a8382df2d580/ENCFF741NZM.bigWig\ color 181,145,0\ longLabel Transverse colon tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792VLP Signal\ track wgEncodeReg4Epigenetics_ENCFF741NZM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF278CWL ENCSR792ZXA Peak bigBed 5 Kidney tissue embryo 59 days and female embryo 59 days DNase peak 4 5218 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/878c27c4-62ad-4023-a875-32285028b439/ENCFF278CWL.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue embryo 59 days and female embryo 59 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792ZXA Peak\ track wgEncodeReg4Epigenetics_ENCFF278CWL\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF828QRO ENCSR792ZXA Signal bigWig Kidney tissue embryo 59 days and female embryo 59 days DNase signal 2 5219 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/19ae5399-236b-4ec8-9423-8ca84a25dc90/ENCFF828QRO.bigWig\ color 6,218,147\ longLabel Kidney tissue embryo 59 days and female embryo 59 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR792ZXA Signal\ track wgEncodeReg4Epigenetics_ENCFF828QRO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF994ZMG ENCSR793IKH Peak bigBed 5 Sigmoid colon tissue female adult 51 years H3K4me3 peak 4 5220 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/d57a7007-0093-4fbe-807a-86fc7416cf6d/ENCFF994ZMG.bigBed\ color 255,0,0\ longLabel Sigmoid colon tissue female adult 51 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR793IKH Peak\ track wgEncodeReg4Epigenetics_ENCFF994ZMG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF800VAP ENCSR793IKH Signal bigWig Sigmoid colon tissue female adult 51 years H3K4me3 signal 2 5221 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/6a150527-8fd0-4b35-a96a-d8ff019f4d23/ENCFF800VAP.bigWig\ color 255,0,0\ longLabel Sigmoid colon tissue female adult 51 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR793IKH Signal\ track wgEncodeReg4Epigenetics_ENCFF800VAP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF420SAZ ENCSR793YAD Peak bigBed 5 Tibial nerve tissue female adult 51 years CTCF peak 4 5222 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/22bd0e91-d6d7-4bc4-b5e1-452277b118b9/ENCFF420SAZ.bigBed\ color 0,176,240\ labelFields none\ longLabel Tibial nerve tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR793YAD Peak\ track wgEncodeReg4Epigenetics_ENCFF420SAZ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF670COF ENCSR793YAD Signal bigWig Tibial nerve tissue female adult 51 years CTCF signal 2 5223 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/3011a96f-7c68-4ac6-ac86-b2cdd7b59cfe/ENCFF670COF.bigWig\ color 0,176,240\ longLabel Tibial nerve tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR793YAD Signal\ track wgEncodeReg4Epigenetics_ENCFF670COF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF306FOT ENCSR793YFK Peak bigBed 5 K562 treated with 1 μM NCT-503 for 24 hours ATAC peak 4 5224 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/544d525d-e692-4b3c-9bae-ada9bc980619/ENCFF306FOT.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM NCT-503 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR793YFK Peak\ track wgEncodeReg4Epigenetics_ENCFF306FOT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF023XLW ENCSR793YFK Signal bigWig K562 treated with 1 μM NCT-503 for 24 hours ATAC signal 2 5225 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/e18a7391-c6f2-450c-a855-5ec5807e324d/ENCFF023XLW.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM NCT-503 for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR793YFK Signal\ track wgEncodeReg4Epigenetics_ENCFF023XLW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF390EBK ENCSR794KUS Peak bigBed 5 Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase peak 4 5226 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/3adf3f7a-3434-45ee-8fa9-2feee94e7199/ENCFF390EBK.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR794KUS Peak\ track wgEncodeReg4Epigenetics_ENCFF390EBK\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF390FDZ ENCSR794KUS Signal bigWig Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase signal 2 5227 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/d85a01cd-a9df-4aee-b6f1-e66a060c2e5b/ENCFF390FDZ.bigWig\ color 6,218,147\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR794KUS Signal\ track wgEncodeReg4Epigenetics_ENCFF390FDZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF943RIX ENCSR794TLA Peak bigBed 5 Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase peak 4 5228 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/fd79daaa-48df-4692-b092-9abf0efbc9bb/ENCFF943RIX.bigBed\ color 6,218,147\ labelFields none\ longLabel Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR794TLA Peak\ track wgEncodeReg4Epigenetics_ENCFF943RIX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF308ZZS ENCSR794TLA Signal bigWig Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase signal 2 5229 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/02eb9ec5-220e-42d5-8a4c-0dab74bebe63/ENCFF308ZZS.bigWig\ color 6,218,147\ longLabel Natural killer cell female adult 41 years treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR794TLA Signal\ track wgEncodeReg4Epigenetics_ENCFF308ZZS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF496OJD ENCSR795NQU Peak bigBed 5 Activated naive CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours H3K27ac peak 4 5230 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/8439879c-a422-4997-82a5-32ce0e798eff/ENCFF496OJD.bigBed\ color 181,145,0\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR795NQU Peak\ track wgEncodeReg4Epigenetics_ENCFF496OJD\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF819JGV ENCSR795NQU Signal bigWig Activated naive CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours H3K27ac signal 2 5231 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/4d6661b2-cc1c-4b7e-8fe6-e4e31d27dd6e/ENCFF819JGV.bigWig\ color 181,145,0\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR795NQU Signal\ track wgEncodeReg4Epigenetics_ENCFF819JGV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF950AWO ENCSR795VEN Peak bigBed 5 Nonobstructive coronary artery disease liver tissue male adult 32 years H3K4me3 peak 4 5232 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/a499e4bf-47f3-47b2-abde-e22f37b75662/ENCFF950AWO.bigBed\ color 255,0,0\ longLabel Nonobstructive coronary artery disease liver tissue male adult 32 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR795VEN Peak\ track wgEncodeReg4Epigenetics_ENCFF950AWO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF471TIS ENCSR795VEN Signal bigWig Nonobstructive coronary artery disease liver tissue male adult 32 years H3K4me3 signal 2 5233 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/11/554b00cf-3e54-485b-baee-2dec819fc81c/ENCFF471TIS.bigWig\ color 255,0,0\ longLabel Nonobstructive coronary artery disease liver tissue male adult 32 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR795VEN Signal\ track wgEncodeReg4Epigenetics_ENCFF471TIS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF676ZZP ENCSR795ZKB Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak 4 5234 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/f4b3285b-35c5-4790-9461-f2e1d749deba/ENCFF676ZZP.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR795ZKB Peak\ track wgEncodeReg4Epigenetics_ENCFF676ZZP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF656TCI ENCSR795ZKB Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal 2 5235 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/d88e8973-35e2-4b52-ac18-621fbc94a14d/ENCFF656TCI.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR795ZKB Signal\ track wgEncodeReg4Epigenetics_ENCFF656TCI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF069WTO ENCSR796CSH Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 peak 4 5236 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/2f9fc5c1-7d95-4613-bc44-9e48f50e5705/ENCFF069WTO.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796CSH Peak\ track wgEncodeReg4Epigenetics_ENCFF069WTO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF220LVT ENCSR796CSH Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 signal 2 5237 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/45f94a18-63fc-48fe-85f3-6a61445de084/ENCFF220LVT.bigWig\ color 255,0,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796CSH Signal\ track wgEncodeReg4Epigenetics_ENCFF220LVT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF642YZU ENCSR796FCS Peak bigBed 5 CD14-positive monocyte male adult 37 years H3K4me3 peak 4 5238 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/3a277e8e-cc43-40d7-b650-21ff0e8b20c3/ENCFF642YZU.bigBed\ color 255,0,0\ longLabel CD14-positive monocyte male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796FCS Peak\ track wgEncodeReg4Epigenetics_ENCFF642YZU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF739LQS ENCSR796FCS Signal bigWig CD14-positive monocyte male adult 37 years H3K4me3 signal 2 5239 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/1f3d4689-6421-4543-b21b-53738a2d5f31/ENCFF739LQS.bigWig\ color 255,0,0\ longLabel CD14-positive monocyte male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796FCS Signal\ track wgEncodeReg4Epigenetics_ENCFF739LQS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF319ZBG ENCSR796SJV Peak bigBed 5 Large intestine tissue female embryo 98 days DNase peak 4 5240 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/5138c042-09ce-464e-ade2-594feab3424d/ENCFF319ZBG.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796SJV Peak\ track wgEncodeReg4Epigenetics_ENCFF319ZBG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF988XLP ENCSR796SJV Signal bigWig Large intestine tissue female embryo 98 days DNase signal 2 5241 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/f3adf80a-c018-48b1-be57-f2477a78c003/ENCFF988XLP.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 98 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796SJV Signal\ track wgEncodeReg4Epigenetics_ENCFF988XLP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF439PAQ ENCSR796YOJ Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak 4 5242 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/63767212-c9e7-4cb1-9756-db48c9bcf97c/ENCFF439PAQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796YOJ Peak\ track wgEncodeReg4Epigenetics_ENCFF439PAQ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF686DIT ENCSR796YOJ Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal 2 5243 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/c6e9d603-c1c8-43f8-990f-db2a2d2d3fc1/ENCFF686DIT.bigWig\ color 6,218,147\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR796YOJ Signal\ track wgEncodeReg4Epigenetics_ENCFF686DIT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF886LOB ENCSR797FIM Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 5244 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/62480426-f50d-4099-a320-db073eed81ac/ENCFF886LOB.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR797FIM Peak\ track wgEncodeReg4Epigenetics_ENCFF886LOB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF192IUT ENCSR797FIM Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 5245 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/96e29313-159e-47f7-8566-03e11f994895/ENCFF192IUT.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR797FIM Signal\ track wgEncodeReg4Epigenetics_ENCFF192IUT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF064SHM ENCSR797POI Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K27ac peak 4 5246 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/229067fe-5a6a-446f-9204-367739db035f/ENCFF064SHM.bigBed\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR797POI Peak\ track wgEncodeReg4Epigenetics_ENCFF064SHM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF616UIE ENCSR797POI Signal bigWig Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K27ac signal 2 5247 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/30/e71d66e6-e747-4707-b2be-22b04218f33d/ENCFF616UIE.bigWig\ color 181,145,0\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell male adult 33 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR797POI Signal\ track wgEncodeReg4Epigenetics_ENCFF616UIE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF631BWF ENCSR798NVH Peak bigBed 5 Uterus tissue female adult 51 years CTCF peak 4 5248 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/59335270-5512-4075-b8d1-71e49d41070a/ENCFF631BWF.bigBed\ color 0,176,240\ labelFields none\ longLabel Uterus tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR798NVH Peak\ track wgEncodeReg4Epigenetics_ENCFF631BWF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF245FMZ ENCSR798NVH Signal bigWig Uterus tissue female adult 51 years CTCF signal 2 5249 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/8b083454-ee32-410c-bb65-443c8a36a1f4/ENCFF245FMZ.bigWig\ color 0,176,240\ longLabel Uterus tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR798NVH Signal\ track wgEncodeReg4Epigenetics_ENCFF245FMZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF289WUU ENCSR798RTU Peak bigBed 5 Caudate nucleus tissue female adult 75 years H3K27ac peak 4 5250 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/1f677ede-67a4-4181-9b41-22f68d71365c/ENCFF289WUU.bigBed\ color 181,145,0\ longLabel Caudate nucleus tissue female adult 75 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR798RTU Peak\ track wgEncodeReg4Epigenetics_ENCFF289WUU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF273JQE ENCSR798RTU Signal bigWig Caudate nucleus tissue female adult 75 years H3K27ac signal 2 5251 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/104eb0ff-f802-484f-9fdd-fc3fd70f0b4d/ENCFF273JQE.bigWig\ color 181,145,0\ longLabel Caudate nucleus tissue female adult 75 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR798RTU Signal\ track wgEncodeReg4Epigenetics_ENCFF273JQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF928EFO ENCSR798XLO Peak bigBed 5 Ovary tissue female adult 46 years DNase peak 4 5252 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/cab5dc46-ebb8-4e8d-87e7-92a99cd54a75/ENCFF928EFO.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 46 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR798XLO Peak\ track wgEncodeReg4Epigenetics_ENCFF928EFO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF971KWT ENCSR798XLO Signal bigWig Ovary tissue female adult 46 years DNase signal 2 5253 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/bb88b69e-7635-4672-9a5d-1b18dcec77ea/ENCFF971KWT.bigWig\ color 6,218,147\ longLabel Ovary tissue female adult 46 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR798XLO Signal\ track wgEncodeReg4Epigenetics_ENCFF971KWT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF455DMI ENCSR799GJD Peak bigBed 5 Nephron progenitor cell, 8 days post differentiation CTCF peak 4 5254 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/7b903476-eda0-4a81-b720-7e27b7309490/ENCFF455DMI.bigBed\ color 0,176,240\ labelFields none\ longLabel Nephron progenitor cell, 8 days post differentiation CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799GJD Peak\ track wgEncodeReg4Epigenetics_ENCFF455DMI\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF041NZX ENCSR799GJD Signal bigWig Nephron progenitor cell, 8 days post differentiation CTCF signal 2 5255 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/98edd70b-0678-4779-ad60-c48b47931b91/ENCFF041NZX.bigWig\ color 0,176,240\ longLabel Nephron progenitor cell, 8 days post differentiation CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799GJD Signal\ track wgEncodeReg4Epigenetics_ENCFF041NZX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF562ZLA ENCSR799GSS Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 DNase peak 4 5256 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/21/81aca121-b438-42b0-8473-58175556e8c5/ENCFF562ZLA.bigBed\ color 6,218,147\ labelFields none\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799GSS Peak\ track wgEncodeReg4Epigenetics_ENCFF562ZLA\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF635GBA ENCSR799GSS Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 DNase signal 2 5257 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/21/1ad51033-7d8e-4c21-a08a-7e61fe5852f0/ENCFF635GBA.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799GSS Signal\ track wgEncodeReg4Epigenetics_ENCFF635GBA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF724VRN ENCSR799MAX Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase peak 4 5258 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/d5b2c1cf-2695-4e64-94db-467bcf4a11c7/ENCFF724VRN.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799MAX Peak\ track wgEncodeReg4Epigenetics_ENCFF724VRN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF603TWW ENCSR799MAX Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase signal 2 5259 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/289d15ec-afc7-4938-bfa3-5e996bafe139/ENCFF603TWW.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799MAX Signal\ track wgEncodeReg4Epigenetics_ENCFF603TWW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF989CMY ENCSR799SRL Peak bigBed 5 Neuronal stem cell originated from H1 H3K27ac peak 4 5260 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/72648cc7-e113-47b6-8378-bcccacd0197e/ENCFF989CMY.bigBed\ color 181,145,0\ longLabel Neuronal stem cell originated from H1 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799SRL Peak\ track wgEncodeReg4Epigenetics_ENCFF989CMY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF110SOE ENCSR799SRL Signal bigWig Neuronal stem cell originated from H1 H3K27ac signal 2 5261 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/28aa09d3-e7c0-4935-b3ac-4b574f687670/ENCFF110SOE.bigWig\ color 181,145,0\ longLabel Neuronal stem cell originated from H1 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799SRL Signal\ track wgEncodeReg4Epigenetics_ENCFF110SOE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF108BCY ENCSR799TJD Peak bigBed 5 Upper lobe of left lung tissue female adult 51 years CTCF peak 4 5262 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/891a9b19-cb0f-4069-b01e-028529dea0e7/ENCFF108BCY.bigBed\ color 0,176,240\ labelFields none\ longLabel Upper lobe of left lung tissue female adult 51 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799TJD Peak\ track wgEncodeReg4Epigenetics_ENCFF108BCY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF468WUY ENCSR799TJD Signal bigWig Upper lobe of left lung tissue female adult 51 years CTCF signal 2 5263 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/44e6c71a-fa40-40e4-9427-b9eb132cc1a3/ENCFF468WUY.bigWig\ color 0,176,240\ longLabel Upper lobe of left lung tissue female adult 51 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799TJD Signal\ track wgEncodeReg4Epigenetics_ENCFF468WUY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF505BQS ENCSR799TMR Peak bigBed 5 Duodenal mucosa tissue male adult 59 years H3K4me3 peak 4 5264 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/7e2016ce-8185-4a1f-98ba-e700af6e4784/ENCFF505BQS.bigBed\ color 255,0,0\ longLabel Duodenal mucosa tissue male adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799TMR Peak\ track wgEncodeReg4Epigenetics_ENCFF505BQS\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF759WSX ENCSR799TMR Signal bigWig Duodenal mucosa tissue male adult 59 years H3K4me3 signal 2 5265 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/a891033a-45da-455d-bf04-bc082dfc8aba/ENCFF759WSX.bigWig\ color 255,0,0\ longLabel Duodenal mucosa tissue male adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799TMR Signal\ track wgEncodeReg4Epigenetics_ENCFF759WSX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF828IDE ENCSR799WDT Peak bigBed 5 Peyer's patch tissue male adult 54 years CTCF peak 4 5266 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/3ffbbc0b-87b3-4ab5-9942-bdec290bf13f/ENCFF828IDE.bigBed\ color 0,176,240\ labelFields none\ longLabel Peyer's patch tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799WDT Peak\ track wgEncodeReg4Epigenetics_ENCFF828IDE\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF694HBV ENCSR799WDT Signal bigWig Peyer's patch tissue male adult 54 years CTCF signal 2 5267 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/13/a7d7d402-3dc1-4231-b3ac-98914b07e7e7/ENCFF694HBV.bigWig\ color 0,176,240\ longLabel Peyer's patch tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR799WDT Signal\ track wgEncodeReg4Epigenetics_ENCFF694HBV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF393MLF ENCSR800ADR Peak bigBed 5 Upper lobe of left lung tissue female adult 61 years DNase peak 4 5268 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/f2db40b6-4c65-4f30-90a4-0434497c862b/ENCFF393MLF.bigBed\ color 6,218,147\ labelFields none\ longLabel Upper lobe of left lung tissue female adult 61 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800ADR Peak\ track wgEncodeReg4Epigenetics_ENCFF393MLF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF918MVE ENCSR800ADR Signal bigWig Upper lobe of left lung tissue female adult 61 years DNase signal 2 5269 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/62ad9f1a-e8da-462a-baf1-d6b5d623e4b3/ENCFF918MVE.bigWig\ color 6,218,147\ longLabel Upper lobe of left lung tissue female adult 61 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800ADR Signal\ track wgEncodeReg4Epigenetics_ENCFF918MVE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF853SQQ ENCSR800KVI Peak bigBed 5 Middle frontal area 46 tissue female adult 84 years DNase peak 4 5270 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/0bc327de-9fa8-4a50-91f5-bb3d72ef429b/ENCFF853SQQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 84 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800KVI Peak\ track wgEncodeReg4Epigenetics_ENCFF853SQQ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF018BZK ENCSR800KVI Signal bigWig Middle frontal area 46 tissue female adult 84 years DNase signal 2 5271 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a73c86aa-f486-4022-9398-653821a84c00/ENCFF018BZK.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 84 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800KVI Signal\ track wgEncodeReg4Epigenetics_ENCFF018BZK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF888LCU ENCSR800MBE Peak bigBed 5 Middle frontal area 46 tissue female adult 82 years DNase peak 4 5272 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/0951bb3f-f39a-48fe-9927-029ff436887c/ENCFF888LCU.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 82 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800MBE Peak\ track wgEncodeReg4Epigenetics_ENCFF888LCU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF427FGG ENCSR800MBE Signal bigWig Middle frontal area 46 tissue female adult 82 years DNase signal 2 5273 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/9f25d888-36d2-4bf9-afd3-6f1ea67f8e58/ENCFF427FGG.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue female adult 82 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800MBE Signal\ track wgEncodeReg4Epigenetics_ENCFF427FGG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF098KUD ENCSR800QGE Peak bigBed 5 Large intestine tissue female embryo 103 days DNase peak 4 5274 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/a9d02a69-ffdc-4f32-85b2-765d3b0eceda/ENCFF098KUD.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 103 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800QGE Peak\ track wgEncodeReg4Epigenetics_ENCFF098KUD\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF766GDO ENCSR800QGE Signal bigWig Large intestine tissue female embryo 103 days DNase signal 2 5275 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/3e4329a6-b9b3-4f54-965d-845f3c773674/ENCFF766GDO.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 103 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800QGE Signal\ track wgEncodeReg4Epigenetics_ENCFF766GDO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF351EZT ENCSR800RAH Peak bigBed 5 K562 treated with 1 μM Methotrexate for 24 hours ATAC peak 4 5276 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/9b6f8e78-215e-4dc2-a43e-f274a49b596d/ENCFF351EZT.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM Methotrexate for 24 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800RAH Peak\ track wgEncodeReg4Epigenetics_ENCFF351EZT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF487NMR ENCSR800RAH Signal bigWig K562 treated with 1 μM Methotrexate for 24 hours ATAC signal 2 5277 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/24bbdc3e-b978-4088-a203-402bdf74c682/ENCFF487NMR.bigWig\ color 2,199,185\ longLabel K562 treated with 1 μM Methotrexate for 24 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR800RAH Signal\ track wgEncodeReg4Epigenetics_ENCFF487NMR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF565XQZ ENCSR801IPH Peak bigBed 5 Gastrocnemius medialis tissue male adult 37 years H3K27ac peak 4 5278 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/1fdb52ca-1e91-4459-aba7-0f1b47c5296e/ENCFF565XQZ.bigBed\ color 181,145,0\ longLabel Gastrocnemius medialis tissue male adult 37 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR801IPH Peak\ track wgEncodeReg4Epigenetics_ENCFF565XQZ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF793HOY ENCSR801IPH Signal bigWig Gastrocnemius medialis tissue male adult 37 years H3K27ac signal 2 5279 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/29e8f52d-d6c1-4ab3-b3c9-1095da159cd3/ENCFF793HOY.bigWig\ color 181,145,0\ longLabel Gastrocnemius medialis tissue male adult 37 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR801IPH Signal\ track wgEncodeReg4Epigenetics_ENCFF793HOY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF047OUA ENCSR801VSK Peak bigBed 5 Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak 4 5280 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/81e48eb5-2e23-4a5c-8368-82452b889dab/ENCFF047OUA.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR801VSK Peak\ track wgEncodeReg4Epigenetics_ENCFF047OUA\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF240PRJ ENCSR801VSK Signal bigWig Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal 2 5281 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/f586c79b-0b16-4d22-bbae-35ac85fd41c1/ENCFF240PRJ.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell female adult 37 years treated with Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR801VSK Signal\ track wgEncodeReg4Epigenetics_ENCFF240PRJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF580DAG ENCSR802AJE Peak bigBed 5 Placenta tissue male embryo 85 days DNase peak 4 5282 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/10/14a3b32d-014c-420f-9776-c8deace91249/ENCFF580DAG.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo 85 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802AJE Peak\ track wgEncodeReg4Epigenetics_ENCFF580DAG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF575CKN ENCSR802AJE Signal bigWig Placenta tissue male embryo 85 days DNase signal 2 5283 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/10/8c78121a-5934-4af4-b9a7-80fee2330f90/ENCFF575CKN.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo 85 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802AJE Signal\ track wgEncodeReg4Epigenetics_ENCFF575CKN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF478LVH ENCSR802GEV Peak bigBed 5 Cerebellum tissue male adult 20 years ATAC peak 4 5284 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/12/080564c4-cbdd-4450-8946-8407c4d11a6e/ENCFF478LVH.bigBed\ color 2,199,185\ longLabel Cerebellum tissue male adult 20 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802GEV Peak\ track wgEncodeReg4Epigenetics_ENCFF478LVH\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF847DVN ENCSR802GEV Signal bigWig Cerebellum tissue male adult 20 years ATAC signal 2 5285 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/12/e30e3f49-4aff-4a08-9036-cbbd1dda7160/ENCFF847DVN.bigWig\ color 2,199,185\ longLabel Cerebellum tissue male adult 20 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802GEV Signal\ track wgEncodeReg4Epigenetics_ENCFF847DVN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF529HBS ENCSR802MXQ Peak bigBed 5 Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 peak 4 5286 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/edcf74e3-ec6c-4dee-ae6c-1a4977c3eedf/ENCFF529HBS.bigBed\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802MXQ Peak\ track wgEncodeReg4Epigenetics_ENCFF529HBS\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF856USO ENCSR802MXQ Signal bigWig Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 signal 2 5287 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/944434ea-68bf-4056-8cdb-151802ad75ec/ENCFF856USO.bigWig\ color 255,0,0\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802MXQ Signal\ track wgEncodeReg4Epigenetics_ENCFF856USO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF027RPR ENCSR802NBC Peak bigBed 5 Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 5288 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/9beac5fe-07e3-459d-b8ea-f6aaa29d6eb7/ENCFF027RPR.bigBed\ color 6,218,147\ labelFields none\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802NBC Peak\ track wgEncodeReg4Epigenetics_ENCFF027RPR\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF973NVP ENCSR802NBC Signal bigWig Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 5289 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/15/f72b31f7-d653-4fdf-8a0a-c674c949fb92/ENCFF973NVP.bigWig\ color 6,218,147\ longLabel Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR802NBC Signal\ track wgEncodeReg4Epigenetics_ENCFF973NVP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF312BAC ENCSR802ZYE Peak bigBed 5 Left lobe of liver tissue male adult 45 years DNase peak 4 5290 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/8b993625-e241-4d24-8681-24a02f4d7f57/ENCFF312BAC.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lobe of liver tissue male adult 45 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR811OUF Peak\ track wgEncodeReg4Epigenetics_ENCFF204NSQ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF769AFQ ENCSR811OUF Signal bigWig Middle frontal area 46 tissue male adult 86 years DNase signal 2 5337 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/741001cf-5520-4e73-9e93-8f4283e26749/ENCFF769AFQ.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue male adult 86 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR811OUF Signal\ track wgEncodeReg4Epigenetics_ENCFF769AFQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF910BLL ENCSR812IND Peak bigBed 5 B cell male adult 22 years H3K4me3 peak 4 5338 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/0b3cb0e9-cd04-4325-af60-4e3c79618c85/ENCFF910BLL.bigBed\ color 255,0,0\ longLabel B cell male adult 22 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR812IND Peak\ track wgEncodeReg4Epigenetics_ENCFF910BLL\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF061VAL ENCSR812IND Signal bigWig B cell male adult 22 years H3K4me3 signal 2 5339 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/4294f054-789e-4ef9-bed4-069290e66e29/ENCFF061VAL.bigWig\ color 255,0,0\ longLabel B cell male adult 22 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR812IND Signal\ track wgEncodeReg4Epigenetics_ENCFF061VAL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF521EBT ENCSR812ZKP Peak bigBed 5 From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak 4 5340 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/2c7b335e-cfc4-480d-aa31-545555905e24/ENCFF521EBT.bigBed\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR812ZKP Peak\ track wgEncodeReg4Epigenetics_ENCFF521EBT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF657SKW ENCSR812ZKP Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 5341 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/88f14590-3d31-43b3-8564-a3bb6547bf96/ENCFF657SKW.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR812ZKP Signal\ track wgEncodeReg4Epigenetics_ENCFF657SKW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF232HSN ENCSR813CFB Peak bigBed 5 Foreskin fibroblast male newborn H3K4me3 peak 4 5342 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/a96088d8-d281-4dd1-bcfa-fd7f3891fbd2/ENCFF232HSN.bigBed\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813CFB Peak\ track wgEncodeReg4Epigenetics_ENCFF232HSN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF123FVI ENCSR813CFB Signal bigWig Foreskin fibroblast male newborn H3K4me3 signal 2 5343 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/cabe58fa-1e5a-4d05-9141-ef4d2aef5e47/ENCFF123FVI.bigWig\ color 255,0,0\ longLabel Foreskin fibroblast male newborn H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813CFB Signal\ track wgEncodeReg4Epigenetics_ENCFF123FVI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF352XLM ENCSR813CKU Peak bigBed 5 Urinary bladder tissue male embryo 76 days DNase peak 4 5344 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/c2258b13-d691-46ae-938f-980488b6991e/ENCFF352XLM.bigBed\ color 6,218,147\ labelFields none\ longLabel Urinary bladder tissue male embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813CKU Peak\ track wgEncodeReg4Epigenetics_ENCFF352XLM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF284ARV ENCSR813CKU Signal bigWig Urinary bladder tissue male embryo 76 days DNase signal 2 5345 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/dce2bda9-a5c8-4cfd-a898-4a550141fab7/ENCFF284ARV.bigWig\ color 6,218,147\ longLabel Urinary bladder tissue male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813CKU Signal\ track wgEncodeReg4Epigenetics_ENCFF284ARV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF149PUN ENCSR813KUE Peak bigBed 5 Middle frontal area 46 tissue male adult 78 years CTCF peak 4 5346 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/74d2b07d-066c-438c-9ec8-34a280cda024/ENCFF149PUN.bigBed\ color 0,176,240\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 78 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813KUE Peak\ track wgEncodeReg4Epigenetics_ENCFF149PUN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF693AEK ENCSR813KUE Signal bigWig Middle frontal area 46 tissue male adult 78 years CTCF signal 2 5347 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/98a594cd-32ce-49a5-903e-fe66c61fe83b/ENCFF693AEK.bigWig\ color 0,176,240\ longLabel Middle frontal area 46 tissue male adult 78 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813KUE Signal\ track wgEncodeReg4Epigenetics_ENCFF693AEK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF009JUX ENCSR813ZEY Peak bigBed 5 Transverse colon tissue male adult 37 years H3K4me3 peak 4 5348 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/e9368c41-8f69-4aa5-8779-ba15b2c899ec/ENCFF009JUX.bigBed\ color 255,0,0\ longLabel Transverse colon tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813ZEY Peak\ track wgEncodeReg4Epigenetics_ENCFF009JUX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF252OBP ENCSR813ZEY Signal bigWig Transverse colon tissue male adult 37 years H3K4me3 signal 2 5349 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/51ff6822-79cc-4bea-8504-afc19baa74f5/ENCFF252OBP.bigWig\ color 255,0,0\ longLabel Transverse colon tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR813ZEY Signal\ track wgEncodeReg4Epigenetics_ENCFF252OBP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF474OUB ENCSR814DYF Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue male adult 90 or above years DNase peak 4 5350 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/7aa39191-dc38-491b-a518-95a8e7bc2e88/ENCFF474OUB.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue male adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814DYF Peak\ track wgEncodeReg4Epigenetics_ENCFF474OUB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF410TMZ ENCSR814DYF Signal bigWig Mild cognitive impairment head of caudate nucleus tissue male adult 90 or above years DNase signal 2 5351 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/ef361082-b56e-4a6d-a74e-b8bafb0a5367/ENCFF410TMZ.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue male adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814DYF Signal\ track wgEncodeReg4Epigenetics_ENCFF410TMZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF311XQM ENCSR814KRX Peak bigBed 5 HT-29 DNase peak 4 5352 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/df635b2b-06e8-432a-b786-8beecabb9f36/ENCFF311XQM.bigBed\ color 6,218,147\ labelFields none\ longLabel HT-29 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814KRX Peak\ track wgEncodeReg4Epigenetics_ENCFF311XQM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF151RWB ENCSR814KRX Signal bigWig HT-29 DNase signal 2 5353 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/4c95a32b-39cb-4dd4-b556-878fc8129662/ENCFF151RWB.bigWig\ color 6,218,147\ longLabel HT-29 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814KRX Signal\ track wgEncodeReg4Epigenetics_ENCFF151RWB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF407LFW ENCSR814KSK Peak bigBed 5 Middle frontal area 46 tissue male adult 82 years H3K27ac peak 4 5354 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/818c784b-26a1-476b-bd53-b3e3c8d5ffc3/ENCFF407LFW.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 82 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814KSK Peak\ track wgEncodeReg4Epigenetics_ENCFF407LFW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF272DJL ENCSR814KSK Signal bigWig Middle frontal area 46 tissue male adult 82 years H3K27ac signal 2 5355 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/3984900b-0ba0-4ca2-9f0c-9b2771a85907/ENCFF272DJL.bigWig\ color 181,145,0\ longLabel Middle frontal area 46 tissue male adult 82 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814KSK Signal\ track wgEncodeReg4Epigenetics_ENCFF272DJL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF991DOM ENCSR814XPE Peak bigBed 5 H1 H3K4me3 peak 4 5356 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/e43ff5e4-4ca9-4bf8-89e9-30785c7c632b/ENCFF991DOM.bigBed\ color 255,0,0\ longLabel H1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814XPE Peak\ track wgEncodeReg4Epigenetics_ENCFF991DOM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF760NUN ENCSR814XPE Signal bigWig H1 H3K4me3 signal 2 5357 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/01/f2a3925c-104f-4215-a740-b41a3f7d3a3b/ENCFF760NUN.bigWig\ color 255,0,0\ longLabel H1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR814XPE Signal\ track wgEncodeReg4Epigenetics_ENCFF760NUN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF066YHJ ENCSR815DWW Peak bigBed 5 T-cell male adult 19 years DNase peak 4 5358 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/89e34e81-270c-4351-bb85-217af6f684ec/ENCFF066YHJ.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 19 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR815DWW Peak\ track wgEncodeReg4Epigenetics_ENCFF066YHJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF009GSJ ENCSR815DWW Signal bigWig T-cell male adult 19 years DNase signal 2 5359 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/6d89535f-f9a3-47bd-9b84-b1f3665b764d/ENCFF009GSJ.bigWig\ color 6,218,147\ longLabel T-cell male adult 19 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR815DWW Signal\ track wgEncodeReg4Epigenetics_ENCFF009GSJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF257EVE ENCSR816PPJ Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak 4 5360 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/88c73175-aeb7-4589-bd16-b6432acf5ee3/ENCFF257EVE.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR828RNY Peak\ track wgEncodeReg4Epigenetics_ENCFF323GRI\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF184QIG ENCSR828RNY Signal bigWig Renal cortex interstitium tissue male embryo 108 days DNase signal 2 5418 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/bc19586c-c901-436e-8190-9ca7f448a354/ENCFF184QIG.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue male embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR828RNY Signal\ track wgEncodeReg4Epigenetics_ENCFF184QIG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF655GBO ENCSR829HTO Peak bigBed 5 Prostate gland tissue male adult 54 years CTCF peak 4 5419 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/54727039-af6d-4116-a8eb-ebb631588e37/ENCFF655GBO.bigBed\ color 0,176,240\ labelFields none\ longLabel Prostate gland tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR829HTO Peak\ track wgEncodeReg4Epigenetics_ENCFF655GBO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF308OYN ENCSR829HTO Signal bigWig Prostate gland tissue male adult 54 years CTCF signal 2 5420 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/4d285e21-44d8-487b-9dcf-83afe817889c/ENCFF308OYN.bigWig\ color 0,176,240\ longLabel Prostate gland tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR829HTO Signal\ track wgEncodeReg4Epigenetics_ENCFF308OYN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF836HHN ENCSR829MXU Peak bigBed 5 Pons tissue male adult 78 years DNase peak 4 5421 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/bcdedfd6-3b9e-4030-ac03-d29f2d7a5267/ENCFF836HHN.bigBed\ color 6,218,147\ labelFields none\ longLabel Pons tissue male adult 78 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR829MXU Peak\ track wgEncodeReg4Epigenetics_ENCFF836HHN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF722YGX ENCSR829MXU Signal bigWig Pons tissue male adult 78 years DNase signal 2 5422 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/6355bf28-eaef-4017-9502-7ffd1b23ffb9/ENCFF722YGX.bigWig\ color 6,218,147\ longLabel Pons tissue male adult 78 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR829MXU Signal\ track wgEncodeReg4Epigenetics_ENCFF722YGX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF815VYP ENCSR830ALP Peak bigBed 5 Activated T-cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak 4 5423 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/16bb5998-4d0a-446e-b17e-e40562df9c9b/ENCFF815VYP.bigBed\ color 2,199,185\ longLabel Activated T-cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR830ALP Peak\ track wgEncodeReg4Epigenetics_ENCFF815VYP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF061KDF ENCSR830ALP Signal bigWig Activated T-cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal 2 5424 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/08/c7304722-eb63-4588-961f-105533af1006/ENCFF061KDF.bigWig\ color 2,199,185\ longLabel Activated T-cell male adult 43 years treated with anti-CD3 and anti-CD28 coated beads for 72 hours, 50 U/mL Interleukin-2 for 72 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR830ALP Signal\ track wgEncodeReg4Epigenetics_ENCFF061KDF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF948LWW ENCSR830EXC Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 74 years H3K27ac peak 4 5425 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/6551176f-de89-4209-b7eb-e24d61ffb9d3/ENCFF948LWW.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 74 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR830EXC Peak\ track wgEncodeReg4Epigenetics_ENCFF948LWW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF472UDH ENCSR830EXC Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 74 years H3K27ac signal 2 5426 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/ca3f7d57-1593-424c-b48a-4c6f5391d6d7/ENCFF472UDH.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 74 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR830EXC Signal\ track wgEncodeReg4Epigenetics_ENCFF472UDH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF376RUJ ENCSR830YQW Peak bigBed 5 CD4-positive, alpha-beta memory T cell H3K27ac peak 4 5427 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/7fc05784-dd74-42b7-bff6-5b7e576754fc/ENCFF376RUJ.bigBed\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR830YQW Peak\ track wgEncodeReg4Epigenetics_ENCFF376RUJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF435QDZ ENCSR830YQW Signal bigWig CD4-positive, alpha-beta memory T cell H3K27ac signal 2 5428 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/5267c185-d517-4ad1-abd8-94b28ceca429/ENCFF435QDZ.bigWig\ color 181,145,0\ longLabel CD4-positive, alpha-beta memory T cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR830YQW Signal\ track wgEncodeReg4Epigenetics_ENCFF435QDZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF024PBT ENCSR831KAH Peak bigBed 5 Tibial nerve tissue female adult 51 years ATAC peak 4 5429 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/021114f0-12aa-4a0b-bec6-ed4c36204b80/ENCFF024PBT.bigBed\ color 2,199,185\ longLabel Tibial nerve tissue female adult 51 years ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR835WBW Peak\ track wgEncodeReg4Epigenetics_ENCFF837VTX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF245DIM ENCSR835WBW Signal bigWig HG03565 ATAC signal 2 5456 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/26/ae223438-a210-4456-8dd7-3d7e1e00e48b/ENCFF245DIM.bigWig\ color 2,199,185\ longLabel HG03565 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR835WBW Signal\ track wgEncodeReg4Epigenetics_ENCFF245DIM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF508MDQ ENCSR835YED Peak bigBed 5 Skin epidermis tissue male adult 77 years H3K4me3 peak 4 5457 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/6ee2d92d-2012-495c-b17a-6806c12dcf15/ENCFF508MDQ.bigBed\ color 255,0,0\ longLabel Skin epidermis tissue male adult 77 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR836FIL Peak\ track wgEncodeReg4Epigenetics_ENCFF394CHS\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF241ZLC ENCSR836FIL Signal bigWig Right lobe of liver tissue male adult 40 years ATAC signal 2 5460 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/7650e8b2-2aa1-40bc-865f-f9849f3b276d/ENCFF241ZLC.bigWig\ color 2,199,185\ longLabel Right lobe of liver tissue male adult 40 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR836FIL Signal\ track wgEncodeReg4Epigenetics_ENCFF241ZLC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF102TOO ENCSR837CSL Peak bigBed 5 Adrenal gland tissue female adult 41 years H3K27ac peak 4 5461 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/d1bcfbe7-951c-4bbc-817f-d46f29d21618/ENCFF102TOO.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue female adult 41 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR837SGJ Peak\ track wgEncodeReg4Epigenetics_ENCFF427JMD\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF302XLU ENCSR837SGJ Signal bigWig Peyer's patch tissue female adult 53 years H3K27ac signal 2 5464 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/75d1b8a3-f0ad-4ad3-9844-efbf44beac90/ENCFF302XLU.bigWig\ color 181,145,0\ longLabel Peyer's patch tissue female adult 53 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR837SGJ Signal\ track wgEncodeReg4Epigenetics_ENCFF302XLU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF161JSE ENCSR837ZSS Peak bigBed 5 T-cell female adult 19 years DNase peak 4 5465 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/0a5c6c5d-63d1-495c-8732-173a343fcc37/ENCFF161JSE.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell female adult 19 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR841UCZ Peak\ track wgEncodeReg4Epigenetics_ENCFF661KQX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF495OBX ENCSR841UCZ Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase signal 2 5494 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/29c19441-a037-4ff4-a04c-6332adcc9bc1/ENCFF495OBX.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR841UCZ Signal\ track wgEncodeReg4Epigenetics_ENCFF495OBX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF793YFI ENCSR842KCP Peak bigBed 5 Cardiac muscle cell originated from RUES2 DNase peak 4 5495 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/83e08c5d-0756-4d6c-8600-76c8cd34748c/ENCFF793YFI.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiac muscle cell originated from RUES2 DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR846VGZ Peak\ track wgEncodeReg4Epigenetics_ENCFF183VPL\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF293YDF ENCSR846VGZ Signal bigWig Posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 5516 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/6efee22b-9f7d-46cb-a986-723d1b3132f5/ENCFF293YDF.bigWig\ color 6,218,147\ longLabel Posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR846VGZ Signal\ track wgEncodeReg4Epigenetics_ENCFF293YDF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF951OFF ENCSR846VLJ Peak bigBed 5 Sigmoid colon tissue female adult 53 years ATAC peak 4 5517 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/35480208-a662-4a78-94b1-2d0dbe609c2d/ENCFF951OFF.bigBed\ color 2,199,185\ longLabel Sigmoid colon tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR846VLJ Peak\ track wgEncodeReg4Epigenetics_ENCFF951OFF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF784HME ENCSR846VLJ Signal bigWig Sigmoid colon tissue female adult 53 years ATAC signal 2 5518 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/32b169d4-ddb8-458c-901a-252fde91ad6f/ENCFF784HME.bigWig\ color 2,199,185\ longLabel Sigmoid colon tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR846VLJ Signal\ track wgEncodeReg4Epigenetics_ENCFF784HME\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF150PRS ENCSR846VPV Peak bigBed 5 Heart left ventricle tissue female adult 66 years ATAC peak 4 5519 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/826ad1ae-abc6-41f7-8501-4f516bbff96f/ENCFF150PRS.bigBed\ color 2,199,185\ longLabel Heart left ventricle tissue female adult 66 years ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR846ZBX Peak\ track wgEncodeReg4Epigenetics_ENCFF603MOP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF325WVA ENCSR846ZBX Signal bigWig Breast epithelium tissue female adult 51 years ATAC signal 2 5522 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/c69b79ab-4347-4235-874e-031f286c8c2c/ENCFF325WVA.bigWig\ color 2,199,185\ longLabel Breast epithelium tissue female adult 51 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR846ZBX Signal\ track wgEncodeReg4Epigenetics_ENCFF325WVA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF395ZME ENCSR847AIA Peak bigBed 5 Adrenal gland tissue male embryo 97 days H3K27ac peak 4 5523 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/f026df9b-5200-4715-b18d-a8d0411d6d01/ENCFF395ZME.bigBed\ color 181,145,0\ longLabel Adrenal gland tissue male embryo 97 days H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847AIA Peak\ track wgEncodeReg4Epigenetics_ENCFF395ZME\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF735UKH ENCSR847AIA Signal bigWig Adrenal gland tissue male embryo 97 days H3K27ac signal 2 5524 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/3f9e44f7-da2c-49b2-b665-4a54522bffa5/ENCFF735UKH.bigWig\ color 181,145,0\ longLabel Adrenal gland tissue male embryo 97 days H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847AIA Signal\ track wgEncodeReg4Epigenetics_ENCFF735UKH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF812HQJ ENCSR847OSL Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak 4 5525 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/7c1bd867-427e-4e0e-8aa0-dcd18e5323f5/ENCFF812HQJ.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847OSL Peak\ track wgEncodeReg4Epigenetics_ENCFF812HQJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF374AEG ENCSR847OSL Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal 2 5526 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/bedefd01-580c-418f-aafb-6e2c3ff688ed/ENCFF374AEG.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847OSL Signal\ track wgEncodeReg4Epigenetics_ENCFF374AEG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF409BEB ENCSR847RSJ Peak bigBed 5 Lung tissue female embryo 96 days DNase peak 4 5527 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/68aead34-28cf-452e-959a-2a179c46ec7e/ENCFF409BEB.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue female embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847RSJ Peak\ track wgEncodeReg4Epigenetics_ENCFF409BEB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF743VYP ENCSR847RSJ Signal bigWig Lung tissue female embryo 96 days DNase signal 2 5528 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/e75a60ad-7f54-4845-8975-dd27129d8424/ENCFF743VYP.bigWig\ color 6,218,147\ longLabel Lung tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847RSJ Signal\ track wgEncodeReg4Epigenetics_ENCFF743VYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF679QSU ENCSR847XGE Peak bigBed 5 22Rv1 treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF peak 4 5529 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/6665481e-ffdb-4e79-90f2-4fad5d46a4e2/ENCFF679QSU.bigBed\ color 0,176,240\ labelFields none\ longLabel 22Rv1 treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847XGE Peak\ track wgEncodeReg4Epigenetics_ENCFF679QSU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF167XIB ENCSR847XGE Signal bigWig 22Rv1 treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF signal 2 5530 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/e1393911-5493-4d7a-803b-eade5d05d930/ENCFF167XIB.bigWig\ color 0,176,240\ longLabel 22Rv1 treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR847XGE Signal\ track wgEncodeReg4Epigenetics_ENCFF167XIB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF614PHX ENCSR848XJL Peak bigBed 5 Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak 4 5531 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/0f006efb-e380-48c2-8d77-d36e0b26464e/ENCFF614PHX.bigBed\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR848XJL Peak\ track wgEncodeReg4Epigenetics_ENCFF614PHX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF817YEB ENCSR848XJL Signal bigWig Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal 2 5532 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/83f4e97e-d147-4606-89b3-50c38707a49d/ENCFF817YEB.bigWig\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD8-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR848XJL Signal\ track wgEncodeReg4Epigenetics_ENCFF817YEB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF664SDG ENCSR849CYU Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 5533 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/32dc6a1b-56e2-44de-bf06-ecb743616995/ENCFF664SDG.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR855FOP Peak\ track wgEncodeReg4Epigenetics_ENCFF457NUS\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF271NTU ENCSR855FOP Signal bigWig Hematopoietic multipotent progenitor cell treated with interleukin-3 for 13 days, kit ligand for 13 days, hydrocortisone succinate for 13 days, erythropoietin for 13 days DNase signal 2 5560 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/c9a9609c-56f1-4d36-ac26-7f37c60fe68a/ENCFF271NTU.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 13 days, kit ligand for 13 days, hydrocortisone succinate for 13 days, erythropoietin for 13 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR855FOP Signal\ track wgEncodeReg4Epigenetics_ENCFF271NTU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF208ROD ENCSR855NCG Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 83 years H3K27ac peak 4 5561 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/c11d5531-f37e-4555-9136-7087ea1f4b7c/ENCFF208ROD.bigBed\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 83 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR855NCG Peak\ track wgEncodeReg4Epigenetics_ENCFF208ROD\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF820MMW ENCSR855NCG Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 83 years H3K27ac signal 2 5562 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/94e0240a-3cfe-488d-a267-f817630110a2/ENCFF820MMW.bigWig\ color 181,145,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 83 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR855NCG Signal\ track wgEncodeReg4Epigenetics_ENCFF820MMW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF680JIN ENCSR855OKE Peak bigBed 5 Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac peak 4 5563 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/a6f6ab8f-c121-4c2e-9083-307651504388/ENCFF680JIN.bigBed\ color 181,145,0\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR855OKE Peak\ track wgEncodeReg4Epigenetics_ENCFF680JIN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF766FGE ENCSR855OKE Signal bigWig Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac signal 2 5564 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/4ec0323c-a7f6-452b-8c3e-67c28474c943/ENCFF766FGE.bigWig\ color 181,145,0\ longLabel Activated naive CD4-positive, alpha-beta T cell male adult 50 years treated with 50 U/mL Interleukin-2 for 72 hours, anti-CD3 and anti-CD28 coated beads for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR855OKE Signal\ track wgEncodeReg4Epigenetics_ENCFF766FGE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF911IEE ENCSR856JJB Peak bigBed 5 RWPE2 CTCF peak 4 5565 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/46256039-99e3-4032-8840-4ac54da35194/ENCFF911IEE.bigBed\ color 0,176,240\ labelFields none\ longLabel RWPE2 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR856JJB Peak\ track wgEncodeReg4Epigenetics_ENCFF911IEE\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF508ALM ENCSR856JJB Signal bigWig RWPE2 CTCF signal 2 5566 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/04bc7f55-b919-4f7e-84af-aefb48ad5659/ENCFF508ALM.bigWig\ color 0,176,240\ longLabel RWPE2 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR856JJB Signal\ track wgEncodeReg4Epigenetics_ENCFF508ALM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF308UZN ENCSR856NXV Peak bigBed 5 Cardiac fibroblast female embryo 94 days and female embryo 98 days DNase peak 4 5567 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/e1a0ff39-230e-4015-9a97-541473030d01/ENCFF308UZN.bigBed\ color 6,218,147\ labelFields none\ longLabel Cardiac fibroblast female embryo 94 days and female embryo 98 days DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR857PBV Peak\ track wgEncodeReg4Epigenetics_ENCFF466OXN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF101XPW ENCSR857PBV Signal bigWig 22Rv1 CTCF signal 2 5584 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/acee22cc-d2fb-4a7f-8028-54649833a984/ENCFF101XPW.bigWig\ color 0,176,240\ longLabel 22Rv1 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR857PBV Signal\ track wgEncodeReg4Epigenetics_ENCFF101XPW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF397ZZF ENCSR857RJQ Peak bigBed 5 Sigmoid colon tissue male adult 54 years CTCF peak 4 5585 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/23/b90f8916-d8fd-4dcc-90e7-07c92345b5bd/ENCFF397ZZF.bigBed\ color 0,176,240\ labelFields none\ longLabel Sigmoid colon tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR858GTE Peak\ track wgEncodeReg4Epigenetics_ENCFF412YNF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF556WEK ENCSR858GTE Signal bigWig HG03442 ATAC signal 2 5588 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/04/a389aed6-477d-4612-9238-f4b54cad247d/ENCFF556WEK.bigWig\ color 2,199,185\ longLabel HG03442 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR858GTE Signal\ track wgEncodeReg4Epigenetics_ENCFF556WEK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF339QYU ENCSR859CZM Peak bigBed 5 Occipital lobe tissue male adult 84 years DNase peak 4 5589 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/bc0dbf5c-2b15-4697-8e51-adfc0916c79d/ENCFF339QYU.bigBed\ color 6,218,147\ labelFields none\ longLabel Occipital lobe tissue male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR859HEW Peak\ track wgEncodeReg4Epigenetics_ENCFF320LBO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF660FQT ENCSR859HEW Signal bigWig Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 5592 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/69ffbba7-443e-4b24-b708-67b10045e227/ENCFF660FQT.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR859HEW Signal\ track wgEncodeReg4Epigenetics_ENCFF660FQT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF856NGX ENCSR859KGQ Peak bigBed 5 Right lung tissue female embryo 107 days DNase peak 4 5593 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/9f9b2561-7f88-46a0-83d6-4c7b68ae0d19/ENCFF856NGX.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lung tissue female embryo 107 days DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR860IDO Peak\ track wgEncodeReg4Epigenetics_ENCFF671AKB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF709RSH ENCSR860IDO Signal bigWig Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal 2 5598 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/e62a98bb-eee0-4092-acfa-5db448ea2008/ENCFF709RSH.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell female adult 33 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR860IDO Signal\ track wgEncodeReg4Epigenetics_ENCFF709RSH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF323TMD ENCSR860NDZ Peak bigBed 5 Small intestine tissue female embryo 105 days DNase peak 4 5599 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/d264178b-91e1-497c-99eb-a10940fc89e4/ENCFF323TMD.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue female embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR860NDZ Peak\ track wgEncodeReg4Epigenetics_ENCFF323TMD\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF514NYA ENCSR860NDZ Signal bigWig Small intestine tissue female embryo 105 days DNase signal 2 5600 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/3f08db5c-0acf-44ab-8feb-135fd3b3ca6e/ENCFF514NYA.bigWig\ color 6,218,147\ longLabel Small intestine tissue female embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR860NDZ Signal\ track wgEncodeReg4Epigenetics_ENCFF514NYA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF060ZDD ENCSR860TEJ Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak 4 5601 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/d5c98f58-c122-4aa1-a6f6-574cadbd5ea8/ENCFF060ZDD.bigBed\ color 181,145,0\ longLabel Middle frontal area 46 tissue female adult 90 or above years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR868ZOR Peak\ track wgEncodeReg4Epigenetics_ENCFF200MOO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF306RJQ ENCSR868ZOR Signal bigWig Pancreas tissue female adult 59 years H3K27ac signal 2 5639 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/84649e81-ebe3-4cc5-8faf-6837a55f65f1/ENCFF306RJQ.bigWig\ color 181,145,0\ longLabel Pancreas tissue female adult 59 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR868ZOR Signal\ track wgEncodeReg4Epigenetics_ENCFF306RJQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF015CRM ENCSR869JYO Peak bigBed 5 T-helper 2 cell male adult 42 years DNase peak 4 5640 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/60afbace-f967-4284-b141-5c384f0b7a58/ENCFF015CRM.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 2 cell male adult 42 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869JYO Peak\ track wgEncodeReg4Epigenetics_ENCFF015CRM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF869VIC ENCSR869JYO Signal bigWig T-helper 2 cell male adult 42 years DNase signal 2 5641 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/a7f0b4e7-331e-4d2a-a93a-801f37e5058c/ENCFF869VIC.bigWig\ color 6,218,147\ longLabel T-helper 2 cell male adult 42 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869JYO Signal\ track wgEncodeReg4Epigenetics_ENCFF869VIC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF185FNU ENCSR869QEN Peak bigBed 5 CD8-positive, alpha-beta memory T cell H3K4me3 peak 4 5642 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/903f1bee-a512-4cb1-9689-066aa4a654c8/ENCFF185FNU.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869QEN Peak\ track wgEncodeReg4Epigenetics_ENCFF185FNU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF454FEA ENCSR869QEN Signal bigWig CD8-positive, alpha-beta memory T cell H3K4me3 signal 2 5643 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/01860bdc-3dfa-4bef-9dd1-6f49b20ec996/ENCFF454FEA.bigWig\ color 255,0,0\ longLabel CD8-positive, alpha-beta memory T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869QEN Signal\ track wgEncodeReg4Epigenetics_ENCFF454FEA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF437DHQ ENCSR869TDT Peak bigBed 5 Squamous cell carcinoma skin epidermis tissue female adult 80 years H3K27ac peak 4 5644 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/fc40736b-ac9f-4901-a33f-c824f1658e2c/ENCFF437DHQ.bigBed\ color 181,145,0\ longLabel Squamous cell carcinoma skin epidermis tissue female adult 80 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869TDT Peak\ track wgEncodeReg4Epigenetics_ENCFF437DHQ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF319LCS ENCSR869TDT Signal bigWig Squamous cell carcinoma skin epidermis tissue female adult 80 years H3K27ac signal 2 5645 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/0a0d2f2a-e539-45c4-8dfa-1c5a4d66004d/ENCFF319LCS.bigWig\ color 181,145,0\ longLabel Squamous cell carcinoma skin epidermis tissue female adult 80 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869TDT Signal\ track wgEncodeReg4Epigenetics_ENCFF319LCS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF965ALS ENCSR869XBX Peak bigBed 5 Mucosa of descending colon tissue male adult 40 years H3K4me3 peak 4 5646 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/a82fee13-faa9-438f-b5df-4b0475f061ce/ENCFF965ALS.bigBed\ color 255,0,0\ longLabel Mucosa of descending colon tissue male adult 40 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869XBX Peak\ track wgEncodeReg4Epigenetics_ENCFF965ALS\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF258EWK ENCSR869XBX Signal bigWig Mucosa of descending colon tissue male adult 40 years H3K4me3 signal 2 5647 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/3b0e7850-a268-463c-a9bd-9708345dc20b/ENCFF258EWK.bigWig\ color 255,0,0\ longLabel Mucosa of descending colon tissue male adult 40 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR869XBX Signal\ track wgEncodeReg4Epigenetics_ENCFF258EWK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF728HFG ENCSR871APX Peak bigBed 5 Right kidney tissue female embryo 147 days DNase peak 4 5648 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ef96d3f4-ccb3-41f6-bfa5-61563fde11ef/ENCFF728HFG.bigBed\ color 6,218,147\ labelFields none\ longLabel Right kidney tissue female embryo 147 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR871APX Peak\ track wgEncodeReg4Epigenetics_ENCFF728HFG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF844BOT ENCSR871APX Signal bigWig Right kidney tissue female embryo 147 days DNase signal 2 5649 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/a86fc5f2-4d8f-473f-8075-1286238e3564/ENCFF844BOT.bigWig\ color 6,218,147\ longLabel Right kidney tissue female embryo 147 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR871APX Signal\ track wgEncodeReg4Epigenetics_ENCFF844BOT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF905VZH ENCSR871MKQ Peak bigBed 5 H9 CTCF peak 4 5650 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/d55b7b30-088a-479a-9f71-b436f9c984a3/ENCFF905VZH.bigBed\ color 0,176,240\ labelFields none\ longLabel H9 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR871MKQ Peak\ track wgEncodeReg4Epigenetics_ENCFF905VZH\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF963CHU ENCSR871MKQ Signal bigWig H9 CTCF signal 2 5651 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/0f487d96-8c15-4a64-a34d-32d051003f4a/ENCFF963CHU.bigWig\ color 0,176,240\ longLabel H9 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR871MKQ Signal\ track wgEncodeReg4Epigenetics_ENCFF963CHU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF565YTM ENCSR871TIY Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 5652 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e13493c9-6d9d-474a-b697-d06e3b6e8253/ENCFF565YTM.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR871TIY Peak\ track wgEncodeReg4Epigenetics_ENCFF565YTM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF380TOJ ENCSR871TIY Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 5653 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/b7e1da81-7a11-4f3b-9fb3-44bdace109a6/ENCFF380TOJ.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens RAD21 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR871TIY Signal\ track wgEncodeReg4Epigenetics_ENCFF380TOJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF951ERP ENCSR872DUY Peak bigBed 5 Ovary tissue female adult 41 years DNase peak 4 5654 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/3f390437-cc99-4779-b8e2-2395715aeb7d/ENCFF951ERP.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872DUY Peak\ track wgEncodeReg4Epigenetics_ENCFF951ERP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF779FIH ENCSR872DUY Signal bigWig Ovary tissue female adult 41 years DNase signal 2 5655 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/5e75cded-a312-4b93-9d2b-7ec28e99f609/ENCFF779FIH.bigWig\ color 6,218,147\ longLabel Ovary tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872DUY Signal\ track wgEncodeReg4Epigenetics_ENCFF779FIH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF865WQU ENCSR872IXQ Peak bigBed 5 T-helper 2 cell male adult 30 years DNase peak 4 5656 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/9fec4433-b7bf-4917-ab08-0feb20322eb2/ENCFF865WQU.bigBed\ color 6,218,147\ labelFields none\ longLabel T-helper 2 cell male adult 30 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872IXQ Peak\ track wgEncodeReg4Epigenetics_ENCFF865WQU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF198SMG ENCSR872IXQ Signal bigWig T-helper 2 cell male adult 30 years DNase signal 2 5657 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/5039a5be-a0e8-4d6b-a07a-9d0f08298109/ENCFF198SMG.bigWig\ color 6,218,147\ longLabel T-helper 2 cell male adult 30 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872IXQ Signal\ track wgEncodeReg4Epigenetics_ENCFF198SMG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF068PVP ENCSR872WGW Peak bigBed 5 HCT116 ATAC peak 4 5658 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/9faef503-b729-4caf-ba5a-aad01cf8f7b7/ENCFF068PVP.bigBed\ color 2,199,185\ longLabel HCT116 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872WGW Peak\ track wgEncodeReg4Epigenetics_ENCFF068PVP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF259PSA ENCSR872WGW Signal bigWig HCT116 ATAC signal 2 5659 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/65bdd7d9-5414-4d98-9ddc-96c27223e76b/ENCFF259PSA.bigWig\ color 2,199,185\ longLabel HCT116 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872WGW Signal\ track wgEncodeReg4Epigenetics_ENCFF259PSA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF955FVE ENCSR872YGQ Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K27ac peak 4 5660 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/ff410e96-d986-4bdf-81e7-c7ad793dd4e9/ENCFF955FVE.bigBed\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872YGQ Peak\ track wgEncodeReg4Epigenetics_ENCFF955FVE\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF380WZB ENCSR872YGQ Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K27ac signal 2 5661 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/12/14/cb16e5f7-8313-47c7-b54f-c062cdc9c4c9/ENCFF380WZB.bigWig\ color 181,145,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR872YGQ Signal\ track wgEncodeReg4Epigenetics_ENCFF380WZB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF235ERC ENCSR873ANE Peak bigBed 5 Kidney tissue female embryo 76 days and male embryo 76 days DNase peak 4 5662 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/7d949918-4447-469a-9d89-b97b8a495af3/ENCFF235ERC.bigBed\ color 6,218,147\ labelFields none\ longLabel Kidney tissue female embryo 76 days and male embryo 76 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR873ANE Peak\ track wgEncodeReg4Epigenetics_ENCFF235ERC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF475UUM ENCSR873ANE Signal bigWig Kidney tissue female embryo 76 days and male embryo 76 days DNase signal 2 5663 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/5191cff5-844c-42f2-869d-1a156d15ef8b/ENCFF475UUM.bigWig\ color 6,218,147\ longLabel Kidney tissue female embryo 76 days and male embryo 76 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR873ANE Signal\ track wgEncodeReg4Epigenetics_ENCFF475UUM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF504YRH ENCSR873SVP Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 5664 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/92c4f742-d595-43a1-8cb8-025bfeced54f/ENCFF504YRH.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR873SVP Peak\ track wgEncodeReg4Epigenetics_ENCFF504YRH\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF937FKH ENCSR873SVP Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 5665 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/97274fae-ca5f-4a7e-8a1c-0c0c762adf8b/ENCFF937FKH.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens MED14 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR873SVP Signal\ track wgEncodeReg4Epigenetics_ENCFF937FKH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF952NMO ENCSR874CAK Peak bigBed 5 Large intestine tissue female embryo 108 days DNase peak 4 5666 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/a0c2c1c5-67b5-4351-9683-27017db75c3d/ENCFF952NMO.bigBed\ color 6,218,147\ labelFields none\ longLabel Large intestine tissue female embryo 108 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874CAK Peak\ track wgEncodeReg4Epigenetics_ENCFF952NMO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF451GMR ENCSR874CAK Signal bigWig Large intestine tissue female embryo 108 days DNase signal 2 5667 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/836b1852-1561-4046-8567-ee84c0236f7b/ENCFF451GMR.bigWig\ color 6,218,147\ longLabel Large intestine tissue female embryo 108 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874CAK Signal\ track wgEncodeReg4Epigenetics_ENCFF451GMR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF074UVF ENCSR874GAJ Peak bigBed 5 K562 treated with 5 μM C646 for 4 hours ATAC peak 4 5668 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/493ab59a-4363-4051-a9f3-e9710df57f8c/ENCFF074UVF.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM C646 for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874GAJ Peak\ track wgEncodeReg4Epigenetics_ENCFF074UVF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF895FCZ ENCSR874GAJ Signal bigWig K562 treated with 5 μM C646 for 4 hours ATAC signal 2 5669 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/34931726-d423-472b-94ea-23f7d272d1df/ENCFF895FCZ.bigWig\ color 2,199,185\ longLabel K562 treated with 5 μM C646 for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874GAJ Signal\ track wgEncodeReg4Epigenetics_ENCFF895FCZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF418LZJ ENCSR874GXS Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak 4 5670 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/b7f3a157-637d-455b-804f-a43ba0346307/ENCFF418LZJ.bigBed\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874GXS Peak\ track wgEncodeReg4Epigenetics_ENCFF418LZJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF075RIV ENCSR874GXS Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal 2 5671 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/14/649011ee-6f52-4949-a475-29c2d18a1e05/ENCFF075RIV.bigWig\ color 2,199,185\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens CDK7 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874GXS Signal\ track wgEncodeReg4Epigenetics_ENCFF075RIV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF631ENP ENCSR874WOB Peak bigBed 5 Trophoblast cell originated from H1 H3K4me3 peak 4 5672 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/9b5df836-0ec4-4210-9f42-d75769e4f872/ENCFF631ENP.bigBed\ color 255,0,0\ longLabel Trophoblast cell originated from H1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874WOB Peak\ track wgEncodeReg4Epigenetics_ENCFF631ENP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF727PNB ENCSR874WOB Signal bigWig Trophoblast cell originated from H1 H3K4me3 signal 2 5673 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/f6dab580-8e73-4268-95e0-e74b81536a2d/ENCFF727PNB.bigWig\ color 255,0,0\ longLabel Trophoblast cell originated from H1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR874WOB Signal\ track wgEncodeReg4Epigenetics_ENCFF727PNB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF485AAA ENCSR875IVR Peak bigBed 5 Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase peak 4 5674 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/09/640465d7-5c3c-465e-b2c7-7e4da6b6093e/ENCFF485AAA.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR877OGW Peak\ track wgEncodeReg4Epigenetics_ENCFF383PUU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF352MMI ENCSR877OGW Signal bigWig Middle frontal area 46 tissue male adult 83 years H3K4me3 signal 2 5687 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/4ab59b30-a81f-43ec-8e97-85d659ec19ec/ENCFF352MMI.bigWig\ color 255,0,0\ longLabel Middle frontal area 46 tissue male adult 83 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR877OGW Signal\ track wgEncodeReg4Epigenetics_ENCFF352MMI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF401BQW ENCSR878ITC Peak bigBed 5 T-cell male adult 21 years DNase peak 4 5688 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/c22657eb-cd9f-4480-af66-fac0a90d8933/ENCFF401BQW.bigBed\ color 6,218,147\ labelFields none\ longLabel T-cell male adult 21 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR878VJL Peak\ track wgEncodeReg4Epigenetics_ENCFF679QZR\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF110HOX ENCSR878VJL Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A DNase signal 2 5695 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/04/01/87236ec3-682b-49e9-842e-9e9c9bff2e42/ENCFF110HOX.bigWig\ color 6,218,147\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens POLR2A DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR878VJL Signal\ track wgEncodeReg4Epigenetics_ENCFF110HOX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF311RKZ ENCSR878YHM Peak bigBed 5 Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak 4 5696 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/ca69a57c-bb26-486e-87dd-67bdd7a9ebb4/ENCFF311RKZ.bigBed\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR878YHM Peak\ track wgEncodeReg4Epigenetics_ENCFF311RKZ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF089MQX ENCSR878YHM Signal bigWig Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal 2 5697 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/bfb1b198-f478-444f-9c05-c81aad63b043/ENCFF089MQX.bigWig\ color 255,0,0\ longLabel Multiple sclerosis naive thymus-derived CD4-positive, alpha-beta T cell H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR878YHM Signal\ track wgEncodeReg4Epigenetics_ENCFF089MQX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF006NIX ENCSR879EVD Peak bigBed 5 Head of caudate nucleus tissue male adult 83 years DNase peak 4 5698 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/e7476325-d941-42f7-ac78-5e30f73d886d/ENCFF006NIX.bigBed\ color 6,218,147\ labelFields none\ longLabel Head of caudate nucleus tissue male adult 83 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR879EVD Peak\ track wgEncodeReg4Epigenetics_ENCFF006NIX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF354GAT ENCSR879EVD Signal bigWig Head of caudate nucleus tissue male adult 83 years DNase signal 2 5699 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/53136d8b-2433-4e67-a066-7b7674c6b698/ENCFF354GAT.bigWig\ color 6,218,147\ longLabel Head of caudate nucleus tissue male adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR879EVD Signal\ track wgEncodeReg4Epigenetics_ENCFF354GAT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF739WTP ENCSR879XUH Peak bigBed 5 Middle frontal area 46 tissue female adult 90 or above years DNase peak 4 5700 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/cde70d7a-7952-40e7-b419-0530d3bcfb15/ENCFF739WTP.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR880CUB Peak\ track wgEncodeReg4Epigenetics_ENCFF465NSC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF036SMP ENCSR880CUB Signal bigWig Middle frontal area 46 tissue male adult 83 years DNase signal 2 5703 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/07/3bb80588-7d2f-4f97-b07c-9b88f1dcf0e4/ENCFF036SMP.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue male adult 83 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR880CUB Signal\ track wgEncodeReg4Epigenetics_ENCFF036SMP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF303FIJ ENCSR881AOK Peak bigBed 5 CD8-positive, alpha-beta memory T cell H3K4me3 peak 4 5704 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/ad2e1ab9-cff4-496e-bc54-0bd0a2e14e8d/ENCFF303FIJ.bigBed\ color 255,0,0\ longLabel CD8-positive, alpha-beta memory T cell H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR885ZBV Peak\ track wgEncodeReg4Epigenetics_ENCFF698CJG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF820OSF ENCSR885ZBV Signal bigWig Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal 2 5737 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/51d812ec-d449-4708-a840-04400c7255a6/ENCFF820OSF.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment posterior cingulate gyrus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR885ZBV Signal\ track wgEncodeReg4Epigenetics_ENCFF820OSF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF090FCG ENCSR886LDA Peak bigBed 5 Memory B cell male adult 40 years H3K27ac peak 4 5738 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/e494fddd-1a84-4b1d-b2a1-0d0c22dbcc06/ENCFF090FCG.bigBed\ color 181,145,0\ longLabel Memory B cell male adult 40 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR912QMS Peak\ track wgEncodeReg4Epigenetics_ENCFF402MRB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF236JWD ENCSR912QMS Signal bigWig Pancreas tissue female adult 41 years H3K4me3 signal 2 5864 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/78e468e9-2f88-47ee-8f39-60061b83097a/ENCFF236JWD.bigWig\ color 255,0,0\ longLabel Pancreas tissue female adult 41 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR912QMS Signal\ track wgEncodeReg4Epigenetics_ENCFF236JWD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF671XCB ENCSR912TVO Peak bigBed 5 Layer of hippocampus tissue male adult 81 years H3K27ac peak 4 5865 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/cef0f67d-abeb-4065-b7b8-163e2f35f19f/ENCFF671XCB.bigBed\ color 181,145,0\ longLabel Layer of hippocampus tissue male adult 81 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR913OWV Peak\ track wgEncodeReg4Epigenetics_ENCFF228LXZ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF347SHR ENCSR913OWV Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal 2 5872 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/13/49070025-3a92-4de6-92f1-f25949a661c9/ENCFF347SHR.bigWig\ color 2,199,185\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR913OWV Signal\ track wgEncodeReg4Epigenetics_ENCFF347SHR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF277YTN ENCSR913SEI Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 86 years CTCF peak 4 5873 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/7bb40d87-e1f7-4bf9-98a2-7a68b931e52b/ENCFF277YTN.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 86 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR913SEI Peak\ track wgEncodeReg4Epigenetics_ENCFF277YTN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF754BJX ENCSR913SEI Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 86 years CTCF signal 2 5874 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/2e4a0be4-815f-4584-b35d-ee5d23955dc9/ENCFF754BJX.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 86 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR913SEI Signal\ track wgEncodeReg4Epigenetics_ENCFF754BJX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF109LWO ENCSR914DOH Peak bigBed 5 Heart tissue female embryo 103 days DNase peak 4 5875 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/241429d5-f94c-4539-b547-ad9aecbbf404/ENCFF109LWO.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart tissue female embryo 103 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR914DOH Peak\ track wgEncodeReg4Epigenetics_ENCFF109LWO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF379QDO ENCSR914DOH Signal bigWig Heart tissue female embryo 103 days DNase signal 2 5876 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ac12c846-b9a8-416b-b8ad-e3fbdaf4b13d/ENCFF379QDO.bigWig\ color 6,218,147\ longLabel Heart tissue female embryo 103 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR914DOH Signal\ track wgEncodeReg4Epigenetics_ENCFF379QDO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF490RKG ENCSR914DTI Peak bigBed 5 Thyroid gland tissue female adult 53 years ATAC peak 4 5877 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/948c4d9a-fdd1-473a-9a0c-9b532887b18f/ENCFF490RKG.bigBed\ color 2,199,185\ longLabel Thyroid gland tissue female adult 53 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR914DTI Peak\ track wgEncodeReg4Epigenetics_ENCFF490RKG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF030MOD ENCSR914DTI Signal bigWig Thyroid gland tissue female adult 53 years ATAC signal 2 5878 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/f2c58465-8cf9-479a-8a6b-4165c20d7b4d/ENCFF030MOD.bigWig\ color 2,199,185\ longLabel Thyroid gland tissue female adult 53 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR914DTI Signal\ track wgEncodeReg4Epigenetics_ENCFF030MOD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF057VZD ENCSR915ISE Peak bigBed 5 IgD-negative memory B cell H3K27ac peak 4 5879 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/54d39a29-6b05-47e1-8ccc-40a80f32c3d5/ENCFF057VZD.bigBed\ color 181,145,0\ longLabel IgD-negative memory B cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR915ISE Peak\ track wgEncodeReg4Epigenetics_ENCFF057VZD\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF547IQF ENCSR915ISE Signal bigWig IgD-negative memory B cell H3K27ac signal 2 5880 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/f3596843-e439-43d5-835f-1de078c51797/ENCFF547IQF.bigWig\ color 181,145,0\ longLabel IgD-negative memory B cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR915ISE Signal\ track wgEncodeReg4Epigenetics_ENCFF547IQF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF791AAO ENCSR915MTG Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC peak 4 5881 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/03/283236ca-868f-4ec6-9b83-38fff6f8583a/ENCFF791AAO.bigBed\ color 2,199,185\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR915MTG Peak\ track wgEncodeReg4Epigenetics_ENCFF791AAO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF566VPO ENCSR915MTG Signal bigWig Stimulated activated CD8-positive, alpha-beta memory T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC signal 2 5882 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/03/5b19e2ec-18b9-4e8a-bbb8-450700c3411c/ENCFF566VPO.bigWig\ color 2,199,185\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR915MTG Signal\ track wgEncodeReg4Epigenetics_ENCFF566VPO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF531XDK ENCSR915QOL Peak bigBed 5 Fibroblast of lung female child 11 years and male adult 45 years H3K4me3 peak 4 5883 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/5e91bd43-8159-4566-92cb-f7e0590f91dc/ENCFF531XDK.bigBed\ color 255,0,0\ longLabel Fibroblast of lung female child 11 years and male adult 45 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR923VTG Peak\ track wgEncodeReg4Epigenetics_ENCFF482IAF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF538SJJ ENCSR923VTG Signal bigWig Lower lobe of right lung tissue male adult 60 years ATAC signal 2 5928 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/d8509c41-a98c-420c-94ca-02cd48f985eb/ENCFF538SJJ.bigWig\ color 2,199,185\ longLabel Lower lobe of right lung tissue male adult 60 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR923VTG Signal\ track wgEncodeReg4Epigenetics_ENCFF538SJJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF287XVA ENCSR924IHU Peak bigBed 5 Posterior cingulate gyrus tissue female adult 84 years DNase peak 4 5929 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/48ee0ac4-1e7b-4cd9-bed5-684e75b76fe5/ENCFF287XVA.bigBed\ color 6,218,147\ labelFields none\ longLabel Posterior cingulate gyrus tissue female adult 84 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928PKL Peak\ track wgEncodeReg4Epigenetics_ENCFF262ITI\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF987RXP ENCSR928PKL Signal bigWig Cognitive impairment middle frontal area 46 tissue female adult 81 years DNase signal 2 5946 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/12/2687f14a-4074-40d4-9881-affd6540b492/ENCFF987RXP.bigWig\ color 6,218,147\ longLabel Cognitive impairment middle frontal area 46 tissue female adult 81 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928PKL Signal\ track wgEncodeReg4Epigenetics_ENCFF987RXP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF333ALW ENCSR928PSU Peak bigBed 5 CD8-positive, alpha-beta T cell male adult 21 years H3K27ac peak 4 5947 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/72103529-be0c-461f-a7a0-2e40ba52514c/ENCFF333ALW.bigBed\ color 181,145,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928PSU Peak\ track wgEncodeReg4Epigenetics_ENCFF333ALW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF272WIY ENCSR928PSU Signal bigWig CD8-positive, alpha-beta T cell male adult 21 years H3K27ac signal 2 5948 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/6746c0e1-2c5c-4f82-952c-0f74499b5ce8/ENCFF272WIY.bigWig\ color 181,145,0\ longLabel CD8-positive, alpha-beta T cell male adult 21 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928PSU Signal\ track wgEncodeReg4Epigenetics_ENCFF272WIY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF027ORH ENCSR928RNP Peak bigBed 5 Heart right ventricle tissue male adult 43 years CTCF peak 4 5949 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/6d1a4bc1-fa89-4966-b7e1-8848ab44caab/ENCFF027ORH.bigBed\ color 0,176,240\ labelFields none\ longLabel Heart right ventricle tissue male adult 43 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928RNP Peak\ track wgEncodeReg4Epigenetics_ENCFF027ORH\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF505OIJ ENCSR928RNP Signal bigWig Heart right ventricle tissue male adult 43 years CTCF signal 2 5950 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/16/38abd6ab-5c27-4bab-b81a-fcaa7413b456/ENCFF505OIJ.bigWig\ color 0,176,240\ longLabel Heart right ventricle tissue male adult 43 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928RNP Signal\ track wgEncodeReg4Epigenetics_ENCFF505OIJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF964NBK ENCSR928SPE Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 5951 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/6cbdb1d3-1ae3-490d-858b-f3d1a28775f8/ENCFF964NBK.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928SPE Peak\ track wgEncodeReg4Epigenetics_ENCFF964NBK\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF889GHD ENCSR928SPE Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal 2 5952 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/99ce1ddf-9cf2-4e5c-b1a1-70c8697e6f2f/ENCFF889GHD.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928SPE Signal\ track wgEncodeReg4Epigenetics_ENCFF889GHD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF812RES ENCSR928SYE Peak bigBed 5 Left renal cortex interstitium tissue male embryo 105 days DNase peak 4 5953 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ccc8a258-ed55-4c7c-8942-cf534de16a20/ENCFF812RES.bigBed\ color 6,218,147\ labelFields none\ longLabel Left renal cortex interstitium tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928SYE Peak\ track wgEncodeReg4Epigenetics_ENCFF812RES\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF675DRF ENCSR928SYE Signal bigWig Left renal cortex interstitium tissue male embryo 105 days DNase signal 2 5954 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/ddc5f01a-fc89-4d53-8a1d-2245fbb65860/ENCFF675DRF.bigWig\ color 6,218,147\ longLabel Left renal cortex interstitium tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928SYE Signal\ track wgEncodeReg4Epigenetics_ENCFF675DRF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF587RKN ENCSR928WMU Peak bigBed 5 Heart right ventricle tissue male adult 66 years DNase peak 4 5955 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/e9246767-3362-45ce-8937-c6da6dc7b532/ENCFF587RKN.bigBed\ color 6,218,147\ labelFields none\ longLabel Heart right ventricle tissue male adult 66 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928WMU Peak\ track wgEncodeReg4Epigenetics_ENCFF587RKN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF700MXZ ENCSR928WMU Signal bigWig Heart right ventricle tissue male adult 66 years DNase signal 2 5956 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/47eaa0d3-41bc-4414-9c0a-6ccbb1187723/ENCFF700MXZ.bigWig\ color 6,218,147\ longLabel Heart right ventricle tissue male adult 66 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR928WMU Signal\ track wgEncodeReg4Epigenetics_ENCFF700MXZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF388BBB ENCSR929TOD Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak 4 5957 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/6c64c739-51e5-4fe4-a4b4-8bbc30b6991a/ENCFF388BBB.bigBed\ color 255,0,0\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 90 or above years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930HLX Peak\ track wgEncodeReg4Epigenetics_ENCFF216ZBC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF314WYI ENCSR930HLX Signal bigWig Thoracic aorta tissue male adult 54 years H3K4me3 signal 2 5964 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/3e00a85c-262a-42de-9a3b-5dce18900e35/ENCFF314WYI.bigWig\ color 255,0,0\ longLabel Thoracic aorta tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930HLX Signal\ track wgEncodeReg4Epigenetics_ENCFF314WYI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF865PWK ENCSR930PDT Peak bigBed 5 Ovary tissue female adult 53 years DNase peak 4 5965 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/e3302d64-f12e-4523-8a33-492b958d7043/ENCFF865PWK.bigBed\ color 6,218,147\ labelFields none\ longLabel Ovary tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930PDT Peak\ track wgEncodeReg4Epigenetics_ENCFF865PWK\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF764IRG ENCSR930PDT Signal bigWig Ovary tissue female adult 53 years DNase signal 2 5966 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/e4628148-a8cb-49a6-913c-a3d059db80be/ENCFF764IRG.bigWig\ color 6,218,147\ longLabel Ovary tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930PDT Signal\ track wgEncodeReg4Epigenetics_ENCFF764IRG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF685VRG ENCSR930SOT Peak bigBed 5 Brain organoid female embryo 5 days, 30 days post differentiation CTCF peak 4 5967 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/fe18a727-ed14-40df-a5d7-1d0806efedfa/ENCFF685VRG.bigBed\ color 0,176,240\ labelFields none\ longLabel Brain organoid female embryo 5 days, 30 days post differentiation CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930SOT Peak\ track wgEncodeReg4Epigenetics_ENCFF685VRG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF305GTF ENCSR930SOT Signal bigWig Brain organoid female embryo 5 days, 30 days post differentiation CTCF signal 2 5968 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/09/4ec6a5da-6e0e-4f16-be75-b58f8aa1338f/ENCFF305GTF.bigWig\ color 0,176,240\ longLabel Brain organoid female embryo 5 days, 30 days post differentiation CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930SOT Signal\ track wgEncodeReg4Epigenetics_ENCFF305GTF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF975EKZ ENCSR930USX Peak bigBed 5 CD4-positive, alpha-beta T cell male adult 42 years DNase peak 4 5969 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/3fe9ebb3-ac86-4341-a242-550ae7c565a1/ENCFF975EKZ.bigBed\ color 6,218,147\ labelFields none\ longLabel CD4-positive, alpha-beta T cell male adult 42 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930USX Peak\ track wgEncodeReg4Epigenetics_ENCFF975EKZ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF627YJN ENCSR930USX Signal bigWig CD4-positive, alpha-beta T cell male adult 42 years DNase signal 2 5970 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/03/d49abdf4-332c-45e4-98a6-b1a617324001/ENCFF627YJN.bigWig\ color 6,218,147\ longLabel CD4-positive, alpha-beta T cell male adult 42 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930USX Signal\ track wgEncodeReg4Epigenetics_ENCFF627YJN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF014FEY ENCSR930YSB Peak bigBed 5 Stomach tissue female embryo 96 days DNase peak 4 5971 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/681cbdec-b552-4564-bb76-598401eaebb7/ENCFF014FEY.bigBed\ color 6,218,147\ labelFields none\ longLabel Stomach tissue female embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930YSB Peak\ track wgEncodeReg4Epigenetics_ENCFF014FEY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF633SRN ENCSR930YSB Signal bigWig Stomach tissue female embryo 96 days DNase signal 2 5972 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/8c6ecd8d-075c-4b1e-91db-271d9c8ee6d6/ENCFF633SRN.bigWig\ color 6,218,147\ longLabel Stomach tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR930YSB Signal\ track wgEncodeReg4Epigenetics_ENCFF633SRN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF212UID ENCSR931UQB Peak bigBed 5 Small intestine tissue male adult 34 years DNase peak 4 5973 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/3b75cb9c-2a35-4b69-af55-5050e39dccea/ENCFF212UID.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue male adult 34 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR931UQB Peak\ track wgEncodeReg4Epigenetics_ENCFF212UID\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF208PEH ENCSR931UQB Signal bigWig Small intestine tissue male adult 34 years DNase signal 2 5974 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/e4bc6d89-dce9-4e25-a6df-c659c0f29e4b/ENCFF208PEH.bigWig\ color 6,218,147\ longLabel Small intestine tissue male adult 34 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR931UQB Signal\ track wgEncodeReg4Epigenetics_ENCFF208PEH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF242KTT ENCSR931WLE Peak bigBed 5 Mesodermal cell originated from HUES64 H3K27ac peak 4 5975 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/1f6743ad-61b5-4056-9ce7-8ad75cf81bb4/ENCFF242KTT.bigBed\ color 181,145,0\ longLabel Mesodermal cell originated from HUES64 H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR931WLE Peak\ track wgEncodeReg4Epigenetics_ENCFF242KTT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF376TDW ENCSR931WLE Signal bigWig Mesodermal cell originated from HUES64 H3K27ac signal 2 5976 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/10/53918f36-7f1f-4e48-8c40-0d57d899516a/ENCFF376TDW.bigWig\ color 181,145,0\ longLabel Mesodermal cell originated from HUES64 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR931WLE Signal\ track wgEncodeReg4Epigenetics_ENCFF376TDW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF960ZGM ENCSR932DHT Peak bigBed 5 Renal cortex interstitium tissue female embryo 96 days DNase peak 4 5977 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/10/b3e16887-b57f-480f-b5e3-217f1e87fec1/ENCFF960ZGM.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal cortex interstitium tissue female embryo 96 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932DHT Peak\ track wgEncodeReg4Epigenetics_ENCFF960ZGM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF157MKL ENCSR932DHT Signal bigWig Renal cortex interstitium tissue female embryo 96 days DNase signal 2 5978 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/10/ae424340-ffd0-47bc-9004-8fdb251c6db7/ENCFF157MKL.bigWig\ color 6,218,147\ longLabel Renal cortex interstitium tissue female embryo 96 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932DHT Signal\ track wgEncodeReg4Epigenetics_ENCFF157MKL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF101TNF ENCSR932KWJ Peak bigBed 5 A172 DNase peak 4 5979 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/333b4004-a9af-4628-8edd-90f884837c8c/ENCFF101TNF.bigBed\ color 6,218,147\ labelFields none\ longLabel A172 DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932KWJ Peak\ track wgEncodeReg4Epigenetics_ENCFF101TNF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF962YGV ENCSR932KWJ Signal bigWig A172 DNase signal 2 5980 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/1f5a5457-a8f0-472f-8a6b-1a52a95cff0f/ENCFF962YGV.bigWig\ color 6,218,147\ longLabel A172 DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932KWJ Signal\ track wgEncodeReg4Epigenetics_ENCFF962YGV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF117VMO ENCSR932OSG Peak bigBed 5 Activated T-helper 1 cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak 4 5981 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/a0ea133c-9797-428f-9e41-293263cfb46c/ENCFF117VMO.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated T-helper 1 cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932OSG Peak\ track wgEncodeReg4Epigenetics_ENCFF117VMO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF329PET ENCSR932OSG Signal bigWig Activated T-helper 1 cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal 2 5982 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/24/16e2faf4-e4b8-4ee1-8cb1-2559e78f39f7/ENCFF329PET.bigWig\ color 6,218,147\ longLabel Activated T-helper 1 cell male adult 42 years treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932OSG Signal\ track wgEncodeReg4Epigenetics_ENCFF329PET\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF787EWJ ENCSR932QRC Peak bigBed 5 Heart left ventricle tissue male adult 43 years H3K27ac peak 4 5983 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/44b4b3eb-17f8-4f48-bcd3-07afd362dd9a/ENCFF787EWJ.bigBed\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 43 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932QRC Peak\ track wgEncodeReg4Epigenetics_ENCFF787EWJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF617TKL ENCSR932QRC Signal bigWig Heart left ventricle tissue male adult 43 years H3K27ac signal 2 5984 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/e29bbe04-8d6c-4311-b2b0-625e2bc32c6f/ENCFF617TKL.bigWig\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 43 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932QRC Signal\ track wgEncodeReg4Epigenetics_ENCFF617TKL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF255MAF ENCSR932XBJ Peak bigBed 5 Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years CTCF peak 4 5985 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/ec3e3bd0-5968-4203-9357-2c7eb4636d02/ENCFF255MAF.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932XBJ Peak\ track wgEncodeReg4Epigenetics_ENCFF255MAF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF982KVV ENCSR932XBJ Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years CTCF signal 2 5986 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/18304566-abe8-4eac-819a-94db93203a80/ENCFF982KVV.bigWig\ color 0,176,240\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue male adult 87 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932XBJ Signal\ track wgEncodeReg4Epigenetics_ENCFF982KVV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF772DML ENCSR932ZMX Peak bigBed 5 GM23338 originated from GM23248 CTCF peak 4 5987 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/e12ffcd1-9884-40b7-912a-2bd5b484a244/ENCFF772DML.bigBed\ color 0,176,240\ labelFields none\ longLabel GM23338 originated from GM23248 CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932ZMX Peak\ track wgEncodeReg4Epigenetics_ENCFF772DML\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF369MIX ENCSR932ZMX Signal bigWig GM23338 originated from GM23248 CTCF signal 2 5988 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/19/c83fceb2-4197-422c-8c54-285a38024584/ENCFF369MIX.bigWig\ color 0,176,240\ longLabel GM23338 originated from GM23248 CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR932ZMX Signal\ track wgEncodeReg4Epigenetics_ENCFF369MIX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF281HPM ENCSR933BVL Peak bigBed 5 Transverse colon tissue female adult 53 years H3K4me3 peak 4 5989 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/afc10e36-9813-4362-bf4f-906288609f03/ENCFF281HPM.bigBed\ color 255,0,0\ longLabel Transverse colon tissue female adult 53 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933BVL Peak\ track wgEncodeReg4Epigenetics_ENCFF281HPM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF339CRV ENCSR933BVL Signal bigWig Transverse colon tissue female adult 53 years H3K4me3 signal 2 5990 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/08/a4de7ba1-571b-4388-86e7-a91bff1022e0/ENCFF339CRV.bigWig\ color 255,0,0\ longLabel Transverse colon tissue female adult 53 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933BVL Signal\ track wgEncodeReg4Epigenetics_ENCFF339CRV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF925OBY ENCSR933GMM Peak bigBed 5 Right lobe of liver tissue female adult 41 years DNase peak 4 5991 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/3772e182-e92b-4002-82ce-988d42e69490/ENCFF925OBY.bigBed\ color 6,218,147\ labelFields none\ longLabel Right lobe of liver tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933GMM Peak\ track wgEncodeReg4Epigenetics_ENCFF925OBY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF082KAC ENCSR933GMM Signal bigWig Right lobe of liver tissue female adult 41 years DNase signal 2 5992 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/3482249d-e5ec-42bd-a942-e7ba1c387bb6/ENCFF082KAC.bigWig\ color 6,218,147\ longLabel Right lobe of liver tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933GMM Signal\ track wgEncodeReg4Epigenetics_ENCFF082KAC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF210HGM ENCSR933HFM Peak bigBed 5 Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase peak 4 5993 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/35e95a89-ffc4-465c-9348-2206e29adb2a/ENCFF210HGM.bigBed\ color 6,218,147\ labelFields none\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933HFM Peak\ track wgEncodeReg4Epigenetics_ENCFF210HGM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF151XQY ENCSR933HFM Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase signal 2 5994 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/923511f9-a873-40cb-81f6-c3ca07130fb6/ENCFF151XQY.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933HFM Signal\ track wgEncodeReg4Epigenetics_ENCFF151XQY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF138RDY ENCSR933VOY Peak bigBed 5 Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase peak 4 5995 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/66b19196-7144-44c6-96ee-2882a22581d9/ENCFF138RDY.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933VOY Peak\ track wgEncodeReg4Epigenetics_ENCFF138RDY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF314PGJ ENCSR933VOY Signal bigWig Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal 2 5996 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/28/87a3ea63-3d47-4eba-a74a-5a47e5409964/ENCFF314PGJ.bigWig\ color 6,218,147\ longLabel Activated CD8-positive, alpha-beta memory T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 24 hours DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR933VOY Signal\ track wgEncodeReg4Epigenetics_ENCFF314PGJ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF699RFM ENCSR934FTO Peak bigBed 5 K562 treated with 1 μM ARS-853 for 24 hours ATAC peak 4 5997 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/23c35e74-a450-4339-9326-a4c73e892dc2/ENCFF699RFM.bigBed\ color 2,199,185\ longLabel K562 treated with 1 μM ARS-853 for 24 hours ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935ELX Peak\ track wgEncodeReg4Epigenetics_ENCFF783HZN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF888BMF ENCSR935ELX Signal bigWig CD4-positive, alpha-beta memory T cell male adult 43 years H3K4me3 signal 2 6000 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/022c8840-6dc9-475c-a3a8-3f6a89aa769d/ENCFF888BMF.bigWig\ color 255,0,0\ longLabel CD4-positive, alpha-beta memory T cell male adult 43 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935ELX Signal\ track wgEncodeReg4Epigenetics_ENCFF888BMF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF299AOR ENCSR935EPK Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 87 years H3K4me3 peak 4 6001 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/db8e1d92-0fdd-469b-977c-0f4b881b7666/ENCFF299AOR.bigBed\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 87 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935EPK Peak\ track wgEncodeReg4Epigenetics_ENCFF299AOR\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF127DBK ENCSR935EPK Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 87 years H3K4me3 signal 2 6002 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/10/d8340664-95b3-4bdb-b543-8c4a1ac09ec2/ENCFF127DBK.bigWig\ color 255,0,0\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 87 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935EPK Signal\ track wgEncodeReg4Epigenetics_ENCFF127DBK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF994YLC ENCSR935EVZ Peak bigBed 5 Left lung tissue male embryo 115 days DNase peak 4 6003 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/9039b370-86bf-44f2-b209-dfc87d43ffbe/ENCFF994YLC.bigBed\ color 6,218,147\ labelFields none\ longLabel Left lung tissue male embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935EVZ Peak\ track wgEncodeReg4Epigenetics_ENCFF994YLC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF799EDE ENCSR935EVZ Signal bigWig Left lung tissue male embryo 115 days DNase signal 2 6004 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/d6336099-c26d-45ec-b3a7-417e2612cece/ENCFF799EDE.bigWig\ color 6,218,147\ longLabel Left lung tissue male embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935EVZ Signal\ track wgEncodeReg4Epigenetics_ENCFF799EDE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF557LKT ENCSR935HEI Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads DNase peak 4 6005 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/fa7da745-33ad-49f2-b1f1-e77f9d8c59c8/ENCFF557LKT.bigBed\ color 6,218,147\ labelFields none\ longLabel Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935HEI Peak\ track wgEncodeReg4Epigenetics_ENCFF557LKT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF685YHE ENCSR935HEI Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads DNase signal 2 6006 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/26/b929a910-66d4-455c-a672-92de9538a80c/ENCFF685YHE.bigWig\ color 6,218,147\ longLabel Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935HEI Signal\ track wgEncodeReg4Epigenetics_ENCFF685YHE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF564ZAP ENCSR935JVI Peak bigBed 5 K562 treated with 2.5 μM Galeterone for 48 hours ATAC peak 4 6007 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/4d82b6e3-9598-4688-8cc2-a1929f42fba7/ENCFF564ZAP.bigBed\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935JVI Peak\ track wgEncodeReg4Epigenetics_ENCFF564ZAP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF538PVC ENCSR935JVI Signal bigWig K562 treated with 2.5 μM Galeterone for 48 hours ATAC signal 2 6008 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/95daad29-c6e1-4e73-87d6-64c9efa9f9b8/ENCFF538PVC.bigWig\ color 2,199,185\ longLabel K562 treated with 2.5 μM Galeterone for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935JVI Signal\ track wgEncodeReg4Epigenetics_ENCFF538PVC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF794BIC ENCSR935SBZ Peak bigBed 5 Memory B cell male adult 40 years H3K4me3 peak 4 6009 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/62253352-ae12-4266-87e3-95a2cc93bbd5/ENCFF794BIC.bigBed\ color 255,0,0\ longLabel Memory B cell male adult 40 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935SBZ Peak\ track wgEncodeReg4Epigenetics_ENCFF794BIC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF165CYH ENCSR935SBZ Signal bigWig Memory B cell male adult 40 years H3K4me3 signal 2 6010 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/19e7e390-20d5-4bd4-8e79-ca34cac8ba64/ENCFF165CYH.bigWig\ color 255,0,0\ longLabel Memory B cell male adult 40 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR935SBZ Signal\ track wgEncodeReg4Epigenetics_ENCFF165CYH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF794NZP ENCSR936FAH Peak bigBed 5 Lung tissue female embryo 120 days H3K4me3 peak 4 6011 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/f2f36d83-571b-42ba-8cfc-33065eb733d8/ENCFF794NZP.bigBed\ color 255,0,0\ longLabel Lung tissue female embryo 120 days H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR936FAH Peak\ track wgEncodeReg4Epigenetics_ENCFF794NZP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF839NZT ENCSR936FAH Signal bigWig Lung tissue female embryo 120 days H3K4me3 signal 2 6012 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/14/e941f566-aca6-40f0-9873-1eb306f74926/ENCFF839NZT.bigWig\ color 255,0,0\ longLabel Lung tissue female embryo 120 days H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR936FAH Signal\ track wgEncodeReg4Epigenetics_ENCFF839NZT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF593ARH ENCSR936OPP Peak bigBed 5 Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak 4 6013 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/ac7a4975-841b-47ea-8e59-fd55555f321b/ENCFF593ARH.bigBed\ color 181,145,0\ longLabel Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR936OPP Peak\ track wgEncodeReg4Epigenetics_ENCFF593ARH\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF240ZJY ENCSR936OPP Signal bigWig Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal 2 6014 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/481eaea6-6b5e-4bff-97a9-741aed26b526/ENCFF240ZJY.bigWig\ color 181,145,0\ longLabel Natural killer cell male adult 47 years treated with 100 ng/mL Interleukin-18 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR936OPP Signal\ track wgEncodeReg4Epigenetics_ENCFF240ZJY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF872UHN ENCSR937EVN Peak bigBed 5 Sigmoid colon tissue male adult 54 years H3K27ac peak 4 6015 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/c38cd923-008e-4c39-a49f-feaf05263d93/ENCFF872UHN.bigBed\ color 181,145,0\ longLabel Sigmoid colon tissue male adult 54 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR937EVN Peak\ track wgEncodeReg4Epigenetics_ENCFF872UHN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF322NLT ENCSR937EVN Signal bigWig Sigmoid colon tissue male adult 54 years H3K27ac signal 2 6016 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/6259f934-d8c4-429a-9e9b-02ae0e1bb7e6/ENCFF322NLT.bigWig\ color 181,145,0\ longLabel Sigmoid colon tissue male adult 54 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR937EVN Signal\ track wgEncodeReg4Epigenetics_ENCFF322NLT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF300WSB ENCSR937RVN Peak bigBed 5 Muscle of leg tissue male embryo 115 days DNase peak 4 6017 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/647e4af0-a130-4dfc-8a07-065d428ab7a4/ENCFF300WSB.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of leg tissue male embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR937RVN Peak\ track wgEncodeReg4Epigenetics_ENCFF300WSB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF798GFU ENCSR937RVN Signal bigWig Muscle of leg tissue male embryo 115 days DNase signal 2 6018 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/53c895d0-dd58-4c3e-b3d9-5e8ace941a11/ENCFF798GFU.bigWig\ color 6,218,147\ longLabel Muscle of leg tissue male embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR937RVN Signal\ track wgEncodeReg4Epigenetics_ENCFF798GFU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF176GKX ENCSR937UWI Peak bigBed 5 Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days DNase peak 4 6019 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/ac3b3c34-7d5f-4e69-8022-446996690c46/ENCFF176GKX.bigBed\ color 6,218,147\ labelFields none\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR937UWI Peak\ track wgEncodeReg4Epigenetics_ENCFF176GKX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF322YXK ENCSR937UWI Signal bigWig Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days DNase signal 2 6020 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/679a0281-7038-4347-a2dc-4d1175536859/ENCFF322YXK.bigWig\ color 6,218,147\ longLabel Hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR937UWI Signal\ track wgEncodeReg4Epigenetics_ENCFF322YXK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF863CJO ENCSR938OKL Peak bigBed 5 Naive thymus-derived CD8-positive, alpha-beta T cell DNase peak 4 6021 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/1f3e9c29-0abf-4242-b144-86ada6fe987f/ENCFF863CJO.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD8-positive, alpha-beta T cell DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR956CFX Peak\ track wgEncodeReg4Epigenetics_ENCFF401CGN\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF114PLO ENCSR956CFX Signal bigWig Layer of hippocampus tissue male adult 81 years H3K4me3 signal 2 6138 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/e7f3900e-c15b-4d8e-badb-7b27fa2fe79b/ENCFF114PLO.bigWig\ color 255,0,0\ longLabel Layer of hippocampus tissue male adult 81 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR956CFX Signal\ track wgEncodeReg4Epigenetics_ENCFF114PLO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF061ECL ENCSR956CTX Peak bigBed 5 Neuronal stem cell originated from H1 H3K4me3 peak 4 6139 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/60634dd9-4b8b-414b-a2dd-28b170372178/ENCFF061ECL.bigBed\ color 255,0,0\ longLabel Neuronal stem cell originated from H1 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR956CTX Peak\ track wgEncodeReg4Epigenetics_ENCFF061ECL\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF872FDO ENCSR956CTX Signal bigWig Neuronal stem cell originated from H1 H3K4me3 signal 2 6140 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/f295c49a-4bac-42ee-8feb-a9eacd383609/ENCFF872FDO.bigWig\ color 255,0,0\ longLabel Neuronal stem cell originated from H1 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR956CTX Signal\ track wgEncodeReg4Epigenetics_ENCFF872FDO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF570BXA ENCSR956NOL Peak bigBed 5 Muscle of arm tissue male embryo 127 days DNase peak 4 6141 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/a01e2a72-1b8a-4dc3-92d0-db2775b33346/ENCFF570BXA.bigBed\ color 6,218,147\ labelFields none\ longLabel Muscle of arm tissue male embryo 127 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR956NOL Peak\ track wgEncodeReg4Epigenetics_ENCFF570BXA\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF131RJY ENCSR956NOL Signal bigWig Muscle of arm tissue male embryo 127 days DNase signal 2 6142 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/16/ef23c3c2-5e4e-4e21-b9b7-725f2054a0c1/ENCFF131RJY.bigWig\ color 6,218,147\ longLabel Muscle of arm tissue male embryo 127 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR956NOL Signal\ track wgEncodeReg4Epigenetics_ENCFF131RJY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF180WYX ENCSR956ZHU Peak bigBed 5 Renal pelvis tissue male embryo 113 days DNase peak 4 6143 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/11/eff86a3c-61ce-4640-95ba-0559f8da030a/ENCFF180WYX.bigBed\ color 6,218,147\ labelFields none\ longLabel Renal pelvis tissue male embryo 113 days DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957BPJ Peak\ track wgEncodeReg4Epigenetics_ENCFF093HRG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF624LJY ENCSR957BPJ Signal bigWig Aorta tissue male adult 34 years H3K4me3 signal 2 6146 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/10/a045d572-ad8b-494b-a8a4-f4e06538b525/ENCFF624LJY.bigWig\ color 255,0,0\ longLabel Aorta tissue male adult 34 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957BPJ Signal\ track wgEncodeReg4Epigenetics_ENCFF624LJY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF270VNP ENCSR957CYJ Peak bigBed 5 Neurosphere female embryo 17 weeks originated from cortex H3K4me3 peak 4 6147 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/c5e588d9-0842-43a5-8775-121aabbddbfa/ENCFF270VNP.bigBed\ color 255,0,0\ longLabel Neurosphere female embryo 17 weeks originated from cortex H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957CYJ Peak\ track wgEncodeReg4Epigenetics_ENCFF270VNP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF875CHR ENCSR957CYJ Signal bigWig Neurosphere female embryo 17 weeks originated from cortex H3K4me3 signal 2 6148 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/5285f5d0-52a0-46ae-8388-e8454d590915/ENCFF875CHR.bigWig\ color 255,0,0\ longLabel Neurosphere female embryo 17 weeks originated from cortex H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957CYJ Signal\ track wgEncodeReg4Epigenetics_ENCFF875CHR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF376EBP ENCSR957EOR Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 6149 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/c07dd5b2-4879-41b0-8571-780ec158570b/ENCFF376EBP.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957EOR Peak\ track wgEncodeReg4Epigenetics_ENCFF376EBP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF279SCT ENCSR957EOR Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 6150 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/e64b39f8-19cf-4c6b-8e93-97654fa45040/ENCFF279SCT.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens BRD4 treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957EOR Signal\ track wgEncodeReg4Epigenetics_ENCFF279SCT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF908LXX ENCSR957LSB Peak bigBed 5 Heart right ventricle tissue female adult 59 years H3K4me3 peak 4 6151 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/a0b98872-1404-4905-886b-ad9ff25d9f51/ENCFF908LXX.bigBed\ color 255,0,0\ longLabel Heart right ventricle tissue female adult 59 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957LSB Peak\ track wgEncodeReg4Epigenetics_ENCFF908LXX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF428HGT ENCSR957LSB Signal bigWig Heart right ventricle tissue female adult 59 years H3K4me3 signal 2 6152 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/7ce804b9-6f3b-4e37-8ecf-d2cb24ffb263/ENCFF428HGT.bigWig\ color 255,0,0\ longLabel Heart right ventricle tissue female adult 59 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957LSB Signal\ track wgEncodeReg4Epigenetics_ENCFF428HGT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF457ZGY ENCSR957UPE Peak bigBed 5 Alzheimer's disease middle frontal area 46 tissue female adult 89 years CTCF peak 4 6153 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/e4dcad66-1016-42de-87ee-53fa34e7f11e/ENCFF457ZGY.bigBed\ color 0,176,240\ labelFields none\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957UPE Peak\ track wgEncodeReg4Epigenetics_ENCFF457ZGY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF695EYC ENCSR957UPE Signal bigWig Alzheimer's disease middle frontal area 46 tissue female adult 89 years CTCF signal 2 6154 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/fd070bea-c285-4843-9021-4600c616c9ed/ENCFF695EYC.bigWig\ color 0,176,240\ longLabel Alzheimer's disease middle frontal area 46 tissue female adult 89 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957UPE Signal\ track wgEncodeReg4Epigenetics_ENCFF695EYC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF038AYW ENCSR957UQS Peak bigBed 5 Endocrine pancreas tissue male adult 45 years H3K4me3 peak 4 6155 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/12/fea048e8-e4cf-46a8-99ba-8bab56bccf8d/ENCFF038AYW.bigBed\ color 255,0,0\ longLabel Endocrine pancreas tissue male adult 45 years H3K4me3 peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957XEV Peak\ track wgEncodeReg4Epigenetics_ENCFF630DTE\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF575MWN ENCSR957XEV Signal bigWig T-helper 17 cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K4me3 signal 2 6158 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/03/a2d1bb0a-0ca3-4afd-8b00-8314b01eab24/ENCFF575MWN.bigWig\ color 255,0,0\ longLabel T-helper 17 cell treated with phorbol 13-acetate 12-myristate , ionomycin H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR957XEV Signal\ track wgEncodeReg4Epigenetics_ENCFF575MWN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF070FIZ ENCSR958CPV Peak bigBed 5 Squamous cell carcinoma skin epidermis tissue male adult 84 years H3K27ac peak 4 6159 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/590ff8e1-b734-4a6c-8baa-6b0c66ee291d/ENCFF070FIZ.bigBed\ color 181,145,0\ longLabel Squamous cell carcinoma skin epidermis tissue male adult 84 years H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR962OTG Peak\ track wgEncodeReg4Epigenetics_ENCFF832BEH\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF214GOQ ENCSR962OTG Signal bigWig From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal 2 6186 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/18/beb470e6-3268-4f39-b7c5-c41a5f622545/ENCFF214GOQ.bigWig\ color 255,0,0\ longLabel From a donor with amyotrophic lateral sclerosis motor neuron H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR962OTG Signal\ track wgEncodeReg4Epigenetics_ENCFF214GOQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF144PRF ENCSR962TDN Peak bigBed 5 K562 treated with 5 μM JQ1 for 12 hours ATAC peak 4 6187 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/ec261f60-f071-40b3-9bb5-e61ea543ac3b/ENCFF144PRF.bigBed\ color 2,199,185\ longLabel K562 treated with 5 μM JQ1 for 12 hours ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR963LVX Peak\ track wgEncodeReg4Epigenetics_ENCFF820OIF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF497DMG ENCSR963LVX Signal bigWig Chorionic villus tissue embryo 16 weeks H3K27ac signal 2 6194 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/29/00e9c2ef-445c-427e-af70-2f1f966fc8b2/ENCFF497DMG.bigWig\ color 181,145,0\ longLabel Chorionic villus tissue embryo 16 weeks H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR963LVX Signal\ track wgEncodeReg4Epigenetics_ENCFF497DMG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF323MNN ENCSR964MZQ Peak bigBed 5 Trophoblast cell embryo 39 weeks and embryo 40 weeks DNase peak 4 6195 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0b330187-97ec-48bf-a1a1-a1f9e681662c/ENCFF323MNN.bigBed\ color 6,218,147\ labelFields none\ longLabel Trophoblast cell embryo 39 weeks and embryo 40 weeks DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR966RWA Peak\ track wgEncodeReg4Epigenetics_ENCFF574WJV\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF950LIB ENCSR966RWA Signal bigWig Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal 2 6212 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/09/17/3a4c88da-193f-4860-8033-502431983121/ENCFF950LIB.bigWig\ color 181,145,0\ longLabel Alzheimer's disease, Cognitive impairment middle frontal area 46 tissue female adult 90 or above years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR966RWA Signal\ track wgEncodeReg4Epigenetics_ENCFF950LIB\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF349XYG ENCSR966ZCL Peak bigBed 5 K562 treated with 10 nM Chaetocin for 48 hours ATAC peak 4 6213 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/72e7cd97-2cd9-45d1-a76a-53adc3b66040/ENCFF349XYG.bigBed\ color 2,199,185\ longLabel K562 treated with 10 nM Chaetocin for 48 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR966ZCL Peak\ track wgEncodeReg4Epigenetics_ENCFF349XYG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF188JVM ENCSR966ZCL Signal bigWig K562 treated with 10 nM Chaetocin for 48 hours ATAC signal 2 6214 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/404a4803-76ef-44fb-bfec-65273bebe53e/ENCFF188JVM.bigWig\ color 2,199,185\ longLabel K562 treated with 10 nM Chaetocin for 48 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR966ZCL Signal\ track wgEncodeReg4Epigenetics_ENCFF188JVM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF121QGK ENCSR967BSF Peak bigBed 5 Spleen tissue female adult 41 years CTCF peak 4 6215 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/44cf02f6-1585-42c7-8d58-44e829ec051b/ENCFF121QGK.bigBed\ color 0,176,240\ labelFields none\ longLabel Spleen tissue female adult 41 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR967BSF Peak\ track wgEncodeReg4Epigenetics_ENCFF121QGK\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF215HQE ENCSR967BSF Signal bigWig Spleen tissue female adult 41 years CTCF signal 2 6216 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/95507f1f-3071-4068-b0c3-be4e05daa9ad/ENCFF215HQE.bigWig\ color 0,176,240\ longLabel Spleen tissue female adult 41 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR967BSF Signal\ track wgEncodeReg4Epigenetics_ENCFF215HQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF458OBF ENCSR967QUQ Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue male adult 89 years CTCF peak 4 6217 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/4b56677f-4dcf-4d49-b61d-c861027d0068/ENCFF458OBF.bigBed\ color 0,176,240\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 89 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR967QUQ Peak\ track wgEncodeReg4Epigenetics_ENCFF458OBF\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF341CQE ENCSR967QUQ Signal bigWig Mild cognitive impairment middle frontal area 46 tissue male adult 89 years CTCF signal 2 6218 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/04/12/c5d913c7-bf61-48d1-a053-1db0297e1390/ENCFF341CQE.bigWig\ color 0,176,240\ longLabel Mild cognitive impairment middle frontal area 46 tissue male adult 89 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics on\ shortLabel ENCSR967QUQ Signal\ track wgEncodeReg4Epigenetics_ENCFF341CQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF022SDS ENCSR968TPO Signal bigWig Ascending aorta tissue female adult 53 years DNase signal 2 6219 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/6b27f762-99ea-40bf-830a-94e4c4c51b44/ENCFF022SDS.bigWig\ color 6,218,147\ longLabel Ascending aorta tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR968TPO Signal\ track wgEncodeReg4Epigenetics_ENCFF022SDS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF784MJJ ENCSR969HBF Peak bigBed 5 Skin epidermis tissue male adult 58 years H3K27ac peak 4 6220 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/2b4be9bc-b03c-4595-a3b0-09a13e103313/ENCFF784MJJ.bigBed\ color 181,145,0\ longLabel Skin epidermis tissue male adult 58 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR969HBF Peak\ track wgEncodeReg4Epigenetics_ENCFF784MJJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF868JPL ENCSR969HBF Signal bigWig Skin epidermis tissue male adult 58 years H3K27ac signal 2 6221 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/7c00db01-fb1b-41c5-9a1e-25c004cd58f0/ENCFF868JPL.bigWig\ color 181,145,0\ longLabel Skin epidermis tissue male adult 58 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR969HBF Signal\ track wgEncodeReg4Epigenetics_ENCFF868JPL\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF772QSE ENCSR969QKG Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years DNase peak 4 6222 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/fb599866-8898-426e-b201-cf87ec11d53a/ENCFF772QSE.bigBed\ color 6,218,147\ labelFields none\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR969QKG Peak\ track wgEncodeReg4Epigenetics_ENCFF772QSE\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF018LAK ENCSR969QKG Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years DNase signal 2 6223 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/11/30/ec2578b4-7ba7-4863-a8eb-6613ec79c807/ENCFF018LAK.bigWig\ color 6,218,147\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 48 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR969QKG Signal\ track wgEncodeReg4Epigenetics_ENCFF018LAK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF774SBJ ENCSR970DQR Peak bigBed 5 Chondrocyte DNase peak 4 6224 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/fb0f0ffb-6665-4a6c-a401-709f561cd925/ENCFF774SBJ.bigBed\ color 6,218,147\ labelFields none\ longLabel Chondrocyte DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR970DQR Peak\ track wgEncodeReg4Epigenetics_ENCFF774SBJ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF807AUZ ENCSR970DQR Signal bigWig Chondrocyte DNase signal 2 6225 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/10/18/14687600-6d05-4d43-a138-9814464bb2d7/ENCFF807AUZ.bigWig\ color 6,218,147\ longLabel Chondrocyte DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR970DQR Signal\ track wgEncodeReg4Epigenetics_ENCFF807AUZ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF547UCM ENCSR970UNF Peak bigBed 5 Colonic mucosa tissue female adult 41 years ATAC peak 4 6226 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/ecb0ede3-8506-458d-87f9-19aa938d00cc/ENCFF547UCM.bigBed\ color 2,199,185\ longLabel Colonic mucosa tissue female adult 41 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR970UNF Peak\ track wgEncodeReg4Epigenetics_ENCFF547UCM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF641HAD ENCSR970UNF Signal bigWig Colonic mucosa tissue female adult 41 years ATAC signal 2 6227 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/71bff5e0-e87a-4eb0-8a85-82bb474e96f7/ENCFF641HAD.bigWig\ color 2,199,185\ longLabel Colonic mucosa tissue female adult 41 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR970UNF Signal\ track wgEncodeReg4Epigenetics_ENCFF641HAD\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF059VKX ENCSR970ZLG Peak bigBed 5 Small intestine tissue male embryo 87 days DNase peak 4 6228 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/7420aab5-7918-48a9-ae5e-a63385b73c78/ENCFF059VKX.bigBed\ color 6,218,147\ labelFields none\ longLabel Small intestine tissue male embryo 87 days DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR976GAB Peak\ track wgEncodeReg4Epigenetics_ENCFF673AYP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF264HCG ENCSR976GAB Signal bigWig Calu3 H3K27ac signal 2 6249 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/c2a0c261-5b83-4033-9a7b-df4fd8326c7d/ENCFF264HCG.bigWig\ color 181,145,0\ longLabel Calu3 H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR976GAB Signal\ track wgEncodeReg4Epigenetics_ENCFF264HCG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF833JFG ENCSR976RWL Peak bigBed 5 Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak 4 6250 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/1aa78d69-6a51-423e-a20f-78715d6573de/ENCFF833JFG.bigBed\ color 181,145,0\ longLabel Stimulated activated CD8-positive, alpha-beta memory T cell male adult 30 years treated with 10 ng/mL Interleukin-2 , anti-CD3 and anti-CD28 coated beads H3K27ac peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR976XOY Peak\ track wgEncodeReg4Epigenetics_ENCFF018YEW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF846JPR ENCSR976XOY Signal bigWig Left forelimb tissue male embryo 81 days DNase signal 2 6253 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/a2a0c9b0-cead-45d8-afd8-2605923d82ff/ENCFF846JPR.bigWig\ color 6,218,147\ longLabel Left forelimb tissue male embryo 81 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR976XOY Signal\ track wgEncodeReg4Epigenetics_ENCFF846JPR\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF631BVU ENCSR977FMZ Peak bigBed 5 Immature natural killer cell H3K27ac peak 4 6254 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/c5233007-ee52-48ac-b2f6-ecfed0f04681/ENCFF631BVU.bigBed\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR977FMZ Peak\ track wgEncodeReg4Epigenetics_ENCFF631BVU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF377NQI ENCSR977FMZ Signal bigWig Immature natural killer cell H3K27ac signal 2 6255 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/06/a79d8da5-22f1-4ed2-b37a-ea2afd28a251/ENCFF377NQI.bigWig\ color 181,145,0\ longLabel Immature natural killer cell H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR977FMZ Signal\ track wgEncodeReg4Epigenetics_ENCFF377NQI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF059THC ENCSR977LVI Peak bigBed 5 T-cell female adult 21 years ATAC peak 4 6256 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/41a12ab6-40b2-4488-bcb9-53f49353f605/ENCFF059THC.bigBed\ color 2,199,185\ longLabel T-cell female adult 21 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR977LVI Peak\ track wgEncodeReg4Epigenetics_ENCFF059THC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF814ZWG ENCSR977LVI Signal bigWig T-cell female adult 21 years ATAC signal 2 6257 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/31/b1b90e30-a636-4102-8f15-3f65dc031966/ENCFF814ZWG.bigWig\ color 2,199,185\ longLabel T-cell female adult 21 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR977LVI Signal\ track wgEncodeReg4Epigenetics_ENCFF814ZWG\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF296YGV ENCSR977UMU Peak bigBed 5 Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase peak 4 6258 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/a85e6f46-9d93-4eca-9302-8661fa2efb74/ENCFF296YGV.bigBed\ color 6,218,147\ labelFields none\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR977UMU Peak\ track wgEncodeReg4Epigenetics_ENCFF296YGV\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF014IBC ENCSR977UMU Signal bigWig Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase signal 2 6259 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/02/14/ec91249f-a3c4-4d1c-bf46-7eabeda33f1c/ENCFF014IBC.bigWig\ color 6,218,147\ longLabel Multiple sclerosis CD4-positive, alpha-beta memory T cell DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR977UMU Signal\ track wgEncodeReg4Epigenetics_ENCFF014IBC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF413BXB ENCSR978HFU Peak bigBed 5 K562 treated with 100 nM GSK J4 for 4 hours ATAC peak 4 6260 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/fa2104a4-2deb-4ee8-a75c-9962d0c03395/ENCFF413BXB.bigBed\ color 2,199,185\ longLabel K562 treated with 100 nM GSK J4 for 4 hours ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR978HFU Peak\ track wgEncodeReg4Epigenetics_ENCFF413BXB\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF786OFP ENCSR978HFU Signal bigWig K562 treated with 100 nM GSK J4 for 4 hours ATAC signal 2 6261 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/3f01171a-71a7-47d3-96e7-a3ac5f4838ae/ENCFF786OFP.bigWig\ color 2,199,185\ longLabel K562 treated with 100 nM GSK J4 for 4 hours ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR978HFU Signal\ track wgEncodeReg4Epigenetics_ENCFF786OFP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF817DUW ENCSR978LBY Peak bigBed 5 Brain organoid male adult 53 years, 90 days post differentiation H3K27ac peak 4 6262 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/bdc2a4aa-6c01-4612-9c96-440fe0aef67c/ENCFF817DUW.bigBed\ color 181,145,0\ longLabel Brain organoid male adult 53 years, 90 days post differentiation H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR978LBY Peak\ track wgEncodeReg4Epigenetics_ENCFF817DUW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF473LYE ENCSR978LBY Signal bigWig Brain organoid male adult 53 years, 90 days post differentiation H3K27ac signal 2 6263 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/05/11/ebe5f8c9-5fcb-4a10-a35c-72b12633198a/ENCFF473LYE.bigWig\ color 181,145,0\ longLabel Brain organoid male adult 53 years, 90 days post differentiation H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR978LBY Signal\ track wgEncodeReg4Epigenetics_ENCFF473LYE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF686XMQ ENCSR978QUT Peak bigBed 5 Testis tissue male adult 54 years DNase peak 4 6264 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/d71148f2-d996-4d46-8555-eae297d399f2/ENCFF686XMQ.bigBed\ color 6,218,147\ labelFields none\ longLabel Testis tissue male adult 54 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR981USF Peak\ track wgEncodeReg4Epigenetics_ENCFF664PMT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF551GZK ENCSR981USF Signal bigWig Spleen tissue female adult 61 years H3K4me3 signal 2 6279 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/23/670a5aa8-8daf-4e4c-9c64-782570b770bd/ENCFF551GZK.bigWig\ color 255,0,0\ longLabel Spleen tissue female adult 61 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR981USF Signal\ track wgEncodeReg4Epigenetics_ENCFF551GZK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF574BQO ENCSR982QIF Peak bigBed 5 Ascending aorta tissue female adult 51 years H3K27ac peak 4 6280 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/64dc52ac-2aab-4780-b925-06d222cbe3bc/ENCFF574BQO.bigBed\ color 181,145,0\ longLabel Ascending aorta tissue female adult 51 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR982QIF Peak\ track wgEncodeReg4Epigenetics_ENCFF574BQO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF557HHH ENCSR982QIF Signal bigWig Ascending aorta tissue female adult 51 years H3K27ac signal 2 6281 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/17/74578fdd-ddb6-48c6-910c-11cb6f2e4630/ENCFF557HHH.bigWig\ color 181,145,0\ longLabel Ascending aorta tissue female adult 51 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR982QIF Signal\ track wgEncodeReg4Epigenetics_ENCFF557HHH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF536ZGD ENCSR982XOK Peak bigBed 5 Middle frontal area 46 tissue male adult 71 years DNase peak 4 6282 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/96dabe1b-b157-4625-bce8-881cc534356a/ENCFF536ZGD.bigBed\ color 6,218,147\ labelFields none\ longLabel Middle frontal area 46 tissue male adult 71 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR982XOK Peak\ track wgEncodeReg4Epigenetics_ENCFF536ZGD\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF980SJY ENCSR982XOK Signal bigWig Middle frontal area 46 tissue male adult 71 years DNase signal 2 6283 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/2d1d1876-7ea5-45c9-b462-2cc9da61ddbd/ENCFF980SJY.bigWig\ color 6,218,147\ longLabel Middle frontal area 46 tissue male adult 71 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR982XOK Signal\ track wgEncodeReg4Epigenetics_ENCFF980SJY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF744UJW ENCSR983HXF Peak bigBed 5 Stimulated activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC peak 4 6284 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/03/95ed91b7-4944-450c-bfbe-ad5224bcda3d/ENCFF744UJW.bigBed\ color 2,199,185\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR983HXF Peak\ track wgEncodeReg4Epigenetics_ENCFF744UJW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF133HQE ENCSR983HXF Signal bigWig Stimulated activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC signal 2 6285 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/03/fcc6d188-0d7c-4a88-b8df-7913a8467622/ENCFF133HQE.bigWig\ color 2,199,185\ longLabel Stimulated activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult 30 years treated with anti-CD3 and anti-CD28 coated beads, 10 ng/mL Interleukin-2 ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR983HXF Signal\ track wgEncodeReg4Epigenetics_ENCFF133HQE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF456RUT ENCSR984HJW Peak bigBed 5 Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak 4 6286 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/eebeea80-c693-4a08-ad2f-18dfe1da2f18/ENCFF456RUT.bigBed\ color 6,218,147\ labelFields none\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984HJW Peak\ track wgEncodeReg4Epigenetics_ENCFF456RUT\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF346AYM ENCSR984HJW Signal bigWig Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal 2 6287 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/14344166-dd26-44ca-8eaa-3cbd984392fd/ENCFF346AYM.bigWig\ color 6,218,147\ longLabel Cognitive impairment, Alzheimer's disease head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984HJW Signal\ track wgEncodeReg4Epigenetics_ENCFF346AYM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF044OOC ENCSR984KWT Peak bigBed 5 Thoracic aorta tissue male adult 37 years H3K4me3 peak 4 6288 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/d61e6a7e-c4dd-4319-9119-e076bf005a52/ENCFF044OOC.bigBed\ color 255,0,0\ longLabel Thoracic aorta tissue male adult 37 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984KWT Peak\ track wgEncodeReg4Epigenetics_ENCFF044OOC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF696UEY ENCSR984KWT Signal bigWig Thoracic aorta tissue male adult 37 years H3K4me3 signal 2 6289 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/09/d49649fe-71bf-4f70-97a9-82e76ee8550d/ENCFF696UEY.bigWig\ color 255,0,0\ longLabel Thoracic aorta tissue male adult 37 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984KWT Signal\ track wgEncodeReg4Epigenetics_ENCFF696UEY\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF416HYY ENCSR984SDD Peak bigBed 5 Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak 4 6290 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/781d92d0-8cc0-42b4-a240-735b4e04fecf/ENCFF416HYY.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984SDD Peak\ track wgEncodeReg4Epigenetics_ENCFF416HYY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF349JFX ENCSR984SDD Signal bigWig Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal 2 6291 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/01/08/52da53b4-4a92-46a6-888e-be82b3a23615/ENCFF349JFX.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment head of caudate nucleus tissue female adult 90 or above years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984SDD Signal\ track wgEncodeReg4Epigenetics_ENCFF349JFX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF014ZQC ENCSR984SQJ Peak bigBed 5 Right atrium auricular region tissue female adult 53 years DNase peak 4 6292 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/32817495-2efa-4edf-9277-1ee5abffa5b9/ENCFF014ZQC.bigBed\ color 6,218,147\ labelFields none\ longLabel Right atrium auricular region tissue female adult 53 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984SQJ Peak\ track wgEncodeReg4Epigenetics_ENCFF014ZQC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF832GZH ENCSR984SQJ Signal bigWig Right atrium auricular region tissue female adult 53 years DNase signal 2 6293 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/06/78b79730-5c90-4f8f-bce2-790b5f884aa3/ENCFF832GZH.bigWig\ color 6,218,147\ longLabel Right atrium auricular region tissue female adult 53 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR984SQJ Signal\ track wgEncodeReg4Epigenetics_ENCFF832GZH\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF430LZO ENCSR986FPJ Peak bigBed 5 SJCRH30 H3K4me3 peak 4 6294 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/39492e5c-4404-4930-878c-9d9484e60c58/ENCFF430LZO.bigBed\ color 255,0,0\ longLabel SJCRH30 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR986FPJ Peak\ track wgEncodeReg4Epigenetics_ENCFF430LZO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF810CJQ ENCSR986FPJ Signal bigWig SJCRH30 H3K4me3 signal 2 6295 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/08/24/bda92321-7e14-42e9-81b9-a96f817d8c83/ENCFF810CJQ.bigWig\ color 255,0,0\ longLabel SJCRH30 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR986FPJ Signal\ track wgEncodeReg4Epigenetics_ENCFF810CJQ\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF114OPZ ENCSR986HEN Peak bigBed 5 Right renal pelvis tissue male embryo 105 days DNase peak 4 6296 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/173bcf33-a698-49de-b04e-ecf92ab5f64a/ENCFF114OPZ.bigBed\ color 6,218,147\ labelFields none\ longLabel Right renal pelvis tissue male embryo 105 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR986HEN Peak\ track wgEncodeReg4Epigenetics_ENCFF114OPZ\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF316ZWI ENCSR986HEN Signal bigWig Right renal pelvis tissue male embryo 105 days DNase signal 2 6297 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/05/20f9703e-1cd5-4a4d-bf0f-e2f187d189a5/ENCFF316ZWI.bigWig\ color 6,218,147\ longLabel Right renal pelvis tissue male embryo 105 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR986HEN Signal\ track wgEncodeReg4Epigenetics_ENCFF316ZWI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF214DHP ENCSR986XLW Peak bigBed 5 Lung tissue embryo 101 days DNase peak 4 6298 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/9d2599ad-e1c7-42aa-9d20-c54a948cdae3/ENCFF214DHP.bigBed\ color 6,218,147\ labelFields none\ longLabel Lung tissue embryo 101 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR986XLW Peak\ track wgEncodeReg4Epigenetics_ENCFF214DHP\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF171RLN ENCSR986XLW Signal bigWig Lung tissue embryo 101 days DNase signal 2 6299 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/19/eb787cdf-e4b3-47d0-be64-1bf7fd73b359/ENCFF171RLN.bigWig\ color 6,218,147\ longLabel Lung tissue embryo 101 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR986XLW Signal\ track wgEncodeReg4Epigenetics_ENCFF171RLN\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF428NZR ENCSR986YWZ Peak bigBed 5 Inferior parietal cortex tissue male adult 84 years DNase peak 4 6300 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/81e0d589-16e7-4c38-9f33-14820e25900e/ENCFF428NZR.bigBed\ color 6,218,147\ labelFields none\ longLabel Inferior parietal cortex tissue male adult 84 years DNase peak\ mouseOver Signal: $SignalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR988YKR Peak\ track wgEncodeReg4Epigenetics_ENCFF965WUY\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF504BVV ENCSR988YKR Signal bigWig Kidney capillary endothelial cell female embryo 113 days DNase signal 2 6315 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/72ac6965-bc40-4c18-972a-5e12963b1235/ENCFF504BVV.bigWig\ color 6,218,147\ longLabel Kidney capillary endothelial cell female embryo 113 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR988YKR Signal\ track wgEncodeReg4Epigenetics_ENCFF504BVV\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF231CBA ENCSR989PTS Peak bigBed 5 Heart left ventricle tissue male adult 40 years H3K27ac peak 4 6316 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/fc58afe4-8b1b-44d9-bc03-6fcf99b0d8f9/ENCFF231CBA.bigBed\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 40 years H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR989PTS Peak\ track wgEncodeReg4Epigenetics_ENCFF231CBA\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF030MCS ENCSR989PTS Signal bigWig Heart left ventricle tissue male adult 40 years H3K27ac signal 2 6317 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/07/23/3551825d-99b4-4997-8858-4b8662a26476/ENCFF030MCS.bigWig\ color 181,145,0\ longLabel Heart left ventricle tissue male adult 40 years H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR989PTS Signal\ track wgEncodeReg4Epigenetics_ENCFF030MCS\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF241ROA ENCSR989RAL Peak bigBed 5 IPS-20b H3K4me3 peak 4 6318 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/8c166d20-0223-4767-ae54-865e845b319b/ENCFF241ROA.bigBed\ color 255,0,0\ longLabel IPS-20b H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR989RAL Peak\ track wgEncodeReg4Epigenetics_ENCFF241ROA\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF545ONK ENCSR989RAL Signal bigWig IPS-20b H3K4me3 signal 2 6319 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/20/83c60266-0cf0-4278-b9c7-0a72462e4e62/ENCFF545ONK.bigWig\ color 255,0,0\ longLabel IPS-20b H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR989RAL Signal\ track wgEncodeReg4Epigenetics_ENCFF545ONK\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF040TVW ENCSR989YIV Peak bigBed 5 Placenta tissue male embryo 91 days DNase peak 4 6320 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/43ec268e-cbe9-4928-b0f4-06c9234d4e17/ENCFF040TVW.bigBed\ color 6,218,147\ labelFields none\ longLabel Placenta tissue male embryo 91 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR989YIV Peak\ track wgEncodeReg4Epigenetics_ENCFF040TVW\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF197KYO ENCSR989YIV Signal bigWig Placenta tissue male embryo 91 days DNase signal 2 6321 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/07/3c38292c-46e1-45b0-98a1-f3954a79f9f1/ENCFF197KYO.bigWig\ color 6,218,147\ longLabel Placenta tissue male embryo 91 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR989YIV Signal\ track wgEncodeReg4Epigenetics_ENCFF197KYO\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF447ZCO ENCSR990NNX Peak bigBed 5 Upper lobe of right lung tissue male adult 60 years ATAC peak 4 6322 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/8dadcb43-512e-4b30-8150-5b2e53d1dc31/ENCFF447ZCO.bigBed\ color 2,199,185\ longLabel Upper lobe of right lung tissue male adult 60 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR990NNX Peak\ track wgEncodeReg4Epigenetics_ENCFF447ZCO\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF138FYP ENCSR990NNX Signal bigWig Upper lobe of right lung tissue male adult 60 years ATAC signal 2 6323 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/03/16/448608ad-d8bc-4236-86b8-80c8b92be456/ENCFF138FYP.bigWig\ color 2,199,185\ longLabel Upper lobe of right lung tissue male adult 60 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR990NNX Signal\ track wgEncodeReg4Epigenetics_ENCFF138FYP\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF422OHK ENCSR990XXC Peak bigBed 5 Right kidney tissue male embryo 115 days DNase peak 4 6324 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/0e399028-74c2-45dc-95fe-55475a9e1d23/ENCFF422OHK.bigBed\ color 6,218,147\ labelFields none\ longLabel Right kidney tissue male embryo 115 days DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR990XXC Peak\ track wgEncodeReg4Epigenetics_ENCFF422OHK\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF809XFE ENCSR990XXC Signal bigWig Right kidney tissue male embryo 115 days DNase signal 2 6325 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/11/06/af9b4a8d-979f-464d-9643-b60ef215f324/ENCFF809XFE.bigWig\ color 6,218,147\ longLabel Right kidney tissue male embryo 115 days DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR990XXC Signal\ track wgEncodeReg4Epigenetics_ENCFF809XFE\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF178AMH ENCSR991JSQ Peak bigBed 5 HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak 4 6326 181 145 0 218 200 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/b3d94c08-041b-40e1-a1fd-a5f4c43e30d5/ENCFF178AMH.bigBed\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR991JSQ Peak\ track wgEncodeReg4Epigenetics_ENCFF178AMH\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF100CVT ENCSR991JSQ Signal bigWig HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal 2 6327 181 145 0 218 200 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/13/dc9ead31-3712-4d33-b040-67dcee05a7c8/ENCFF100CVT.bigWig\ color 181,145,0\ longLabel HCT116 genetically modified insertion using CRISPR inserting O. sativa LOC4335696, insertion using CRISPR targeting H. sapiens SUPT16H treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours H3K27ac signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR991JSQ Signal\ track wgEncodeReg4Epigenetics_ENCFF100CVT\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF460VCX ENCSR991PBP Peak bigBed 5 Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads ATAC peak 4 6328 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/e298b150-c20f-4bc4-94ea-74a3c831b2b9/ENCFF460VCX.bigBed\ color 2,199,185\ longLabel Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR991PBP Peak\ track wgEncodeReg4Epigenetics_ENCFF460VCX\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF858UDC ENCSR991PBP Signal bigWig Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads ATAC signal 2 6329 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/21/f828004c-0ee2-4521-89cc-5edce80a7496/ENCFF858UDC.bigWig\ color 2,199,185\ longLabel Activated CD4-positive, alpha-beta T cell male adult 20 years treated with anti-CD3 and anti-CD28 coated beads ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR991PBP Signal\ track wgEncodeReg4Epigenetics_ENCFF858UDC\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF620SKK ENCSR994KTY Peak bigBed 5 Colonic mucosa tissue female adult 41 years DNase peak 4 6330 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/6ac18446-6fff-4aef-be95-691951e2756c/ENCFF620SKK.bigBed\ color 6,218,147\ labelFields none\ longLabel Colonic mucosa tissue female adult 41 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR994KTY Peak\ track wgEncodeReg4Epigenetics_ENCFF620SKK\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF841ILF ENCSR994KTY Signal bigWig Colonic mucosa tissue female adult 41 years DNase signal 2 6331 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/08/30/0a81eb4f-dd73-476d-bc49-708474f50295/ENCFF841ILF.bigWig\ color 6,218,147\ longLabel Colonic mucosa tissue female adult 41 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR994KTY Signal\ track wgEncodeReg4Epigenetics_ENCFF841ILF\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF408PGC ENCSR994PGV Peak bigBed 5 Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K4me3 peak 4 6332 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/b0cf483e-f06d-4da2-8115-68fafc250d8a/ENCFF408PGC.bigBed\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR994PGV Peak\ track wgEncodeReg4Epigenetics_ENCFF408PGC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF543UQM ENCSR994PGV Signal bigWig Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K4me3 signal 2 6333 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/06/18/633a35ba-03f3-471a-a53a-63cc0963fe5e/ENCFF543UQM.bigWig\ color 255,0,0\ longLabel Naive thymus-derived CD4-positive, alpha-beta T cell male adult 42 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR994PGV Signal\ track wgEncodeReg4Epigenetics_ENCFF543UQM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF250IDG ENCSR995MHN Peak bigBed 5 Caco-2 H3K4me3 peak 4 6334 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/5188a5aa-94f8-485d-8557-6e25be4e59cf/ENCFF250IDG.bigBed\ color 255,0,0\ longLabel Caco-2 H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR995MHN Peak\ track wgEncodeReg4Epigenetics_ENCFF250IDG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF221TSA ENCSR995MHN Signal bigWig Caco-2 H3K4me3 signal 2 6335 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2022/03/31/f1d10744-6cb9-4845-8fcf-810ece5c3427/ENCFF221TSA.bigWig\ color 255,0,0\ longLabel Caco-2 H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR995MHN Signal\ track wgEncodeReg4Epigenetics_ENCFF221TSA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF368XUM ENCSR995YPS Peak bigBed 5 Mild cognitive impairment middle frontal area 46 tissue female adult 87 years DNase peak 4 6336 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/aec3b8fa-8b6d-4cac-94d2-aba43e2ea3d9/ENCFF368XUM.bigBed\ color 6,218,147\ labelFields none\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 87 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR995YPS Peak\ track wgEncodeReg4Epigenetics_ENCFF368XUM\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF732ABI ENCSR995YPS Signal bigWig Mild cognitive impairment middle frontal area 46 tissue female adult 87 years DNase signal 2 6337 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/25/53379647-c890-420d-89f2-e17b53f5df34/ENCFF732ABI.bigWig\ color 6,218,147\ longLabel Mild cognitive impairment middle frontal area 46 tissue female adult 87 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR995YPS Signal\ track wgEncodeReg4Epigenetics_ENCFF732ABI\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF365PDX ENCSR996ZCR Peak bigBed 5 Ovary tissue female adult 46 years ATAC peak 4 6338 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/24/2bacaec3-c56a-4523-b0a7-de1d1e032743/ENCFF365PDX.bigBed\ color 2,199,185\ longLabel Ovary tissue female adult 46 years ATAC peak\ mouseOver Signal: $signalValue
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qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR998IXQ Peak\ track wgEncodeReg4Epigenetics_ENCFF169MCG\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF586UHW ENCSR998IXQ Signal bigWig Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour DNase signal 2 6343 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/22/56ebd38a-7831-4129-81f9-7c6ed8764e93/ENCFF586UHW.bigWig\ color 6,218,147\ longLabel Stimulated activated CD4-positive, alpha-beta T cell male adult 38 years treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR998IXQ Signal\ track wgEncodeReg4Epigenetics_ENCFF586UHW\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF468QWC ENCSR998NQG Peak bigBed 5 Gastrocnemius medialis tissue male adult 54 years CTCF peak 4 6344 0 176 240 127 215 247 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/cd7bf851-cb80-431f-afd0-130bf6937fed/ENCFF468QWC.bigBed\ color 0,176,240\ labelFields none\ longLabel Gastrocnemius medialis tissue male adult 54 years CTCF peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR998NQG Peak\ track wgEncodeReg4Epigenetics_ENCFF468QWC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF782JRA ENCSR998NQG Signal bigWig Gastrocnemius medialis tissue male adult 54 years CTCF signal 2 6345 0 176 240 127 215 247 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/01/36316553-628b-4345-aebc-3b687b673cf6/ENCFF782JRA.bigWig\ color 0,176,240\ longLabel Gastrocnemius medialis tissue male adult 54 years CTCF signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR998NQG Signal\ track wgEncodeReg4Epigenetics_ENCFF782JRA\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF028YXS ENCSR998QKF Peak bigBed 5 Peyer's patch tissue male adult 54 years H3K4me3 peak 4 6346 255 0 0 255 127 127 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/ad07e1f4-4fda-400c-90f9-aec0c5632850/ENCFF028YXS.bigBed\ color 255,0,0\ longLabel Peyer's patch tissue male adult 54 years H3K4me3 peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR998QKF Peak\ track wgEncodeReg4Epigenetics_ENCFF028YXS\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF305GQX ENCSR998QKF Signal bigWig Peyer's patch tissue male adult 54 years H3K4me3 signal 2 6347 255 0 0 255 127 127 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/21/f623cfa9-f979-45a6-ad6d-105025c0db1b/ENCFF305GQX.bigWig\ color 255,0,0\ longLabel Peyer's patch tissue male adult 54 years H3K4me3 signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR998QKF Signal\ track wgEncodeReg4Epigenetics_ENCFF305GQX\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF194LAU ENCSR999NKW Peak bigBed 5 Prostate gland tissue male adult 54 years ATAC peak 4 6348 2 199 185 128 227 220 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/374cc9ac-76a3-42b5-99c9-64088f02e319/ENCFF194LAU.bigBed\ color 2,199,185\ longLabel Prostate gland tissue male adult 54 years ATAC peak\ mouseOver Signal: $signalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR999NKW Peak\ track wgEncodeReg4Epigenetics_ENCFF194LAU\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF346EDM ENCSR999NKW Signal bigWig Prostate gland tissue male adult 54 years ATAC signal 2 6349 2 199 185 128 227 220 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2021/02/25/133ddb4d-017c-44c8-a9e2-3dc82b3bc91b/ENCFF346EDM.bigWig\ color 2,199,185\ longLabel Prostate gland tissue male adult 54 years ATAC signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR999NKW Signal\ track wgEncodeReg4Epigenetics_ENCFF346EDM\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF255FLC ENCSR999TSD Peak bigBed 5 Coronary artery tissue female adult 51 years DNase peak 4 6350 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/a66043a3-cf6d-450d-b3c9-8d2316fe2d9c/ENCFF255FLC.bigBed\ color 6,218,147\ labelFields none\ longLabel Coronary artery tissue female adult 51 years DNase peak\ mouseOver Signal: $SignalValue
qValue (-log10): $qValue\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR999TSD Peak\ track wgEncodeReg4Epigenetics_ENCFF255FLC\ type bigBed 5\ visibility squish\ wgEncodeReg4Epigenetics_ENCFF875SCU ENCSR999TSD Signal bigWig Coronary artery tissue female adult 51 years DNase signal 2 6351 6 218 147 130 236 201 0 0 0 regulation 0 autoScale on\ bigDataUrl https://encode-public.s3.amazonaws.com/2020/10/24/534e6190-596c-455e-8e4d-5babeedb931f/ENCFF875SCU.bigWig\ color 6,218,147\ longLabel Coronary artery tissue female adult 51 years DNase signal\ maxHeightPixels 100:32:8\ parent wgEncodeReg4Epigenetics off\ shortLabel ENCSR999TSD Signal\ track wgEncodeReg4Epigenetics_ENCFF875SCU\ type bigWig\ visibility full\ wgEncodeReg4Epigenetics_ENCFF295PBU ENCSR999VDH Peak bigBed 5 Pancreas tissue female adult 59 years DNase peak 4 6352 6 218 147 130 236 201 0 0 0 regulation 1 bigDataUrl https://encode-public.s3.amazonaws.com/2020/09/27/0affa186-d115-424f-8bb9-f911d68dcd66/ENCFF295PBU.bigBed\ color 6,218,147\ labelFields none\ longLabel Pancreas tissue female adult 59 years DNase peak\ mouseOver Signal: $SignalValue
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